BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035659
         (655 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/698 (58%), Positives = 477/698 (68%), Gaps = 111/698 (15%)

Query: 16  VISLPRH-----PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           ++SLPR      PNP ++T+NN      HP  SLI QC   KQLKQIH QMLRTGLFFDP
Sbjct: 8   LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
           +SAS+L T  AL  F SL+YA+++FDQIP PNLYTWNTLIRAY+SS+ P QS +IFL+++
Sbjct: 68  FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
           + SP FP++FTFPF+IKAA+ L +   G+A HGMVIK     D+FI NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            + Y VFV I ++DVVSWNSMI+ FVQGG  E+A+EL++EME +N       M+ + + C
Sbjct: 188 GLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKC 247

Query: 251 AKKRDL-----------------------------------------EFGRW-------- 261
               D                                          +   W        
Sbjct: 248 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYE 307

Query: 262 ----PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
               P EAL +FHELQLSK   PDE T                         KQG+KLNC
Sbjct: 308 QCGKPKEALELFHELQLSKTAKPDEVTL------------------------KQGMKLNC 343

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +LTTSLIDMY KCG+L KAL VFH+V+ +DVFVWS MIAG AM+G G++A+ LFS+MQE 
Sbjct: 344 HLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED 403

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           KVKPNAVTFTN+LCACSH GLV+EGR FFNQME VYG                       
Sbjct: 404 KVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG----------------------- 440

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
                 KMP+ P ASVWGALLGAC IHENV LAE ACS L+ELEP NHGA VLLSNIYAK
Sbjct: 441 ------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAK 494

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
            GKWD VS LRK MR  GLKKEPGCSSIEV+G +H+FL G++SHP  K+IY+KLDEIVAR
Sbjct: 495 AGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVAR 554

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           L++ GYVPN+SHLLQLVEEEDV+EQAL LHSE+LAIA+GLIS   SQPIRIVKNLRVCGD
Sbjct: 555 LETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGD 614

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH+VAKL+SKLY+REILLRDRYRFHHFR G+CSCMDYW
Sbjct: 615 CHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/640 (60%), Positives = 470/640 (73%), Gaps = 59/640 (9%)

Query: 16  VISLPRH-----PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           ++SLPR      PNP ++T+NN      HP  SLI QC   KQLKQIH QMLRTGLFFDP
Sbjct: 8   LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
           +SAS+L T  AL  F SL+YA+++FDQIP PNLYTWNTLIRAY+SS+ P QS +IFL+++
Sbjct: 68  FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
           + SP FP++FTFPF+IKAA+ L +   G+A HGMVIK     D+FI NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            + Y VFV   ++DVVSWNSMI+ FVQGG                              C
Sbjct: 188 GLGYRVFVNXPRRDVVSWNSMITAFVQGG------------------------------C 217

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                      P EAL +F E++ ++NV P+  T V VLSACA+    + G  +H+ +++
Sbjct: 218 -----------PEEALELFQEME-TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA----------- 359
             I  +  L+ +++DMYTKCG+++ A  +F  +  +D+  W+TM+ G+A           
Sbjct: 266 NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGL 325

Query: 360 -MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
            M+G G++A+ LFS+MQE KVKPNAVTFTN+LCACSH GLV+EGR FFNQME VYGV+PG
Sbjct: 326 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 385

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           VKHY CMVD+LGRAGLL+EAVE IEKMP+ P ASVWGALLGAC IHENV LAE ACS L+
Sbjct: 386 VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLI 445

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           ELEP NHGA VLLSNIYAK GKWD VS LRK MR  GLKKEPGCSSIEV+G +H+FL G+
Sbjct: 446 ELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 505

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
           +SHP  K+IY+KLDEIVARL++ GYVPN+SHLLQLVEEEDV+EQAL LHSE+LAIA+GLI
Sbjct: 506 NSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLI 565

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
           S   SQPIRIVKNLRVCGDCH+VAKL+SKLY+REILLRDR
Sbjct: 566 STGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 605


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/595 (59%), Positives = 443/595 (74%), Gaps = 15/595 (2%)

Query: 65  GLFFDPYSASKLFTPCALGTFSS----LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           G+       S LF   +L  F S    L+ A  +F +I + ++ +WN++I  +     P 
Sbjct: 155 GMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE 214

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++  +F ++   +   PN  T   V+ A A+ +    G+     + ++  + +L +SN++
Sbjct: 215 EALQLFKRMKMENAR-PNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  Y  CG L  A  +F  + +KD+VSW +MI G+ + G ++ A  ++  M  E++    
Sbjct: 274 LDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI---- 329

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
               A++S+  +      G+ P EAL+IF ELQL+KN  P+E T  S L+ACAQLGAMD+
Sbjct: 330 TAWNALISSYQQN-----GK-PKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G  IH  +KKQGIKLN ++TTSLIDMY+KCG+L+KALEVF++V+ RDVFVWS MIAG AM
Sbjct: 384 GGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
           +G GR A+DLFS+MQE KVKPNAVTFTN+LCACSHSGLVDEGR+FFNQM PVYGVVPG K
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVD+LGRAG L+EAVE IEKMPIVP ASVWGALLGAC+I+ NVELAE ACS LLE 
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           +  NHGA VLLSNIYAK GKWD VS LR+HM+VSGL+KEPGCSSIEVNG IH+FL G++S
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNS 623

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HPL  EIYSKLDEIVAR+KS GYV + SHLLQ VEEE ++E ALNLHSE+LAIAYGLI +
Sbjct: 624 HPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRM 683

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           EPSQPIRIVKNLRVCGDCH+VAKLISKLYNR+ILLRDRYRFHHF GGNCSCMDYW
Sbjct: 684 EPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/464 (45%), Positives = 291/464 (62%), Gaps = 28/464 (6%)

Query: 9   METLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           M TL  P+ S+P   NPT LT NN  + +P  V  LI +C N K LKQ+H  MLRTGLFF
Sbjct: 1   MATLGNPLASVPISSNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFF 60

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           DP SA+KLFT CAL + SSL+YA ++FDQIP+PNLYTWNTLIRA++SS +PIQ  ++F+Q
Sbjct: 61  DPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQ 120

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           +++ S  FPN +TFPFVIKAA  +     GQAIHGMV+K+SF  DLFISNSLIHFY+  G
Sbjct: 121 MLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLG 180

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           DL  AY VF  I +KD+VSWNSMISGFVQGG  E+A++L++ M+MEN +P+ VTMV VLS
Sbjct: 181 DLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLS 240

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK+ DLEFGRW  + +           ++ +     ++L    + G+++   ++  KM
Sbjct: 241 ACAKRIDLEFGRWACDYIE-------RNGIDINLILSNAMLDMYVKCGSLEDARRLFDKM 293

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
           +++ I       T++ID Y K G+ D A  VF  +   D+  W+ +I+ +   G  +EAL
Sbjct: 294 EEKDI----VSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEAL 349

Query: 369 DLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----YT 423
            +F  +Q  K  KPN VT  + L AC+  G +D G         VY    G+K      T
Sbjct: 350 AIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIH-----VYIKKQGIKLNFHITT 404

Query: 424 CMVDMLGRAGLLDEAVEF---IEKMPIVPGASVWGALLGACKIH 464
            ++DM  + G L++A+E    +E+  +     VW A++    +H
Sbjct: 405 SLIDMYSKCGHLEKALEVFYSVERRDVF----VWSAMIAGLAMH 444


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/618 (57%), Positives = 446/618 (72%), Gaps = 22/618 (3%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           LIK    +++L   K  H  +++  L  D +  + L   +  C       L     +F  
Sbjct: 142 LIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCG-----ELGLGYRVFVN 196

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           IP+ ++ +WN++I A+     P ++  +F Q +      PN  T   V+ A A+   F  
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELF-QEMETQNVKPNGITMVGVLSACAKKSDFEF 255

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H  + ++   + L +SN+++  Y  CG +  A  +F  + +KD+VSW +M+ G+ +
Sbjct: 256 GRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAK 315

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G ++ A  ++  M  +++      +++    C K         P EAL +FHELQLSK 
Sbjct: 316 IGEYDAAQGIFDAMPNQDIAAWN-ALISAYEQCGK---------PKEALELFHELQLSKT 365

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             PDE T VS LSACAQLGAMD+G  IH  +KKQG+KLNC+LTTSLIDMY KCG+L KAL
Sbjct: 366 AKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VFH+V+ +DVFVWS MIAG AM+G G++A+ LFS+MQE KVKPNAVTFTN+LCACSH G
Sbjct: 426 MVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 485

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EGR FFNQME VYGV+PGVKHY CMVD+LGRAGLL+EAVE IEKMP+ P ASVWGAL
Sbjct: 486 LVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGAL 545

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC IHENV LAE ACS L+ELEP NHGA VLLSNIYAK GKWD VS LRK MR  GLK
Sbjct: 546 LGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLK 605

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPGCSSIEV+G +H+FL G++SHP  K+IY+KLDEIVARL++ GYVPN+SHLLQLVEEE
Sbjct: 606 KEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEE 665

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           DV+EQAL LHSE+LAIA+GLIS   SQPIRIVKNLRVCGDCH+VAKL+SKLY+REILLRD
Sbjct: 666 DVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 725

Query: 638 RYRFHHFRGGNCSCMDYW 655
           RYRFHHFR G+CSCMDYW
Sbjct: 726 RYRFHHFREGHCSCMDYW 743



 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/461 (45%), Positives = 289/461 (62%), Gaps = 31/461 (6%)

Query: 16  VISLPRH-----PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           ++SLPR      PNP ++T+NN      HP  SLI QC   KQLKQIH QMLRTGLFFDP
Sbjct: 8   LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
           +SAS+L T  AL  F SL+YA+++FDQIP PNLYTWNTLIRAY+SS+ P QS +IFL+++
Sbjct: 68  FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
           + SP FP++FTFPF+IKAA+ L +   G+A HGMVIK     D+FI NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            + Y VFV I ++DVVSWNSMI+ FVQGG  E+A+EL++EME +NVKP+ +TMV VLSAC
Sbjct: 188 GLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247

Query: 251 AKKRDLEFGRWPN---EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
           AKK D EFGRW +   E   I   L LS N   D +T         + G+++   ++  K
Sbjct: 248 AKKSDFEFGRWVHSYIERNRIGESLTLS-NAMLDMYT---------KCGSVEDAKRLFDK 297

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           M ++ I      TT L+  Y K G  D A  +F  + ++D+  W+ +I+ +   G  +EA
Sbjct: 298 MPEKDI---VSWTTMLVG-YAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEA 353

Query: 368 LDLFSRMQEAKV-KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           L+LF  +Q +K  KP+ VT  + L AC+  G +D G      ++   G+       T ++
Sbjct: 354 LELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKK-QGMKLNCHLTTSLI 412

Query: 427 DMLGRAGLLDEAV---EFIEKMPIVPGASVWGALLGACKIH 464
           DM  + G L +A+     +E+  +     VW A++    +H
Sbjct: 413 DMYCKCGDLQKALMVFHSVERKDVF----VWSAMIAGLAMH 449


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/573 (54%), Positives = 417/573 (72%), Gaps = 11/573 (1%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G    L  A  +F  I   ++ +WN++I A++    P  +  +FL++   +   PN  T 
Sbjct: 172 GACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMEREN-VMPNSVTM 230

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
             V+ A A+ +    G+ +   + +   + DL + N+++  Y  CG +  A  +F  + +
Sbjct: 231 VGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           +DV SW  M+ G+ + G ++ A  ++  M ++ +    V + A           E    P
Sbjct: 291 RDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAY----------EQNGKP 340

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            EAL+IF+ELQLSK   PDE T VS LSACAQLGA+D+G  IH  +K++GI LNC+L +S
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+DMY KCG+L+KALEVF++V+ RDV+VWS MIAG  M+G G+ A+DLF  MQEAKVKPN
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
           +VTFTNVLCACSH+GLVDEGR+FF++MEPVYGVVP +KHY CMVD+LGRAG L+EA+E I
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
            +M   P ASVWGALLGAC +H NVEL E A   LL+LEP NHGA+VLLSNIYAKTG+W+
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWE 580

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            VSELRK MR + LKKEPGCSSIE NG +H+FL G+++HPL   IYSKL+EI  +LKS G
Sbjct: 581 KVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVG 640

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y PN+SHLLQL+EE+D++EQAL+LHSE+LAIA+GL+++ PSQPIR+VKNLR+CGDCH  A
Sbjct: 641 YEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFA 700

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KL+S++Y+R+ILLRDRYRFHHFR G+CSCMDYW
Sbjct: 701 KLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/460 (44%), Positives = 284/460 (61%), Gaps = 25/460 (5%)

Query: 9   METLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           ME LS P ISL         T+NN      H + S I +C + KQLK++H +MLRTGLFF
Sbjct: 1   MEALSVPSISLQNFS-----TLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFF 55

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           DP+SASKLFT  AL +FS+L+YAR +FDQIPQPNLYTWNTLIRAY+SS++P QSF+IFL 
Sbjct: 56  DPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLD 115

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           L+      PN+FTFPFVIKAA+ L   RVG A+HGM IK SF  DL+I NSL+ FY  CG
Sbjct: 116 LLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACG 175

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           DL+MA  +F  I  KDVVSWNSMIS F QG   E A+EL+ +ME ENV P+ VTMV VLS
Sbjct: 176 DLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLS 235

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAKK DLEFGRW    +         K +  D     ++L    + G++D   ++  +M
Sbjct: 236 ACAKKLDLEFGRWVCSYIE-------RKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM 288

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            ++ +    +  T ++D Y K G+ D A  VF+ +  +++  W+ +I+ +   G  +EAL
Sbjct: 289 PERDV----FSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEAL 344

Query: 369 DLFSRMQEAKV-KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
            +F+ +Q +K+ KP+ VT  + L AC+  G +D G      ++   G+V      + +VD
Sbjct: 345 AIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKR-EGIVLNCHLISSLVD 403

Query: 428 MLGRAGLLDEAVEF---IEKMPIVPGASVWGALLGACKIH 464
           M  + G L++A+E    +E+  +     VW A++    +H
Sbjct: 404 MYAKCGSLEKALEVFYSVEERDVY----VWSAMIAGLGMH 439


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/615 (50%), Positives = 431/615 (70%), Gaps = 16/615 (2%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           LIK    +  L   + +H   +++ +  D + A+ L   C   +   L+ A ++F  I +
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIH-CYF-SCGDLDSACKVFTTIKE 196

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WN++I  +     P ++  +F ++  +     +  T   V+ A A++     G+ 
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRDLEFGRR 255

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +   + ++    +L ++N+++  Y  CG +  A  +F  + +KD V+W +M+ G+     
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           +E A E+   M     K D V   A++SA       E    PNEAL +FHELQL KN+  
Sbjct: 316 YEAAREVLNAMP----KKDIVAWNALISA------YEQNGKPNEALLVFHELQLQKNIKL 365

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           ++ T VS LSACAQ+GA+++G  IH+ +KK GIK+N Y+T++LI MY+KCG+L+KA EVF
Sbjct: 366 NQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
           ++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 426 NSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 485

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           E    F +ME  YG+VP  KHY C+VD+LGR+G L++AV+FIE MPI P  SVWGALLGA
Sbjct: 486 EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK+GKWDNVSELRKHMRV+GLKKEP
Sbjct: 546 CKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEP 605

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P  SH+LQ++EEE+++
Sbjct: 606 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMK 665

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           EQ+LNLHSE+LAI YGLIS E  + IR++KNLR+CGDCH VAKLIS+LYNREI++RDRYR
Sbjct: 666 EQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYR 725

Query: 641 FHHFRGGNCSCMDYW 655
           FHHFR G CSC D+W
Sbjct: 726 FHHFRNGQCSCNDFW 740



 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 190/456 (41%), Positives = 278/456 (60%), Gaps = 27/456 (5%)

Query: 17  ISLPRHPN---PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSA 73
           +SLPRHPN   P   T NN    H     SLI +C +++QLKQ H  M+RTG+F DPYSA
Sbjct: 10  LSLPRHPNFSNPNQPTTNNERSRH---TISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSA 66

Query: 74  SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN- 132
           SKLF   AL +F+SLEYAR++FD+IPQPN +TWNTLIRAY+S  +P+ S   FL +V + 
Sbjct: 67  SKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSE 126

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
           S  +PN++TFPF+IKAAA +    +GQ++HGM IKS+   D+F++NSLIH Y  CGDL  
Sbjct: 127 SQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDS 186

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  VF  I +KDVVSWNSMI+GFVQ G  +KA+EL+++ME E+VK   VTMV VLSACAK
Sbjct: 187 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 246

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
            RDLEFGR      S   E +++ N+        ++L    + G+++   ++   M++  
Sbjct: 247 IRDLEFGR---RVCSYIEENRVNVNLTLAN----AMLDMYTKCGSIEDAKRLFDAMEE-- 297

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
            K N   TT ++D Y    + + A EV + +  +D+  W+ +I+ +   G   EAL +F 
Sbjct: 298 -KDNVTWTT-MLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFH 355

Query: 373 RMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            +Q +  +K N +T  + L AC+  G ++ GR   + ++   G+       + ++ M  +
Sbjct: 356 ELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKK-NGIKMNFYVTSALIHMYSK 414

Query: 432 AGLLDEAVEF---IEKMPIVPGASVWGALLGACKIH 464
            G L++A E    +EK  +     VW A++G   +H
Sbjct: 415 CGDLEKAREVFNSVEKRDVF----VWSAMIGGLAMH 446


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/613 (51%), Positives = 419/613 (68%), Gaps = 19/613 (3%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLY 104
           K   +LK +H   +  G+      +S LF   +L    G+  + + A  +F  +P  ++ 
Sbjct: 181 KAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVV 240

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WN +I A++    P ++ ++F ++       PN  T   V+ A A+ +    G+ I   
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVK-PNVITMVSVLSACAKKIDLEFGRWICSY 299

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           +  + F + L ++N+++  Y  CG +  A  +F  + +KD+VSW +M+ G  + G +++A
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEA 359

Query: 225 IELYREMEMENVKPDEVTMV--AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
             ++  M      P + T    A++SA       E    P  ALS+FHE+QLSK+  PDE
Sbjct: 360 HCIFDAM------PHKWTAAWNALISA------YEQNGKPRVALSLFHEMQLSKDAKPDE 407

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T +  L A AQLGA+D G  IH  +KK  I LNC+L TSL+DMY KCGNL+KA+EVFH 
Sbjct: 408 VTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA 467

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           V+ +DV+VWS MI   AMYG G+ ALDLFS M EA +KPNAVTFTN+LCAC+H+GLV+EG
Sbjct: 468 VERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEG 527

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              F QMEP+YG+VP ++HY C+VD+ GRAGLL++A  FIEKMPI P A+VWGALLGAC 
Sbjct: 528 EQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACS 587

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H NVELAE A  +LLELEP NHGA VLLSNIYAK G W+ VS LRK MR S +KKEP C
Sbjct: 588 RHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWC 647

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           SSI+VNG +H+FL G++SHP  ++IYSKLDEI  + K  GY P+ S+LLQL EE+++ EQ
Sbjct: 648 SSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQ 707

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           +LN+HSE+LAIA+GLIS   SQPIRIVKN+R+CGDCH  AKL+S+LY+R+ILLRDRYRFH
Sbjct: 708 SLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFH 767

Query: 643 HFRGGNCSCMDYW 655
           HFRGG CSC+DYW
Sbjct: 768 HFRGGKCSCLDYW 780



 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/477 (40%), Positives = 276/477 (57%), Gaps = 27/477 (5%)

Query: 11  TLSTPVISLPRHPNPTTLTVNN--GHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
            LSTP +SL +     T  V    G++     +   I QC N  QLKQIH  MLRT  F 
Sbjct: 44  ALSTP-LSLGQIAMNCTEAVKGEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFC 102

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           DPY+ASKL T  A+ + S L YA+ +F+QIPQPNLY WNTLIR Y+SS++P QSF+IFL 
Sbjct: 103 DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLH 162

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           ++++   FPN+FTFPF+ KAA+RL    +G  +HGMVIK+S   DLFI NSLI+FY   G
Sbjct: 163 MLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSG 222

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
              +A+ VF  +  KDVVSWN+MI+ F  GG  +KA+ L++EMEM++VKP+ +TMV+VLS
Sbjct: 223 APDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLS 282

Query: 249 ACAKKRDLEFGRWPNEAL--SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           ACAKK DLEFGRW    +  + F E  +  N   D +          + G ++    +  
Sbjct: 283 ACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYV---------KCGCINDAKDLFN 333

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
           KM ++ I       T+++D + K GN D+A  +F  +  +    W+ +I+ +   G  R 
Sbjct: 334 KMSEKDI----VSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRV 389

Query: 367 ALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           AL LF  MQ +K  KP+ VT    LCA +  G +D G      ++  + +       T +
Sbjct: 390 ALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKK-HDINLNCHLATSL 448

Query: 426 VDMLGRAGLLDEAVEF---IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +DM  + G L++A+E    +E+  +     VW A++GA  ++   + A    S +LE
Sbjct: 449 LDMYAKCGNLNKAMEVFHAVERKDVY----VWSAMIGALAMYGQGKAALDLFSSMLE 501


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 305/615 (49%), Positives = 432/615 (70%), Gaps = 16/615 (2%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           LIK    +  L   + +H   +++ +  D + A+ L   C   +   L+ A ++F  I +
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH-CYF-SCGDLDSACKVFTTIKE 194

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WN++I  +     P ++  +F ++  +     +  T   V+ A A++     G+ 
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +   + ++    +L ++N+++  Y  CG +  A  +F  + +KD V+W +M+ G+     
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           +E A E+   M  +++    V   A++SA       E    PNEAL +FHELQL KN+  
Sbjct: 314 YEAAREVLNSMPQKDI----VAWNALISA------YEQNGKPNEALIVFHELQLQKNMKL 363

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           ++ T VS LSACAQ+GA+++G  IH+ +KK GI++N ++T++LI MY+KCG+L+K+ EVF
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
           ++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           E    F+QME  YG+VP  KHY C+VD+LGR+G L++AV+FIE MPI P  SVWGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK GKW+NVSELRKHMRV+GLKKEP
Sbjct: 544 CKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEP 603

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P  S +LQ++EEE+++
Sbjct: 604 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           EQ+LNLHSE+LAI YGLIS E  + IR++KNLRVCGDCH+VAKLIS+LY+REI++RDRYR
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723

Query: 641 FHHFRGGNCSCMDYW 655
           FHHFR G CSC D+W
Sbjct: 724 FHHFRNGQCSCNDFW 738



 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 185/455 (40%), Positives = 279/455 (61%), Gaps = 27/455 (5%)

Query: 17  ISLPRHPN---PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSA 73
           +SLPRHPN   P   T NN    H     SLI++C +++QLKQ H  M+RTG F DPYSA
Sbjct: 10  LSLPRHPNFSNPNQPTTNNERSRH----ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSA 65

Query: 74  SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
           SKLF   AL +F+SLEYAR++FD+IP+PN + WNTLIRAY+S  +P+ S   FL +V  S
Sbjct: 66  SKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSES 125

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
             +PN++TFPF+IKAAA +    +GQ++HGM +KS+   D+F++NSLIH Y  CGDL  A
Sbjct: 126 QCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSA 185

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  I +KDVVSWNSMI+GFVQ G  +KA+EL+++ME E+VK   VTMV VLSACAK 
Sbjct: 186 CKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI 245

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
           R+LEFGR   +  S   E +++ N+        ++L    + G+++   ++   M++   
Sbjct: 246 RNLEFGR---QVCSYIEENRVNVNLTLAN----AMLDMYTKCGSIEDAKRLFDAMEE--- 295

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
           K N   TT ++D Y    + + A EV +++  +D+  W+ +I+ +   G   EAL +F  
Sbjct: 296 KDNVTWTT-MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 354

Query: 374 MQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           +Q +  +K N +T  + L AC+  G ++ GR   + ++  +G+       + ++ M  + 
Sbjct: 355 LQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKC 413

Query: 433 GLLDEAVEF---IEKMPIVPGASVWGALLGACKIH 464
           G L+++ E    +EK  +     VW A++G   +H
Sbjct: 414 GDLEKSREVFNSVEKRDVF----VWSAMIGGLAMH 444


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/607 (50%), Positives = 424/607 (69%), Gaps = 22/607 (3%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPN--LYTWNTL 109
           K +H   ++T    D +  + L   +  C       L+ A  +F+ I   N  + +WN++
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCG-----HLDLAYLVFEMIEGNNKDIVSWNSM 314

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +  +     P ++  +F + + N    PN  T   V+ A A+ +   +G+ +   + ++ 
Sbjct: 315 VTGFVQGGYPDKALDLF-ERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE 373

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              +L + N+ I  +  CG++ +A  +F  + K+DVVSW ++I G+ +      A +++ 
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFD 433

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVSV 288
            M  +++    V +     +         GR P EAL+IF ELQL+K+   PD+ T +S 
Sbjct: 434 SMPRKDIPAWNVLISGYEQS---------GR-PKEALAIFRELQLTKSGARPDQVTLLST 483

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           LSACAQLGAMDIG  IH  +KK+ I+LN  L TSLIDMY+K G+++KA+EVFH++ ++DV
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           FVWS MIAG AM+G G  A++LF  MQE +VKPN+VTFTN+LCACSHSGLVDEG+  F++
Sbjct: 544 FVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDE 603

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           ME VYGVVP  KHY+CMVD+LGRAG L+EA++FIE MP+ P ASVWGALLGAC IH N+E
Sbjct: 604 MERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLE 663

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE ACS LLE+EP NHGA VLLSN+YAKTG W+ VSELR+ MR SGLKKE GCSSIE++
Sbjct: 664 LAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G +H+F+ G+++HPL ++IY+KLDEI+ARL+S GYV N   +LQ VEEE+++E+AL LHS
Sbjct: 724 GTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHS 783

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           E++AIA+GLI  +  Q IRIVKNLRVC DCHTVAK++SK+Y R+I+LRDRYRFHHF GG+
Sbjct: 784 EKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGH 843

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 844 CSCQDYW 850



 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/482 (38%), Positives = 287/482 (59%), Gaps = 37/482 (7%)

Query: 1   MTDNPPQHMETLSTPVISLPRH--PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIH 58
           + D+  +  E +++   S+ +H  P P + T  N          +L +QC + KQLKQIH
Sbjct: 106 IADSEKEKEEWINSIGRSIVQHSSPTPASATATNVGDR------ALFQQCTSFKQLKQIH 159

Query: 59  TQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE 118
            QMLRT    DPY+AS+LFT  A  +FS+L+YAR++FDQIPQPNLY+WN LIRA ++S++
Sbjct: 160 AQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSD 219

Query: 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISN 178
           PIQS ++F++++++SP+ PN+FTFP +IKA A    F VG+A+HGM IK+SF DD+F+ N
Sbjct: 220 PIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLN 279

Query: 179 SLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           SLIHFYA CG L +AY VF MI    KD+VSWNSM++GFVQGG+ +KA++L+  M  E V
Sbjct: 280 SLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGV 339

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
            P+ VTMV+V+SACAK  +L  GR   +        ++  N+N    T + +   C   G
Sbjct: 340 HPNAVTMVSVMSACAKTMNLTLGR---KVCDYIDRNEMMMNLNVCNAT-IDMFVKC---G 392

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            ++I   +   M+K+ +       T++ID Y K      A ++F ++  +D+  W+ +I+
Sbjct: 393 EVEIARGLFDNMEKRDV----VSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLIS 448

Query: 357 GFAMYGCGREALDLFSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           G+   G  +EAL +F  +Q  K   +P+ VT  + L AC+  G +D G       E ++G
Sbjct: 449 GYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG-------EWIHG 501

Query: 415 VVPGVK------HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
            +   +        T ++DM  ++G +++A+E    +       VW A++    +H   E
Sbjct: 502 YIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGRGE 560

Query: 469 LA 470
            A
Sbjct: 561 AA 562


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 307/709 (43%), Positives = 429/709 (60%), Gaps = 95/709 (13%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  +L+  CK+ + LKQIH+Q+++TGL    ++ SKL   CA+  F +L YA  +F+ I
Sbjct: 33  HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            QPN + WNT+IR  S S+ P+ +   +++++      PN +TFPF++K+ A++   + G
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEG 151

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM------------------- 199
           + IHG V+K   E D F+  SLI+ YA  G+L  A  VF                     
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211

Query: 200 ------------IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
                       I  +D VSWN+MI+G+ Q G FE+A+  ++EM+  NV P+E TMV VL
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 248 SACA-----------------------------------------KKRDLEFG------- 259
           SACA                                         K RDL  G       
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 260 RWP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
            W              EAL++F ++Q S NV P++ TFVS+L ACA LGA+D+G  IHA 
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQS-NVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 308 MKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
           + K+ + L N  L TSLIDMY KCGN++ A +VF  +K + +  W+ MI+G AM+G    
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           AL+LF +M++   +P+ +TF  VL ACSH+GLV+ GR  F+ M   Y + P ++HY CM+
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMI 510

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+LGRAGL DEA   ++ M + P  ++WG+LLGAC++H NVEL E+A  HL ELEPEN G
Sbjct: 511 DLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPG 570

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
           A VLLSNIYA  G+WD+V+ +R  +   G+KK PGCSSIEV+  +H+FL G+  H   ++
Sbjct: 571 AYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQD 630

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           IY  LDEI   L+  G+VP+ S +L  ++EE  +E +L+ HSE+LAIA+GLIS +P   I
Sbjct: 631 IYKMLDEIDQLLEKAGHVPDTSEVLYDMDEE-WKEGSLSHHSEKLAIAFGLISTKPETTI 689

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           RIVKNLRVCG+CH+  KLISK++NREI+ RDR RFHHF+ G+CSCMDYW
Sbjct: 690 RIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/634 (44%), Positives = 414/634 (65%), Gaps = 30/634 (4%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           +P  SL + CK++  LKQIH++ ++TG+  +P   +K+ + C    F  + YAR++FD I
Sbjct: 15  NPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTI 74

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+P++++WN + + YS  A P     ++L+++  +   P+ +T+PF+ K   R V  ++G
Sbjct: 75  PEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVK-PDCYTYPFLFKGFTRSVALQLG 133

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG---- 214
           + +H  V+K   + ++F  N+LI+ Y++CG + MA  +F M  K DVV+WN+MISG    
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193

Query: 215 -------------FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
                        FV  G  + A + + +M     + D V+  A++    +    +    
Sbjct: 194 KKDVISWTAIVTGFVNTGQVDAARKYFHKMP----ERDHVSWTAMIDGYLRLNCYK---- 245

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EAL +F E+Q SK + PDEFT VSVL+ACAQLGA+++G  I   + K  +K + ++  
Sbjct: 246 --EALMLFREMQTSK-IKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LIDMY KCGN++ AL +F+T+  RD F W+ M+ G A+ GCG EAL++FS+M +A V P
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + VT+  VL AC+H+G+VDEG+ FF  M   +G+ P + HY CMVD+LG+AG L EA E 
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI 422

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+ MP+ P + VWGALLGAC+IH++ E+AE A   +LELEP N    VL  NIYA   KW
Sbjct: 423 IKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKW 482

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           D + ELR+ M   G+KK PGCS IE+NG +H+F+AG+ SHP  KEIY KL+++ + LK  
Sbjct: 483 DKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIA 542

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY PN S +   + EED +E A+  HSE+LAIA+GLI+  P   IRIVKNLR+C DCH V
Sbjct: 543 GYSPNTSEVFLDIAEED-KENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHV 601

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AKL+SK+Y+RE+++RDR RFHHFR G+CSC DYW
Sbjct: 602 AKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/613 (46%), Positives = 407/613 (66%), Gaps = 15/613 (2%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+++C N+++L+QIH QML+TGL  D   ASKL   CA     SL YAR +FD+I +PN 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           + WNT+IR YS+S EP ++ +++  ++Y+S P+  N +TFPF++KA + +      Q IH
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSALEETQQIH 141

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +IK  F  +++ +NSL++ Y+  GD+  A  +F  + ++D VSWNSMI G+ + G  E
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A E++  M   N+    ++  +++S C           P EAL++FH +Q +  +  D 
Sbjct: 202 MAYEIFNHMPERNI----ISWTSMISGCVGAGK------PKEALNLFHRMQ-TAGIKLDN 250

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              VS L ACA LG +D G  IHA +KK  I+++  L   LIDMY KCG+L++A+EVF  
Sbjct: 251 VALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRK 310

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ + V VW+ MI+G+A++G GREAL+ F +MQ A V+PN +TFT +L ACSH+GLV E 
Sbjct: 311 MEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEA 370

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           ++ F  ME ++G  P ++HY CMVD+LGRAGLL EA E IE MP+ P A++WGALL AC 
Sbjct: 371 KLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACH 430

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           IH N+EL +     L++++P + G  + L++I+A  G+W+  + +R+ M+  G+ K PGC
Sbjct: 431 IHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGC 490

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S I VNG  H+FLAG+ SHP  KEI   L++IV RL+  GY P     L L  E+  +E 
Sbjct: 491 SVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLG-DLLLDLEDKEKET 549

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           A++ HSE+LA+ +GLIS +P   IRIVKNLRVC DCHTV KLISK+Y REIL+RDR RFH
Sbjct: 550 AIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFH 609

Query: 643 HFRGGNCSCMDYW 655
            F+ GNC+C DYW
Sbjct: 610 LFKDGNCTCGDYW 622


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/613 (46%), Positives = 407/613 (66%), Gaps = 15/613 (2%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+++C N+++L+QIH QML+TGL  D   ASKL   CA     SL YAR +FD+I +PN 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           + WNT+IR YS+S EP ++ +++  ++Y+S P+  N +TFPF++KA + +      Q IH
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSASEETQQIH 141

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +IK  F  +++ +NSL++ Y+  GD+  A  +F  + ++D VSWNSMI G+ + G  E
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A E++  M   N+    ++  +++S C           P EAL++FH +Q +  +  D 
Sbjct: 202 MAYEIFNHMPERNI----ISWTSMISGCVGAGK------PKEALNLFHRMQ-TAGIKLDN 250

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              VS L ACA LG +D G  IHA +KK  I+++  L   LIDMY KCG+L++A+EVF  
Sbjct: 251 VALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRK 310

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ + V VW+ MI+G+A++G GREAL+ F +MQ A V+PN +TFT +L ACSH+GLV E 
Sbjct: 311 MEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEA 370

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           ++ F  ME ++G  P ++HY CMVD+LGRAGLL EA E IE MP+ P A++WGALL AC 
Sbjct: 371 KLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACH 430

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           IH N+EL +     L++++P + G  + L++I+A  G+W+  + +R+ M+  G+ K PGC
Sbjct: 431 IHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGC 490

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S I VNG  H+FLAG+ SHP  KEI   L++IV RL+  GY P     L L  E+  +E 
Sbjct: 491 SVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLG-DLLLDLEDKEKET 549

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           A++ HSE+LA+ +GLIS +P   IRIVKNLRVC DCHTV KLISK+Y REIL+RDR RFH
Sbjct: 550 AIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFH 609

Query: 643 HFRGGNCSCMDYW 655
            F+ GNC+C DYW
Sbjct: 610 LFKDGNCTCGDYW 622


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/678 (43%), Positives = 419/678 (61%), Gaps = 68/678 (10%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP    +++C  + QLKQIH QMLRT LF DP+SASK+   CAL    SL YAR +F+QI
Sbjct: 41  HPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQI 100

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P P  +T N++IR Y++   P Q+ ++F QL+      P+ FTFP + K+   L +   G
Sbjct: 101 PNPTTFTCNSIIRGYTNKNLPRQA-ILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---G 156

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H    K  F  D +I N+L++ Y+ CG L  A  VF  +  K VVSW +MI  + Q 
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK------------------------- 253
               +AI+L+R ME+ +VKP+E+T+V VL+ACA+                          
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT 276

Query: 254 ----------------RDLEFGRWPN--------------------EALSIFHELQLSKN 277
                           RDL F + P                     EALS+F+E+QLS  
Sbjct: 277 SALMDVYCKCGCYPLARDL-FNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS-G 334

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V  D+ T  S+L AC  LGA+++G  +H  ++K+ I+++  L T+L+DMY KCG+++ A+
Sbjct: 335 VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAM 394

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +  +DV  W+ +I G AM G G +AL+LF  MQ ++VKP+A+TF  VL ACSH+G
Sbjct: 395 RVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 454

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG  +FN M   YG+ P ++HY CMVDMLGRAG + EA + I+ MP+ P   V   L
Sbjct: 455 LVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGL 514

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+IH N+ +AE A   L+EL+P+N G  VLLSNIY+    W+   ++R+ M    +K
Sbjct: 515 LSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 574

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGCS+IEV G +H+F+ G+ SHP   EIY  LD+++ RLKS GYVP++S +L  ++E+
Sbjct: 575 KPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEK 634

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E  L+LHSE+LAIA+GL+S  P  PIR+VKNLRVC DCH+  K IS++YNREI++RD
Sbjct: 635 E-KENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRD 693

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF  G+CSC D+W
Sbjct: 694 RNRFHHFTKGSCSCRDFW 711


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/617 (45%), Positives = 403/617 (65%), Gaps = 12/617 (1%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           +P+   +  CK +K L QIH Q + TG+F D + AS++ +  AL    S+ YAR +F +I
Sbjct: 36  YPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRI 95

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            +P+++  NTLIRAY+ S  PI + + + ++  +S  FP+  TFP ++KA + +   R+G
Sbjct: 96  RKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLG 155

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           +AIH  V K  +  ++ +SN L+  YA CG +  A  VF    + D  SWN MI G+++ 
Sbjct: 156 EAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKC 215

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G F+ A  ++  M   +V    V+   +++   ++   +      E L +F ++ + + +
Sbjct: 216 GVFKSARRMFEAMPDRDV----VSWSVMINGYVQESRFK------EGLGLFQDM-MGEKI 264

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P+E   V+ LSACA LGAM+ G  I   M+++ ++L   L T+LIDMY+KCG++++ALE
Sbjct: 265 EPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALE 324

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VFH +K ++V  WS MI G A+ G G++AL+LFS+M+   VKPN VTF  +L ACSHS L
Sbjct: 325 VFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKL 384

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VDEG  FF+ M  +YG+ P   H+ CMVD+ GRAG+LD+A   I+ MP  P +++WGALL
Sbjct: 385 VDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALL 444

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            AC+IH + EL E     LLEL+P + G  VLLSNIYA  G+WD V+ELR+ MR   + K
Sbjct: 445 NACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSK 504

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PGCS I++   IH+F+AG+SSHP  + IY+KL E+   LK+ GY P+   +L  ++EE+
Sbjct: 505 TPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEE 564

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE+LAIA+GLI  +P   IRI KNLRVC DCH+  KLISK+YNREI++RDR
Sbjct: 565 -KETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDR 623

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFR G+CSCMD+W
Sbjct: 624 CRFHHFRDGSCSCMDFW 640


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/623 (43%), Positives = 403/623 (64%), Gaps = 15/623 (2%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-LEYARE 93
           +H+ +   S +++C   ++LKQIH +ML+TGL  D Y+ +K  + C   T S  L YA+ 
Sbjct: 11  EHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQI 70

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARL 152
           +FD   +P+ + WN +IR +S S EP +S +++ +++ +S P+  N +TFP ++KA + L
Sbjct: 71  VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH--NAYTFPSLLKACSNL 128

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
             F     IH  + K  +E+D++  NSLI+ YA+ G+  +A+ +F  I + D VSWNS+I
Sbjct: 129 SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+V+ G  + A+ L+R+M  +N       +   + A   K          EAL +FHE+
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK----------EALQLFHEM 238

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q S +V PD  +  + LSACAQLGA++ G  IH+ + K  I+++  L   LIDMY KCG 
Sbjct: 239 QNS-DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +++ALEVF  +K + V  W+ +I+G+A +G GREA+  F  MQ+  +KPN +TFT VL A
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CS++GLV+EG++ F  ME  Y + P ++HY C+VD+LGRAGLLDEA  FI++MP+ P A 
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +WGALL AC+IH+N+EL E     L+ ++P + G  V  +NI+A   KWD  +E R+ M+
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             G+ K PGCS+I + G  H+FLAG+ SHP  ++I SK   +  +L+  GYVP    +L 
Sbjct: 478 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLL 537

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            + ++D +E  ++ HSE+LAI YGLI  +P   IRI+KNLRVC DCH V KLISK+Y R+
Sbjct: 538 DLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRD 597

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFHHFR G CSC DYW
Sbjct: 598 IVMRDRTRFHHFRDGKCSCGDYW 620


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/649 (42%), Positives = 393/649 (60%), Gaps = 75/649 (11%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  S+++ C  +++LKQIHTQ+L  GL  DP    +     AL   ++L Y+ ++ D  
Sbjct: 10  HPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNS 69

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRV 157
             P L+T+N++IRA+S S+ P +SF  + ++++++ Y  P+ +TF F+++ +A+L+    
Sbjct: 70  QNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGT 129

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYA--------------IC---------------- 187
           G ++HG  +K  FE D  + + LI+ YA              IC                
Sbjct: 130 GSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAK 189

Query: 188 -GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
            GD+  A  +F  +  KD ++WN+MISG+VQ G   +A+ L+  M+ E VK +EV+MV+V
Sbjct: 190 MGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSV 249

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           LSAC+    L+ GRW                                           HA
Sbjct: 250 LSACSHLGALDQGRWA------------------------------------------HA 267

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            +++  +++   L T+LIDMY KCGN++KA+EVF  +K ++V+ WS+ I G AM G G +
Sbjct: 268 YIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEK 327

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
            L+LFS M++  V+PN +TF +VL  CS  GLV+EGR  F  M  VYG+ P ++HY CMV
Sbjct: 328 CLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMV 387

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+ GRAG LDEA+ FI  MP+ P    WGALL ACKI+ N+E+ E A   ++ELE +NHG
Sbjct: 388 DLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHG 447

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
           A VLLSNIYA +  WD VS +R+ M V G++K+PGCS IEV GE+H+F  G+ SHP   E
Sbjct: 448 AYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAE 507

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           I   L EI  RLK  GYV N + +   +EEE+ +E AL +HSE++AIA+GLIS+ P  PI
Sbjct: 508 IQVMLGEISRRLKLSGYVANTNPVFFDIEEEE-KEDALCMHSEKIAIAFGLISLSPDVPI 566

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           RIVKNLRVC DCH   K+ISK +NREI++RDR RFHHFR G CSC  YW
Sbjct: 567 RIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/620 (45%), Positives = 391/620 (63%), Gaps = 19/620 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +FSL + CK++ Q+KQ H  ++ TGL   P +A+KL       +F SL YA ++FDQIP+
Sbjct: 19  LFSL-ESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPK 77

Query: 101 PNLYTWNTLIRAYSS-SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           P+++ +NT+I+A++        S  IFL +V  S + PN +TF FV KA    +    G+
Sbjct: 78  PDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGE 137

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            I    IK   E +LF++N++I  YA  G +  A  VF     +D+ SWN MI G+V  G
Sbjct: 138 QIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSG 197

Query: 220 FFEKAIELYREMEMENVKPDEVTMVA--VLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
              +A E++ EM   +V     T++A  V   C K           EAL +FHE+ L   
Sbjct: 198 EIGRAKEMFDEMSERDV-VSWTTIIAGYVQVGCFK-----------EALDLFHEM-LQTG 244

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P+EFT  S L+ACA L A+D G  IH  + K  IK+N  L  SL+DMY KCG +D A 
Sbjct: 245 PPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAA 304

Query: 338 EVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +VFH        V+ W+ MI G+AM+G  +EA+DLF +M+  KV PN VTF  +L ACSH
Sbjct: 305 KVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSH 364

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
             LV+EGR +F  M   YG+ P ++HY CMVD+LGR+GLL EA E +  MP+ P A++WG
Sbjct: 365 GKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWG 424

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALLGAC+IH+++E  +     + EL+ ++ G  VLL+N+Y+ +G+WD    +R+ + VSG
Sbjct: 425 ALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSG 484

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
            KK PGCSSIE+NG  H+FL G+ SHP  K++Y  LDE+  +LK+ GYVP    +L  ++
Sbjct: 485 RKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDID 544

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E+ +E AL+ HSE+LAIA+GLI+  P   IRIVKNLRVC DCH   K ISK+Y REI++
Sbjct: 545 DEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIV 604

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RDR R+HHF+ G CSC DYW
Sbjct: 605 RDRIRYHHFKDGFCSCKDYW 624


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/647 (44%), Positives = 397/647 (61%), Gaps = 44/647 (6%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC-ALGTFSSLEYAREMFDQIP 99
           V SL++    + Q+ QIH  +++T L  + +  +KL     A  + + L YAR +FD+IP
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P+ + WNT+IRAY +S  P +S  +F Q+ +      + ++   VI+A  RL     GQ
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV------------------FVMIG 201
            +H  V+K     DLF+  +LI  YA  GD+ +A  +                  +V +G
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVG 185

Query: 202 K-------------KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           +             +D+VSWN+MI G    G    A +L+        + D ++  ++++
Sbjct: 186 EINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDR----TCERDLISWSSMIA 241

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           A AK R        NEAL +FHE+QL+ NV PD+ T VSVLSAC  +GA+ +G  IH  +
Sbjct: 242 AYAKARQ------SNEALRLFHEMQLA-NVLPDKVTMVSVLSACGDVGALGMGKMIHECI 294

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
           ++  I+++  L TSL+DMY KCG++D +L VF+ + +RDVF WS MI G A +G G  AL
Sbjct: 295 ERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELAL 354

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           D FS+M    +KPN VTF  VL ACSH GLVDEG  +F  M  VY V P ++HY C+VD+
Sbjct: 355 DHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDI 414

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
           LGRAG L EA+E I+ MP  P A VW ALLGAC+I++NVE+AE A  +LLELEP   G  
Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNY 474

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLSNIY++  +WD V  +R+ M+   ++K PG SSIEV+  +H+F+AG+ SHP  K+I 
Sbjct: 475 VLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKIL 534

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
             L EI ARLK+ GY P  + +LQ  +E++ +E AL  HSE+LAIA+GL+S  P   IRI
Sbjct: 535 RMLSEITARLKANGYAPLTASVLQDFDEKE-KENALAHHSEKLAIAFGLLSTAPGSTIRI 593

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VKNLRVC DCH   KLIS+ Y R I++RDR RFHHF  G+CSC DYW
Sbjct: 594 VKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/618 (44%), Positives = 395/618 (63%), Gaps = 18/618 (2%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC---ALGTFSSLEYAREMFDQ 97
           +FSL + C ++  LK IH  M+RT +  D ++AS+L   C   + GT S ++YA  +F Q
Sbjct: 21  LFSL-ETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGT-SLIDYASRIFSQ 78

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I  PNL+ +N +IR +S S  P Q+F  ++Q        P+  TFPF++K+  +L    +
Sbjct: 79  IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQ-SQRQGLLPDNLTFPFLVKSCTKLHCISM 137

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G   HG +IK  FE D+++ NSL+H YA  GD   A  +F  +   DVVSW SMI GF +
Sbjct: 138 GSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNK 197

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E A +L+ +M  +N+    VT   ++S  A+    +      +A+ +F  LQ S+ 
Sbjct: 198 CGDVESARKLFDQMPEKNL----VTWSTMISGYAQNNHFD------KAVELFKVLQ-SQG 246

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V  +E   VSV+S+CA LGA+++G + H  + K G+ LN  L T+L+DMY +CG++DKA+
Sbjct: 247 VRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAV 306

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +  RD   W+ +IAG AM+G    +L  F+ M EA + P  +TFT VL ACSH G
Sbjct: 307 WVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGG 366

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+ G   F  M+  + V P ++HY CMVD+LGRAG L+EA  F+ KMP+ P A VWGAL
Sbjct: 367 LVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGAL 426

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+IH+N E+ E     L++L P++ G  VLLSNIYA   +W+ V+E+R+ M+  GLK
Sbjct: 427 LGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLK 486

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S IE++G +HKF  G+SSHP   +I    +EI+ R+++ GY  N +  L  ++EE
Sbjct: 487 KPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEE 546

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E AL+ HSE+LAIA+G++  E   PIRIVKNLRVC DCHT  KLISK++ RE+++RD
Sbjct: 547 E-KESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRD 605

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHFR G CSCMDYW
Sbjct: 606 RNRFHHFRQGLCSCMDYW 623


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/619 (44%), Positives = 396/619 (63%), Gaps = 14/619 (2%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           H  P++ L   C  + +LKQ H+Q++R GL  D  +  ++   CA+     L YA E+FD
Sbjct: 20  HKLPLYGL-DSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFD 78

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +IP P+ Y +NT+ R Y           ++ ++++ S   PN+FT+P +I+A        
Sbjct: 79  KIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKS-VSPNKFTYPPLIRACCIDYAIE 137

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH  V+K  F  D F  N+LIH Y     L  A  VF  + ++DVVSW S+I+G+ 
Sbjct: 138 EGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYS 197

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q GF +KA E++  M   N     V+  A+++A  +   L      +EA ++F  ++L +
Sbjct: 198 QWGFVDKAREVFELMPERN----SVSWNAMIAAYVQSNRL------HEAFALFDRMRL-E 246

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           NV  D+F   S+LSAC  LGA++ G  IH  ++K GI+L+  L T++IDMY KCG L+KA
Sbjct: 247 NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKA 306

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            EVF+ +  + +  W+ MI G AM+G G  A++LF  M+   V P+ +TF NVL AC+HS
Sbjct: 307 SEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHS 366

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+ +F  M  V G+ PG++H+ CMVD+LGRAGLL+EA + I +MP+ P A V GA
Sbjct: 367 GLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGA 426

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           L+GAC+IH N EL E     ++ELEP N G  VLL+N+YA  G+W++V+++RK M   G+
Sbjct: 427 LVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV 486

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG S IE    + +F+AG  +HP  KEIY+KLDEI+  ++S GYVP+   +L  ++E
Sbjct: 487 KKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDE 546

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +E  L  HSE+LAIA+GL+  +P + +RI KNLR+C DCH  +KLISK+Y+REI++R
Sbjct: 547 EE-KENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIR 605

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFHHFR G CSC DYW
Sbjct: 606 DRNRFHHFRMGGCSCKDYW 624


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/595 (45%), Positives = 389/595 (65%), Gaps = 15/595 (2%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           MLRT LF DP+SASK+   CAL    SL YAR +F+QIP P  +T N++IR Y++   P 
Sbjct: 1   MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPR 60

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           Q+ ++F QL+      P+ FTFP + K+   L +   G+ +H    K  F  D +I N+L
Sbjct: 61  QA-ILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTL 116

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           ++ Y+ CG L  A  VF  +  K VVSW +MI  + Q     +AI+L+R ME   +  + 
Sbjct: 117 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME---IASNL 173

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                +++   +  D E      EALS+F+E+QLS  V  D+ T  S+L AC  LGA+++
Sbjct: 174 FCWNIMINGHVEDSDYE------EALSLFNEMQLS-GVKGDKVTMASLLIACTHLGALEL 226

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G  +H  ++K+ I+++  L T+L+DMY KCG+++ A+ VF  +  +DV  W+ +I G AM
Sbjct: 227 GKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAM 286

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G G +AL+LF  MQ ++VKP+A+TF  VL ACSH+GLV+EG  +FN M   YG+ P ++
Sbjct: 287 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIE 346

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVDMLGRAG + EA + I+ MP+ P   V   LL AC+IH N+ +AE A   L+EL
Sbjct: 347 HYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL 406

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           +P+N G  VLLSNIY+    W+   ++R+ M    +KK PGCS+IEV G +H+F+ G+ S
Sbjct: 407 DPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVS 466

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HP   EIY  LD+++ RLKS GYVP++S +L  ++E++ +E  L+LHSE+LAIA+GL+S 
Sbjct: 467 HPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKE-KENELSLHSEKLAIAFGLLST 525

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P  PIR+VKNLRVC DCH+  K IS++YNREI++RDR RFHHF  G+CSC D+W
Sbjct: 526 TPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 143/351 (40%), Gaps = 83/351 (23%)

Query: 23  PNPTTLTVNN---GHQHHPHP----VF-----------------SLIKQCKNIKQLKQIH 58
           PNPTT T N+   G+ +   P    +F                 SL K C  + + KQ+H
Sbjct: 39  PNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLH 98

Query: 59  TQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE 118
               + G   D Y  + L           L  AR++FD++   ++ +W T+I AY+    
Sbjct: 99  CHSTKLGFASDAYIQNTLMN--MYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDL 156

Query: 119 PIQSFMIFLQLVYNSPYF-------------------------------PNEFTFPFVIK 147
           P ++  +F ++   S  F                                ++ T   ++ 
Sbjct: 157 PHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLI 216

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A   L    +G+ +H  + K   E D+ +  +L+  YA CG +  A  VF  + +KDV++
Sbjct: 217 ACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMT 276

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-----FGRWP 262
           W ++I G    G   KA+EL+ EM+M  VKPD +T V VL+AC+    +      F   P
Sbjct: 277 WTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMP 336

Query: 263 NE-------------------ALSIFHELQLSKN--VNPDEFTFVSVLSAC 292
           N+                   A  I     L +N  + PD F  V +LSAC
Sbjct: 337 NKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/617 (42%), Positives = 398/617 (64%), Gaps = 15/617 (2%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           +P  S ++ C  +  LK IH  ++R    FD ++AS L +         L+YA ++F QI
Sbjct: 16  NPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNL--LDYAAQVFYQI 73

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             PNL+ +N+ IR +S S +P +SF  ++Q   N    P+  T+PF++KA  +     +G
Sbjct: 74  QNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNG-LVPDNLTYPFLVKACTQKGSLDMG 132

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
              HG +I+  F+ D+++ NSL+  Y+  GD+  A  VF  I   DVVSW SM++G+++ 
Sbjct: 133 IQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G    A +L+ +M  +N+    VT   ++S  AK        + ++A+ ++  LQ S+ V
Sbjct: 193 GDVTSARKLFDKMPEKNL----VTWSVMISGYAKNS------FFDKAIELYFLLQ-SEGV 241

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           + +E   VSV+++CA LGA+++G + H  + +  + +N  L T+L+DMY +CG++DKA+ 
Sbjct: 242 HANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIW 301

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RD   W+T+IAGFAM+G   +AL+ FSRM++A + P  +TFT VL ACSH GL
Sbjct: 302 VFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGL 361

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+ G   F  M+  Y + P ++HY CMVD+LGRAG L EA +F+ +MP+ P A +WGALL
Sbjct: 362 VERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALL 421

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH+N E+AE A   L+EL+PE+ G  VLLSNIYA+T KW+NV  +R+ M+  G+ K
Sbjct: 422 GACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVK 481

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG +  E++G++HKF  G+ +HP  ++I    +EI+ +++  GY  N    L  ++EE+
Sbjct: 482 PPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEE 541

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E  ++ HSE+LAIAY ++  +   PIRIVKNLRVC DCHT  KLISK+Y RE+++RDR
Sbjct: 542 -KESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDR 600

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+GG CSCMDYW
Sbjct: 601 NRFHHFKGGACSCMDYW 617


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/708 (40%), Positives = 413/708 (58%), Gaps = 94/708 (13%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP   L+ +C++I+  KQIH  +++TGL    ++ SKL    A+     + YA  +F+ I
Sbjct: 30  HPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            +PNL+ WN++IR  S S  P  + + F++++Y S   PN +TFPF++K+ A+L     G
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIY-SGVEPNSYTFPFLLKSCAKLASAHEG 148

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF------------VMIGK---- 202
           + IH  V+K  F  D+FI  SLI+ YA  G++  A  VF             +I      
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 203 ---------------KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV--- 244
                          KDVVSWN+MI+G+ Q G  ++A+ L+ +M   NV P+E T+V   
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268

Query: 245 --------------------------------AVLSACAKKRDLEFGR------------ 260
                                           A++   +K  DL+  R            
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI 328

Query: 261 -WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
            W              EAL++F E+ L+  V P E TF+S+L +CA LGA+D+G  IHA 
Sbjct: 329 SWNVMIGGYTHMCSYKEALALFREM-LASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY 387

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + K    ++  L+TSLID+Y KCGN+  A +VF  +K + +  W+ MI G AM+G   +A
Sbjct: 388 INKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKA 447

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
            +LFS+M    ++PN +TF  +L AC H+GLVD G+ FF+ M   Y + P  +HY CM+D
Sbjct: 448 FELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMID 507

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LGRAGL +EA   ++ M + P  ++WG+LLGAC+ H  VEL E     L ELEP+N GA
Sbjct: 508 LLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGA 567

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
            VLLSNIYA  GKWD+V+ +R  +   G+KK PGC++IEV+  +H+FL G+  HP  ++I
Sbjct: 568 YVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDI 627

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
           Y  L+E+  +LK FG+V + S +L  ++EE  +E AL+ HSE+LAIA+GLIS +P  PIR
Sbjct: 628 YRMLEEVDEQLKVFGFVADTSEVLYDMDEE-WKEGALSHHSEKLAIAFGLISTKPGTPIR 686

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           I+KNLRVC +CH+  KLISK++NREI+ RDR RFHHF+ G+CSC DYW
Sbjct: 687 IIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/611 (43%), Positives = 391/611 (63%), Gaps = 15/611 (2%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-LEYAREMFDQIPQPNLYT 105
           +C   ++LKQIH +ML+TGL  D Y+ +K  + C   T S  L YA+ +FD   +P+ + 
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQ-LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           WN +IR +S S EP +S +++ + L  ++P+  N +TFP ++KA + L        IH  
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPH--NAYTFPSLLKACSNLSALEETTQIHAQ 169

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           + K  +E+D++  NSLI+ YA  G+  +A+ +F  I K D VSWNS+I G+ + G  + A
Sbjct: 170 ITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           + L+R+M  +N       +   + A   K          EAL +FHE+Q S +V PD  +
Sbjct: 230 LTLFRKMVEKNAISWTTMISGYVQAGMHK----------EALQLFHEMQNS-DVEPDNVS 278

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
             + LSACAQLGA++ G  IH+ + K  I+++  L   LIDMY KCG++ +ALEVF  ++
Sbjct: 279 LANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQ 338

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            + V  W+ +I+G+A +G GREA+  F  MQ+  +KPN +TFT VL ACS++GLV+EG++
Sbjct: 339 RKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKL 398

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            F  ME  Y + P ++HY C+VD+L RAGLLDEA  FI++MP+ P A +WGALL AC+IH
Sbjct: 399 IFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 458

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           +N+EL E     L+ ++P + G  V  +NI+A   KWD  +E R+ M+  G+ K PGCS+
Sbjct: 459 KNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCST 518

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           I + G  H+FLAG+ SHP  ++I SK   +  +L+  GYVP    +L  + ++D +E  +
Sbjct: 519 ISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIV 578

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
           + HSE+LAI YGLI  +P   IRI+KNLRVC DCH V KLISK+Y R+I++RDR RFHHF
Sbjct: 579 HQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHF 638

Query: 645 RGGNCSCMDYW 655
           R G CSC DYW
Sbjct: 639 RDGKCSCGDYW 649



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 43/298 (14%)

Query: 36  HHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYA 91
           H+ +   SL+K C N+  L+   QIH Q+ + G   D Y+ + L     A G F   + A
Sbjct: 142 HNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNF---KLA 198

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV--------------------- 130
             +FD+IP+P+  +WN++I+ Y+ + +   +  +F ++V                     
Sbjct: 199 HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHK 258

Query: 131 ---------YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
                     NS   P+  +    + A A+L     G+ IH  + K+    D  +   LI
Sbjct: 259 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLI 318

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
             YA CGD+  A  VF  I +K V +W ++ISG+   G   +AI  + EM+   +KP+ +
Sbjct: 319 DMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 378

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
           T   VL+AC+    +E G+       IF+ ++   N+ P    +  V+   ++ G +D
Sbjct: 379 TFTTVLTACSYTGLVEEGKL------IFYNMERDYNLKPTIEHYGCVVDLLSRAGLLD 430


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/632 (43%), Positives = 398/632 (62%), Gaps = 28/632 (4%)

Query: 46  KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           K   +++ L Q+H  +LR+G F D Y +  L    A   FS+ ++A ++F  IP PN++ 
Sbjct: 41  KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN +I+    + +  ++   + ++V ++   PN+FT+P + KA +     + G+ IHG V
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHV 158

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K     D+ I ++ IH YA  G L  A  +F   G+ DVV WN+MI G+++ G  E A 
Sbjct: 159 VKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAK 217

Query: 226 ELYREMEMENVKPDEVTMVAVLSAC----AKK-------RD-----------LEFGRWPN 263
            L+ +M ++N+    V +  +        A+K       RD           +  GR+  
Sbjct: 218 GLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRY-K 276

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL IF ++Q  +   P  F   SVL+AC+ +GA+D G  +HA +K+  IKL+  L T+L
Sbjct: 277 EALEIFQQMQ-REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTAL 335

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMY KCG LD   EVF  +K R++F W+ MI G A++G   +AL+LFS++QE ++KPN 
Sbjct: 336 LDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +T   VL AC+H+G VD+G   F  M   YGV P ++HY CMVD+LGR+GL  EA + I 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            MP+ P A+VWGALLGAC+IH N +LAE     LLELEP+N G  VLLSNIYAK G++D+
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           VS++RK M+  G+K  PG S +++NG +H+F  G+ SHP  KEIY KL  I  RL+  G+
Sbjct: 516 VSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
            P+ S +L  ++EE+ +E A+N HSE+LAIA+GLI+  P + I IVKNLRVC DCH+  K
Sbjct: 576 SPDTSQVLFDIDEEE-KETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATK 634

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LIS++++REI++RDR R+HHF+ G CSC D+W
Sbjct: 635 LISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/699 (38%), Positives = 418/699 (59%), Gaps = 63/699 (9%)

Query: 17  ISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL 76
           ++LP  P  T     +      +P   +++QCK I+ L +IH  +++T L   P  A  L
Sbjct: 3   VTLPLLPAKTPTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENL 62

Query: 77  FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
               A+   +S++YA  +F QI +P+   +N +IR ++    P ++ ++F ++  NS   
Sbjct: 63  LESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ- 121

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+EFTFP ++K  +RL     G+ IH +++K  F    F+ N+LIH YA CG++ +A  V
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELY---------------------------- 228
           F  + +++V +WNSM +G+ + G +E+ ++L+                            
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241

Query: 229 -------REMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------WP------ 262
                  R +E + +K +   + +++   AK   ++  R             W       
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY 301

Query: 263 ------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EAL +FHE+Q   N++P+E T VS+LS+CA LGA++ G  +H  +KK+ +KL 
Sbjct: 302 SQASRCREALDLFHEMQ-KANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLT 360

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+L+D Y KCG+++ ++EVF  +  ++V  W+ +I G A  G G++AL+ F  M E
Sbjct: 361 VTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLE 420

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             V+PN VTF  VL ACSH+GLVDEGR  F  M   +G+ P ++HY CMVD+LGRAGL++
Sbjct: 421 KNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIE 480

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA +FI+ MPI P A +W  LL +CK+H+NVE+ E +   L+ LEP + G  +LLSNIYA
Sbjct: 481 EAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYA 540

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             G+W++  ++R  M+  G+KK PGCS IE++G IH+F A ++ H   +EIY+ +++++ 
Sbjct: 541 SVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMK 600

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           ++KS GYVPN +   +L  EED +E +++ HSE+LAIA+GLI   P   IRI KNLRVC 
Sbjct: 601 QIKSAGYVPNTAE-ARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCT 659

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   KL+SK++NREI++RDR RFHHF+ G+CSC DYW
Sbjct: 660 DCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/623 (43%), Positives = 403/623 (64%), Gaps = 27/623 (4%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           CK ++ LKQ+H QM++T    DP +A++L    A+     L+YAR++F  + +PN +++N
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           TLIRA S S +P  + ++F+++V +    PN FTFP V KA  R  + R G+ +HG+ +K
Sbjct: 81  TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFV----------MIGKK-----DVVSWNSMI 212
              + D F+ ++++  Y  CG +  A+ +F           +  KK     DVV WN MI
Sbjct: 141 FGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMI 200

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+V+ G  E A  L+ EM   +V    V+   +++  A+    +      EA+ +F E+
Sbjct: 201 DGYVRIGELEVARNLFDEMPQRSV----VSWNVMIAGYAQSGHFK------EAVEVFREM 250

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q+++ V P+  T VSVL A ++LGA+++G  +H    +  I ++  L ++LIDMY KCG+
Sbjct: 251 QMAE-VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGS 309

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           ++KAL+VF  +  R+V  WST+IAG AM+G  ++ LD F  M+ A V P+ VT+  +L A
Sbjct: 310 IEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSA 369

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH+GLV+EGR FF+ M  V G+ P ++HY CMVD+LGRAGLL+E+ E I  MPI P   
Sbjct: 370 CSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDV 429

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W ALLGACK+H NVE+ +    HL+EL P + G+ V LSNIYA  G W+ V+++R  M+
Sbjct: 430 IWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMK 489

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              ++K+PGCS IE++G IH+FL  + SHP  K+I+S L E+   L   GY PN + +L 
Sbjct: 490 EMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLT 549

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            ++EED +E +LN HSE++AIA+GLIS +P  P+RI KNLR+C DCH+  KLISK+Y R+
Sbjct: 550 NMDEED-KESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRK 608

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFHHF  G+CSCMDYW
Sbjct: 609 IIVRDRKRFHHFVNGSCSCMDYW 631


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/622 (43%), Positives = 397/622 (63%), Gaps = 20/622 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  SL+  C  +K++KQIH Q++  G+  +P+   +     AL   ++L+YA ++ +  
Sbjct: 10  HPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHN 69

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY--NSPYFPNEFTFPFVIKAAARLVQFR 156
             P L+T N++IRAYS S+ P +SF  +  +++  N+   P+ +TF F+++  A+L    
Sbjct: 70  NNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHV 129

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G  +HG VIK  FE D  +   L+  YA  G L+  + VF    + D+V+  +M++   
Sbjct: 130 TGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACA 189

Query: 217 QGGFFEKAIELYREMEMENVKPDEVT---MVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           + G  + A +++ EM     + D VT   M+A  + C + R         EAL +FH +Q
Sbjct: 190 KCGDIDFARKMFDEMP----ERDHVTWNAMIAGYAQCGRSR---------EALDVFHLMQ 236

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           + + V  +E + V VLSAC  L  +D G  +HA +++  +++   L T+L+DMY KCGN+
Sbjct: 237 M-EGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNV 295

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           D+A++VF  +K R+V+ WS+ I G AM G G E+LDLF+ M+   V+PN +TF +VL  C
Sbjct: 296 DRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGC 355

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           S  GLV+EGR  F+ M  VYG+ P ++HY  MVDM GRAG L EA+ FI  MP+ P    
Sbjct: 356 SVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGA 415

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           W ALL AC++++N EL E A   ++ELE +N GA VLLSNIYA    W++VS LR+ M+ 
Sbjct: 416 WSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKA 475

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            G+KK PGCS IEV+GE+H+F+ G+ SHP   EI  KL+EI   L+  GYV N + +L  
Sbjct: 476 KGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFD 535

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           +EEE+ +E AL+ HSE++AIA+GLIS++   PIR+V NLR+C DCH VAK+ISK++NREI
Sbjct: 536 IEEEE-KEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREI 594

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RDR RFHHF+ G CSC DYW
Sbjct: 595 IVRDRNRFHHFKDGECSCKDYW 616


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/632 (42%), Positives = 397/632 (62%), Gaps = 28/632 (4%)

Query: 46  KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           K   +++ L Q+H  +LR+G F D Y +  L    A   FS+ ++A ++F  IP PN++ 
Sbjct: 41  KSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN +I+    + +  ++   + ++V ++   PN+FT+P + KA +     + G+ IHG V
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHV 158

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K     D+ I ++ I  YA  G L  A  +F   G+ DVV WN+MI G+++ G  E A 
Sbjct: 159 VKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAK 217

Query: 226 ELYREMEMENVKPDEVTMVAVLSAC----AKK-------RD-----------LEFGRWPN 263
            L+ +M ++N+    V +  +        A+K       RD           +  GR+  
Sbjct: 218 GLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRY-K 276

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL IF ++Q  +   P  F   SVL+AC+ +GA+D G  +HA +K+  IKL+  L T+L
Sbjct: 277 EALEIFQQMQ-REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTAL 335

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMY KCG LD   EVF  +K R++F W+ MI G A++G   +AL+LFS++QE ++KPN 
Sbjct: 336 LDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +T   VL AC+H+G VD+G   F  M   YGV P ++HY CMVD+LGR+GL  EA + I 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            MP+ P A+VWGALLGAC+IH N +LAE     LLELEP+N G  VLLSNIYAK G++D+
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           VS++RK M+  G+K  PG S +++NG +H+F  G+ SHP  KEIY KL  I  RL+  G+
Sbjct: 516 VSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
            P+ S +L  ++EE+ +E A+N HSE+LAIA+GLI+  P + I IVKNLRVC DCH+  K
Sbjct: 576 SPDTSQVLFDIDEEE-KETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATK 634

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LIS++++REI++RDR R+HHF+ G CSC D+W
Sbjct: 635 LISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/664 (41%), Positives = 402/664 (60%), Gaps = 76/664 (11%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+++CK++ QLKQIH+  ++ GL  DP   +++   C      ++ YA ++FD IP P+
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPS 71

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ WNT+I+ YS  + P     ++L L+  S   P+ FTFPF +K   R +  + G+ + 
Sbjct: 72  MFIWNTMIKGYSKISHPENGVSMYL-LMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              +K  F+ +LF+  + IH +++CG + +A+ VF M    +VV+WN M+SG+       
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY------- 183

Query: 223 KAIELYREMEMENVKPDEVT-MVAVLSACAKKRDLEFGR--------------------- 260
                        VK  +++ M+ VLSAC+K +DLE+G+                     
Sbjct: 184 -----------NRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEM 232

Query: 261 -----------------WPN------------EALSIFHELQLSKNVNPDEFTFVSVLSA 291
                            W               AL++F E+Q+S NV PDEFT VS+L A
Sbjct: 233 DEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMS-NVKPDEFTMVSILIA 291

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CA LGA+++G  +   + K   K + ++  +L+DMY KCGN+ KA +VF  +  +D F W
Sbjct: 292 CALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTW 351

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +TMI G A+ G G EAL +FS M EA V P+ +T+  VLCAC    +VD+G+ FF  M  
Sbjct: 352 TTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTM 407

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            +G+ P V HY CMVD+LG  G L+EA+E I  MP+ P + VWG+ LGAC++H+NV+LA+
Sbjct: 408 QHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLAD 467

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A   +LELEPEN    VLL NIYA + KW+N+ ++RK M   G+KK PGCS +E+NG +
Sbjct: 468 MAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNV 527

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           ++F+AG+ SHP  KEIY+KL+ ++  L   GY P+ S +   + EED +E AL  HSE+L
Sbjct: 528 YEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEED-KETALYRHSEKL 586

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           AIAY LIS  P   IRIVKNLR+C DCH +AKL+S+ YNRE++++D+ RFHHFR G+CSC
Sbjct: 587 AIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSC 646

Query: 652 MDYW 655
            ++W
Sbjct: 647 NNFW 650


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/617 (43%), Positives = 395/617 (64%), Gaps = 18/617 (2%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF-DQIPQ 100
            S +++C    +LKQIH +ML++GL  DPY+ +K  +     + S   YA ++F +   +
Sbjct: 15  LSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLS--FCLSSSFSSYAHDVFFNGFDR 72

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQ-LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           P+ + WN +IR  S S +P +S +++ + L  ++P+  N +TFPF++KA + L  F+   
Sbjct: 73  PDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPH--NAYTFPFLLKACSNLSAFQETT 130

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  + K  +  D++  NSLI+ YA+ G+   A+ +F  I + D VSWNS+I G+V+ G
Sbjct: 131 QIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAG 190

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             + A+ L+R+M  +N      TM++        +         EAL +FHE+Q S NV 
Sbjct: 191 EMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNK---------EALQLFHEMQNS-NVP 240

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD  +  S LSAC+QLGA++ G  IH+   K   +++  L   LIDMY KCG +++AL V
Sbjct: 241 PDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGV 300

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +K++ V VW+ +I+G+A +G GREA+  F  MQ   VKPNA+TFT VL ACS++GLV
Sbjct: 301 FKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLV 360

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+  FN +E  Y + P ++HY CMVD+LGRAGLL+EA  FI+KMP+ P A +WG+LL 
Sbjct: 361 EEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLK 420

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH+N+EL E     L+E++  + G  V ++NI+A   KWD  +E R+ MR  G+ K 
Sbjct: 421 ACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKV 480

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN-RSHLLQLVEEED 578
           PGCS+I + G  H+FLAG+ SH   +EI +K   +  +L+  GYVP     LL LV++E+
Sbjct: 481 PGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEE 540

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E  ++ HSE+LAI YGL+  +P   IRI+KNLRVC DCH V  LISK+Y R+I++RDR
Sbjct: 541 -KEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDR 599

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G CSC DYW
Sbjct: 600 TRFHHFKDGKCSCGDYW 616


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/674 (41%), Positives = 406/674 (60%), Gaps = 65/674 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L   C +I + KQ H  +LRT L  +P  +SKL +  AL     L YAR++F Q+  P+ 
Sbjct: 17  LKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDP 76

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           +  NT+IR Y+ S  P ++  ++  +V       N +T+PFV+ A ARL   ++G+  H 
Sbjct: 77  FICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDN-YTYPFVLAACARLGAVKLGRRFHC 135

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            V+K+ F  DLF+ N+LI FY  CG    A  VF     +DVV+WN MI+  +  G  EK
Sbjct: 136 EVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEK 195

Query: 224 AIELYREM-EMENVKPDEVTMV-----------------------------------AVL 247
           A +L  EM +++N++PDEVTMV                                   A+L
Sbjct: 196 AFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAIL 255

Query: 248 SACAKKRDLE-----FGR--------WPN------------EALSIFHELQLSKNVNPDE 282
               K  D+E     F R        W +            EAL++F ++QL+K +  DE
Sbjct: 256 DMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK-IELDE 314

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T V VLSACAQ GA+D G  IH  + K  I  +  L T+L+DMY KCG++D AL+VF  
Sbjct: 315 ITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRR 374

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ R+VF W+ +I G AM+G G +A+ LF +M+  K+ P+ VTF  +LCACSH+GLVDEG
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 434

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              F  M+  + + P ++HY C+VD+L RA  +D+A+ FIE MPI   + +W  LLGAC+
Sbjct: 435 LAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACR 494

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
              + +LAE     ++ELEP++ G  V+LSN+YA   +WD+  +LRK M+  G++K PGC
Sbjct: 495 SGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGC 554

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQE 581
           S IE+NG IH+F+AG+ SH   ++IY+ ++E+  R+    G+VP  +++L  +EEE+ +E
Sbjct: 555 SWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEE-KE 613

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            +L LHSE+LAIA GLIS     PIRIVKNLRVC DCH+  K+ SK+YNREI+ RDR RF
Sbjct: 614 HSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRF 673

Query: 642 HHFRGGNCSCMDYW 655
           HHF+ G+CSCMD+W
Sbjct: 674 HHFKEGSCSCMDFW 687


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/624 (41%), Positives = 403/624 (64%), Gaps = 21/624 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +F  I +CK  + LKQIH   ++TG    P +A++L     L T   ++YAR+ F QI  
Sbjct: 18  LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHH 77

Query: 101 PNLYTWNTLIRAYSSS-------AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           PN ++WNT+IRA + S          +++ + F  ++ +    PN+FTFP V+KA A+L 
Sbjct: 78  PNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLA 137

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMI 212
           +   G+ +HG V+K     D F+ ++L+  Y +CG +  A+ +F     + +VV WN MI
Sbjct: 138 RIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMI 197

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+V+ G    + EL+  M  ++V    V+   ++S CA+    +      EA+ +FH++
Sbjct: 198 DGYVRMGDLRASRELFDSMPNKSV----VSWNVMISGCAQNGHFK------EAIEMFHDM 247

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           QL  +V P+  T VSVL A ++LGA+++G  +H   +K  I+++  L ++LIDMY+KCG+
Sbjct: 248 QLG-DVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGS 306

Query: 333 LDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           +DKA++VF  ++++ +   WS +I G AM+G  R+ALD F RMQ+A V P+ V +  VL 
Sbjct: 307 IDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLS 366

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH+GLV+EGR  +  M  + G++P ++HY CMVD+LGRAG L+EA + I  MP+ P  
Sbjct: 367 ACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDD 426

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            +  ALLGACK+H N+E+ E     L+   P + G+ V LSN++A  G W+ V ++R  M
Sbjct: 427 VILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKM 486

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           +   ++K+PGCS IE++G IH+FL  + SHP  + I+S L+E+  RL+S GY PN + +L
Sbjct: 487 KELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVL 546

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             ++E++ ++ AL+ HSE++AIA+GLIS  P  P++IVKNLRVC DCH+  KL+SK+YNR
Sbjct: 547 LNMDEKE-KQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNR 605

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           +I++RDR RFHHF  G+CSCMDYW
Sbjct: 606 KIIVRDRKRFHHFENGSCSCMDYW 629


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 392/617 (63%), Gaps = 49/617 (7%)

Query: 42  FSLIKQCKNIK-QLKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSSLEYAREMFDQI 98
            SL++ C + K +LKQIH   +R G+  +     K  +FT  +L   + + YA  +F  I
Sbjct: 21  ISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLS--APMSYAYNVFTVI 78

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             PN++TWNT+IR Y+ S  P  +F+ + Q+V  S   P+  T+PF++KA ++ +  R G
Sbjct: 79  HNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVV-SCVEPDTHTYPFLLKAISKSLNVREG 137

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           +AIH + I++ FE  +F+ NSL+H YA CGD   AY VF ++ ++D+V+WNSMI+GF   
Sbjct: 138 EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALN 197

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G                                          PNEAL++F E+ + + V
Sbjct: 198 G-----------------------------------------RPNEALTLFREMSV-EGV 215

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD FT VS+LSA A+LGA+++G ++H  + K G+  N ++T SL+D+Y KCG + +A  
Sbjct: 216 EPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQR 275

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  R+   W+++I G A+ G G EAL+LF  M+   + P+ +TF  VL ACSH G+
Sbjct: 276 VFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGM 335

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +DEG  +F +M+   G++P ++HY CMVD+L RAGL+ +A E+I+ MP+ P A +W  LL
Sbjct: 336 LDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLL 395

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC IH ++ L E A SHLL LEP++ G  VLLSN+YA   +W +V  +R+ M   G+KK
Sbjct: 396 GACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKK 455

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG S +E+   +++F  G+ SHP  +++Y+ L++I   LK  GYVP+ +++L  +EEE+
Sbjct: 456 TPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEE 515

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +EQAL+ HSE++AIA+ L++  P  PIR++KNLRVC DCH   KLI+K+Y+REI++RDR
Sbjct: 516 -KEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDR 574

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFRGG+CSC DYW
Sbjct: 575 SRFHHFRGGSCSCKDYW 591


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/609 (43%), Positives = 397/609 (65%), Gaps = 18/609 (2%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +KQLKQI  QM++T +  +P  A+K  T C       L YA+ +F+ I  PN + WN +I
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           RAYS+S EP  +F+ + Q++ +S P+  N +TFPF+++A   L+       +HG+VIK  
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPH--NSYTFPFLLRACRNLLAMGEALQVHGLVIKLG 118

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           F  D+F  N+L+H YA+CG++  A  +F  I ++D VSWN MI G+++ G  + A  ++ 
Sbjct: 119 FGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFL 178

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
           +M ++NV    V+  +++S       +E G+   EALS+ +E+Q +     D     S+L
Sbjct: 179 DMPLKNV----VSWTSLISGL-----VEAGQ-SVEALSLCYEMQ-NAGFELDGVAIASLL 227

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RD 347
           +ACA LGA+D G  +H  +   G+ ++  +  +L++MY KCG++++AL VF  +K   +D
Sbjct: 228 TACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKD 287

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V++W+ MI GFA++G G EAL+ F+RM+   ++PN++TFT VL ACS+ GLV+EG+  F 
Sbjct: 288 VYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFK 347

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M+  Y V P ++HY CMVD+LGR+G LDEA E I+KMP+ P A +WGALL AC IH + 
Sbjct: 348 SMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDF 407

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            L     +HL+E++ ++ G  + L+ I A  GKW   +E+R  M+  G+   PG SS+ +
Sbjct: 408 LLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTL 467

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQEQALNL 586
           NG +H+FLAG   HP  ++I  KL +I  RL+   GY P    LL  +E E+ +E A+  
Sbjct: 468 NGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEE-KETAMAQ 526

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+GLI+ +P   IR++KNLR+C DCHTVAKL+S++Y+REI++RDR RFHHFR 
Sbjct: 527 HSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRD 586

Query: 647 GNCSCMDYW 655
           G+CSC DYW
Sbjct: 587 GSCSCKDYW 595


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 389/618 (62%), Gaps = 14/618 (2%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           +P   L++ C N + LK IH  MLRT LFFD ++AS+L   C   T + L YA  +  QI
Sbjct: 18  NPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQI 77

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             PNL+ +N LIR  S+S  P  SF  +++ +      P+  T PF++KA A+L    +G
Sbjct: 78  QNPNLFIYNALIRGCSTSENPENSFHYYIKAL-RFGLLPDNITHPFLVKACAQLENAPMG 136

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
              HG  IK  FE D ++ NSL+H YA  GD+  A  VF  + + DVVSW  MI+G+ + 
Sbjct: 137 MQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRC 196

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  + A EL+  M   N+    VT   ++S  A+    E      +A+  F  LQ ++ V
Sbjct: 197 GDAKSARELFDRMPERNL----VTWSTMISGYARNNCFE------KAVETFEALQ-AEGV 245

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             +E   V V+S+CA LGA+ +G + H  + +  + LN  L T+++DMY +CGN++KA+ 
Sbjct: 246 VANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVM 305

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  +DV  W+ +IAG AM+G   +AL  FS M +    P  +TFT VL ACSH+G+
Sbjct: 306 VFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGM 365

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+ G   F  M+  +GV P ++HY CMVD+LGRAG L +A +F+ KMP+ P A +W ALL
Sbjct: 366 VERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALL 425

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH+NVE+ E     LLE++PE  G  VLLSNIYA+  KW +V+ +R+ M+  G++K
Sbjct: 426 GACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRK 485

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV-ARLKSFGYVPNRSHLLQLVEEE 577
            PG S IE++G++H+F  G+ +HP  ++I    ++I+  ++K  GYV N +  +  ++EE
Sbjct: 486 PPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEE 545

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E AL+ HSE+LAIAYG++ +    PIRIVKNLRVC DCHT  KLISK++  E+++RD
Sbjct: 546 E-KEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRD 604

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF+ G CSCMDYW
Sbjct: 605 RNRFHHFKEGTCSCMDYW 622


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/640 (44%), Positives = 399/640 (62%), Gaps = 23/640 (3%)

Query: 18  SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           S+ R PNP T   +N        + SL   CK ++ LKQ+H Q++       P+  S L 
Sbjct: 53  SMSRTPNPLTNPPSNPQ------ILSLFNPCKTLRHLKQVHAQIITH--HNSPFQLSALA 104

Query: 78  TPCALGTFSS-LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           +  AL  F + L YA+ +F  +  P    +N+LIRA SSS  P+++  ++  ++  S   
Sbjct: 105 SLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTML-QSGLK 163

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+  T+PFVIKA         G  +H  V+KS FE D +I +SLIH YA   DL  A  +
Sbjct: 164 PDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQL 223

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F +   +DVVSWN+MI G+V+      A  ++  M   +V     TM+   + C K    
Sbjct: 224 FNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWN-TMINGYAICGK---- 278

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                PNEAL++F +++ +  V P E T VS+LSACA LGA+D G+ +H  +    I++N
Sbjct: 279 -----PNEALALFDQMR-AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 332

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + T+L+DMY KCG +  A +VF+ ++S+DV  W+T+IAG A++G  +EA  LF  M+E
Sbjct: 333 SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           A V+PN +TF  +L ACSH+G+VDEG+   + M   YG+ P V+HY C++D+L RAG L+
Sbjct: 393 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLE 452

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA+E I  MP+ P  S  GALLG C+IH N EL E     L+ L+P + G  +LLSNIYA
Sbjct: 453 EAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYA 512

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              KWD+  ++R  M+V+G+ K PG S IE+ G +H+F+AG+ SHP   +IY KL+EI  
Sbjct: 513 AAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHT 572

Query: 557 RLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           RLKS  GY  +  ++L  +EEED +E AL +HSE+LAIAYGL+ ++  + IRIVKNLRVC
Sbjct: 573 RLKSAIGYSADTGNVLLDMEEED-KEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVC 631

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH V KLISK+Y REI++RDR RFHHF  G CSC+D+W
Sbjct: 632 RDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 400/621 (64%), Gaps = 26/621 (4%)

Query: 43  SLIKQCKNIK--QL-KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C  +   QL K+IH  +L+ GL  D +  + L      G  + +EYAR +FD++ 
Sbjct: 129 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALM--LMYGECACVEYARLVFDKMM 186

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF---PNEFTFPFVIKAAARLVQFR 156
           + ++ +W+T+IR+ S + E    F + L+L+    +    P+E     ++   A     R
Sbjct: 187 ERDVVSWSTMIRSLSRNKE----FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 242

Query: 157 VGQAIHGMVIKSSFEDDLFI--SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           +G+A+H  VI++S  + + +  + +L+  YA CG L +A  +F  + +K VVSW +MI+G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
            ++    E+A  L+   +  +V    +   A+LSA A+   ++      +A ++F +++ 
Sbjct: 303 CIRSNRLEEARALFDSTQNRDV----MIWTAMLSAYAQANCID------QAFNLFDQMRT 352

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  V P + T VS+LS CA  GA+D+G  +H+ + K+ ++++C L T+L+DMY KCG+++
Sbjct: 353 S-GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDIN 411

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  +F    SRD+ +W+ +I GFAM+G G EALD+F+ M+   VKPN +TF  +L ACS
Sbjct: 412 AAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 471

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GLV EG+  F +M   +G+VP ++HY CMVD+LGRAGLLDEA E I+ MPI P   VW
Sbjct: 472 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 531

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GAL+ AC++H+N +L E A + LLE+EPEN G  VL+SNIYA   +W + + +RK M+  
Sbjct: 532 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 591

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KKEPG S IEVNG +H+FL G+ SHP  + I   L E+  +L   GYVP+ S +L  +
Sbjct: 592 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI 651

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E AL  HSE+LA+A+GLIS  PS PIRIVKNLRVC DCH   KL+SK+Y R I+
Sbjct: 652 DEEE-KETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVII 710

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RDR RFHHFR G CSC DYW
Sbjct: 711 VRDRNRFHHFREGYCSCGDYW 731



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 224/471 (47%), Gaps = 48/471 (10%)

Query: 9   METLSTPVISLPR-HPNPTTLTVNNGHQHHPH-------------PVFSLIKQCKNIKQL 54
           ME ++  V + P+  P+   LT+    QHHPH             P          ++Q 
Sbjct: 1   MEMMTMMVSTKPQLTPSLLPLTIQQ-LQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQT 59

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           KQIH  +++T                      +L+     F     P+   WN +I +Y+
Sbjct: 60  KQIHAHIIKTHFHH------------------ALQIPLNDFPSGLSPS-AQWNFVITSYT 100

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
              +P  +  ++ QL     +  + F  P V+KA  ++   ++G+ IHG V+K   + D+
Sbjct: 101 KRNQPRNALNVYAQL-RKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDV 159

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ N+L+  Y  C  +  A  VF  + ++DVVSW++MI    +   F+ A+EL REM   
Sbjct: 160 FVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFM 219

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
            V+P EV MV++++  A   ++  G+    A+  +  ++ S N +    T  ++L   A+
Sbjct: 220 QVRPSEVAMVSMVNLFADTANMRMGK----AMHAY-VIRNSNNEHMGVPTTTALLDMYAK 274

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
            G + +  Q+   + ++ +       T++I    +   L++A  +F + ++RDV +W+ M
Sbjct: 275 CGHLGLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           ++ +A   C  +A +LF +M+ + V+P  VT  ++L  C+ +G +D G+   + ++    
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 390

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVE-FIEKMPIVPGASVWGALLGACKIH 464
            V  + + T +VDM  + G ++ A   FIE   I     +W A++    +H
Sbjct: 391 EVDCILN-TALVDMYAKCGDINAAGRLFIE--AISRDICMWNAIITGFAMH 438


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/616 (42%), Positives = 380/616 (61%), Gaps = 63/616 (10%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
              L+++C N+++L+QIH QML+TGL  D   ASKL   CA     SL YAR +FD+I +
Sbjct: 21  TLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQ 159
           PN + WNT+IR YS+S EP ++ +++  ++Y+S P+  N +TFPF++KA + +      Q
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH--NAYTFPFLLKACSSMSALEETQ 138

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  +IK  F  +++ +NSL++ Y+  GD+  A  +F  + ++D               
Sbjct: 139 QIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-------------- 184

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A+ L+  M+   +K D V +V+ L ACA    L+ G+W                  
Sbjct: 185 ---EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKW------------------ 223

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                   IHA +KK  I+++  L   LIDMY KCG+L++A+EV
Sbjct: 224 ------------------------IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 259

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ + V VW+ MI+G+A++G GREAL+ F +MQ A V+PN +TFT +L ACSH+GLV
Sbjct: 260 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLV 319

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            E ++ F  ME ++G  P ++HY CMVD+LGRAGLL EA E IE MP+ P A++WGALL 
Sbjct: 320 HEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLN 379

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC IH N+EL +     L++++P + G  + L++I+A  G+W+  + +R+ M+  G+ K 
Sbjct: 380 ACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKL 439

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PGCS I VNG  H+FLAG+ SHP  KEI   L++IV RL+  GY P     L L  E+  
Sbjct: 440 PGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLG-DLLLDLEDKE 498

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E A++ HSE+LA+ +GLIS +P   IRIVKNLRVC DCHTV KLISK+Y REIL+RDR 
Sbjct: 499 KETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRT 558

Query: 640 RFHHFRGGNCSCMDYW 655
           RFH F+ GNC+C DYW
Sbjct: 559 RFHLFKDGNCTCGDYW 574


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/633 (40%), Positives = 402/633 (63%), Gaps = 30/633 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF--SSLEYAREMFDQI 98
           +F  I  C+ I+ L QIH   +++G   D  +A+++   CA        L+YA ++F+Q+
Sbjct: 26  LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85

Query: 99  PQPNLYTWNTLIRAYSSSAE--PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           PQ N ++WNT+IR +S S E   + +  +F +++ +    PN FTFP V+KA A+  + +
Sbjct: 86  PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF----------VMIGKK--- 203
            G+ IHG+ +K  F  D F+ ++L+  Y +CG +  A  +F          VM  ++   
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205

Query: 204 -DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
            ++V WN MI G+++ G  + A  L+ +M   +V    V+   ++S  +         + 
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSV----VSWNTMISGYS------LNGFF 255

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            +A+ +F E++   ++ P+  T VSVL A ++LG++++G  +H   +  GI+++  L ++
Sbjct: 256 KDAVEVFREMK-KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LIDMY+KCG ++KA+ VF  +   +V  WS MI GFA++G   +A+D F +M++A V+P+
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            V + N+L ACSH GLV+EGR +F+QM  V G+ P ++HY CMVD+LGR+GLLDEA EFI
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
             MPI P   +W ALLGAC++  NVE+ +   + L+++ P + GA V LSN+YA  G W 
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            VSE+R  M+   ++K+PGCS I+++G +H+F+  + SHP  KEI S L EI  +L+  G
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y P  + +L  +EEED +E  L+ HSE++A A+GLIS  P +PIRIVKNLR+C DCH+  
Sbjct: 555 YRPITTQVLLNLEEED-KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KLISK+Y R+I +RDR RFHHF+ G+CSCMDYW
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/615 (41%), Positives = 387/615 (62%), Gaps = 45/615 (7%)

Query: 42  FSLIKQCKNIK-QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
            +L+  C + K + +QIH   +R G+        K      L   S + YA ++F QI  
Sbjct: 43  IALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQN 102

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN++TWNT+IR Y+ S  P+ +  ++ Q+ + S   P+  T+PF++KA A+L+  R G+ 
Sbjct: 103 PNIFTWNTMIRGYAESENPMPALELYRQM-HVSCIEPDTHTYPFLLKAIAKLMDVREGEK 161

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H + I++ FE  +F+ N+L+H YA CG    A+ +F ++ ++++V+WNS+I+G+   G 
Sbjct: 162 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG- 220

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
                                                    PNEAL++F E+ L + V P
Sbjct: 221 ----------------------------------------RPNEALTLFREMGL-RGVEP 239

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D FT VS+LSACA+LGA+ +G + H  M K G+  N +   +L+D+Y KCG++ +A +VF
Sbjct: 240 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 299

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             ++ + V  W+++I G A+ G G+EAL+LF  ++   + P+ +TF  VL ACSH G+VD
Sbjct: 300 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVD 359

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG  +F +M+  YG+VP ++HY CMVD+LGRAGL+ +A EFI+ MP+ P A VW  LLGA
Sbjct: 360 EGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGA 419

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C IH ++ L E A + LL+LEP++ G  VLLSN+YA   +W +V ++R+ M   G+KK P
Sbjct: 420 CTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTP 479

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G S +E+   +H+F+ G+ SHP  +EIY KL EI   LK  GYVP+ S++L  +EEE+ +
Sbjct: 480 GHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEE-K 538

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E AL+ HSE++AIA+ LI+     PIR+VKNLRVC DCH   KLISK+++REI++RDR R
Sbjct: 539 ETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 598

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF+ G+CSC DYW
Sbjct: 599 FHHFKDGHCSCKDYW 613


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/749 (39%), Positives = 421/749 (56%), Gaps = 103/749 (13%)

Query: 1   MTDNPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQ 60
           M    P  + + S P   LP   +P   ++ N      HP  SL+  CK ++ L+ IH Q
Sbjct: 2   MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRN------HPSLSLLHNCKTLQSLRIIHAQ 55

Query: 61  MLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
           M++ GL    Y+ SKL   C L   F  L YA  +F  I +PNL  WNT+ R ++ S++P
Sbjct: 56  MIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115

Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
           + +  +++ ++ +    PN +TFPFV+K+ A+   F+ GQ IHG V+K   + DL++  S
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174

Query: 180 LIHFYAICGDLAMAYCVFVM-------------------------------IGKKDVVSW 208
           LI  Y   G L  A+ VF                                 I  KDVVSW
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 234

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV------------------------ 244
           N+MISG+ + G +++A+EL+++M   NV+PDE TMV                        
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294

Query: 245 -----------AVLSACAKKRDLE-----FGRWP--------------------NEALSI 268
                      A++   +K  +LE     F R P                     EAL +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDM 326
           F E+ L     P++ T +S+L ACA LGA+DIG  IH  + K  +G+     L TSLIDM
Sbjct: 355 FQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG+++ A +VF+++  + +  W+ MI GFAM+G    + DLFSRM++  ++P+ +TF
Sbjct: 414 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITF 473

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +L ACSHSG++D GR  F  M   Y + P ++HY CM+D+LG +GL  EA E I  M 
Sbjct: 474 VGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMME 533

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           + P   +W +LL ACK+H NVEL E    +L+++EPEN G+ VLLSNIYA  G+W+ V++
Sbjct: 534 MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAK 593

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
            R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY  L+E+   L+  G+VP+
Sbjct: 594 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPD 653

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IVKNLRVC +CH   KLIS
Sbjct: 654 TSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 712

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 713 KIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/659 (42%), Positives = 407/659 (61%), Gaps = 36/659 (5%)

Query: 9   METLSTPVISLPRHP---NPT-TLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRT 64
           +  LS+ + S   H     PT TL++   H H+          C N+KQ  +I +QM+ T
Sbjct: 6   LNQLSSALKSTFNHKPTFKPTITLSILETHLHN----------CHNLKQFNRILSQMILT 55

Query: 65  GLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
           G   D ++AS+L        F  L+Y+ ++FD+I   N + WNT++RAY  S    ++ +
Sbjct: 56  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 115

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           ++  +V N+   P+ +T+P V++A A RL++F  G+ IH  V+K  F+ D+++ N+LI+ 
Sbjct: 116 LYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINM 173

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE---LYREMEMENVKPDE 240
           YA+CG++  A  +F      D VSWNS+++G+V+ G   + +E   L+ EM+    + D 
Sbjct: 174 YAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMD----EKDM 229

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
           V+  A++S   +    E      EAL +F E+  +  +  DE   VSVLSACA L  +  
Sbjct: 230 VSWSALISGYEQNGMYE------EALVMFIEMN-ANGMRLDEVVVVSVLSACAHLSIVKT 282

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLI----DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           G  IH  + + GI+    L  +LI    DMY KCG ++ ALEVF+ ++ + V  W+ +I 
Sbjct: 283 GKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALII 342

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           G A+ G    +LD+FS M+   V PN +TF  VL AC H GLVDEGR  F  M   +G+ 
Sbjct: 343 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 402

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P VKHY CMVD+LGRAGLL+EA + IE MP+ P  + WGALLGACK H + E+ E     
Sbjct: 403 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRK 462

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           L+EL+P++ G  VLLSNI+A  G W++V E+R  M+  G+ K PGCS IE NG +H+FLA
Sbjct: 463 LIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLA 522

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           G+ +HP   ++   L+E+  RLK  GY P+ + +   ++EE+ +E  L  HSE+LAIA+G
Sbjct: 523 GDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE-KETTLFRHSEKLAIAFG 581

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L+++ P  PIRI+KNLR+C DCHT AKLISK Y REI++RDR+RFH+F+ G CSCMDYW
Sbjct: 582 LLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/654 (40%), Positives = 402/654 (61%), Gaps = 35/654 (5%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIK---QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           N T    N      P P   L K    CK  + LKQ+H   ++TG   DP +A+++   C
Sbjct: 2   NSTIYNPNRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS-SSAEPIQS--FMIFLQLVYNSPYFP 137
           A  +   ++YAR +F Q+P+PN + WNT++R  + ++ E +QS   M+F  ++ +    P
Sbjct: 62  AFSS-RDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKP 120

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           N FTFP V+KA AR  + R G+ IHG+++K  F +D F+ ++L+  Y +C  +  AY +F
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 198 ------------VMIGKK----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
                       + + K+    +VV WN MI G V+ G  + A  L+ EM   +V    V
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSV----V 236

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           +   ++S  A+           EA+++F E+Q S N++P+  T VSVL A A++GA+++G
Sbjct: 237 SWNVMISGYAQNGHF------IEAINLFQEMQ-SSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
             IH    K  I+++  L ++L+DMY+KCG++D+AL+VF T+  R+   WS +I  FAM+
Sbjct: 290 KWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMH 349

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G   +A+  F  M +A V PN V +  +L ACSH+GLV+EGR FF+ M  V G+ P ++H
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y CMVD+LGRAG L+EA E I  MPI P   +W ALLGACK+H+N+++ E     L+EL 
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P + G+ V LSN+YA  G W+ V+ +R  M+   ++K+PGCS IE++G IH+FL  + SH
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
              KEI + L E+  +L+S GY PN   +    +E++ + +AL  HSE++A+A+GLIS  
Sbjct: 530 SKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQE-RARALQYHSEKIAVAFGLISTA 588

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           P  P++IVKNLR+C DCH   KLIS +Y R+I++RDR RFH F  G+CSCMDYW
Sbjct: 589 PQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/654 (40%), Positives = 402/654 (61%), Gaps = 35/654 (5%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIK---QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           N T    N      P P   L K    CK  + LKQ+H   ++TG   DP +A+++   C
Sbjct: 2   NSTIYNPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS-SSAEPIQS--FMIFLQLVYNSPYFP 137
           A  +   ++YAR +F Q+P+PN + WNT++R  + ++ E +QS   M+F  ++ +    P
Sbjct: 62  AFSS-RDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKP 120

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           N FTFP V+KA AR  + R G+ IHG+++K  F +D F+ ++L+  Y +C  +  AY +F
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 198 ------------VMIGKK----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
                       + + K+    +VV WN MI G V+ G  + A  L+ EM   +V    V
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSV----V 236

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           +   ++S  A+           EA+++F E+Q S N++P+  T VSVL A A++GA+++G
Sbjct: 237 SWNVMISGYAQNGHF------IEAINLFQEMQ-SSNIDPNYVTLVSVLPAIARIGALELG 289

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
             IH    K  ++++  L ++L+DMY+KCG++DKAL+VF T+  R+   WS +I  FAM+
Sbjct: 290 KWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMH 349

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G   +A+  F  M +A V PN V +  +L ACSH+GLV+EGR FF+ M  V G+ P ++H
Sbjct: 350 GRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEH 409

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y CMVD+LGRAG L+EA E I  MPI P   +W ALLGACK+H+N+++ E     L+EL 
Sbjct: 410 YGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELA 469

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P + G+ V LSN+YA  G W+ V+ +R  M+   ++K+PGCS IE++G IH+FL  + SH
Sbjct: 470 PHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSH 529

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
              KEI + L E+  +L+S GY PN   +    +E++ + +AL  HSE++A+A+GLIS  
Sbjct: 530 SKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQE-RARALQYHSEKIAVAFGLISTA 588

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           P  P++IVKNLR+C DCH   KLIS +Y R+I++RDR RFH F  G+CSCMDYW
Sbjct: 589 PQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/609 (43%), Positives = 384/609 (63%), Gaps = 23/609 (3%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE----YAREMFDQIPQPNLYTW 106
           +K  +++H  +++ G       +S +F   AL    SL      AR +FD+  + ++ TW
Sbjct: 135 VKCGRELHDHIVKLGF------SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N +I  Y+ S +  +S  +F ++       P+  T   V+ A ++L    VG+ +H  V 
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEM-ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK 247

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
               E    + N+LI  YA CGD+  A  +F  +  +DV+SW ++++GF   G    A  
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + +M     + D V+  A++        L+  R+  E LS+F E+Q + N+ PDEFT V
Sbjct: 308 YFDKMP----ERDFVSWTAMIDGY-----LQVNRF-KEVLSLFREMQ-AANIKPDEFTMV 356

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           S+L+ACA LGA+++G  I A + K  IK++ ++  +LIDMY  CGN++KA+ +F+ +  R
Sbjct: 357 SILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR 416

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D   W+ +I G A+ G G EALD+FS+M +A + P+ VT   VLCAC+HSG+VD+G+ FF
Sbjct: 417 DKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFF 476

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
            +M   +G+ P V HY CMVD+LGRAG L EA E I+ MP+ P + VWG+LLGAC++H +
Sbjct: 477 ARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRD 536

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
            E+AE A   +LELEPEN    VLL NIYA   +W+ + E+RK M   G+KK PGCS IE
Sbjct: 537 EEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIE 596

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           +NG +H+F+AG+  HP  KEIYSKLDE+   LK  GY P+ S +   + EE+ +E A+  
Sbjct: 597 MNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEE-KESAVYR 655

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+GLIS  P   IRIVKNLR+C DCH VAKL+SK+YNRE+++RDR RFHHFR 
Sbjct: 656 HSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRH 715

Query: 647 GNCSCMDYW 655
           G+CSC DYW
Sbjct: 716 GSCSCKDYW 724



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 222/439 (50%), Gaps = 33/439 (7%)

Query: 11  TLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           TLS P   LP  P                P  SLIK CK++ QLKQIH+Q + TGL  +P
Sbjct: 6   TLSPPPTHLPSLPQT--------------PPLSLIKTCKSMAQLKQIHSQTICTGLISNP 51

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
              +++   C       +EYAR +FD +P PN + WN +I+ YS    P  +  ++ +++
Sbjct: 52  IVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEML 111

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
                 P+E+T+PF++K   R    + G+ +H  ++K  F  ++F+ N+LIH Y++ G++
Sbjct: 112 ERG-VMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEV 170

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           ++A  VF    K DVV+WN MISG+ +   F+++++L+ EME   V P  +T+V+VLSAC
Sbjct: 171 SVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSAC 230

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +K +DL  G+         H       + P      +++   A  G MD  + I   MK 
Sbjct: 231 SKLKDLNVGKR-------VHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKS 283

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
           + +       T+++  +T  G +  A   F  +  RD   W+ MI G+      +E L L
Sbjct: 284 RDV----ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSL 339

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG---RMFFNQMEPVYGVVPGVKHYTCMVD 427
           F  MQ A +KP+  T  ++L AC+H G ++ G   + + ++ E       G      ++D
Sbjct: 340 FREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG----NALID 395

Query: 428 MLGRAGLLDEAVEFIEKMP 446
           M    G +++A+     MP
Sbjct: 396 MYFNCGNVEKAIRIFNAMP 414


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/646 (40%), Positives = 398/646 (61%), Gaps = 21/646 (3%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSL-IKQCKNIK---QLKQIHTQMLRTGLFFDPY 71
           + +L   P P +   N  H   P    +L I   +N     +L+Q+H Q+++T       
Sbjct: 2   LFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSIL 61

Query: 72  SASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
             +++   CA     S  YA+++F  + +  P  + WN+ ++A +    PI + M+F +L
Sbjct: 62  PLTRVGLVCAFT--PSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRL 119

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
                  P+ FT   V++A   L+    G+ +HG+V K  F  +L++ N ++H YA CG+
Sbjct: 120 -RQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGE 178

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  +F  + ++DVV+WN MI+  ++ G  E A +L+  M   NV+    +M+A    
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR-SWTSMIAGYVQ 237

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C K +         EA+ +F +++    V  +E T V+VL+ACA LGA+D+G++IH    
Sbjct: 238 CGKAK---------EAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSN 287

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           + G K N  ++ +LIDMY KCG L++A +VF  ++ R V  WS MI G AM+G   EAL 
Sbjct: 288 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 347

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LFS M +  ++PN VTF  +L ACSH GL+ EGR FF  M   YG++P ++HY CMVD+L
Sbjct: 348 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLL 407

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
            RAGLL EA EFI  MP+ P   VWGALLGAC++H+NVE+AE A  HLLEL+P N G  V
Sbjct: 408 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 467

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           +LSNIYA+ G+W++ + +RK M+   +KK PG SSI V+G +H+F+AGE SHP  ++I+ 
Sbjct: 468 VLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQ 527

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
           + +E++  ++  GYVPN S +L  +EE + + + ++ HSE+LA+ +GL++     PIRI+
Sbjct: 528 RWEELLEEMRLKGYVPNTSVVLLDIEEGE-KVKFVSRHSEKLALVFGLMNTPAETPIRIM 586

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLR+C DCH+  KLIS + NREI++RDR RFH F   +CSC DYW
Sbjct: 587 KNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 384/619 (62%), Gaps = 15/619 (2%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           H  P   L+    +  +LKQ+H  +L+T         S++ + CA    SS  YA+ +F 
Sbjct: 14  HHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFN--SSFSYAKLIFQ 71

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +    +  WNT +R+++    P  +  +F +L       P+ +T  FV+KA +RL+  R
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRL-REFDISPDHYTCSFVLKACSRLLDVR 130

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG V K   + ++F+ N ++H YA+CG++ +A  VF  + ++DV++WN MI+  V
Sbjct: 131 NGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLV 190

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  E A +L+ EM   NV+    +M+   + C K +         EA+ +F E++   
Sbjct: 191 KMGDAEGAYKLFAEMPERNVR-SWTSMIGGYAQCGKSK---------EAIDLFLEME-DA 239

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P+E T V+VL ACA +G + +G +IH    + G + N  +  +LIDMY KCG L+ A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  ++ R V  WS MIAG A +G   +AL LF++M    VKPNAVTF  +L ACSH 
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           G+V++GR +F  M   YG+VP ++HY CMVD+  RAGLL EA EFI  MPI P   VWGA
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLG CK+H+N++LAE A  HL +L+P N G  V+LSNIYA+ G+W++V+ +RK MR  G+
Sbjct: 420 LLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGV 479

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG SSI V G ++ F+AG+ +HP  +EI+   ++++ R+K  GYVPN S +L L  E
Sbjct: 480 KKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVL-LDME 538

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E+ L  HSE+LA+ +GLI   P   IRI+KNLRVC DCH   K+IS +  REI++R
Sbjct: 539 EDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVR 598

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFH F+ G+CSC DYW
Sbjct: 599 DRNRFHCFKNGSCSCGDYW 617


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/615 (42%), Positives = 383/615 (62%), Gaps = 15/615 (2%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+  CK+ +Q+KQ+H +++ TGL   P   +KL    +   F+ + YA  +FD  PQP+L
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDL 65

Query: 104 YTWNTLIRAYS-SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           + +NT+I+  + S+     SF  F  L+      PN+++F F  K     V    G+ + 
Sbjct: 66  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              IK   E++LF++N+LI  Y     +  A  VF     +D+ SWN M+SG+ + G  +
Sbjct: 126 VHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMD 185

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           +A +L+ EM  ++V    V+   ++S C     L+ G +  EAL IFH + L+K ++P+E
Sbjct: 186 EARQLFDEMPEKDV----VSWTTMISGC-----LQVGYFM-EALDIFHNM-LAKGMSPNE 234

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           +T  S L+ACA L A+D G  +H  +KK  I++N  L   LIDMY KCG L+ A ++F++
Sbjct: 235 YTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNS 294

Query: 343 VK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
                R V+ W+ MI GFA++G  +EA+++F +M+  KV PN VTF  +L ACSH   V+
Sbjct: 295 NPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVE 354

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EGR +F  M   Y V P ++HY C+VD+LGRAG L EA E I  M + P  ++WGALL A
Sbjct: 355 EGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSA 414

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CKIH++ E+ E     + EL+P + G  VLL+NIY+ TG W+    LR+ +  SG KK P
Sbjct: 415 CKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTP 474

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCSSIE+NG  H+FL G+ SHP  K++Y  LDE++ +LK  GY+P    +L  +++ + +
Sbjct: 475 GCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDR 534

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E AL  HSE+LAIA+GL++  P  PIRIVKNLRVC DCH   K ISK+Y+REI++RDR R
Sbjct: 535 ETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIR 594

Query: 641 FHHFRGGNCSCMDYW 655
           +HHF+ G CSC DYW
Sbjct: 595 YHHFKDGTCSCNDYW 609


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/742 (39%), Positives = 406/742 (54%), Gaps = 108/742 (14%)

Query: 12  LSTPVIS-LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           LS P +  LP    P  L  N       HP  +L+ +C +I  LKQIH+ ++++GL    
Sbjct: 5   LSPPFVHFLPSSDPPYKLLEN-------HPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTL 57

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           ++ SKL   CAL     L YA  +F  I    PN++ WNTLIRA+S +  P  S  +F Q
Sbjct: 58  FAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQ 117

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           ++++  Y PN  TFP + K+ A+       + +H   +K +      +  SLIH Y+  G
Sbjct: 118 MLHSGLY-PNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVG 176

Query: 189 DLAMAYCVFVM-------------------------------IGKKDVVSWNSMISGFVQ 217
           +L  A  VF                                 I  KDVVSWN+MI+G+VQ
Sbjct: 177 ELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQ 236

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-------------KRDLEFGR---- 260
            G FE+A+  +  M+  +V P++ TMV+VLSAC                RD  FG+    
Sbjct: 237 SGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQL 296

Query: 261 -------------------------------WPN------------EALSIFHELQLSKN 277
                                          W              EAL +F E+ L +N
Sbjct: 297 VNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLF-EVMLREN 355

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHA----KMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           V P++ TF++VL ACA LGA+D+G  +HA     +K  G   N  L TS+I MY KCG +
Sbjct: 356 VTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCV 415

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           + A +VF ++ SR +  W+ MI+G AM G    AL LF  M     +P+ +TF  VL AC
Sbjct: 416 EVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSAC 475

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           + +G V+ G  +F+ M   YG+ P ++HY CM+D+L R+G  DEA   +  M + P  ++
Sbjct: 476 TQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAI 535

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           WG+LL AC+IH  VE  EY    L ELEPEN GA VLLSNIYA  G+WD+V+++R  +  
Sbjct: 536 WGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLND 595

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            G+KK PGC+SIE++G +H+FL G+  HP  + I+  LDE+   L+  G+VP+ S +L  
Sbjct: 596 KGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYD 655

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           ++EE  +E AL  HSE+LAIA+GLIS +P   IRIVKNLRVC +CH+  KLISK++NREI
Sbjct: 656 MDEE-WKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREI 714

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           + RDR RFHHF+ G CSC D W
Sbjct: 715 IARDRNRFHHFKDGFCSCNDRW 736


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/650 (41%), Positives = 410/650 (63%), Gaps = 29/650 (4%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           NPT    + G       +F  I  C+ I+ L QIH   +++G   D  +A+++   CA  
Sbjct: 2   NPTQTLYSPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATS 61

Query: 84  TF--SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE--PIQSFMIFLQLVYNSPYFPNE 139
                 L+YA ++F+Q+PQ N ++WNT+IR +S S E   + +  +F +++ +    PN 
Sbjct: 62  DLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNR 121

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-- 197
           FTFP V+KA A+  + + G+ IHG+ +K  F  D F+ ++L+  Y ICG +  A  +F  
Sbjct: 122 FTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYK 181

Query: 198 --------VMIGKK----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
                   +MI ++    +VV WN MI G+++ G  + A  L+ +M   +V     TM++
Sbjct: 182 NIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN-TMIS 240

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
             S     +D         A+ +F E++  +++ P+  T VSVL A ++LG++++G  +H
Sbjct: 241 GYSQNGFFKD---------AVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLH 291

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
              +  GI+++  L ++LIDMY+KCG ++KA+ VF  +   +V  WS MI GFA++G   
Sbjct: 292 LYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAG 351

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           +A+D F +M++A V+P+ V + N+L ACSH+GLV+EGR +F+QM  V G+ P ++HY CM
Sbjct: 352 DAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 411

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
           VD+LGR GLLDEA EFI  MPI P   +W ALLGAC++H NVE+ +   + L+++ P + 
Sbjct: 412 VDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDS 471

Query: 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCK 545
           GA V LSN+YA  G W  VSE+R  M+   ++K+PGCS I+++G +H+FL  + SHP  K
Sbjct: 472 GAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAK 531

Query: 546 EIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP 605
           EI S L EI  +L+  GY P  + +L  +EEED +E AL+ HSE++A A+GLIS  P +P
Sbjct: 532 EINSMLVEISDKLRLAGYRPITTQVLLNLEEED-KENALHYHSEKMATAFGLISTSPGKP 590

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IRIVKNLR+C DCH+  KLISK+Y R+I +RDR RFHHF+ G+CSCMDYW
Sbjct: 591 IRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/620 (41%), Positives = 385/620 (62%), Gaps = 44/620 (7%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAREMF 95
           +P  + S + +C ++K+LKQI    ++T L  D    +KL   C    T +S++YA ++F
Sbjct: 25  YPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLF 84

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           + IPQP++  +N++ R YS S  P+++  +F++ + N    P+++TFP ++KA      F
Sbjct: 85  EAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKAL-NYNLLPDDYTFPSLLKACVVAKAF 143

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           + G+ +H + IK    ++ ++  +LI+ YA C D+  A  VF  I +  VVS+N++I+G+
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGY 203

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +                                            PNEALS+F +LQ +
Sbjct: 204 ARSS-----------------------------------------RPNEALSLFRQLQ-A 221

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P++ T +SVLS+CA LGA+D+G  IH  +KK G+     + T+LIDMY KCG+LD 
Sbjct: 222 RKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDG 281

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A+ VF ++  RD   WS MI  +AM+G G++ + +F  M  AKV+P+ +TF  +L ACSH
Sbjct: 282 AISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSH 341

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLVDEG  +F  M  VYG++PG+KHY CMVD+LGRAGLL EA +FI+++PI P   +W 
Sbjct: 342 TGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWR 401

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL +C  H N+ELA+   + +LEL+  + G  V+LSN+ A+ GKW++V  LRK M   G
Sbjct: 402 TLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKG 461

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
             K PGCSSIEV+  +H+F +G+  H +   ++  LDE+V  LKS GYVP+ S ++    
Sbjct: 462 AVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDM 521

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E++ +E  L  HSE+LAI++GL++  P   IR+VKNLRVCGDCH+ AKLIS L +REI+L
Sbjct: 522 EDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIIL 581

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC DYW
Sbjct: 582 RDVQRFHHFKDGKCSCGDYW 601


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/656 (41%), Positives = 387/656 (58%), Gaps = 71/656 (10%)

Query: 63  RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
           R GL  D Y  + +   C+   FS   Y R +F QI QPN++ WNT+IR   S+ +    
Sbjct: 39  RFGLCHDNYLLNMILR-CSF-DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSN-DCFDD 95

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
            + F  L+ +  + PN FTFPFV+KA ARL+  ++G  IH +V+K  F+ D+F+  SL+ 
Sbjct: 96  AIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVC 155

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA CG L  A+ VF  I  K+VVSW ++ISG++  G F +AI+++R +   N+ PD  T
Sbjct: 156 LYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFT 215

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL------- 295
           +V VLSAC +  DL  G W ++ +    E+ + +NV     + V + + C  +       
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCI---MEMGMVRNVFVGT-SLVDMYAKCGNMEKARSVF 271

Query: 296 -----------GAMDIG----------VQIHAKMKKQGIKLNCY---------------- 318
                      GAM  G          + +  +M+++ +K +CY                
Sbjct: 272 DGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALE 331

Query: 319 -------------------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
                              L T+LID+Y KCG++ +A EVF  +K +D  VW+ +I+G A
Sbjct: 332 LGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLA 391

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           M G  + +  LF ++++  +KP+  TF  +LC C+H+GLVDEGR +FN M   + + P +
Sbjct: 392 MNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSI 451

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY CMVD+LGRAGLLDEA + I  MP+   A VWGALLGAC+IH + +LAE A   L+E
Sbjct: 452 EHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIE 511

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           LEP N G  VLLSNIY+   KWD  +++R  M    ++K PGCS IEV+G +H+FL G+ 
Sbjct: 512 LEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDK 571

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
            HPL ++IY+KLDE+  ++K  GYVP    +L  +EEE+ +E  L  HSE+LAIA+GLIS
Sbjct: 572 YHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEE-KEHFLGCHSEKLAIAFGLIS 630

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             P+  IR+VKNLRVCGDCH   KLIS +  REI +RD  RFH FR G+CSC DYW
Sbjct: 631 ATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/633 (41%), Positives = 393/633 (62%), Gaps = 25/633 (3%)

Query: 35  QHHPHPV-FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           Q+ PH +  SL + C   ++++Q+H   L+T +F  P+ +S+L    +    + L YAR 
Sbjct: 12  QYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARS 71

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +FD+I + +L  WNT+I+ Y  +       ++F +LV+   Y P+ FT P VIK  ARL 
Sbjct: 72  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLG 129

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV------- 206
             + G+ IHG+ +K  F  D+F+  SL++ Y+ CG++  A  VF  +  KDVV       
Sbjct: 130 VVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLID 189

Query: 207 ----SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
               SWN+MI+G+++ G F+ A+EL+ +M +     D VT   +++        E     
Sbjct: 190 GNLVSWNAMINGYMKSGDFDSALELFYQMPIW----DLVTWNLMIAG------YELNGQF 239

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            +A+ +F  + L     P   T VSVLSA + L  +  G  IH+ M+K G +L+  L TS
Sbjct: 240 MDAVKMFF-MMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTS 298

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LI+MY KCG ++ AL VF  ++ + V  W+ +I G  ++G    AL LF  M +  +KPN
Sbjct: 299 LIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPN 358

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
           A+ F  VL AC+H+GLVD+GR +F+ M   Y + P ++HY C+VD+L RAG L+EA   I
Sbjct: 359 AIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTI 418

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           E MPI P   +W +LLG  + H  +++ EYA   ++E+ PE  G  +LLSN+YA +G W+
Sbjct: 419 ENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWE 478

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            VS +R+ M   G +K+PGCSS+E  G +H+F+ G+ SHP  KEIY+K+ E+  +LK  G
Sbjct: 479 KVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVG 538

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           +VP+ + +L  +E E  +E  L  HSERLAIA+GLI+V+P  PIRI+KNLRVC DCH+V 
Sbjct: 539 HVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVT 598

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KL+SK+Y+REI++RD  RFHHF+ G+CSCMDYW
Sbjct: 599 KLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/627 (42%), Positives = 384/627 (61%), Gaps = 21/627 (3%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           H  H   + SLI  CK+++Q+KQ H Q++ T L   P SA+KL     L   +SL YA +
Sbjct: 12  HSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLK---LAACASLSYAHK 68

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           +FDQIPQP+L+ +NT+I+A+S S      S ++F  L  +   FPN ++F F   A    
Sbjct: 69  LFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNG 128

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
           +  + G+ +    +K   E+++F+ N+LI  Y   G +  +  VF     +D+ SWN++I
Sbjct: 129 LGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLI 188

Query: 213 SGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           + +V  G    A EL+  M E + V    +    V   C             EAL  FH+
Sbjct: 189 AAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFM-----------EALDFFHK 237

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           + L     P+E+T VS L+AC+ L A+D G  IHA + K  IK+N  L  S+IDMY KCG
Sbjct: 238 M-LQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCG 296

Query: 332 NLDKALEVF--HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            ++ A  VF  H VK + V++W+ MI GFAM+G   EA+++F +M+  K+ PN VTF  +
Sbjct: 297 EIESASRVFFEHKVKQK-VWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIAL 355

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSH  +V+EG+++F  M   Y + P ++HY CMVD+L R+GLL EA + I  MP+ P
Sbjct: 356 LNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAP 415

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
             ++WGALL AC+I++++E        +  ++P + G  VLLSNIY+ +G+W+    LR+
Sbjct: 416 DVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILRE 475

Query: 510 HMRVS-GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
              +S   KK PGCSSIE+ G  H+FL G+ SHP  +EIYS LDE+  +LKS GYVP   
Sbjct: 476 KNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELG 535

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            LL  +++E+ +E AL++HSE+LAIA+GL++     PIRIVKNLRVCGDCH   K ISK+
Sbjct: 536 ELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKV 595

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           YNR I++RDR R+HHF  G CSC DYW
Sbjct: 596 YNRVIIVRDRTRYHHFEDGICSCKDYW 622


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/634 (40%), Positives = 389/634 (61%), Gaps = 45/634 (7%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           P  T +   N + +  HP+ SL+ +C ++++LKQ+    ++T L  D    +K    C+L
Sbjct: 6   PPVTPMCPPNSNSNTTHPL-SLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSL 64

Query: 83  G-TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
             T +S+++A  +FDQIPQP++  +NT+ R Y+ +  P+++F +F Q+++ S  FP+++T
Sbjct: 65  NPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILF-SGLFPDDYT 123

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           FP ++KA A       G+ +H + IK    +++++  +LI+ Y  C ++  A  VF  I 
Sbjct: 124 FPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIW 183

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           +  VV++N+MI+G+ +G                                           
Sbjct: 184 EPCVVTYNAMITGYARGS-----------------------------------------R 202

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           PNEALS+F ELQ ++N+ P + T +SVLS+CA LGA+D+G  +H  +KK G      + T
Sbjct: 203 PNEALSLFRELQ-ARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDT 261

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LIDMY KCG+LD A+ VF  +  RD   WS MI  +A++G G +A+ LF  M++A  +P
Sbjct: 262 ALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEP 321

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + +TF  +L ACSH+GLV+EG  +F  M   YGV+PG+KHY CMVD+LGRAG L+EA EF
Sbjct: 322 DEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEF 381

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I  +PI P   +W  LL AC  H NVEL +     + EL+  + G  ++LSN+ A+ G+W
Sbjct: 382 IVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRW 441

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++V+ +RK M   G+ K PGCSS+EVN  +H+F +G+  H +  +++  LDE+V  LK  
Sbjct: 442 EDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLV 501

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVPN S +     E++ +E  L  HSE+LAI +GL++  P   IR+VKNLRVCGDCH+ 
Sbjct: 502 GYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSA 561

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AKLIS +++R+I+LRD  RFHHF+ G CSC DYW
Sbjct: 562 AKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/680 (41%), Positives = 395/680 (58%), Gaps = 41/680 (6%)

Query: 9   METLSTPVISLPRHPN---PTTLTVNNGHQHHPHPVFSLIKQCK-NIKQLKQIHTQMLRT 64
           M + +T     P H +   P   +       H   +  L  QC  ++  LKQ H  +LRT
Sbjct: 1   MSSTATTATEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRT 60

Query: 65  GLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           G   D Y A  L   +   +   + S E +  +FD + +PN++ WN +I+    + EP +
Sbjct: 61  GHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFK 120

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           + +++ +++  + + PN++T+P V+KA +       G  +H  ++K     D  I +S I
Sbjct: 121 AILLYYEMMV-AHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAI 179

Query: 182 HFYAICGDLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
             YA  G L  A  +    G + D V WN+MI G+++ G  E A EL+  M   ++    
Sbjct: 180 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTW 239

Query: 241 VTMVAVLSACA------------KKRDLEFGRWPN------------EALSIFHELQLSK 276
             M++  S C             K+RD E   W              EAL IFH++Q  K
Sbjct: 240 NAMISGFSRCGMVEVAREFFDEMKERD-EIS-WSAMIDGYIQEGCFMEALEIFHQMQKEK 297

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P +F   SVLSACA LGA+D G  IH   K+  I+L+  L TSL+DMY KCG +D A
Sbjct: 298 -IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLA 356

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            EVF  + +++V  W+ MI G AM+G   +A+DLFS+M    + PN +TF  VL AC+H 
Sbjct: 357 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHG 413

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV +G   FN M   YGV P ++HY C+VD+LGRAGLL EA + +  +P  P  +VWGA
Sbjct: 414 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 473

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGAC+ H NVEL E     LLELEP+N G   LLSNIYAK G+W+ V E+RK M+  G+
Sbjct: 474 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 533

Query: 517 KKEPGCSSIEVN-GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           K  PG S I++  GE+HKF+ G+ SHP  K+IY  LD++  RL+  GY P+ S +L  ++
Sbjct: 534 KTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDID 593

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE+ +E A+  HSE+LAI +GLI+  P   IRIVKNLRVC DCH+  KLIS++YNREI++
Sbjct: 594 EEE-KETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIV 652

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RDR R+HHFR G CSC D+W
Sbjct: 653 RDRIRYHHFRNGACSCKDFW 672


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/673 (40%), Positives = 391/673 (58%), Gaps = 66/673 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+    + + L QIH Q++ +GL    +  +K     A      + YAR++FD+ P+P+
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVN--ASWNIGEIGYARKVFDEFPEPS 133

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ WN +IR YSS      +  ++ ++   S   P+ FT P V+KA + +    VG+ +H
Sbjct: 134 VFLWNAIIRGYSSHNFFGDAIEMYSRM-QASGVNPDGFTLPCVLKACSGVPVLEVGKRVH 192

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           G + +  FE D+F+ N L+  YA CG +  A  VF  +  +++VSW SMISG+ Q G   
Sbjct: 193 GQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPM 252

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSA---------------CAKKRDLEF--------- 258
           +A+ ++ +M   NVKPD + +V+VL A               C  K  LEF         
Sbjct: 253 EALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLT 312

Query: 259 ------------------------------------GRWPNEALSIFHELQLSKNVNPDE 282
                                                 + NEA+ +F E+ +SKN+  D 
Sbjct: 313 AMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEM-ISKNIRTDS 371

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T  S + ACAQ+G++D+   +   + K   + + ++ T+LIDM+ KCG++D A EVF  
Sbjct: 372 ITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              +DV VWS MI G+ ++G G++A+DLF  M++A V PN VTF  +L AC+HSGLV+EG
Sbjct: 432 TLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              F+ M+  YG+    +HY C+VD+LGR+G L+EA +FI  MPI PG SVWGALLGACK
Sbjct: 492 WELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACK 550

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           I+ +V L EYA   L  L+P N G  V LSN+YA +  WD+V+++R  MR  GL K+ G 
Sbjct: 551 IYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGY 610

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IE+NG++  F  G+ SHP  KEI+ +L+ +  RLK  G++P+   +L  + +E+ +E 
Sbjct: 611 SLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEET 670

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
             N HSERLAIAYGLIS  P   +RI KNLR C +CH+  KLISKL NREI++RD  RFH
Sbjct: 671 LCN-HSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFH 729

Query: 643 HFRGGNCSCMDYW 655
           HF+ G CSC DYW
Sbjct: 730 HFKNGVCSCRDYW 742


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/621 (41%), Positives = 387/621 (62%), Gaps = 14/621 (2%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
            H    L +   ++K LK +H  +LR GL  D Y  +K+        F +  Y+  +F Q
Sbjct: 10  AHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSF--NFGNTNYSHRIFHQ 67

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             +PN++ +NT+I     +    +S  I+  +       P+ FTFPF++KA ARL+  ++
Sbjct: 68  TKEPNIFLFNTMIHGLVLNDSFQESIEIYHSM-RKEGLSPDSFTFPFLLKACARLLDSKL 126

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +HG+V+K+  E D F++ SL+  Y  CG +  A+ VF  I +K+V +W ++ISG++ 
Sbjct: 127 GIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIG 186

Query: 218 GGFFEKAIELYRE---MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
            G   +AI+++R    +    ++ D V+  +++   A          P EAL +F ++ L
Sbjct: 187 VGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNG------LPKEALDLFFKM-L 239

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           ++   PD +  V VL ACA+LGA+++G      M +     N  L T+LIDMY KCG +D
Sbjct: 240 NEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMD 299

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A EVF  ++ +D+ VW+  I+G AM G  + A  LF +M+++ ++P+  TF  +LCAC+
Sbjct: 300 SAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACT 359

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GLVDEGR +FN ME V+ + P ++HY CMVD+LGRAG LDEA + ++ MP+   A VW
Sbjct: 360 HAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVW 419

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GALLG C++H + +L E     L+ LEP N G  VLLSNIY+ + KW++ +++R  M   
Sbjct: 420 GALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSER 479

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KK PG S IEV+G +H+FL G++SHPL ++IY+KL E+V  LK+ GYVP   ++L  +
Sbjct: 480 GIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDI 539

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EEE+ +E  +  HSE+LAIA+GLIS  P+  IR+VKNLRVCGDCH   K IS+   REI+
Sbjct: 540 EEEE-KEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREII 598

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFH F  G+CSC DYW
Sbjct: 599 VRDNNRFHCFNDGSCSCKDYW 619


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/649 (40%), Positives = 385/649 (59%), Gaps = 76/649 (11%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  +LI     +K+LKQIHTQ++  GL  +     +     A+   ++L Y+ ++ DQ 
Sbjct: 10  HPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQC 69

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRV 157
            +P L+  N++IRAYS S  P +SF  + +++  N    P+ +TF F+++  A+      
Sbjct: 70  AKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSA-CEA 128

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFY-------------------------------AI 186
           G A+HG +IK  FE D  + + LI  Y                               A 
Sbjct: 129 GPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAK 188

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CGD+  A  +F  + ++D VSWN+MI+G+ Q G   +A+ L++ M+M+ VK +EV+M++V
Sbjct: 189 CGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISV 248

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           ++AC     L+ G+W                                           HA
Sbjct: 249 VTACTHLGALDQGKWA------------------------------------------HA 266

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            ++K  I++   L T+L+DMY KCGN+D+AL+VF  +  ++V+ WST I G AM G G++
Sbjct: 267 YIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQK 326

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
            L+LFS M+   + PN +TF +VL  CS  G VDEGR  F+ M+  +G+ P ++HY CMV
Sbjct: 327 CLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMV 386

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+ GRAG L+EA+ FI  MP+ P A  WGALL AC++++N+EL E+A   L+E+E +NHG
Sbjct: 387 DLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHG 446

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
           A V LSNIYA TG WD VS +R+ M+  G+ K PGCS +EVNGE+H+F +G+ SHP    
Sbjct: 447 AYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDV 506

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           I +   EI  RLK  GYV + + +L  +EEE+ +E AL  HSE++AIA+GL S++   PI
Sbjct: 507 IETMWGEISKRLKLAGYVASTNSVLFDIEEEE-KEDALCKHSEKMAIAFGLFSLKEGLPI 565

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           RIVKNLR+C DCH V+K+ISK++ REI++RDR RFHHF+ G CSC D+W
Sbjct: 566 RIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/681 (41%), Positives = 393/681 (57%), Gaps = 42/681 (6%)

Query: 9   METLSTPVISLPRHPN----PTTLTVNNGHQHHPHPVFSLIKQCK-NIKQLKQIHTQMLR 63
           M + +T     P H +    P   +       H   +  L  QC  ++  LKQ H  +LR
Sbjct: 1   MSSTATTATEAPYHHHHHLIPKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILR 60

Query: 64  TGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           TG   D Y A  L   +   +   + S E +  +FD + +PN++ WN +I+    + EP 
Sbjct: 61  TGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPF 120

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++ +++ ++V      PN++T+P V+KA +       G  +H  ++K     D  I +S 
Sbjct: 121 KAILLYYEMVVAHSR-PNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSA 179

Query: 181 IHFYAICGDLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           I  YA  G L  A  +    G + D V WN+MI G+++ G  E A EL+  M   ++   
Sbjct: 180 IRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIST 239

Query: 240 EVTMVAVLSACA------------KKRDLEFGRWPN------------EALSIFHELQLS 275
              M++  S C             K+RD E   W              EAL IFH++Q  
Sbjct: 240 WNAMISGFSRCGMVEVAREFFDEMKERD-EIS-WSAMIDGYIQEGCFMEALEIFHQMQKE 297

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           K + P +F   SVLSACA LGA+D G  IH   K+  I+L+  L TSL+DMY KCG +D 
Sbjct: 298 K-IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 356

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A EVF  + +++V  W+ MI G AM+G   +A+DLFS+M    + PN +TF  VL AC+H
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAH 413

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV +G   FN M   YGV P ++HY C+VD+LGRAGLL EA + +  +P  P  +VWG
Sbjct: 414 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 473

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALLGAC+ H NVEL E     LLELEP+N G   LLSNIYAK G+W+ V E+RK M+  G
Sbjct: 474 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 533

Query: 516 LKKEPGCSSIEVN-GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           +K  PG S I++  GE+HKF+ G+ SHP  K+IY  LD++  RL+  GY P+ S +L  +
Sbjct: 534 IKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDI 593

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E A+  HSE+LAI +GLI+  P   IRIVKNLRVC DCH+  KLIS++YNREI+
Sbjct: 594 DEEE-KETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREII 652

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RDR R+HHFR G CSC D+W
Sbjct: 653 VRDRIRYHHFRNGACSCKDFW 673


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/623 (42%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSS----LEYARE 93
           HP  +L++ C +   LK IH  +LRT L  D + AS+L   C    TF+     L YA  
Sbjct: 13  HPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +F QI  PNL+ +N LIR +S+ AEP ++F  + Q++  S  +P+  TFPF+IKA++ + 
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEME 131

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
              VG+  H  +++  F++D+++ NSL+H YA CG +A A  +F  +G +DVVSW SM++
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ + G  E A E++ EM   N+     T   +++  AK    E      +A+ +F E  
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNL----FTWSIMINGYAKNNCFE------KAIDLF-EFM 240

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
             + V  +E   VSV+S+CA LGA++ G + +  + K  + +N  L T+L+DM+ +CG++
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDI 300

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           +KA+ VF  +   D   WS++I G A++G   +A+  FS+M      P  VTFT VL AC
Sbjct: 301 EKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC 360

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SH GLV++G   +  M+  +G+ P ++HY C+VDMLGRAG L EA  FI KM + P A +
Sbjct: 361 SHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPI 420

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            GALLGACKI++N E+AE   + L++++PE+ G  VLLSNIYA  G+WD +  LR  M+ 
Sbjct: 421 LGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKE 480

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             +KK PG S IE++G+I+KF  G+   HP   +I  K +EI+ +++  GY  N      
Sbjct: 481 KLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFF 540

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            V+EE+ +E ++++HSE+LAIAYG++  +P   IRIVKNLRVC DCHTV KLIS++Y RE
Sbjct: 541 DVDEEE-KESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRE 599

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           +++RDR RFHHFR G CSC DYW
Sbjct: 600 LIVRDRNRFHHFRNGVCSCRDYW 622


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/668 (40%), Positives = 395/668 (59%), Gaps = 30/668 (4%)

Query: 14  TPVISLPRHPNPTTLTVNNG--HQHHPHPVFSLI--KQCKNIKQLKQIHTQMLRTGLFFD 69
           +   +LP H      +  N    Q     +  L+  K   ++  LKQ+H   LRTG F D
Sbjct: 2   STTTNLPYHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQD 61

Query: 70  PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
            Y +  L    A   FS+L +A ++F+ +P PN++ +N +I+    + EP ++   + ++
Sbjct: 62  HYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKM 121

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           +      PN+FT+P + KA         G  +H  VIK     D+ I ++ I  Y   G+
Sbjct: 122 MIAHAR-PNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGE 180

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  +    G  DV+ +N+MI G+++ G  E A EL+  ME +NV    V MV+ ++ 
Sbjct: 181 VEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV-MVSGMAK 239

Query: 250 CA-------------KKRDLEF---------GRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           C              +K ++ +         G +  EAL +F+ +Q  + + P +F   S
Sbjct: 240 CGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQ-REEIRPRKFVLSS 298

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL+ACA LGA+D G  IHA +       +  L T+L+DMY KCG LD A +VF  ++ ++
Sbjct: 299 VLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKE 358

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           VF W+ MI G  M+G   +A++LF +MQ+ K +PN +T   VL AC+HSG+VDEG   FN
Sbjct: 359 VFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFN 418

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            ME VYG+ PG++HY C+VD+LGRAGLL EA E +  MP+ P A+VWGALLGAC+ H +V
Sbjct: 419 SMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDV 478

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           EL E     LLELEP+N G   LLSNIYA+ G+WD+V+ +RK M+  G+K   G S I+ 
Sbjct: 479 ELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDF 538

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
           +G +H+F  G+ SHP  K IY  L  ++ RLK  G+ PN S +L  +EEE  +E  L  H
Sbjct: 539 DGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEE-EKEAELQYH 597

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LAIA+GLI+ +P   I +VKNLR+C DCH+  KLIS++Y+REI++RDR R+HHF+ G
Sbjct: 598 SEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTG 657

Query: 648 NCSCMDYW 655
            CSC D+W
Sbjct: 658 TCSCKDFW 665


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/619 (41%), Positives = 379/619 (61%), Gaps = 35/619 (5%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP+   +++C N+  LKQ+H QML TGL F  Y  S L    +   F+S  YA  +F+ I
Sbjct: 6   HPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSS--KFAS-TYAFTIFNHI 62

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           P P L+ +NTLI + +  ++ I  +F ++  ++ +    PN FTFP + KA A     + 
Sbjct: 63  PNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQH 122

Query: 158 GQAIHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           G  +H  V+K      D F+ NSL++FYA  G L ++  +F  I + D+ +WN+M++ + 
Sbjct: 123 GPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYA 182

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q                              S  +     E      EAL +F ++QLS+
Sbjct: 183 QSA----------------------------SHVSYSTSFEDADMSLEALHLFCDMQLSQ 214

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P+E T V+++SAC+ LGA+  G   H  + +  +KLN ++ T+L+DMY+KCG L+ A
Sbjct: 215 -IKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLA 273

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            ++F  +  RD F ++ MI GFA++G G +AL+L+  M+   + P+  T    + ACSH 
Sbjct: 274 CQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHG 333

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG   F  M+ V+G+ P ++HY C++D+LGRAG L EA E ++ MP+ P A +W +
Sbjct: 334 GLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRS 393

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA K+H N+E+ E A  HL+ELEPE  G  VLLSN+YA  G+W++V  +R  M+  G+
Sbjct: 394 LLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGV 453

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
            K PG S +E+NG +H+FL G+ +HP  KEIYSK+ EI  RL  +G+ P  S +L  VEE
Sbjct: 454 DKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEE 513

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E  L+ HSERLAIA+ LI+   S PIRI+KNLRVCGDCH + KLIS  Y R+I++R
Sbjct: 514 ED-KEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVR 572

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFHHF+ G+CSC+DYW
Sbjct: 573 DRNRFHHFKDGSCSCLDYW 591


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/687 (39%), Positives = 406/687 (59%), Gaps = 46/687 (6%)

Query: 1    MTDNPPQHMETLSTPVISLPRHPNPT----TLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ 56
            ++ +PP  ++ L T V+S+ + P  T     LT N   Q        ++ +  +IK LK+
Sbjct: 995  ISASPPSAVKQLQTLVLSIQK-PKFTQQXVVLTENLCGQ--------ILDKNPDIKYLKK 1045

Query: 57   IHTQM-LRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
            +H+++ +   L  +P    KL    A          R +FD+IP+ N+  +N +IR+Y +
Sbjct: 1046 LHSKICIDHDLHSNPSLGIKLMR--AYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 116  SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
            +     + ++F  +  +    P+ +T+P V+KA++      VG  IH  V++   + ++F
Sbjct: 1104 NHLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 1162

Query: 176  ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
            + N LI  Y  CG L  A  V   +  +DVVSWNS+++G  + G F+ A+E+ +EME+  
Sbjct: 1163 VGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG 1222

Query: 236  VKPDEVTMVAVLSACA---------------KKRDLEFGRW------------PNEALSI 268
            +KPD  TM ++L A                 K  +     W            P EA+ I
Sbjct: 1223 LKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDI 1282

Query: 269  FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
            F +++    V+PD  +  SVL AC  L A+ +G +IH  + ++ ++ N  L  +LIDMY 
Sbjct: 1283 FLQME-DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYA 1341

Query: 329  KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
            KCG L+ A EVF  +K RDV  W++MI+ + M G GR+A+ LFSRMQ+  + P+++ F +
Sbjct: 1342 KCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVS 1401

Query: 389  VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
            VL ACSH+GL+DEGR +F  M     +VP ++H+ CMVD+LGRAG +DEA  FI++MP+ 
Sbjct: 1402 VLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPME 1461

Query: 449  PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
            P   VWGALL AC+++ N+ +   A   L +L PE  G  VLLSNIYAK G+W++V+ +R
Sbjct: 1462 PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVR 1521

Query: 509  KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
              M+  G+KK PG S+ E++  +H FLAG+ SHP  K+IY +LD +V ++K  GYVP   
Sbjct: 1522 SIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETD 1581

Query: 569  HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
              L  VEEED +E  L +HSE+LAIA+ +++  P  PIRI KNLRVCGDCH  AKLISK+
Sbjct: 1582 SALHDVEEED-KECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKI 1640

Query: 629  YNREILLRDRYRFHHFRGGNCSCMDYW 655
              REI +RD  RFHHF  G CSC DYW
Sbjct: 1641 VGREITIRDTNRFHHFYNGVCSCGDYW 1667


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/601 (41%), Positives = 373/601 (62%), Gaps = 15/601 (2%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q+H  +L+ GL ++ +  + L     L     L+ AR +FD  P+ ++ TWN +I AY+
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
              +  +S  +FL ++ +    P   T   V+ A ++L   R G+ +H  V     E +L
Sbjct: 217 KVGKFEESRRLFL-VMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 275

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + N++I  YA CG++  A  +F  +  +D++SW +++SGF   G  + A   + +M   
Sbjct: 276 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP-- 333

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             + D V+  A++    +    +      EAL +F  +Q + NV PDEFT VSVL+ACA 
Sbjct: 334 --EKDYVSWTAMIDGYIRSNRFK------EALELFRNMQ-ATNVKPDEFTMVSVLTACAH 384

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           LGA+++G  I   + +  IK + ++  +LIDMY KCG++DKA  +F  +  RD F W+ M
Sbjct: 385 LGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAM 444

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G A+ G G +ALD+FS M +A + P+ +T+  VL AC+H+GLVD+GR +F +M   +G
Sbjct: 445 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 504

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P + HY C+VD+L RAG L EA E IE MPI   + VWGALL  C+++   ++AE   
Sbjct: 505 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 564

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             +LELEP+N    VLL NIYA   +W+++ ELR+ M   G+KK PGCS IE+NG +H+F
Sbjct: 565 KQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEF 624

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           +AG+ SHP  K I +KLD++   LK  GY P+ S +   + EED +E ++  HSE+LAIA
Sbjct: 625 VAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEED-KENSVFRHSEKLAIA 683

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLI+  P   IRI KNLR+C DCH +AKL+SK+YNRE+++RDR RFHHF+ G CSC DY
Sbjct: 684 FGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDY 743

Query: 655 W 655
           W
Sbjct: 744 W 744



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 243/508 (47%), Gaps = 94/508 (18%)

Query: 6   PQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG 65
           P+ M T++    +L     PT            HP+ SL++ C+++ QL+Q+H Q ++ G
Sbjct: 19  PKQMTTIAATSSALKSFSPPT------------HPLISLLETCESMDQLQQVHCQAIKKG 66

Query: 66  LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           L  +P   +++ T C    +   +YAR +FD+IP+PNL+ WNT+IR YS    P     +
Sbjct: 67  LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSL 126

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           +L+++      P+ +TFPF+ K   R +    G+ +HG V+K   + ++F+  +L+  Y 
Sbjct: 127 YLEMLRRGVK-PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYL 185

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
           +CG L  A  VF +  K DV++WN +IS + + G FE++  L+  ME + V P  VT+V 
Sbjct: 186 LCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVL 245

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
           VLSAC+K +DL  G+                                          ++H
Sbjct: 246 VLSACSKLKDLRTGK------------------------------------------KVH 263

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG--- 362
           + +K   ++ N  L  ++IDMY  CG +D AL +F ++ +RD+  W+T+++GF   G   
Sbjct: 264 SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEID 323

Query: 363 ----------------------------CGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
                                         +EAL+LF  MQ   VKP+  T  +VL AC+
Sbjct: 324 VARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACA 383

Query: 395 HSGLVDEG---RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           H G ++ G   R + ++ +    +   +     ++DM  + G +D+A     +M      
Sbjct: 384 HLGALELGEWIRTYIDRNK----IKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDK 438

Query: 452 SVWGALLGACKIHENVELAEYACSHLLE 479
             W A++    ++ + E A    S++L+
Sbjct: 439 FTWTAMIVGLAVNGHGEKALDMFSNMLK 466


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 368/615 (59%), Gaps = 44/615 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + + IK+C  +  LK I   M+R  L  D +  SKL    A+     + YA  +F     
Sbjct: 10  LVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHH 69

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PNL+ WNT+IR YS S  PI +  ++  + +     PN +TF FV+KA  +L++   GQ 
Sbjct: 70  PNLFMWNTIIRGYSISDSPITAIALYRDM-FLCGISPNSYTFGFVLKACCKLLRLCEGQE 128

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  ++K   + +  + N LI  YA CG +  A  +F  + + D  SW++M+SG+ Q G 
Sbjct: 129 LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNG- 187

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             +A+E                                      AL +F E+Q ++NV+ 
Sbjct: 188 --QAVE--------------------------------------ALKLFREMQ-AENVSS 206

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D FT  SV+  C  LGA+D+G  +H+ M K+G+K++  L T+L+ MY+KCG+LD AL+VF
Sbjct: 207 DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 266

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  RDV  WSTMIAG+A++G G +AL LF  M+ +K  PN VTFT+VL ACSHSGLV+
Sbjct: 267 QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVE 326

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           +G   F  M   Y + P +KHY CMVD+  RAG++  A +FI+ MPI P   +W  LLGA
Sbjct: 327 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGA 386

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CK H   +L E+    +L+L+P +    VL+SN+YA  G+W +V ++R  M+    KK+ 
Sbjct: 387 CKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQH 446

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G SSIE+N  +HKF+ G+ SHP  ++IY  L ++  +LK  G+V +   +L  ++EE+ +
Sbjct: 447 GWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEE-K 505

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E AL LHSERLAIAYGL+      PIRIVKNLRVC DCH V KLIS++YNREI++RDR R
Sbjct: 506 EYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVR 565

Query: 641 FHHFRGGNCSCMDYW 655
           FHHFR   CSC DYW
Sbjct: 566 FHHFRERGCSCNDYW 580



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 7/182 (3%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID--MYTKCGNLDKALE 338
           D+ + V+ +  C ++G +     I A M +  +  + +LT+ LI+    T  G++  A  
Sbjct: 6   DQGSLVAAIKRCTRVGDLK---AIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHR 62

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F      ++F+W+T+I G+++      A+ L+  M    + PN+ TF  VL AC     
Sbjct: 63  IFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLR 122

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           + EG+   +Q+  V G+         ++ +    G +D A    ++MP  P ++ W  ++
Sbjct: 123 LCEGQELHSQIVKV-GLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWSTMV 180

Query: 459 GA 460
             
Sbjct: 181 SG 182


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/601 (41%), Positives = 373/601 (62%), Gaps = 15/601 (2%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q+H  +L+ GL ++ +  + L     L     L+ AR +FD  P+ ++ TWN +I AY+
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLC--GQLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
              +  +S  +FL ++ +    P   T   V+ A ++L   R G+ +H  V     E +L
Sbjct: 196 KVGKFEESRRLFL-VMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNL 254

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + N++I  YA CG++  A  +F  +  +D++SW +++SGF   G  + A   + +M   
Sbjct: 255 VLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP-- 312

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             + D V+  A++    +    +      EAL +F  +Q + NV PDEFT VSVL+ACA 
Sbjct: 313 --EKDYVSWTAMIDGYIRSNRFK------EALELFRNMQ-ATNVKPDEFTMVSVLTACAH 363

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           LGA+++G  I   + +  IK + ++  +LIDMY KCG++DKA  +F  +  RD F W+ M
Sbjct: 364 LGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAM 423

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G A+ G G +ALD+FS M +A + P+ +T+  VL AC+H+GLVD+GR +F +M   +G
Sbjct: 424 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 483

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P + HY C+VD+L RAG L EA E IE MPI   + VWGALL  C+++   ++AE   
Sbjct: 484 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 543

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             +LELEP+N    VLL NIYA   +W+++ ELR+ M   G+KK PGCS IE+NG +H+F
Sbjct: 544 KQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEF 603

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           +AG+ SHP  K I +KLD++   LK  GY P+ S +   + EED +E ++  HSE+LAIA
Sbjct: 604 VAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEED-KENSVFRHSEKLAIA 662

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLI+  P   IRI KNLR+C DCH +AKL+SK+YNRE+++RDR RFHHF+ G CSC DY
Sbjct: 663 FGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDY 722

Query: 655 W 655
           W
Sbjct: 723 W 723



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 233/475 (49%), Gaps = 82/475 (17%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP+ SL++ C+++ QL+Q+H Q ++ GL  +P   +++ T C    +   +YAR +FD+I
Sbjct: 19  HPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEI 78

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+PNL+ WNT+IR YS    P     ++L+++      P+ +TFPF+ K   R +    G
Sbjct: 79  PEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK-PDRYTFPFLFKGFTRDIALEYG 137

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG V+K   + ++F+  +L+  Y +CG L  A  VF +  K DV++WN +IS + + 
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G FE++  L+  ME + V P  VT+V VLSAC+K +DL  G+                  
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK------------------ 239

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                                   ++H+ +K   ++ N  L  ++IDMY  CG +D AL 
Sbjct: 240 ------------------------KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 275

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYG-------------------------------CGREA 367
           +F ++ +RD+  W+T+++GF   G                                 +EA
Sbjct: 276 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 335

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG---RMFFNQMEPVYGVVPGVKHYTC 424
           L+LF  MQ   VKP+  T  +VL AC+H G ++ G   R + ++ +    +   +     
Sbjct: 336 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK----IKNDLFVRNA 391

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           ++DM  + G +D+A     +M        W A++    ++ + E A    S++L+
Sbjct: 392 LIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 445


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/656 (39%), Positives = 390/656 (59%), Gaps = 63/656 (9%)

Query: 61  MLRTGLFFDPYSASKLFTPC-ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
           M+ TG      S +KL     ++G+   + YA  +F    + ++ TWN+++RA+ +S  P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMP 59

Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
            ++   + +++  S   P+ FTFP ++K  A L++F+VG+ +HG V+K     DL+I  +
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L++ YA CGDL  A  +F  +G ++ V W SMISG+++     +A+ LY++ME +   PD
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 240 EVTMVAVLSAC-----------------------------------AKKRDLEFGR---- 260
           EVTM  ++SAC                                   AK  DL+  R    
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 261 ---------WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
                    W              EAL +F E+    N+ P+E T ++V+SACAQLG ++
Sbjct: 240 KLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G  +H  + +     +  L  SLIDM++KCG++D A  +F ++  +D+  W++M+ GFA
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA 359

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           ++G GREAL  F  MQ   ++P+ +TF  VL ACSH+GLV EG+  F ++E +YGV    
Sbjct: 360 LHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY CMVD+L RAGLL EA EFI  MP+ P  ++WG++LGAC+++ N+EL E A   LL+
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLK 479

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           LEP N G  +LLSNIYAK   W+ V ++R+ M   G++K PGCSS+ ++   H FLAG+ 
Sbjct: 480 LEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDC 539

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SHP   EI   L ++  +LK  GYV + S +L L  +++ +E++++ HSE+LA+ YGL+ 
Sbjct: 540 SHPEIAEISIMLRQVREKLKLAGYVADTSEVL-LNIDDNKKEESVSQHSEKLALCYGLLK 598

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            E    I I+KNLRVC DCHT+ KL+SK+Y R+I LRDR RFHHF+ G+CSC DYW
Sbjct: 599 SEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/641 (38%), Positives = 395/641 (61%), Gaps = 28/641 (4%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYA 91
           N   ++P      IK CK++++LKQ+H  +++TG   D   A+++    A   F  + YA
Sbjct: 9   NTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYA 68

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEP-IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
             +FDQ+P+ N + WNT+IRA + + +  + + ++F Q++  +   PN+FTFP V+KA A
Sbjct: 69  LSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACA 128

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV--MIGKKDV--- 205
            + +   G+ +HG+++K    DD F+  +L+  Y +CG +  A  +F   + G  DV   
Sbjct: 129 VMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNL 188

Query: 206 -----------VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
                      V  N M+ G+ + G  + A EL+  M   +V    V+   ++S  A+  
Sbjct: 189 VRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSV----VSWNVMISGYAQNG 244

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                 +  EA+ IFH +    +V P+  T VSVL A ++LG +++G  +H   +K  I+
Sbjct: 245 ------FYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIR 298

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
           ++  L ++L+DMY KCG+++KA++VF  +   +V  W+ +I G AM+G   +  +  SRM
Sbjct: 299 IDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRM 358

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           ++  + P+ VT+  +L ACSH+GLVDEGR FFN M    G+ P ++HY CMVD+LGRAG 
Sbjct: 359 EKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGY 418

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L+EA E I  MP+ P   +W ALLGA K+H+N+++   A   L+++ P + GA V LSN+
Sbjct: 419 LEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNM 478

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA +G WD V+ +R  M+   ++K+PGCS IE++G IH+FL  + SH   K+I+S L+EI
Sbjct: 479 YASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEI 538

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             +L   G++P+ + +L  ++E+  +E  L+ HSE++A+A+GLIS  P  P+ IVKNLR+
Sbjct: 539 SNKLSLEGHMPDTTQVLLKMDEKH-KESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRI 597

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH+  KLISK+Y R+I++RDR RFHHF  G+CSCMDYW
Sbjct: 598 CEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/622 (40%), Positives = 400/622 (64%), Gaps = 17/622 (2%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQ 97
           +PV S++ +CK++ +L+QIH QM++T L    ++ S+L   C+L G    L+YA  +F +
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSR 66

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFR 156
           I  PN + +  LI+ +S ++ P++S +++ +++    Y    EF+ P V+KA  +L+ F 
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFD 126

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG V+K+    D F+ NS++  Y   G++ +A  VF  +  +DVVSWNSMI+G++
Sbjct: 127 EGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  E A +++  M  ++V    VT  +++SA  + R       P +AL +F E+ LS 
Sbjct: 187 KAGEIELAKKVFETMSDKDV----VTWTSMISAYVQNR------CPMKALDLFREM-LSL 235

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-YLTTSLIDMYTKCGNLDK 335
            + PD    VSVLSA A LG ++ G  +HA +    I+L+  ++ ++LIDMY+KCG ++ 
Sbjct: 236 GLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIEN 295

Query: 336 ALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           A  VF ++   R++  W++MI+G A++G  REALD+F  M+   ++PN +TF  +L  CS
Sbjct: 296 AYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCS 355

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GLV+EG+ +F  M   Y +VP ++HY CM+D+ GRAG L++A+  I+ MP       W
Sbjct: 356 HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAW 415

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            A+L A   H ++E+ + A    +EL P++  + VLLSNIYAK G+WD+V+++R  MR  
Sbjct: 416 KAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQR 475

Query: 515 GLKKEPGCSSIEVNGEIHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
           G+KK  GCSS+ VNG++H+FL G E       ++ +K+ E+V+RLK  GY P+ + +L  
Sbjct: 476 GVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLD 535

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           +E+E  +E  LNLHSE++AIA+GLI +  S PI IVKNLRVC DCH   KL+SK+YNR+I
Sbjct: 536 IEDEG-KESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQI 594

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RD+ RFHHF  G CSC +YW
Sbjct: 595 IMRDQNRFHHFENGCCSCNEYW 616


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/672 (40%), Positives = 388/672 (57%), Gaps = 65/672 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           LI+    +K LK IH  +LR GL  D Y  +K+        F +  Y+  + DQ  +PN+
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSF--NFGNTNYSFRILDQTKEPNI 73

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           + +NT+IR    +    +S  I+  +       P+ FTFPFV+KA AR++   +G  +H 
Sbjct: 74  FLFNTMIRGLVLNDCFQESIEIYHSM-RKEGLSPDSFTFPFVLKACARVLDSELGVKMHS 132

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           +V+K+  E D F+  SLI+ Y  CG +  A+ VF  I  K+  SW + ISG+V  G   +
Sbjct: 133 LVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCRE 192

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE------------------- 264
           AI+++R +    ++PD  ++V VLSAC +  DL  G W +E                   
Sbjct: 193 AIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVD 252

Query: 265 ----------ALSIFHELQLSKNV-------------------------------NPDEF 283
                     A S+F  + L KN+                                PD +
Sbjct: 253 FYGKCGNMERARSVFDGM-LEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
             V VL +CA+LGA+++G      +       N  L T+LIDMY KCG +D+A EVF  +
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           + +D  VW+  I+G AM G  ++AL LF +M+++ +KP+  TF  +LCAC+H+GLV+EGR
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +FN ME V+ + P ++HY CMVD+LGRAG LDEA + I+ MP+   A VWGALLG C++
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H + +L E     L+ LEP + G  VLLSNIYA + KW+  +++R  M   G+KK PG S
Sbjct: 492 HRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            IEV+G +H+FL G++SHPL ++IY+KL E+   LK+ GYVP   H+L  +EEE+ +E  
Sbjct: 552 WIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEE-KEHF 610

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           +  HSE+LA+A+GLIS  P+  I +VKNLRVCGDCH   K IS++  REI++RD  RFH 
Sbjct: 611 IGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHC 670

Query: 644 FRGGNCSCMDYW 655
           F  G CSC DYW
Sbjct: 671 FTDGLCSCKDYW 682


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/610 (42%), Positives = 387/610 (63%), Gaps = 16/610 (2%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           C ++ ++KQ H+ +LR GL  + ++ S++FT C+L     + YA ++F  +P P+ + +N
Sbjct: 12  CSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYN 71

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           TL +A+ S ++     ++F   +      PN FTFP +I+A     +    + +H  V+K
Sbjct: 72  TLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEE---AKQLHAHVLK 128

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
             F  D +  N+LIH Y   G L  A  VF  +   +VVSW S++SG+ Q G  ++A   
Sbjct: 129 FGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEA--- 185

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           +R  E+   K + V+  A+++   K      G    EA ++F  +++ K +  D F   +
Sbjct: 186 FRVFELMPCKKNSVSWNAMIACFVK------GNRFREAFALFRRMRVEKKMELDRFVAAT 239

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +LSAC  +GA++ G+ IH  ++K GI L+  L T++IDMY KCG LDKA  VF  +K + 
Sbjct: 240 MLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKR 299

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           V  W+ MI GFAM+G G +A+ LF  M+E A V P+++TF NVL AC+HSGLV+EG  +F
Sbjct: 300 VSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYF 359

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M  V+G+ P  +HY CMVD+L RAG L+EA + I++MP+ P A+V GALLGAC+IH N
Sbjct: 360 RYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGN 419

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           +EL E   + ++EL+PEN G  V+L N+YA  GKW+ V+ +RK M   G+KKEPG S IE
Sbjct: 420 LELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIE 479

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ-LVEEEDVQEQALN 585
           + G +++F+AG   HPL + IY+K+ E++  ++  G+VP+   +L  LVEEE  +E  L 
Sbjct: 480 MEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEE--RENPLF 537

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LAIAYGL+  +  + +R+ KNLRVC DCH  +K+ISK+Y+ +I++RDR RFHHF 
Sbjct: 538 YHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFS 597

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 598 NGECSCKDYW 607



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 166/409 (40%), Gaps = 67/409 (16%)

Query: 4   NPPQHM-ETLSTPVISLPRHPNPTTLTVNNGHQHHPHP---VF-SLIKQCKNIKQLKQIH 58
           NP   +  TL     SL + P+ + L  ++  QH   P    F SLI+ CK  ++ KQ+H
Sbjct: 64  NPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLH 123

Query: 59  TQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS---- 114
             +L+ G   D Y+ + L        F SL+ AR +F  +  PN+ +W +L+  YS    
Sbjct: 124 AHVLKFGFGGDTYALNNLIH--VYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGL 181

Query: 115 ----------------------------SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
                                             ++F +F ++        + F    ++
Sbjct: 182 VDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATML 241

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A   +     G  IH  V K+    D  ++ ++I  Y  CG L  A+ VF  +  K V 
Sbjct: 242 SACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVS 301

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           SWN MI GF   G  E AI L++EME E  V PD +T V VL+ACA    +E G +    
Sbjct: 302 SWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRY 361

Query: 266 LSIFHELQLSKN--------------------------VNPDEFTFVSVLSACAQLGAMD 299
           +   H +  +K                           ++PD     ++L AC   G ++
Sbjct: 362 MVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLE 421

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           +G ++  ++ +   + N      L +MY  CG  ++   V   +  R V
Sbjct: 422 LGEEVGNRVIELDPE-NSGRYVILGNMYASCGKWEQVAGVRKLMDDRGV 469


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/634 (41%), Positives = 382/634 (60%), Gaps = 33/634 (5%)

Query: 50  NIKQLKQIHTQM-LRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           +IK LK++H+++ +   L  +P    KL    A          R +FD+IP+ N+  +N 
Sbjct: 50  DIKYLKKLHSKICIDHDLHSNPSLGIKLMR--AYAVCGEPWSTRHIFDEIPKKNVVFFNV 107

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +IR+Y ++     + ++F  +  +    P+ +T+P V+KA++      VG  IH  V++ 
Sbjct: 108 MIRSYVNNHLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRV 166

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             + ++F+ N LI  Y  CG L  A  V   +  +DVVSWNS+++G  + G F+ A+E+ 
Sbjct: 167 GLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVC 226

Query: 229 REMEMENVKPDEVTMVAVLSACA---------------KKRDLEFGRW------------ 261
           +EME+  +KPD  TM ++L A                 K  +     W            
Sbjct: 227 KEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSM 286

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P EA+ IF +++    V+PD  +  SVL AC  L A+ +G +IH  + ++ ++ N  L  
Sbjct: 287 PAEAVDIFLQME-DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLEN 345

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LIDMY KCG L+ A EVF  +K RDV  W++MI+ + M G GR+A+ LFSRMQ+  + P
Sbjct: 346 ALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP 405

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +++ F +VL ACSH+GL+DEGR +F  M     +VP ++H+ CMVD+LGRAG +DEA  F
Sbjct: 406 DSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGF 465

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I++MP+ P   VWGALL AC+++ N+ +   A   L +L PE  G  VLLSNIYAK G+W
Sbjct: 466 IKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRW 525

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++V+ +R  M+  G+KK PG S+ E++  +H FLAG+ SHP  K+IY +LD  V ++K  
Sbjct: 526 EDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEA 585

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP     L  VEEED +E  L +HSE+LAIA+ +++  P  PIRI KNLRVCGDCH  
Sbjct: 586 GYVPETDSALHDVEEED-KECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIA 644

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AKLISK+  REI +RD  RFHHF  G CSC DYW
Sbjct: 645 AKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/625 (42%), Positives = 386/625 (61%), Gaps = 21/625 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL---GTFSS----LEYA 91
           HP  +L++ C +   LK IH  +LRT L  D + AS+L          TF      L YA
Sbjct: 13  HPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYA 72

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
             +F QI  PNL+ +N LIR +S+ AEP ++F  + Q++  S  +P+  TFPF+IKA+  
Sbjct: 73  YGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASTE 131

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +    VG+  H  +++  F++D+++ NSL+H YA CG +A A  +F  +  +DVVSW SM
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           ++G+ + G  E A E++ EM   N+     T   +++  AK    E      +A+ +F E
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNL----FTWSIMINGYAKNNCFE------KAIDLF-E 240

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           L   + V  +E   VSV+S+CA LGA++ G + H  + K  + +N  L T+L+DMY +CG
Sbjct: 241 LMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCG 300

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            ++KA+ VF  +  +D   WS++I G A++G   +A+  FS+M      P  +T T VL 
Sbjct: 301 EIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLS 360

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH GLVD+G   +  M+  YG+ P ++HY C+VDMLGRAG L EA  FI KMP+ P A
Sbjct: 361 ACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNA 420

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            + GALLGACKI++N E+AE   + L+E++PE+ G  VLLSNIYA  G+W+ +  LR  M
Sbjct: 421 PILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIM 480

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           +   +KK PG S IE++G+I+KF  G+   HP   +I    +EI+ +++  GY  N    
Sbjct: 481 KEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDA 540

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
              V+EE+ +E A+++HSE+LAIAYG++  +    IRIVKNLRVC DCHT  KLIS++Y 
Sbjct: 541 FFDVDEEE-KETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYG 599

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           RE ++RDR RFHHFR G CSC DYW
Sbjct: 600 REFIVRDRNRFHHFRNGLCSCRDYW 624


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/616 (42%), Positives = 376/616 (61%), Gaps = 19/616 (3%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SLI  CK+I Q+KQ H  ++ T     P  A+K     AL   +SL YA ++FDQIPQP+
Sbjct: 184 SLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVAL---ASLTYAHKLFDQIPQPD 240

Query: 103 LYTWNTLIRAYSSSAEP-IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           L+ +NT+I+++S S    + S  +F  L+ +S YFPN ++F F   A    +  R G+ +
Sbjct: 241 LFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQV 300

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
               +K   + ++F+ N+LI  +   G +  A  VF     +D  SWN+MI  +V  G  
Sbjct: 301 FTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNM 360

Query: 222 EKAIELYREM-EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             A EL+ EM E + V    +    V   C             EAL  FH++ L   V P
Sbjct: 361 VLAKELFDEMHERDVVSWSTIIAGYVQVGCFM-----------EALDFFHKM-LQSEVKP 408

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           +E+T VS L+AC+ L A+D G  IH  +++  IK+N  L  SLIDMY KCG +D A  VF
Sbjct: 409 NEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVF 468

Query: 341 HTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           H  K  R V+ W+ MI GFAM+G   EA+++F +M+  KV PN VTF  +L ACSH  +V
Sbjct: 469 HEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMV 528

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG+ +F  M   YG+ P ++HY CMVD+L R+G L ++ E I  MP+ P  ++WGALL 
Sbjct: 529 KEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLN 588

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-SGLKK 518
           AC+I++++E        + E++P + G  VLL NIY+ +G+W+    +R+   + S  KK
Sbjct: 589 ACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKK 648

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG SSIE+NG  H+FL G+ SHP  +EIYS LDE++++LK  GYVP    +L   ++E+
Sbjct: 649 IPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEE 708

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL++HSE+LAIA+GL++  P  PIRIVKNLRVCGDCH   K ISK+Y+R I++RDR
Sbjct: 709 DKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDR 768

Query: 639 YRFHHFRGGNCSCMDY 654
            R+HHF+ G CSC DY
Sbjct: 769 MRYHHFKDGICSCKDY 784


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/656 (39%), Positives = 388/656 (59%), Gaps = 63/656 (9%)

Query: 61  MLRTGLFFDPYSASKLFTPC-ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
           M+ TG      S +KL     ++G+   + YA  +F      ++ TWN+++RA+ +S  P
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLG-VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMP 59

Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
            ++   + +++  S   P+ FTFP ++K  A L++F+VG+ +HG V+K     DL+I  +
Sbjct: 60  RRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETT 119

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L++ YA CGDL  A  +F  +G ++ V W SMISG+++     +A+ LY++ME +   PD
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 240 EVTMVAVLSAC-----------------------------------AKKRDLEFGR---- 260
           EVTM  ++SAC                                   AK  DL+  R    
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 261 ---------WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
                    W              EAL +F E+    N+ P+E T ++V+SACAQLG ++
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G  +H  + +     +  L  SLIDM++KCG++D A  +F ++  +D+  W++M+ G A
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA 359

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           ++G GREAL  F  MQ   ++P+ +TF  VL ACSH+GLV EG+  F ++E +YGV    
Sbjct: 360 LHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY CMVD+L RAGLL EA EFI  MP+ P  ++WG++LGAC+++ N+EL E A   LLE
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLE 479

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           LEP N G  +LLSNIYA+   W+ V ++R+ M   G++K PGCSS+ ++   H FLAG+ 
Sbjct: 480 LEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDC 539

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SHP   EI   L ++  +LK  GYV + S +L L  +++ +E++++ HSE+LA+ YGL+ 
Sbjct: 540 SHPEIAEISIMLRQVREKLKLVGYVADTSEVL-LNIDDNKKEESVSQHSEKLALCYGLLK 598

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            E    I I+KNLRVC DCHT+ KL+SK+Y R+I LRDR RFHHF+ G+CSC DYW
Sbjct: 599 SEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/634 (40%), Positives = 377/634 (59%), Gaps = 34/634 (5%)

Query: 50  NIKQLKQIHTQML-RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           + K LK++H+++L    L  +P    KL    A        Y R +FD+I   N+  +N 
Sbjct: 50  DAKTLKKLHSKILIDQNLHPNPSLGIKLMR--AYAACGEPCYTRHIFDEITDKNVVFFNV 107

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +IR+Y ++     + ++F + + N  ++P+ +T+P V+KA +      VG  IHG V+K 
Sbjct: 108 MIRSYVNNGLYQDALLVF-KTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKL 166

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             + +L+I N L+  Y  C  L  A  V   +  +D+VSWNSM++G+ Q G F  A++L 
Sbjct: 167 GLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLC 226

Query: 229 REMEMENVKPDEVTMVAVLSACA---------------KKRDLEFGRW------------ 261
           REME   +KPD  TM ++L A                 K ++     W            
Sbjct: 227 REMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAM 286

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           PNEA+ ++ ++Q+   V PD  +  SVL AC  L A  +G +IH  ++++ ++ N  L  
Sbjct: 287 PNEAVDLYLQMQV-HGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLEN 345

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LIDMY KCG L +A  VF  +  RDV  W++MI+ + M G G++A+ LF +M+++   P
Sbjct: 346 ALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTP 405

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + + F +VL ACSH+GLVDEGR  FN M   YG+ PG++HY CMVD+LGRAG +DEA   
Sbjct: 406 DWIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHL 464

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
             +MP+ P   VWG+LL AC+++ ++ +A  A  HL +L PE  G  VLLSNIYAK G+W
Sbjct: 465 TRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRW 524

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            +V  +R  M   G+KK PG S++E+N  ++ FLAG+ SH   KEIY  L  +V R+K  
Sbjct: 525 QDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKEL 584

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY+P     L  VEEED +E  L +HSE+LAI + +++ +P   IRI KN+RVCGDCH  
Sbjct: 585 GYMPETDSALHDVEEED-KECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVA 643

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KLISK+  REI++RD +RFHHFR G CSC DYW
Sbjct: 644 TKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/639 (41%), Positives = 381/639 (59%), Gaps = 54/639 (8%)

Query: 21  RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           R PNP++           HP   L+++CK +  LKQ+H  M+ TGL F  Y  S++    
Sbjct: 2   RGPNPSS----------NHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLIS 51

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVYNSPYFPNE 139
           +   F+   +A  +F+ IP P ++ +NTLI + ++       +F ++ +++ ++   PN 
Sbjct: 52  STIVFT---HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNG 108

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED---DLFISNSLIHFYAICGDLAMAYCV 196
           FTFP + KA       R G+A+H  V+K  F +   D F+  +L+++YA CG +     +
Sbjct: 109 FTFPSLFKACGSQPWLRHGRALHTHVLK--FLEPTCDPFVQAALLNYYAKCGKVGACRYL 166

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  I K D+ SWNS++S +V                                A  +   L
Sbjct: 167 FNQISKPDLASWNSILSAYVHNS----------------------------GAICEDVSL 198

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  E L++F E+Q S  +  +E T V+++SACA+LGA+  G   H  + K  +KLN
Sbjct: 199 SL-----EVLTLFIEMQKSL-IKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLN 252

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            ++ T+LIDMY+KCG LD A ++F  +  RD   ++ MI GFA++G G +ALDLF +M  
Sbjct: 253 HFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTL 312

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             + P+ VT    +C+CSH GLV+EG   F  M+ VYGV P ++HY C+VD+LGRAG L 
Sbjct: 313 EGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLR 372

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA E +  MP+ P A +W +LLGA ++H N+E+ E    HL++LEPE  G  VLLSN+YA
Sbjct: 373 EAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYA 432

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              +WD+V  +RK M+  G+ K PG S +EV G +H+FL G+ +HP  KEIY KL+E+  
Sbjct: 433 SINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSR 492

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           RL  +G+ P    +L  +EEE+ +E AL+ HSERLAIA+ LI+     PIRI+KNLRVCG
Sbjct: 493 RLHEYGHKPRTLEVLFDIEEEE-KEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCG 551

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHT +KLISK+Y REI++RDR RFHHF+ G CSC DYW
Sbjct: 552 DCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/616 (41%), Positives = 382/616 (62%), Gaps = 19/616 (3%)

Query: 46  KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFDQIPQPNLY 104
           ++C+++ QL+Q H+Q++R GL    +    L   CA  + S +L YA ++FD IPQP+ +
Sbjct: 30  EKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAF 89

Query: 105 TWNTLIRAY-SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +NT+I+ +  S   P  S ++    +  +   PN FTFP ++ A  ++     G  IH 
Sbjct: 90  LYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIHA 146

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            + K  F       NSLIH Y     L  A  VF  I   D VSW S+ISG+ + G  ++
Sbjct: 147 HLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDE 206

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A  +++ M  +N       M A +            R+ +EA ++F  ++   N   D+F
Sbjct: 207 AFTIFQLMPQKNSASWNAMMAAYVQT---------NRF-HEAFALFDRMKAENNNVLDKF 256

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
              ++LSAC  LGA+D G  IH  +K+ GI+L+  LTT+++DMY KCG L+KAL+VFH++
Sbjct: 257 VATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSL 316

Query: 344 K--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
               R +  W+ MI G AM+G G  A+ LF  M+  +V P+ +TF N+L AC+HSGLV+E
Sbjct: 317 PLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEE 376

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR +F+ M  VYG+ P ++H+ CMVD+LGRAG++ EA + I++MP+ P  +V G LLGAC
Sbjct: 377 GRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGAC 436

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           K H N+EL E     ++ELEP N G  VLL+N+YA  GKW++ +++RK M   G+KK PG
Sbjct: 437 KKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPG 496

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL--QLVEEEDV 579
            S IE+ G +H+F+AGE +HP  KE+++K+ E++  LKS GYV + + +L     +EE+ 
Sbjct: 497 FSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEED 556

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            E  L  HSE+LAIA+GL   +P + +RI+KNLR+C DCH   KLIS +++REI++RDR 
Sbjct: 557 GENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRT 616

Query: 640 RFHHFRGGNCSCMDYW 655
           RFH F+ G CSC DYW
Sbjct: 617 RFHRFKMGQCSCQDYW 632


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/639 (41%), Positives = 381/639 (59%), Gaps = 35/639 (5%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           + Q  +IK LK++HT +       +P    KL    A      L   R++FD++   N+ 
Sbjct: 28  LDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGL--TRKVFDEMSDRNVV 85

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            +N +IR+Y ++       ++F ++V N  + P+ +T+P V+KA +     R G  IHG 
Sbjct: 86  FYNVMIRSYVNNHRYDDGLLVFREMV-NGGFRPDNYTYPCVLKACSCSENLRYGLLIHGD 144

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           V+K   + +LF+ N LI  Y  CG L  A  VF  +  KDVVSWNSM++G+     F+ A
Sbjct: 145 VLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDA 204

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKR------------DLE---FGRW-------- 261
           +E+ REME    KPD  TM +++ A A               +LE      W        
Sbjct: 205 LEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYM 264

Query: 262 ----PNEALSIFHELQLSK-NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
               P +A+ ++  LQ+ K  V PD  TF SVL AC  L A+ +G +IH  ++K+ +  N
Sbjct: 265 KNSLPTQAVDLY--LQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPN 322

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L  SLIDMY +CG LD A  VF  +K RDV  W+++I+ + M G G  A+ LF+ M  
Sbjct: 323 LLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLN 382

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           +   P+++ F  +L ACSHSGL+DEGR++F QM   Y + P ++HY C+VD+LGRAG +D
Sbjct: 383 SGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVD 442

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA   I++MPI P   VW  LL +C++  N+++   A  +LL+L PE  G  VLLSNIYA
Sbjct: 443 EAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYA 502

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           K G+W  V+E+R  M+   ++K PG S++E+N ++H FLAG++SHP  KEIY +L  +VA
Sbjct: 503 KAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVA 562

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           ++K  GYVP     L  VEEED +E  L +HSE+LAI + L++ +  Q IRI KNLRVCG
Sbjct: 563 KMKELGYVPETDSALHDVEEED-KEGHLAVHSEKLAIVFALLNTQEYQ-IRITKNLRVCG 620

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH  AKLISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 621 DCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 67/385 (17%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           +F  + KA  +    +  + +H M+   +   +  +   L+  YA CG+  +   VF  +
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             ++VV +N MI  +V    ++  + ++REM     +PD  T   VL AC+   +L +  
Sbjct: 80  SDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRY-- 137

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                                                   G+ IH  + K G+  N ++ 
Sbjct: 138 ----------------------------------------GLLIHGDVLKVGLDFNLFVG 157

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
             LI MY KCG L +A  VF  +  +DV  W++M+AG+A      +AL++   M++   K
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQK 217

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P+  T  +++ A +++    E  ++  ++  V      +  +  M+ +  +  L  +AV+
Sbjct: 218 PDGCTMASLMPAVANTS--SENVLYVEKI-FVNLERKNLISWNVMIRVYMKNSLPTQAVD 274

Query: 441 F---IEKMPIVPGASVWGALLGAC----------KIHENVELAEYACSHLLELEPENHGA 487
               +EK  + P A  + ++L AC          +IHE VE  +   + LLE        
Sbjct: 275 LYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENS------ 328

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMR 512
              L ++YA+ G  D+   +   M+
Sbjct: 329 ---LIDMYARCGCLDDAKRVFDRMK 350


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/640 (40%), Positives = 381/640 (59%), Gaps = 33/640 (5%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+ +C ++K  KQIH Q+ +TGL  DP    KL   CA+    +L YA  +F   P P+
Sbjct: 7   SLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPD 66

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
            +  NTLIR+ S S  P+ S   F+QL       P+ FTF F +KA A     R G  +H
Sbjct: 67  TFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
               +  F+  +F+  +LI  YA CGD   A  VF  + + +VV+WN++++   + G  E
Sbjct: 127 SQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVE 186

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------WP------- 262
            A +++  M + N+     +   +L+  AK  +L   R             W        
Sbjct: 187 GAQDVFGCMPVRNL----TSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFA 242

Query: 263 -----NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                +EA   F EL L + +  +E +   VLSACAQ GA + G  +H  ++K G     
Sbjct: 243 HNGCFDEAFGFFREL-LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVG 301

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            +  +LID Y+KCGN+  A  VF  +  +R +  W+++IAG AM+GCG EA+ LF  M+E
Sbjct: 302 SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + V+P+ +TF ++L ACSHSGLV+EG   F++M+ +YG+ P ++HY CMVD+ GRA  L 
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQ 421

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A EFI +MP+ P A +W  LLGAC IH N+E+AE   + L E++P+N G  VLLSN+YA
Sbjct: 422 KAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYA 481

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             GKW +VS +R+ M    +KK PG S IE++  I+ F+AGE  + + +E + KL EI+ 
Sbjct: 482 VAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIML 541

Query: 557 RLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           RL++  GY P    +L  +EEE+ +E +++ HSE+LA A+G+  +   + +RIVKNLRVC
Sbjct: 542 RLRTEAGYAPQLRSVLHDIEEEE-KEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVC 600

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCHTV KLISK+Y  EI++RDR RFH F+ G CSC DYW
Sbjct: 601 GDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/616 (42%), Positives = 377/616 (61%), Gaps = 47/616 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L   C +I + KQ H  +LRT L  +P  +SKL +  AL     L YAR++F Q+  P+ 
Sbjct: 17  LKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDP 76

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           +  NT+IR Y+ S  P ++  ++  +V       N +T+PFV+ A ARL   ++G+  H 
Sbjct: 77  FICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDN-YTYPFVLAACARLGAVKLGRRFHC 135

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            V+K+ F  DLF+ N+LI FY  CG    A  VF     +DVV+WN MI+  +  G  EK
Sbjct: 136 EVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEK 195

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A +L  EM     K D                                     N+ PDE 
Sbjct: 196 AFDLLDEM----TKLD-------------------------------------NLRPDEV 214

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNC--YLTTSLIDMYTKCGNLDKALEVF 340
           T VS++ ACAQLG ++ G  +H+  K+    ++NC   L T+L+DMY KCG++D AL+VF
Sbjct: 215 TMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVF 274

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             ++ R+VF W+ +I G AM+G G +A+ LF +M+  K+ P+ VTF  +LCACSH+GLVD
Sbjct: 275 RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVD 334

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG   F  M+  + + P ++HY C+VD+L RA  +D+A+ FIE MPI   + +W  LLGA
Sbjct: 335 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 394

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C+   + +LAE     ++ELEP++ G  V+LSN+YA   +WD+  +LRK M+  G++K P
Sbjct: 395 CRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTP 454

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDV 579
           GCS IE+NG IH+F+AG+ SH   ++IY+ ++E+  R+    G+VP  +++L  +EEE+ 
Sbjct: 455 GCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEE- 513

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E +L LHSE+LAIA GLIS     PIRIVKNLRVC DCH+  K+ SK+YNREI+ RDR 
Sbjct: 514 KEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRS 573

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G+CSCMD+W
Sbjct: 574 RFHHFKEGSCSCMDFW 589


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/574 (43%), Positives = 366/574 (63%), Gaps = 13/574 (2%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           LG    +  A ++F+++ + ++ +W+ LI  Y  +    ++ ++F+++  N     +E  
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL-DEVV 306

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A A L   + G+ IHG+VI+   E  + + N+LIH Y+  G++  A  +F    
Sbjct: 307 VVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH 366

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             D +SWNSMISG ++ G  EKA  L+  M     + D V+  AV+S  A+         
Sbjct: 367 NLDQISWNSMISGCMKCGSVEKARALFDVMP----EKDIVSWSAVISGYAQHDCF----- 417

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            +E L++FHE+QL + + PDE   VSV+SAC  L A+D G  +HA ++K G+K+N  L T
Sbjct: 418 -SETLALFHEMQLGQ-IRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGT 475

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY KCG ++ ALEVF+ ++ + V  W+ +I G A+ G    +LD+FS M+   V P
Sbjct: 476 TLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIP 535

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N +TF  VL AC H GLVDEGR  F  M   +G+ P VKHY CMVD+LGRAGLL+EA + 
Sbjct: 536 NEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKL 595

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           IE MP+ P  + WGALLGACK H + E+ E     L+EL+P++ G  VLLSNI+A  G W
Sbjct: 596 IESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDW 655

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++V E+R  M+  G+ K PGCS IE NG +H+FLAG+ +HP   ++   L+E+  RLK  
Sbjct: 656 EDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKME 715

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY P+ + +   ++EE+ +E  L  HSE+LAIA+GL+++ P  PIRI+KNLR+C DCHT 
Sbjct: 716 GYAPDTNEVSLDIDEEE-KETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTA 774

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AKLISK Y REI++RDR+RFH+F+ G CSCMDYW
Sbjct: 775 AKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 255/518 (49%), Gaps = 74/518 (14%)

Query: 9   METLSTPVISLPRHP---NPT-TLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRT 64
           +  LS+ + S   H     PT TL++   H H+          C N+KQ  +I +QM+ T
Sbjct: 18  LNQLSSALKSTFNHKPTFKPTITLSILETHLHN----------CHNLKQFNRILSQMILT 67

Query: 65  GLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
           G   D ++AS+L        F  L+Y+ ++FD+I   N + WNT++RAY  S    ++ +
Sbjct: 68  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 127

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           ++  +V N+   P+ +T+P V++A A RL++F  G+ IH  V+K  F+ D+++ N+LI+ 
Sbjct: 128 LYKLMVKNN-VGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINM 185

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           YA+CG++  A  +F      D VSWNS+++G+V+ G  E+A  ++ +M   N+     +M
Sbjct: 186 YAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN-SM 244

Query: 244 VAVLSACAK------------KRDL----------EFGRWPNEALSIFHELQLSKNVNPD 281
           + +L    +            ++D+          E      EAL +F E+  +  +  D
Sbjct: 245 IVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN-ANGMRLD 303

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT------------- 328
           E   VSVLSACA L  +  G  IH  + + GI+    L  +LI MY+             
Sbjct: 304 EVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFN 363

Query: 329 ------------------KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
                             KCG+++KA  +F  +  +D+  WS +I+G+A + C  E L L
Sbjct: 364 GSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLAL 423

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F  MQ  +++P+     +V+ AC+H   +D+G+     +    G+   V   T ++DM  
Sbjct: 424 FHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRK-NGLKVNVILGTTLLDMYM 482

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           + G ++ A+E    M    G S W AL+    ++  VE
Sbjct: 483 KCGCVENALEVFNGME-EKGVSSWNALIIGLAVNGLVE 519


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 384/656 (58%), Gaps = 55/656 (8%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           ++++Q+H   L+T +F  P+ +S+L    +    + L YAR +FD+I + +L  WNT+I+
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y  +       ++F +LV+   Y P+ FT P VIK  ARL   + G+ IHG+ +K  F 
Sbjct: 87  CYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D+F+  SL++ Y+ CG++  A  VF  +  KDVV WNS+I G+ + G  + A++L+ EM
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLE--FGRWP--------------------NEALSIF 269
             E        +V  LS C K       F + P                    + AL +F
Sbjct: 205 P-ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 270 HEL------------------------------QLSKNVNPDEFTFVSVLSACAQLGAMD 299
           +++                               L     P   T VSVLSA + L  + 
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G  IH+ M+K G +L+  L TSLI+MY KCG ++ AL VF  ++ + V  W+ +I G  
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLG 383

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           ++G    AL LF  M +  +KPNA+ F  VL AC+H+GLVD+GR +F+ M   Y + P +
Sbjct: 384 IHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTL 443

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY C+VD+L RAG L+EA   IE MPI P   +W +LLG  + H  +++ EYA   ++E
Sbjct: 444 EHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE 503

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           + PE  G  +LLSN+YA +G W+ VS +R+ M   G +K+PGCSS+E  G +H+F+ G+ 
Sbjct: 504 VAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDI 563

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SHP  KEIY+K+ E+  +LK  G+VP+ + +L  +E E  +E  L  HSERLAIA+GLI+
Sbjct: 564 SHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLIN 623

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           V+P  PIRI+KNLRVC DCH+V KL+SK+Y+REI++RD  RFHHF+ G+CSCMDYW
Sbjct: 624 VKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/580 (43%), Positives = 372/580 (64%), Gaps = 18/580 (3%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           +F+ C L     ++ AR++FD      + TWN ++  Y+   +  +S M+F+++      
Sbjct: 151 MFSLCRL-----VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM-EKRGV 204

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            PN  T   ++ A ++L     G+ I+  +     E +L + N LI  +A CG++  A  
Sbjct: 205 SPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQS 264

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  +  +DV+SW S+++GF   G     I+L R+   +  + D V+  A++        
Sbjct: 265 VFDNMKNRDVISWTSIVTGFANIG----QIDLARKYFDQIPERDYVSWTAMIDGY----- 315

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
           L   R+  EAL++F E+Q+S NV PDEFT VS+L+ACA LGA+++G  +   + K  IK 
Sbjct: 316 LRMNRFI-EALALFREMQMS-NVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN 373

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + ++  +LIDMY KCGN+ KA +VF  +  +D F W+ MI G A+ G G EAL +FS M 
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           EA + P+ +T+  VLCAC+H+G+V++G+ FF  M   +G+ P V HY CMVD+LGRAG L
Sbjct: 434 EASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRL 493

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           +EA E I  MP+ P + VWG+LLGAC++H+NV+LAE A   +LELEPEN    VLL NIY
Sbjct: 494 EEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIY 553

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A   +W+N+ ++RK M   G+KK PGCS +E+NG +++F+AG+ SHP  KEIY+KL+ ++
Sbjct: 554 AACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMM 613

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
             L   GY P+ S +   + EED +E AL  HSE+LAIAY LIS  P   IRIVKNLR+C
Sbjct: 614 QDLIKAGYSPDTSEVFLDLGEED-KETALYRHSEKLAIAYALISSGPGITIRIVKNLRMC 672

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH +AKL+S+ YNRE+++RD+ RFHHFR G+CSC ++W
Sbjct: 673 VDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 230/443 (51%), Gaps = 26/443 (5%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+++CK++ QLKQIH+  ++ GL  DP    ++   C       + YAR++FD IPQP 
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPT 71

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           L+ WNT+I+ YS    P     ++L L+  S   P+ FTFPF++K   R +  + G+ + 
Sbjct: 72  LFIWNTMIKGYSRINHPQNGVSMYL-LMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              +K  F+ +LF+  + IH +++C  + +A  VF M    +VV+WN M+SG+ +   F+
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS--IFHELQLSKNVNP 280
           K+  L+ EME   V P+ VT+V +LSAC+K +DLE G+   + ++  I     + +NV  
Sbjct: 191 KSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLI 250

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D F      +AC   G MD    +   MK + +       TS++  +   G +D A + F
Sbjct: 251 DMF------AAC---GEMDEAQSVFDNMKNRDV----ISWTSIVTGFANIGQIDLARKYF 297

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  RD   W+ MI G+       EAL LF  MQ + VKP+  T  ++L AC+H G ++
Sbjct: 298 DQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALE 357

Query: 401 EGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
            G     +    Y     +K+ T     ++DM  + G + +A +  ++M        W A
Sbjct: 358 LG-----EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTA 411

Query: 457 LLGACKIHENVELAEYACSHLLE 479
           ++    I+ + E A    S+++E
Sbjct: 412 MIVGLAINGHGEEALAMFSNMIE 434


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 377/614 (61%), Gaps = 44/614 (7%)

Query: 43  SLIKQCKNIK-QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           SL++ C + + +LKQIH   +R G+       +K      +   + + +A ++F+QI  P
Sbjct: 39  SLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAP 98

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           N++TWNT+IR ++ S  P  +  +F Q+   S   P+  TFPF+ KA A+L+   +G+ I
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H +V+++ F+   F+ NSL+H Y++ G L  AY VF ++  +D V+WNS+I+GF   G  
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGM- 217

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
                                                   PNEAL+++ E+  S+ V PD
Sbjct: 218 ----------------------------------------PNEALTLYREMG-SEGVEPD 236

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
            FT VS+LSAC +LGA+ +G ++H  M K G+  N + + +L+D+Y+KCGN   A +VF 
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ R V  W+++I G A+ G G EAL LF  ++   +KP+ +TF  VL ACSH G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G  +F +M+  YG++P ++H+ CMVD+L RAG + +A ++I  MP+ P A +W  LLGAC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
            IH ++EL E A + +  LE  + G  VLLSN+YA   +W +V  +RK M + G+KK PG
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S +E+   +++F+ G+ SHP  +E Y+ L +I   LK  GYVP   ++L  +EEE+ +E
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEE-KE 535

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            AL+ H+E++AIA+ L++  P  PIRI+KNLRVC DCH   KLISK++ REI++RDR RF
Sbjct: 536 TALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRF 595

Query: 642 HHFRGGNCSCMDYW 655
           HHF+ G+CSC DYW
Sbjct: 596 HHFKDGSCSCKDYW 609


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/665 (40%), Positives = 388/665 (58%), Gaps = 65/665 (9%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           + QLKQIH QMLRTGLFFDP++ASK+   C+L    SL+YAR +F QIP P  YT N++I
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           R   +     Q  ++F Q +      P+ +TFP + K+     +   G+ IH    K  F
Sbjct: 61  RG-CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGF 116

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY-R 229
             D +  N+L++ Y+ CG L  A  VF  +  K VVSW +MI    Q     +A+ L+ R
Sbjct: 117 ASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDR 176

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLE-------------FGR---WPNEALSIFHE-- 271
            M+ ENVKP+EVT+V VL+ACA+ RDL              FGR        + ++ +  
Sbjct: 177 MMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 272 -LQLSKNV-----NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK----------- 314
            +QL++++       + F++  +++   +    +  + +  +M+ +GIK           
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 315 -------------LNCYLTTSLI-----------DMYTKCGNLDKALEVFHTVKSRDVFV 350
                        L+ Y+    I           DMY KCG+++ A++VFH +  +DV  
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMT 356

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G AM G    AL  F  M    VKP+A+TF  VL ACSH+G VDEG   FN M 
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P ++HY  +VD+LGRAG + EA E I+ MP+ P   V G LLGAC+IH N+E A
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   LLE++P + G  VLLSNIY  + KW+     R+ M   G++K PGCS IEV+G 
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGV 536

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+F+ G+SSH    EI   L++++++LK+ GYVP++S +L  + EE+ +E  L+LHSE+
Sbjct: 537 VHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEE-KETELSLHSEK 595

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+GL+S     PIR+VKNLR+C DCH+  KLISKLYNREI++RDR RFHHF+ G CS
Sbjct: 596 LAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCS 655

Query: 651 CMDYW 655
           C  +W
Sbjct: 656 CRGFW 660


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/610 (40%), Positives = 374/610 (61%), Gaps = 47/610 (7%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSSLEYAREMFDQIPQP-NLYTW 106
           +I +L+QIH   +R G+        K  +F   +L +   + YA ++F +I +P N++ W
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           NTLIR Y+     I +F ++ ++  +    P+  T+PF+IKA   +   R+G+ IH +VI
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +S F   +++ NSL+H YA CGD+A AY VF  + +KD+V+WNS+I+GF + G       
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG------- 201

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
                                              P EAL+++ E+  SK + PD FT V
Sbjct: 202 ----------------------------------KPEEALALYTEMN-SKGIKPDGFTIV 226

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           S+LSACA++GA+ +G ++H  M K G+  N + +  L+D+Y +CG +++A  +F  +  +
Sbjct: 227 SLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +   W+++I G A+ G G+EA++LF  M+  + + P  +TF  +L ACSH G+V EG  +
Sbjct: 287 NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEY 346

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F +M   Y + P ++H+ CMVD+L RAG + +A E+I+ MP+ P   +W  LLGAC +H 
Sbjct: 347 FRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           + +LAE+A   +L+LEP + G  VLLSN+YA   +W +V ++RK M   G+KK PG S +
Sbjct: 407 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV   +H+FL G+ SHP    IY+KL E+  RL+S GYVP  S++   VEEE+ +E A+ 
Sbjct: 467 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE-KENAVV 525

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE++AIA+ LIS     PI +VKNLRVC DCH   KL+SK+YNREI++RDR RFHHF+
Sbjct: 526 YHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFK 585

Query: 646 GGNCSCMDYW 655
            G+CSC DYW
Sbjct: 586 NGSCSCQDYW 595


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/651 (40%), Positives = 386/651 (59%), Gaps = 58/651 (8%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPN 102
           LI     + QL QIH Q+    LF +    ++L +  C+L    SL+YA  +F     PN
Sbjct: 46  LIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSL---KSLDYALSIFRCFDHPN 102

Query: 103 LYTWNTLIRAYSSSAE---PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           L+ +N LIR  + ++     +  F++ L+L       P+  T PFV+K+ A LV   +G+
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR----PDRLTLPFVLKSVAALVDVGLGR 158

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFY---------------------------------AI 186
            +HG V+K   E D F+  SL+  Y                                   
Sbjct: 159 CLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGC 218

Query: 187 C--GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           C  GDL+ A  +F  + +++  SWNS+I+GFV+ G  ++A EL+ +M  +NV    V+  
Sbjct: 219 CKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV----VSWT 274

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
            +++  ++  D E      +ALS+F  + L + V P++ T VS L AC ++GA+ +G +I
Sbjct: 275 TMINGFSQNGDHE------KALSMFWRM-LEEGVRPNDLTVVSALLACTKIGALQVGERI 327

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  +   G +LN  + T+L+DMY KCGN+  A  VF   K +D+  WS MI G+A++GC 
Sbjct: 328 HNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCF 387

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            +AL  F +M+ A + P+ V F  +L ACSHSG VD+G  FF  M   Y + P +KHYT 
Sbjct: 388 DQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTL 447

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           +VD+LGRAG LDEA+ FI+ MPI P   +WGAL  AC+ H+N+E+AE     LL+LEP++
Sbjct: 448 IVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKH 507

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G+ V LSN+YA  G+W++V  +R  M+  G++K+PG S IEV G++H F+AG+ +H   
Sbjct: 508 PGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRA 567

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           +EI  KL+EI A  K  GY+P  + +L  +EEE+ +E AL  HSE+LA+A+GLIS  P  
Sbjct: 568 EEISLKLEEITASAKQEGYMPETAWVLHNIEEEE-KEDALGSHSEKLALAFGLISTAPGS 626

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IRIVKNLRVCGDCH++ K  SKL  REI+LRD  RFHHF+ G CSC DYW
Sbjct: 627 TIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/640 (40%), Positives = 382/640 (59%), Gaps = 35/640 (5%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++ Q  +IK LK +H+++       +P    KL    A      L  AR +FD IP+ N+
Sbjct: 41  VLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGL--ARNVFDVIPERNV 98

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
             +N +IR+Y ++     + ++F  +V +  + P+ +T+P V+KA +     R+G  +HG
Sbjct: 99  IFYNVMIRSYMNNHLYDDALLVFRDMV-SGGFSPDHYTYPCVLKACSCSDNLRIGLQLHG 157

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            V K   + +LF+ N LI  Y  CG L  A CV   +  KDVVSWNSM++G+ Q   F+ 
Sbjct: 158 AVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDD 217

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKR------------DLE---FGRW------- 261
           A+++ REM+    KPD  TM ++L A                 +LE      W       
Sbjct: 218 ALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVY 277

Query: 262 -----PNEALSIFHELQLSK-NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                P +++ ++  LQ+ K  V PD  T  SVL AC  L A+ +G +IH  ++++ +  
Sbjct: 278 MKNSMPGKSVDLY--LQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCP 335

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N  L  SLIDMY +CG L+ A  VF  +K RDV  W+++I+ + M G G  A+ LF+ MQ
Sbjct: 336 NMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQ 395

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            +   P+++ F  +L ACSHSGL++EG+ +F QM   Y + P ++H+ C+VD+LGR+G +
Sbjct: 396 NSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRV 455

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           DEA   I++MP+ P   VWGALL +C+++ N+++   A   LL+L PE  G  VLLSNIY
Sbjct: 456 DEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIY 515

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           AK G+W  V+ +R  M+   ++K PG S++E+N ++H FLAG++ HP  KEIY +L  +V
Sbjct: 516 AKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLV 575

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            ++K  GYVP     L  VEEED +E  L +HSE+LAI + +++ + S PIRI KNLRVC
Sbjct: 576 GKMKELGYVPKTDSALHDVEEED-KECHLAVHSEKLAIVFAILNTQES-PIRITKNLRVC 633

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCH  AKLISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 634 GDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/640 (40%), Positives = 390/640 (60%), Gaps = 34/640 (5%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++ Q  +I  LK++H ++L    L ++P    KL    A      L  AR +FD+I   N
Sbjct: 27  ILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGL--ARHIFDEITDKN 84

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +  +N +IR+Y ++     + +++ + +Y   + P+ +T+P V+KA++R     VG  IH
Sbjct: 85  VVFFNVMIRSYVNNHLYKDALLVY-KTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIH 143

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           G V+K   + +L++ N LI  Y  C  L  A  V   I  +DVVSWNSM+S + Q G F 
Sbjct: 144 GAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFN 203

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACA----------KKRDLEFGR-----W------ 261
            A+EL REME  N+KP++ TM ++L A            K+  L+  +     W      
Sbjct: 204 DALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAM 263

Query: 262 ------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                 P EA+ ++ +++ +  V PD  + VSVL A   L A+ +G ++H   +++ +  
Sbjct: 264 YVNNSMPKEAVVLYSQME-ANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLP 322

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N  L  +LIDMY KCG L  A  VF+ ++ RDV  W+++I+ +   G GR+A+ +F+ M+
Sbjct: 323 NLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMR 382

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            + + P+++ F +VL ACSH+GL+D+GR +FN M    G+ P ++H+ C+VD+LGRAG +
Sbjct: 383 NSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKI 441

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           DEA  FI +MP+ P   VWG LL AC+++ N+ +   A   LL L PE+ G  VLLSNIY
Sbjct: 442 DEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIY 501

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           AK G+W +V+ +R  M   G+KK PG S++E+N  +H FLAG+ SHP  K+IY +LD +V
Sbjct: 502 AKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLV 561

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            ++K  GY+P     L  VEEED +E  L +HSE+LA+A+ +I+ +P  PIR+ KNLRVC
Sbjct: 562 GKMKELGYMPETDSALHDVEEED-KEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVC 620

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCH  AKLISK+  REI++RD +RFHHF+ G CSC DYW
Sbjct: 621 GDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/627 (40%), Positives = 380/627 (60%), Gaps = 49/627 (7%)

Query: 32  NGHQHHPHPVFSLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           NG + +   + S++  C ++   +Q KQIH   +R+G+  D    + L    A     ++
Sbjct: 215 NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYA--KCGNV 272

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
             A ++F+++P  ++ +WN +I  YS +++  ++   F ++       PN  T   V+ A
Sbjct: 273 NTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG-IKPNSITMVSVLPA 331

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A L     GQ IHG  I+S FE +  + N+L++ YA CG++  AY +F  + KK+VV+W
Sbjct: 332 CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAW 391

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N++ISG+ Q G                                          P+EAL++
Sbjct: 392 NAIISGYSQHGH-----------------------------------------PHEALAL 410

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           F E+Q ++ + PD F  VSVL ACA   A++ G QIH    + G + N  + T L+D+Y 
Sbjct: 411 FIEMQ-AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYA 469

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCGN++ A ++F  +  +DV  W+TMI  + ++G G +AL LFS+MQE   K + + FT 
Sbjct: 470 KCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTA 529

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           +L ACSH+GLVD+G  +F  M+  YG+ P ++HY C+VD+LGRAG LDEA   I+ M + 
Sbjct: 530 ILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLE 589

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A+VWGALLGAC+IH N+EL E A  HL EL+P+N G  VLLSNIYA+  +W++V++LR
Sbjct: 590 PDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLR 649

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K M+  G+KK+PGCS + V+ ++  FL G+ +HP  ++IY+ L+ +  +++  GYVPN +
Sbjct: 650 KMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTN 709

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
             LQ VEEE  +E  L+ HSE+LAI++G+I+  P  PIRI+KNLRVC DCH   K ISK+
Sbjct: 710 LALQDVEEE-AKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKI 768

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             REI++RD  RFHH + G CSC DYW
Sbjct: 769 VGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 197/450 (43%), Gaps = 89/450 (19%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           N   W   I  Y  +    ++  ++ Q+   +   P++  F  VIKA       + G+ +
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQM-QRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  +I   FE D+ +  +L   Y  CG L  A  VF  + K+DVVSWN++I+G+ Q G  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            +A+ L+ EM++  +KP+  T+V+V+  C                               
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVC------------------------------- 231

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
                      A L A++ G QIH    + GI+ +  +   L++MY KCGN++ A ++F 
Sbjct: 232 -----------AHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFE 280

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +  RDV  W+ +I G+++     EAL  F+RMQ   +KPN++T  +VL AC+H   +++
Sbjct: 281 RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 402 GRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           G+         Y +  G +        +V+M  + G ++ A +  E+MP       W A+
Sbjct: 341 GQQIHG-----YAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAI 394

Query: 458 LGACKIHEN--------VELAEY--------------ACSHLLELE--PENHGALVL--- 490
           +     H +        +E+                 AC+H L LE   + HG  +    
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF 454

Query: 491 ---------LSNIYAKTGKWDNVSELRKHM 511
                    L +IYAK G  +   +L + M
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERM 484



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 192/423 (45%), Gaps = 78/423 (18%)

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
           G W N+AL +++++Q +  +NPD+  F+SV+ AC     +  G ++H  +  +G + +  
Sbjct: 99  GFW-NKALRLYYQMQRT-GINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVI 156

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           + T+L  MYTKCG+L+ A +VF  +  RDV  W+ +IAG++  G   EAL LFS MQ   
Sbjct: 157 VGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNG 216

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----YTCMVDMLGRAGL 434
           +KPN+ T  +V+  C+H   +++G+         Y +  G++        +V+M  + G 
Sbjct: 217 IKPNSSTLVSVMPVCAHLLALEQGKQIH-----CYAIRSGIESDVLVVNGLVNMYAKCGN 271

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEY------------------ 472
           ++ A +  E+MPI   AS W A++G   +    HE +                       
Sbjct: 272 VNTAHKLFERMPIRDVAS-WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLP 330

Query: 473 ACSHLLELE--PENHGALV------------LLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           AC+HL  LE   + HG  +             L N+YAK G  ++  +L + M       
Sbjct: 331 ACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM------- 383

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA---RLKSFGYV---PNRSHLLQ 572
            P  + +  N      ++G S H    E  +   E+ A   +  SF  V   P  +H L 
Sbjct: 384 -PKKNVVAWNA----IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA 438

Query: 573 LVEEEDVQEQALNLHSE-RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
           L + + +    +    E  + +  GL+ +              CG+ +T  KL  ++  +
Sbjct: 439 LEQGKQIHGYTIRSGFESNVVVGTGLVDIYAK-----------CGNVNTAQKLFERMPEQ 487

Query: 632 EIL 634
           +++
Sbjct: 488 DVV 490


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/695 (37%), Positives = 397/695 (57%), Gaps = 70/695 (10%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +  ++    Q   +P   +++QCK  K L+Q+H  +L+T    DP     +    AL
Sbjct: 9   PNISLTSIT---QFPENPKSLILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAAL 65

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
               +++YA  +F+ I +P    +N +IR  +    P  + ++F ++ +      ++FTF
Sbjct: 66  LLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM-HEKSVQHDKFTF 124

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
             V+KA +R+   R G+ +H +++KS F+ + F+ N+LI  YA CG + +A  VF  + +
Sbjct: 125 SSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPE 184

Query: 203 KDVVSWNSMISGFVQGGF-------FEKAIELYREME-------------MENVKPDEV- 241
           + +V+WNSM+SG+ + G        F K +EL  E +             + N++  E+ 
Sbjct: 185 RSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELI 244

Query: 242 -----------------TMVAVLSACAK------------KRDLEFGRWP---------- 262
                            +++ + + C +            KRD+    W           
Sbjct: 245 GEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVV--AWSAMISGYAQAD 302

Query: 263 --NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
              EAL++FHE+Q   NV P+E T VSVL +CA LGA + G  +H  +KK+ +KL   L 
Sbjct: 303 RCKEALNLFHEMQ-KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T LID Y KCG +D+++EVF  +  ++VF W+ +I G A  G G+ AL+ FS M E  VK
Sbjct: 362 TQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN VTF  VL ACSH+ LVD+GR  FN M   + + P ++HY CMVD+LGRAG L+EA +
Sbjct: 422 PNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQ 481

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           FI+ MP  P A VW  LL +C+ H+N+E+AE +  H+  LEP + G  +LLSN YA  G+
Sbjct: 482 FIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGR 541

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
            ++   +R  ++   +KK PGCS IE++G +H+F + +  H   KEI+  LD+++ ++K 
Sbjct: 542 VEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKR 601

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            GYVPN     +L  EE+ +E +++ HSE+LAIAYGLI   P   IRI KNLR+C DCH 
Sbjct: 602 LGYVPNTDD-ARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHN 660

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K IS+++ R I++RDR RFHHF+ G CSC DYW
Sbjct: 661 ATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/614 (39%), Positives = 376/614 (61%), Gaps = 44/614 (7%)

Query: 43  SLIKQCKNIK-QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           SL++ C + + +LKQIH   +R G+       +K      +   + + +A ++F+QI  P
Sbjct: 39  SLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAP 98

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           N++TWNT+IR ++ S  P  +  +F Q+   S   P+  TFPF+ KA A+L+   +G+ I
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H +V+++ F+   F+ NSL+H Y++ G    AY VF ++  +D V+WNS+I+GF   G  
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGM- 217

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
                                                   PNEAL+++ E+  S+ V PD
Sbjct: 218 ----------------------------------------PNEALTLYREMG-SEGVEPD 236

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
            FT VS+LSAC +LGA+ +G ++H  M K G+  N + + +L+D+Y+KCGN   A +VF 
Sbjct: 237 GFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFD 296

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ R V  W+++I G A+ G G EAL LF  ++   +KP+ +TF  VL ACSH G++DE
Sbjct: 297 EMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDE 356

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G  +F +M+  YG++P ++H+ CMVD+L RAG + +A ++I  MP+ P A +W  LLGAC
Sbjct: 357 GFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGAC 416

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
            IH ++EL E A + +  LE  + G  VLLSN+YA   +W +V  +RK M + G+KK PG
Sbjct: 417 TIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPG 476

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S +E+   +++F+ G+ SHP  +E Y+ L +I   LK  GYVP   ++L  +EEE+ +E
Sbjct: 477 YSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEE-KE 535

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            AL+ H+E++AIA+ L++  P  PIRI+KNLRVC DCH   KLISK++ REI++RDR RF
Sbjct: 536 TALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRF 595

Query: 642 HHFRGGNCSCMDYW 655
           HHF+ G+CSC DYW
Sbjct: 596 HHFKDGSCSCKDYW 609


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/645 (40%), Positives = 393/645 (60%), Gaps = 33/645 (5%)

Query: 28  LTVNNGHQ--HHPHP-VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK-----LFTP 79
           L VN G +  H   P VF    + KN +  K ++  ML  G  F+  S  K     +F  
Sbjct: 101 LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIG--FEGNSCVKGSILDMFIK 158

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C       ++ AR  F++I   +++ WN ++  Y+S  E  ++  +F ++V      PN 
Sbjct: 159 CG-----RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVK-PNS 212

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
            T    + A   L   R G+ IHG  IK    + DL + NSL+ +YA C  + +A   F 
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 272

Query: 199 MIGKKDVVSWNSM--ISGFVQGGFFEKAIELYREMEM------ENVKPDEVTMVAVLSAC 250
           MI + D+VSWN+M  ++GF Q G  + A+E ++ M +      E    D V   +++SAC
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           A+      GR  N AL +  E+ LS NV  +  T VS L AC++L A+  G +IH  + +
Sbjct: 333 AQS-----GRSVN-ALDLLREMNLS-NVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR 385

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            G+    ++  SLIDMY +CG++ K+  +F  +  RD+  W+ MI+ + M+G G +A++L
Sbjct: 386 CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNL 445

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F + +   +KPN +TFTN+L ACSHSGL++EG  +F  M+  Y + P V+ Y CMVD+L 
Sbjct: 446 FQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLS 505

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG  +E +EFIEKMP  P A+VWG+LLGAC+IH N +LAEYA  +L ELEP++ G  VL
Sbjct: 506 RAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVL 565

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           ++NIY+  G+W++ +++R  M+  G+ K PGCS IEV  ++H F+ G++SHPL ++I +K
Sbjct: 566 MANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAK 625

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           ++ +   +K  GYVP+ + +LQ V +ED +E +L  HSE++A+A+GLIS     P+RI+K
Sbjct: 626 MESLYFDIKEIGYVPDTNFVLQDV-DEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIK 684

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLRVCGDCH+  K ISK+  R+I++RD YRFHHF  G CSC DYW
Sbjct: 685 NLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 212/443 (47%), Gaps = 42/443 (9%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLF-TPCALGTFSSLEYAREMFDQI 98
           S++++C+ +  L+   Q+H Q++  G+    +  S+L    C  G    +E AR MFD++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC---VEDARRMFDKM 71

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            + N+++W  ++  Y    +  ++  +F  +V N    P+ F FP V KA + L  +RVG
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMV-NEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + ++  ++   FE +  +  S++  +  CG + +A   F  I  KDV  WN M+SG+   
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G F+KA+ ++R+M +E VKP+ +T+ + +SAC     L  GR  +       EL      
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL------ 244

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCGNLDKAL 337
           + D     S++   A+  ++++  +    +K+   +  N  L    +  +T+ G+   AL
Sbjct: 245 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA---VTGFTQYGDGKAAL 301

Query: 338 E----------VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           E          VF  + +RDV VW+++I+  A  G    ALDL   M  + V+ N VT  
Sbjct: 302 EFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMV 361

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC------MVDMLGRAGLLDEAVEF 441
           + L ACS    + +G+        ++  +      TC      ++DM GR G + ++   
Sbjct: 362 SALPACSKLAALRQGK-------EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRI 414

Query: 442 IEKMPIVPGASVWGALLGACKIH 464
            + MP     S W  ++    +H
Sbjct: 415 FDLMPQRDLVS-WNVMISVYGMH 436



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 278 VNPDEFT--FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            NPDE    + S+L  C +L  + +G Q+HA++   G+ +  +L + L+++Y + G ++ 
Sbjct: 4   TNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 63

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F  +  R+VF W+ ++  +   G   E + LF  M    V+P+   F  V  ACS 
Sbjct: 64  ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 123

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEAVEFIEKM 445
                 G+  ++ M  +     G +  +C    ++DM  + G +D A  F E++
Sbjct: 124 LKNYRVGKDVYDYMLSI-----GFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 172


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/641 (39%), Positives = 383/641 (59%), Gaps = 77/641 (12%)

Query: 43  SLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++K C  I   +  K+IH   ++ GL  D +  + L   ++ C      SL  AR +FD
Sbjct: 114 SVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECG-----SLVSARLLFD 168

Query: 97  QIPQPNLYTWNTLIRAYSS-----SAEPIQSFM-----------------IFLQLVYNSP 134
           ++ + ++ +W+T+IRAY +     S   I S+                  +F++++  + 
Sbjct: 169 KMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN- 227

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            FPN+ T   +I +   +   ++G+ +H  ++++ F   L ++ +L+  Y  CG++  A 
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            +F  +  KDV++W +MIS + Q    + A +L+ +M                      R
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQM----------------------R 325

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
           D                      V P+E T VS+LS CA  GA+D+G   HA + KQG++
Sbjct: 326 D--------------------NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVE 365

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
           ++  L T+LIDMY KCG++  A  +F     RD+  W+ M+AG+ M+G G +AL LF+ M
Sbjct: 366 VDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +   VKPN +TF   L ACSH+GLV EG+  F +M   +G+VP V+HY CMVD+LGRAGL
Sbjct: 426 ETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGL 485

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA + IE MP+ P  ++WGA+L ACKIH+N  + E A   LL LEP+N G  VL+SNI
Sbjct: 486 LDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNI 545

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA   +W++V+ +RK ++ +G+KKEPG SSIEVNG +H F  G+++HPL ++I   L E+
Sbjct: 546 YAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEM 605

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             +LK  GY+P+ S +L  ++EE+ +E ALN HSE+LA+A+GLIS  P  PIR+VKNLR+
Sbjct: 606 SKKLKEAGYLPDTSVVLHNIDEEE-KETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRI 664

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCHTV KL+SK+Y R I++RDR RFHHFR G+CSC  YW
Sbjct: 665 CDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 217/448 (48%), Gaps = 73/448 (16%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQ-CKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           P++P+P      + ++H  HP F+     C  + Q +Q+H  + RT      ++    F+
Sbjct: 35  PQNPSP-----QHQNKHQKHPSFTPNNHLC--LDQTQQLHAHITRTHF---NHAQQVSFS 84

Query: 79  PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN 138
           P               F+  P+  L T+               ++M  L +  +S     
Sbjct: 85  P---------------FESHPRYALNTY---------------TYMRKLDIEVDS----- 109

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
            F  P V+KA +++   R+G+ IHG  +K+    D+F+ N+L+  Y+ CG L  A  +F 
Sbjct: 110 -FIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFD 168

Query: 199 MIGKKDVVSWNSMISGFVQ--GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            + ++DVVSW++MI  ++    GF +++I               V+  A+++   +  DL
Sbjct: 169 KMSERDVVSWSTMIRAYITLFYGFSQRSI---------------VSWTAMIAGYIRCNDL 213

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           E G        +F  + + +NV P++ T +S++ +C  +GA+ +G ++HA + + G  ++
Sbjct: 214 EEGE------RLFVRM-IEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMS 266

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+L+DMY KCG +  A  +F ++K++DV  W+ MI+ +A   C   A  LF +M++
Sbjct: 267 LALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRD 326

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             V+PN +T  ++L  C+ +G +D G+ F   ++   GV   V   T ++DM  + G + 
Sbjct: 327 NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDK-QGVEVDVILKTALIDMYAKCGDIS 385

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIH 464
            A     +  I      W  ++    +H
Sbjct: 386 GAQRLFSE-AIDRDICTWNVMMAGYGMH 412


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/609 (41%), Positives = 381/609 (62%), Gaps = 17/609 (2%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP-NLYTWNTL 109
           +KQ K+ HTQ++  GL   P S   + +  AL     ++YA  +  +   P  ++ +NT 
Sbjct: 1   MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTT 60

Query: 110 IRAYSSSAEP---IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           IR +S +  P   + S ++F+++   S   PN FTF F+ +  +  V F +G+  HGMVI
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLS-LAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVI 119

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K+SFE D+F+ NS+I FY++CG L  A  VF    + DVVSWNSMI G ++ G   +A+ 
Sbjct: 120 KNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALS 179

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ +M   N    +++   ++S  A+         P EAL++F E+Q+  +  P+    V
Sbjct: 180 LFSKMTERN----DISWNMMISGYAQNGQ------PKEALALFREMQM-LDQEPNSAILV 228

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           SVLSAC+QLGA+D G  +H  + K+ ++++  L+ +LIDMY KCG++D A++ F T + R
Sbjct: 229 SVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKR 288

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           DV  ++  I+G AM GC  EAL LF +M+   + P+ V++  VLCACSH+G V++G  +F
Sbjct: 289 DVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYF 348

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M  V+G+ P + HY CMVD+LGRAGLL+EA +F+  MPI P   +WGALLGAC+++ N
Sbjct: 349 ASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGN 408

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
            E+ +   S L+E +  + G  +LLSNIYA++ K ++  ++RK MR   + + PGCS IE
Sbjct: 409 AEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIE 468

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           V G +H+F +G+ SH   +EIY   +EIV  +K FGY      ++  VEEE+ +E  +  
Sbjct: 469 VAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEE-KEAVIGH 527

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LA+A+G +  +    +RIVKN+R+C DCH   KL+SK++ R+I +RDR  FHHF  
Sbjct: 528 HSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEE 587

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 588 GLCSCKDYW 596


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/630 (41%), Positives = 380/630 (60%), Gaps = 36/630 (5%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H  ++  G     + +++L    A      +  +R  FDQIPQ ++Y WN++I AY 
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    ++   F QL+  S   P+ +TFP V+KA   LV    G+ IH    K  F+ ++
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 150

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F++ SLIH Y+  G   +A  +F  +  +D+ SWN+MISG +Q G   +A+++  EM +E
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 235 NVKPDEVTMVAVL----SACAKKRDLEFGR-------------W------------PNEA 265
            +K + VT+V++L       AK   L+                W             +EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + ++  ++  K + P++ T+VS+L A A +GA+  G++IH ++ K  + L+ ++ T LID
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           +Y KCG L  A+ +F+ V       W+ +I+   ++G   + L LF  M +  VKP+ VT
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F ++L ACSHSG V+EG+  F  M+  YG+ P +KHY CMVD+LGRAG L+ A +FI+ M
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 449

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+ P AS+WGALLGAC+IH N+EL ++A   L E++ +N G  VLLSNIYA  GKW+ V 
Sbjct: 450 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 509

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R   R  GLKK PG S+IEVN ++  F  G  SHP CKEIY +L  + A++KS GY+P
Sbjct: 510 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 569

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S +LQ V EED +E  L  HSERLAIA+G+IS  P  PIRI KNLRVCGDCH   K I
Sbjct: 570 DYSFVLQDV-EEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFI 628

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S++  REI++RD  RFHHF+ G CSC DYW
Sbjct: 629 SRITQREIVVRDSNRFHHFKDGICSCGDYW 658


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/641 (39%), Positives = 386/641 (60%), Gaps = 35/641 (5%)

Query: 44  LIKQCKNIKQLKQIHTQM-LRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++ Q   IK L ++H+++ +   L  DP  A KL    A         AR +FD+  + N
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKN 101

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +  +N +IR+Y ++   +++  IF Q++ +  + P+ +TFP V+KA + L   RVG  +H
Sbjct: 102 VVFFNVMIRSYVNNNLYVEALSIF-QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH 160

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             ++K   + +LFI N+L+  Y  CG L  A  V   +  +DVVSWNSM++G+ Q G F+
Sbjct: 161 DAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFD 220

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE--------FGR--------W----- 261
            A+E+ +EM+  N+  D  TM A LS       LE        F R        W     
Sbjct: 221 DALEICKEMDSLNLNHDAGTM-ASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIA 279

Query: 262 -------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                  PNEA+S+F +++    + PD  T  S+L AC  L A+ +G ++H  ++K  ++
Sbjct: 280 IYVNNSMPNEAVSLFLQME-ECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLR 338

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            N  L  +L+DMY KCG L++A +VF  ++ RDV  W++M++ +   G G +A+ LF++M
Sbjct: 339 PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKM 398

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
            ++   P+++ F +VL ACSH+GL+D+GR +F  M   YG+VP ++H+ CMVD+ GRAG 
Sbjct: 399 LDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGE 458

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           ++EA  FI++MP+ P   VWGALL AC++H  +++   A   L +L P+  G  VLLSNI
Sbjct: 459 VEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNI 518

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YAK G W +V  +R  M+  G+KK PG S++E+NG++H FLAG+  HP  K IY +LD +
Sbjct: 519 YAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVL 578

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           V ++K  GY+P     L  VE ED +E  L +HSE+LAI + +++ +   PIRI KNLRV
Sbjct: 579 VGKMKELGYIPQTESALHDVEVED-KECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRV 637

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCH   KLISK+ +R I++RD  RFHHF  G CSC DYW
Sbjct: 638 CGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/666 (38%), Positives = 389/666 (58%), Gaps = 64/666 (9%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTL 109
           + L Q+H  ++++G               A  + + L YA  +F   P+P L T  +N L
Sbjct: 30  RYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +RA   +  P  +  +F++++  +   P++ T    +K+ +R+    VG+ I    +K  
Sbjct: 90  MRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRG 149

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              D F+ +SLIH YA C D+A A  +F  + +  VV WN++I+ +++ G + + +E+++
Sbjct: 150 LMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFK 209

Query: 230 EMEMENVKPDEVT-----------------------------------MVAVLSACAKKR 254
            M    V  DE+T                                   M A++   AK  
Sbjct: 210 GMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCG 269

Query: 255 DLEFGR-------------WP------------NEALSIFHELQLSKNVNPDEFTFVSVL 289
           +L   R             W              EAL++F E+QL++ V P++ T VSVL
Sbjct: 270 ELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAE-VEPNDVTMVSVL 328

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
           SACA LGA++ G  +H+ ++++ + L   L T+L+D Y KCG +D A+E F ++  ++ +
Sbjct: 329 SACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 388

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+ +I G A  G GREAL+LFS M++A ++P  VTF  VL ACSHS LV+EGR  F+ M
Sbjct: 389 TWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSM 448

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
              YG+ P  +HY C+VD+LGRAGL+DEA +FI  MPI P A +W ALL +C +H+NVE+
Sbjct: 449 TQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEI 508

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            E A   ++ L P + G  +LLSNIYA  G+W N + +RK M+  G++K PGCS IE++G
Sbjct: 509 GEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDG 568

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
            + +F A +S HP  KEIY K++E++ R+K  GY+PN + +   V+E + +E +++ HSE
Sbjct: 569 VVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHE-KEVSVSHHSE 627

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LAIA+GL+ ++P   IR+ KNLRVC DCH+  KLISK+YNREI++RDR RFHHF+ G C
Sbjct: 628 KLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTC 687

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 688 SCNDYW 693


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/654 (38%), Positives = 386/654 (59%), Gaps = 54/654 (8%)

Query: 4   NPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLR 63
           NP  +   L T  ++  +HP    +T N   Q H     +L++    ++ L+Q+H  ++ 
Sbjct: 62  NPTMNKIKLQTQQLAF-QHP----VTRNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIV 116

Query: 64  TGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
           +GL       +KL +  C  G   S+ YAR +F  +P P+ + +++L++  S     I +
Sbjct: 117 SGLHRSRSLLTKLISLVCTAG---SITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDT 173

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
            + + +++++     N +TF  VIKA A L   R+G+ IH  V+   +  D+++  +LI 
Sbjct: 174 VLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIA 232

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA   D+ +A  VF  + ++ +++WNS+ISG+ Q G                       
Sbjct: 233 LYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL---------------------- 270

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                              P E++ +FH L +     PD  T VS+LS+C+QLGA+D G 
Sbjct: 271 -------------------PQESIGLFH-LMMESGFQPDSATIVSLLSSCSQLGALDFGC 310

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            +H      G  LN  L TSLI+MYT+CGN+ KA EVF ++K R+V  W+ MI+G+ M+G
Sbjct: 311 WLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHG 370

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            GR+A++LF+ M+    +PN +TF  VL AC+HSGL+D+GR  F+ M+  YG+VPGV+H 
Sbjct: 371 YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHN 430

Query: 423 TCMVDMLGRAGLLDEAVEFIEK-MPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
            CMVDM GRAGLL++A +FI+K +P  PG +VW ++LGAC++H N +L      H+L +E
Sbjct: 431 VCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVE 490

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           PEN G  V+LSNIYA  G+ D V  +R  M    LKK+ G S+IE+N + + F  G+ SH
Sbjct: 491 PENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSH 550

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P    IY  LDE++ R    GYVP    L+  +EEE+ ++ AL  HSE+LA+A+GL+   
Sbjct: 551 PQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEE-RDYALRYHSEKLALAFGLLKTN 609

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             + IRIVKNLR+C DCH+  K IS + +REI++RD++RFHHF+ G+CSC+DYW
Sbjct: 610 QGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/641 (39%), Positives = 386/641 (60%), Gaps = 35/641 (5%)

Query: 44  LIKQCKNIKQLKQIHTQM-LRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++ Q   IK L ++H+++ +   L  DP  A KL    A         AR +FD+  + N
Sbjct: 44  ILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMR--AYSAQGETSVARYIFDRSLEKN 101

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +  +N +IR+Y ++   +++  IF Q++ +  + P+ +TFP V+KA + L   RVG  +H
Sbjct: 102 VVFFNVMIRSYVNNNLYVEALSIF-QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVH 160

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             ++K   + +LFI N+L+  Y  CG L  A  V   +  +DVVSWNSM++G+ Q G F+
Sbjct: 161 DAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFD 220

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE--------FGR--------W----- 261
            A+E+ +EM+  N+  D  TM A LS       LE        F R        W     
Sbjct: 221 DALEICKEMDSLNLNHDAGTM-ASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIA 279

Query: 262 -------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                  PNEA+S+F +++    + PD  T  S+L AC  L A+ +G ++H  ++K  ++
Sbjct: 280 IYVNNSMPNEAVSLFLQME-ECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQ 338

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            N  L  +L+DMY KCG L++A +VF  ++ RDV  W++M++ +   G G +A+ LF++M
Sbjct: 339 PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKM 398

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
            ++   P+++ F +VL ACSH+GL+D+GR +F  M   YG+VP ++H+ CMVD+ GRAG 
Sbjct: 399 LDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGE 458

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           ++EA  FI++MP+ P   VWGALL AC++H  +++   A   L +L P+  G  VLLSNI
Sbjct: 459 VEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNI 518

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YAK G W +V  +R  M+  G+KK PG S++E+NG++H FLAG+  HP  K IY +LD +
Sbjct: 519 YAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVL 578

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           V ++K  GY+P     L  VE ED +E  L +HSE+LAI + +++ +   PIRI KNLRV
Sbjct: 579 VGKMKELGYIPQTESALHDVEVED-KECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRV 637

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCH   KLISK+ +R I++RD  RFHHF  G CSC DYW
Sbjct: 638 CGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/650 (41%), Positives = 389/650 (59%), Gaps = 32/650 (4%)

Query: 15  PVISLPRHPNPTTLTVNNGHQHHPHP-VFSLI-KQCKNIKQLKQIHTQMLRTGLFFDPYS 72
           P IS+P +P P  L         P+P  FSL+  Q   +  L+QIH Q++   L  +   
Sbjct: 58  PSISIPTNPIPIDL---------PNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASL 108

Query: 73  ASKLFTPCALGTFSSLEYAREMFDQIPQPN--LYTWNTLIRAYS---SSAEPIQSFMIFL 127
            + L   C L    +   AR +FD  P P+  +  WN +IR YS   +S EPI  F+  L
Sbjct: 109 TASLIH-CYLCA-KNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRML 166

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
            L       P+E+TF FVI + +  +    G+ +HGMV+KS FE +L++ NS+I+  ++ 
Sbjct: 167 TLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVF 226

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
             +  A  VF  + ++DV SW S++ G+ + G  ++A EL+  M + N    +V+   ++
Sbjct: 227 ARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRN----DVSWAVMI 282

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
           S       L  GR+P EAL+ F  +     VNP+E   V VLSACA LGA+D G  IH  
Sbjct: 283 SGF-----LGCGRYP-EALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLY 336

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + K GI+ +  ++T+LIDMY KCG +D A  VF+ +  RDV  +++MI+G + +G G++A
Sbjct: 337 IDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDA 396

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L +F +M +  V PN +T   VL  CSHSGLV+EG      ME ++G+ P ++HY C +D
Sbjct: 397 LRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYID 456

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH-G 486
           +LGRAG L+ A+E ++ MP+ P   +W ALL A +IH NV L E   SH+ +L+  +H G
Sbjct: 457 LLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNG 516

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             VLLSN+YA  G+W+ V+E+RK M     +  PGCS IEVNG +H+F   +  HP   E
Sbjct: 517 GEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVE 576

Query: 547 IYSKLDEIVARLKSFGYVPNRSHL-LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP 605
           I +KL+EI+ RL   GY  N   +   L EEE  +EQA+  HSE+LAIA+GL+S EP   
Sbjct: 577 IRNKLNEILKRLSQIGYSANTMQVSFDLNEEE--KEQAVAWHSEKLAIAFGLMSTEPGTL 634

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IRIVKNLR C DCH+  K IS++Y REI++RDR RFH F  G+CSC D+W
Sbjct: 635 IRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/678 (38%), Positives = 392/678 (57%), Gaps = 75/678 (11%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+K C    ++K+ K+IH Q++      + ++ +    ++  C       ++ A +MFD+
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC-----RQIDDAYKMFDR 207

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L +WNT+I  +S +    ++  + L++  +    P+  T   V+ AAA +    V
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMV 266

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G++IHG  I++ F   + IS +L   Y+ CG +  A  +F  + +K VVSWNSM+ G+VQ
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 218 GGFFEKAIELYREMEME-----------------------------------NVKPDEVT 242
            G  EKAI ++ +M  E                                   N+  D   
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 243 MVAVLSACAKKRDLEF---------GR----WP------------NEALSIFHELQLSKN 277
           M +++S  +K + ++          GR    W             +EAL+ F E++ S  
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLG 445

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + PD FT VSV+ A A+L        IH  + +  +  N ++TT+L+DMY+KCG +  A 
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           ++F  +  R V  W+ MI G+  +G GR ALDLF +M++  V+PN +T+ +V+ ACSHSG
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVDEG   F  M+  YG+ P + HY  MVD+LGRAG + EA +FIE MPI PG +V+GA+
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAM 625

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACKIH+N+E+ E A   L EL P+  G  VLL+NIYA T KW  V+E+RK M   GLK
Sbjct: 626 LGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGCS +E+  E+H F +G ++HP  K IY+ L+E+V  +K+ GYVP+ + +L +  E+
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDV--ED 743

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           DVQEQ LN HSE+LAIA+GL++  P   I + KNLRVCGDCH   K IS +  REI++RD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 183/376 (48%), Gaps = 48/376 (12%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + HP   L++ C ++K+L QI   +++ GL+ +    +KL +      + S+  A  +F+
Sbjct: 48  YKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVS--LFSKYGSINEAARVFE 105

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I       ++T+++ Y+ ++  +++ + FL  +      P  + F +++K        +
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSS-LETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLK 164

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG +I +SF  ++F    +++ YA C  +  AY +F  + ++D+VSWN++I+GF 
Sbjct: 165 RGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q GF +KA+EL   M+ E  +PD +T+V VL                             
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVL----------------------------- 255

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                         A A +G + +G  IH    + G      ++T+L DMY+KCG+++ A
Sbjct: 256 -------------PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETA 302

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  + V  W++M+ G+   G   +A+ +F +M E  + P  VT    L AC+  
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 397 GLVDEGRM---FFNQM 409
           G ++ G+    F +Q+
Sbjct: 363 GDLERGKFVHKFVDQL 378



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 51/286 (17%)

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           +VIK+   ++      L+  ++  G +  A  VF  I  K    +++M+ G+ +    E 
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+     M  ++VKP       +L  C    DL+ G+                       
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGK----------------------- 167

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                              +IH ++       N +  T +++MY KC  +D A ++F  +
Sbjct: 168 -------------------EIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RD+  W+T+IAGF+  G  ++AL+L  RMQ+   +P+++T   VL A +  GL+  G+
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268

Query: 404 MFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                    Y +  G    V   T + DM  + G ++ A    + M
Sbjct: 269 SIHG-----YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           K G+       T L+ +++K G++++A  VF  +  +   ++ TM+ G+A       AL 
Sbjct: 74  KNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALA 133

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
              RM+   VKP    FT +L  C  +  +  G+    Q+         V   T +V+M 
Sbjct: 134 FLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL-ITNSFAANVFAMTGVVNMY 192

Query: 430 GRAGLLDEAVEFIEKMP 446
            +   +D+A +  ++MP
Sbjct: 193 AKCRQIDDAYKMFDRMP 209


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/625 (41%), Positives = 382/625 (61%), Gaps = 24/625 (3%)

Query: 39  HPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS--SLEYAREMF 95
           H  F  L+K+  ++ Q+KQIH Q++  GL       + L  P         +L +AR +F
Sbjct: 55  HSTFVQLLKKRPSLTQIKQIHAQVVTHGL----AQNTSLLGPLIHSYIGCRNLSFARIVF 110

Query: 96  DQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQ-LVYNSPYFPNEFTFPFVIKAAARLV 153
           DQ P  P    WN +I+AYS +    +S  +F Q L +  P   +++TF FV  A +R  
Sbjct: 111 DQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHP 170

Query: 154 QFR-VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
             R  G+ +HGMV+K  +E D+F+ NSL++ Y+I   +  A  VF  + ++DV++W S++
Sbjct: 171 TLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVV 230

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+   G   +A EL+  M   N    +V+   +++     R      + NEAL  F+++
Sbjct: 231 KGYAMRGELVRARELFDMMPGRN----DVSWAVMVAGYVGHR------FYNEALQCFNDM 280

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                V P+E   VS+LSACA LGA+D G  IH  + K  I L+  ++T+LIDMY KCG 
Sbjct: 281 LCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGR 340

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +D A  VF  +  RD+  W++MI+G +M+G G E L  FS M     KP+ +T   VL  
Sbjct: 341 IDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNG 400

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSHSGLV+EG   F+ M P++G+VP ++HY C++D+LGRAG L+ A E I+ MP+ P   
Sbjct: 401 CSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVV 460

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENH-GALVLLSNIYAKTGKWDNVSELRKHM 511
            W ALL AC+IH +V+L E   +H+ EL P +H G  VLLSN+YA  G+W++V+++RK M
Sbjct: 461 AWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAM 520

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHL 570
              G +  PGCS IE++G +H+FLA +  HP   EI  KL+E++ R+    GYVP+   +
Sbjct: 521 SQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQV 580

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  + EED +EQA++ HSE+LA+A+GL+S +    IRI KNLR C DCH+  K IS ++N
Sbjct: 581 LFDLNEED-KEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFN 638

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFH FR GNCSC DYW
Sbjct: 639 REIVVRDRSRFHTFRYGNCSCTDYW 663


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/574 (44%), Positives = 359/574 (62%), Gaps = 13/574 (2%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
            G   ++E A ++F+++ Q +L +W+ LI  Y  +    ++ ++F ++  N     +E  
Sbjct: 233 FGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANG-IMVDEVV 291

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A +RL+    G+ +HG+V+K   E  + + N+LIH Y+ C ++  A  +F    
Sbjct: 292 VLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESC 351

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             D +SWNSMISG+V+ G  EKA  L+  M       D V+  A++S  A++        
Sbjct: 352 CLDQISWNSMISGYVKCGEIEKARALFDSMP----DKDNVSWSAMISGYAQQDRF----- 402

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             E L +F E+Q+ +   PDE   VSV+SAC  L A+D G  IHA ++K G+K+N  L T
Sbjct: 403 -TETLVLFQEMQI-EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGT 460

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY K G ++ ALEVF  ++ + V  W+ +I G AM G   ++L  FS M+E  V P
Sbjct: 461 TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP 520

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N +TF  VL AC H GLVDEG   FN M   + + P +KHY CMVD+LGRAG+L EA E 
Sbjct: 521 NEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEEL 580

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           IE MP+ P  S WGALLGACK + + E  E     L+EL P++ G  VLLSNIYA  G W
Sbjct: 581 IESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNW 640

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            +V E+R  MR  G+ K PGCS IE +G +H+FLAG+ +HP  + I   LDE+  +LK  
Sbjct: 641 VDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLE 700

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY P+   +   ++EE+ +E  L  HSE+LAIA+GLI+++P  PIRIVKNLR+C DCHT 
Sbjct: 701 GYAPDTREVSLDIDEEE-KETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTA 759

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AKLISK +NREI++RDR+RFHHF+ G+CSCMDYW
Sbjct: 760 AKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 229/467 (49%), Gaps = 58/467 (12%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           +++C+NIKQ  QI +QM+ +G F D ++AS+L        F ++  + ++F  I  PN +
Sbjct: 33  LQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGF 92

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA-RLVQFRVGQAIHG 163
             NT+++ Y     P ++  ++ + +  S    + +T+P + ++ + RL +F  G+ I  
Sbjct: 93  ICNTMMKGYMQRNSPCKAIWVY-KFMLESNVAADNYTYPILFQSCSIRLAEFD-GKCIQD 150

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            V+K  F+ D++I N+LI+ YA+CG+L+ A  VF      D+VSWNSM++G+V  G  E+
Sbjct: 151 HVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEE 210

Query: 224 AIELYREMEMENVKPDEVTMV------AVLSACA-----KKRDL----------EFGRWP 262
           A ++Y  M   NV      +V       V  AC      K++DL          E     
Sbjct: 211 AKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMY 270

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            EAL +F E+  +  +  DE   +SVLSAC++L  +  G  +H  + K GI+    L  +
Sbjct: 271 EEALILFKEMN-ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNA 329

Query: 323 LIDMYT-------------------------------KCGNLDKALEVFHTVKSRDVFVW 351
           LI MY+                               KCG ++KA  +F ++  +D   W
Sbjct: 330 LIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSW 389

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           S MI+G+A      E L LF  MQ    KP+     +V+ AC+H   +D+G+     +  
Sbjct: 390 SAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRK 449

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             G+   +   T +++M  + G +++A+E  + +    G S W AL+
Sbjct: 450 -NGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/608 (41%), Positives = 367/608 (60%), Gaps = 47/608 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYS--ASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           ++ L+QIH ++L   +     S    K+   CAL  +  ++YAR++F QI +PN+++WN+
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 109 LIRAYSSSAEPIQS-FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           +IR  S S  P +   ++F ++V      PN FT  FV+KA + +     GQ +H  V+K
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           S F    F+  +L++FYA C D+ +A  VF  I  +++V+W++MISG+ + G        
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLV------ 174

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
                                              NEAL +F ++Q    V PDE T VS
Sbjct: 175 -----------------------------------NEALGLFRDMQ-KAGVVPDEVTMVS 198

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           V+SACA  GA+D G  +HA + KQ I+ +  L+T+L++MY KCG +++A EVF  +  +D
Sbjct: 199 VISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKD 258

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
              WS+MI G A+ G   +AL+ F RM+EAKVKPN VTF  VL AC+HSGLV EGR +++
Sbjct: 259 TKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWS 318

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M   +G+VP ++ Y CMVD+L RA L+++A   +E MPI P   +W  LL  CK  +N+
Sbjct: 319 SMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNL 377

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           + +E     LLELEP N    +LLSN+YA   +W+ +S++RK M+  G+K  PGCSSIEV
Sbjct: 378 DKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEV 437

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
           +G +H+F+ G+ SHP   E+   L +I  R+ + G+ P  S +L  V +E+ +E AL  H
Sbjct: 438 DGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE-KENALCEH 496

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SERLAIAYGL+  +    IRIVKNLRVCGDCH V K+IS  Y REI++RDR RFH F  G
Sbjct: 497 SERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNG 556

Query: 648 NCSCMDYW 655
           +CSC D+W
Sbjct: 557 SCSCRDFW 564


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/622 (41%), Positives = 371/622 (59%), Gaps = 55/622 (8%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF------DQ 97
           L   C  + +L QIH  +L+TGL  +P   +K FT  +    +S+ YA            
Sbjct: 24  LNSHCNTLSKLTQIHAFILKTGLQNNPLILTK-FTSTS-SNLNSIHYATSFLFPPSHTTS 81

Query: 98  IPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            P P  + + +NTLIRAYS + +   +  +F + +      PN+FTFPFV+K  A +   
Sbjct: 82  TPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSL 141

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC--VFVMIGKKDVVSWNSMIS 213
           R+G+ +HG V+K  FE+D+ + N+LIH Y   G+    +   VF    K D V+W++MI+
Sbjct: 142 RLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIA 201

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           GFV+ G   +A++L+REM+             V+  C                       
Sbjct: 202 GFVRLGCSSRAVDLFREMQ-------------VMGVC----------------------- 225

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                 PDE T VSVLSACA LGA+++G  + + ++K+ I  +  L  +LIDM+ KCGN+
Sbjct: 226 ------PDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNV 279

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           DKA+++F  + SR +  W+++IAG AM+G G +A+ LF  M E  + P+ V F  VL AC
Sbjct: 280 DKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSAC 339

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SHSGLVD+GR +F  ME  + +VP V+HY CMVD+L R G + EA EF++KMP  P   +
Sbjct: 340 SHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQII 399

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           W  ++ AC     ++L E     L++ EP +    VLLSNIYAK  +W+  +++R+ M +
Sbjct: 400 WRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDM 459

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            G+KK PG + IEVN E+++F+AG+ SH   KEIY  +DE+   +K  GYVP  S +L  
Sbjct: 460 RGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLD 519

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           ++EED +E AL  HSE+LAIA+ L++  P   IRIVKNLRVC DCH+  K ISK+YNREI
Sbjct: 520 IDEED-KEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREI 578

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RDR RFHHF+ G CSC D+W
Sbjct: 579 VVRDRNRFHHFKNGLCSCRDFW 600


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/622 (40%), Positives = 390/622 (62%), Gaps = 29/622 (4%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQ 97
           +PV S++ +CK++ +L+QIH QM++T L    ++ S+L   C+L G    L+YA  +F +
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSR 66

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFR 156
           I  PN + +  LI+ +S ++ P++S +++ +++    Y    EF+ P V+KA  +L+ F 
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFD 126

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG V+K+    D F+ NS++  Y   G++ +A  VF  +  +DVVSWNSMI+G++
Sbjct: 127 EGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  E A EL+ EM     + D V+  A++    K+                    LS 
Sbjct: 187 KAGEIELASELFDEMP----ERDLVSCNAMIDGYGKE-------------------MLSL 223

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-YLTTSLIDMYTKCGNLDK 335
            + PD    VSVLSA A LG ++ G  +HA +    I+L+  ++ ++LIDMY+KCG ++ 
Sbjct: 224 GLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIEN 283

Query: 336 ALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           A  VF ++   R++  W++MI+G A++G  REALD+F  M+   ++PN +TF  +L  CS
Sbjct: 284 AYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCS 343

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GLV+EG+ +F  M   Y +VP ++HY CM+D+ GRAG L++A+  I+ MP       W
Sbjct: 344 HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAW 403

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            A+L A   H ++E+ + A    +EL P++  + VLLSNIYAK G+WD+V+++R  MR  
Sbjct: 404 KAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQR 463

Query: 515 GLKKEPGCSSIEVNGEIHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
           G+KK  GCSS+ VNG++H+FL G E       ++ +K+ E+V+RLK  GY P+ + +L  
Sbjct: 464 GVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLD 523

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           +E+E  +E  LNLHSE++AIA+GLI +  S PI IVKNLRVC DCH   KL+SK+YNR+I
Sbjct: 524 IEDEG-KESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQI 582

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RD+ RFHHF  G CSC +YW
Sbjct: 583 IMRDQNRFHHFENGCCSCNEYW 604


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/610 (41%), Positives = 370/610 (60%), Gaps = 47/610 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYS--ASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           LI++C++++ L+QIH ++L   +     S    K+   CAL  +  ++YAR++F QI +P
Sbjct: 63  LIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRP 122

Query: 102 NLYTWNTLIRAYSSSAEPIQS-FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           N+++WN++IR  S S  P +   ++F ++V      PN FT  FV+KA + +     GQ 
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  V+KS F    F+  +L++FYA C D+ +A  VF  I  +++V+W++MISG+ + G 
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
                                                     NEAL +F ++Q    V P
Sbjct: 243 V-----------------------------------------NEALGLFRDMQ-KAGVVP 260

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           DE T VSV+SACA  GA+D G  +HA + KQ I+ +  L+T+L++MY KCG +++A EVF
Sbjct: 261 DEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVF 320

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  +D   WS+MI G A+ G   +AL+ F RM+EAKVKPN VTF  VL AC+HSGLV 
Sbjct: 321 DAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVS 380

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EGR +++ M   +G+VP ++ Y CMVD+L RA L+++A   +E MPI P   +W  LL  
Sbjct: 381 EGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 439

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CK  +N++ +E     LLELEP N    +LLSN+YA   +W+ +S++RK M+  G+K  P
Sbjct: 440 CKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVP 499

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCSSIEV+G +H+F+ G+ SHP   E+   L +I  R+ + G+ P  S +L  V +E+ +
Sbjct: 500 GCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE-K 558

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E AL  HSERLAIAYGL+  +    IRIVKNLRVCGDCH V K+IS  Y REI++RDR R
Sbjct: 559 ENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRVR 618

Query: 641 FHHFRGGNCS 650
           FH F  G+CS
Sbjct: 619 FHKFVNGSCS 628


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/636 (39%), Positives = 379/636 (59%), Gaps = 51/636 (8%)

Query: 21  RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           +HP    +T N   Q H     +L++    ++ L+Q+H  ++ +GL       +KL +  
Sbjct: 14  QHP----VTRNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLIS-- 67

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
            + T  S+ YAR +F  +P P+ + +++L++  S     I + + + +++++     N +
Sbjct: 68  LVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN-Y 126

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  VIKA A L   R+G+ IH  V+   +  D+++  +LI  YA   D+ +A  VF  +
Sbjct: 127 TFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAM 186

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            ++ +++WNS+ISG+ Q G                                         
Sbjct: 187 PQRTIIAWNSLISGYDQNGL---------------------------------------- 206

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
            P E++ +FH L +     PD  T VS+LS+C+QLGA+D G  +H      G  LN  L 
Sbjct: 207 -PQESIGLFH-LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLG 264

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           TSLI+MYT+CGN+ KA EVF ++K R+V  W+ MI+G+ M+G GR+A++LF+ M+    +
Sbjct: 265 TSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 324

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN +TF  VL AC+HSGL+D+GR  F+ M+  YG+VPGV+H  CMVDM GRAGLL++A +
Sbjct: 325 PNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQ 384

Query: 441 FIEK-MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           FI+K +P  PG +VW ++LGAC++H N +L      H+L +EPEN G  V+LSNIYA  G
Sbjct: 385 FIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAG 444

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           + D V  +R  M    LKK+ G S+IE+N + + F  G+ SHP    IY  LDE++ R  
Sbjct: 445 RMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCS 504

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GYVP    L+  +EEE+ ++ AL  HSE+LA+A+GL+     + IRIVKNLR+C DCH
Sbjct: 505 ESGYVPAPESLMHDLEEEE-RDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCH 563

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  K IS + +REI++RD++RFHHF+ G+CSC+DYW
Sbjct: 564 SAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 387/671 (57%), Gaps = 44/671 (6%)

Query: 11  TLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           T S P + L +  +P       G     +P         ++K L+ +H++++   L ++ 
Sbjct: 25  TSSVPKLELDQKNSPKETAFMLGQVLDTYP---------DLKTLRTVHSRIISEDLRYNS 75

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
               KL    A  +   +  AR++FD+IP+ N+   N +IR+Y ++    +   +F  + 
Sbjct: 76  SLGVKLMR--AYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMC 133

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
            +    P+ +TFP V+KA +      +G+ IHG   K      LF+ N L+  Y  CG L
Sbjct: 134 -SCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFL 192

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           + A  V   + ++DVVSWNS+++G+ Q   F+ A+E+ REME   +  D  TM ++L A 
Sbjct: 193 SEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAV 252

Query: 251 AKK--------RDLEF--GR-----W------------PNEALSIFHELQLSKNVNPDEF 283
           +          +D+ F  G+     W            P EA+ ++  ++ +    PD  
Sbjct: 253 SNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGME-ADGFEPDAV 311

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           +  SVL AC    A+ +G +IH  ++++ +  N  L  +LIDMY KCG LD+A +VF  +
Sbjct: 312 SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENM 371

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           KSRDV  W+ MI+ +   G G +A+ LFS+MQ++ + P+++ F   L ACSH+GL++EGR
Sbjct: 372 KSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGR 431

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             F  M   Y + P ++H  CMVD+LGRAG + EA +FI++MP+ P   VWGALLGAC++
Sbjct: 432 SCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRV 491

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H N ++   A   L +L PE  G  VLLSNIYAK G+W+ V+ +R  M+  GLKK PG S
Sbjct: 492 HSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGAS 551

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
           ++EVN  IH FL G+ SHP   EIY +LD +V ++K  GYVP+    L  VEEED +E  
Sbjct: 552 NVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEED-KETH 610

Query: 584 LNLHSERLAIAYGLISVE---PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           L +HSE+LAI + L++ E    +  IRI KNLR+CGDCH  AKLIS++ +REI++RD  R
Sbjct: 611 LAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNR 670

Query: 641 FHHFRGGNCSC 651
           FH FR G CSC
Sbjct: 671 FHVFRFGVCSC 681


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/678 (38%), Positives = 390/678 (57%), Gaps = 75/678 (11%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+K C    ++K+ K+IH Q++      + ++ +    ++  C       ++ A +MFD+
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC-----RQIDDAYKMFDR 207

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L +WNT+I  +S +    ++  + L++  +    P+  T   V+ AAA +    V
Sbjct: 208 MPERDLVSWNTIIAGFSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMV 266

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G++IHG  I++ F   + IS +L   Y+ CG +  A  +F  + +K VVSWNSM+ G+VQ
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 218 GGFFEKAIELYREMEME-----------------------------------NVKPDEVT 242
            G  EKAI ++ +M  E                                   N+  D   
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 243 MVAVLSACAKKRDLEF---------GR----WP------------NEALSIFHELQLSKN 277
           M +++S  +K + ++          GR    W             +EAL+ F E++ S  
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLG 445

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + PD FT VSV+ A A+L        IH  + +  +  N ++TT+L+DMY+KCG +  A 
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           ++F  +  R V  W+ MI G+  +G GR ALDLF +M++  V+PN +T+ +V+ ACSHSG
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVDEG   F  M+  YG+ P + HY  MVD+LGRAG + EA +FIE MPI PG +V+GA 
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAX 625

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
            GACKIH+N+E+ E A   L EL P+  G  VLL+NIYA T KW  V+E+RK M   GLK
Sbjct: 626 XGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGCS +E+  E+H F +G ++HP  K IY+ L+E+V  +K+ GYVP+ + +L +  E+
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDV--ED 743

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           DVQEQ LN HSE+LAIA+GL++  P   I + KNLRVCGDCH   K IS +  REI++RD
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRD 803

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 804 MQRFHHFKNGICSCGDYW 821



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 183/376 (48%), Gaps = 48/376 (12%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + HP   L++ C ++K+L QI   +++ GL+ +    +KL +      + S+  A  +F+
Sbjct: 48  YKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVS--LFSKYGSINEAARVFE 105

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I       ++T+++ Y+ ++  +++ + FL  +      P  + F +++K        +
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSS-LETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLK 164

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG +I +SF  ++F    +++ YA C  +  AY +F  + ++D+VSWN++I+GF 
Sbjct: 165 RGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q GF +KA+EL   M+ E  +PD +T+V V                              
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTV------------------------------ 254

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                       L A A +G + +G  IH    + G      ++T+L DMY+KCG+++ A
Sbjct: 255 ------------LPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETA 302

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  + V  W++M+ G+   G   +A+ +F +M E  + P  VT    L AC+  
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 397 GLVDEGRM---FFNQM 409
           G ++ G+    F +Q+
Sbjct: 363 GDLERGKFVHKFVDQL 378



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 51/286 (17%)

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           +VIK+   ++      L+  ++  G +  A  VF  I  K    +++M+ G+ +    E 
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+     M  ++VKP       +L  C    DL+ G+                       
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGK----------------------- 167

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                              +IH ++       N +  T +++MY KC  +D A ++F  +
Sbjct: 168 -------------------EIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RD+  W+T+IAGF+  G  ++AL+L  RMQ+   +P+++T   VL A +  GL+  G+
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268

Query: 404 MFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                    Y +  G    V   T + DM  + G ++ A    + M
Sbjct: 269 SIHG-----YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           K G+       T L+ +++K G++++A  VF  +  +   ++ TM+ G+A       AL 
Sbjct: 74  KNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALA 133

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
              RM+   VKP    FT +L  C  +  +  G+    Q+         V   T +V+M 
Sbjct: 134 FLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL-ITNSFAANVFAMTGVVNMY 192

Query: 430 GRAGLLDEAVEFIEKMP 446
            +   +D+A +  ++MP
Sbjct: 193 AKCRQIDDAYKMFDRMP 209


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/638 (39%), Positives = 377/638 (59%), Gaps = 52/638 (8%)

Query: 20  PRH-PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           PRH PN   L   +        + SLI +C ++++LKQI    ++T    +P   +KL  
Sbjct: 22  PRHEPNTAALEPPSS------SILSLIPKCTSLRELKQIQAYTIKTHQN-NPTVLTKLIN 74

Query: 79  PCALG-TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
            C    T +S+++A  MFD+IPQP++  +NT+ R Y+   +P+++ ++  Q V  S   P
Sbjct: 75  FCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQ-VLCSGLLP 133

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           +++TF  ++KA ARL     G+ +H + +K    D++++  +LI+ Y  C D+  A  VF
Sbjct: 134 DDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVF 193

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             IG+  VV++N                                   A++++CA+     
Sbjct: 194 DKIGEPCVVAYN-----------------------------------AIITSCARNSR-- 216

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
               PNEAL++F ELQ S  + P + T +  LS+CA LGA+D+G  IH  +KK G     
Sbjct: 217 ----PNEALALFRELQES-GLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYV 271

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            + T+LIDMY KCG+LD A+ VF  +  RD   WS MI  +A +G G +A+ +   M++A
Sbjct: 272 KVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKA 331

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           KV+P+ +TF  +L ACSH+GLV+EG  +F+ M   YG+VP +KHY CM+D+LGRAG L+E
Sbjct: 332 KVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEE 391

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A +FI+++PI P   +W  LL +C  H NVE+A+     + EL+  + G  V+LSN+ A+
Sbjct: 392 ACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCAR 451

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
            G+WD+V+ LRK M   G  K PGCSSIEVN  +H+F +G+  H     ++  LDE+V  
Sbjct: 452 NGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKE 511

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           LK  GYVP+ S +     E++ +E  L  HSE+LAI YGL++  P   IR+VKNLRVC D
Sbjct: 512 LKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVD 571

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH  AK IS ++ R+I+LRD  RFHHF+ G CSC DYW
Sbjct: 572 CHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/688 (39%), Positives = 405/688 (58%), Gaps = 90/688 (13%)

Query: 43  SLIKQCKNIK--QL-KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C  +   QL K+IH  +L+ GL  D +  + L      G  + +EYAR +FD++ 
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALML--MYGECACVEYARLVFDKMM 156

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF---PNEFTFPFVIKAAARLVQFR 156
           + ++ +W+T+IR+ S + E    F + L+L+    +    P+E     ++   A     R
Sbjct: 157 ERDVVSWSTMIRSLSRNKE----FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 212

Query: 157 VGQAIHGMVIKSSFEDDLFI--SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN----- 209
           +G+A+H  VI++S  + + +  + +L+  YA CG L +A  +F  + +K VVSW      
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272

Query: 210 ---------------------------SMISGFVQGGFFEKAIELYREM----------- 231
                                      +M+S  V+ GF   A++L +++           
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGF-TGALQLGKQLHAYILRNGFSV 331

Query: 232 ----------------EMENVKP--------DEVTMVAVLSACAKKRDLEFGRWPNEALS 267
                           ++ N +         D +   A+LSA A+   ++      +A +
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCID------QAFN 385

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F +++ S  V P + T VS+LS CA  GA+D+G  +H+ + K+ ++++C L T+L+DMY
Sbjct: 386 LFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMY 444

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG+++ A  +F    SRD+ +W+ +I GFAM+G G EALD+F+ M+   VKPN +TF 
Sbjct: 445 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFI 504

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSH+GLV EG+  F +M   +G+VP ++HY CMVD+LGRAGLLDEA E I+ MPI
Sbjct: 505 GLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 564

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   VWGAL+ AC++H+N +L E A + LLE+EPEN G  VL+SNIYA   +W + + +
Sbjct: 565 KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGV 624

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           RK M+  G+KKEPG S IEVNG +H+FL G+ SHP  + I   L E+  +L   GYVP+ 
Sbjct: 625 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 684

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +L  ++EE+ +E AL  HSE+LA+A+GLIS  PS PIRIVKNLRVC DCH   KL+SK
Sbjct: 685 STVLLNIDEEE-KETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSK 743

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +Y R I++RDR RFHHFR G CSC DYW
Sbjct: 744 IYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 185/387 (47%), Gaps = 65/387 (16%)

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           F  P V+KA  ++   ++G+ IHG V+K   + D+F+ N+L+  Y  C  +  A  VF  
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           + ++DVVSW++MI    +   F+ A+EL REM    V+P EV MV++++  A   ++  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 260 RW---------PNEALSI------------FHELQLSKNV-----NPDEFTFVSVLSACA 293
           +           NE + +               L L++ +          ++ ++++ C 
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 294 QLGAMDIGVQIHAKMKKQGI------------------------KLNCY----------- 318
           +   ++ G ++  +M+++ I                        +L+ Y           
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L T+L+DMY KC ++  A  +F + ++RDV +W+ M++ +A   C  +A +LF +M+ + 
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           V+P  VT  ++L  C+ +G +D G+   + ++     V  + + T +VDM  + G ++ A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN-TALVDMYAKCGDINAA 453

Query: 439 VE-FIEKMPIVPGASVWGALLGACKIH 464
              FIE   I     +W A++    +H
Sbjct: 454 GRLFIE--AISRDICMWNAIITGFAMH 478



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + SLI +C     L   KQ+H  +LR G       A+ L      G  S +  AR +FD 
Sbjct: 301 MLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVD--MYGKCSDIRNARALFDS 358

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
               ++  W  ++ AY+ +    Q+F +F Q+   S   P + T   ++   A      +
Sbjct: 359 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVTIVSLLSLCAVAGALDL 417

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H  + K   E D  ++ +L+  YA CGD+  A  +F+    +D+  WN++I+GF  
Sbjct: 418 GKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 477

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            G+ E+A++++ EME + VKP+++T + +L AC+
Sbjct: 478 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 388/656 (59%), Gaps = 69/656 (10%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           +P   +P+  T  N HQ     +FSL + C ++ QLKQ+H   LRT     P   + LF 
Sbjct: 33  IPPASSPSASTAGNHHQR----IFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFL 85

Query: 79  PCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQSFMIFLQLVYNS 133
              +     +FS + YA  +FD I   + + WNTLIRA +   +   ++FM++ +++   
Sbjct: 86  YGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERG 145

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P++ TFPFV+KA A +  F  G+ +H  ++K  F  D++++N LIH Y  CG L +A
Sbjct: 146 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 205

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  + ++ +VSWNSMI   V+                                    
Sbjct: 206 RKVFDEMPERSLVSWNSMIDALVR------------------------------------ 229

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-- 311
               FG + + AL +F E+Q  ++  PD +T  SVLSACA LG++ +G   HA + ++  
Sbjct: 230 ----FGEY-DSALQLFREMQ--RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 282

Query: 312 -GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
             + ++  +  SLI+MY KCG+L  A +VF  ++ RD+  W+ MI GFA +G   EA++ 
Sbjct: 283 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNF 342

Query: 371 FSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           F RM + +  V+PN+VTF  +L AC+H G V++GR +F+ M   Y + P ++HY C+VD+
Sbjct: 343 FDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDL 402

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELEPENH-- 485
           + RAG + EA++ +  MP+ P A +W +LL AC K   +VEL+E    +++  + +N   
Sbjct: 403 IARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESS 462

Query: 486 -----GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
                GA VLLS +YA   +W++V  +RK M   G++KEPGCSSIE+NG  H+F AG++S
Sbjct: 463 NGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTS 522

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHL-LQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           HP  K+IY +L  I  RL+S GY+P+RS   L     +  +E +L LHSERLAIA+GLI+
Sbjct: 523 HPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLIN 582

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + P  PIRI KNLRVC DCH V KLISK++N EI++RDR RFHHF+ G+CSC+DYW
Sbjct: 583 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/656 (39%), Positives = 388/656 (59%), Gaps = 69/656 (10%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           +P   +P+  T  N HQ     +FSL + C ++ QLKQ+H   LRT     P   + LF 
Sbjct: 24  IPPASSPSASTAGNHHQR----IFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFL 76

Query: 79  PCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQSFMIFLQLVYNS 133
              +     +FS + YA  +FD I   + + WNTLIRA +   +   ++FM++ +++   
Sbjct: 77  YGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERG 136

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P++ TFPFV+KA A +  F  G+ +H  ++K  F  D++++N LIH Y  CG L +A
Sbjct: 137 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 196

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  + ++ +VSWNSMI   V+                                    
Sbjct: 197 RKVFDEMPERSLVSWNSMIDALVR------------------------------------ 220

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-- 311
               FG + + AL +F E+Q  ++  PD +T  SVLSACA LG++ +G   HA + ++  
Sbjct: 221 ----FGEY-DSALQLFREMQ--RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 273

Query: 312 -GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
             + ++  +  SLI+MY KCG+L  A +VF  ++ RD+  W+ MI GFA +G   EA++ 
Sbjct: 274 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNF 333

Query: 371 FSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           F RM + +  V+PN+VTF  +L AC+H G V++GR +F+ M   Y + P ++HY C+VD+
Sbjct: 334 FDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDL 393

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELEPENH-- 485
           + RAG + EA++ +  MP+ P A +W +LL AC K   +VEL+E    +++  + +N   
Sbjct: 394 IARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESS 453

Query: 486 -----GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
                GA VLLS +YA   +W++V  +RK M   G++KEPGCSSIE+NG  H+F AG++S
Sbjct: 454 NGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTS 513

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHL-LQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           HP  K+IY +L  I  RL+S GY+P+RS   L     +  +E +L LHSERLAIA+GLI+
Sbjct: 514 HPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLIN 573

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + P  PIRI KNLRVC DCH V KLISK++N EI++RDR RFHHF+ G+CSC+DYW
Sbjct: 574 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/628 (39%), Positives = 378/628 (60%), Gaps = 56/628 (8%)

Query: 41  VFSLIKQCKNIKQ---------LKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSSLE 89
           +  ++++C N+ Q         L+QIH   +R G+        K  +F   +L +   + 
Sbjct: 11  LLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 90  YAREMFDQIPQP-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           YA ++F +I +P N++ WNTLIR Y+     + +  ++ ++  +    P+  T+PF++KA
Sbjct: 71  YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKA 130

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
             ++   R+G+ IH +VI+S F   +++ NSL+H YA CGD+A AY VF  + +KD+V+W
Sbjct: 131 VGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           NS+I+GF + G                                          P EAL++
Sbjct: 191 NSVINGFAENG-----------------------------------------KPEEALAL 209

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           + E+ L K + PD FT VS+LSACA++GA+ +G + H  M K G+  N + +  L+D+Y 
Sbjct: 210 YTEMDL-KGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFT 387
           +CG +++A  +F  +  ++   W+++I G A+ G G+EA++LF  M+  + + P  +TF 
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV 328

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSH G+V EG  +F +M   Y + P ++H+ CMVD+L RAG + +A E+I KMP+
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPM 388

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W  LLGAC +H + +LAE A   +L+LEP + G  VLLSN+YA   +W +V ++
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           RK M   G++K PG S +EV   +H+FL G+ SHP    IY+KL E+  RL+  GYVP  
Sbjct: 449 RKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQI 508

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S++   VEEE+ +E AL  HSE++AIA+ LIS     PIR+VKNL+VC DCH   KL+SK
Sbjct: 509 SNVYVDVEEEE-KENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSK 567

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +YNREI++RDR RFHHF+ G+CSC DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/641 (41%), Positives = 386/641 (60%), Gaps = 34/641 (5%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMF-----DQI 98
           ++ CK + QLKQ+H Q+ + GL   P + +KL    A + +  SL+YAR+ F     D  
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
               L+  N+LIR YSS+    ++ +++++++      PN +TFPFV+    ++  F  G
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +HG V+K   E+D+FI N LIHFYA CG +   + VF  + +++VVSW S+I G+ +G
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 219 GFFEKAIELYREM---EMENVKPDEVTMVAVLSACAK------KRDL--------EFGR- 260
              ++A+ L+ EM    M N   D       + A  +       R+L         + R 
Sbjct: 211 DRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 270

Query: 261 -WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL-----GAMDIGVQIHAKMKKQGIK 314
               EAL+I  E+ L +   PD  T +S +SA AQL     G +  G  +H  ++K GI 
Sbjct: 271 GLAREALAILDEM-LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIP 329

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            +  L T+L+DM+ +CG+   A++VF+ +  RDV  W+  I   AM G G  A  LF++M
Sbjct: 330 CDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQM 389

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
               VKP+ V F  VL ACSH G V++G   F+ ME  +G+ P ++HY CMVD+LGRAGL
Sbjct: 390 LIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGL 448

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L EA + I+ MP+ P   VWG+LL AC++H+NVE+A YA   + EL P+  G  VLLSNI
Sbjct: 449 LREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNI 508

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA  GKW +V+ +R ++R  G++K PG SS++VNG IH+F +G+ SHP    I   L E+
Sbjct: 509 YASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEM 568

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             R    G++P+ S++L  V+E++ +E  L+ HSE+LAIA+GLI+   S PIR+VKNLR+
Sbjct: 569 NCRFSDAGHIPDLSNVLLDVDEQE-KEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRM 627

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH+ AK+ S +YNREI++RD  RFH FR G CSC DYW
Sbjct: 628 CSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/624 (41%), Positives = 377/624 (60%), Gaps = 27/624 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE-----YAREMF 95
           + S++  C +I Q+KQ+H  + R GL    +  +KL     L T + L+     Y R +F
Sbjct: 42  LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKL-----LRTLTKLDVPMDPYPRLVF 96

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            Q+  PN + W  LIR Y+     ++S +++  +       P  FTF  ++KA +  +  
Sbjct: 97  QQVEYPNPFLWTALIRGYALQGPFMESVLLYNSM-RRQGIGPVSFTFTALLKACSAALDV 155

Query: 156 RVGQAIHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            +G+ +H   I    F  DL++ N+LI  Y  CG L   + VF  +  +DV+SW S+I  
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + + G  E A EL+  + M+    D V   A+++  A+         P EAL +F  +Q 
Sbjct: 216 YAKVGNMEAASELFDGLPMK----DMVAWTAMVTGYAQNAR------PREALEVFERMQ- 264

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIG--VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +  V  DE T V V+SACAQLGA      V+  A+    G   N  + ++LIDMY KCG+
Sbjct: 265 AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGS 324

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           ++ A +VF  ++ R+V+ +S+MI GFAM+G    A++LF  M + ++KPN VTF  VL A
Sbjct: 325 VEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTA 384

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH+G+V++G+  F  ME  +GV P   HY CMVD+LGRAG L+EA+  ++ MP+ P   
Sbjct: 385 CSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGG 444

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VWGALLGAC+IH N ++A+ A SHL ELEP   G  +LLSNIYA  G+WD+VS++RK MR
Sbjct: 445 VWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMR 504

Query: 513 VSGLKKEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
             GLKK PGCS +E   G IH+F AG+ SHP  +EI   L++++ RLK  GY PN S + 
Sbjct: 505 AKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVA 564

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             + +E+ +++ L  HSE+LA+A+GL++      IRIVKNLR+C DCH+V    S++  R
Sbjct: 565 YDISDEE-KKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGR 623

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD  RFHHFR G CSC ++W
Sbjct: 624 EIVVRDNMRFHHFRDGRCSCGNFW 647


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/519 (45%), Positives = 344/519 (66%), Gaps = 12/519 (2%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           PN+FT   V+KA A +     G+  H  +IK  FE D+ +  +L+H YA CG L  A  V
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + ++   +WN+MI+G  Q    +KA++L+ EM     + D V+  AV++  A+    
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMS----ERDVVSWTAVIAGYAQNG-- 121

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
               + +E+L++F++++ +  +  D F   SVLSACA L A+++G Q HA + + G  L+
Sbjct: 122 ----YGDESLNVFNQMRKT-GMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + ++L+DMY K G+++ A +VF  +  R+   W+++I G A +G G +A+ LF +M +
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           A +KPN ++F  VL ACSH+GLV+EGR +FN M   YG+VP V HYTCM+D+LGRAG LD
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLD 296

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA  FI  MP+ P  SVWGALLGAC+IH N ELA+    HLL +E +  G  VLLSNIYA
Sbjct: 297 EAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYA 356

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             G+WD+ +++RK M+  G+ K+PG S IEV   +H F+AGE+SHP  KEI+  L+ +  
Sbjct: 357 AAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSR 416

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           ++K+ GYVPN++ +LQ V E+D +E +L+ HSE+LAIA+G+I+  P   IR+ KNLRVCG
Sbjct: 417 KMKAAGYVPNKNFVLQDV-EDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCG 475

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHTV K IS  + R+I++RD  RFHHF+ G CSC DYW
Sbjct: 476 DCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 39/225 (17%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           + K V P++FT  +V+ ACA + +++ G Q H  + K G + +  + T+L+ MY +CG+L
Sbjct: 2   VGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSL 61

Query: 334 D-------------------------------KALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           +                               KAL++F+ +  RDV  W+ +IAG+A  G
Sbjct: 62  EDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNG 121

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN---QMEPVYGVVPGV 419
            G E+L++F++M++  +K +     +VL AC+    ++ GR F     Q      +V G 
Sbjct: 122 YGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG- 180

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
              + +VDM  ++G +++A +  +KMP     S W +++  C  H
Sbjct: 181 ---SALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQH 221



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 137/306 (44%), Gaps = 47/306 (15%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALG 83
           V  G + +   + +++K C +I  L   KQ H  +++ G   D    + L   +  C   
Sbjct: 2   VGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCG-- 59

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-------------- 129
              SLE A  +FD++ + +  TWN +I  ++ + +  ++  +F ++              
Sbjct: 60  ---SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAG 116

Query: 130 ------------VYN----SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                       V+N    +    + F    V+ A A L    +G+  H  V++S F  D
Sbjct: 117 YAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + + ++L+  YA  G +  A  VF  + +++ VSWNS+I+G  Q G    A+ L+ +M  
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             +KP+E++ V VLSAC+    +      NE    F+ +  +  + PD   +  ++    
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLV------NEGRGYFNLMTQNYGIVPDVSHYTCMIDLLG 290

Query: 294 QLGAMD 299
           + G +D
Sbjct: 291 RAGCLD 296



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 113/274 (41%), Gaps = 47/274 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++  C ++  L   +Q H  ++++G   D    S L    A     S+E A ++FD++P
Sbjct: 147 SVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA--KSGSMEDACQVFDKMP 204

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q N  +WN++I   +       + ++F Q++  +   PNE +F  V+ A +         
Sbjct: 205 QRNEVSWNSIITGCAQHGRGNDAVLLFEQML-QAGIKPNEISFVGVLSACSHT------- 256

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
              G+V +     +L   N     Y I  D++   C+  ++G+                G
Sbjct: 257 ---GLVNEGRGYFNLMTQN-----YGIVPDVSHYTCMIDLLGR---------------AG 293

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             ++A      M +E   PD     A+L AC    + E  +   E L +  E+Q++    
Sbjct: 294 CLDEAENFINGMPVE---PDVSVWGALLGACRIHGNTELAKRIAEHL-LGMEVQIAG--- 346

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                +V + +  A  G  D   ++   MK +G+
Sbjct: 347 ----IYVLLSNIYAAAGQWDDAAKVRKLMKDRGV 376


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/605 (41%), Positives = 374/605 (61%), Gaps = 24/605 (3%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + +H  ++R G+  + + AS L              AR +  +   P    WN LI  ++
Sbjct: 43  RAVHAHVVRLGMGRNAHVASSLVAAYT--AGGDGAAARALVGECDTP--VAWNALISGHN 98

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-FRVGQAIHGMVIKSSFEDD 173
                 +S   F+ +   +   P   T+  V+ A  +  +   +G  +HG V+ S    D
Sbjct: 99  RGGRFGESCGSFVDMA-RAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPD 157

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           L + N+L+  YA C D+  A+ VF  +  + VVSW S++SG  + G  ++A +L+  M  
Sbjct: 158 LRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMP- 216

Query: 234 ENVKPDEVTMVAVLSA---CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
              + D V+  A++      A+ R         EAL +F E+Q S NV+ DEFT VSV++
Sbjct: 217 ---ERDTVSWTAMIDGYVWAARFR---------EALEMFREMQYS-NVSADEFTMVSVIT 263

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACAQLGA+++G  +   M +QGIK++ ++  +LIDMY+KCG++++AL+VF  +  RD F 
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G A+ G   EA+++F RM      P+ VTF  VL AC+H+GLVD+GR FF  M 
Sbjct: 324 WTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMI 383

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             Y + P V HY C++D+LGRAG + EA++ I++MP+ P +++WG LL AC++H N E+ 
Sbjct: 384 EAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIG 443

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     LLEL+PEN    +LLSNIYAK  +W++V  LR  +   G+KKEPGCS IE++G 
Sbjct: 444 ELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGI 503

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH+F+AG+ SHP+ KEIYSKL+ I++ L + GY P+ + +   V E++ +++ L  HSE+
Sbjct: 504 IHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKE-KKKVLYWHSEK 562

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+ L+S +P+  IRIVKNLR+C DCH   KLIS+LY RE+++RDR RFHHFR G CS
Sbjct: 563 LAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCS 622

Query: 651 CMDYW 655
           C DYW
Sbjct: 623 CKDYW 627



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 37/323 (11%)

Query: 137 PNEFTFPFVIKAAARLV----QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
           P+ +TFP ++KA AR           +A+H  V++     +  +++SL+  Y        
Sbjct: 17  PDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTA---GGD 73

Query: 193 AYCVFVMIGKKDV-VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
                 ++G+ D  V+WN++ISG  +GG F ++   + +M      P  VT V+VLSAC 
Sbjct: 74  GAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACG 133

Query: 252 K-KRDLEFGRWPNEALSIFHELQLSKNVNPD---EFTFVSVLSACAQLGAMDIGVQIHAK 307
           K  RD+  G          H   +   V PD   E   V + + CA +G+        A 
Sbjct: 134 KGTRDVLLGMQ-------VHGRVVGSGVLPDLRVENALVDMYAECADMGS--------AW 178

Query: 308 MKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
               G+++   ++ TSL+    + G +D+A ++F  +  RD   W+ MI G+      RE
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----Y 422
           AL++F  MQ + V  +  T  +V+ AC+  G ++ G     +   VY    G+K      
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG-----EWVRVYMSRQGIKMDAFVG 293

Query: 423 TCMVDMLGRAGLLDEAVEFIEKM 445
             ++DM  + G ++ A++  + M
Sbjct: 294 NALIDMYSKCGSIERALDVFKGM 316



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)

Query: 274 LSKNVNPDEFTFVSVLSACAQL----GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           L++   PD +TF ++L A A+     G+      +HA + + G+  N ++ +SL+  YT 
Sbjct: 11  LARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTA 70

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G+   A  +     +     W+ +I+G    G   E+   F  M  A   P  VT+ +V
Sbjct: 71  GGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSV 128

Query: 390 LCACSHS------GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           L AC         G+   GR+  +      GV+P ++    +VDM      +  A +  +
Sbjct: 129 LSACGKGTRDVLLGMQVHGRVVGS------GVLPDLRVENALVDMYAECADMGSAWKVFD 182

Query: 444 KMPIVPGASVWGALL 458
            M +    S W +LL
Sbjct: 183 GMQVRSVVS-WTSLL 196


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/647 (41%), Positives = 381/647 (58%), Gaps = 50/647 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           LI    +  +L+QIH Q+ R  +F      ++  + C+  + +S++YA  +F +    N 
Sbjct: 48  LIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCS--SLNSVDYAISIFQRFELKNS 105

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           Y +N LIR  + ++   +S + F  L+      P+  TFPFV+K+AA L    VG+A+H 
Sbjct: 106 YLFNALIRGLAENSR-FESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHC 164

Query: 164 MVIKSSFEDDLFIS-----------------------------------NSLIHFYAICG 188
            ++K   E D F+                                    N LIH Y   G
Sbjct: 165 GILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMG 224

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           DL  A  +F  + KKD  SWNS+I+GF++ G   +A EL+ +M  +NV    V+   +++
Sbjct: 225 DLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNV----VSWTTMVN 280

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
             ++  D      P +AL  F    L +   P+++T VS LSACA++GA+D G++IH  +
Sbjct: 281 GFSQNGD------PEKALETFF-CMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYL 333

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
              G KLN  + T+L+DMY KCGN++ A +VFH  K + + +WS MI G+A++G  R+AL
Sbjct: 334 SGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKAL 393

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
             F  M+    KP++V F  VL ACSHSG V+EG  FF+ M   Y + P +KHYT +VDM
Sbjct: 394 QYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDM 453

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
           LGRAG LDEA++FI  MPI P   VWGAL  AC+ H+NVE+AE A   LL+LEP++ G+ 
Sbjct: 454 LGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSY 513

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           V LSN YA  G+WD+   +R  MR  G  K+PG S IEV+ ++H+F+AG+++H    EIY
Sbjct: 514 VFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIY 573

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
           SKLDEI A  +  GY      +L  +EEE  +E+AL  HSE+LA+A+G++S  P   +RI
Sbjct: 574 SKLDEISASAREKGYTKEIECVLHNIEEE-EKEEALGYHSEKLALAFGIVSTRPGTTVRI 632

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VKNLRVC DCH+  K  SK+  REI+LRD  RFHHF  G CSC DYW
Sbjct: 633 VKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/618 (39%), Positives = 383/618 (61%), Gaps = 13/618 (2%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  +L+      K+++QIH ++   G   D +         AL     L+YA ++ D+ 
Sbjct: 7   HPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRS 66

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRV 157
            +P L+  N++IRA+  S  P +SF  + +++ +     P+ +T  F+++A   L     
Sbjct: 67  EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +HGM I+  F++D  +   LI  YA  G L   + VF  I   D V   +M++   +
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACAR 186

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A +L+  M     + D +   A++S  A+  +        EAL++FH +QL + 
Sbjct: 187 CGDVVFARKLFEGMP----ERDPIAWNAMISGYAQVGE------SREALNVFHLMQL-EG 235

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V  +    +SVLSAC QLGA+D G   H+ +++  IK+   L T+L+D+Y KCG+++KA+
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           EVF  ++ ++V+ WS+ + G AM G G + L+LFS M++  V PNAVTF +VL  CS  G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            VDEG+  F+ M   +G+ P ++HY C+VD+  RAG L++AV  I++MP+ P A+VW +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L A ++++N+EL   A   +LELE  NHGA VLLSNIYA +  WDNVS +R+ M+  G++
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K+PGCS +EVNGE+H+F  G+ SHP   +I +   +I  RL+  GY  + + ++  ++EE
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E AL LHSE+ AIA+G++S++   PIRIVKNLRVCGDCH V+ +ISK++NREI++RD
Sbjct: 536 E-KEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRD 594

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF+ G+CSC  +W
Sbjct: 595 RNRFHHFKDGHCSCNGFW 612


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/683 (37%), Positives = 386/683 (56%), Gaps = 71/683 (10%)

Query: 40  PVFSLIKQCKN--------IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYA 91
           PVFS   + KN          QLK IH ++LR  L  D Y  + L   CAL  F S  Y+
Sbjct: 10  PVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLN-LILCCAL-DFGSTNYS 67

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           + +F Q+ +PN++ WNT+IR   S      +  ++  +     + PN FT PFV+KA AR
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACAR 126

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            +  R+G  IH +++K+ ++ D+F+  SL+  Y  C +   A  VF  I  K+VVSW ++
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS---- 267
           I+G++  G F +AI  ++++    +KPD  ++V VL+ACA+  D   G W +  +S    
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 268 ---IF-----------------HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
              +F                   L  S     D  ++ +++   A  G     + +  +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 308 MKKQGIKLNCY-----------------------------------LTTSLIDMYTKCGN 332
           M+ + +K +CY                                   L T+LIDMY+KCG+
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + +A E+F  +K +D  VW+ M+ G +M G  +    LFS +++  ++P+  TF  +LC 
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+H G V+EGR FFN M+ V+ + P ++HY CMVD+LGRAGLL+EA + I  MP+ P A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VWGALLG CK+H++  LAE     L+ELEP N G  V LSNIY+   +W+   ++R  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              ++K   CS IE++G +H+FL G+ SH L ++IY+KLDE+   LK+ G+VP    +L 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            +EEE+ +E  L  HSE+LA+A+GLI+  P+  IR+VKNLRVCGDCH   KLISK+  RE
Sbjct: 607 DIEEEE-KEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD  RFH F  G+CSC DYW
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/675 (39%), Positives = 381/675 (56%), Gaps = 66/675 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L++         Q+H   LR GL      AS       L  F  +  A  +FD++P+ ++
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYL-RFGRVAEAYRVFDEMPERDV 133

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
             WN ++     +     +  +  ++V       +  T   V+     L    +   +H 
Sbjct: 134 PAWNAMLSGLCRNTRAADAVTLLGRMV-GEGVAGDAVTLSSVLPMCVVLGDRALALVMHV 192

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
             +K     +LF+ N+LI  Y   G L  A+ VF  +  +D+V+WNS+IS   QGG    
Sbjct: 193 YAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAA 252

Query: 224 AIELYREMEMENVKPDE---VTMVAVLSACA------------KKRDLEFG--------- 259
           A+EL+  M    V PD    V++ + ++ C             ++R  + G         
Sbjct: 253 AVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMV 312

Query: 260 -------------------------RW------------PNEALSIFHELQLSKNVNPDE 282
                                     W             NEA+ I++++   + + P +
Sbjct: 313 DMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQ 372

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            TFVSVL A + LG +  G+++HA   K G+ L+ Y+TT LID+Y KCG L +A+ +F  
Sbjct: 373 GTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEH 432

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +  R    W+ +IAG  ++G G +AL LFS+MQ+ ++KP+ VTF ++L ACSH+GLVD+G
Sbjct: 433 MPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQG 492

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           R FF+ M+ VYG+VP  KHYTCMVDMLGRAG LDEA EFI+ MPI P ++VWGALLGAC+
Sbjct: 493 RSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACR 552

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           IH NVE+ + A  +L EL+PEN G  VL+SN+YAK GKWD V  +R  +R   L+K PG 
Sbjct: 553 IHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGW 612

Query: 523 SSIEVNGEIHKFLAGESS--HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           SS+EV G +  F +G  +  HP  +EI   L +++A++KS GYVP+ S +LQ V EED +
Sbjct: 613 SSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDV-EEDEK 671

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           EQ LN HSERLAIA+G+I+  P  P+ I KNLRVCGDCH+  K ISK+  REI++RD  R
Sbjct: 672 EQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANR 731

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF+ G+CSC D+W
Sbjct: 732 FHHFKDGHCSCGDFW 746



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 43/321 (13%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S + QC +    K +H  + R G       A            S ++ A+++FD +P  +
Sbjct: 277 SAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDM-YAKMSKIDAAQKVFDNLPDRD 335

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           + +WNTLI  Y  +    ++  I+  +  +    P + TF  V+ A + L   + G  +H
Sbjct: 336 VVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMH 395

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            + IK+    D++++  LI  YA CG L  A  +F  + ++    WN++I+G    G   
Sbjct: 396 ALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGA 455

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           KA+ L+ +M+ E +KPD VT V++L+AC+    ++ GR      S F  +Q    + P  
Sbjct: 456 KALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGR------SFFDLMQTVYGIVPIA 509

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
             +                                   T ++DM  + G LD+A E   +
Sbjct: 510 KHY-----------------------------------TCMVDMLGRAGQLDEAFEFIQS 534

Query: 343 VKSR-DVFVWSTMIAGFAMYG 362
           +  + D  VW  ++    ++G
Sbjct: 535 MPIKPDSAVWGALLGACRIHG 555


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/683 (37%), Positives = 386/683 (56%), Gaps = 71/683 (10%)

Query: 40  PVFSLIKQCKN--------IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYA 91
           PVFS   + KN          QLK IH ++LR  L  D Y  + L   CAL  F S  Y+
Sbjct: 10  PVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLN-LILCCAL-DFGSTNYS 67

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           + +F Q+ +PN++ WNT+IR   S      +  ++  +     + PN FT PFV+KA AR
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACAR 126

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            +  R+G  IH +++K+ ++ D+F+  SL+  Y  C +   A  VF  I  K+VVSW ++
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS---- 267
           I+G++  G F +AI  ++++    +KPD  ++V VL+ACA+  D   G W +  +S    
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 268 ---IF-----------------HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
              +F                   L  S     D  ++ +++   A  G     + +  +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 308 MKKQGIKLNCY-----------------------------------LTTSLIDMYTKCGN 332
           M+ + +K +CY                                   L T+LIDMY+KCG+
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + +A E+F  +K +D  VW+ M+ G +M G  +    LFS +++  ++P+  TF  +LC 
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+H G V+EGR FFN M+ V+ + P ++HY CMVD+LGRAGLL+EA + I  MP+ P A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VWGALLG CK+H++  LAE     L+ELEP N G  V LSNIY+   +W+   ++R  M+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              ++K   CS IE++G +H+FL G+ SH L ++IY+KLDE+   LK+ G+VP    +L 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            +EEE+ +E  L  HSE+LA+A+GLI+  P+  IR+VKNLRVCGDCH   KLISK+  RE
Sbjct: 607 DIEEEE-KEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD  RFH F  G+CSC DYW
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/663 (39%), Positives = 390/663 (58%), Gaps = 69/663 (10%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY 71
           L T V S  R PN    +   G+ H    +FSL + C ++ QLKQ+H   LRT     P 
Sbjct: 83  LKTLVFS--RIPNLKYGSSTAGNHHQR--IFSLAETCSDMSQLKQLHAFTLRTTY---PE 135

Query: 72  SASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQSFMIF 126
             + LF    +     +FS + YA  +FD I   + + WNTLIRA +   +   ++FM++
Sbjct: 136 EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 195

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
            +++      P++ TFPFV+KA A +  F  G+ +H  ++K  F  D++++N LIH Y  
Sbjct: 196 RKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGS 255

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG L +A  VF  + ++ +VSWNSMI   V+                             
Sbjct: 256 CGCLDLARKVFDEMPERSLVSWNSMIDALVR----------------------------- 286

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                      FG + + AL +F E+Q  ++  PD +T  SVLSACA LG++ +G   HA
Sbjct: 287 -----------FGEY-DSALQLFREMQ--RSFEPDGYTMQSVLSACAGLGSLSLGTWAHA 332

Query: 307 KMKKQ---GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
            + ++    + ++  +  SLI+MY KCG+L  A +VF  ++ RD+  W+ MI GFA +G 
Sbjct: 333 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGR 392

Query: 364 GREALDLFSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
             EA++ F RM + +  V+PN+VTF  +L AC+H G V++GR +F+ M   Y + P ++H
Sbjct: 393 AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEH 452

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLEL 480
           Y C+VD++ RAG + EA++ +  MP+ P A +W +LL AC K   +VEL+E    +++  
Sbjct: 453 YGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGT 512

Query: 481 EPENH-------GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
           + +N        GA VLLS +YA   +W++V  +RK M   G++KEPGCSSIE+NG  H+
Sbjct: 513 KEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHE 572

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL-LQLVEEEDVQEQALNLHSERLA 592
           F AG++SHP  K+IY +L  I  RL+S GY+P+RS   L     +  +E +L LHSERLA
Sbjct: 573 FFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLA 632

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GLI++ P  PIRI KNLRVC DCH V KLISK++N EI++RDR RFHHF+ G+CSC+
Sbjct: 633 IAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCL 692

Query: 653 DYW 655
           DYW
Sbjct: 693 DYW 695


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/616 (41%), Positives = 371/616 (60%), Gaps = 59/616 (9%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASK----LFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           ++ Q  Q+H Q+L++    DP   ++    LFT  AL     L YA  + + +   N + 
Sbjct: 5   SLSQAMQLHAQILKSP---DPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYN--SPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            NT+IRAYS + +P Q+  +FL ++    SP  P++FT+PF++K+ ARL Q RVG+ +HG
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPR-PDKFTYPFLLKSCARLKQPRVGKQLHG 120

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           ++ KS  E D ++SN LIH Y+ CG    AY VF  +  +DVVSW SMI GFV     ++
Sbjct: 121 LIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDD---DR 177

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+E                                      A+ +F E+ +   V P+E 
Sbjct: 178 ALE--------------------------------------AIRLFEEM-VEDGVEPNEA 198

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T VSVL ACA  GA+ +G ++   ++++ I L   + T+LIDMY KCG++  A +VF  +
Sbjct: 199 TVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGI 258

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            ++DVF W+ MI+G A +G   EA+ LF +M+   ++P+  T T VL AC ++G   EG 
Sbjct: 259 VNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGF 318

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +FN M   YG+ P ++HY CMVD+L R G LDEA EFI KMPI P   +W  L+ A K+
Sbjct: 319 AYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKV 378

Query: 464 HENVELAEYACSH--LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           H +++ +E       LL+++ ++ G+ VLL N+YA  GKW + +++R+ M   GL K PG
Sbjct: 379 HGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPG 438

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
           CS IEV+G +H+F AG+S H   ++IY+KLDE+  RLK+ GY P  S +L    E D +E
Sbjct: 439 CSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLL---EIDNKE 495

Query: 582 QALNL--HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +A  L  HSE+LA+A+GLI   P   IRIVKNLR C DCH+V KLISK+Y ++I++RDR 
Sbjct: 496 KAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRI 555

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF  G+CSC DYW
Sbjct: 556 RFHHFINGDCSCKDYW 571


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/661 (38%), Positives = 394/661 (59%), Gaps = 34/661 (5%)

Query: 10  ETLSTPVISLPRHPNPTTLTVNNGHQ---------------HHPHPVFSLIKQCKNIKQL 54
           +T+S+  I    HP+P ++   N                         SLI + K++  L
Sbjct: 4   QTMSSSSIFTASHPSPPSIFTTNRSSVLPSSSSTARTSDRFQEVERFASLIDKSKSVAHL 63

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
            QIH  +LR GL+ +P    KL    A      L+ +  +F+   +PN+++++ +I ++ 
Sbjct: 64  LQIHASLLRRGLYHNPILNFKLQRSYA--ALGRLDCSVFVFNTFDEPNVFSFSAIIHSHV 121

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S    ++F  + Q++ +    PN FTF  V+K+ +       G+ +H   IK     DL
Sbjct: 122 QSRLFDRAFGYYSQML-SCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDL 176

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           ++   L+  YA  GD+  A  +F  + ++ +VS  +M++ + + G  +KA  L+     E
Sbjct: 177 YVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLF-----E 231

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
            +K  +V    V+     +  +     PNE+L +F  + ++K + P+E T ++VLSAC Q
Sbjct: 232 GMKERDVVCWNVMIGGYAQSGV-----PNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQ 285

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           LGA++ G  IH+ ++ +GI++N ++ T+LIDMY+KCG+L+ A  VF  ++ +DV  W++M
Sbjct: 286 LGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSM 345

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G+AM+G  + AL LF  M E   KP  +TF  +L AC H GLV+EGR FF  M   YG
Sbjct: 346 IVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYG 405

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++HY CMV++LGRAG L+EA   ++ M I     +WG LLG C++H N++L E   
Sbjct: 406 IEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIA 465

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             L++ +  N G  VLLSN+YA TG W+ V+++R  M+  G++KE GCSSIEV+ ++H+F
Sbjct: 466 KFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEF 525

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           +AGE  HP  KEIY  L+EI + LK+ GY P    +L  + EE  +EQ+L +HSE+LAIA
Sbjct: 526 VAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQ-KEQSLEVHSEKLAIA 584

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLIS +P   ++IVKNLRVC DCHTV K+IS++  R+I++RDR RFHHF  G CSC DY
Sbjct: 585 FGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDY 644

Query: 655 W 655
           W
Sbjct: 645 W 645


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/612 (41%), Positives = 365/612 (59%), Gaps = 46/612 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C ++   K+IH  +L+ G  +D + A+ L        F  +  AR++FD +P  + 
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVH--MYSRFGLVGDARKLFDDMPARDR 60

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +WN +I  Y  +    ++  I  ++        +  T   V+   A++     G+ IH 
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKM-DAITVASVLPVCAQVGDILSGKLIHL 119

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            VIK   E +LF+SN+LI+ YA  G L  A  VF ++  KDVVSWN++I+G+ Q G   +
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASE 178

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AIE+Y  ME                                     HE      + P++ 
Sbjct: 179 AIEVYLLMEE------------------------------------HE-----EIIPNQG 197

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T+VS+L A + +GA+  G++IH ++ K  +  + ++ T LIDMY KCG LD A+ +F+ V
Sbjct: 198 TWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQV 257

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             ++   W+ MI+ + ++G G +AL+LF  M+  +VKP+ +TF ++L ACSHSGLV + +
Sbjct: 258 PRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQ 317

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             FN ME  YG+ P +KHY CMVD+ GRAG L+ A  FI+KMPI P AS WGALL AC+I
Sbjct: 318 WCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRI 377

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H N+EL ++A   L E++ EN G  VLLSNIYA  GKW+ V ++R   R  GL+K PG S
Sbjct: 378 HGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWS 437

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
           SI +N ++  F  G  +HP C+EIY +L ++ +++K+ GYVP+   +LQ V EED +E  
Sbjct: 438 SIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDV-EEDEKEHI 496

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L  HSERLAIAYG+IS  P  PIRI KNLRVCGDCHTV K IS +  REI++RD  RFHH
Sbjct: 497 LMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHH 556

Query: 644 FRGGNCSCMDYW 655
           F+GG CSC DYW
Sbjct: 557 FKGGTCSCGDYW 568



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 169/344 (49%), Gaps = 33/344 (9%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           V  +  Q  +I   K IH  +++ GL F+ + ++ L    A   F SL +A+++F  + +
Sbjct: 101 VLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYA--KFGSLGHAQKVFGLLIK 158

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WNTLI  Y+ +    ++  ++L +  +    PN+ T+  ++ A + +   + G  
Sbjct: 159 -DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR 217

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IHG VIK+    D+F+   LI  Y  CG L  A  +F  + +K+ V WN+MIS +   G 
Sbjct: 218 IHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGD 277

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL--------SIFH-- 270
            EKA+EL+REM+ E VKPD +T V++LSAC+    +   +W    +        S+ H  
Sbjct: 278 GEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYG 337

Query: 271 ----------ELQLSKN------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                     EL+++ N      + PD   + ++L+AC   G +++G     ++ +   +
Sbjct: 338 CMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSE 397

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV---WSTMI 355
            N      L ++Y   G  +   +V    + R +     WS++I
Sbjct: 398 -NVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSII 440


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/657 (38%), Positives = 378/657 (57%), Gaps = 41/657 (6%)

Query: 35  QHHPHPVFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY 90
           Q  P     L+ Q      +I+ L+ +H++++   L  +     KL    A  +   +  
Sbjct: 35  QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMR--AYASLKDVAS 92

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD+IP+ N+   N +IR+Y ++    +   +F  +       P+ +TFP V+KA +
Sbjct: 93  ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC-GCNVRPDHYTFPCVLKACS 151

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                 +G+ IHG   K      LF+ N L+  Y  CG L+ A  V   + ++DVVSWNS
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNS 211

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--------RDLEF--GR 260
           ++ G+ Q   F+ A+E+ REME   +  D  TM ++L A +          +D+ F  G+
Sbjct: 212 LVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGK 271

Query: 261 -----W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                W            P EA+ ++  ++ +    PD  +  SVL AC    A+ +G +
Sbjct: 272 KSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           IH  ++++ +  N  L  +LIDMY KCG L+KA +VF  +KSRDV  W+ MI+ +   G 
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           G +A+ LFS++Q++ + P+++ F   L ACSH+GL++EGR  F  M   Y + P ++H  
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 450

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMVD+LGRAG + EA  FI+ M + P   VWGALLGAC++H + ++   A   L +L PE
Sbjct: 451 CMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
             G  VLLSNIYAK G+W+ V+ +R  M+  GLKK PG S++EVN  IH FL G+ SHP 
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 570

Query: 544 CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV--- 600
             EIY +LD +V ++K  GYVP+    L  VEEED +E  L +HSE+LAI + L++    
Sbjct: 571 SDEIYRELDVLVKKMKELGYVPDSESALHDVEEED-KETHLAVHSEKLAIVFALMNTKEE 629

Query: 601 --EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             + +  IRI KNLR+CGDCH  AKLIS++ +REI++RD  RFH FR G CSC DYW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/539 (46%), Positives = 339/539 (62%), Gaps = 17/539 (3%)

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
            S  IFL +V  S + PN +TF FV KA    +    G+ I    IK   E +LF++N++
Sbjct: 14  NSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAM 73

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           I  YA  G +  A  VF     +D+ SWN MI G+V  G   +A E++ EM   +V    
Sbjct: 74  IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDV-VSW 132

Query: 241 VTMVA--VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
            T++A  V   C K           EAL +FHE+ L     P+EFT  S L+ACA L A+
Sbjct: 133 TTIIAGYVQVGCFK-----------EALDLFHEM-LQTGPPPNEFTLASALAACANLVAL 180

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD--VFVWSTMIA 356
           D G  IH  + K  IK+N  L  SL+DMY KCG +D A +VFH        V+ W+ MI 
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 240

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           G+AM+G  +EA+DLF +M+  KV PN VTF  +L ACSH  LV+EGR +F  M   YG+ 
Sbjct: 241 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIE 300

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P ++HY CMVD+LGR+GLL EA E +  MP+ P A++WGALLGAC+IH+++E  +     
Sbjct: 301 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 360

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           + EL+ ++ G  VLL+N+Y+ +G+WD    +R+ + VSG KK PGCSSIE+NG  H+FL 
Sbjct: 361 IKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLV 420

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           G+ SHP  K++Y  LDE+  +LK+ GYVP    +L  +++E+ +E AL+ HSE+LAIA+G
Sbjct: 421 GDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFG 480

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LI+  P   IRIVKNLRVC DCH   K ISK+Y REI++RDR R+HHF+ G CSC DYW
Sbjct: 481 LINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 3/172 (1%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A+EMFD++ + ++ +W T+I  Y       ++  +F +++   P  PNEFT    + A A
Sbjct: 117 AKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACA 175

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSW 208
            LV    G+ IH  + KS  + +  +  SL+  YA CG++  A  VF      K  V  W
Sbjct: 176 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 235

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           N+MI G+   G  ++AI+L+ +M++E V P++VT VA+L+AC+  + +E GR
Sbjct: 236 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGR 287


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/672 (38%), Positives = 394/672 (58%), Gaps = 56/672 (8%)

Query: 34  HQHHPHPVFSL----------IKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCAL 82
           H  H H V +L          ++ C ++  LK IH+ +   G L   P+  ++L      
Sbjct: 11  HLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLII--LY 68

Query: 83  GTFSSLEYAREMFDQ--------IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
                L  AR +FD            PN +  NT++RAY+++    ++  +++ +     
Sbjct: 69  SKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM-QRMG 127

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
              N FT+PFV+K  A  +    G+ +HG V+++ F  DLF+  +L+  YA CG++  A+
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            VF  +  +DVV W +MI+ + Q     KA+ L+R+M+ E    DE+T ++V SA  +  
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247

Query: 255 D---------LEFGR--------W------------PNEALSIFHELQLSKNVNPDEFTF 285
           D         L F R        W            P +ALS+F+++Q S+  +P+  T 
Sbjct: 248 DGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE-CDPNPVTA 306

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK- 344
           + ++SAC+ LG+  +G ++H  +    + ++  L  +++DMY KCG+LD A+E+F+  + 
Sbjct: 307 LIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCEL 366

Query: 345 -SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RDV  W+ +I+G+ ++G G+EAL+LFSRMQ   V+PN +TFT++L ACSH+GL+DEGR
Sbjct: 367 GERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 426

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             F  M  +  V P +KHY CMVDMLGRAG L+EA   I+K+P  P   VWGALL AC+I
Sbjct: 427 KCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 485

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H N EL E A ++L +LEPE+ G  VL+SNIYA + KW  V  +R++M+  GLKK    S
Sbjct: 486 HGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFS 545

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            IE   E+H F   + S P  +E+Y K++ +   +K  GYVP+ S +L  VE ED +E  
Sbjct: 546 VIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPED-KEHL 604

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           LN HSE+LA+A+G++ ++   PI++ KNLRVC DCH   K IS +Y R+I++RD  RFHH
Sbjct: 605 LNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHH 664

Query: 644 FRGGNCSCMDYW 655
           F+GG CSC DYW
Sbjct: 665 FQGGRCSCGDYW 676


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/645 (39%), Positives = 377/645 (58%), Gaps = 21/645 (3%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQH--HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           ST + ++P  P   +    +   H    + +  LI + K I  L QIH  + R GL   P
Sbjct: 3   STTLFTIPPSPATGSPPTTSTTHHFISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHP 62

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
               KL    A  +   L+Y+  +F +   P+++ W  +I  ++      Q+   + Q++
Sbjct: 63  ILNFKLQRSYA--SLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQML 120

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
                 PN FTF  ++K    L     G+A+H   +K  F+ DL++   L+  YA  GD+
Sbjct: 121 TQGVE-PNAFTFSSILK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDV 175

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             A  +F  + +K +VS  +M++ + + G  + A  L+  ME    + D V    ++   
Sbjct: 176 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME----ERDGVCWNVMIDGY 231

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
            +         PNEAL +F  + L     P+E T +SVLSAC QLGA++ G  +H+ ++ 
Sbjct: 232 TQNG------MPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 284

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            GI+ N ++ T+L+DMY+KCG+L+ A  VF  +  +DV  W++MI G+AM+G  +EAL L
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 344

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F  M    + P  +TF  +L AC HSG V EG   FN+M+  YG+ P ++HY CMV++LG
Sbjct: 345 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 404

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG +++A E ++ M I P   +WG LLGAC++H  + L E     L++    N G  +L
Sbjct: 405 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 464

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           LSNIYA  G WD V+ LR  M+ SG+KKEPGCSSIEVN ++H+FLAG  +HP  KEIY  
Sbjct: 465 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMM 524

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           L+EI   LKS GY P    +L  + E + +E++L +HSE+LAIA+GLI+ +P   I+IVK
Sbjct: 525 LEEINGWLKSHGYTPQTDIVLHDIGETE-KERSLEVHSEKLAIAFGLINTQPGTTIKIVK 583

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLRVC DCH V KLISK+  R+I++RDR RFHHF  G+CSC DYW
Sbjct: 584 NLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/555 (43%), Positives = 353/555 (63%), Gaps = 19/555 (3%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF----RVGQAIH 162
           + LIRA++SS  P  +  ++  L+  +  FP   T P ++K+ A         R+  A+H
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLI-RAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVH 115

Query: 163 GMVIKSSFEDDLFISNSLIHFYA-ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
              ++      L ++N+LI  +A + G LA A+ +       D  ++N++I+   + G  
Sbjct: 116 AHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRV 175

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
             A  L+ EM   N     V+  A+++   +  D   GR   EAL +F ++Q ++ V PD
Sbjct: 176 ADARSLFDEMPERNA----VSWSAMVNGYVQAGD---GR---EALGVFSQMQ-AQGVRPD 224

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +   V VL+ACAQLGA++ G  +H  +K   I++  +L T+L+DMY KCG +   +EVF 
Sbjct: 225 DTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFE 284

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K ++V  W+TMI G AM+G G ++L LFS+M+ + VKP+ + F   LCAC+H+GLVD+
Sbjct: 285 GMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDK 344

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR  FN M   YG+ P ++HY CMVD+L R GLL EA + +EKMP+ P A +WGAL+  C
Sbjct: 345 GRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGC 404

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + H+NVELAEY   H +ELEP+  GA VLL NIY+ +G+  +  E+R  MR  G++K PG
Sbjct: 405 RFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPG 464

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQ 580
           CS++E+ G IH+F+ G+ SHP  K+I +K  EI +R++   GYVP++  +L  +EEE++ 
Sbjct: 465 CSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEM- 523

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E AL+ HSE+LAIA+ LIS E   PIRIVKNLRVC DCH V KLISK+Y REI++RDR R
Sbjct: 524 ESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTR 583

Query: 641 FHHFRGGNCSCMDYW 655
           FH F+ G CSC DYW
Sbjct: 584 FHLFKDGTCSCKDYW 598



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 3/200 (1%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           +LRT    D  + + L T  A      +  AR +FD++P+ N  +W+ ++  Y  + +  
Sbjct: 150 LLRTSAAVDASTFNTLITAHARA--GRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGR 207

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++  +F Q+       P++     V+ A A+L     G+ +HG +  ++    +F+  +L
Sbjct: 208 EALGVFSQMQAQG-VRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTAL 266

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  YA CG++ +   VF  +  K+V++W +MI G    G    ++ L+ +ME   VKPD+
Sbjct: 267 VDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDD 326

Query: 241 VTMVAVLSACAKKRDLEFGR 260
           +  +  L AC     ++ GR
Sbjct: 327 IAFIGALCACTHTGLVDKGR 346


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/623 (39%), Positives = 372/623 (59%), Gaps = 27/623 (4%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFD 96
           SL+  C   + L   ++IH+ +   GL  D   A+ L T    C     + ++ ARE FD
Sbjct: 285 SLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKC-----NCIQDARETFD 339

Query: 97  QIPQPNLYTWNTLIRAYSSSA----EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++ + ++ +W+ +I  Y+ S     E +      L+ +     FPN+ TF  ++KA +  
Sbjct: 340 RMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVH 399

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ IH  + K  FE D  +  ++ + YA CG +  A  VF  +  K+VV+W S++
Sbjct: 400 GALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLL 459

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           + +++ G    A +++ EM   NV    V+   +++  A+  D+       +   +   +
Sbjct: 460 TMYIKCGDLTSAEKVFSEMSTRNV----VSWNLMIAGYAQSGDIA------KVFELLSSM 509

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           ++ +   PD  T +S+L AC  L A++ G  +HA+  K G++ +  + TSLI MY+KCG 
Sbjct: 510 KV-EGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGE 568

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + +A  VF  + +RD   W+ M+AG+  +G G EA+DLF RM + +V PN +TFT V+ A
Sbjct: 569 VTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISA 628

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C  +GLV EGR  F  M+  + + PG +HY CMVD+LGRAG L EA EFI++MP  P  S
Sbjct: 629 CGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDIS 688

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VW ALLGACK H+NV+LAE+A  H+L LEP N    V LSNIYA+ G+WD+ +++RK M 
Sbjct: 689 VWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMD 748

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             GLKK+ G SSIE++G IH F+A + +HP    I+++L+ +   +K  GY P+   +L 
Sbjct: 749 DKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLH 808

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            V+E   +E+AL  HSE+LAIAYGL+   P  PIRI+KNLRVCGDCHT  K ISK+  RE
Sbjct: 809 DVDEVQ-KERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKRE 867

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I+ RD  RFH+F+ G CSC D+W
Sbjct: 868 IVARDANRFHYFKNGTCSCGDFW 890



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 239/524 (45%), Gaps = 62/524 (11%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIP 99
           +I+ C  +++    K +H Q+   GL  D Y  + L       G  +S+E   ++F ++ 
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVE---QVFRRMT 140

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ TW+++I AY+ +  P ++F  F + + ++   PN  TF  ++KA          +
Sbjct: 141 LRDVVTWSSMIAAYAGNNHPAKAFDTF-ERMKDANIEPNRITFLSILKACNNYSMLEKAR 199

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH +V  S  E D+ ++ +LI  Y+ CG++++A  +F  + +++VVSW ++I    Q  
Sbjct: 200 EIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHR 259

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A ELY +M    + P+ VT V++L++C     L  GR                   
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR------------------- 300

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                  +IH+ + ++G++ +  +  +LI MY KC  +  A E 
Sbjct: 301 -----------------------RIHSHISERGLETDVVVANALITMYCKCNCIQDARET 337

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGC-GREALD----LFSRMQEAKVKPNAVTFTNVLCACS 394
           F  +  RDV  WS MIAG+A  G   +E+LD    L  RM+   V PN VTF ++L ACS
Sbjct: 338 FDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACS 397

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             G +++GR    ++  V G        T + +M  + G + EA +   KM        W
Sbjct: 398 VHGALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAW 455

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL       ++  AE   S   E+   N  +  L+   YA++G    V EL   M+V 
Sbjct: 456 ASLLTMYIKCGDLTSAEKVFS---EMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVE 512

Query: 515 GLKKEPGC--SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           G + +     S +E  G +     G+  H    ++  + D +VA
Sbjct: 513 GFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVA 556



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 185/427 (43%), Gaps = 91/427 (21%)

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
           A  ++  +  L ++       N  T+  +I+  A+L +F  G+ +H  + +     D+++
Sbjct: 56  AGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYL 115

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            NSLI+FY+  GD+A    VF  +  +DVV+W+SMI+ +       KA + +  M+    
Sbjct: 116 GNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK---- 171

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                                                   N+ P+  TF+S+L AC    
Sbjct: 172 --------------------------------------DANIEPNRITFLSILKACNNYS 193

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            ++   +IH  +K  G++ +  + T+LI MY+KCG +  A E+F  +K R+V  W+ +I 
Sbjct: 194 MLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQ 253

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC----------------SHSGL-- 398
             A +    EA +L+ +M +A + PNAVTF ++L +C                S  GL  
Sbjct: 254 ANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 313

Query: 399 -----------------VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL-----LD 436
                            + + R  F++M         V  ++ M+    ++G      LD
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMSK-----RDVISWSAMIAGYAQSGYQDKESLD 368

Query: 437 EAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL-VLLS 492
           E  + +E+M    + P    + ++L AC +H  +E      + + ++  E+  +L   + 
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIF 428

Query: 493 NIYAKTG 499
           N+YAK G
Sbjct: 429 NMYAKCG 435


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/678 (37%), Positives = 391/678 (57%), Gaps = 75/678 (11%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+K C    ++K+ K+IH  ++ +G  ++ ++ +    ++  C       +  A  MFD+
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKC-----RQINDAYNMFDR 90

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L  WNT+I  Y+ +     + M+ L++     + P+  T   ++ A A     R+
Sbjct: 91  MPERDLVCWNTMISGYAQNGFAKVALMLVLRM-SEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G A+HG V+++ FE  + +S +L+  Y+ CG +++A  +F  +  + VVSWNSMI G+VQ
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 218 GGFFEKAIELYREMEMENVKPDEV------------------------------------ 241
            G  E A+ ++++M  E V+P  V                                    
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSV 269

Query: 242 --TMVAVLSACAKK----------RDLEFGRWP------------NEALSIFHELQLSKN 277
             +++++ S C +           R+     W             NEAL+ F E+Q S+N
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQ-SRN 328

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + PD FT VSV+ A A+L        IH  + ++ +  N ++ T+L+DMY KCG +  A 
Sbjct: 329 IKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTAR 388

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           ++F  + +R V  W+ MI G+  +G G+ +++LF  M++  +KPN +TF   L ACSHSG
Sbjct: 389 KLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSG 448

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG  FF  M+  YG+ P + HY  MVD+LGRAG L++A +FI+KMPI PG +V+GA+
Sbjct: 449 LVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAM 508

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACKIH+NV+L E A   + +L P++ G  VLL+NIYA    W  V+++R  M  SGL+
Sbjct: 509 LGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQ 568

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGCS +E+  E+H F +G +SHP  K+IYS L+ +V  +++ GYVP+ + +  +  E+
Sbjct: 569 KTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSIHDV--ED 626

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           DV+ Q LN HSE+LAIA+GL++     PI I KNLRVCGDCH   K IS +  REI++RD
Sbjct: 627 DVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRD 686

Query: 638 RYRFHHFRGGNCSCMDYW 655
            +RFH F+ G CSC DYW
Sbjct: 687 MHRFHLFKDGVCSCGDYW 704



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 157/337 (46%), Gaps = 44/337 (13%)

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +++ Y+ S+    +   F ++ ++S   P  + F +++K        + G+ IHG VI S
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVR-PVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F  +LF    +++ YA C  +  AY +F  + ++D+V WN+MISG+ Q GF + A+ L 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
             M  E  +PD +T+V++L A A  R L                                
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLR------------------------------- 148

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
                      IG+ +H  + + G +    ++T+L+DMY+KCG++  A  +F  +  R V
Sbjct: 149 -----------IGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTV 197

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W++MI G+   G    A+ +F +M +  V+P  VT    L AC+  G ++ G+ F ++
Sbjct: 198 VSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGK-FVHK 256

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +     +   V     ++ M  +   +D A +  + +
Sbjct: 257 LVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL 293


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/649 (38%), Positives = 379/649 (58%), Gaps = 58/649 (8%)

Query: 8   HMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF 67
           H ET + P+     +PNP            P+P+  LI +C + ++L QI    +++   
Sbjct: 14  HAETFTKPLKIDTVNPNP------------PNPIL-LISKCNSERELMQIQAYAIKSHQE 60

Query: 68  FDPYSASKLFTPCALG-TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF 126
            D    +KL   C    T SS+ YAR +FD + +P++  +N++ R YS S  P++ F +F
Sbjct: 61  -DVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLF 119

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           ++++ +    P+ +TFP ++KA A       G+ +H + +K   +D++++  +LI+ Y  
Sbjct: 120 VEILEDD-LLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTE 178

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           C D+  A CVF  I +  VV +N+MI+G+ +                             
Sbjct: 179 CEDVDAARCVFDRIVEPCVVCYNAMITGYAR----------------------------- 209

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                + R       PNEALS+F E+Q  KN+ P+E T +SVLS+CA LG++D+G  IH 
Sbjct: 210 -----RNR-------PNEALSLFREMQ-GKNLKPNEITLLSVLSSCALLGSLDLGKWIHE 256

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
             KK G      + T+LIDM+ KCG+LD A+ +F  ++ +D   WS MI  +A +G    
Sbjct: 257 YAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAEN 316

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           ++ +F RM+   V+P+ +TF  +L ACSH+GLV+EGR +F+ M   +G+VP +KHY  MV
Sbjct: 317 SMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMV 376

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+LGRAG L++A EFI+K+PI P   +W  LL AC  H N+ELAE     +LEL+  + G
Sbjct: 377 DLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGG 436

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             V+LSN+YA+  KW+ V  LRK M+     K PGCSSIEVN  +H+F +G+       +
Sbjct: 437 DYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 496

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           ++  LDE+V  LK  GYVP+ S ++     +  +E  L  HSE+LAIA+GL++  P   I
Sbjct: 497 LHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTI 556

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           R+VKNLRVC DCH+ AKLIS ++ R+++LRD  RFHHF  G CSC D+W
Sbjct: 557 RVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/617 (39%), Positives = 375/617 (60%), Gaps = 16/617 (2%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+   + +  +   ++ +H  +++ G+  + + A+ L T  A         AR +  +  
Sbjct: 48  PLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT--AYAAGGDGAAARALLSERE 105

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV-QFRVG 158
           +     WN LI  ++      ++   F+ +   +   P   T+  V+ A  +      +G
Sbjct: 106 RDTPVVWNALISGHNRCRRFGEACCSFVDMA-RAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +HG V+ S    DL + N+L+  YA C D+  A+ +F  +  + VVSW S++SG  + 
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  ++A +L+  M     + D V+  A++    +           EAL +F E+Q S NV
Sbjct: 225 GRVDEARDLFGRMP----ERDTVSWTAMIDGYVQAARFR------EALEMFREMQCS-NV 273

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           + DEFT VSV++ACAQLGA+++G  +   M +QGIK++ ++  +LIDMY+KCG++++AL+
Sbjct: 274 SADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALD 333

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RD F W+ +I G A+ G G EA+++F RM      P+ VTF  VL AC+H+GL
Sbjct: 334 VFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGL 393

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VD+GR FF  M   Y + P V HY C++D+ GRAG + EA++ I++MP+ P +++WG LL
Sbjct: 394 VDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLL 453

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            AC++H N E+ E     LL+++PEN     LLSNIYAK  +W++V  LR  +   G+KK
Sbjct: 454 AACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKK 513

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           EPGCS IE+NG IH+F+AG+ SHP+ KEIY KL+ I+  L + GY P+ + +   V EE 
Sbjct: 514 EPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEE- 572

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +++ L  HSE+LAIA+ L+S EP+  IRIVKNLR+C DCH   KLIS+LY RE+++RDR
Sbjct: 573 EKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDR 632

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFR G CSC DYW
Sbjct: 633 TRFHHFRHGFCSCKDYW 649



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 27/318 (8%)

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ +TFP ++KA AR       +A+H  V+K     +  ++ SL+  YA  GD A A  
Sbjct: 40  MPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARA 99

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR- 254
           +     +   V WN++ISG  +   F +A   + +M      P  VT V+VLSAC K   
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPD---EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
           D+  G          H   +   V PD   E   V + + CA    M+   ++   M+ +
Sbjct: 160 DVLLGMQ-------VHGRVVGSGVLPDLRVENALVDMYAECAD---MESAWKLFDGMQVR 209

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
            +       TSL+   T+ G +D+A ++F  +  RD   W+ MI G+      REAL++F
Sbjct: 210 SV----VSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMF 265

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----YTCMVD 427
             MQ + V  +  T  +V+ AC+  G ++ G     +   VY    G+K        ++D
Sbjct: 266 REMQCSNVSADEFTMVSVITACAQLGALEMG-----EWVRVYMSRQGIKMDAFVGNALID 320

Query: 428 MLGRAGLLDEAVEFIEKM 445
           M  + G ++ A++  + M
Sbjct: 321 MYSKCGSIERALDVFKDM 338



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 20/254 (7%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L++   PD +TF  +L A A+  +      +HA + K G+  N ++ TSL+  Y   G+ 
Sbjct: 35  LARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDG 94

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEAKVKPNAVTFTNVLC 391
             A  +    +     VW+ +I+G     C R  EA   F  M  A   P  VT+ +VL 
Sbjct: 95  AAARALLSERERDTPVVWNALISGHNR--CRRFGEACCSFVDMARAGAAPTPVTYVSVLS 152

Query: 392 ACSHS------GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           AC         G+   GR+  +      GV+P ++    +VDM      ++ A +  + M
Sbjct: 153 ACGKGTGDVLLGMQVHGRVVGS------GVLPDLRVENALVDMYAECADMESAWKLFDGM 206

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
            +    S W +LL        V+ A      + E +  +  A++   + Y +  ++    
Sbjct: 207 QVRSVVS-WTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMI---DGYVQAARFREAL 262

Query: 506 ELRKHMRVSGLKKE 519
           E+ + M+ S +  +
Sbjct: 263 EMFREMQCSNVSAD 276


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/673 (38%), Positives = 380/673 (56%), Gaps = 66/673 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C+ +   ++IH  + + G  +D + A+ L        F  +  AR +FD +P  ++
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIH--MYSRFGFVGIARSLFDDMPFRDM 238

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +WN +I     +    Q+  +  ++        +  T   ++   A+L        IH 
Sbjct: 239 GSWNAMISGLIQNGNAAQALDVLDEMRLEGINM-DSVTVASILPVCAQLGDISTATLIHL 297

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            VIK   E +LF+SN+LI+ YA  G+L  A  VF  +  +DVVSWNS+I+ + Q      
Sbjct: 298 YVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVT 357

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----------WPNEALSI----- 268
           A   + +M++  ++PD +T+V++ S  A+ RD +  R          W  EA+ I     
Sbjct: 358 ARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVM 417

Query: 269 ----------------------------------------------FHELQLSKNVNPDE 282
                                                         +  ++  + +  ++
Sbjct: 418 DMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQ 477

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T+VS+L+A A +GA+  G++IH  + K  + L+ ++ T LID+Y KCG L  A+ +F+ 
Sbjct: 478 GTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQ 537

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           V       W+ +I+   ++G G +AL LF  MQ+  VKP+ VTF ++L ACSHSGLVDEG
Sbjct: 538 VPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG 597

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           + FF+ M+  YG+ P +KHY CMVD+LGRAG L+ A +FI+ MP+ P AS+WGALLGAC+
Sbjct: 598 KWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACR 656

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           IH N+EL ++A   L E++ EN G  VLLSNIYA  GKW+ V ++R   R  GLKK PG 
Sbjct: 657 IHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGW 716

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           SSIEVN  +  F  G  SHP CKEIY++L  + A++KS GY+P+ S +LQ V EED +E 
Sbjct: 717 SSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDV-EEDEKEH 775

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSERLAIA+G+IS  P   IRI KNLRVCGDCH   K IS++  REI++RD  RFH
Sbjct: 776 ILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFH 835

Query: 643 HFRGGNCSCMDYW 655
           HF+ G CSC DYW
Sbjct: 836 HFKNGICSCGDYW 848



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/551 (25%), Positives = 251/551 (45%), Gaps = 84/551 (15%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL   C      K++H  ++ +G     + + +L    A  +   +  +R  FDQI + +
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYA--SLGDVSLSRGTFDQIQRKD 138

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +YTWN++I AY  +    ++   F QL+  + +  + +TFP V+KA   LV    G+ IH
Sbjct: 139 VYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIH 195

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             V K  F+ D+F++ SLIH Y+  G + +A  +F  +  +D+ SWN+MISG +Q G   
Sbjct: 196 CWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAA 255

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAK---------------KRDLEFGRWPNEAL- 266
           +A+++  EM +E +  D VT+ ++L  CA+               K  LEF  + + AL 
Sbjct: 256 QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALI 315

Query: 267 -------------SIFHELQLSKNVN------------------------------PDEF 283
                         +F ++ L   V+                              PD  
Sbjct: 316 NMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLL 375

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-YLTTSLIDMYTKCGNLDKALEVFHT 342
           T VS+ S  AQ         +H  + ++G  +    +  +++DMY K G +D A +VF+ 
Sbjct: 376 TLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNL 435

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDE 401
           +  +DV  W+T+I+G+   G   EA++++  M+E + +K N  T+ ++L A +H G + +
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495

Query: 402 GRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           G      +        V  G    TC++D+ G+ G L +A+    ++P    +  W A++
Sbjct: 496 GMRIHGHLIKTNLHLDVFVG----TCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAII 550

Query: 459 GACKIHENVELAEYACSHLLELEPE----NHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
               IH +    E A     E++ E    +H   + L +  + +G  D        M+  
Sbjct: 551 SCHGIHGH---GEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEY 607

Query: 515 GLK---KEPGC 522
           G+K   K  GC
Sbjct: 608 GIKPSLKHYGC 618



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 12/193 (6%)

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           FH  Q +KN   +E  F S+  +C +     +  ++HA +   G   + +++  L+++Y 
Sbjct: 66  FHWRQPAKN---EEIDFNSLFDSCTK---TLLAKRLHALLVVSGKIQSNFISIRLVNLYA 119

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR-MQEAKVKPNAVTFT 387
             G++  +   F  ++ +DV+ W++MI+ +   G  REA+D F + +   K + +  TF 
Sbjct: 120 SLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFP 179

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL AC    LVD GR     +  + G    V     ++ M  R G +  A    + MP 
Sbjct: 180 PVLKAC--QTLVD-GRKIHCWVFKL-GFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPF 235

Query: 448 VPGASVWGALLGA 460
               S W A++  
Sbjct: 236 RDMGS-WNAMISG 247


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/577 (41%), Positives = 366/577 (63%), Gaps = 16/577 (2%)

Query: 82  LGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
            G    +E AR +F+ +   + ++ +W+ ++  Y  +    ++ ++F+++   S    +E
Sbjct: 212 FGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEM-KGSGVAVDE 270

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
                 + A +R++   +G+ +HG+ +K   ED + + N+LIH Y+ CG++  A  +F  
Sbjct: 271 VVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDD 330

Query: 200 IGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
            G+  D++SWNSMISG+++ G  + A  L+  M     + D V+  A++S  A+      
Sbjct: 331 GGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP----EKDVVSWSAMISGYAQHECF-- 384

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
               +EAL++F E+QL   V PDE   VS +SAC  L  +D+G  IHA + +  +++N  
Sbjct: 385 ----SEALALFQEMQL-HGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVI 439

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L+T+LIDMY KCG ++ ALEVF+ ++ + V  W+ +I G AM G   ++L++F+ M++  
Sbjct: 440 LSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTG 499

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
             PN +TF  VL AC H GLV++GR +FN M   + +   +KHY CMVD+LGRAGLL EA
Sbjct: 500 TVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEA 559

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
            E I+ MP+ P  + WGALLGAC+ H + E+ E     L++L+P++ G  VLLSNIYA  
Sbjct: 560 EELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASK 619

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
           G W NV E+R  M   G+ K PGCS IE NG +H+FLAG+ +HP   +I   LD + A+L
Sbjct: 620 GNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKL 679

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K  GYVP  S +   ++EE+ +E AL  HSE+LA+A+GLI++ P  PIR+ KNLR+C DC
Sbjct: 680 KIEGYVPTTSEVSLDIDEEE-KETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDC 738

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           HTV KLISK ++R+I++RDR+RFHHF+ G CSCMD+W
Sbjct: 739 HTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 237/487 (48%), Gaps = 69/487 (14%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQP 101
           SL++ CK  +  KQ+ +Q + TGL  DPY+AS+L    +  T      Y+  +F+ +  P
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK-AAARLVQFRVGQA 160
           N +TWNT++RA+          ++  +L   S   P+ +T+P +++  AAR+ +F  G+ 
Sbjct: 68  NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFE-GRQ 126

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   + S F+ D+++ N+L++ YA+CG +  A  VF      D+VSWN++++G+VQ G 
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGE 186

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLS--ACAKK----------RDLEFGRWP------ 262
            E+A  ++  M   N      +M+A+     C +K          R+ +   W       
Sbjct: 187 VEEAERVFEGMPERNTIASN-SMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCY 245

Query: 263 ------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EAL +F E++ S  V  DE   VS LSAC+++  +++G  +H    K G++  
Sbjct: 246 EQNEMGEEALVLFVEMKGS-GVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDY 304

Query: 317 CYLTTSLIDMYT--------------------------------KCGNLDKALEVFHTVK 344
             L  +LI +Y+                                +CG++  A  +F+++ 
Sbjct: 305 VSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP 364

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR- 403
            +DV  WS MI+G+A + C  EAL LF  MQ   V+P+     + + AC+H   +D G+ 
Sbjct: 365 EKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKW 424

Query: 404 --MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
              + ++ +    V+      T ++DM  + G ++ A+E    M    G S W A++   
Sbjct: 425 IHAYISRNKLQVNVILS----TTLIDMYMKCGCVENALEVFYAME-EKGVSTWNAVILGL 479

Query: 462 KIHENVE 468
            ++ +VE
Sbjct: 480 AMNGSVE 486


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/641 (39%), Positives = 378/641 (58%), Gaps = 33/641 (5%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            SL+  CK++   KQIH  +L+ GL  DP+ A KL   CA+    SL+YA  +F   P P
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP 68

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +++  NTLIR    S  P  S + F+++  NS   P+ F+F F++KAAA L   RVG  +
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQL 128

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H   +    +  LF+  +LI  Y  CG +  A  VF  + + + ++WN+M++   +GG  
Sbjct: 129 HCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDM 188

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------WPN----- 263
           +   EL+  M + N+    V    +L+   K  +LE  R             W       
Sbjct: 189 KGGRELFDLMPVRNLMSWNV----MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGF 244

Query: 264 -------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EA S F ELQ  K + P+E +   VLSACAQ GA++ G  +H  ++K G+   
Sbjct: 245 AHNGYFEEAFSFFRELQ-RKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWI 303

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
             +  +L+D Y+KCGN+  A  VF  +   R++  W++M+A  AM+G G EA+ +F +M+
Sbjct: 304 VSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKME 363

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           E+ ++P+ + F ++L ACSH+GLV++G  +F++M+ +Y + P ++HY CMVD+ GRAG L
Sbjct: 364 ESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQL 423

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
            +A EF+ +MPI   A +W  LLGAC +H +V+LAE     L EL+P N    VLLSN Y
Sbjct: 424 QKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAY 483

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A  GKW + + +R+ M    + K PG S IEV+  ++ FLAG   + + +E Y KL EI+
Sbjct: 484 AVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEII 543

Query: 556 ARLK-SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
            RL+   GYVP    +L  +EEE+ +E ++++HSE+LA+A+G+  +   + IRIVKNLR+
Sbjct: 544 RRLRVEGGYVPEIGRVLHDIEEEE-KEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRI 602

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH V KLIS++Y  EI++RDR RFH F+ G CSC DYW
Sbjct: 603 CRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/657 (40%), Positives = 373/657 (56%), Gaps = 60/657 (9%)

Query: 7   QHMETLSTPVISLPRHPN---PTTLTVNNGHQHHPHPVFSLIKQCK-NIKQLKQIHTQML 62
           + M + +T     P H +   P   +       H   +  L  QC  ++  LKQ H  +L
Sbjct: 20  KRMSSTATTATEAPYHHHHLIPNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALIL 79

Query: 63  RTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
           RTG   D Y A  L   +   +   + S E +  +FD + +PN++ WN +I+    + EP
Sbjct: 80  RTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEP 139

Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
            ++ +++ +++  + + PN++T+P V+KA +       G  +H  ++K     D  I +S
Sbjct: 140 FKAILLYYEMMV-AHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSS 198

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
            I  YA                                   F + +E  R ++ +  + D
Sbjct: 199 AIRMYA----------------------------------SFGRLVEARRILDDKGGEVD 224

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
            V        C   R   F     EAL IFH++Q  K + P +F   SVLSACA LGA+D
Sbjct: 225 AV--------CMPDRKGCF----MEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALD 271

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G  IH   K+  I+L+  L TSL+DMY KCG +D A EVF  + +++V  W+ MI G A
Sbjct: 272 QGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLA 331

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           M+G   +A+DLFS+M    + PN +TF  VL AC+H GLV +G   FN M   YGV P +
Sbjct: 332 MHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 388

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY C+VD+LGRAGLL EA + +  +P  P  +VWGALLGAC+ H NVEL E     LLE
Sbjct: 389 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 448

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN-GEIHKFLAGE 538
           LEP+N G   LLSNIYAK G+W+ V E+RK M+  G+K  PG S I++  GE+HKF+ G+
Sbjct: 449 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 508

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
            SHP  K+IY  LD++  RL+  GY P+ S +L  ++EE+ +E A+  HSE+LAI +GLI
Sbjct: 509 GSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEE-KETAVWQHSEKLAIGFGLI 567

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  P   IRIVKNLRVC DCH+  KLIS++YNREI++RDR R+HHFR G CSC D+W
Sbjct: 568 NTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/661 (38%), Positives = 372/661 (56%), Gaps = 79/661 (11%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---------- 76
           +++G + + +   S+ K C  I+   + KQ+H  +L+ GL  + +  + L          
Sbjct: 120 ISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGEL 179

Query: 77  -----------------FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSA 117
                            FT    G  S   L+ ARE+FD+IP  ++ +WN +I  Y+ S 
Sbjct: 180 VNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSG 239

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL-VQFRVGQAIHGMVIKSSFEDDLFI 176
             ++  M F + +  +   PN  T   V+ A A+     ++G  +   +       ++ +
Sbjct: 240 R-VEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N LI  Y  CGDL  A  +F  I  K+VVSWN MI G+     +++A+ L+R M     
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRM----- 353

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                                                +  N++P++ TF+S+L ACA LG
Sbjct: 354 -------------------------------------MQSNIDPNDVTFLSILPACANLG 376

Query: 297 AMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           A+D+G  +HA + K  + +K    L TSLIDMY KCG+L  A  +F  + ++ +  W+ M
Sbjct: 377 ALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAM 436

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I+GFAM+G    AL LFSRM      P+ +TF  VL AC H+GL+  GR +F+ M   Y 
Sbjct: 437 ISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYK 496

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           V P + HY CM+D+ GRAGL DEA   ++ M + P  ++W +LLGAC+IH  +ELAE   
Sbjct: 497 VSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVA 556

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
            HL ELEPEN  A VLLSNIYA  G+W++V+++R  +  + +KK PGCSSIEV+  +H+F
Sbjct: 557 KHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEF 616

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           L G+  HP   EIY  LDEI  RL+  G+VP+ S +L  ++EE  +E  L+ HSE+LAIA
Sbjct: 617 LVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEE-WKEGVLSHHSEKLAIA 675

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLIS +P   IRI+KNLRVCG+CH+  KLISK++NREI+ RDR RFHHF+ G+CSC DY
Sbjct: 676 FGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDY 735

Query: 655 W 655
           W
Sbjct: 736 W 736



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 255/468 (54%), Gaps = 25/468 (5%)

Query: 9   METLSTPVISLP----RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRT 64
           M  L++PV +L       P+P    V      H HP  +L+  CK ++ LKQIH+Q+++T
Sbjct: 1   MVVLASPVSTLQVLSFSDPSPPYKLV------HDHPSLTLLSNCKTLQTLKQIHSQIIKT 54

Query: 65  GLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
           GL    ++ SKL   CA+     L YA  +F  I  PN   WN +IR  SSS  P  +  
Sbjct: 55  GLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALE 114

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
            ++ ++ +S   PNE+TFP + K+  ++     G+ +H  V+K   E + F+  SLI+ Y
Sbjct: 115 YYVHMI-SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMY 173

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           A  G+L  A  VF     +D VS+ ++I+G+   GF ++A EL+ E+ + +V    V+  
Sbjct: 174 AQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDV----VSWN 229

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQ 303
           A++S  A+   +E      EA++ F E++ +K V P+  T +SVLSACAQ G+ + +G  
Sbjct: 230 AMISGYAQSGRVE------EAMAFFEEMRRAK-VTPNVSTMLSVLSACAQSGSSLQLGNW 282

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           + + ++ +G+  N  L   LIDMY KCG+L++A  +F  ++ ++V  W+ MI G+    C
Sbjct: 283 VRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHY 422
            +EAL LF RM ++ + PN VTF ++L AC++ G +D G+     ++  +  +   V  +
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALW 402

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
           T ++DM  + G L  A    + M      + W A++    +H + + A
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMN-TKSLATWNAMISGFAMHGHTDTA 449


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/640 (39%), Positives = 377/640 (58%), Gaps = 32/640 (5%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            +L  +CK+++ +KQI   + +T L   P  + KL   CA+    SL YAR +F  I  P
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNP 68

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +++ +NTLIR  S S  P  +  +F+++   S   P+ F+F F++KAAA       G  +
Sbjct: 69  DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQL 128

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H + +    +  LF+  +LI  YA C  L  A  VF  + + ++V+WN++++   +    
Sbjct: 129 HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGV 188

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------WP------ 262
           + A +++R M + N+    +    +L+   K  +L+  R             W       
Sbjct: 189 KDAEQVFRCMPIRNLTSWNI----MLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGF 244

Query: 263 ------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 N+A + F E++  + + P+E +   VLSACAQ GA + G  +H  ++K G    
Sbjct: 245 AHNGNFNDAFAFFREVR-REGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI 303

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             +  +LID Y+KCGNLD A  VF  +  R    W+ MIAG AM+G G EA+ LF+ M+E
Sbjct: 304 ISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE 363

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + +KP+++TF ++L ACSH+GLVD G  +F++M   YG+ P ++HY CMVD+ GRAG L 
Sbjct: 364 SNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQ 423

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A +F+ +MPI P   VW  LLGAC IH N+ LA      L EL+PEN G  VLLSNIYA
Sbjct: 424 QAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYA 483

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             GKW +V+ LR+ M    LKK PG S IEVN  I+ F+AGE  + +  E + KL EI++
Sbjct: 484 VAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMS 543

Query: 557 RLK-SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           RL+   GYVP    +L  +E E+ +E +++ HSE+LA+A+G+  +   + IR+VKNLR+C
Sbjct: 544 RLRIEGGYVPEVGSVLHDIEVEE-KEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRIC 602

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCHTV KLISK+Y  EI++RDR RFH F  G+CSC DYW
Sbjct: 603 RDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/632 (39%), Positives = 378/632 (59%), Gaps = 65/632 (10%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQI 98
           ++++ C ++ QLKQ+H   LRT     P   + LF    +     +FS + YA  +FD I
Sbjct: 30  TVLQTCSDMSQLKQLHAFTLRTTY---PEEPATLFLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 99  PQPNLYTWNTLIRAYSSS-AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
              + + WNTLIRA +   +   ++FM++ +++      P++ TFPFV+KA A +  F  
Sbjct: 87  ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H  ++K  F  D++++N LIH Y  CG L +A  VF  + ++ +VSWNSMI   V+
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                                                   FG + + AL +F E+Q  ++
Sbjct: 207 ----------------------------------------FGEY-DSALQLFREMQ--RS 223

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ---GIKLNCYLTTSLIDMYTKCGNLD 334
             PD +T  SVLSACA LG++ +G   HA + ++    + ++  +  SLI+MY KCG+L 
Sbjct: 224 FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLR 283

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK--VKPNAVTFTNVLCA 392
            A +VF  ++ RD+  W+ MI GFA +G   EA++ F RM + +  V+PN+VTF  +L A
Sbjct: 284 MAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIA 343

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+H G V++GR +F+ M   Y + P ++HY C+VD++ RAG + EA++ +  MP+ P A 
Sbjct: 344 CNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAV 403

Query: 453 VWGALLGAC-KIHENVELAEYACSHLLELEPENH-------GALVLLSNIYAKTGKWDNV 504
           +W +LL AC K   +VEL+E    +++  + +N        GA VLLS +YA   +W++V
Sbjct: 404 IWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDV 463

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
             +RK M   G++KEPGCSSIE+NG  H+F AG++SHP  K+IY +L  I  RL+S GY+
Sbjct: 464 GIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYL 523

Query: 565 PNRSHL-LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
           P+RS   L     +  +E +L LHSERLAIA+GLI++ P  PIRI KNLRVC DCH V K
Sbjct: 524 PDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTK 583

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LISK++N EI++RDR RFHHF+ G+CSC+DYW
Sbjct: 584 LISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/701 (39%), Positives = 400/701 (57%), Gaps = 83/701 (11%)

Query: 18  SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           S+ R PNP T   +N        + SL   CK ++ LKQ+H Q++       P+  S L 
Sbjct: 82  SMSRTPNPLTNPPSNPQ------ILSLFNPCKTLRHLKQVHAQIITH--HNSPFQLSALA 133

Query: 78  TPCALGTFSS-LEYAREMFDQIPQPNLYTWNTLIRAYSSS-----AEPIQSFMIFLQLVY 131
           +  AL  F + L YA+ +F  +  P    +N+LIRA SSS     A P+   M+   L  
Sbjct: 134 SLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKP 193

Query: 132 NSPYFP------NEFTFPF--------VIKAAARLVQFRVGQAIH--------------- 162
           +   +P      NE +  +        V+K+      + V   IH               
Sbjct: 194 DHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF 253

Query: 163 ---------------------------GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
                                       MV       D+   N++I+ YAI G +  A  
Sbjct: 254 NLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKR 313

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           +F  + ++++VSWNSM++GFV+ G  E A  L+ EM   +V     +M+A  + C K   
Sbjct: 314 LFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWN-SMLACYAQCGK--- 369

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                 PNEAL++F +++ +  V P E T VS+LSACA LGA+D G+ +H  +    I++
Sbjct: 370 ------PNEALALFDQMR-AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEV 422

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N  + T+L+DMY KCG +  A +VF+ ++S+DV  W+T+IAG A++G  +EA  LF  M+
Sbjct: 423 NSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMK 482

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           EA V+PN +TF  +L ACSH+G+VDEG+   + M   YG+ P V+HY C++D+L RAG L
Sbjct: 483 EAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFL 542

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           +EA+E I  MP+ P  S  GALLG C+IH N EL E     L+ L+P + G  +LLSNIY
Sbjct: 543 EEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 602

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A   KWD+  ++R  M+V+G+ K PG S IE+ G +H+F+AG+ SHP   +IY KL+EI 
Sbjct: 603 AAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIH 662

Query: 556 ARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
            RLKS  GY  +  ++L  +EEED +E AL +HSE+LAIAYGL+ ++  + IRIVKNLRV
Sbjct: 663 TRLKSAIGYSADTGNVLLDMEEED-KEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRV 721

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH V KLISK+Y REI++RDR RFHHF  G CSC+D+W
Sbjct: 722 CRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/610 (40%), Positives = 377/610 (61%), Gaps = 13/610 (2%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  SL+      K+++QIH ++   G   D +   +     AL   + L+YA ++ D+ 
Sbjct: 15  HPAISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRS 74

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRV 157
            +P L+  N++IRA+  S  P +SF  + +++ +     P+ +T  F+++A   L     
Sbjct: 75  DKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRET 134

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +HGM I+  F++D  +   LI  YA  G L   + VF  +   D V   +M++   +
Sbjct: 135 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACAR 194

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A +L+  M     + D +   A++S  A+  +        EAL++FH +QL + 
Sbjct: 195 CGDVAFARKLFEGMP----EKDPIAWNAMISGYAQVGE------SREALNLFHLMQL-EG 243

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V  +  + +SVLSAC QLGA+D G   H+ +++  IK+   L T+L+D+Y KCG++DKA+
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAM 303

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           EVF  ++ ++V+ WS+ + G AM G G + L LFS M++  V PNAVTF +VL  CS  G
Sbjct: 304 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVG 363

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            VDEG+  F+ M   +G+ P + HY C+VD+  RAG L++AV  I++MP+   A+VW +L
Sbjct: 364 FVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSL 423

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L A ++++N+EL   A   +LELE  NHGA VLLSNIYA +  WDNVS +R+ M+  G++
Sbjct: 424 LHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVR 483

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K+PGCS +EVNGE+H+F  G+ SHP   EI +   +I  RL+  GY  + + ++  ++EE
Sbjct: 484 KQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 543

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E AL LHSE+ AIA+G++S++   PIRIVKNLRVCGDCH V+ +ISK++NREI++RD
Sbjct: 544 E-KEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRD 602

Query: 638 RYRFHHFRGG 647
           R RFHHF+ G
Sbjct: 603 RNRFHHFKDG 612



 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 297/521 (57%), Gaps = 42/521 (8%)

Query: 135  YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            + PNE TF  +I A         G  IHG+V+KS   +++ + N+L++ Y   GDL  + 
Sbjct: 633  FRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSC 692

Query: 195  CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
             +F  +  K++VSWN+MI   +Q G  E+ +  +                          
Sbjct: 693  KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYF-------------------------- 726

Query: 255  DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                 RW                + PD+ TF++VL  C  +G + +   IH  +   G  
Sbjct: 727  --NMSRWVG--------------LKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFN 770

Query: 315  LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
             N  +TT+L+D+Y K G L+ +  VF  + S D   W+ M+A +A +G GR+A+  F  M
Sbjct: 771  ANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELM 830

Query: 375  QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                + P+ VTFT++L ACSHSGLV+EGR +F  M   Y + P + HY+CMVD++GR+GL
Sbjct: 831  VHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGL 890

Query: 435  LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
            L +A   I++MP+ P + VWGALLGAC+++++ +L   A   L ELEP +    ++LSNI
Sbjct: 891  LQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNI 950

Query: 495  YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
            Y+ +G W + S +R  M+  GL +  G S IE   +IHKF+ G+ SHP  ++I  KL EI
Sbjct: 951  YSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEI 1010

Query: 555  VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
              ++KS     +R+  +    +EDV+E+ +N HSE++A+A+GL+ + P +PI I KNLR+
Sbjct: 1011 RKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRI 1070

Query: 615  CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            CGDCH  AK IS +  R I++RD  RFHHF  G+CSC DYW
Sbjct: 1071 CGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 42  FSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            S+I  C    N ++   IH  ++++G+  +    + L      G    L  + ++F+ +
Sbjct: 641 LSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMN--LYGKTGDLISSCKLFEDL 698

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              NL +WNT+I  +  +    +  + +  +       P++ TF  V++    +   R+ 
Sbjct: 699 SVKNLVSWNTMIVIHLQNGLA-EEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLS 757

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           Q IHG+++   F  +  I+ +L+  YA  G L  +  VF+ I   D ++W +M++ +   
Sbjct: 758 QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATH 817

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+   AI+ +  M    + PD VT   +L+AC+    +E GR+  E +S  + ++
Sbjct: 818 GYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIE 872


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 365/623 (58%), Gaps = 47/623 (7%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAR 92
           +Q HP    SL+ +C ++ +LKQI    ++T L  D    +KL   C L  T S +++A 
Sbjct: 28  NQLHP---LSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAH 84

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +FDQI   ++  +N + R Y+ S  P  +F +F +L+  S   P+++TF  ++KA A  
Sbjct: 85  HLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLC-SGLLPDDYTFSSLLKACASS 143

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              R G  +H   +K     +++I  +LI+ YA C D+  A  VF  + +  +VS+N++I
Sbjct: 144 KALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAII 203

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           +G+ +                                            PNEALS+F EL
Sbjct: 204 TGYARSS-----------------------------------------QPNEALSLFREL 222

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q S N+ P + T +SV+ +CA LGA+D+G  IH  +KK+G      + T+LIDM+ KCG+
Sbjct: 223 QAS-NIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGS 281

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L  A+ +F  ++ RD   WS MI  FA +G G +A+ +F  M+   V+P+ +TF  +L A
Sbjct: 282 LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYA 341

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH+GLV++GR +F  M   YG+ PG+KHY CMVD+LGRAG LDEA  F++K+ I     
Sbjct: 342 CSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPI 401

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W  LL AC  H NVE+A+     + EL+  + G  V+LSN+YA+ G+W++V+ LRK M+
Sbjct: 402 LWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMK 461

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             G+ K PGCSS+EVN  +H+F +G+  H +  E+   LDE++  +K  GYVP+ S +  
Sbjct: 462 DRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYH 521

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
              EE+ +E  L  HSE+LA+A+GL++  P   IR+ KNLR+CGDCH  AKLIS ++ R+
Sbjct: 522 ADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRK 581

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD  RFH F  G CSC D+W
Sbjct: 582 IVIRDVQRFHRFEDGKCSCGDFW 604


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/677 (37%), Positives = 386/677 (57%), Gaps = 73/677 (10%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+K C    ++++ K+IH Q++  G   + ++ +    ++  C L     +E A +MFD+
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL-----VEEAYKMFDR 235

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L  WNT+I  Y+ +     +  + L++       P+  T   ++ A A +   R+
Sbjct: 236 MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKR-PDSITIVSILPAVADVGSLRI 294

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G++IHG  +++ FE  + +S +L+  Y+ CG +  A  +F  +  K VVSWNSMI G+VQ
Sbjct: 295 GRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE------------- 264
            G    A+E++++M  E V+   VT++  L ACA   D+E GR+ ++             
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSV 414

Query: 265 ----------------ALSIFHELQLS------------------------------KNV 278
                           A  IF  LQ                                +N+
Sbjct: 415 MNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNI 474

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD FT VSV+ A A+L  +     IH  + +  +  N ++ T+L+DMY KCG +  A +
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  +  R V  W+ MI G+  +G G+ AL+LF +M++  +KPN VTF  VL ACSHSGL
Sbjct: 535 LFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGL 594

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EG  +F  M+  YG+ P + HY  MVD+LGRA  L+EA +FI+KMPI P  SV+GA+L
Sbjct: 595 VEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAML 654

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH+NVEL E A + + +L+P++ G  VLL+NIYA    WD V+ +R  M   G++K
Sbjct: 655 GACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQK 714

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG S +E+  E+H F +G +SHP  K+IY+ L+ +  R+K+ GY+P+ + +  +  E+ 
Sbjct: 715 TPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSVHDV--EDV 772

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
           V+EQ LN HSE+LAIA+ L++  P   I + KNLRVCGDCH   K IS +  REI++RD 
Sbjct: 773 VKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDM 832

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G CSC DYW
Sbjct: 833 RRFHHFKDGTCSCGDYW 849



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 214/464 (46%), Gaps = 48/464 (10%)

Query: 22  HPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           H  P++ T    H +  HP   L++ C ++K+L Q    +++ GL+ +    +KL +   
Sbjct: 62  HRTPSSRTYIPSHVY-KHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVS--L 118

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
              F SL  A  +F  I       ++T+++ Y+ ++    +   F ++ Y+    P  + 
Sbjct: 119 FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR-PVVYN 177

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F +++K        R G+ IH  +I + F  ++F    +++ YA C  +  AY +F  + 
Sbjct: 178 FTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++D+V WN++ISG+ Q GF + A+EL   M+ E  +PD +T+V++L A A          
Sbjct: 238 ERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVA---------- 287

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                            +G++ IG  IH    + G +    ++T
Sbjct: 288 --------------------------------DVGSLRIGRSIHGYSMRAGFESFVNVST 315

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY+KCG++  A  +F  +  + V  W++MI G+   G    A+++F +M + +V+ 
Sbjct: 316 ALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEM 375

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
             VT    L AC+  G V++GR F +++     +   V     ++ M  +   +D A E 
Sbjct: 376 TNVTVMGALHACADLGDVEQGR-FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACS-HLLELEPEN 484
            E +      S    +LG  +     E  +Y C   L  ++P++
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS 478


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/656 (38%), Positives = 376/656 (57%), Gaps = 37/656 (5%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP---YSASKLFTPCA 81
           P    V N + H    +     Q K++ + K+IH   L+     D    +  ++L+  C 
Sbjct: 2   PLRFEVKNNYLH----LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC- 56

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
               + +  AR +FD+IP P++  WN +IRAY+ +  P    +     + +    PN++T
Sbjct: 57  ----NQVVLARRLFDEIPNPSVILWNQIIRAYAWNG-PFDGAIDLYHSMLHLGVRPNKYT 111

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +PFV+KA + L+    G  IH        E D+F+  +L+ FYA CG L  A  +F  + 
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC-----AKKRDL 256
            +DVV+WN+MI+G    G  + A++L  +M+ E + P+  T+V VL  C     A+K   
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFD 231

Query: 257 EFG-----RWP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
             G      W              EAL IF  +QLS  ++PD  T + VL AC+ L A+ 
Sbjct: 232 VMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLS-GIDPDLTTMLGVLPACSHLAALQ 290

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G   H  +  +G   +  +  +LIDMY+KCG +  A EVF+ +   D+  W+ MI G+ 
Sbjct: 291 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 350

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           ++G G EAL LF  +    +KP+ +TF  +L +CSHSGLV EGR++F+ M   + +VP +
Sbjct: 351 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 410

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +H  CMVD+LGRAGL+DEA  FI  MP  P   +W ALL AC+IH+N+EL E     +  
Sbjct: 411 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQS 470

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           L PE+ G  VLLSNIY+  G+WD+ + +R   +  GLKK PGCS IE+NG +H F+ G+ 
Sbjct: 471 LGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQ 530

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SH    +I  KL+E++  +K  GY    S + Q VEEE+ +EQ L  HSE+LAIA+G+++
Sbjct: 531 SHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE-KEQILLYHSEKLAIAFGILN 589

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++  +PI + KNLRVCGDCHT  K ++ +  REI +RD  RFHHF+ G C+C D+W
Sbjct: 590 LKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/668 (37%), Positives = 371/668 (55%), Gaps = 59/668 (8%)

Query: 4   NPPQHMETLSTPVISLP---RHPNPTTLTVNN---GHQHHPHP---------VFSLIKQC 48
            P +++ T +    SLP      +P+T + N+    HQ HP P         + SLIK C
Sbjct: 19  TPGRYLSTSAFSTASLPFLDSEESPSTASENHRRLQHQTHPLPKSRDESENQLISLIKSC 78

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
                L QIH  ++RT L  + + + +  +  AL     + Y+ ++F QI +P+   +N 
Sbjct: 79  SKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNV 138

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +IRAYS S  P Q F ++ ++       PN  +  FV+K+  R+     G  IH  +++ 
Sbjct: 139 MIRAYSMSHSPEQGFYLYREM-RRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRD 197

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             + D  +  +L+  Y+ C     A  VF  I + D VSWN +IS  +            
Sbjct: 198 GHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHN---------- 247

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVS 287
                                          R   +AL +F  +Q + +   PD+ T + 
Sbjct: 248 -------------------------------RRTRDALRMFDIMQSTADGFEPDDVTCLL 276

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L ACA LGA++ G ++H  +++ G      L  SLI MY++CG L+KA  +F  +  R+
Sbjct: 277 LLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERN 336

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  WS MI+GFAM+G GREA++ F +MQ+  V P+  T T VL ACSH GLVD+G MFF+
Sbjct: 337 VVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFD 396

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
           +M  V+G+ P + HY CMVD+LGRAGLLD+A + I  M I P +++W  LLGAC+IH + 
Sbjct: 397 RMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHA 456

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            L E    HL+EL+ +  G  VLL NIY+  G WD V++LRK M+  G++  PGCS+IE+
Sbjct: 457 TLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIEL 516

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G++H+F+  +  HP   EIY  LDEI  +LK  GYV   S  L  +  E+ +   L+ H
Sbjct: 517 KGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEE-KGNRLSYH 575

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LAIA+G+++  P   IR+ KNLR+C DCH  AK++S  YNRE+++RDR RFHHFR G
Sbjct: 576 SEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREG 635

Query: 648 NCSCMDYW 655
            CSC  YW
Sbjct: 636 QCSCNGYW 643


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/699 (37%), Positives = 390/699 (55%), Gaps = 88/699 (12%)

Query: 35  QHHP---HPVFSLIKQC----------KNIKQLKQIHTQMLRTGLF-FDPYSASKL---F 77
           + HP   +P+ SL  QC          K+ KQ +Q+H  M+   +   + Y  +KL   +
Sbjct: 48  REHPLQQYPLTSL--QCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFY 105

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
             C L     +  A  +FD I   N + WN +IR Y+S+  P++S +++ +++       
Sbjct: 106 AGCGL-----MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRAD 160

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           N FT+PFV+KA   L+   +G+ +H  V+    E D+++ NSL+  YA  GD+  A  VF
Sbjct: 161 N-FTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVF 219

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK----- 252
             + ++D+ SWN+MISG+ +      A  ++  M    +  D  T++ +LSACA      
Sbjct: 220 DRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVK 279

Query: 253 --------------------------------------KRDLEFGRWPN----------- 263
                                                 +R  E  RW +           
Sbjct: 280 EGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGY 339

Query: 264 -------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  E+L +F  + L  +  PD+ TF++VL AC Q+ A+  G+ IH+ + K+G   N
Sbjct: 340 ARNGDAFESLRLFRRMALDGS-GPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDAN 398

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + T+L+DMY+KCG+L  +  VF  +  + +  WS M+AG+ ++G GREA+ +   M+ 
Sbjct: 399 TIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKA 458

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             V P+   FT++L ACSH+GLV EG+  F +ME  Y V P + HY+CMVD+LGRAG LD
Sbjct: 459 NSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLD 518

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA   I  M I P + +W ALL A ++H+N++LAE +   + ++ P+   + + LSNIYA
Sbjct: 519 EAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYA 578

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              +WD+V  +R  +R  GLKK PGCS IE++  +H+FL G+ SH   ++IY+KL+E+  
Sbjct: 579 AEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQ 638

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           +LK  GY P+ S +   VEEE V+E+ L  HSERLAIA+ LI+  P   IRI KNLRVCG
Sbjct: 639 QLKEAGYKPDTSLVFYDVEEE-VKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCG 697

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHTV KLIS+L  REI++RD +RFHHF  G CSC DYW
Sbjct: 698 DCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/698 (37%), Positives = 380/698 (54%), Gaps = 74/698 (10%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPC 80
           N  TL    G +       S++  C +   L   +++H +++  GL  +    + L +  
Sbjct: 131 NLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMY 190

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFP 137
           A     S+  AR +FD +   +  +W TL  AY+ S    E ++++   LQ        P
Sbjct: 191 A--KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ----EGVRP 244

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           +  T+  V+ A   L     G+ IH  +++S    D+ +S +L   Y  CG +  A  VF
Sbjct: 245 SRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVF 304

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK---- 253
             +  +DV++WN+MI G V  G  E+A  ++  M  E V PD VT +A+LSACA+     
Sbjct: 305 ECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLA 364

Query: 254 ---------------RDLEFG---------------------RWPN-------------- 263
                           D+ FG                     R P               
Sbjct: 365 CGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424

Query: 264 ------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                 E+ S F ++ L + V  ++ T++ VL AC+   A+  G +IHA++ K GI  + 
Sbjct: 425 DCGQVVESFSTFKKM-LQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADL 483

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            +  +L+ MY KCG+++ A+ V   + +RDV  W+T+I G A  G G EAL  F  M+  
Sbjct: 484 AVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSE 543

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           +++PNA TF NV+ AC    LV+EGR  F  M   YG+VP  KHY CMVD+L RAG L E
Sbjct: 544 EMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGE 603

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + I  MP  P A++WGALL AC+ H NVE+ E A    L+LEP+N G  V LS IYA 
Sbjct: 604 AEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAA 663

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
            G W +V++LRK M+  G+KKEPG S IEV GE+H F+AG+ SHP  +EIYS+L+ +  +
Sbjct: 664 AGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQ 723

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +KS GYVP+   ++  +++E  +E+A+  HSE+LAIAYGLIS  P  PIR+ KNLRVC D
Sbjct: 724 IKSLGYVPDTRFVMHDLDQEG-KERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTD 782

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CHT  K ISK+  REI+ RD +RFHHF+ G CSC DYW
Sbjct: 783 CHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 202/436 (46%), Gaps = 56/436 (12%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPY---SASKLFTPCALGT 84
             G Q   +    L++ C   K L   KQ+H  +LR G+  + Y   +  KL+  C    
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCG--- 93

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
             S+  AR +FD+    ++ +WN +I  Y+      ++F +F  L+      P++FTF  
Sbjct: 94  --SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLF-TLMQQEGLEPDKFTFVS 150

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++ A +       G+ +H  V+++   ++  + N+LI  YA CG +  A  VF  +  +D
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            VSW ++   + + G+ +++++ Y  M  E V+P  +T + VLSAC              
Sbjct: 211 EVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSAC-------------- 256

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                         L A++ G QIHA++ +     +  ++T+L 
Sbjct: 257 ----------------------------GSLAALEKGKQIHAQIVESEHHSDVRVSTALT 288

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY KCG +  A EVF  + +RDV  W+TMI G    G   EA  +F RM +  V P+ V
Sbjct: 289 KMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRV 348

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  +L AC+  G +  G+    +     G+V  V+    +++M  +AG + +A +  ++
Sbjct: 349 TYLAILSACARPGGLACGKEIHARAVK-DGLVSDVRFGNALINMYSKAGSMKDARQVFDR 407

Query: 445 MPIVPGASVWGALLGA 460
           MP     S W AL+G 
Sbjct: 408 MPKRDVVS-WTALVGG 422



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 163/343 (47%), Gaps = 48/343 (13%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           LQ ++      + + +  ++++  +     VG+ +H  +++   + +++I N+L+  Y  
Sbjct: 32  LQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVH 91

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG +  A  +F     K VVSWN MISG+   G  ++A  L+  M+ E ++         
Sbjct: 92  CGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE--------- 142

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                                            PD+FTFVS+LSAC+   A++ G ++H 
Sbjct: 143 ---------------------------------PDKFTFVSILSACSSPAALNWGREVHV 169

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
           ++ + G+  N  +  +LI MY KCG++  A  VF  + SRD   W+T+   +A  G  +E
Sbjct: 170 RVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQE 229

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCM 425
           +L  +  M +  V+P+ +T+ NVL AC     +++G+    Q+ E  +     V+  T +
Sbjct: 230 SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH--SDVRVSTAL 287

Query: 426 VDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHE 465
             M  + G + +A E  E +P   ++   ++ G L+ + ++ E
Sbjct: 288 TKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEE 330



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 8/200 (4%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P + L   H+    K    D + +V +L +C +   + +G Q+H  + + G+K N Y+  
Sbjct: 28  PADVLQYLHQ----KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIIN 83

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ +Y  CG++++A  +F    ++ V  W+ MI+G+A  G G+EA +LF+ MQ+  ++P
Sbjct: 84  TLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEP 143

Query: 382 NAVTFTNVLCACSHSGLVDEGR-MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           +  TF ++L ACS    ++ GR +    ME   G+         ++ M  + G + +A  
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARR 201

Query: 441 FIEKMPIVPGASVWGALLGA 460
             + M      S W  L GA
Sbjct: 202 VFDAMASRDEVS-WTTLTGA 220


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/676 (37%), Positives = 385/676 (56%), Gaps = 68/676 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            L+++C  ++ L+Q   +H  +L++G+  + Y  + L +  A     SL  AR +FD I 
Sbjct: 101 GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDGIR 158

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             N+ +W  +I A+ +  + ++++  + + +  +   P++ TF  ++ A       +VGQ
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQ 217

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  + K+  E +  +  SL+  YA CGD++ A  +F  + +K+VV+W  +I+G+ Q G
Sbjct: 218 KVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQG 277

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE---------------------- 257
             + A+EL  +M+   V P+++T  ++L  C     LE                      
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVN 337

Query: 258 ------------------FGRWP--------------------NEALSIFHELQLSKNVN 279
                             FG  P                    +EA+ +F  +Q  + + 
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ-QQGIK 396

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD+ TF S L++C+    +  G  IH ++   G  L+ YL ++L+ MY KCG++D A  V
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLV 456

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ +  R+V  W+ MI G A +G  REAL+ F +M++  +KP+ VTFT+VL AC+H GLV
Sbjct: 457 FNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLV 516

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EGR  F  M   YG+ P V+HY+C VD+LGRAG L+EA   I  MP  PG SVWGALL 
Sbjct: 517 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLS 576

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH +VE  E A  ++L+L+P++ GA V LSNIYA  G++++  ++R+ M    + KE
Sbjct: 577 ACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKE 636

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S IEV+G++H F   + SHP  KEIY++L ++  ++K  GYVP+   +L  V+EE  
Sbjct: 637 PGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQ- 695

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           + Q L  HSERLAI YGL+   P  PIRIVKNLRVCGDCHT +K ISK+  REI+ RD +
Sbjct: 696 KVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAH 755

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF  G CSC D+W
Sbjct: 756 RFHHFVDGVCSCGDFW 771



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 176/387 (45%), Gaps = 71/387 (18%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  +++  ARL     G+ +H  ++KS  + + ++ N+L+  YA CG L  A  VF  I 
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +++VSW +MI  FV G    +A + Y  M++   KPD+VT V++L+A      L+ G+ 
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 262 P-----------------------------NEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                         ++A  IF +L   KNV     T+  +++  
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLP-EKNV----VTWTLLIAGY 273

Query: 293 AQLGAMDIGVQIHAKMKK------------------------QGIKLNCYLTTS------ 322
           AQ G +D+ +++  KM++                         G K++ Y+  S      
Sbjct: 274 AQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREI 333

Query: 323 -----LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
                LI MY KCG L +A ++F  +  RDV  W+ M+ G+A  G   EA+DLF RMQ+ 
Sbjct: 334 WVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQ 393

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            +KP+ +TFT+ L +CS    + EG+    Q+    G    V   + +V M  + G +D+
Sbjct: 394 GIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKCGSMDD 452

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIH 464
           A     +M        W A++  C  H
Sbjct: 453 ARLVFNQMS-ERNVVAWTAMITGCAQH 478



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 27/228 (11%)

Query: 263 NEALSIFHELQL-SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            EAL I + + L    V  D   F  +L  CA+L +++ G ++HA + K GI+ N YL  
Sbjct: 78  KEALGILNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLEN 135

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ MY KCG+L  A  VF  ++ R++  W+ MI  F       EA   +  M+ A  KP
Sbjct: 136 TLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKP 195

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFN-------QMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           + VTF ++L A ++  L+  G+           ++EP  G        T +V M  + G 
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--------TSLVGMYAKCGD 247

Query: 435 LDEAVEFIEKMP---------IVPGASVWGALLGACKIHENVELAEYA 473
           + +A    +K+P         ++ G +  G +  A ++ E ++ AE A
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/640 (38%), Positives = 375/640 (58%), Gaps = 46/640 (7%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           ++SLP  P P +  +N   + +     SL+K+CK++++ KQ+H  +L+ GLF+D +  S 
Sbjct: 12  LLSLPNSP-PQSSELNA--KFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSN 68

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           L   CAL  + S+EYA  +F QI +P  + +NT+IR   +S +  ++ +++++++     
Sbjct: 69  LVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEML-ERGI 127

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ FT+PFV+KA + LV  + G  IH  V K+  E D+F+ N LI  Y  CG +  A  
Sbjct: 128 EPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGV 187

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  + +K V SW+S+I           ++E++ E  M         ++  +S   + R 
Sbjct: 188 VFEQMDEKSVASWSSIIGAHA-------SVEMWHECLM---------LLGDMSGEGRHR- 230

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                                    +E   VS LSAC  LG+ ++G  IH  + +   +L
Sbjct: 231 ------------------------AEESILVSALSACTHLGSPNLGRCIHGILLRNISEL 266

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N  + TSLIDMY KCG+L+K L VF  +  ++ + ++ MIAG A++G GREA+ +FS M 
Sbjct: 267 NVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDML 326

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           E  + P+ V +  VL ACSH+GLV+EG   FN+M+  + + P ++HY CMVD++GRAG+L
Sbjct: 327 EEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGML 386

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
            EA + I+ MPI P   VW +LL ACK+H N+E+ E A  ++  L   N G  ++L+N+Y
Sbjct: 387 KEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMY 446

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A+  KW NV+ +R  M    L + PG S +E N  ++KF++ + S P+C+ IY  + ++ 
Sbjct: 447 ARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQME 506

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            +LK  GY P+ S +L L  +ED + Q L  HS++LAIA+ LI      PIRI +NLR+C
Sbjct: 507 WQLKFEGYTPDMSQVL-LDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMC 565

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCHT  K IS +Y REI +RDR RFHHF+ G CSC DYW
Sbjct: 566 NDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/648 (38%), Positives = 377/648 (58%), Gaps = 33/648 (5%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
            H  H   SL+  C+++K LKQ+H  + +TGL  DP  A KL    A+    +L+YAR +
Sbjct: 2   NHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRL 61

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F   P P+++  NTLIR  + S  P  S + F+++        + F+F F++KAAA    
Sbjct: 62  FLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRS 121

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G  +H   I    +  LF+  +L+  Y+ CG +A A  VF  + + +VV+WN++++ 
Sbjct: 122 LESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTA 181

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W 261
             + G  + A  ++  M   N+    V    +L+   K  +LE  R             W
Sbjct: 182 CFRCGDVKGADMMFNRMPFRNLTSWNV----MLAGYTKAGELELARKLFLEMPVKDDVSW 237

Query: 262 PN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                         EA   F ELQ    + P+E +    LSACA  GA++ G  +H  ++
Sbjct: 238 STMIVGFAHNGFFYEAFGFFRELQ-QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIE 296

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREAL 368
           K G      +  +L+D Y+KCGN+  A  VF  + + R +  W++MIAG AM+G G EA+
Sbjct: 297 KSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAI 356

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
            LF  M+E+ ++P+ + F ++L ACSH+GL+++G  +F +M+ +Y + P ++HY CMVD+
Sbjct: 357 QLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDL 416

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
            GRAG LD+A EFI  MP++P A +W  LLGAC IH NV+LAE     L EL+P N G  
Sbjct: 417 YGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDH 476

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLSNIYA  GKW +V+ +R+ M    + K PG S IEV+  ++ F+AGE  + + +E Y
Sbjct: 477 VLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAY 536

Query: 549 SKLDEIVARLKSFG-YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
            KL EI+ +L+  G Y+P    +L  +E+E+ +E +++ HSE+LA+A+G+  +     IR
Sbjct: 537 EKLKEIMLKLRVEGCYIPEVGSVLHDIEDEE-KEDSVSRHSEKLAVAFGIARLCKGSIIR 595

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IVKNLRVC DCHTV KLISK+Y  EI++RDR RFH F+ G+CSC DYW
Sbjct: 596 IVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/637 (40%), Positives = 376/637 (59%), Gaps = 35/637 (5%)

Query: 35  QHHPHP-----VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           QH PHP     +F  + +   IK  +Q H Q++  GL  + + A+K+    A  +   L+
Sbjct: 72  QHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYA--SSGDLD 129

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ--------SFMIFLQLVYNSPYFPNEFT 141
            A  +FD+I  P+   +N++IRAY+               + M FL L+       + FT
Sbjct: 130 SAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLL------GDNFT 183

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
            PFV+K+ A L +  +G+ +HG  ++   E D ++  SLI  Y  CG +  A  +F  + 
Sbjct: 184 LPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI 243

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +D+ SWN++I+G+++ G    A +L+  ME  N+    V+  A++S   +        +
Sbjct: 244 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNG------F 293

Query: 262 PNEALSIFHE-LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
             +AL +F E LQ    + P+  T VSVL ACAQ  A++ G +IH      G+ LN  + 
Sbjct: 294 AEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ 353

Query: 321 TSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           T+L  MY KC +L +A   F  +    +++  W+TMI  +A +GCG EA+ +F  M  A 
Sbjct: 354 TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAG 413

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           V+P+AVTF  +L  CSHSGL+D G   FN M  ++ V P V+HY C+VD+LGRAG L EA
Sbjct: 414 VQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA 473

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
            E I +MP+  G SVWGALL AC+ H N+E+AE A   L  LEP+N G  VLLSN+YA+ 
Sbjct: 474 KELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEA 533

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
           G W+ V +LR  ++  G+KK PGCS IE+NG+ H F+  + SHP  KEIY  L+ +  ++
Sbjct: 534 GMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKI 593

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K  GY+P+ S +L  + EE+ +E  L  HSE+LAIA+GL++  P   +R+ KNLR+CGDC
Sbjct: 594 KMAGYIPDTSFVLHDISEEE-KEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDC 652

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           H   K ISK+Y REI++RD  RFH F+ G+CSC DYW
Sbjct: 653 HAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 375/680 (55%), Gaps = 72/680 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           V SL+  C ++  L   KQ+H+ +L+ G+ FD  +   L   +  C       +E A ++
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG-----DIETAHDI 302

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+   + N+  WN ++ AY   ++  +SF IF Q+     + PN+FT+P +++      Q
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH-PNQFTYPCILRTCTCTGQ 361

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             +G+ IH + IK+ FE D+++S  LI  Y+  G L  A  +  M+ K+DVVSW SMI+G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------- 260
           +VQ  F E+A+  ++EM+   V PD + + +  SACA  + +  G               
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 261 ---W------------PNEALSIFHELQLSKNVNPDE----------------------- 282
              W              EA S+F E++    +  +                        
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQ 541

Query: 283 -------FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                  FTF+S +SA A L  +  G Q+H +  K G      +  +LI +Y KCG+++ 
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIED 601

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F  +  R+   W+T+I   + +G G EALDLF +M++  +KPN VTF  VL ACSH
Sbjct: 602 AKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV+EG  +F  M  VYG+ P   HY C+VD+LGRAG LD A  F+++MPI   A +W 
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWR 721

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL ACK+H+N+E+ E A  HLLELEP +  + VLLSN YA TGKW N  ++RK M+  G
Sbjct: 722 TLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRG 781

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++KEPG S IEV   +H F  G+  HPL  +IY  L E+  RL   GY     +L    E
Sbjct: 782 IRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKE 841

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E     A  +HSE+LA+A+GL+++ P  P+R++KNLRVC DCH+  K  S++  REI+L
Sbjct: 842 QEQKDPTAF-VHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVL 900

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD YRFHHF  G+CSC DYW
Sbjct: 901 RDVYRFHHFNSGSCSCGDYW 920



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 190/415 (45%), Gaps = 63/415 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++F ++   +  +W  ++  Y+ S    ++F ++ Q+ + +   P  +    V+ A  
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHW-TAVIPTPYVLSSVLSACT 155

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           +   F  G+ IH  V K +F  + F+ N+LI  Y   G   +A  VF  +   D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKP-------------------------------- 238
           +ISG  Q G  E A++++ EM++  ++P                                
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 239 ---DEVTMVAVLSACAKKRDLE-----------------------FGRWPNEALS--IFH 270
              D +T  ++L    K  D+E                       +G+  + A S  IF 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++Q +  ++P++FT+  +L  C   G +++G QIH+   K G + + Y++  LIDMY+K 
Sbjct: 336 QMQ-ATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G LDKA ++   ++ RDV  W++MIAG+  +    EAL  F  MQ+  V P+ +   +  
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            AC+    + +G     ++  V G    +  +  +V++  R G  +EA     ++
Sbjct: 455 SACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEAFSLFREI 508



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 167/390 (42%), Gaps = 69/390 (17%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IH   +      D  I N LI  YA  G +  A  VF  +  +D VSW +M+SG+ Q G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----------------PNE 264
            ++A  LY +M    V P    + +VLSAC K +    GR                  N 
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 265 ALSI---FHELQLSKNV-----NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            +++   F   +L++ V       D  TF +++S  AQ G  +  +QI  +M+  G++ +
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 317 C----------------------------------YLTT-SLIDMYTKCGNLDKALEVFH 341
           C                                  Y+T  SL+D+Y KCG+++ A ++F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
                +V +W+ M+  +       ++ ++F +MQ   + PN  T+  +L  C+ +G ++ 
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPIVPGASVWGALL 458
           G    + +    G    +     ++DM  + G LD+A   +E +EK  +V     W +++
Sbjct: 365 GEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVS----WTSMI 419

Query: 459 GACKIHENVE--LAEYACSHLLELEPENHG 486
                H+  E  LA +       + P+N G
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
           ++IHA    +G+  +  +   LID+Y K G + +A +VF  + SRD   W  M++G+A  
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           G G+EA  L+S+M    V P     ++VL AC+   L  +GRM   Q+
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/647 (40%), Positives = 377/647 (58%), Gaps = 52/647 (8%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           VI+ P H  P  ++ ++   HH   +   +  C  I QLKQ+H Q +RT     P   + 
Sbjct: 6   VIAPPSHL-PHAISNSDSFTHHRRLLL-FLNSCTCISQLKQLHAQTIRTTSSHHP---NT 60

Query: 76  LFTPCALGTFSSL---EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVY 131
            F    +  FSSL    YA  +F QI  PN + WN LIRA + S +  Q +  ++ +++ 
Sbjct: 61  FFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLE 120

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
                 ++ TFPFV+KA A L     G+ IH  ++K  F+ D++I+NSL+HFYA C  L 
Sbjct: 121 QGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLD 180

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  VF  + ++ +VSWN +I  FV+ G F+ A+ L+ EM+ +  +PD  T+ ++ +ACA
Sbjct: 181 FAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACA 239

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
               L  G W +    +F    L K  + D                           +  
Sbjct: 240 GMGSLSLGMWAH----VF----LLKKFDAD---------------------------RVN 264

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
            + LN  L    +DMY KCG+L+ AL++FH +  RDV  W++MI GF+ +G    AL+ F
Sbjct: 265 DVLLNTSL----VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYF 320

Query: 372 SRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             M +  K+ PNA+TF  VL AC+H GLV EGR +F+ M   Y + P ++HY C+VD+L 
Sbjct: 321 GCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLA 380

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGA-CKIHENVELAEYACSHLLELEPE-NHGAL 488
           RAGL+DEA++ +  MP+ P   +W +LL A CK +  VEL+E     +LE E     G  
Sbjct: 381 RAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVY 440

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLS +YA   +W++V  +RK M   G+ KEPGCSSIE++G  H+F AG++SHP  +EIY
Sbjct: 441 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 500

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
           S LD I  R++  GY P+ S    + E  D ++ +L LHSERLAIA+GL+  +P  PIRI
Sbjct: 501 SALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRI 560

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLRVC +CH V KLIS+++NREI++RDR RFHHF+ G CSCMDYW
Sbjct: 561 FKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/574 (43%), Positives = 362/574 (63%), Gaps = 19/574 (3%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           LF+ C L     + YAR++FD      + TWN ++  Y+      +S  +F+++      
Sbjct: 180 LFSLCGL-----VNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCEC 234

Query: 136 F-PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMA 193
             PN  T   ++ A ++L     G+ I+   IK    E +L + N+LI  +A CG++  A
Sbjct: 235 VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAA 294

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  +  +DV+SW S+++GF      + A + + +M     + D V+  A++      
Sbjct: 295 RGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMP----ERDYVSWTAMIDGY--- 347

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
             L   R+  E L++F ++Q+S NV PDEFT VS+L+ACA LGA+++G      + K  I
Sbjct: 348 --LRMNRF-KEVLTLFRDMQMS-NVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKI 403

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
           K + ++  +LIDMY KCGN++KA ++F+ ++ +D F W+ MI G A  G G EAL +FS 
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M EA V P+ +T+  V+CAC+H GLV +G+ FF+ M   +G+ P + HY CMVD+LGRAG
Sbjct: 464 MLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAG 523

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            L EA+E I  MP+ P + VWG+LLGAC++H+NV+LAE A + +LELEPEN    VLL N
Sbjct: 524 HLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCN 583

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           IYA   KW N+  +RK M   G+KK PGCS +E+NG +++F+AG+ SHP  KEIY+KL+ 
Sbjct: 584 IYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLEN 643

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           +   L + GY P+ S +   V EED +E AL +HSE+LAIAY LIS      IRIVKNLR
Sbjct: 644 MKQDLSNAGYSPDTSEVFLDVGEED-KETALYMHSEKLAIAYALISSGKGVTIRIVKNLR 702

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           +C DCH +A ++SK+YNRE+++RD+ RFHHFR G
Sbjct: 703 MCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 229/454 (50%), Gaps = 27/454 (5%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           H     P+ SL++ C  + ++ QIH+Q ++TGL  +    +K+   C       + YAR+
Sbjct: 32  HSFVKSPI-SLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARK 90

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF-LQLVYNSPYFPNEFTFPFVIKAAARL 152
           +FD+IPQP+++ WNT+I+ YS          ++ L LV+N    P+ FTFPF++K   + 
Sbjct: 91  VFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIK--PDGFTFPFLLKGFTKD 148

Query: 153 VQFRVGQA-IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +  + G+  ++  VI    + +LF+    IH +++CG +  A  +F M    +VV+WN +
Sbjct: 149 MALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVV 208

Query: 212 ISGFVQGGFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +SG+ +   +E++  L+ EME   E V P+ VT+V +LSAC+K +DL  G+       I+
Sbjct: 209 LSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGK------CIY 262

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           ++      V P+     +++   A  G MD    +  +MK + +       TS++  +  
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDV----ISWTSIVTGFAN 318

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
              +D A + F  +  RD   W+ MI G+      +E L LF  MQ + VKP+  T  ++
Sbjct: 319 TCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSI 378

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRAGLLDEAVEFIEKM 445
           L AC+H G ++ G     +    Y     +K+ T     ++DM  + G +++A +   +M
Sbjct: 379 LTACAHLGALELG-----EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM 433

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
                   W A++     + + E A    S++LE
Sbjct: 434 Q-KKDKFTWTAMIVGLANNGHGEEALTMFSYMLE 466


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/619 (39%), Positives = 366/619 (59%), Gaps = 50/619 (8%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE-MFDQIPQ 100
            +L++ C  + +L QIHT +L+ GL  +P   +K  +  +L    + +YA   +F     
Sbjct: 33  LALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSL--IHATDYAASFLFSAEAD 90

Query: 101 PNLYT---WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             LY    +NTLIRAY+ +       +    ++ +    PN+FT+PFV+KA A L    +
Sbjct: 91  TRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNL 150

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           GQ +HG V+K  F+ D+ + N+++H Y+ C G +  A  VF  + K D V+W++MI G+ 
Sbjct: 151 GQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYA 210

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G                                            EA+++F E+Q+++
Sbjct: 211 RVG-----------------------------------------RSTEAVALFREMQMAE 229

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PDE T VS+LSAC  LGA+++G  I A +++  I     ++ +LIDM+ KCG++ KA
Sbjct: 230 -VCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKA 288

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           L++F  +  + +  W+++I G AM+G G+EA  LF  M  + V P+ V F  +L ACSHS
Sbjct: 289 LKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHS 348

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+ GR +F  M   Y +VP ++HY CMVDM  R GL+ EA+EF+  MPI P   +   
Sbjct: 349 GLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRT 408

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           L+ AC+ H   +L E     L++ EP +    VLLSNIYAKT  W+  +++R+ M V G+
Sbjct: 409 LVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGM 468

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG + IE++ EI++F+AG+ SH   KEIY  +DE+   +K  GY P+ S +L  + E
Sbjct: 469 KKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINE 528

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E +LN HSE+LAIA+GL+   P  PIRIVKNLRVC DCH+ +K ISK+Y+REI++R
Sbjct: 529 ED-KEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMR 587

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFHHF+ G CSC D+W
Sbjct: 588 DRNRFHHFKSGQCSCGDFW 606


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 375/653 (57%), Gaps = 41/653 (6%)

Query: 35  QHHPHPVFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY 90
           Q  P     L+ Q      +I+ L+ +H++++   L  +     KL    A  +   +  
Sbjct: 35  QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMR--AYASLKDVAS 92

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD+IP+ N+   N +IR+Y ++    +   +F  +       P+ +TFP V+KA +
Sbjct: 93  ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC-GCNVRPDHYTFPCVLKACS 151

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                 +G+ IHG   K      LF+ N L+  Y  CG L+ A  V   + ++DVVSWNS
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNS 211

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--------RDLEF--GR 260
           ++ G+ Q   F+ A+E+ REME   +  D  TM ++L A +          +D+ F  G+
Sbjct: 212 LVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGK 271

Query: 261 -----W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                W            P EA+ ++  ++ +    PD  +  SVL AC    A+ +G +
Sbjct: 272 KSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           IH  ++++ +  N  L  +LIDMY KCG L+KA +VF  +KSRDV  W+ MI+ +   G 
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           G +A+ LFS++Q++ + P+++ F   L ACSH+GL++EGR  F  M   Y + P ++H  
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 450

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMVD+LGRAG + EA  FI+ M + P   VWGALLGAC++H + ++   A   L +L PE
Sbjct: 451 CMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
             G  VLLSNIYAK G+W+ V+ +R  M+  GLKK PG S++EVN  IH FL G+ SHP 
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 570

Query: 544 CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV--- 600
             EIY +LD +V ++K  GYVP+    L  VEEED +E  L +HSE+LAI + L++    
Sbjct: 571 SDEIYRELDVLVKKMKELGYVPDSESALHDVEEED-KETHLAVHSEKLAIVFALMNTKEE 629

Query: 601 --EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
             + +  IRI KNLR+CGDCH  AKLIS++ +REI++RD  RFH FR G CSC
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/604 (40%), Positives = 359/604 (59%), Gaps = 50/604 (8%)

Query: 54   LKQIHTQMLRTGLFFDPYSASKLFTPCALG--TFSSLEYAREMFDQIPQPNLYTWNTLIR 111
            LK+ H ++   GL +D    S++ T  A+   +F+ ++ A  +F+ IP P  + WN +IR
Sbjct: 736  LKKTHAKIFAYGLQYD----SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIR 791

Query: 112  AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
             +++    + S  ++ +++      P++F FPF +K+ A L   + G+ IH  ++     
Sbjct: 792  GFATDGRFLSSLELYSKMM-EKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCS 850

Query: 172  DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            +DLF+  +L+  YA CGD+  A  VF  +  +D+VSW SMISG+   G+           
Sbjct: 851  NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGY----------- 899

Query: 232  EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                                           +E L  F +L  S  V P+  + +SVL A
Sbjct: 900  ------------------------------NSETLGFF-DLMRSSGVIPNRVSILSVLLA 928

Query: 292  CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
            C  LGA+  G   H+ + + G + +  + T+++DMY+KCG+LD A  +F     +D+  W
Sbjct: 929  CGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCW 988

Query: 352  STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
            S MIA + ++G GR+A+DLF +M +A V+P+ VTFT VL ACSHSGL++EG+M+F  M  
Sbjct: 989  SAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTE 1048

Query: 412  VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
             + +   + +Y CMVD+LGRAG L EAV+ IE MP+ P AS+WG+LLGAC+IH N++LAE
Sbjct: 1049 EFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAE 1108

Query: 472  YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
                HL  L+P + G  VLLSNIYA   +W+ V ++RK M   G  K  G S +E + ++
Sbjct: 1109 KIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQV 1168

Query: 532  HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
            HKF  G+ SHP  +++Y+KL+E+ A +K  GYVP    +L  +EEE  +E AL+ HSERL
Sbjct: 1169 HKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEE-AKEAALSYHSERL 1227

Query: 592  AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
            AIA+GLI+  P   +RI KNLR+CGDCH   KLISK+ NR IL+RD +RFH F  G CSC
Sbjct: 1228 AIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSC 1287

Query: 652  MDYW 655
             DYW
Sbjct: 1288 GDYW 1291



 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 303/542 (55%), Gaps = 60/542 (11%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++F++  +P+   W +++  Y  + +P ++  +F Q+V       +  T   V+ A A
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACA 217

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           +L+  + G  +HG+VI+  F+ DL + NSL++ YA  G   +A  +F  + +KDV+SW++
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 277

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------W-- 261
           MI+ +       +A+ L+ EM  +  +P+ VT+V+ L ACA  R+LE G+       W  
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337

Query: 262 --------------------PNEALSIFHEL----------------------------- 272
                               P+EA+ +F  L                             
Sbjct: 338 FELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFR 397

Query: 273 -QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
             LS  + PD    V +L+A ++LG     + +H  + + G   N ++  SLI++Y+KCG
Sbjct: 398 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCG 457

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVL 390
           +L  A+++F  +  RDV +WS+MIA + ++G G EAL++F +M + + V+PN VTF ++L
Sbjct: 458 SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSIL 517

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSH+GLV+EG   F++M   Y + P  +H+  MVD+LGR G L +A++ I +MPI  G
Sbjct: 518 SACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAG 577

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALLGAC+IH N+E+ E A  +L  L+P + G  +LLSNIYA  GKWDNV+ELR  
Sbjct: 578 PHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTR 637

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           ++  GLKK  G S +EV G +H FLA +  HP  ++IY  L ++ A++    Y+P+   L
Sbjct: 638 IKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFL 697

Query: 571 LQ 572
           L 
Sbjct: 698 LH 699



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 209/420 (49%), Gaps = 54/420 (12%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQ 100
           L + C N + + Q+H+Q+ +TG+  D + A+KL   +  CA     SL+ AR++FD+ P 
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVFDETPH 64

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN++ WN+ +R+Y    +  ++  +F  ++  +   P+ FT P  +KA A L    +G+ 
Sbjct: 65  PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKV 124

Query: 161 IHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           IHG   K+     D+F+ ++L+  Y+ CG +  A  VF    + D V W SM++G+ Q  
Sbjct: 125 IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNN 184

Query: 220 FFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
             E+A+ L+ +M M + V  D VT+V+V+SACA+  +++ G       S  H L + +  
Sbjct: 185 DPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG-------SCVHGLVIRREF 237

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           + D     S+L+  A+ G   I   + +KM +                            
Sbjct: 238 DGDLPLVNSLLNLYAKTGCEKIAANLFSKMPE---------------------------- 269

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
                  +DV  WSTMIA +A      EAL+LF  M E + +PN+VT  + L AC+ S  
Sbjct: 270 -------KDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           ++EG+   +++    G        T ++DM  +    DEAV+  +++P     S W ALL
Sbjct: 323 LEEGKK-IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVS-WVALL 380



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 39/235 (16%)

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           Q+H+++ K GI  + +  T L  +Y KC +L  A +VF      +V +W++ +  +    
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 363 CGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
              E L LF  M   A   P+  T    L AC+   +++ G++     +    +   +  
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA--------------------- 460
            + +V++  + G + EA++  E+    P   +W +++                       
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMD 200

Query: 461 CKIHENVELAEY--ACSHLLELEPEN--HGALVL------------LSNIYAKTG 499
           C + + V L     AC+ LL ++  +  HG ++             L N+YAKTG
Sbjct: 201 CVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTG 255


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 261/653 (39%), Positives = 388/653 (59%), Gaps = 60/653 (9%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           V+ + + P P  +T  +   +H + +   + +CK++ QLKQIH   LR+ L   P  ++ 
Sbjct: 2   VLGVIQSPPPQIVT--SKPTNHYNLLLQHLNECKDMSQLKQIHALSLRSTL---PNHSTT 56

Query: 76  LFTPCALGTFSSL---EYAREMFDQIPQPNLYTWNTLIRAYSSSAE---PIQSFMIFLQL 129
           LF    +  FSSL    YA  +FDQ+  PN + WN LIRA + S       ++ +++  +
Sbjct: 57  LFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTM 116

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           +  S  FP+  TFPFV+KA A L     G+  H  ++K  F+ D++I+NSLIHFYA CG 
Sbjct: 117 LQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGS 176

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A  VF  + ++ +VSWN+MI  FV  G FE A++L+ + + +  +P           
Sbjct: 177 LESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEP----------- 225

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KM 308
                                          D +T  SV++ACA L A+ +G+  HA  +
Sbjct: 226 -------------------------------DGYTIQSVINACAGLCALSLGMWAHAFLL 254

Query: 309 KKQGIKL---NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
           +  G+ +   +  +  SL+DMY KCG+LD A ++F  ++  DV  W++MI GFAM+G G 
Sbjct: 255 RNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGE 314

Query: 366 EALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            AL+ F RM + ++  PN++TF  VL AC+H  +V+EGR +F+ M   Y + P ++HY C
Sbjct: 315 LALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGC 374

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELE-P 482
           +VD+L RAGL+DEA+E +  MP+ P   +W +LL +C K + +VEL+E     +LE E  
Sbjct: 375 LVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEA 434

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
           ++ G  VLLS +YA   +W++V  +RK M  +G+ KEPGCS IEV+G  H+F AG++SHP
Sbjct: 435 DSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHP 494

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
             KEIY  L+ +  R+ S GY P+ S    + E    +  +L LHSERLAIA GL++++P
Sbjct: 495 QTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKP 554

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             PIRI KNLRVC DCH V  LIS+++N EI++RDR RFHHF+ G+CSCMDYW
Sbjct: 555 GMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/664 (38%), Positives = 369/664 (55%), Gaps = 71/664 (10%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           ++IH +++  GL  D    + L +  A     S+  AR +FD +   +  +W TL  AY+
Sbjct: 149 REIHVRVMEAGLANDTTVGNALISMYA--KCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 115 SSA---EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            S    E ++++   LQ        P+  T+  V+ A   L     G+ IH  +++S + 
Sbjct: 207 ESGYGEESLKTYHAMLQ----ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D+ +S +L   Y  CG    A  VF  +  +DV++WN+MI GFV  G  E+A   +  M
Sbjct: 263 SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322

Query: 232 EMENVKPDEVTMVAVLSACAK--------------------------------------- 252
             E V PD  T   VLSACA+                                       
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSM 382

Query: 253 -----------KRDLE-----FGRWPN-----EALSIFHELQLSKNVNPDEFTFVSVLSA 291
                      KRD+       GR+ +     E+ + F ++ L + V  ++ T++ VL A
Sbjct: 383 KDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM-LQQGVKANKITYMCVLKA 441

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           C+   A+  G +IHA++ K G+  +  +T +L+ MY KCG+++ A+ VF  +  RDV  W
Sbjct: 442 CSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTW 501

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +T+I G    G G EAL  +  M+   ++PNA TF NVL AC    LV+EGR  F  M  
Sbjct: 502 NTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSK 561

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            YG+VP  KHY CMVD+L RAG L EA + I  +P+ P A++WGALL AC+IH NVE+ E
Sbjct: 562 DYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGE 621

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A  H L+LEP+N G  V LS IYA  G W +V++LRK M+  G+KKEPG S IE+ GE+
Sbjct: 622 RAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEV 681

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           H F+A + SHP  +EIY++L+ +  ++KS GYVP+   ++  +++E  +E+A+  HSE+L
Sbjct: 682 HSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEG-KERAVCHHSEKL 740

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           AIAYGLIS  P  PIRI KNLRVC DCHT  K ISK+  REI+ RD +RFHHF+ G CSC
Sbjct: 741 AIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSC 800

Query: 652 MDYW 655
            DYW
Sbjct: 801 GDYW 804



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 199/435 (45%), Gaps = 56/435 (12%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGT 84
             G Q   +    L++ C   K L   KQ+H  +LR G+  + Y  +   KL+  C    
Sbjct: 21  RKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCG--- 77

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
             S+  AR++FD+    ++ +WN +I  Y+      ++F +F  L+      P++FTF  
Sbjct: 78  --SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF-TLMQQERLEPDKFTFVS 134

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++ A +       G+ IH  V+++   +D  + N+LI  YA CG +  A  VF  +  +D
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            VSW ++   + + G+ E++++ Y  M  E V+P  +T + VLSAC              
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSAC-------------- 240

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                         L A++ G QIHA + +     +  ++T+L 
Sbjct: 241 ----------------------------GSLAALEKGKQIHAHIVESEYHSDVRVSTALT 272

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY KCG    A EVF  +  RDV  W+TMI GF   G   EA   F RM E  V P+  
Sbjct: 273 KMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRA 332

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+T VL AC+  G +  G+    +     G+V  V+    +++M  +AG + +A +  ++
Sbjct: 333 TYTTVLSACARPGGLARGKEIHARAAK-DGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 445 MPIVPGASVWGALLG 459
           MP     S W  LLG
Sbjct: 392 MPKRDVVS-WTTLLG 405



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 104/200 (52%), Gaps = 8/200 (4%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P + L   H     K    D + +V +L +C +   + +G Q+H  + + G+K N Y+T 
Sbjct: 12  PADVLQYLHR----KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITN 67

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ +Y  CG++++A ++F    ++ V  W+ MI+G+A  G  +EA +LF+ MQ+ +++P
Sbjct: 68  TLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEP 127

Query: 382 NAVTFTNVLCACSHSGLVDEGR-MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           +  TF ++L ACS   +++ GR +    ME   G+         ++ M  + G + +A  
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEA--GLANDTTVGNALISMYAKCGSVRDARR 185

Query: 441 FIEKMPIVPGASVWGALLGA 460
             + M      S W  L GA
Sbjct: 186 VFDAMASRDEVS-WTTLTGA 204


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/550 (43%), Positives = 355/550 (64%), Gaps = 13/550 (2%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN LI  ++ S     S   F+ +V  S       T+  V+ A  +     +G  +H  V
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASA-MATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           ++S    D  + N+L+  YA CGD+  A+ +F  +  + + SW S+ISG V+ G  ++A 
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           +L+  M     + D +   A++        ++ GR+  +AL  F  +Q+ K V  DEFT 
Sbjct: 248 DLFDHMP----ERDTIAWTAMIDGY-----VQVGRF-RDALETFRYMQICK-VRADEFTM 296

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           VSV++ACAQLGA++ G      M + GIK++ ++  +LIDMY+KCG++++AL+VF  + +
Sbjct: 297 VSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHN 356

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           RD F W+ +I G A+ G G EA+D+F RM  A   P+ VTF  VL AC+H+GLVD+GR F
Sbjct: 357 RDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREF 416

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F  M   Y + P V HY C++D+LGRAG L EA++ I+KMP+ P +++WG LL +C+++ 
Sbjct: 417 FLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYG 476

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           N E+ E A   LLEL+P+N  A +LLSN+YAK+ +W +V  +R+ +   G+KKEPGCS I
Sbjct: 477 NSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMI 536

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           E+NG IH+F+A + SHP+ KEIYSKL+ ++  L++ GYVP+ + +L  V EE  +++ L 
Sbjct: 537 EMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEE-EKQKVLY 595

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+ + L++ E +  IRIVKNLR+C DCH   KLISKLY RE+++RDR RFHHFR
Sbjct: 596 WHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFR 655

Query: 646 GGNCSCMDYW 655
            G+CSC DYW
Sbjct: 656 HGSCSCKDYW 665



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 170/371 (45%), Gaps = 32/371 (8%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +L  AR + D IP       ++ +  + +  E +  ++  L         P+ +TFP ++
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSGHGAE-EAVAGYVRMLA----GGARPDAYTFPSLL 58

Query: 147 KAAARLVQFRVGQA-----IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF---- 197
           KAAA      V  A     IH  V+K   E +   ++SLI  YA  GD A A  V     
Sbjct: 59  KAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAAC 118

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
           +  G    V WN++ISG  + G FE +   + +M   +     VT V+VLSAC K +DL 
Sbjct: 119 LATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLL 178

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
            G          H+  L   V PD+    +++   A+ G MD    +   M+ + +    
Sbjct: 179 LGMQ-------VHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMA--- 228

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
              TS+I    + G +D+A ++F  +  RD   W+ MI G+   G  R+AL+ F  MQ  
Sbjct: 229 -SWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQIC 287

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEG---RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           KV+ +  T  +V+ AC+  G ++ G   R++  ++     V  G      ++DM  + G 
Sbjct: 288 KVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVG----NALIDMYSKCGS 343

Query: 435 LDEAVEFIEKM 445
           ++ A++  + M
Sbjct: 344 IERALDVFKDM 354



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 49/279 (17%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           ++ AR++FD +P+ +   W  +I  Y       + +++F  ++Q+        +EFT   
Sbjct: 243 VDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFR-YMQIC---KVRADEFTMVS 298

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+ A A+L     G+     + +   + D+F+ N+LI  Y+ CG +  A  VF  +  +D
Sbjct: 299 VVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRD 358

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
             +W ++I G    G  E+AI+++  M      PDEVT V VL+AC     ++ GR    
Sbjct: 359 KFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR---- 414

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
               F  +  + N++P    +      C                              LI
Sbjct: 415 --EFFLSMTEAYNISPTVVHY-----GC------------------------------LI 437

Query: 325 DMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYG 362
           D+  + G L +AL+    +  + +  +W T++A   +YG
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYG 476



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 15/270 (5%)

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLS-----ACAQLGAMDIGVQIHAKMKKQGI 313
           G    EA++ +  + L+    PD +TF S+L        A + A  +G  IHA + K G+
Sbjct: 29  GHGAEEAVAGYVRM-LAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGM 87

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFH----TVKSRDVFVWSTMIAGFAMYGCGREALD 369
           + N +  +SLI MY   G+   A  V              +W+ +I+G    G    +  
Sbjct: 88  ESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCC 147

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
            F  M  A     AVT+ +VL AC     +  G M  ++     GV+P  +    +VDM 
Sbjct: 148 SFVDMVRASAMATAVTYVSVLSACGKGKDLLLG-MQVHKRVLESGVLPDQRVENALVDMY 206

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
              G +D A    E M +   AS W +++        V+ A     H+ E +     A++
Sbjct: 207 AECGDMDAAWVLFEGMQMRSMAS-WTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMI 265

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
              + Y + G++ +  E  ++M++  ++ +
Sbjct: 266 ---DGYVQVGRFRDALETFRYMQICKVRAD 292


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/629 (40%), Positives = 377/629 (59%), Gaps = 57/629 (9%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL---EYARE 93
           H      L+  C ++ +LKQIH Q +R    F  +++S LF    +   SSL   +YA  
Sbjct: 24  HQSRFLHLLTDCTDLSKLKQIHAQAIRN---FSTHNSS-LFLYSRILHVSSLIDFDYACR 79

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           +F+QI  PN + WNTLI A + S +   Q+  IF +++      P++ TFPF++KA A +
Sbjct: 80  VFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYV 139

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+  H  + K   + D+++ NSLIH YA CG L+MA  VF  +  + +VSWN MI
Sbjct: 140 FALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 199

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
             +VQ G FE A++L+  +EM+N                                     
Sbjct: 200 DAYVQSGLFENALKLF--VEMQN------------------------------------- 220

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG---IKLNCYLTTSLIDMYTK 329
               +  PD +T  S++SACA +GA+ +G+  HA + ++    +  +  + +SL+DMY+K
Sbjct: 221 ----SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSK 276

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTN 388
           CG+L  A +VF T+   D+  W++MI   AM+G G+ AL  FSR+ E  K  PN+VTF  
Sbjct: 277 CGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVG 336

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VL AC+H G+V +GR +F+ M   Y + P ++HY C+VD+L R+G +DEA+E +  M I 
Sbjct: 337 VLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIK 396

Query: 449 PGASVWGALLGAC-KIHENVELAEYACSHLLELEPE-NHGALVLLSNIYAKTGKWDNVSE 506
           P A +W +LL AC K +  VEL+E     +L+ E   + G  V+LS +YA   +W++V  
Sbjct: 397 PDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGI 456

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK M   G+ KEPGCSSIE++G  H+F AG++SHP  KEIY  +D I  +L+  GY P+
Sbjct: 457 IRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPD 516

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S    + E +++++Q+L LHSERLAIA+GL++++P  P+RI KNLRVC DCH V KLIS
Sbjct: 517 CSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLIS 576

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +++N EI++RDR RFHHF+ G CSCMD+W
Sbjct: 577 EIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/565 (43%), Positives = 351/565 (62%), Gaps = 20/565 (3%)

Query: 99  PQPNLYTWNTLIRAY-SSSAEPI----QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           P    + WNTLIRA+  + A+P         IF+++ ++    P+  TFPF++++ A   
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQ-PDFHTFPFLLQSFASPS 78

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
              +G+++H  +++     D F+  SLI  Y+ CG+L  A  VF  I + D+ SWNS+I+
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIIN 138

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
              Q G  + A  L+  M   NV         +  +C     +  G++  EAL++F E+Q
Sbjct: 139 ANFQAGLVDMARNLFAVMPERNV---------ISWSCMINGYVRCGQY-KEALALFREMQ 188

Query: 274 L--SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +    +V P+EFT   VL+AC +LGA++ G   HA + K G+ ++  L T+LIDMY KCG
Sbjct: 189 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 248

Query: 332 NLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           +++KA  VF  +  ++DV  WS MI+G AM+G   E + LFS+M    V+PNAVTF  V 
Sbjct: 249 SVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVF 308

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           CAC H GLV EG+ +  +M   Y ++P ++HY CMVD+ GRAG + EA   ++ MP+ P 
Sbjct: 309 CACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD 368

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALL   ++H ++E  E A   L+ELEP N GA VLLSN+YAK G+W++V  +R  
Sbjct: 369 VLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDL 428

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G+KK PGCS IEV G +H+F  G+ SHP  ++I+  L+EI+ RLK  GYV N   +
Sbjct: 429 METMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEV 488

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  ++EE  +E AL+LHSE+LA+AYG +   P  PIRIVKNLR+C DCH   K+ISK+++
Sbjct: 489 LLDLDEEG-KELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFD 547

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHF  G CSC DYW
Sbjct: 548 REIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 78/343 (22%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA-- 112
           + +H Q+LR GL  DP+  + L +     +  +L +AR++FD+IPQP+L +WN++I A  
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLIS--MYSSCGNLGFARQVFDEIPQPDLPSWNSIINANF 141

Query: 113 -----------------------------YSSSAEPIQSFMIF--LQLVYNSPYFPNEFT 141
                                        Y    +  ++  +F  +Q++  +   PNEFT
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A  RL     G+  H  + K     D+ +  +LI  YA CG +  A  VF  +G
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 261

Query: 202 -KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             KDV++W++MISG    G  E+ + L+ +M  + V+P+ VT +AV  AC     +  G+
Sbjct: 262 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 321

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                          + +  D     S++      G M                      
Sbjct: 322 ------------DYLRRMTED----YSIIPTIQHYGCM---------------------- 343

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYG 362
              +D+Y + G + +A  V  ++    DV VW  +++G  M+G
Sbjct: 344 ---VDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 383


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/520 (45%), Positives = 335/520 (64%), Gaps = 12/520 (2%)

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ FT  FV+KA  +L     G+ IHG+  K  F  +LF+ N +++ Y +CG++  A  
Sbjct: 7   LPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML 66

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           +F  + ++D V+WN +I+   + G  + A   +  M  +NV+    +M++    C K   
Sbjct: 67  LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRS-WTSMISGFVQCGK--- 122

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                 PNEA+ +F +L+  + V P+E T VSVL+ACA LG +D+G  +H    K G K 
Sbjct: 123 ------PNEAIDLFMKLE-DEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR 175

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N ++  +LIDMY KCG L+ A  VF+ ++ R V  WS MIAG AM+G   EAL LFS M 
Sbjct: 176 NVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMI 235

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           +  VKPN VTF  +L ACSH GL+DEGR FF  M   YGV+P ++HY C+VD+  RAGLL
Sbjct: 236 KLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLL 295

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           +EA EFI  MPI P   VWGALLG CK+H+N++LAE A  HL EL+P N G  V++SNIY
Sbjct: 296 EEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIY 355

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A+  +W++ + +RK M+  G+KK  G SSI VNG +H+F+AG+ +HP  ++I    D+++
Sbjct: 356 AEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLL 415

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            ++K  GY P  S +L  +EE++ +E+ L  HSE+LA+ +GL++     PIRI+KNLRVC
Sbjct: 416 VKMKRRGYAPKTSVVLLDMEEKE-KEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVC 474

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH   K+IS + +REI++RDR RFH FR G CSC D+W
Sbjct: 475 EDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 45/255 (17%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFD 96
           ++K C  +  +   K IH      GLF      S LF    +    G    +  A  +F+
Sbjct: 16  VLKACLKLSDVVNGKTIH------GLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFE 69

Query: 97  QIPQPNLYTWNTLI------------------------RAYSS-------SAEPIQSFMI 125
           ++PQ +  TWN +I                        R+++S         +P ++  +
Sbjct: 70  KMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDL 129

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           F++L  +    PNE T   V+ A A L    +G+ +H    KS F+ ++ + N+LI  Y 
Sbjct: 130 FMKL-EDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYV 188

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
            CG L  A  VF  + ++ VVSW++MI+G    G  E+A+ L+ EM    VKP+ VT + 
Sbjct: 189 KCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIG 248

Query: 246 VLSACAKKRDLEFGR 260
           +L AC+    ++ GR
Sbjct: 249 LLHACSHMGLIDEGR 263



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 15/257 (5%)

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M + +V PD  T   VL AC K  D+  G+  +    +F +L    N+    F    +L+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIH---GLFQKLGFGSNL----FLQNMILN 53

Query: 291 ACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
                G M   + +  KM ++  +  N      +I    K G++D A   F  + +++V 
Sbjct: 54  LYGLCGEMGDAMLLFEKMPQRDAVTWNI-----VIAQLAKRGDIDGAYGFFLRMPNKNVR 108

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W++MI+GF   G   EA+DLF ++++  V+PN VT  +VL AC+  G +D GR+  ++ 
Sbjct: 109 SWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRI-VHEY 167

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
               G    V     ++DM  + G L+ A     +M      S W A++    +H   E 
Sbjct: 168 STKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVS-WSAMIAGLAMHGQAEE 226

Query: 470 AEYACSHLLELEPENHG 486
           A    S +++L  + +G
Sbjct: 227 ALCLFSEMIKLGVKPNG 243


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 366/616 (59%), Gaps = 47/616 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +  +  Q  +I     IH  +++ GL FD + ++ L    A   F +LE AR+ F Q+  
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA--KFGNLEDARKAFQQMFI 379

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WN++I AY  + +P+ +   F+++  N  + P+  T   +    A+    +  ++
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG-FQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 161 IHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +HG +++  +  +D+ I N+++  YA  G L  A+ VF +I  KDV+SWN++I+G+ Q G
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNG 498

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +AIE                                         ++  ++  K + 
Sbjct: 499 LASEAIE-----------------------------------------VYKMMEECKEII 517

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P++ T+VS+L A A +GA+  G++IH ++ K  + L+ ++ T LID+Y KCG L  A+ +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ V       W+ +I+   ++G   + L LF  M +  VKP+ VTF ++L ACSHSG V
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+  F  M+  YG+ P +KHY CMVD+LGRAG L+ A +FI+ MP+ P AS+WGALLG
Sbjct: 638 EEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLG 696

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH N+EL ++A   L E++ +N G  VLLSNIYA  GKW+ V ++R   R  GLKK 
Sbjct: 697 ACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 756

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S+IEVN ++  F  G  SHP CKEIY +L  + A++KS GY+P+ S +LQ V EED 
Sbjct: 757 PGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDV-EEDE 815

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSERLAIA+G+IS  P  PIRI KNLRVCGDCH   K IS++  REI++RD  
Sbjct: 816 KEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSN 875

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC DYW
Sbjct: 876 RFHHFKDGICSCGDYW 891



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 241/515 (46%), Gaps = 76/515 (14%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H  ++  G     + +++L    A      +  +R  FDQIPQ ++Y WN++I AY 
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    ++   F QL+  S   P+ +TFP V+KA   LV    G+ IH    K  F+ ++
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 250

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F++ SLIH Y+  G   +A  +F  +  +D+ SWN+MISG +Q G   +A+++  EM +E
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 235 NVKPDEVTMVAVLSACAK---------------KRDLEFGRWPNEAL------------- 266
            +K + VT+V++L  C +               K  LEF  + + AL             
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 267 --------------------------------SIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                             F ++QL+    PD  T VS+ S  AQ
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLN-GFQPDLLTLVSLASIVAQ 429

Query: 295 LGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                    +H  + ++G  + +  +  +++DMY K G LD A +VF  +  +DV  W+T
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 489

Query: 354 MIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +I G+A  G   EA++++  M+E K + PN  T+ ++L A +H G + +G     ++   
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT 549

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
             +   V   TC++D+ G+ G L +A+    ++P    +  W A++    IH + E    
Sbjct: 550 -NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLK 607

Query: 473 ACSHLLE--LEPENHGALVLLS----NIYAKTGKW 501
               +L+  ++P++   + LLS    + + + GKW
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/626 (37%), Positives = 370/626 (59%), Gaps = 49/626 (7%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           H+    P   +++ C  + +L Q+HT +++ G   +P   +K  +  A     ++ YA  
Sbjct: 3   HRAVEQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTS--ASSNLDAIPYAMS 60

Query: 94  MFDQIPQPNLYT---WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           +   +    +Y    ++T+IRAY+ S++   + + +  L+      PN++ FPFV+KA A
Sbjct: 61  LVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACA 120

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWN 209
            L    +G+A+HG ++K  F+DD+F+ N+++H Y  C G +  A  +F  + K D V+W 
Sbjct: 121 GLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWT 180

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +MI     GG+                        A L   A             A+ +F
Sbjct: 181 AMI-----GGY------------------------ARLGQSAG------------AVGLF 199

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
            ++Q++  V PD+ T VSVLSAC  LGA+++G  I + ++K+ +     L+ +L+DM+ K
Sbjct: 200 RKMQIA-GVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAK 258

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG++DKAL +F  +  R +  W+++I G AM+G G EA+ LF  M+ + + P  + F  +
Sbjct: 259 CGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGL 318

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGLV+ GR +F++M   +G+VP ++HY CMVD+L RAGL+ EA+EF+E+MPI P
Sbjct: 319 LSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEP 378

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  L+ AC++H  ++L E     L+  EP +    VLLSNIY K   W+  S++R 
Sbjct: 379 NPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRV 438

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            M   G++K PG + IE++ EIH+F+ G+ SH    EI   ++E+   +K  GY P  + 
Sbjct: 439 AMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTE 498

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +   ++EED +E AL+ HSE+LAIA+ L++  P  PIRI KNLRVCGDCH+ +K ISK+Y
Sbjct: 499 VFLDIDEED-KEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIY 557

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI++RDR RFHHFR G CSC D+W
Sbjct: 558 NREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 364/617 (58%), Gaps = 44/617 (7%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            + +L++ C ++K+L++IH  ++ +GL      A+KL   CA+    SL YA+ +F Q+ 
Sbjct: 6   AILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P    WN++IR ++ S+ PI + + + Q+V +S   P+ FTF FV+KA  R+   R  +
Sbjct: 66  CPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCK 125

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG VI+  ++ D+ +  +L+  Y+  G + +A  VF  +  +D+V+WN+MIS F Q G
Sbjct: 126 EVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQG 185

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             ++A++ Y +M                                           S+NV+
Sbjct: 186 LHQEALQTYNQMR------------------------------------------SENVD 203

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D FT V ++S+CA LGA++IGVQ+H   ++ G+  + Y+  +LIDMY KCG+LD+A+ +
Sbjct: 204 IDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILI 263

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ +D+F W++MI G+ ++G G EA+  F +M EA+++PN VTF  +LC CSH GLV
Sbjct: 264 FDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLV 323

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG  +FN M   + + P VKHY C+VD+ GRAG LD+A+E +        + +W  LLG
Sbjct: 324 QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLWRILLG 382

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +CKIH+NV + E A + L EL   + G  +LL+ IYA       V+ +RK ++  G K  
Sbjct: 383 SCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTT 442

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS-HLLQLVEEED 578
           PG S IE+  ++HKF+  + SH    E+Y KL E++ +   FGYV + S   L ++   +
Sbjct: 443 PGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTME 502

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
             + +   HSE+LAIA+GL        IRIVKNLRVC DCH+  K +S  +NREI++RDR
Sbjct: 503 TLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDR 562

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+GG CSC DYW
Sbjct: 563 VRFHHFKGGECSCNDYW 579


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 340/569 (59%), Gaps = 44/569 (7%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +L YAR +FD + + ++ +W  +I AY       +   +F++++     FPNE T   ++
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML-GEGMFPNEITMLSLV 335

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           K         +G+ +H   +++ F   L ++ + I  Y  CGD+  A  VF     KD++
Sbjct: 336 KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLM 395

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            W++MIS + Q    ++A +++  M                + C                
Sbjct: 396 MWSAMISSYAQNNCIDEAFDIFVHM----------------TGCG--------------- 424

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                      + P+E T VS+L  CA+ G++++G  IH+ + KQGIK +  L TS +DM
Sbjct: 425 -----------IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDM 473

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y  CG++D A  +F     RD+ +W+ MI+GFAM+G G  AL+LF  M+   V PN +TF
Sbjct: 474 YANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF 533

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              L ACSHSGL+ EG+  F++M   +G  P V+HY CMVD+LGRAGLLDEA E I+ MP
Sbjct: 534 IGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMP 593

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           + P  +V+G+ L ACK+H+N++L E+A    L LEP   G  VL+SNIYA   +W +V+ 
Sbjct: 594 MRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAY 653

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R+ M+  G+ KEPG SSIEVNG +H+F+ G+  HP  K++Y  +DE+  +L+  GY P+
Sbjct: 654 IRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPD 713

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +L  +++E  +  ALN HSE+LA+AYGLIS  P  PIRIVKNLRVC DCH   KL+S
Sbjct: 714 VSCVLHNIDKEK-KVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLS 772

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+Y REI++RDR RFHHF+ G+CSC DYW
Sbjct: 773 KIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 235/533 (44%), Gaps = 90/533 (16%)

Query: 9   METLSTPVISLPRHPNPTTL-TVNNGHQHH-PHPVFSLIKQCKNIKQLKQ-IHTQMLRT- 64
           M T ++ + S P  P P ++ +  N +Q+H P   F+  +   N+  ++Q +H  +  T 
Sbjct: 1   MVTCNSHLSSAPPSPLPISIHSFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHINLNETQ 60

Query: 65  ---GLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
              G F    S      P  AL ++SS              N    + LI +Y  +  P 
Sbjct: 61  QLHGHFIKTSSNCSYRVPLAALESYSS--------------NAAIHSFLITSYIKNNCPA 106

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
            +  I+  +        N F  P V+KA   +  F +GQ +HG V+K+ F  D+F+ N+L
Sbjct: 107 DAAKIYAYMRGTDTEVDN-FVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNAL 165

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           I  Y+  G LA+A  +F  I  KDVVSW++MI  + + G  ++A++L R+M +  VKP E
Sbjct: 166 IMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSE 225

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP-------------------- 280
           + M+++    A+  DL+ G+  +    +    +  K+  P                    
Sbjct: 226 IGMISITHVLAELADLKLGKAMHA--YVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283

Query: 281 --DEFTFVSVLSACAQLGA------MDIGVQIHAKMKKQGI------------------- 313
             D  +  S++S  A + A      ++ GV++  KM  +G+                   
Sbjct: 284 VFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGA 343

Query: 314 ----------------KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
                            L+  L T+ IDMY KCG++  A  VF + KS+D+ +WS MI+ 
Sbjct: 344 LELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISS 403

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +A   C  EA D+F  M    ++PN  T  ++L  C+ +G ++ G+   + ++   G+  
Sbjct: 404 YAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK-QGIKG 462

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            +   T  VDM    G +D A     +       S+W A++    +H + E A
Sbjct: 463 DMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGHGEAA 514



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + SL+K+C     L   K +H   LR G       A+        G    +  AR +FD 
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFID--MYGKCGDVRSARSVFDS 388

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
               +L  W+ +I +Y+ +    ++F IF+ +       PNE T   ++   A+     +
Sbjct: 389 FKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT-GCGIRPNERTMVSLLMICAKAGSLEM 447

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  + K   + D+ +  S +  YA CGD+  A+ +F     +D+  WN+MISGF  
Sbjct: 448 GKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAM 507

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G  E A+EL+ EME   V P+++T +  L AC+    L+ G+       +FH++
Sbjct: 508 HGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGK------RLFHKM 556


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 365/612 (59%), Gaps = 58/612 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF---DQIPQP---NLYTWNTL 109
           QIH+ +L+ GL  +P   +K     +   F+++ YA  +    DQ   P   + + +NTL
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSS--HFNAVHYASSVLFPNDQTTPPPSHDAFLFNTL 197

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           IRA++ +       + F   +      PN+FTFPFV+KA A +++  +G A+H  ++K  
Sbjct: 198 IRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFG 257

Query: 170 FEDDLFISNSLIHFYAIC------GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           FE+D  + N+L+H Y  C      G ++ A  VF     KD V+W++MI G+ + G   +
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSAR 316

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+ L                                         F E+Q++  V PDE 
Sbjct: 317 AVTL-----------------------------------------FREMQVT-GVCPDEI 334

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T VSVLSACA LGA+++G  + + ++++ I  +  L  +LIDM+ KCG++D+A++VF  +
Sbjct: 335 TMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREM 394

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           K R +  W++MI G AM+G G EA+ +F  M E  V P+ V F  VL ACSHSGLVD+G 
Sbjct: 395 KVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGH 454

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +FN ME ++ +VP ++HY CMVDML RAG ++EA+EF+  MP+ P   +W +++ AC  
Sbjct: 455 YYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHA 514

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
              ++L E     L+  EP +    VLLSNIYAK  +W+  +++R+ M V G++K PG +
Sbjct: 515 RGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGST 574

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            IE+N EI++F+AG+ SH   KEIY  ++E+   +K  GYVP  S +L  ++EED +E A
Sbjct: 575 MIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEED-KEDA 633

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L  HSE+LAIA+ L+S  P  PIRIVKNLRVC DCH+  K ISK+YNREI++RDR RFHH
Sbjct: 634 LYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHH 693

Query: 644 FRGGNCSCMDYW 655
           F+ G CSC D+W
Sbjct: 694 FKNGLCSCGDFW 705


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/727 (35%), Positives = 404/727 (55%), Gaps = 84/727 (11%)

Query: 3   DN-PPQHMETLSTPVISLPRHP------NPTTLTVNNGHQHHPHPVFSLIKQCKN---IK 52
           DN P + + T ++ +  L RH       N        G Q       SL++ C +   ++
Sbjct: 270 DNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALE 329

Query: 53  QLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           Q K++H +M   G   + Y  +    ++T C      S+E A E+FD +   N+ +W  +
Sbjct: 330 QGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-----SMEDALEVFDLVKGRNVVSWTAM 384

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           I  ++      ++F+ F +++  S   PN  TF  ++ A +     + GQ I   +I++ 
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           +  D  +  +L+  YA CG L  A+ VF  I K++VV+WN+MI+ +VQ   ++ A+  ++
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 230 EMEMENVKPDEVT--------------------------------------MVAVLSACA 251
            +  E +KP+  T                                      +V++   C 
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCG 563

Query: 252 K------------KRDL-----------EFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
                        KRDL           + G+  N+    + ++     + PD+ TF  +
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK--NQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L+ACA   A+  G ++HA + +     +  + T LI MYTKCG+++ A +VFH +  ++V
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           + W++MIAG+A +G G+EAL+LF +MQ+  VKP+ +TF   L AC+H+GL++EG   F  
Sbjct: 682 YSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQS 741

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M+  + + P ++HY CMVD+ GRAGLL+EAVEFI KM + P + VWGALLGAC++H NVE
Sbjct: 742 MKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVE 800

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE A    LEL+P ++G  V+LSNIYA  G W  V+++RK M   G+ K+PG S IEV+
Sbjct: 801 LAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVD 860

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G++H F + + +HP  +EI+++L+ +   ++  GYVP+  ++L  VE+ + +EQAL  HS
Sbjct: 861 GKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNE-KEQALFYHS 919

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           ERLAI YGL+   P  PI I KNLRVCGDCHT  K ISK+  R+I+ RD  RFHHF+ G 
Sbjct: 920 ERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGV 979

Query: 649 CSCMDYW 655
           CSC D+W
Sbjct: 980 CSCGDFW 986



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 222/435 (51%), Gaps = 58/435 (13%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +L++ C   KN+   ++I+  + ++G+  D +  + L   +  C   T S    A+++FD
Sbjct: 115 ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCG-NTIS----AKQIFD 169

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            + + ++Y+WN L+  Y       ++F +  Q+V +S   P++ TF  ++ A A      
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-PDKRTFVSMLNACADARNVD 228

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ ++ +++K+ ++ DLF+  +LI+ +  CGD+  A  VF  +  +D+V+W SMI+G  
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G F++A  L++ ME E                                          
Sbjct: 289 RHGRFKQACNLFQRMEEEG----------------------------------------- 307

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PD+  FVS+L AC    A++ G ++HA+MK+ G     Y+ T+++ MYTKCG+++ A
Sbjct: 308 -VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           LEVF  VK R+V  W+ MIAGFA +G   EA   F++M E+ ++PN VTF ++L ACS  
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 397 GLVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
             +  G+   +  +E  YG    V+  T ++ M  + G L +A    EK+        W 
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWN 483

Query: 456 ALLGACKIHENVELA 470
           A++ A   HE  + A
Sbjct: 484 AMITAYVQHEQYDNA 498


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 364/617 (58%), Gaps = 44/617 (7%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            + +L++ C ++K+L++IH  ++ +GL      A+KL   CA+    SL YA+ +F Q+ 
Sbjct: 6   AILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQME 65

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P    WN++IR ++ S+ PI + + + Q+V +S   P+ FTF FV+KA  R+   R  +
Sbjct: 66  CPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCK 125

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG VI+  ++ D+ +  +L+  Y+  G + +A  VF  +  +D+V+WN+MIS F Q G
Sbjct: 126 EVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQG 185

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             ++A++ Y +M                                           S+NV+
Sbjct: 186 LHQEALQTYNQMR------------------------------------------SENVD 203

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D FT V ++S+CA LGA++IGVQ+H   ++ G+  + Y+  +LIDMY KCG+LD+A+ +
Sbjct: 204 VDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILI 263

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ +D+F W++MI G+ ++G G EA+  F +M EA+++PN VTF  +LC CSH GLV
Sbjct: 264 FDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLV 323

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG  +FN M   + + P VKHY C+VD+ GRAG LD+A+E +        + +W  LLG
Sbjct: 324 QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLWRILLG 382

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +CKIH+NV + E A + L EL   + G  +LL+ IYA       V+ +RK ++  G K  
Sbjct: 383 SCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTT 442

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS-HLLQLVEEED 578
           PG S IE+  ++HKF+  + SH    E+Y KL E++ +   FGYV + S   L ++   +
Sbjct: 443 PGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTME 502

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
             + +   HSE+LAIA+GL        IRIVKNLRVC DCH+  K +S  +NREI++RDR
Sbjct: 503 TLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDR 562

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+GG CSC DYW
Sbjct: 563 VRFHHFKGGECSCNDYW 579


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/638 (39%), Positives = 382/638 (59%), Gaps = 25/638 (3%)

Query: 22  HPN----PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           HPN    P +L   +  Q     + SL+++ K+I Q+  IH Q++R G   DP+   +L 
Sbjct: 34  HPNSNSNPKSLKSLDQKQ-----IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELL 88

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
             C+     +++YA  +F     PN+Y +  LI  + SS     +  ++ +++++S   P
Sbjct: 89  RSCS--KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS-ILP 145

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + +    ++KA    +  R G+ +H   +K     +  +   ++  Y  CG+L  A  VF
Sbjct: 146 DNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  +DVV+   MIS +   G  E+A  ++  +     + D V   A++    +  ++ 
Sbjct: 206 EEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVR----RKDTVCWTAMIDGFVRNEEM- 259

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                N AL  F  +Q  +NV P+EFT V VLSAC+QLGA++IG  +H+ M+K  I+LN 
Sbjct: 260 -----NRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 313

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  +LI+MY++CG++D+A  VF  +K RDV  ++TMI+G +M G  R+A++LF  M   
Sbjct: 314 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGR 373

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           +++P  VTF  VL ACSH GLVD G   F+ M   YGV P ++HY CMVD+LGR G L+E
Sbjct: 374 RLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEE 433

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + I  M + P   + G LL ACK+H+N+EL E     L +    + G  VLLS++YA 
Sbjct: 434 AYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYAS 493

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +GKW   +++R  M+ +G++KEPGCSSIEVN EIH+FL G+  HP  + IY KL+E+   
Sbjct: 494 SGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRL 553

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           L+  GY P +  +LQ +E+ + +E AL +HSERLAI YGLIS EP   IR++KNLRVC D
Sbjct: 554 LRLEGYHPEKEVVLQDIEDGE-KEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYD 612

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH+  KLI+K+  R++++RDR RFH+F  G CSC DYW
Sbjct: 613 CHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/638 (39%), Positives = 382/638 (59%), Gaps = 25/638 (3%)

Query: 22  HPN----PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           HPN    P +L   +  Q     + SL+++ ++I Q+  IH Q++R G   DP+   +L 
Sbjct: 34  HPNSNSNPKSLKSLDQKQ-----IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELL 88

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
             C+     +++YA  +F     PN+Y +  LI  + SS   +++  ++ ++++ S   P
Sbjct: 89  RSCS--KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHES-ILP 145

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + +    ++KA    +  R G+ +H   +K  F  +  +   ++  Y  CG+L  A  VF
Sbjct: 146 DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  +DVV+   MIS +   G  E+A  ++  +     + D V   A++    +  +  
Sbjct: 206 EEM-PEDVVASTVMISSYSDQGLVEEAGAVFSRVR----RKDTVCWTAMIDGFVRNEE-- 258

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                N AL  F  +Q  +NV P+EFT V VLSAC+QLGA++IG  +H+ M+K  I+LN 
Sbjct: 259 ----TNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNL 313

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  +LI+MY++CG++D+A  VF  +K RDV  ++TMI+G +M G  R+A++LF  M   
Sbjct: 314 FVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGR 373

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           +++P  VTF  VL ACSH GLVD G   F+ M   Y V P ++HY CMVD+LGR G L+E
Sbjct: 374 RLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEE 433

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + I  M + P   + G LL ACK+H+N+EL E     L +    + G  VLLS++YA 
Sbjct: 434 AYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYAS 493

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +GKW   +++R  M+ +G++KEPGCSSIEVN EIH+FL G+  HP  + IY KL+E+   
Sbjct: 494 SGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRL 553

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           L+  GY P +  +LQ +E+ + +E AL +HSERLAI YGLIS EP   IR++KNLRVC D
Sbjct: 554 LRLEGYHPEKEVVLQDIEDGE-KEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYD 612

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH+  KLI+K+  R+I++RDR RFH+F  G CSC DYW
Sbjct: 613 CHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 373/680 (54%), Gaps = 72/680 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           V SL+  C ++  L   KQ+H+ +L+ G+ FD  +   L   +  C       +E A ++
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG-----DIETAHDI 302

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+   + N+  WN ++ AY   ++  +SF IF Q+     + PN+FT+P +++      Q
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH-PNKFTYPCILRTCTCTGQ 361

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             +G+ IH + IK+ FE D+++S  LI  Y+    L  A  +  M+ K+DVVSW SMI+G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------- 260
           +VQ  F E+A+  ++EM+   V PD + + +  SACA  + +  G               
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 261 ---W------------PNEALSIFHELQLSKNVNPDE----------------------- 282
              W              EA S+F E+     +  +                        
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQ 541

Query: 283 -------FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                  FTF+S +SA A L  +  G Q+H +  K G      +  +LI +Y KCG+++ 
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIED 601

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F  +  R+   W+T+I   + +G G EALDLF +M++  +KPN VTF  VL ACSH
Sbjct: 602 AKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV+EG  +F  M  VYG+ P   HY C+VD+LGRAG LD A  F+++MPI   A +W 
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWR 721

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL ACK+H+N+E+ E A  HLLELEP +  + VLLSN YA TGKW N  ++RK M+  G
Sbjct: 722 TLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRG 781

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++KEPG S IEV   +H F  G+  HPL  +IY  L E+  RL   GY     +L    E
Sbjct: 782 IRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKE 841

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E     A  +HSE+LA+A+GL+++ P  P+R++KNLRVC DCH+  K  S++  REI+L
Sbjct: 842 QEQKDPTAF-VHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVL 900

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD YRFHHF  G+CSC DYW
Sbjct: 901 RDVYRFHHFNSGSCSCGDYW 920



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 188/415 (45%), Gaps = 63/415 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++F ++   +  +W  ++  Y+      ++F ++ Q+ + +   P  +    V+ A  
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHW-TAVIPTPYVLSSVLSACT 155

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           +   F  G+ IH  V K +F  + F+ N+LI  Y   G   +A  VF  +   D V++N+
Sbjct: 156 KGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNT 215

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKP-------------------------------- 238
           +ISG  Q G  E A++++ EM++  ++P                                
Sbjct: 216 LISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 239 ---DEVTMVAVLSACAKKRDLE-----------------------FGRWPNEALS--IFH 270
              D +T  ++L    K  D+E                       +G+  + A S  IF 
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFG 335

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++Q +  ++P++FT+  +L  C   G +++G QIH+   K G + + Y++  LIDMY+K 
Sbjct: 336 QMQ-ATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
             LDKA ++   ++ RDV  W++MIAG+  +    EAL  F  MQ+  V P+ +   +  
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            AC+    + +G     ++  V G    +  +  +V++  R G  +EA     ++
Sbjct: 455 SACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEAFSLFREI 508



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IH   +      D  I N LI  YA  G +  A  VF  +  +D VSW +M+SG+ Q G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----------------PNE 264
            ++A  LY +M    V P    + +VLSAC K +    GR                  N 
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 265 ALSI---FHELQLSKNV-----NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            +++   F   +L++ V       D  TF +++S  AQ G  +  +QI  +M+  G++ +
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 317 C----------------------------------YLTT-SLIDMYTKCGNLDKALEVFH 341
           C                                  Y+T  SL+D+Y KCG+++ A ++F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
                +V +W+ M+  +       ++ ++F +MQ   + PN  T+  +L  C+ +G ++ 
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPIVPGASVWGALL 458
           G    + +    G    +     ++DM  +   LD+A   +E +EK  +V     W +++
Sbjct: 365 GEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS----WTSMI 419

Query: 459 GACKIHENVE--LAEYACSHLLELEPENHG 486
                H+  E  LA +       + P+N G
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIG 449



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%)

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
           ++IHA    +G+  +  +   LID+Y K G + +A +VF  + SRD   W  M++G+A  
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           G G+EA  L+S+M    V P     ++VL AC+   L  +GRM   Q+
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 365/616 (59%), Gaps = 47/616 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +  +  Q  +I     IH  +++ GL FD + ++ L    A   F +LE AR+ F Q+  
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA--KFGNLEDARKAFQQMFI 379

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WN++I AY  + +P+ +   F+++  N  + P+  T   +    A+    +  ++
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG-FQPDLLTLVSLASIVAQSRDCKNSRS 438

Query: 161 IHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +HG +++  +  +D+ I N+++  YA  G L  A+ VF +I  KDV+SWN++I+G+ Q G
Sbjct: 439 VHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNG 498

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +AIE                                         ++  ++  K + 
Sbjct: 499 LASEAIE-----------------------------------------VYKMMEECKEII 517

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P++ T+VS+L A A +GA+  G++IH ++ K  + L+ ++ T LID+Y KCG L  A+ +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ V       W+ +I+   ++G   + L LF  M +  VKP+ VTF ++L ACSHSG V
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+  F  M+  YG+ P +KHY CMVD+LGRAG L+ A  FI+ MP+ P AS+WGALLG
Sbjct: 638 EEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLG 696

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH N+EL ++A   L E++ +N G  VLLSNIYA  GKW+ V ++R   R  GLKK 
Sbjct: 697 ACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 756

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S+IEVN ++  F  G  SHP CKEIY +L  + A++KS GY+P+ S +LQ V EED 
Sbjct: 757 PGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDV-EEDE 815

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSERLAIA+G+IS  P  PIRI KNLRVCGDCH   K IS++  REI++RD  
Sbjct: 816 KEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSN 875

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC DYW
Sbjct: 876 RFHHFKDGICSCGDYW 891



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 242/515 (46%), Gaps = 76/515 (14%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H  ++  G     + +++L    A      +  +R  FDQIPQ ++YTWN++I AY 
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYA--NLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    ++   F QL+  S   P+ +TFP V+KA   LV    G+ IH    K  F+ ++
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNV 250

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F++ SLIH Y+  G   +A  +F  +  +D+ SWN+MISG +Q G   +A+++  EM +E
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 235 NVKPDEVTMVAVLSACAK---------------KRDLEFGRWPNEAL------------- 266
            +K + VT+V++L  C +               K  LEF  + + AL             
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 267 --------------------------------SIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                             F ++QL+    PD  T VS+ S  AQ
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLN-GFQPDLLTLVSLASIVAQ 429

Query: 295 LGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                    +H  + ++G  + +  +  +++DMY K G LD A +VF  +  +DV  W+T
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 354 MIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +I G+A  G   EA++++  M+E K + PN  T+ ++L A +H G + +G     ++   
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
             +   V   TC++D+ G+ G L +A+    ++P    +  W A++    IH + E    
Sbjct: 550 -NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLK 607

Query: 473 ACSHLLE--LEPENHGALVLLS----NIYAKTGKW 501
               +L+  ++P++   + LLS    + + + GKW
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/620 (40%), Positives = 363/620 (58%), Gaps = 19/620 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + S++  C    Q+KQ+H  ++R GL    Y  +KL             Y   +F Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN + W  +IR Y+      +S   + ++  +    P  FTF  + KA    +   +G+ 
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGKQ 163

Query: 161 IHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +H   I    F  DL++ NS+I  Y  CG L  A  VF  + ++DVVSW  +I  + + G
Sbjct: 164 VHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG 223

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E A  L+ ++ ++    D V   A+++  A+      GR P EAL  F ++Q    + 
Sbjct: 224 DMESASGLFDDLPLK----DMVAWTAMVTGYAQN-----GR-PKEALEYFQKMQ-DVGME 272

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLIDMYTKCGNLDKAL 337
            DE T   V+SACAQLGA+     I    ++ G     N  + ++LIDMY+KCG+ D+A 
Sbjct: 273 TDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAY 332

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +K R+VF +S+MI G+AM+G    AL LF  M + +++PN VTF  +L ACSH+G
Sbjct: 333 KVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAG 392

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV++GR  F +ME  +GV P   HY CMVD+LGRAG L+EA++ ++ MP+ P   VWGAL
Sbjct: 393 LVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGAL 452

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+IH N ++A+ A + L +LEP   G  +LLSNIYA  G+W+ VS+LRK +R  G K
Sbjct: 453 LGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFK 512

Query: 518 KEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN-RSHLLQLVE 575
           K PGCS  E  NGEIH F AG+++HP   EI   L +++ RL+S GY PN  S    L +
Sbjct: 513 KNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTD 572

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E  +E+ L  HSE+LA+AYGL+  E    I+I+KN+R+C DCH V    S++  REI++
Sbjct: 573 DE--KERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIV 630

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G CSC ++W
Sbjct: 631 RDNMRFHHFHNGTCSCGNFW 650


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/634 (39%), Positives = 367/634 (57%), Gaps = 64/634 (10%)

Query: 39  HPVFSLIKQCKNIKQL----------KQIHTQMLRTGLFFDPYS---ASKLFTPCALGTF 85
           HP  + ++ C  + +L          KQ+H + LR      P     A  L    A    
Sbjct: 12  HPAAAALRHCVALLRLHLASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKA 71

Query: 86  SSLEYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
             L YA  +   + P P+ ++ NT++R ++SSA P     + L   + +P  P+  T+P 
Sbjct: 72  PPLRYAVAVLSGLLPSPDPFSLNTVLRIFASSARP--RVALALHRRHLAP--PDTHTYPP 127

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--K 202
           +++A ARL+  R G+ +H    K+     +F+ NSL+H Y  CG    A+ VF  I   +
Sbjct: 128 LLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPE 187

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           +++VSWNS+++GF   G                                          P
Sbjct: 188 RNLVSWNSVLNGFAANG-----------------------------------------RP 206

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           NE L++F E+ L     PD FT VSVL+ACA++G + +G ++H  + K G+  N +   +
Sbjct: 207 NEVLTVFREM-LEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNA 265

Query: 323 LIDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           LID+Y KCG +D A ++F  +   R V  W+++I G A+ G G +AL LFS M+  K+ P
Sbjct: 266 LIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMP 325

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
             +T   VL ACSH GLVD+G  +F+QM+  YG+ P ++H  CMVD+LGRAG ++EA  +
Sbjct: 326 TEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNY 385

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I  MP+ P A VW  LLGAC +H+ +E+ E A + L+EL+P + G  VLLSN+YA  G+W
Sbjct: 386 ITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRW 445

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            +V  LRK M   G++K PG S +E+   +++F+ G+ SHP   +IY  L +I  RL+  
Sbjct: 446 ADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQ 505

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY+P+ S++L  +E+E+ +E ALN HSERLAIA+ L+   P  PIRIVKNLRVCGDCH  
Sbjct: 506 GYIPHTSNVLADIEDEE-KESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMA 564

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KLISK+Y+REI++RDR RFHHF+GG CSC DYW
Sbjct: 565 IKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 43/307 (14%)

Query: 37  HPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLF---FDPYSASKLFTPCALGTFSSLEY 90
           H +P   L++ C  +  L+    +H +  + GL    F   S   L+  C L      E 
Sbjct: 123 HTYP--PLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGL-----FES 175

Query: 91  AREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           A  +FD+IP P  NL +WN+++  ++++  P +   +F +++    + P+ FT   V+ A
Sbjct: 176 AHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREML-EVEFAPDGFTVVSVLTA 234

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVS 207
            A +    +G+ +H  V K     +    N+LI  YA CG +  A  +F  +G  + VVS
Sbjct: 235 CAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVS 294

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA------------KKRD 255
           W S+I G    GF   A++L+  ME E + P E+TMV VL AC+             +  
Sbjct: 295 WTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMK 354

Query: 256 LEFGRWPN-EALSIF-------------HELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
            E+G  P  E L                H    +  + P+   + ++L ACA    ++IG
Sbjct: 355 AEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIG 414

Query: 302 VQIHAKM 308
               A++
Sbjct: 415 EAAWARL 421


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/727 (35%), Positives = 403/727 (55%), Gaps = 84/727 (11%)

Query: 3   DN-PPQHMETLSTPVISLPRHP------NPTTLTVNNGHQHHPHPVFSLIKQCKN---IK 52
           DN P + + T ++ +  L RH       N        G Q       SL++ C +   ++
Sbjct: 270 DNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALE 329

Query: 53  QLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           Q K++H +M   G   + Y  +    ++T C      S+E A E+FD +   N+ +W  +
Sbjct: 330 QGKKVHARMKEVGWDTEIYVGTAILSMYTKCG-----SMEDALEVFDLVKGRNVVSWTAM 384

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           I  ++      ++F+ F +++  S   PN  TF  ++ A +     + GQ I   +I++ 
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMI-ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           +  D  +  +L+  YA CG L  A+ VF  I K++VV+WN+MI+ +VQ   ++ A+  ++
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 230 EMEMENVKPDEVT--------------------------------------MVAVLSACA 251
            +  E +KP+  T                                      +V++   C 
Sbjct: 504 ALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCG 563

Query: 252 K------------KRDL-----------EFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
                        KRDL           + G+  N+    + ++     + PD+ TF  +
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK--NQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L+ACA   A+  G ++HA + +     +  + T LI MYTKCG+++ A +VFH +  ++V
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNV 681

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           + W++MI G+A +G G+EAL+LF +MQ+  VKP+ +TF   L AC+H+GL++EG   F  
Sbjct: 682 YSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQS 741

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M+  + + P ++HY CMVD+ GRAGLL+EAVEFI KM + P + VWGALLGAC++H NVE
Sbjct: 742 MKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVE 800

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE A    LEL+P ++G  V+LSNIYA  G W  V+++RK M   G+ K+PG S IEV+
Sbjct: 801 LAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVD 860

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G++H F + + +HP  +EI+++L+ +   ++  GYVP+  ++L  VE+ + +EQAL  HS
Sbjct: 861 GKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNE-KEQALFYHS 919

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           ERLAI YGL+   P  PI I KNLRVCGDCHT  K ISK+  R+I+ RD  RFHHF+ G 
Sbjct: 920 ERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGV 979

Query: 649 CSCMDYW 655
           CSC D+W
Sbjct: 980 CSCGDFW 986



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 222/435 (51%), Gaps = 58/435 (13%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +L++ C   KN+   ++I+  + ++G+  D +  + L   +  C   T S    A+++FD
Sbjct: 115 ALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCG-NTIS----AKQIFD 169

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            + + ++Y+WN L+  Y       ++F +  Q+V +S   P++ TF  ++ A A      
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVK-PDKRTFVSMLNACADARNVD 228

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ ++ +++K+ ++ DLF+  +LI+ +  CGD+  A  VF  +  +D+V+W SMI+G  
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G F++A  L++ ME E                                          
Sbjct: 289 RHGRFKQACNLFQRMEEEG----------------------------------------- 307

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PD+  FVS+L AC    A++ G ++HA+MK+ G     Y+ T+++ MYTKCG+++ A
Sbjct: 308 -VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           LEVF  VK R+V  W+ MIAGFA +G   EA   F++M E+ ++PN VTF ++L ACS  
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 397 GLVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
             +  G+   +  +E  YG    V+  T ++ M  + G L +A    EK+        W 
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWN 483

Query: 456 ALLGACKIHENVELA 470
           A++ A   HE  + A
Sbjct: 484 AMITAYVQHEQYDNA 498


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/600 (40%), Positives = 355/600 (59%), Gaps = 46/600 (7%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH   ++ GL FD +  + L    A   F  L  A  +F+Q+   ++ +WN+L+ A+  +
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYA--KFGELRSAETIFNQMKVRDIVSWNSLLAAFEQN 319

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS-FEDDLF 175
            +P+ +  ++ ++ ++    P+  T   +   AA L  F   ++IHG V +   F  D+ 
Sbjct: 320 KKPVIALGVYNKM-HSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIA 378

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + N++I  YA  G +  A  VF  +  KDV+SWNS+I+G+ Q G                
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGL--------------- 423

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                                      NEA+ ++  ++      P++ T+VS+L+A +QL
Sbjct: 424 --------------------------ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQL 457

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
           GA+  G++ H ++ K  +  + +++T L+DMY KCG L  AL +F+ V  +    W+ +I
Sbjct: 458 GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           +   ++G G +A+ LF  MQ   VKP+ +TF ++L ACSHSGLVDEG+  F  M+  YG+
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
            P +KHY CMVD+ GRAG L++A  F++ MP+ P  SVWGALLGAC+IHENVEL      
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
           HLL++E EN G  VLLSNIYAK G W+ V E+R   R  GLKK PG SSIEV+ +I  F 
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFY 697

Query: 536 AGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
            G  +HP C+EIYS+L  + A++KS GYVP+ + +LQ V E+D +E  L  HSERLA+A+
Sbjct: 698 TGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDV-EDDEKENILTSHSERLAMAF 756

Query: 596 GLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           G+IS  P   ++I KNLRVCGDCH   K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 757 GIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 227/478 (47%), Gaps = 68/478 (14%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           C  +   KQ+H  ++ +G     + ++KL    A      + +AR  FDQI   ++YTWN
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAF--LGDIPHARLTFDQIQTKDVYTWN 110

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           ++I AY+       +   F + +  S    + +TFP VI+A   L     G+ +H +V+K
Sbjct: 111 SMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLK 167

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
             FE D++I+ S IHFY+  G +++A  +F  +  +D+ +WN+MISGF   G   +A+E+
Sbjct: 168 LGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEV 227

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRD---------------LEFGRWPNEAL------ 266
           + EM  ++V  D VT+ ++L  C +  D               LEF  +   AL      
Sbjct: 228 FDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAK 287

Query: 267 --------SIFHELQL------------------------------SKNVNPDEFTFVSV 288
                   +IF+++++                              S  V PD  T VS+
Sbjct: 288 FGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSL 347

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
            S  A+LG       IH  + ++   L +  L  ++IDMY K G +D A +VF  +  +D
Sbjct: 348 ASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKD 407

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           V  W+++I G++  G   EA+D++S M+  +   PN  T+ ++L A S  G + +G    
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAH 467

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            Q+   + +   +   TC+VDM G+ G L +A+    ++P     S W A++    +H
Sbjct: 468 GQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLH 523



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 121/297 (40%), Gaps = 55/297 (18%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           Q   +KQ  + H Q+++  L+FD + ++ L      G    L  A  +F ++P  +  +W
Sbjct: 456 QLGALKQGMKAHGQLIKNFLYFDIFVSTCLVD--MYGKCGKLADALSLFYEVPHQSSVSW 513

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N +I  +      +++  +F ++  +    P+  TF  ++ A +       GQ    ++ 
Sbjct: 514 NAIISCHGLHGYGLKAVKLFKEM-QSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLM- 571

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
               ++   I  SL H+                           M+  F + G  EKA  
Sbjct: 572 ----QETYGIRPSLKHY-------------------------GCMVDLFGRAGHLEKAFN 602

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL-SKNVNPDEFTF 285
             + M    V+PD     A+L AC    ++E  R  ++     H L++ S+NV      +
Sbjct: 603 FVKNMP---VRPDVSVWGALLGACRIHENVELVRTVSD-----HLLKVESENVG----YY 650

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           V + +  A+LG  +   ++ +  + +G+K     ++           +DK ++VF+T
Sbjct: 651 VLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSI---------EVDKKIDVFYT 698


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/624 (39%), Positives = 375/624 (60%), Gaps = 64/624 (10%)

Query: 44  LIKQCKNIK-QLKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSS---------LEYA 91
           L++ C + K +L+ IH   +R G+  +     K  +FT  +L    S         L YA
Sbjct: 24  LLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKHLIFTIVSLSAPMSYAYNVFTWVLSYA 83

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
             +F  I  PN++TWNT+ R Y+ S  P  +   + Q++  S   P+  T+PF++KA ++
Sbjct: 84  YNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIV-SRIEPDTHTYPFLLKAISK 142

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            +  R G+AIH + I++ FE  +F+ NSL+H YA CGD   A+ VF ++  +D+V+  S+
Sbjct: 143 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISV 202

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+GF   G                                          P+EAL++F E
Sbjct: 203 INGFALNGR-----------------------------------------PSEALTLFRE 221

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +  ++ V PD FT VS+LSA A+LGA+++G ++H  + K G++ N ++T SL+D+Y KC 
Sbjct: 222 MS-AEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKC- 279

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
             D   E       R+   W+++I G A+ G G EAL+LF  M+   + P+ +TF  VL 
Sbjct: 280 --DAIWE-----XERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLY 332

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH G++DEG  +F +M+  +G++P ++HY CMVD+L RAGL+ +A E+I+ MP+ P A
Sbjct: 333 ACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNA 392

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
             W  LLGAC IH ++ L E A SHLL+LEP++ G  VLLSN+Y    +W +V  +R+ M
Sbjct: 393 VTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSM 452

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
              G+KK  G S +E+   +++F  G  SHP  +++Y+ L++I   LK  GYVP+ +++L
Sbjct: 453 LKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVL 512

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +EEE+ +EQAL+ HSE+ AIA+  ++  P   IR++KNLRVC DCH   KL++K+Y+R
Sbjct: 513 ADIEEEE-KEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDR 571

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RDR RFHHFRGG+CSC DYW
Sbjct: 572 EIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 371/619 (59%), Gaps = 17/619 (2%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           PVF  +     +K   Q+H  ML  GL       SK+    A  +   ++ +  +F+ I 
Sbjct: 75  PVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYA--SSGDIDSSVSVFNGIG 132

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           +P+   +N++IRAY+      ++   +  + ++  +  + FTFPFV+K++  L+   +G+
Sbjct: 133 EPSSLLFNSMIRAYARYGFAERTVATYFSM-HSWGFTGDYFTFPFVLKSSVELLSVWMGK 191

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG++++   + DL+++ SLI  Y  CG++  A  VF  +  +DV SWN++++G+ + G
Sbjct: 192 CVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG 251

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-QLSKNV 278
             + A+ ++  M   N+     TM++  S     +         +ALS+F E+ +    V
Sbjct: 252 CIDAALAIFERMPWRNIV-SWTTMISGYSQSGLAQ---------QALSLFDEMVKEDSGV 301

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P+  T +SVL ACAQL  ++ G QIH    + G+  N  +  +L  MY KCG+L  A  
Sbjct: 302 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 361

Query: 339 VFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            F  +    +++  W+TMI  +A YG G +A+  F  M +A ++P+ +TFT +L  CSHS
Sbjct: 362 CFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 421

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLVD G  +FN M   Y + P V+HY C+ D+LGRAG L EA + + +MP+  G S+WG+
Sbjct: 422 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGS 481

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC+ H N+E+AE A   L  LEPEN G  VLLSN+YA+ G+W  V +LR  ++  G 
Sbjct: 482 LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGT 541

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PGCS IE+NG+ H FL G++SHP  KEIY  L+ +  ++K+ GY P+ S++L  + E
Sbjct: 542 KKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISE 601

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +E  L  HSE+LA+A+G+++      +R+ KNLR+CGDCHT    IS++Y RE+++R
Sbjct: 602 EE-KEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVR 660

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+GG CSC DYW
Sbjct: 661 DINRFHHFKGGCCSCGDYW 679



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 166/406 (40%), Gaps = 83/406 (20%)

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D +P P+   +   I   + SA  +Q+ +  L    ++P  P   ++  V +    L   
Sbjct: 32  DTVPPPSSPPFKCSISPLTISAT-LQNLLQPL----SAPGPPPILSYAPVFQFLTGLNML 86

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           ++G  +H  ++    +    + + ++ FYA  GD+  +  VF  IG+   + +NSMI  +
Sbjct: 87  KLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAY 146

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            + GF E+ +  Y  M                                           S
Sbjct: 147 ARYGFAERTVATYFSMH------------------------------------------S 164

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                D FTF  VL +  +L ++ +G  +H  + + G++ + Y+ TSLI +Y KCG ++ 
Sbjct: 165 WGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIND 224

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  +  RDV  W+ ++AG+   GC   AL +F RM       N V++T ++   S 
Sbjct: 225 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR----NIVSWTTMISGYSQ 280

Query: 396 SGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           SGL  +    F++M +   GV P                       ++  M ++P  +  
Sbjct: 281 SGLAQQALSLFDEMVKEDSGVRP----------------------NWVTIMSVLPACAQL 318

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
             L    +IH      E AC   L     N   L+ L+ +YAK G 
Sbjct: 319 STLERGRQIH------ELACRMGLN---SNASVLIALTAMYAKCGS 355


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/614 (40%), Positives = 363/614 (59%), Gaps = 55/614 (8%)

Query: 50  NIKQLKQIHTQMLRTG---LFFDPYSASKLFTPCAL-GTFSSLEYAREMFD-QIPQPNLY 104
           ++   KQIH + LR     L     +   LF   +L      L YA  +    +P P+ +
Sbjct: 30  SVAAAKQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDPF 89

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           + NT++R  +SSA P     I L L       P+  T+P +++A  RL+  R G+++H  
Sbjct: 90  SLNTVLRIAASSAHP----RIALALHRRRLAPPDTHTYPPLLQACTRLLALREGESLHAE 145

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFE 222
             K+     +F+ NSL+H Y  CG    A+ VF  + + ++++VSWNS+++GF   G   
Sbjct: 146 AAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGR-- 203

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                                                  PNE L+IF E  L  ++ PD 
Sbjct: 204 ---------------------------------------PNEVLTIFRE-TLEADLMPDG 223

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           FT VSVL+ACA++GA+ +G ++H    K G+  N ++  +LID+Y KCG ++ A +VF  
Sbjct: 224 FTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEE 283

Query: 343 VK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           +  +R V  W+++I G A  G G++AL+LF  M+  ++ P  +T   VL ACSH GLVD+
Sbjct: 284 MGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDD 343

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G  +FN+M+  YG+ PG++H  CMVD+LGRAG ++EA  +I  MP+ P A VW  LLGAC
Sbjct: 344 GFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGAC 403

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
            +H+ +EL E A + L+EL+P + G  VLLSN+YA  G+W +   LRK M   G++K PG
Sbjct: 404 AMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPG 463

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S +E+   +++F+ G+ SHP   +IY  L EI  RL+  GYVP  S++L  +EEE+ +E
Sbjct: 464 HSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEE-KE 522

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            ALN HSERLAIA+ L+   P  PIRIVKNLR+CGDCH V KLISK+Y+REI++RDR RF
Sbjct: 523 TALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRF 582

Query: 642 HHFRGGNCSCMDYW 655
           HHF+GG CSC DYW
Sbjct: 583 HHFKGGECSCKDYW 596



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 43/307 (14%)

Query: 37  HPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEY 90
           H +P   L++ C  +  L++   +H +  + GL    +  + L   +  C L      E 
Sbjct: 121 HTYP--PLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGL-----FES 173

Query: 91  AREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           A  +FD+IP  + NL +WN+++  ++++  P +   IF + +  +   P+ FT   V+ A
Sbjct: 174 AHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETL-EADLMPDGFTIVSVLTA 232

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVS 207
            A +    +G+ +H    K     +  + N+LI  YA CG +  A+ VF  +G  + VVS
Sbjct: 233 CAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVS 292

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG-RWPNEAL 266
           W S+I G    GF + A+EL+  ME E + P ++TMV VL AC+    ++ G R+ NE  
Sbjct: 293 WTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQ 352

Query: 267 SIF-------------------------HELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
             +                         H    +  V P+   + ++L ACA    +++G
Sbjct: 353 DKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELG 412

Query: 302 VQIHAKM 308
               A++
Sbjct: 413 EAAWARL 419


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 363/621 (58%), Gaps = 73/621 (11%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           H  P++ L   C  + +LKQ H+Q++R GL  D  +  ++   CA+     L +      
Sbjct: 20  HKLPLYGL-DSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRW------ 72

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           Q+ +  ++ ++ ++    S                     PN+FT+P +I+A        
Sbjct: 73  QLARNCIFMYSRMLHKSVS---------------------PNKFTYPPLIRACCIDYAIE 111

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--VVSWNSMISG 214
            G+ IH  V+K  F  D F  N+LIH Y     L  A  VF  + ++D   VSWN+MI+ 
Sbjct: 112 EGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAA 171

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +VQ                                             +EA ++F  ++L
Sbjct: 172 YVQSNRL-----------------------------------------HEAFALFDRMRL 190

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            +NV  D+F   S+LSAC  LGA++ G  IH  ++K GI+L+  L T++IDMY KCG L+
Sbjct: 191 -ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLE 249

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           KA EVF+ +  + +  W+ MI G AM+G G  A++LF  M+   V P+ +TF NVL AC+
Sbjct: 250 KASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACA 309

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           HSGLV+EG+ +F  M  V G+ PG++H+ CMVD+LGRAGLL+EA + I +MP+ P A V 
Sbjct: 310 HSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVL 369

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GAL+GAC+IH N EL E     ++ELEP N G  VLL+N+YA  G+W++V+++RK M   
Sbjct: 370 GALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDR 429

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KK PG S IE    + +F+AG  +HP  KEIY+KLDEI+  ++S GYVP+   +L  +
Sbjct: 430 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDI 489

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E  L  HSE+LAIA+GL+  +P + +RI KNLR+C DCH  +KLISK+Y+REI+
Sbjct: 490 DEEE-KENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREII 548

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RDR RFHHFR G CSC DYW
Sbjct: 549 IRDRNRFHHFRMGGCSCKDYW 569


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 373/608 (61%), Gaps = 23/608 (3%)

Query: 25  PTTLTVNNGHQHHPHPVFS------LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           P   + N    HH  P  S      L++   +  +L+Q+H Q+++T         +++  
Sbjct: 9   PIPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGL 68

Query: 79  PCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
            CA     S  YA+++F+ + +  P  + WN+ ++A +    PI + M+F +L       
Sbjct: 69  VCAFT--PSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRL-RQYDVC 125

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT   V++A   L+    G+ +HG+V K  F  +L++ N ++H YA CG++  A  +
Sbjct: 126 PDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + ++DVV+WN MI+  ++ G  E A +L+  M   NV+    +M+A    C K +  
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR-SWTSMIAGYVQCGKAK-- 242

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EA+ +F +++    V  +E T V+VL+ACA LGA+D+G++IH    + G K N
Sbjct: 243 -------EAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRN 294

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             ++ +LIDMY KCG L++A +VF  ++ R V  WS MI G AM+G   EAL LFS M +
Sbjct: 295 VRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQ 354

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             ++PN VTF  +L ACSH GL+ EGR FF  M   YG++P ++HY CMVD+L RAGLL 
Sbjct: 355 VGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLH 414

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA EFI  MP+ P   VWGALLGAC++H+NVE+AE A  HLLEL+P N G  V+LSNIYA
Sbjct: 415 EAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYA 474

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           + G+W++ + +RK M+   +KK PG SSI V+G +H+F+AGE SHP  ++I+ + +E++ 
Sbjct: 475 EAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLE 534

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            ++  GYVPN S +L  +EE + + + ++ HSE+LA+ +GL++     PIRI+KNLR+C 
Sbjct: 535 EMRLKGYVPNTSVVLLDIEEGE-KVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICE 593

Query: 617 DCHTVAKL 624
           DCH+  ++
Sbjct: 594 DCHSAFQI 601


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/651 (39%), Positives = 370/651 (56%), Gaps = 58/651 (8%)

Query: 14  TPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL--FFDPY 71
           TP + L +     TL       H    + SL+++C  +  L+  H  + R  L      +
Sbjct: 47  TPRMQLLKPKEAATLPREALEAH----IVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAF 102

Query: 72  SASKLFTPCALGTFSSLEYA------REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           + SKL   C      +   A      R +FDQIP P  + +N+LIRA  ++     +  +
Sbjct: 103 ALSKLLASCVSAPAPAAAQAAASSYARNLFDQIPDPTAFCYNSLIRALPAAGSA-PALAV 161

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           + +++      PN FT  F +KA A +     G+ +H   ++       ++   L++ YA
Sbjct: 162 YRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYA 221

Query: 186 ICGDLAMAYCVF-VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
            C  +A+A  VF  M G K++V+W++M+SG+ + G                         
Sbjct: 222 KCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMV----------------------- 258

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
                             NEAL +F E+Q +  V PDE T VSV+SACA+ GA+D+G  +
Sbjct: 259 ------------------NEALGLFREMQ-AVGVEPDEVTMVSVISACAKAGALDLGKWV 299

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           HA + ++GI ++  L+T+LIDMY KCG +++A  VF  +  +D   WS MI GFA++G  
Sbjct: 300 HAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLV 359

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            +AL LFSRM E KV+PN VTF  VL AC+HSGLV++GR +++ M+ + G+ P +++Y C
Sbjct: 360 EDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGC 418

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           MVD+L R+GLLD+A  F+  MP+ P + +W  LL ACK    +++AE A   LLELEP N
Sbjct: 419 MVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHN 478

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
               VLLSN+YA   +WD VS LR+ M+   +    G SSIE+NG +H+F+  + SHP  
Sbjct: 479 PENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEI 538

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           +EI   L E+  R++  G+ P  + +L  V EE+ +E AL  HSERLAIAYGL+      
Sbjct: 539 REIRLVLREMADRVRRAGHKPWTAAVLHDVGEEE-KEAALCQHSERLAIAYGLLKTRAPH 597

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IR+VKNLR C DCH VAK+ISK YNREI++RDR RFH F GG+CSC D+W
Sbjct: 598 VIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/647 (39%), Positives = 391/647 (60%), Gaps = 21/647 (3%)

Query: 13  STPVI--SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           S+P++  SLP++   TT T        P  +  LI + +++ ++ QIH  +LR  L   P
Sbjct: 3   SSPLLATSLPQNQLSTTATARF-RLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHP 61

Query: 71  -YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
            Y    L    A  +   + ++  +F Q   P+L+ +   I   S +    Q+F++++QL
Sbjct: 62  RYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 121

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + +S   PNEFTF  ++K+ +     + G+ IH  V+K     D +++  L+  YA  GD
Sbjct: 122 L-SSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  VF  + ++ +VS  +MI+ + + G  E A  L+  M     + D V+   ++  
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM----CERDIVSWNVMIDG 232

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
            A+        +PN+AL +F +L       PDE T V+ LSAC+Q+GA++ G  IH  +K
Sbjct: 233 YAQHG------FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
              I+LN  + T LIDMY+KCG+L++A+ VF+    +D+  W+ MIAG+AM+G  ++AL 
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346

Query: 370 LFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           LF+ MQ    ++P  +TF   L AC+H+GLV+EG   F  M   YG+ P ++HY C+V +
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
           LGRAG L  A E I+ M +   + +W ++LG+CK+H +  L +    +L+ L  +N G  
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLSNIYA  G ++ V+++R  M+  G+ KEPG S+IE+  ++H+F AG+  H   KEIY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
           + L +I  R+KS GYVPN + +LQ +EE + +EQ+L +HSERLAIAYGLIS +P  P++I
Sbjct: 527 TMLRKISERIKSHGYVPNTNTVLQDLEETE-KEQSLQVHSERLAIAYGLISTKPGSPLKI 585

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLRVC DCHTV KLISK+  R+I++RDR RFHHF  G+CSC D+W
Sbjct: 586 FKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/620 (40%), Positives = 362/620 (58%), Gaps = 19/620 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + S++  C    Q+KQ+H  ++R GL    Y  +KL             Y   +F Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN + W  +IR Y+      +S   + ++  +    P  FTF  + KA    +   +G+ 
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG-VGPVSFTFSALFKACGAALNMDLGKQ 163

Query: 161 IHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +H   I    F  DL++ NS+I  Y  CG L  A  VF  + ++DVVSW  +I  + + G
Sbjct: 164 VHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYG 223

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E A  L+ ++  +    D V   A+++  A+      GR P EAL  F ++Q    + 
Sbjct: 224 DMESASGLFDDLPSK----DMVAWTAMVTGYAQN-----GR-PKEALEYFQKMQ-DVGME 272

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLIDMYTKCGNLDKAL 337
            DE T   V+SACAQLGA+     I    ++ G     N  + ++LIDMY+KCG+ D+A 
Sbjct: 273 TDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAY 332

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +K R+VF +S+MI G+AM+G    AL LF  M + +++PN VTF  +L ACSH+G
Sbjct: 333 KVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAG 392

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV++GR  F +ME  +GV P   HY CMVD+LGRAG L+EA++ ++ MP+ P   VWGAL
Sbjct: 393 LVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGAL 452

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+IH N ++A+ A + L +LEP   G  +LLSNIYA  G+W+ VS+LRK +R  G K
Sbjct: 453 LGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFK 512

Query: 518 KEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN-RSHLLQLVE 575
           K PGCS  E  NGEIH F AG+++HP   EI   L +++ RL+S GY PN  S    L +
Sbjct: 513 KNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTD 572

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E  +E+ L  HSE+LA+AYGL+  E    I+I+KN+R+C DCH V    S++  REI++
Sbjct: 573 DE--KERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIV 630

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G CSC ++W
Sbjct: 631 RDNMRFHHFHNGTCSCGNFW 650


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/646 (39%), Positives = 368/646 (56%), Gaps = 78/646 (12%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C  +K  K   QIH  +L+ G   D Y  + L                        
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 77  ---FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +E AR MFD+IP  ++ +WN +I  Y  +    ++  +F +++ 
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM- 187

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   VI A+AR     +G+ +H  +    F  +L I N+LI FY+ CG++ 
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEME 247

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F+ +  KDV+SWN +I G+         + LY+E                     
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTH-------LNLYKE--------------------- 279

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L    +P++ T +S+L ACA LGA+DIG  IH  + K 
Sbjct: 280 -------------ALLLFQEM-LRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKR 325

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+     L TSLIDMY+KCG+++ A +VF+++  + +  W+ MI GFAM+G    A D
Sbjct: 326 LKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFD 385

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++ ++KP+ +TF  +L ACSH+G++D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 386 IFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLL 445

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACK+H NVEL E    +L ++EP N G+ V
Sbjct: 446 GHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYV 505

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V+ +R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 506 LLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 565

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 566 MLEEMEVLLQEAGFVPDTSEVLQEMEEE-FKEGALRHHSEKLAIAFGLISTKPETKLTIV 624

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 625 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 222/411 (54%), Gaps = 16/411 (3%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L YA  +F+ I +PNL  WNT+ R ++ S +P+ +  +++ ++ +    PN +TFPF
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMI-SLGLLPNSYTFPF 68

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++K+ A+L   + G  IHG V+K  +E DL++  SLI  Y     L  A+ VF     +D
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVS+ ++++G+   G+ E A  ++ E+ +++V    V+  A++S       +E G +  E
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDV----VSWNAMISGY-----VETGNY-KE 178

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F E+ +  NV PDE T V+V+SA A+ G++++G Q+H+ +   G   N  +  +LI
Sbjct: 179 ALELFKEM-MKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALI 237

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           D Y+KCG ++ A  +F  +  +DV  W+ +I G+      +EAL LF  M  +   PN V
Sbjct: 238 DFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDV 297

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           T  ++L AC+H G +D GR     ++  + GV       T ++DM  + G ++ A +   
Sbjct: 298 TMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFN 357

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLL--ELEPENHGALVLLS 492
            M +      W A++    +H     A    S +   E++P++   + LLS
Sbjct: 358 SM-LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/657 (40%), Positives = 369/657 (56%), Gaps = 61/657 (9%)

Query: 3   DNPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHT 59
           DN   H++ +  P  S P H   T LT    +        SL++ C   K IK  KQ+H 
Sbjct: 49  DNNQTHLKAI--PSCSNP-HAESTCLTPTYSN------YASLLQSCIARKAIKPGKQLHA 99

Query: 60  QMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE 118
           Q+   G  FD   A+KL    C   + SS   AR +FD+IP+ N++ WN LIR Y+ +  
Sbjct: 100 QVCLAGFGFDTVIATKLVNLYCVCDSLSS---ARLLFDRIPKHNIFLWNVLIRGYAWNGP 156

Query: 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISN 178
              +  ++ Q+ ++    P+ FTFPFV+KA A L     G+ IH  V+++ +E D+F+  
Sbjct: 157 YEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGA 215

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
           +LI  YA CG +  A  VF  I  +D V WNSM++ + Q G                   
Sbjct: 216 ALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH------------------ 257

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
                                  P+  LS+  E+ L+  + P E T V+ +SA A   A+
Sbjct: 258 -----------------------PDACLSLCSEMVLT-GLRPTEATLVTAISASADNAAL 293

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
             G ++H    +Q  + +  + T+L+DMY KCG++  A  +F  +  + V  W+ MI G+
Sbjct: 294 PQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGY 353

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           AM+G   EALDLF  M     KP+ +TF  VL ACSH GL++EG MFF  M   Y + P 
Sbjct: 354 AMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPT 412

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           V+HYTCMVD+LG +G LDEA   I +M ++P + VWGALL +CKIH NVEL E A   L+
Sbjct: 413 VQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI 472

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           ELEP++ G  V+LSNIYA+ GKW+ V++LRK M    LKK   CS IEV  ++H FL+G+
Sbjct: 473 ELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGD 532

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
           +SHPL  EIYS+L+ +   +K  GY P+   +   V E+D +   +  HSERLAIA+GLI
Sbjct: 533 TSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDV-EDDEKANMVCSHSERLAIAFGLI 591

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S  P   + I KNLR+C DCH   K ISK+  REI +RD  R+HHF+ G CSC DYW
Sbjct: 592 STPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/670 (37%), Positives = 378/670 (56%), Gaps = 74/670 (11%)

Query: 50  NIKQLKQIHTQMLRTGL---FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           ++++ ++IH  ++  G     F   +   L+  C       +E A +MF+++PQ +L +W
Sbjct: 157 DLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKC-----RQIEDAYKMFERMPQRDLVSW 211

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           NT++  Y+ +    ++  + LQ+   +   P+  T   V+ A A L   R+G++IHG   
Sbjct: 212 NTVVAGYAQNGFARRAVQVVLQM-QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAF 270

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ FE  + ++ +++  Y  CG +  A  VF  +  ++VVSWN+MI G+ Q G  E+A  
Sbjct: 271 RAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFA 330

Query: 227 LYREMEMENVKPDEV--------------------------------------TMVAVLS 248
            + +M  E V+P  V                                      +++++ S
Sbjct: 331 TFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYS 390

Query: 249 ACAKKRDLE---FGR--------WP------------NEALSIFHELQLSKNVNPDEFTF 285
            C K+ D+    FG         W             NEAL++F E+Q S ++ PD FT 
Sbjct: 391 KC-KRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQ-SHDIKPDSFTL 448

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           VSV++A A L        IH    +  +  N ++ T+LID + KCG +  A ++F  ++ 
Sbjct: 449 VSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQE 508

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           R V  W+ MI G+   G GREALDLF+ MQ   VKPN +TF +V+ ACSHSGLV+EG  +
Sbjct: 509 RHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYY 568

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F  M+  YG+ P + HY  MVD+LGRAG LD+A +FI+ MP+ PG +V GA+LGAC+IH+
Sbjct: 569 FESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHK 628

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           NVEL E     L +L+P++ G  VLL+N+YA    WD V+ +R  M   G++K PGCS +
Sbjct: 629 NVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLV 688

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           E+  E+H F +G ++HP  K IY+ L+ +   +K+ GYVP+ + +  +  EEDV+EQ L+
Sbjct: 689 ELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSIHDV--EEDVKEQLLS 746

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSERLAIA+GL++      I I KNLRVCGDCH   K IS +  REI++RD  RFHHF+
Sbjct: 747 SHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFK 806

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 807 NGICSCGDYW 816



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 182/367 (49%), Gaps = 45/367 (12%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + HP   L++ C ++K+L QI   +++ G + +    +KL +      F+S+  A  +F+
Sbjct: 43  YRHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLIS--LFCKFNSITEAARVFE 100

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +       ++T+++ Y+ ++  ++  + F + +      P  + F ++++ +   +  R
Sbjct: 101 PVEHKLDVLYHTMLKGYAKNS-TLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLR 159

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHGMVI + F+ +LF   ++++ YA C  +  AY +F  + ++D+VSWN++++G+ 
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYA 219

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q GF  +A+++  +M+    KPD +T+V+VL A A  + L  GR                
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGR---------------- 263

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                      IH    + G +    + T+++D Y KCG++  A
Sbjct: 264 --------------------------SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSA 297

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  + SR+V  W+TMI G+A  G   EA   F +M +  V+P  V+    L AC++ 
Sbjct: 298 RLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANL 357

Query: 397 GLVDEGR 403
           G ++ GR
Sbjct: 358 GDLERGR 364



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           QI   + K G        T LI ++ K  ++ +A  VF  V+ +   ++ TM+ G+A   
Sbjct: 62  QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNS 121

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
             R+A+  + RM+  +V P    FT +L     +  +  GR   + M    G    +   
Sbjct: 122 TLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQSNLFAM 180

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMP 446
           T +V++  +   +++A +  E+MP
Sbjct: 181 TAVVNLYAKCRQIEDAYKMFERMP 204


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/558 (41%), Positives = 352/558 (63%), Gaps = 12/558 (2%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + N+++WN++I   + S + +++   F  +   S   PN  TFP  IK+ + L+    
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLK-PNRSTFPCAIKSCSALLDLHS 94

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+  H   +   FE DLF+S++L+  Y+ CG+L  A  +F  I  +++VSW SMI+G+VQ
Sbjct: 95  GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                +A+ ++  M     + D ++  ++++  A+           E++ IFH +     
Sbjct: 155 NDDAHRALRVFDGM----AERDVISWNSIIAVYAQNG------MSTESMEIFHRMVKDGE 204

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           +N +  T  +VL ACA  G+  +G  IH ++ K G++ N ++ TS+IDMY KCG ++ A 
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 264

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           + F  ++ ++V  WS M+AG+ M+G  +EAL++F  M  A VKPN +TF +VL ACSH+G
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           L++EG  +F  M   + V PGV+HY CMVD+LGRAG L EA + I+ M + P   VWGAL
Sbjct: 325 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 384

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC++H+NV+L E +   L EL+P+N G  VLLSNIYA  G+W++V  +R  M+ SGL 
Sbjct: 385 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 444

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S +++ G +H FL G+  HP  ++IY  L+++  +L+  GYVP+ + +L  V  E
Sbjct: 445 KPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHE 504

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E  L +HSE+LA+A+G+++  P   I I+KNLRVCGDCHT  K ISK+ +REI++RD
Sbjct: 505 E-KEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRD 563

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHFR G CSC DYW
Sbjct: 564 SKRFHHFRDGLCSCGDYW 581



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 31/272 (11%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A  +FD + + ++ +WN++I  Y+ +    +S  IF ++V +     N  T   V+ A A
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                R+G+ IH  VIK   E ++F+  S+I  Y  CG + MA   F  + +K+V SW++
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M++G+   G  ++A+E++ EM M  VKP+ +T V+VL+AC+    LE G    +A+S  H
Sbjct: 281 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS--H 338

Query: 271 ELQLSKNV----------------------------NPDEFTFVSVLSACAQLGAMDIGV 302
           E  +   V                             PD   + ++L AC     +D+G 
Sbjct: 339 EFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG- 397

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +I A+   +    NC     L ++Y   G  +
Sbjct: 398 EISARKLFELDPKNCGYYVLLSNIYADAGRWE 429


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/624 (39%), Positives = 362/624 (58%), Gaps = 54/624 (8%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGL--FFDPYSASKLFTPCALGTFSSLEYA------R 92
           + SL+++C  +  L+  H  + R  L      ++ SKL   C      +   A      R
Sbjct: 21  IVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYAR 80

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +FDQIP P  + +N+LIRA  ++     +  ++ +++      PN FT  F +KA A +
Sbjct: 81  NLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWNSM 211
                G+ +H   ++       ++   L++ YA C  +A+A  VF  M G K++V+W++M
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 199

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           +SG+ + G                                           NEAL +F E
Sbjct: 200 VSGYSRVGMV-----------------------------------------NEALGLFRE 218

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +Q +  V PDE T VSV+SACA+ GA+D+G  +HA + ++GI ++  L+T+LIDMY KCG
Sbjct: 219 MQ-AVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCG 277

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            +++A  VF  +  +D   WS MI GFA++G   +AL LFSRM E KV+PN VTF  VL 
Sbjct: 278 LIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 337

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           AC+HSGLV++GR +++ M+ + G+ P +++Y CMVD+L R+GLLD+A  F+  MP+ P +
Sbjct: 338 ACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNS 396

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            +W  LL ACK    +++AE A   LLELEP N    VLLSN+YA   +WD VS LR+ M
Sbjct: 397 VIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKM 456

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           +   +    G SSIE+NG +H+F+  + SHP  +EI   L E+  R++  G+ P  + +L
Sbjct: 457 KGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVL 516

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V EE+ +E AL  HSERLAIAYGL+       IR+VKNLR C DCH VAK+ISK YNR
Sbjct: 517 HDVGEEE-KEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNR 575

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RDR RFH F GG+CSC D+W
Sbjct: 576 EIVVRDRVRFHKFMGGSCSCKDFW 599


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/667 (35%), Positives = 382/667 (57%), Gaps = 63/667 (9%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           ++ C   ++  Q+H   ++T     P  +S+L    A    ++L+YA  +FD I +P L 
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WN LI+ Y  +     +  +F +L+ +  + P+ FT P V+K  ARL   + G+ IHG+
Sbjct: 82  SWNLLIKCYIENQRSNDAIALFCKLLCD--FVPDSFTLPCVLKGCARLGALQEGKQIHGL 139

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           V+K  F  D F+ +SL+  Y+ CG++ +   VF  +  KDVVSWNS+I G+ + G  E A
Sbjct: 140 VLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELA 199

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLE-----FGRWP----------------- 262
           +E++ EM     + D  +   ++   +K   LE     F R P                 
Sbjct: 200 LEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKA 255

Query: 263 ----------------------------------NEALSIFHELQLSKNVNPDEFTFVSV 288
                                              +AL +F E+ L ++++P+  T +  
Sbjct: 256 GDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF-EVMLREDISPNYTTILGA 314

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           +SA + + ++  G  +H+ + K G K +  L T LI+MY+KCG++  AL VF ++  + +
Sbjct: 315 VSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKL 374

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+++I G  M+G   + L+LF  M    +KP+A+TF  VL ACSH+G  ++   +F  
Sbjct: 375 GHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKM 434

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M   YG+ P ++HY C++D+L RAG L+EA + IE+MPI     +W +LL   + H N+ 
Sbjct: 435 MTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIR 494

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           + EYA  HL++L P+  G  V+LSN+YA  G W+ V ++R+ M+  G+KK+PGCSSIE  
Sbjct: 495 MGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQ 554

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G IH+F+ G+ SHP  +EIY KL E+  +L   G++P+ + +L  +EE++ +E  L  HS
Sbjct: 555 GSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHS 614

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           ERLAIA+GL++++   PIRI+KNLR+C DCH V KL+S +YNREI++RD  RFHHF+ G+
Sbjct: 615 ERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGS 674

Query: 649 CSCMDYW 655
           CSC D+W
Sbjct: 675 CSCKDFW 681


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/720 (36%), Positives = 390/720 (54%), Gaps = 72/720 (10%)

Query: 3   DNPP--------QHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL 54
           D PP        + +ET  +  ++L  H N      N           SLI    +   L
Sbjct: 32  DPPPFRFPASTLKFLETHYSSSLNLTTHFNNNKDDCNESTFKPDKFYASLIDDSIHKTHL 91

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
            QI+ ++L TGL +  +  +KL    +      +  AR++FD+ P P+++ WN ++R YS
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKAS--NIGEVSCARKLFDKFPDPDVFLWNAIVRCYS 149

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
                  +  ++ ++   +   P+ F+FP V+KA + L    +G+ +HG + +  FE D+
Sbjct: 150 RHGFFGHAIEMYARMQV-ACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDV 208

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ N L+  YA CG++  A  VF  +  + +VSW S+ISG+ Q G   +A+ ++ EM   
Sbjct: 209 FVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKT 268

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGR------------------------WPNEALSIFH 270
           NV+PD + +V+VL A     DLE G+                        +      +  
Sbjct: 269 NVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVA 328

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK---------------- 314
            L  ++  NP    + +++S   + G  +  +++   MK + I+                
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388

Query: 315 --------LNCYLT-----------TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
                   ++ Y++           TSLID Y KCG++D A  VF  +  +DV VWS M+
Sbjct: 389 GSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMM 448

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
            G+ ++G GRE++ LF  M++A V PN VTF  +L AC +SGLV+EG   F++M   YG+
Sbjct: 449 VGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGI 507

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
            P  +HY C+VD+LGRAG LD A  F+  MPI PG SVWGALL ACKIH +V L EYA  
Sbjct: 508 EPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAE 567

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
            L  L+P N G  V LSN+YA +  WD V+++R  MR  GL K  G S IE+NG++  F 
Sbjct: 568 RLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQ 627

Query: 536 AGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
           AG+ +HP  KEI+ +++++  RLK  G+VP+   +L  +  E+ +E   N HSERLAIAY
Sbjct: 628 AGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCN-HSERLAIAY 686

Query: 596 GLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GLIS  P   +RI KNLR C +CH   KLISKL +REI++RD  RFHHF+ G CSC DYW
Sbjct: 687 GLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/681 (37%), Positives = 376/681 (55%), Gaps = 74/681 (10%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREM 94
           V SL+  C ++    + KQ+H+ +++ G+  D     S   L+  C       +E A E 
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCF-----DIETAHEY 371

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F      N+  WN ++ AY       +S+ IFLQ+       PN++T+P +++    L  
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEG-LMPNQYTYPSILRTCTSLGA 430

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             +G+ IH  VIKS F+ ++++ + LI  YA  G+L  A  +   + ++DVVSW +MI+G
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEV--------------------------------- 241
           + Q   F +A++L++EME + ++ D +                                 
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSED 550

Query: 242 -----TMVAVLSACAKKRD--LEFGR--------WP------------NEALSIFHELQL 274
                 +V++ + C + +D  L F +        W              EAL +F ++  
Sbjct: 551 LSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMN- 609

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
              V  + FTF S +SA A    +  G QIHA M K G       +  LI +Y+KCG+++
Sbjct: 610 QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A   F  +  ++V  W+ MI G++ +G G EA+ LF  M++  + PN VTF  VL ACS
Sbjct: 670 DAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACS 729

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GLV+EG  +F  M   +G+VP  +HY C+VD+LGRA LL  A EFIE+MPI P A +W
Sbjct: 730 HVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIW 789

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
             LL AC +H+N+E+ E+A  HLLELEPE+    VLLSN+YA +GKWD     R+ M+  
Sbjct: 790 RTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDR 849

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KKEPG S IEV   IH F  G+  HPL ++IY  +D++  R    GYV +R +LL  V
Sbjct: 850 GVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDV 909

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           E+E     A  +HSE+LA+A+GL+S+  + PIR++KNLRVC DCH   K +SK+ NR I+
Sbjct: 910 EQEQKDPTAY-IHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIV 968

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD YRFHHF GG CSC DYW
Sbjct: 969 VRDAYRFHHFEGGVCSCKDYW 989



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 212/490 (43%), Gaps = 78/490 (15%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           L + C N   L   K++H ++ ++G   +    S+L           ++ A ++FD IP 
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYL--AHGEVDNAIKLFDDIPS 73

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVGQ 159
            N+  WN +I    +     Q   +F  L+      P+E TF  V++A +     F+V +
Sbjct: 74  SNVSFWNKVISGLLAKKLASQVLGLF-SLMITENVTPDESTFASVLRACSGGKAPFQVTE 132

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  +I   F     + N LI  Y+  G + +A  VF  +  KD VSW +MISG  Q G
Sbjct: 133 QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNG 192

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG-------------------- 259
             ++AI L+ +M    V P      +VLSAC K    + G                    
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCN 252

Query: 260 -------RWPN---------------------------------EALSIFHELQLSKNVN 279
                  RW N                                  AL +F ++QL   + 
Sbjct: 253 ALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLD-CMK 311

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD  T  S+LSACA +GA   G Q+H+ + K G+  +  +  SL+D+Y KC +++ A E 
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F T ++ +V +W+ M+  +   G   E+  +F +MQ   + PN  T+ ++L  C+  G +
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 400 DEGRMFFNQMEPVYGVVPGVKH--YTC--MVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           D G     Q+     +  G +   Y C  ++DM  + G LD A   ++++      S W 
Sbjct: 432 DLGEQIHTQV-----IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVS-WT 485

Query: 456 ALLGACKIHE 465
           A++     H+
Sbjct: 486 AMIAGYTQHD 495



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 60/284 (21%)

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + +  +  T++ +   C   G++    ++HA++ K G      L + LID+Y   G +D 
Sbjct: 4   RGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDN 63

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-- 393
           A+++F  + S +V  W+ +I+G        + L LFS M    V P+  TF +VL AC  
Sbjct: 64  AIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSG 123

Query: 394 ----------------------------------SHSGLVDEGRMFFNQMEPVYGVVPGV 419
                                             S +G VD  ++ F ++      +   
Sbjct: 124 GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL-----FLKDS 178

Query: 420 KHYTCMVDMLGRAGLLDEAVEF---IEKMPIVPGASVWGALLGACKIHENVELAE----- 471
             +  M+  L + G  DEA+     + K  ++P   V+ ++L AC   E  +L E     
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 472 ----------YACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
                     + C+ L+ L     G L+    I++K  + D +S
Sbjct: 239 IVKWGLSSETFVCNALVTLYSR-WGNLIAAEQIFSKMHRRDRIS 281


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/626 (39%), Positives = 365/626 (58%), Gaps = 33/626 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFD 96
           SL+  C   + L   ++IH+ +   GL  D   A+ L T    C     +S++ ARE+FD
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKC-----NSVQEAREIFD 317

Query: 97  QIPQPNLYTWNTLIRAYSSSA----EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++ + ++ +W+ +I  Y+ S     E I      L+ +     FPN+ TF  +++A    
Sbjct: 318 RMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAH 377

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ IH  + K  FE D  +  ++ + YA CG +  A  VF  +  K+VV+W S +
Sbjct: 378 GALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFL 437

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           S +++ G    A +++ EM   NV    V+   +++  A+  D+         + +F  L
Sbjct: 438 SMYIKCGDLSSAEKVFSEMPTRNV----VSWNLMIAGYAQNGDI---------VKVFELL 484

Query: 273 QLSK--NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
              K     PD  T +++L AC  L  ++ G  +HA+  K G++ +  + TSLI MY+KC
Sbjct: 485 SSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 544

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G + +A  VF  + +RD   W+ M+AG+  +G G EA+DLF RM + +V PN +T T V+
Sbjct: 545 GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACS +GLV EGR  F  M+  + + P  +HY CMVD+LGRAG L EA EFI+ MP  P 
Sbjct: 605 SACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPD 664

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
            SVW ALLGACK H NV+LAE A  H+LELEP      + LSNIYA+ G+WD+ +++R+ 
Sbjct: 665 ISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRV 724

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   GLKK+ G SSIE++G IH F+A + +HP    I+++L+ +   +K  GY P+   +
Sbjct: 725 MDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFV 784

Query: 571 LQLVEEEDVQ-EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           L  V  +DVQ E+AL  HSE+LAIAYGL+      PIRI+KNLRVCGDCHT  K ISK+ 
Sbjct: 785 LHDV--DDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIR 842

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            REI+ RD  RFH+F  G CSC D+W
Sbjct: 843 KREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 220/482 (45%), Gaps = 58/482 (12%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +I+ C   ++    K +H Q+   G+  D Y  + L        F  +  A ++F ++  
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN--FYSKFEDVASAEQVFRRMTL 119

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ TW+++I AY+ +  P ++F  F ++  ++   PN  TF  ++KA         G+ 
Sbjct: 120 RDVVTWSSMIAAYAGNNHPAKAFDTFERMT-DANIEPNRITFLSILKACNNYSILEKGRK 178

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IH +V     E D+ ++ +LI  Y+ CG++++A  VF  + +++VVSW ++I    Q   
Sbjct: 179 IHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRK 238

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             +A ELY +M    + P+ VT V++L++C     L  GR                    
Sbjct: 239 LNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR-------------------- 278

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
                                 +IH+ + ++G++ +  +  +LI MY KC ++ +A E+F
Sbjct: 279 ----------------------RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF 316

Query: 341 HTVKSRDVFVWSTMIAGFAMYGC-GREALD----LFSRMQEAKVKPNAVTFTNVLCACSH 395
             +  RDV  WS MIAG+A  G   +E++D    L  RM+   V PN VTF ++L AC+ 
Sbjct: 317 DRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTA 376

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G +++GR    ++  V G        T + +M  + G + EA +   KM        W 
Sbjct: 377 HGALEQGRQIHAELSKV-GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWT 434

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           + L       ++  AE   S   E+   N  +  L+   YA+ G    V EL   M+  G
Sbjct: 435 SFLSMYIKCGDLSSAEKVFS---EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG 491

Query: 516 LK 517
            +
Sbjct: 492 FQ 493



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 48/343 (13%)

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
           E IQ     L ++       N  T+  VI+  A+  +F  G+ +H  + +   E D+++ 
Sbjct: 39  EAIQ----LLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           NSLI+FY+   D+A A  VF  +  +DVV+W+SMI+ +       KA + +  M      
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM------ 148

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                                                  N+ P+  TF+S+L AC     
Sbjct: 149 ------------------------------------TDANIEPNRITFLSILKACNNYSI 172

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           ++ G +IH  +K  G++ +  + T+LI MY+KCG +  A EVFH +  R+V  W+ +I  
Sbjct: 173 LEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA 232

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
            A +    EA +L+ +M +A + PNAVTF ++L +C+    ++ GR   + +    G+  
Sbjct: 233 NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE-RGLET 291

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            +     ++ M  +   + EA E  ++M      S W A++  
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS-WSAMIAG 333



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 181/414 (43%), Gaps = 39/414 (9%)

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L I  +  L  N N    T+  V+  CA+    + G  +H ++ + G++++ YL  SLI+
Sbjct: 44  LGIIKQRGLLVNSN----TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
            Y+K  ++  A +VF  +  RDV  WS+MIA +A      +A D F RM +A ++PN +T
Sbjct: 100 FYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRIT 159

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F ++L AC++  ++++GR     ++ + G+   V   T ++ M  + G +  A E   KM
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAM-GMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLE--LEPENHGALVLLSNIYAKTGKWDN 503
                 S W A++ A   H  +  A      +L+  + P N    V L N        + 
Sbjct: 219 TERNVVS-WTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLNSCNTPEALNR 276

Query: 504 VSELRKHMRVSGLKKEP-----------GCSSIEVNGEI------------HKFLAG-ES 539
              +  H+   GL+ +             C+S++   EI               +AG   
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRS---HLLQLVEEEDVQEQALNLHSERLAIAYG 596
           S    KE   ++ +++ R++  G  PN+     +L+        EQ   +H+E   + + 
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           L   + S    I      CG  +   ++ SK+ N+ ++    +   + + G+ S
Sbjct: 397 L---DRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLS 447


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 362/608 (59%), Gaps = 54/608 (8%)

Query: 55  KQIHTQMLRTGLF-FDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +Q+H   +R+GLF  DP+SAS L   +  C     S    AR+ FD+IP PN      + 
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHC-----SRPIDARKAFDEIPSPNPVIITAMA 163

Query: 111 RAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
             Y  +     S  +F +L+ + S    +E        A+AR+    +  ++H +V+K+ 
Sbjct: 164 SGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTG 223

Query: 170 FEDDLFISNSLIHFYAICG--DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
            + D  + N+++  YA  G  DL  A  VF  + +KDVVSWNSMI+ + Q G    A+ L
Sbjct: 224 LDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGL 282

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           YR+M                                        L +S ++  +  T  +
Sbjct: 283 YRKM----------------------------------------LNVSGSIKCNAVTLSA 302

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L ACA  G +  G  IH ++ + G++ N Y+ TS++DMY+KCG ++ A + F  +K ++
Sbjct: 303 ILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKN 362

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  WS MI G+ M+G G+EALD+F+ M  +   PN +TF +VL ACSH+GL+D+GR ++N
Sbjct: 363 ILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYN 422

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M+  +G+ PGV+HY CMVD+LGRAG LDEA   I++M + P A++WGALL AC+IH+NV
Sbjct: 423 AMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNV 482

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           ELAE +   L EL+  N G  VLLSNIYA+ G W +V  +R  ++  G++K PG SS+E+
Sbjct: 483 ELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVEL 542

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G  H F  G+ SHP  KEIYS L +++ +++  GYVPN   +L  ++EE+ +  AL++H
Sbjct: 543 KGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEE-KASALHIH 601

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LAIA+ L++  P   I ++KNLRVC DCHT  KLI+K+  REI++RD  RFHHF+ G
Sbjct: 602 SEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDG 661

Query: 648 NCSCMDYW 655
           +CSC DYW
Sbjct: 662 SCSCGDYW 669


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/650 (37%), Positives = 382/650 (58%), Gaps = 71/650 (10%)

Query: 64  TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSF 123
           TGL  D Y+  K  +      F  LE+ R+        N   W  ++  Y+ + +  ++ 
Sbjct: 201 TGLV-DMYAKCKCVSEAEF-LFKGLEFDRK--------NHVLWTAMVTGYAQNGDGYKA- 249

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           + F + ++      N++TFP ++ A + ++    G+ +HG ++KS F  ++++ ++L+  
Sbjct: 250 VEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDM 309

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY-----REMEMEN--- 235
           YA CGDL  A  +   +   DVVSWNS++ GFV+ G  E+A+ L+     R M++++   
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF 369

Query: 236 -----------VKPDEVTMV--------------AVLSACAKKRDLEFG----------- 259
                      + P  V  +              A++   AK  D++             
Sbjct: 370 PSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKD 429

Query: 260 --RWPN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
              W +            E+L IF +++++  VNPD+F   S+LSACA+L  ++ G Q+H
Sbjct: 430 VISWTSLVTGYAQNNSHEESLKIFCDMRVT-GVNPDQFIVASILSACAELTLLEFGKQVH 488

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
               K G++ +  +  SL+ MY KCG LD A  +F +++ +DV  W+ +I G+A  G GR
Sbjct: 489 LDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGR 548

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
            +L  +  M  +  +P+ +TF  +L ACSH+GLVDEGR +F QM  VYG+ PG +HY CM
Sbjct: 549 NSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACM 608

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
           +D+ GR+G LDEA + +++M + P A+VW +LL AC++HEN+ELAE A ++L ELEP N 
Sbjct: 609 IDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNA 668

Query: 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCK 545
              V+LSN+Y+ + KW++V+++RK M+  G+ KEPGCS +E+N  ++ F++ +  HP   
Sbjct: 669 MPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREA 728

Query: 546 EIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP 605
           EIY+K+DEI+ R+K  GYVP+ S  L  +++E  +E  L  HSE+LA+A+GL++  PS P
Sbjct: 729 EIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEG-KEVGLAYHSEKLAVAFGLLAAPPSAP 787

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IRI KNLRVCGDCH+  K IS+++ R I+LRD   FHHFR G CSC DYW
Sbjct: 788 IRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 203/476 (42%), Gaps = 119/476 (25%)

Query: 9   METLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           M   S+ V+S P +P                        CK +  L+ IHT    +  + 
Sbjct: 30  MHKFSSKVLSFPHNP------------------------CKFMAFLRSIHTTTAAS--YE 63

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE---------- 118
             Y  ++L     L     +  AR++FD++PQ + Y+WNT+I +Y +             
Sbjct: 64  SIYQTNQLLNQ--LSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDG 121

Query: 119 ---------------------PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
                                 +++F +F  +     +  ++FT   V++  + L   + 
Sbjct: 122 CSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEG-WKASQFTLGSVLRVCSSLGLIQT 180

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGF 215
           G+ IHG V+K+ FE ++F+   L+  YA C  ++ A  +F  +   +K+ V W +M++G+
Sbjct: 181 GEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGY 240

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G   KA+E +R M  + V+ ++ T   +L+AC+                        
Sbjct: 241 AQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS------------------------ 276

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                      SVL+ C        G Q+H  + K G   N Y+ ++L+DMY KCG+L  
Sbjct: 277 -----------SVLARC-------FGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKN 318

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +  T++  DV  W++++ GF  +G   EAL LF  M    +K +  TF +VL  C  
Sbjct: 319 AKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVV 378

Query: 396 SGLVDEGRMFFNQMEPVYGVV--PGVKHY----TCMVDMLGRAGLLDEAVEFIEKM 445
             +           + V+G++   G ++Y      +VDM  + G +D A    EKM
Sbjct: 379 GSI---------NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM 425



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 171/383 (44%), Gaps = 57/383 (14%)

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           ++IH     +S+E  ++ +N L++  +  G +  A  +F  + +KD  SWN+MIS +V  
Sbjct: 52  RSIH-TTTAASYES-IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNV 109

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G   +A EL+   +  + K        +   C      +FG    EA  +F  ++L +  
Sbjct: 110 GRLVEARELF---DGCSCKSSITWSSIISGYC------KFG-CKVEAFDLFRSMRL-EGW 158

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
              +FT  SVL  C+ LG +  G  IH  + K G + N ++ T L+DMY KC  + +A  
Sbjct: 159 KASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218

Query: 339 VFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           +F  ++   ++  +W+ M+ G+A  G G +A++ F  M    V+ N  TF  +L ACS  
Sbjct: 219 LFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSV 278

Query: 397 GLVDEGRMFFNQMEPVY---GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
                 R F  Q+       G    V   + +VDM  + G L  A   +E M      S 
Sbjct: 279 ----LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVS- 333

Query: 454 WGALLGACKIH---------------ENVELAEYA------CSHLLELEPEN-HGALV-- 489
           W +L+     H                N+++ +Y       C  +  + P++ HG ++  
Sbjct: 334 WNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKT 393

Query: 490 ------LLSN----IYAKTGKWD 502
                 L+SN    +YAKTG  D
Sbjct: 394 GFENYKLVSNALVDMYAKTGDMD 416


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/657 (38%), Positives = 383/657 (58%), Gaps = 50/657 (7%)

Query: 5   PPQHMETLSTPVISLPRHPNPT-TLTVNNGHQHHPH-PVFSLIKQCKNIKQLKQ---IHT 59
           P + M + +  +    +  N    LT+++G +      V SL+  C       +   IH+
Sbjct: 212 PTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHS 271

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
             ++ GL  + + ++KL    A   F SL+  +++FD++   +L +WN++I+AY  + +P
Sbjct: 272 YSIKHGLESELFVSNKLIDLYA--EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329

Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI-KSSFEDDLFISN 178
           +++ ++F ++   S   P+  T   +    ++L + R  +++ G  + K  F +D+ I N
Sbjct: 330 LRAILLFQEMRL-SRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGN 388

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
           +++  YA  G +  A  VF  +  KDV+SWN++ISG+ Q GF  +AIE+Y  ME E    
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEG--- 445

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
                                                  ++ ++ T+VSVL AC+Q GA+
Sbjct: 446 -------------------------------------GEISANQGTWVSVLPACSQAGAL 468

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
             G+++H ++ K G+ L+ ++ TSL DMY KCG LD AL +F+ +   +   W+T+IA  
Sbjct: 469 RQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACH 528

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
             +G G +A+ LF  M +  VKP+ +TF  +L ACSHSGLVDEG   F  M+  YG+ P 
Sbjct: 529 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPS 588

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           +KHY CMVD+ GRAG L+ A+ FI+ MP+ P AS+WGALL AC++H NV+L + A  HL 
Sbjct: 589 LKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLF 648

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           E+EPE+ G  VLLSN+YA  GKW+ V E+R      GL+K PG SS+EV+ ++  F  G 
Sbjct: 649 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGN 708

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
            +HP+ +E+Y +L  +  +LK  GYVP+   +LQ V E+D +E  L  HSERLA+A+ LI
Sbjct: 709 QTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDV-EDDEKEHILMSHSERLAMAFALI 767

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +      IRI KNLRVCGDCH+V K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 768 TTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 186/420 (44%), Gaps = 59/420 (14%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLE 89
           N         V +L + C N++  K +H +++ +    +   ++KL    C LG   ++ 
Sbjct: 47  NGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLG---NVA 103

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSS---SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            AR  FD I   ++Y WN +I  Y     S+E I+ F +F+    +S   P+  TFP V+
Sbjct: 104 LARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM---LSSGLQPDYRTFPSVL 160

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           KA   +     G  IH + +K  F  D++++ SLIH Y   G +  A  +F  +  +D+ 
Sbjct: 161 KACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMG 217

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+MISG+ Q G  ++A+ L   +       D VT+V++LSAC +  D  F R      
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGD--FNR------ 265

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                                             GV IH+   K G++   +++  LID+
Sbjct: 266 ----------------------------------GVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y + G+L    +VF  +  RD+  W+++I  + +      A+ LF  M+ ++++P+ +T 
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTL 351

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            ++    S  G +   R            +  +     +V M  + GL+D A      +P
Sbjct: 352 ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +HA++       N  ++  L+++Y   GN+  A   F  + +RDV+ W+ MI+G+   G 
Sbjct: 73  LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132

Query: 364 GREALDLFSR-MQEAKVKPNAVTFTNVLCACSHSGLVDEGR------MFFNQMEPVYGVV 416
             E +  FS  M  + ++P+  TF +VL AC +   V +G       + F  M  VY V 
Sbjct: 133 SSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVY-VA 188

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-GACK 462
             + H  C      R G +  A    ++MP     S W A++ G C+
Sbjct: 189 ASLIHLYC------RYGAVVNARILFDEMPTRDMGS-WNAMISGYCQ 228


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/640 (40%), Positives = 368/640 (57%), Gaps = 17/640 (2%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP 79
           P+ P P         +     + + +  CKN+ Q+KQ+H ++L  GL    Y  +KL   
Sbjct: 28  PQKPTPFYQIQQQQPKQLESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRT 87

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
                     Y   +F+Q+  PN + +N LIR Y    E ++    F  L+      P  
Sbjct: 88  LTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGYLIE-ERLKESTEFYSLMRKEGVVPVS 146

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVI-KSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           FTF  + KA    +   +G+ IHG  I    F +DL + NS+I  Y  CG L     VF 
Sbjct: 147 FTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFD 206

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
            +  +DV+SW  +IS +V+ G  E A EL+  + ++    D V    ++S  A+      
Sbjct: 207 EMPNRDVISWTELISAYVKSGNMESAGELFDGLPVK----DMVAWTVMVSGFAQNAK--- 259

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKLN 316
              P EA+  F ++Q    V  DE T + V+SACAQLGA      I    +K   G K +
Sbjct: 260 ---PREAIMFFEKMQ-EFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHS 315

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + ++LIDMY+KCG++  A  VF  +K R+V+ +S+MI GFAM+G   +A+ LF  M +
Sbjct: 316 VVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVK 375

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            ++KPN VTF  VL ACSH+G+V++G   F  ME  YG+ P   HYTCMVD+LGRAG L 
Sbjct: 376 TEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQ 435

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA E ++ MPI P   VWGALLGAC+IH++ ++A  A +HL ELEP   G  +LL+NIYA
Sbjct: 436 EAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYA 495

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEV-NGEIHKFLAGESSHPLCKEIYSKLDEIV 555
             G+W++VS +RK MR  GL+K P  S IE   G +H+F +G+ +HP   EI   L++++
Sbjct: 496 SCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLL 555

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            RL++ GY P+ S +   V +ED + + L  HSE+LA+A+GLIS  P   IRIVKNLR+C
Sbjct: 556 DRLEAKGYQPHLSSVSYDVNDED-KRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRIC 614

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH+V    S++  REI++RD  RFHHF  G CSC ++W
Sbjct: 615 EDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/681 (38%), Positives = 380/681 (55%), Gaps = 86/681 (12%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFD 69
           S PV +L  +    +L    GH  + +    L+K C   K  ++ +QIH Q+L+ G   D
Sbjct: 43  SDPVSALEMYVRMVSL----GHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLD 98

Query: 70  PY----------------SASKLF-----------TPCALGTFSSLEY--AREMFDQIPQ 100
            Y                 A K+F           T    G  S  ++  AR++FD+I +
Sbjct: 99  RYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITE 158

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +WN +I  Y  +    ++  +F +++  +   P+E T   V+ A A+     +G+ 
Sbjct: 159 RDVVSWNAMITGYVENGRYEEALELFKEMM-RTNVRPDEGTLVSVVSACAQSGSIELGRQ 217

Query: 161 IHGMVIKS----SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +H  V        F   L I N+LI  Y+ CGD+  A+ +F  +  KDVVSWN++I G+ 
Sbjct: 218 VHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYT 277

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
               ++                                         EAL +F E+ L  
Sbjct: 278 HTNLYK-----------------------------------------EALLLFQEM-LRS 295

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKLNCYLTTSLIDMYTKCGNLD 334
              P++ T +SVL ACA LGA+DIG  IH  + K+  G+     L TSLIDMY KCG+++
Sbjct: 296 GECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIE 355

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A +VF+++  R +  W+ MI GFAM+G    A DLFSRM+  +V+P+ +TF  +L ACS
Sbjct: 356 AAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACS 415

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           HSGL+D GR  F  M   Y + P ++HY CM+D+LG +GL  EA E I  MP+ P   +W
Sbjct: 416 HSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIW 475

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL ACK H N+ELAE     L+++EPEN G+ VLLSNIYA  G+W++V+ +R  +   
Sbjct: 476 CSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGK 535

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KK PGCSSIEV+  +H+F+ G+  HP  +EIY  L+E+  +L+  G+ P+ S +LQ +
Sbjct: 536 GMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEM 595

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EEE  +E AL  HSE+LAIA+GLIS +P   + IVKNLRVC +CH   KLISK+Y REI+
Sbjct: 596 EEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIV 654

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
            RDR RFHHFR G CSC DYW
Sbjct: 655 ARDRTRFHHFRDGVCSCCDYW 675



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 204/422 (48%), Gaps = 80/422 (18%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L YA  +F+ I +PNL  WNT++R ++SS++P+ +  +++++V +  + PN ++FPF
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMV-SLGHLPNSYSFPF 69

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA------------------- 185
           ++K+ A+   F  G+ IH  V+K     D ++  SLI  YA                   
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 186 --IC----------GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
              C          GD   A  VF  I ++DVVSWN+MI+G+V+ G +E+A+EL++EM  
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            NV+PDE T+V+V+SACA+   +E GR                                 
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGR--------------------------------- 216

Query: 294 QLGAMDIGVQIHA----KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
                    Q+H+         G   +  +  +LID+Y+KCG+++ A  +F  +  +DV 
Sbjct: 217 ---------QVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVV 267

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+T+I G+      +EAL LF  M  +   PN VT  +VL AC+H G +D GR     +
Sbjct: 268 SWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYI 327

Query: 410 E-PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           +  + GV       T ++DM  + G ++ A +    M +    S W A++    +H    
Sbjct: 328 DKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM-LYRSLSSWNAMIFGFAMHGRAN 386

Query: 469 LA 470
            A
Sbjct: 387 AA 388


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 364/620 (58%), Gaps = 49/620 (7%)

Query: 39  HPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H     +K C  +  L   + +    ++ GL  D +  S L    A  +   +  AR +F
Sbjct: 121 HTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYA--SCGDVAAARLVF 178

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D   +  +  WN ++ AY  + + ++   +F  ++     F +E T   V+ A  R+   
Sbjct: 179 DAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAF-DEVTLVSVVTACGRIGDA 237

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           ++G+ + G V +     +  +  +L+  YA CG++  A  +F  +  +DVV+W++MISG+
Sbjct: 238 KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGY 297

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q                                C             EAL +F E+QL+
Sbjct: 298 TQA-----------------------------DQC------------REALGLFSEMQLA 316

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + V P++ T VSVLSACA LGA++ G  +H+ ++++ + L   L T+L+D Y KCG +D 
Sbjct: 317 R-VEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A+E F ++  ++ + W+ +I G A  G GREAL+LFS M+EA ++P  VTF  VL ACSH
Sbjct: 376 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSH 435

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           S LV+EGR  F+ M   YG+ P V+HY CMVD+LGRAGL+DEA +FI  MPI P A +W 
Sbjct: 436 SCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWR 495

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL +C +H NV + E A   ++ L P + G  VLLSNIYA  G+W + + +RK M+  G
Sbjct: 496 ALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRG 555

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++K PGCS IE++G + +F A +S HP  +EIY K++E++ R+K  GYVPN + +   VE
Sbjct: 556 IEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVE 615

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E + +E +++ HSE+LAIA+GL+ ++P   IR+ KNLRVC DCH+  KLISK+Y+REI++
Sbjct: 616 ERE-KEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVV 674

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RDR  FHHF+ G CSC DYW
Sbjct: 675 RDRNIFHHFKDGTCSCNDYW 694



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 204/411 (49%), Gaps = 53/411 (12%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTLIR 111
           L Q+H  ++++G       +       A  + + L YA  +F   P+P L T  +N L+R
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           A+  +  P  +  +F+++++ +   P ++ T    +K+ +R+    VG+ +    +K   
Sbjct: 92  AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
             D F+ +SLIH YA CGD+A A  VF    +  VV WN++++ +++ G + + +E+++ 
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKG 211

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M    V  DEVT+V+V++AC +  D + G+W                             
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLGKW----------------------------- 242

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
                        +   + ++G+  N  L T+L+DMY KCG + KA  +F  ++SRDV  
Sbjct: 243 -------------VAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVA 289

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM---FFN 407
           WS MI+G+      REAL LFS MQ A+V+PN VT  +VL AC+  G ++ G+    +  
Sbjct: 290 WSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVR 349

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +       + G    T +VD   + G +D+AVE  E MP V  +  W AL+
Sbjct: 350 RKRLSLTTILG----TALVDFYAKCGCIDDAVEAFESMP-VKNSWTWTALI 395


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 358/606 (59%), Gaps = 48/606 (7%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQLK+IH  +LRTG        ++L     L     + YAR++FD++ +P ++ WNTL +
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQLLEN--LVVIGDMCYARQVFDEMHKPRIFLWNTLFK 82

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y  +  P +S +++ ++  +    P+EFT+PFV+KA ++L  F  G A+H  V+K  F 
Sbjct: 83  GYVRNQLPFESLLLYKKM-RDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
               ++  L+  Y   G+L+ A  +F  +  KD+V+WN+ ++  VQ G    A+E + +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                             CA                          V  D FT VS+LSA
Sbjct: 202 ------------------CADA------------------------VQFDSFTVVSMLSA 219

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           C QLG+++IG +I+ + +K+ I  N  +  + +DM+ KCGN + A  +F  +K R+V  W
Sbjct: 220 CGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSW 279

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-- 409
           STMI G+AM G  REAL LF+ MQ   ++PN VTF  VL ACSH+GLV+EG+ +F+ M  
Sbjct: 280 STMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQ 339

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
                + P  +HY CMVD+LGR+GLL+EA EFI+KMP+ P   +WGALLGAC +H ++ L
Sbjct: 340 SNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMIL 399

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            +     L+E  P+     VLLSNIYA  GKWD V ++R  MR  G KK    SS+E  G
Sbjct: 400 GQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEG 459

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           +IH F  G+ SHP  K IY KLDEI+ +++  GYVP+   +   VE E+ +E +L+ HSE
Sbjct: 460 KIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEE-KECSLSHHSE 518

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LAIA+GLI   P  PIR++KNLR C DCH  +K +S L + EI++RD+ RFHHFR G C
Sbjct: 519 KLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVC 578

Query: 650 SCMDYW 655
           SC ++W
Sbjct: 579 SCKEFW 584


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 366/618 (59%), Gaps = 49/618 (7%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF-TPCALGTFSSLEYAREMFDQ 97
           H + +   Q KN+   + IH+ + R+ L  D +  + L    C  G  S    AR +FD 
Sbjct: 66  HSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSD---ARHVFDG 122

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           IP  ++ +W  LI  Y+ +  P ++  +   ++  + + P+ FTF   +KAA       +
Sbjct: 123 IPTRDVVSWTYLITGYAQNDMPAEALGLLPDML-RARFRPSGFTFTSFLKAAGACGGRGI 181

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H + +K + ++D+++ ++L+  YA C  + MA  VF  +  K+ VSWN++I+GF  
Sbjct: 182 GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF-- 239

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                                            A+K D E        L  F E+Q    
Sbjct: 240 ---------------------------------ARKGDGE------TTLMKFAEMQ-RNG 259

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                FT+ SV SA A++GA++ G  +HA M K G KL  ++  +++ MY K G++  A 
Sbjct: 260 FGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDAR 319

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  V  RD+  W+TM+  FA YG G+EA+  F  +++  ++ N +TF +VL ACSH G
Sbjct: 320 KVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGG 379

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV EG+ +F+ M+  Y V P + HY   VD+LGRAGLL EA+ F+ KMP+ P A+VWGAL
Sbjct: 380 LVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGAL 438

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC++H+N ++ +YA  H+ EL+PE+ G  VLL NIYA TG+WD+ + +RK M+ +G+K
Sbjct: 439 LGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVK 498

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEP CS +E+   +H F+A +S+HP  +EIY   +E+  R+K  GYVPN  ++L  ++E+
Sbjct: 499 KEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQ 558

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E  L  HSE++A+A+ LI++     IRI+KN+R+CGDCH+  + +S+++ REI++RD
Sbjct: 559 E-RETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRD 617

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF  G+CSC DYW
Sbjct: 618 TNRFHHFSNGSCSCGDYW 635



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 119/283 (42%), Gaps = 42/283 (14%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           L L+      P    +  +I A A+       +AIH  + +S    D F+ NSLIH Y  
Sbjct: 50  LDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCK 109

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG ++ A  VF  I  +DVVSW  +I+G+ Q     +A+ L  +M     +P   T    
Sbjct: 110 CGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT---- 165

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                                                 F S L A    G   IG Q+HA
Sbjct: 166 --------------------------------------FTSFLKAAGACGGRGIGEQMHA 187

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              K  +  + Y+ ++L+DMY +C  +D A+ VF  + S++   W+ +IAGFA  G G  
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGET 247

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            L  F+ MQ         T+++V  A +  G +++GR     M
Sbjct: 248 TLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHM 290



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 19/256 (7%)

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           +L L+  + P    + S+++ACAQ   +     IH+ + +  +  + +L  SLI MY KC
Sbjct: 51  DLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC 110

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A  VF  + +RDV  W+ +I G+A      EAL L   M  A+ +P+  TFT+ L
Sbjct: 111 GAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFL 170

Query: 391 CACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            A    G    GR    QM  +   Y +   V   + ++DM  R   +D A+   + +  
Sbjct: 171 KAAGACG----GRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDS 226

Query: 448 VPGASVWGALLG--ACKIHENVELAEYACSHLLELEPENHGAL-VLLSNIY---AKTGKW 501
               S W AL+   A K      L ++A     E++    GA     S+++   A+ G  
Sbjct: 227 KNEVS-WNALIAGFARKGDGETTLMKFA-----EMQRNGFGATHFTYSSVFSALARIGAL 280

Query: 502 DNVSELRKHMRVSGLK 517
           +    +  HM  SG K
Sbjct: 281 EQGRWVHAHMIKSGQK 296


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/647 (39%), Positives = 373/647 (57%), Gaps = 66/647 (10%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           VI+ P H  P  ++ ++   HH   +   +  C  I QLKQ+H Q +RT     P   + 
Sbjct: 6   VIAPPSHL-PHAISNSDSFTHHRRLLL-FLNSCTCISQLKQLHAQTIRTTSSHHP---NT 60

Query: 76  LFTPCALGTFSSL---EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVY 131
            F    +  FSSL    YA  +F QI  PN + WN LIRA + S +  Q +  ++ +++ 
Sbjct: 61  FFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLE 120

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
                 ++ TFPFV+KA A L     G+ IH  ++K  F+ D++I+NSL+HFYA C  L 
Sbjct: 121 QGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLD 180

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  VF  + ++ +VSWN +I  FV+ G F+ A+ L+ EM+ +  +PD  T+ ++ +ACA
Sbjct: 181 FAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACA 239

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                                                      +G++ +G+         
Sbjct: 240 G------------------------------------------MGSLSLGI-------VN 250

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
            + LN  L    +DMY KCG+L+ AL++FH +  RDV  W++MI GF+ +G    AL+ F
Sbjct: 251 DVLLNTSL----VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYF 306

Query: 372 SRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             M +  K+ PNA+TF  VL AC+H GLV EGR +F+ M   Y + P ++HY C+VD+L 
Sbjct: 307 GCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLA 366

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGA-CKIHENVELAEYACSHLLELEPE-NHGAL 488
           RAGL+DEA++ +  MP+ P   +W +LL A CK +  VEL+E     +LE E     G  
Sbjct: 367 RAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVY 426

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLS +YA   +W++V  +RK M   G+ KEPGCSSIE++G  H+F AG++SHP  +EIY
Sbjct: 427 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 486

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
           S LD I  R++  GY P+ S    + E  D ++ +L LHSERLAIA+GL+  +P  PIRI
Sbjct: 487 SALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRI 546

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLRVC +CH V KLIS+++NREI++RDR RFHHF+ G CSCMDYW
Sbjct: 547 FKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 593


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 382/666 (57%), Gaps = 87/666 (13%)

Query: 17  ISLPRHP---------NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF 67
           ISL  HP         +P+  T  N H+     + SL + C ++ QLKQ+H   LRT   
Sbjct: 3   ISLLLHPLSPHIQPANSPSASTAGNHHRR----ILSLAETCSDMSQLKQLHAFTLRTTY- 57

Query: 68  FDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQS 122
             P   + LF    +     +FS + YA  +FD I   + + WNTLIRA +   +   ++
Sbjct: 58  --PDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEA 115

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
           FM++ +++      P++ TFPFV+KA A +     G+ +H  ++K  F  D++++N LIH
Sbjct: 116 FMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIH 175

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
           FY  CG L +A  VF  + ++ +VSWNSMI   V+ G ++ A++L+              
Sbjct: 176 FYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLF-------------- 221

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                      RD++                  K+  PD +T  SVLSACA LG++ +G 
Sbjct: 222 -----------RDMQ------------------KSFEPDGYTMQSVLSACAGLGSLSLGT 252

Query: 303 QIHAKMKKQ---GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
             H  + +     + ++  +  SLI+MY KCG+L  A +VF  ++  D+  W+ MI GFA
Sbjct: 253 WSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFA 312

Query: 360 MYGCGREALDLFSRM-QEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
            +G   EA++ F  M +E K VKPN+VTF  +L AC+H G+V++GR +F+ M   YG+ P
Sbjct: 313 THGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEP 372

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSH 476
            ++HY C++D+L RAG + EA++ +  MP+ P A +W +LL AC K   +VEL+E    +
Sbjct: 373 ALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARN 432

Query: 477 LLELEPENH-------GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
           ++    +N        GA VLLS +YA   +W++V  +RK M   G++KEPGCSSIE+NG
Sbjct: 433 IIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEING 492

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
             ++F AG++SHP  K+IY +L  I  RL+S     N S           +E +L LHSE
Sbjct: 493 ISNEFFAGDTSHPQTKQIYQQLKVIDDRLRSIVDATNDSS----------KEYSLRLHSE 542

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           RLAIA+GLIS+ P  PIRI KNLRVC DCH V KLISK++N EI++RDR RFHHF+ G+C
Sbjct: 543 RLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 602

Query: 650 SCMDYW 655
           SC+DYW
Sbjct: 603 SCLDYW 608


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/633 (38%), Positives = 381/633 (60%), Gaps = 25/633 (3%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           P+ ++ T  N + H+P     L+  CK++  L QIH Q++ +G F   +S + L    +L
Sbjct: 42  PSLSSSTYTN-YLHYPR----LLSSCKHLNPLLQIHAQIIVSG-FKHHHSITHLINLYSL 95

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
             F   + AR +FD  P P+   WN++IRAY+ S +  ++  ++  +V       + F  
Sbjct: 96  --FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIG 153

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
             ++   +++   +  + +   + K     D+   N++I   +   D  +A  VF  +  
Sbjct: 154 AGLVDMYSKMGDLKRAREVFDKMPKR----DVVAWNAMIAGLSQSEDPYVARRVFDQMVD 209

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           +D VSW +M++G+   G F + +EL+ +M++ NV  + +    + +  AK          
Sbjct: 210 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAK---------- 259

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            EA+S FH+++L +N +P+  TFVSVL A A L A   G+  HA + + G   N  +  S
Sbjct: 260 -EAISSFHQMRL-ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 317

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LIDMY KCG LD + ++F+ +  +D   W+ M++G+A++G G  A+ LFS MQE++V+ +
Sbjct: 318 LIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 377

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
           +V+F +VL AC H+GLV+EGR  F+ M   Y + P ++HY CMVD+LGRAGL DE + FI
Sbjct: 378 SVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFI 437

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           + MP+ P A VWGALLG+C++H NV+L E A  HL++LEP N    V+LS+IYA++G+W 
Sbjct: 438 KVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWA 497

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           +  + R  M   GLKK PGCS +E+  ++H F  G+ SHP  + ++   + ++ +++  G
Sbjct: 498 DAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIG 557

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           YVP+RS +LQ VEEED +E  L  HSERLAI + L++  P   I+IVKNLRVC DCHT  
Sbjct: 558 YVPDRSCVLQNVEEED-KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTT 616

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K ISK+  R I++RD  RFHHF  G CSC DYW
Sbjct: 617 KFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 361/595 (60%), Gaps = 47/595 (7%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSSLEYAREMFDQIPQP-NLYTW 106
           +I +L+QIH   +R G+        K  +F   +L +   + YA ++F +I +P N++ W
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           NTLIR Y+     I +F ++ ++  +    P+  T+PF+IKA   +   R+G+ IH +VI
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +S F   +++ NSL+H YA CGD+A AY VF  + +KD+V+WNS+I+GF + G       
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG------- 201

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
                                              P EAL+++ E+  SK + PD FT V
Sbjct: 202 ----------------------------------KPEEALALYTEMN-SKGIKPDGFTIV 226

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           S+LSACA++GA+ +G ++H  M K G+  N + +  L+D+Y +CG +++A  +F  +  +
Sbjct: 227 SLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +   W+++I G A+ G G+EA++LF  M+  + + P  +TF  +L ACSH G+V EG  +
Sbjct: 287 NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEY 346

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F +M   Y + P ++H+ CMVD+L RAG + +A E+I+ MP+ P   +W  LLGAC +H 
Sbjct: 347 FRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           + +LAE+A   +L+LEP + G  VLLSN+YA   +W +V ++RK M   G+KK PG S +
Sbjct: 407 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV   +H+FL G+ SHP    IY+KL E+  RL+S GYVP  S++   VEEE+ +E A+ 
Sbjct: 467 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE-KENAVV 525

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
            HSE++AIA+ LIS     PI +VKNLRVC DCH   KL+SK+YNREI++RDR R
Sbjct: 526 YHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/683 (38%), Positives = 381/683 (55%), Gaps = 75/683 (10%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF-----SSLEYAREMF 95
           VF      +NI   K I   +L+TG F      S +   CAL          LE A ++F
Sbjct: 48  VFRACSNKENISLGKIIFGFLLKTGYF-----ESDVCVGCALIDMFVKGNGDLESAYKVF 102

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++P  N+ TW  +I  +        +  +FL +V  S Y P+ FT   V+ A A +   
Sbjct: 103 DRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVL-SGYVPDRFTLSGVVSACAEMGLL 161

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC---GDLAMAYCVFVMIGKKDVVSWNSMI 212
            +G+  H +V+KS  + D+ +  SL+  YA C   G +  A  VF  +   +V+SW ++I
Sbjct: 162 SLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAII 221

Query: 213 SGFVQ-GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------------ 259
           +G+VQ GG   +AIEL+ EM    VKP+  T  +VL ACA   D+  G            
Sbjct: 222 TGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRL 281

Query: 260 ---------------RWPN-----EALSIFHELQL----------SKNVNPDE------- 282
                          R  N     +A  +  E  L          +K++N +E       
Sbjct: 282 ASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNE 341

Query: 283 ----------FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                     FTF S+LS  + +GA+  G QIH+++ K G K N ++  +LI MY++CGN
Sbjct: 342 IEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGN 401

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           ++ A +VF+ +   +V  W++MI GFA +G    AL+ F +M EA V PN VT+  VL A
Sbjct: 402 IEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSA 461

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH GL+ EG   F  M+  +G+VP ++HY C+VD+LGR+G L+EA+E +  MP    A 
Sbjct: 462 CSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADAL 521

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           V    LGAC++H N++L ++A   +LE +P +  A +LLSN++A  G+W+ V+E+RK M+
Sbjct: 522 VLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMK 581

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              L KE GCS IEV  ++HKF  G++SHP  +EIY +LD++  ++K  GY+P+   +L 
Sbjct: 582 ERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLH 641

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            VEEE  +EQ L  HSE++A+AYG IS   S+PIR+ KNLRVCGDCHT  K  S +  +E
Sbjct: 642 DVEEEQ-KEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKE 700

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I+LRD  RFHHF+ G CSC DYW
Sbjct: 701 IVLRDANRFHHFKDGTCSCNDYW 723



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 49/302 (16%)

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + +L +W+ LI  Y+++ +  ++   F  ++    ++PNE+ F  V +A +      +G+
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDML-ECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 160 AIHGMVIKSS-FEDDLFISNSLIH-FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            I G ++K+  FE D+ +  +LI  F    GDL  AY VF  +  ++VV+W  MI+ F Q
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            GF   A++L+ +M +    PD  T+  V+SACA                          
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACA-------------------------- 156

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC---GNLD 334
                           ++G + +G Q H  + K G+ L+  +  SL+DMY KC   G++D
Sbjct: 157 ----------------EMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVD 200

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMY-GCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            A +VF  +   +V  W+ +I G+    GC REA++LF  M + +VKPN  TF++VL AC
Sbjct: 201 DARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKAC 260

Query: 394 SH 395
           ++
Sbjct: 261 AN 262



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           RD+  WS +I+ +A      EA+  F  M E    PN   FT V  ACS+   +  G++ 
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRA-GLLDEAVEFIEKMP 446
           F  +         V     ++DM  +  G L+ A +  ++MP
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP 106


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/618 (39%), Positives = 362/618 (58%), Gaps = 53/618 (8%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSAS--KLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           +  ++ Q  Q+H ++L++G +   +     KLFT  AL     L YAR +   +  PN +
Sbjct: 2   EITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSF 61

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-----PNEFTFPFVIKAAARLVQFRVGQ 159
            +NT+IRAYS S +P ++F +FL +            P+ FT+PFV+KA ++    R G+
Sbjct: 62  YYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGK 121

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG+V KS    D +I+N+LIH Y++ G+  +AY VF  +  +DVVSW S+I GFV   
Sbjct: 122 QIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDND 181

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +AI L+  M +EN                                          + 
Sbjct: 182 RPIEAIRLFTHM-IEN-----------------------------------------GIE 199

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P+E T  SVL ACA  GA++ G +IH+ +K++    N  ++T+LIDMY KCG +D ALEV
Sbjct: 200 PNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEV 259

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F     +DV+VW+ +IAG A +G   +A++ F  M+++ VK +    T VL A  ++GLV
Sbjct: 260 FDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLV 319

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG +FF +++  + + P ++HY C+VDML RAG L +A EFI KMPI P A +W  L+ 
Sbjct: 320 SEGLLFFRRLKK-HKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIW 378

Query: 460 ACKIHENVELAEYACS--HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
            CKI  +VE +E       LL ++  + G+ VLL N+YA TGKW+  ++ R+ M   GL 
Sbjct: 379 GCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLM 438

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K P CS IE++G +H+F AG+S H     +Y KL+++  RL+  GY P  S +L  ++++
Sbjct: 439 KPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDD 498

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           +   Q L+ HSE+LA+++GL+   P   IRIVKNLR C DCH+  KLISK+Y R+I++RD
Sbjct: 499 EKASQLLH-HSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRD 557

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF GGNCSC D W
Sbjct: 558 RIRFHHFSGGNCSCGDRW 575


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 360/618 (58%), Gaps = 44/618 (7%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           + + ++++ C N+ +LK+I   ++  GL   P  ++ +   CA+    SL YA+ +F  I
Sbjct: 10  NAILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHI 69

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             P    WN++IR ++ S  P+Q+   + +++++S   P+ FTF F +KA  R+   +  
Sbjct: 70  LNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKC 129

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG +I++ +E D+ +   L+  Y   G + +A  VF  + ++D+V+WN+MIS + Q 
Sbjct: 130 EEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQA 189

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G+ ++A+ +Y  M  E                                          NV
Sbjct: 190 GYHQEALRVYDYMRNE------------------------------------------NV 207

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             D FT V +LS+C+ +GA+++GV++H    ++G+  N ++  +LIDMY KCG+LD ALE
Sbjct: 208 GVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALE 267

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF+ +  RD F W++MI GF ++G G EA+  F++M EA V+PN++ F  +LC CSH GL
Sbjct: 268 VFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGL 326

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EG  FF+QM   + V PG+KHY C+VDM GRAG L++A+E I   P      +W  LL
Sbjct: 327 VEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILL 386

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            + KIH+NV + E A  +L +L   N G  VLL+ IYA       V+ +RK ++  G+K 
Sbjct: 387 SSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKT 446

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH-LLQLVEEE 577
            PG S IEV+ ++H+F+  + SHP  + IY KL+E+  +    GYV ++S  +      E
Sbjct: 447 TPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSE 506

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           +  E +   HSE+LAIA+GL        +RIVKNLRVC DCH   K +S+ +NR+I++RD
Sbjct: 507 ECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRD 566

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF+GG CSC DYW
Sbjct: 567 RLRFHHFKGGLCSCRDYW 584


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/658 (39%), Positives = 381/658 (57%), Gaps = 30/658 (4%)

Query: 25  PTTLTVNNGHQHHPHPVFSLI-----KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP 79
           PT +T  N  +   + +F+       + CKN++ L QIH   +++G+  D Y   KL   
Sbjct: 154 PTVITQTNQRRRRMNALFAWKITRKDQYCKNLRALTQIHGFFIKSGVDTDSYFIGKLILH 213

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           CA+    +L YAR +    P+P+ + +NTL+R YS S EP  S  +F++++     FP+ 
Sbjct: 214 CAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDS 273

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           F+F FV+KAAA     R G  +H   +K   +  LF++ +LI  Y  CG +  A  VF  
Sbjct: 274 FSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDE 333

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA----CAKKRD 255
           + + ++V+WN++++   +G     A E++ +M + N     V +   + A    CAK+  
Sbjct: 334 MPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIF 393

Query: 256 LEFGR-----WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
            E        W             NE+ S F EL L   + P+E +   VLSAC+Q GA 
Sbjct: 394 SEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL-LRAEMRPNEVSLTGVLSACSQSGAF 452

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAG 357
           + G  +H  ++K G      +  +LIDMY++CGN+  A  VF  ++  R +  W++MIAG
Sbjct: 453 EFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAG 512

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
            AM+G G EA+ +F+ M E+ V P+ ++F ++L ACSH+GL+ EG  +F++M+ VY + P
Sbjct: 513 LAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEP 572

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
            V+HY CMVD+ GR+G L +A  FI +MPI P A VW  LLGAC  H N+ELAE     L
Sbjct: 573 AVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 632

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
            EL+P N G LVLLSN+YA  GKW +V+ +RK M V  +KK    S +EV   ++KF A 
Sbjct: 633 NELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTAC 692

Query: 538 ESSHPLCKEIYSKLDEIVARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           E    +  E + KL EI+ RL+   GY P  +  L  VEEE+ ++Q ++ HSE+LA+A+ 
Sbjct: 693 EKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQ-VSKHSEKLALAFA 751

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           L  +     IRIVKNLR+C DCH V KL S++Y  EI++RDR RFH F+ G+CSC DY
Sbjct: 752 LARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 256/618 (41%), Positives = 374/618 (60%), Gaps = 47/618 (7%)

Query: 40  PVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           P++ S+I     +K L+QIH +++ TGL       +KL +  A    S + Y R +F  I
Sbjct: 20  PIYHSIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLS-FAYAAASPISYTRRLFFSI 78

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+P+ + +++LI   S  + P +S + + +++  +    N +TF  VIK++A L  F +G
Sbjct: 79  PKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSN-YTFSAVIKSSADLTAFSIG 137

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH  V    +  D ++  +L+ FYA  G + +A  VF  + +K VV+WNSMISG+ Q 
Sbjct: 138 ETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           GF ++A+EL+  M                      +DL                     V
Sbjct: 198 GFGKEAVELFFLM----------------------QDL--------------------GV 215

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TFVS+LSACAQ+GA+ +G  +H  + +    LN  L T+L++MY++CGN+ KA E
Sbjct: 216 KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKARE 275

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF +++ +++  W+ MI+G+ M+G G +A++LF+ M     +PN VTF  VL AC+H+GL
Sbjct: 276 VFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGL 335

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457
           VDEGR  F  M+  YG+VP V+H  CMVDMLGRAG L+EA +FI+   P  P  +VW A+
Sbjct: 336 VDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAM 395

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK+H+N +L      HLL +EPEN G  V+LSNIYA  G+ D V ++R  M  + LK
Sbjct: 396 LGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLK 455

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KE G S+I+V+ +++ F  G+ SHP   +IY  LDE+++R +  GY+P    ++  VEEE
Sbjct: 456 KEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEE 515

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             +E AL  HSE+LAIA+GL+       IRIVKNLR+C DCHT  K IS + NREI +RD
Sbjct: 516 -EREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRD 574

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF+ G+CSC DYW
Sbjct: 575 RLRFHHFKDGSCSCQDYW 592


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/566 (43%), Positives = 355/566 (62%), Gaps = 22/566 (3%)

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           Q+P+ ++   + LIRA S SA P  +  ++  L+  +   P   T P ++K+ A L    
Sbjct: 32  QLPR-SVELHDALIRALSRSARPHLALPLYAHLL-RAGLLPTPHTLPSLLKSMA-LSPAV 88

Query: 157 VGQAI-----HGMVIKSSFEDDLFISNSLIHFYA-ICGDLAMAYCVFVMIGKKDVVSWNS 210
            G A+     H   +K   +  + +SN+LI  +A   G LA    +       D  ++N+
Sbjct: 89  PGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNT 148

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I+ + + G    A  L+ EM   N     V+  A+++   +  D   GR   EAL IF 
Sbjct: 149 LITAYARAGRLADARALFDEMPARNA----VSWSAMVNGYVQAGD---GR---EALRIFA 198

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            +Q +++V PD+   V VL+ACAQ GA++ G  +H  +K  GIK+N +  T+L+DMY+KC
Sbjct: 199 RMQ-AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKC 257

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A++VF  ++ ++V  W+TMI G AM+G G EA+ LF++M+ + ++P+ + F  VL
Sbjct: 258 GEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVL 317

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           CAC+H+GLVD+GR  F+ M   YG+ P ++HY CMVD+L R G L EA E I+KMP+ P 
Sbjct: 318 CACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPD 377

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
           A +WGAL+  C+ H+NVE AEY   H + LEP+  GA VLLSNIYA +G+  +  E+R  
Sbjct: 378 ALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHL 437

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSH 569
           MR  G+ K PGCS++EVNG IH+F+ G+ SHP  K+I SK  EI  R++   GY+P+   
Sbjct: 438 MREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKE 497

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  +EEE+ +E AL+ HSE+LAIA+ LIS+  + PIRI KNLRVC DCH V KLISK+Y
Sbjct: 498 VLLDIEEEE-KEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVY 556

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            REI++RDR RFH F+ G CSC DYW
Sbjct: 557 GREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 3/200 (1%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           +LRT    D  + + L T  A      L  AR +FD++P  N  +W+ ++  Y  + +  
Sbjct: 134 LLRTAAAVDASTFNTLIT--AYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGR 191

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++  IF ++       P++     V+ A A+      G+ +HG +     + +LF   +L
Sbjct: 192 EALRIFARM-QAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTAL 250

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  Y+ CG++ +A  VF  +  K+V++W +MI G    G   +A+ L+ +ME   ++PD+
Sbjct: 251 VDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDD 310

Query: 241 VTMVAVLSACAKKRDLEFGR 260
           +  + VL AC     ++ GR
Sbjct: 311 IAFIGVLCACTHAGLVDKGR 330


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 367/641 (57%), Gaps = 48/641 (7%)

Query: 16  VISLPRHP-NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS 74
           ++SLP  P   + L      Q       SL+K+CK++++ K++H  +L+ GLF+D +  S
Sbjct: 12  LLSLPNSPLQSSELNAKFNEQ----GWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGS 67

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
            L   CAL  + S+EYA  +F QI +P  + +NT+IR   +S +  ++ +++++++    
Sbjct: 68  NLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEML-ERG 126

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
             P+ FT+PFV+KA + LV  + G  IH  V  +  E D+F+ N LI  Y  CG +  A 
Sbjct: 127 IEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAG 186

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            VF  + +K V SW+S+I           ++E++                          
Sbjct: 187 VVFEQMDEKSVASWSSIIGA-------HASVEMW-------------------------- 213

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                   +E L +  ++        +E   VS LSAC  LG+ ++G  IH  + +   +
Sbjct: 214 --------HECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISE 265

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
           LN  + TSLIDMY KCG+L+K L VF  +  ++ + ++ MIAG A++G GREAL +FS M
Sbjct: 266 LNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDM 325

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
            E  + P+ V +  VL ACSH+GLV EG   FN+M+  + + P ++HY CMVD++GRAG+
Sbjct: 326 LEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGM 385

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L EA + I+ MPI P   VW +LL ACK+H N+E+ E A  ++ +L   N G  ++L+N+
Sbjct: 386 LKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANM 445

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA+  KW NV+ +R  M    L + PG S +E N  ++KF++ + S P C+ IY  + ++
Sbjct: 446 YARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQM 505

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             +LK  GY P+ S +L L  +ED + Q L  HS++LAIA+ LI      P+RI +NLR+
Sbjct: 506 EWQLKFEGYTPDMSQVL-LDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRM 564

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCHT  K IS +Y REI +RD  RFHHF+ G CSC DYW
Sbjct: 565 CNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/683 (36%), Positives = 383/683 (56%), Gaps = 79/683 (11%)

Query: 43  SLIKQC-----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           S +K+C     K++ Q KQ H  +LR GL  D Y  + L        F++ +YA  +F Q
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSL--HFAATQYATVVFAQ 60

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-FR 156
            P PN++ +NTLIR   S+     +  ++  +  +  + P+ FTFPFV+KA  RL   F 
Sbjct: 61  TPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHG-FAPDNFTFPFVLKACTRLPHYFH 119

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           VG ++H +VIK+ F+ D+F+   L+  Y+  G L  A  VF  I +K+VVSW ++I G++
Sbjct: 120 VGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN------------- 263
           + G F +A+ L+R +    ++PD  T+V +L AC++  DL  GRW +             
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVF 239

Query: 264 ----------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                           EA  +F  +     V  D   + +++   A  G     + +  +
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGM-----VEKDVVCWSALIQGYASNGMPKEALDVFFE 294

Query: 308 MKKQGIKLNCY-----------------------------------LTTSLIDMYTKCGN 332
           M+++ ++ +CY                                   L T+LID Y KCG+
Sbjct: 295 MQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGS 354

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + +A EVF  ++ +D  V++ +I+G AM G    A  +F +M +  ++P+  TF  +LC 
Sbjct: 355 VAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCG 414

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+H+GLVD+G  +F+ M  V+ V P ++HY CMVD+  RAGLL EA + I  MP+   + 
Sbjct: 415 CTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSI 474

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VWGALLG C++H++ +LAE+    L+ELEP N G  VLLSNIY+ + +WD   ++R  + 
Sbjct: 475 VWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLN 534

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             G++K PGCS +EV+G +H+FL G++SHPL  +IY KL+ +   L+  GY P    +L 
Sbjct: 535 QKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLF 594

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            VEEE+ +E  L  HSE+LA+A+ LIS      IR+VKNLRVCGDCH   KL+SK+  RE
Sbjct: 595 DVEEEE-KEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGRE 653

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD  RFHHF  G+CSC DYW
Sbjct: 654 IIVRDNNRFHHFTEGSCSCRDYW 676


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/622 (37%), Positives = 370/622 (59%), Gaps = 25/622 (4%)

Query: 41   VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
            + +L    +N  Q +QIH  ++R  +  +    ++L   ++ C       L YA+E+F++
Sbjct: 485  LLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG-----RLNYAKEIFNR 539

Query: 98   IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
            + + N Y+WN++I  Y  + E  ++  +F Q+  N    P+ F+   ++ +   L   + 
Sbjct: 540  MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK-PDCFSLSSMLSSCVSLSDSQK 598

Query: 158  GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            G+ +H  +++++ E++  +   L+  YA CG +  A+ V+    KKDV+  N M+S FV 
Sbjct: 599  GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658

Query: 218  GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
             G    A  L+ +ME  N       +    +   KK          E+ + F E+ L  +
Sbjct: 659  SGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKK----------ESFNHFLEM-LESD 707

Query: 278  VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC--YLTTSLIDMYTKCGNLDK 335
            +  D  T V++++ C+ L A++ G Q+H+ + K+G  +NC   L T+L+DMY+KCG + K
Sbjct: 708  IEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGF-VNCSVVLETALVDMYSKCGAITK 766

Query: 336  ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            A  VF  +  +++  W+ MI+G++ +GC +EAL L+  M +  + PN VTF  +L ACSH
Sbjct: 767  ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 826

Query: 396  SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            +GLV+EG   F  M+  Y +    +HYTCMVD+LGRAG L++A EF+EKMPI P  S WG
Sbjct: 827  TGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 886

Query: 456  ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            ALLGAC++H+++++   A   L EL+P+N G  V++SNIYA  G+W  V ++R+ M++ G
Sbjct: 887  ALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKG 946

Query: 516  LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
            +KK+PG S IE+N EI  F AG  +HP  +EIY+ L  +  + K  GY+P+ S +LQ V+
Sbjct: 947  VKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVK 1006

Query: 576  EEDVQEQALNL--HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
            +   +E+   L  HSERLA++ GLIS+     IR+ KNLR+CGDCHT  K ISK+  R I
Sbjct: 1007 DIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRI 1066

Query: 634  LLRDRYRFHHFRGGNCSCMDYW 655
            + RD  RFHHF  G CSC DYW
Sbjct: 1067 IARDTNRFHHFENGKCSCGDYW 1088



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 227/508 (44%), Gaps = 77/508 (15%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL 76
           P  P PT++        +P P  SLI+ C    + ++ K IHTQM+  G   D Y  +K+
Sbjct: 53  PDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKI 112

Query: 77  FTPCAL-GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
               A  G    L YAR++F+++P+ NL  WNT+I AY+   + ++   ++ ++   S  
Sbjct: 113 LMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRM-RGSGN 171

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
           F ++FTFP VIKA   +      + +   V+K+    +LF+  +L+  YA  G +  A  
Sbjct: 172 FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVT 231

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
               I    VV+WN++I+G+V+   +E+A  ++  M    V PD  T  + L  C   R 
Sbjct: 232 SLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS 291

Query: 256 LEFGRW-----------------------------PNEALSIFHELQLSKNVNPDEFTFV 286
            + G+                                  L +F E+        ++ T+ 
Sbjct: 292 RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-----ERNQVTWN 346

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY---------------------------- 318
           S++SA AQ G  +  + +  +M++ G K N +                            
Sbjct: 347 SIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 319 -------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                  L ++L+DMY+KCG +++A +VF ++  R+   ++ ++AG+   G   EAL+L+
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 372 SRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             MQ E  ++P+  TFT +L  C++    ++GR     +     +   +   T +V M  
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYS 525

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALL 458
             G L+ A E   +M     A  W +++
Sbjct: 526 ECGRLNYAKEIFNRMA-ERNAYSWNSMI 552



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 188/384 (48%), Gaps = 45/384 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           KQ+H++++  G   D +  + L    A       E   ++FD++ + N  TWN++I A +
Sbjct: 296 KQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWNSIISAEA 353

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
                  + ++FL++   S Y  N F    ++ A+A L     G+ +HG ++++    D+
Sbjct: 354 QFGHFNDALVLFLRM-QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDI 412

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + ++L+  Y+ CG +  A+ VF  + +++ VS+N++++G+VQ G  E            
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAE------------ 460

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                        EAL ++H++Q    + PD+FTF ++L+ CA 
Sbjct: 461 -----------------------------EALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
               + G QIHA + +  I  N  + T L+ MY++CG L+ A E+F+ +  R+ + W++M
Sbjct: 492 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 551

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G+   G  +EAL LF +MQ   +KP+  + +++L +C       +GR   N +     
Sbjct: 552 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM 611

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEA 438
              G+     +VDM  + G +D A
Sbjct: 612 EEEGILQ-VVLVDMYAKCGSMDYA 634


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/703 (36%), Positives = 394/703 (56%), Gaps = 87/703 (12%)

Query: 34  HQHHPHPVFSL----------IKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCAL 82
           H  H H V +L          ++ C ++  LK IH+ +   G L   P+  ++L      
Sbjct: 11  HLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLII--LY 68

Query: 83  GTFSSLEYAREMFDQ--------IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
                L  AR +FD            PN +  NT++RAY+++    ++  +++ +     
Sbjct: 69  SKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM-QRMG 127

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
              N FT+PFV+K  A  +    G+ +HG V+++ F  DLF+  +L+  YA CG++  A+
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT------------ 242
            VF  +  +DVV W +MI+ + Q     KA+ L+R+M+ E    DE+T            
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247

Query: 243 --------------------------MVAVLSACA--KKRDLEFGR--------W----- 261
                                     +V + + C   ++  L F R        W     
Sbjct: 248 DGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLS 307

Query: 262 -------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                  P +ALS+F+++Q S+  +P+  T + ++SAC+ LG+  +G ++H  +    + 
Sbjct: 308 GYTQNGRPTDALSLFNQMQASE-CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMD 366

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFS 372
           ++  L  +++DMY KCG+LD A+E+F+  +   RDV  W+ +I+G+ ++G G+EAL+LFS
Sbjct: 367 IDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFS 426

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           RMQ   V+PN +TFT++L ACSH+GL+DEGR  F  M  +  V P +KHY CMVDMLGRA
Sbjct: 427 RMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRA 485

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
           G L+EA   I+K+P  P   VWGALL AC+IH N EL E A ++L +LEPE+ G  VL+S
Sbjct: 486 GFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMS 545

Query: 493 NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
           NIYA + KW  V  +R++M+  GLKK    S IE   E+H F   + S P  +E+Y K++
Sbjct: 546 NIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVE 605

Query: 553 EIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNL 612
            +   +K  GYVP+ S +L  VE ED +E  LN HSE+LA+A+G++ ++   PI++ KNL
Sbjct: 606 SLAIEMKMVGYVPDLSCVLHDVEPED-KEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNL 664

Query: 613 RVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           RVC DCH   K IS +Y R+I++RD  RFHHF+GG CSC DYW
Sbjct: 665 RVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/661 (38%), Positives = 375/661 (56%), Gaps = 79/661 (11%)

Query: 30  VNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA----- 81
           V+ GH  + +    L+K C   K  ++ +QIH Q+++ G   D Y+ + L +  A     
Sbjct: 75  VSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRL 134

Query: 82  ------------------------LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSA 117
                                     +   +  AR++FD I + ++ +WN +I  Y  + 
Sbjct: 135 EDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENC 194

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFI 176
              ++  +F +++  +   P+E T   V+ A A+     +G+ IH +V     F   L I
Sbjct: 195 GYEEALELFKEMM-RTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKI 253

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N+ I  Y+ CGD+ +A  +F  +  KDVVSWN++I G+         + LY+E      
Sbjct: 254 VNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH-------MNLYKE------ 300

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                                       AL +F E+ L    +P++ T +SVL ACA LG
Sbjct: 301 ----------------------------ALLLFQEM-LRSGESPNDVTMLSVLPACAHLG 331

Query: 297 AMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           A+DIG  IH  + K  +G+     L TSLIDMY KCG+++ A +VF+++  + +  W+ M
Sbjct: 332 AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAM 391

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I GFAM+G    A DLFSRM++  ++P+ +T   +L ACSHSGL+D GR  F  +   Y 
Sbjct: 392 IFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN 451

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++HY CM+D+LG AGL  EA E I  MP+ P   +W +LL ACK+H N+ELAE   
Sbjct: 452 ITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFA 511

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             L+E+EPEN G+ VLLSNIYA  G+W++V+ +R+ +   G+KK PGCSSIE++  +H+F
Sbjct: 512 QKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEF 571

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           + G+  HP  +EIY  L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA
Sbjct: 572 IIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIA 630

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLIS +P   + +VKNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DY
Sbjct: 631 FGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDY 690

Query: 655 W 655
           W
Sbjct: 691 W 691



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 226/471 (47%), Gaps = 80/471 (16%)

Query: 58  HTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           H QM++TGL    Y+ SKL   C +   F  L YA  +F+   +PNL  WNT++R  +SS
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
           ++ +    +++++V +  + PN +TFPF++K+ A+   F  G+ IH  V+K   E D + 
Sbjct: 62  SDLVSPLEMYVRMV-SXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 177 SNSLIHFYA---------------------IC----------GDLAMAYCVFVMIGKKDV 205
             SLI  YA                      C          GD+  A  VF  I ++DV
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWN+MI+G+V+   +E+A+EL++EM   NV+PDE T+V+VLSACA+   +E GR     
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGR----- 235

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNCYLTTSLI 324
                                                +IH  +    G   +  +  + I
Sbjct: 236 -------------------------------------EIHTLVDDHHGFGSSLKIVNAFI 258

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            +Y+KCG+++ A  +F  +  +DV  W+T+I G+      +EAL LF  M  +   PN V
Sbjct: 259 GLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 318

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           T  +VL AC+H G +D GR     ++  + GV  G    T ++DM  + G ++ A +   
Sbjct: 319 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFN 378

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLE--LEPENHGALVLLS 492
            M +    S W A++    +H     A    S + +  +EP++   + LLS
Sbjct: 379 SM-MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLS 428


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/634 (39%), Positives = 371/634 (58%), Gaps = 50/634 (7%)

Query: 27  TLTVNNGHQHHPH-PVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCAL 82
            LT++NG +      V SL+  C       +   IH+  ++ GL  + + ++KL    A 
Sbjct: 235 ALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA- 293

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
             F  L   +++FD++   +L +WN++I+AY  + +P+++  +F ++   S   P+  T 
Sbjct: 294 -EFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRL-SRIQPDCLTL 351

Query: 143 PFVIKAAARLVQFRVGQAIHGMVI-KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
             +    ++L   R  +++ G  + K  F +D+ I N+++  YA  G +  A  VF  + 
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             DV+SWN++ISG+ Q GF  +AIE+Y  ME E                           
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG-------------------------- 445

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                           +  ++ T+VSVL AC+Q GA+  G+++H ++ K G+ L+ ++ T
Sbjct: 446 ---------------EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 490

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SL DMY KCG L+ AL +F+ +   +   W+T+IA    +G G +A+ LF  M +  VKP
Sbjct: 491 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 550

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + +TF  +L ACSHSGLVDEG+  F  M+  YG+ P +KHY CMVDM GRAG L+ A++F
Sbjct: 551 DHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF 610

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+ M + P AS+WGALL AC++H NV+L + A  HL E+EPE+ G  VLLSN+YA  GKW
Sbjct: 611 IKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           + V E+R      GL+K PG SS+EV+ ++  F  G  +HP+ +E+Y +L  + A+LK  
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP+   +LQ V E+D +E  L  HSERLAIA+ LI+      IRI KNLRVCGDCH+V
Sbjct: 731 GYVPDHRFVLQDV-EDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSV 789

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 790 TKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 248/530 (46%), Gaps = 84/530 (15%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLE 89
           N         V +L + C N++  K +H +++ +    +   ++KL    C LG   ++ 
Sbjct: 47  NGNESKEIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLG---NVA 103

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYS---SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            AR  FD I   ++Y WN +I  Y    +S+E I+ F +F+    +S   P+  TFP V+
Sbjct: 104 LARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM---LSSGLTPDYRTFPSVL 160

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           KA   ++    G  IH + +K  F  D++++ SLIH Y+    +  A  +F  +  +D+ 
Sbjct: 161 KACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL---------- 256
           SWN+MISG+ Q G  ++A+ L   +       D VT+V++LSAC +  D           
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 257 --------------------EFGR------------------W------------PNEAL 266
                               EFGR                  W            P  A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLID 325
           S+F E++LS+ + PD  T +S+ S  +QLG +     +     ++G  L +  +  +++ 
Sbjct: 334 SLFQEMRLSR-IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAV 384
           MY K G +D A  VF+ + + DV  W+T+I+G+A  G   EA+++++ M +E ++  N  
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+ +VL ACS +G + +G     ++    G+   V   T + DM G+ G L++A+    +
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQ 511

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLE--LEPENHGALVLLS 492
           +P V     W  L+     H + E A      +L+  ++P++   + LLS
Sbjct: 512 IPRVNSVP-WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/637 (39%), Positives = 366/637 (57%), Gaps = 71/637 (11%)

Query: 35  QHHPH-------------PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           QHHPH             P          ++Q KQIH  +++T                 
Sbjct: 62  QHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHFH-------------- 107

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                +L+     F     P+   WN +I +Y+   +P  +  ++ QL     +  + F 
Sbjct: 108 ----HALQIPLNDFPSGLSPS-AQWNFVITSYTKRNQPRNALNVYAQL-RKMDFEVDNFM 161

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
            P V+KA  ++   ++G+ IHG V+K   + D+F+ N+L+  Y  C  +  A  VF  + 
Sbjct: 162 APSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMM 221

Query: 202 KKDVVSW----NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
           ++DVVSW     +++  + + G    A +L+  +  + V    V+  A+++ C +   LE
Sbjct: 222 ERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLE 277

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                 E   +F  +Q  +N+ P+E T ++                      K+ ++++C
Sbjct: 278 ------EGTKLFIRMQ-EENIFPNEITMLN----------------------KERVEVDC 308

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            L T+L+DMY KCG+++ A  +F    SRD+ +W+ +I GFAM+G G EALD+F+ M+  
Sbjct: 309 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 368

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            VKPN +TF  +L ACSH+GLV EG+  F +M   +G+VP ++HY CMVD+LGRAGLLDE
Sbjct: 369 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 428

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A E I+ MPI P   VWGAL+ AC++H+N +L E A + LLE+EPEN G  VL+SNIYA 
Sbjct: 429 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAA 488

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
             +W + + +RK M+  G+KKEPG S IEVNG +H+FL G+ SHP  + I   L E+  +
Sbjct: 489 ANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRK 548

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           L   GYVP+ S +L  ++EE+ +E AL  HSE+LA+A+GLIS  PS PIRIVKNLRVC D
Sbjct: 549 LNEAGYVPDTSTVLLNIDEEE-KETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCND 607

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           CH   KL+SK+Y R I++RDR RFHHFR G CSC DY
Sbjct: 608 CHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/572 (41%), Positives = 347/572 (60%), Gaps = 17/572 (2%)

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
           +   L+Y+  +F +   P+++ W  +I  ++      Q+   + Q++      PN FTF 
Sbjct: 21  SLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE-PNAFTFS 79

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            ++K    L     G+A+H   +K  F+ DL++   L+  YA  GD+  A  +F  + +K
Sbjct: 80  SILK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEK 135

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            +VS  +M++ + + G  + A  L+  ME    + D V    ++    +         PN
Sbjct: 136 SLVSLTAMLTCYAKHGELDAARVLFDGME----ERDGVCWNVMIDGYTQNG------MPN 185

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL +F  + L     P+E T +SVLSAC QLGA++ G  +H+ ++  GI+ N ++ T+L
Sbjct: 186 EALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 244

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMY+KCG+L+ A  VF  +  +DV  W++MI G+AM G  +EAL LF  M    + P  
Sbjct: 245 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +TF  +L AC HSG V EG   FN+M+  YG+ P ++HY CMV++LGRAG +++A E ++
Sbjct: 305 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 364

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            M I P   +WG LLGAC++H  + L E     L++    N G  +LLSNIYA  G WD 
Sbjct: 365 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDG 424

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V+ LR  M+ SG+KKEPGCSSIEVN ++H+FLAG  +HP  KEIY  L+EI   LKS GY
Sbjct: 425 VARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGY 484

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
            P    +L  + E + +E++L +HSE+LAIA+GLI+ +P   I+IVKNLRVC DCH V K
Sbjct: 485 TPQTDIVLHDIGETE-KERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTK 543

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LISK+  R+I++RDR RFHHF  G+CSC DYW
Sbjct: 544 LISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 16/268 (5%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           + L   YA  G L  +  +F       V  W ++I G    G  E+A+  Y +M  + V+
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
           P+  T  ++L  C           P E     H   +    + D +    +L   A+ G 
Sbjct: 73  PNAFTFSSILKLC-----------PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +    Q+   M ++ +       T+++  Y K G LD A  +F  ++ RD   W+ MI G
Sbjct: 122 VVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 177

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G   EAL LF RM +AK KPN VT  +VL AC   G ++ GR   + +E   G+  
Sbjct: 178 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN-NGIQF 236

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            V   T +VDM  + G L++A    +K+
Sbjct: 237 NVHVGTALVDMYSKCGSLEDARLVFDKI 264



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y   G LD ++ +F   ++  VF W+ +I G A+ G   +AL+ +++M    V+PNA TF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +++L  C     ++ G+   +Q   + G    +   T ++D+  R G +  A +  + MP
Sbjct: 79  SSILKLCP----IEPGKALHSQAVKL-GFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 53/280 (18%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           V S++  C  +  L   + +H+ +   G+ F+ +  + L   ++ C      SLE AR +
Sbjct: 206 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG-----SLEDARLV 260

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD+I   ++  WN++I  Y+      ++  +F  +     + P   TF  ++ A      
Sbjct: 261 FDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLH-PTNITFIGILSACG---- 315

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G    G  I +  +D+  I   + H+           C+  ++G+            
Sbjct: 316 -HSGWVTEGWDIFNKMKDEYGIEPKIEHY----------GCMVNLLGR------------ 352

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
               G  E+A EL + M   N++PD V    +L AC     +  G           EL +
Sbjct: 353 ---AGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGE-------KIVELLV 399

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
            +N+  +  T++ + +  A +G  D   ++   MK  G+K
Sbjct: 400 DQNL-ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 438


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/657 (38%), Positives = 364/657 (55%), Gaps = 78/657 (11%)

Query: 33  GHQHHPHPVFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL------------- 76
           G Q + H    L K C   K   + KQ+H   L+  L F+P+  + +             
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFA 185

Query: 77  --------------FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
                         FT    G  S   L+ AR +FD+IP  ++ +WN +I  Y  S    
Sbjct: 186 RLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE 245

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++ + F ++   +   PN+ T   V+ A        +G+ I   V  + F  +L ++N+L
Sbjct: 246 EAIVCFYEM-QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNAL 304

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           I  Y  CG+  +A  +F  I +KDV+SWN+MI G+     +E+A+ L+            
Sbjct: 305 IDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALF------------ 352

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                                         E+ L  NV P++ TF+ +L ACA LGA+D+
Sbjct: 353 ------------------------------EVMLRSNVKPNDVTFLGILHACACLGALDL 382

Query: 301 GVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
           G  +HA + K      N  L TSLIDMY KCG ++ A  VF ++ SR++  W+ M++GFA
Sbjct: 383 GKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFA 442

Query: 360 MYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           M+G    AL LFS M  +   +P+ +TF  VL AC+ +GLVD G  +F  M   YG+ P 
Sbjct: 443 MHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPK 502

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           ++HY CM+D+L RA   +EA   ++ M + P  ++WG+LL ACK H  VE  EY    L 
Sbjct: 503 LQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLF 562

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           +LEPEN GA VLLSNIYA  G+WD+V+ +R  +   G+KK PGC+SIE++G++H+FL G+
Sbjct: 563 QLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGD 622

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
             HP C  IY  L+E+   L+  G+VPN S +L  ++EE  +E AL+ HSE+LAI++GLI
Sbjct: 623 KFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEE-WKEGALSQHSEKLAISFGLI 681

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             +P   IRIVKNLRVCG+CH+  KLISK++NREI+ RDR RFHHF+ G CSC D W
Sbjct: 682 KTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 229/435 (52%), Gaps = 16/435 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  +L+++CKNI   KQIH+ +++TGL    +  SKL   CA+     L YA  +F++ 
Sbjct: 29  HPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEEN 88

Query: 99  PQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            Q    N++ WN+LIR YS S+ P+ S  +F +++Y     PN  TFPF+ K+  +    
Sbjct: 89  QQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQ-PNSHTFPFLFKSCTKAKAT 147

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ +H   +K +   +  +  S+IH YA  G++  A  VF     +D VS+ ++I+G+
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V  G  + A  L+ E+ +++V    V+  A++S   +    E      EA+  F+E+Q  
Sbjct: 208 VSQGCLDDARRLFDEIPVKDV----VSWNAMISGYVQSGRFE------EAIVCFYEMQ-E 256

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            NV P++ T V VLSAC    + ++G  I + ++  G   N  LT +LIDMY KCG  D 
Sbjct: 257 ANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDI 316

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A E+F  ++ +DV  W+TMI G++      EAL LF  M  + VKPN VTF  +L AC+ 
Sbjct: 317 ARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACAC 376

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G +D G+     ++           +T ++DM  + G ++ A      M     AS W 
Sbjct: 377 LGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WN 435

Query: 456 ALLGACKIHENVELA 470
           A+L    +H + E A
Sbjct: 436 AMLSGFAMHGHAERA 450


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 380/625 (60%), Gaps = 32/625 (5%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFD 96
           L+  C  +  L+   ++H+ +++ G        S LF   AL      F +L  AR +FD
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGF------ESDLFVRNALIHLYSVFGNLNLARTLFD 170

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +    +L ++NT+I+ Y+   +P  +  +F ++  NS   P+EFTF  +    + L +  
Sbjct: 171 ESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM-QNSGILPDEFTFVALFSVCSVLNEPN 229

Query: 157 VGQAIHGMVIKS--SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMIS 213
           VG+ IH  V K+  S + ++ + ++++  YA CG + +A  VF  +G  K   +W+SM+ 
Sbjct: 230 VGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVC 289

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ + G    A +L+  M     + D ++  A++S  ++          +EAL +F E++
Sbjct: 290 GYARCGEINVARKLFNHMH----ERDVISWTAMISGYSQAGQC------SEALELFKEME 339

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI-KLNCYLTTSLIDMYTKCGN 332
            +  + PDE T V+VLSACA+LGA D+G +++ +  + G+   N  LT +++DMY KCG+
Sbjct: 340 -ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGS 398

Query: 333 LDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           +D ALE+F  V    +  FV+++MIAG A +G G  A+ +F  +    +KP+ VTF  VL
Sbjct: 399 IDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVL 458

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           CAC HSGL++EG+  F  M   YG+ P ++HY CMVD+LGR G L+EA + ++KMP    
Sbjct: 459 CACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEAN 518

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
           + +W ALL AC+ H NV++ E A   LLE+E ++    VLLSNI A   +W+   ++RK 
Sbjct: 519 SVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKV 578

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G++K PG S IE+ G IH+F+A + SHP  KEI   L ++  RLKS GYVPN + +
Sbjct: 579 MEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQV 638

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           +  ++EE+ +E  ++ HSE+LA+A+GL+   P+  IRIVKNLR+C DCH   KL+S++Y 
Sbjct: 639 MFDIDEEE-KESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYG 697

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI +RD  RFHHFR G+CSCMD+W
Sbjct: 698 REITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 222/403 (55%), Gaps = 9/403 (2%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQIPQPN 102
           L++ CK+ KQ  QIH Q +  GL    +S S+L +  +L G+   L+++R +F QI  PN
Sbjct: 15  LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN 74

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           L+ WNT+IR YS S  P ++ ++++ ++      PN FTFPF++ + ARL     G  +H
Sbjct: 75  LFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +IK  FE DLF+ N+LIH Y++ G+L +A  +F     +D+VS+N+MI G+ +    E
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A+ L+ EM+   + PDE T VA+ S C+   +   G+  +    ++  L   ++++ + 
Sbjct: 195 SALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHA--QVYKNL---RSIDSNI 249

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
               +++   A+ G ++I  ++ + M   G   +    +S++  Y +CG ++ A ++F+ 
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTM---GTSKSAAAWSSMVCGYARCGEINVARKLFNH 306

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +  RDV  W+ MI+G++  G   EAL+LF  M+   +KP+ VT   VL AC+  G  D G
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG 366

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  ++Q                ++DM  + G +D A+E   ++
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 355/605 (58%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +KQ +QIH ++++ G   D    + L +  A     SL  AR +F++I + N+  WN +I
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTALLSMYA--KCGSLMDARNVFERISKQNVVAWNAMI 480

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            AY    +   +   F Q +      P+  TF  ++          +G+ +  ++I++ F
Sbjct: 481 TAYVQHEKYDNAVATF-QALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF 539

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E DL I N+L+  +  CGDL  A  +F  + ++D+VSWN++I+GFVQ G  + A + ++ 
Sbjct: 540 ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKM 599

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M+   VKPD++T   +L+ACA    L  GR                              
Sbjct: 600 MQESGVKPDQITFTGLLNACASPEALTEGR------------------------------ 629

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
                       ++HA + +  +  +  + T LI MYTKCG++D A  VFH +  ++V+ 
Sbjct: 630 ------------RLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYS 677

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++MI G+A +G G+EAL+LF +MQ+  VKP+ +TF   L AC+H+GL+ EG   F  M+
Sbjct: 678 WTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK 737

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+ GRAGLL EAVEFI KM + P + +WGALLGAC++H +VELA
Sbjct: 738 D-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELA 796

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E      LEL+P + G  V+LSNIYA  G W  V+++RK M   G+ K+PG S IEV+G 
Sbjct: 797 EKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGR 856

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H F + + +HP  +EI+++L  +   +K  GYVP+  ++L  VE+ + +E AL  HSER
Sbjct: 857 VHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSE-KEHALCHHSER 915

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIAYGL+   P  PI I KNLRVCGDCHT  KLISK+  R+I+ RD  RFHHF+ G CS
Sbjct: 916 LAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCS 975

Query: 651 CMDYW 655
           C D+W
Sbjct: 976 CGDFW 980



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 238/502 (47%), Gaps = 74/502 (14%)

Query: 66  LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           +  + +   +L+T    G++S  +   E  D     N    N  +   S + +  ++ ++
Sbjct: 36  VILEEFDTFRLYTTSFSGSYSKGQ-GNEFVDI---KNTQRANAFLNRLSKAGQLSEAMLV 91

Query: 126 FLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
            L +  +SP+   +  T+  +++   +      G+ IH  +  S  + D+F+ N LI  Y
Sbjct: 92  LLSV--DSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMY 149

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           A CG+   A  +F  +  KDV SWN ++ G+VQ   +E+A  L+ +M  + VKPD+ T V
Sbjct: 150 AKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFV 209

Query: 245 AVLSACAKKRDLEFGR----------WP-------------------NEALSIFHEL--- 272
            +L+ACA  ++++ G           W                    ++AL +F+ L   
Sbjct: 210 YMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRR 269

Query: 273 ---------------------------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
                                         + V PD+  FVS+L AC    A++ G ++H
Sbjct: 270 DLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVH 329

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
           A+MK+ G+    Y+ T+L+ MYTKCG+++ ALEVF+ VK R+V  W+ MIAGFA +G   
Sbjct: 330 ARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRME 389

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           EA   F++M E+ ++PN VTF ++L ACS    + +GR   +++    G +   +  T +
Sbjct: 390 EAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA-GYITDDRVRTAL 448

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE--LEPE 483
           + M  + G L +A    E++        W A++ A   HE  + A      LL+  ++P+
Sbjct: 449 LSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPD 507

Query: 484 NHGALVLLSNIYA----KTGKW 501
           +     +L+   +    + GKW
Sbjct: 508 SSTFTSILNVCKSPDALELGKW 529



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 115/215 (53%), Gaps = 12/215 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++  CK+   L   K + + ++R G   D +  + L   F  C       L  A  +F+
Sbjct: 513 SILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCG-----DLMSAMNLFN 567

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P+ +L +WNT+I  +    E   +F  F +++  S   P++ TF  ++ A A      
Sbjct: 568 DMPERDLVSWNTIIAGFVQHGENQFAFDYF-KMMQESGVKPDQITFTGLLNACASPEALT 626

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +H ++ +++ + D+ +   LI  Y  CG +  A+ VF  + KK+V SW SMI+G+ 
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           Q G  ++A+EL+ +M+ E VKPD +T V  LSACA
Sbjct: 687 QHGRGKEALELFCQMQQEGVKPDWITFVGALSACA 721


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/644 (39%), Positives = 372/644 (57%), Gaps = 33/644 (5%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           H   SL+  CKN++ L QIH   ++ G+  D Y   KL   CA+    +L YAR +    
Sbjct: 6   HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+P+ + +NTL+R YS S EP  S  +F++++     FP+ F+F FVIKA       R G
Sbjct: 66  PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +H   +K   E  LF+  +LI  Y  CG +  A  VF  + + ++V+WN++I+   +G
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-----FGRWP----------- 262
                A E++ +M + N      +   +L+   K  +LE     F   P           
Sbjct: 186 NDVAGAREIFDKMLVRN----HTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMI 241

Query: 263 ---------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                    NE+   F ELQ +  ++P+E +   VLSAC+Q G+ + G  +H  ++K G 
Sbjct: 242 VGIAHNGSFNESFLYFRELQRA-GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY 300

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV-WSTMIAGFAMYGCGREALDLFS 372
                +  +LIDMY++CGN+  A  VF  ++ +   V W++MIAG AM+G G EA+ LF+
Sbjct: 301 SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFN 360

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
            M    V P+ ++F ++L ACSH+GL++EG  +F++M+ VY + P ++HY CMVD+ GR+
Sbjct: 361 EMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRS 420

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
           G L +A +FI +MPI P A VW  LLGAC  H N+ELAE     L EL+P N G LVLLS
Sbjct: 421 GKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480

Query: 493 NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
           N YA  GKW +V+ +RK M V  +KK    S +EV   ++KF AGE    +  E + KL 
Sbjct: 481 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLK 540

Query: 553 EIVARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           EI+ RLK   GY P  +  L  VEEE+ ++Q ++ HSE+LA+A+ L  +     IRIVKN
Sbjct: 541 EIILRLKDEAGYTPEVASALYDVEEEEKEDQ-VSKHSEKLALAFALARLSKGANIRIVKN 599

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LR+C DCH V KL SK+Y  EIL+RDR RFH F+ G+CSC DYW
Sbjct: 600 LRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/619 (39%), Positives = 360/619 (58%), Gaps = 49/619 (7%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           H  P   L+    +  +LKQ+H  +L+T         S++ + CA    SS  YA+ +F 
Sbjct: 14  HHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFN--SSFSYAKLIFQ 71

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +    +  WNT +R+++    P  +  +F +L       P+ +T  FV+KA +RL+  R
Sbjct: 72  LLDASEVTHWNTCLRSFAEGDSPADAISLFYRL-REFDISPDHYTCSFVLKACSRLLDVR 130

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG V K   + ++F+ N ++H YA+CG++ +A  VF  + ++DV++WN MI+  V
Sbjct: 131 NGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLV 190

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  E A +L+ EM   NV+    +M+   + C K +         EA+ +F E++   
Sbjct: 191 KMGDAEGAYKLFAEMPERNVR-SWTSMIGGYAQCGKSK---------EAIDLFLEME-DA 239

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P+E T V+VL ACA +G + +G +IH    + G + N  +  +LIDMY KCG L+ A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  ++ R V  WS MIAG A +G   +AL LF++M    VKPNAVTF  +L ACSH 
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           G+V++GR +F  M   YG+VP ++HY CMVD+  RAGLL EA EFI  MPI P   VWGA
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLG CK+H+NV+LAE A  HL +L+P N G  V+LSNIYA+ G+W++V+ +RK MR  G 
Sbjct: 420 LLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG- 478

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
                                              ++++ R+K  GYVPN S +L L  E
Sbjct: 479 ---------------------------------TWEKLLQRMKLKGYVPNTSVVL-LDME 504

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E+ L  HSE+LA+ +GLI   P   IRI+KNLRVC DCH   K+IS +  REI++R
Sbjct: 505 EDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVR 564

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFH F+ G+CSC DYW
Sbjct: 565 DRNRFHCFKNGSCSCGDYW 583


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 386/676 (57%), Gaps = 67/676 (9%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            L+++C  ++ L+Q   +H  +L++G+  + Y  + L +  A     SL  AR +FD I 
Sbjct: 52  GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA--KCGSLTDARRVFDSIR 109

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             N+ +W  +I A+ +  + +++F  + + +  +   P++ TF  ++ A       ++GQ
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCY-ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQ 168

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  ++++  E +  +  SL+  YA CGD++ A  +F  + +K+VV+W  +I+G+ Q G
Sbjct: 169 KVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQG 228

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------------WP-- 262
             + A+EL   M+   V P+++T  ++L  C     LE G+               W   
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVN 288

Query: 263 ------------NEALSIFHEL----------------QLS--------------KNVNP 280
                        EA  +F +L                QL               + + P
Sbjct: 289 SLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKP 348

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D+ TF SVL++C+    +  G +IH ++   G  L+ YL ++L+ MY KCG++D A  VF
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408

Query: 341 HTVKSRDVFVWSTMIAG-FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           + +  R+V  W+ +I G  A +G  REAL+ F +M++  +KP+ VTFT+VL AC+H GLV
Sbjct: 409 NQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLV 468

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EGR  F  M   YG+ P V+HY+C VD+LGRAG L+EA   I  MP +PG SVWGALL 
Sbjct: 469 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLS 528

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H +VE  E A  ++L+L+P++ GA V LS+IYA  G++++  ++R+ M    + KE
Sbjct: 529 ACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKE 588

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S IEV+G++H F   + SHP  ++IY +L ++  ++K  GYVP+   +L  V+EE  
Sbjct: 589 PGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQ- 647

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E+ L  HSERLAI YGL+   P  PIRIVKNLRVCGDCHT  K ISK+  REI+ RD  
Sbjct: 648 KERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQ 707

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF  G CSC D+W
Sbjct: 708 RFHHFADGVCSCGDFW 723



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 172/384 (44%), Gaps = 71/384 (18%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  +++  ARL     G+ +H  ++KS  + + ++ N+L+  YA CG L  A  VF  I 
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +++VSW +MI  FV G    +A + Y  M++   KPD+VT V++L+A      L+ G+ 
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 262 P-----------------------------NEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                         ++A  IF  L   KNV     T+  +++  
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLP-EKNV----VTWTLLIAGY 224

Query: 293 AQLGAMDI-----------------------------------GVQIHAKMKKQGIKLNC 317
           AQ G +D+                                   G ++H  + + G     
Sbjct: 225 AQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGREL 284

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  SLI MY KCG L++A ++F  +  RDV  W+ M+ G+A  G   EA++LF RMQ+ 
Sbjct: 285 WVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQ 344

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            +KP+ +TFT+VL +CS    + EG+    Q+    G    V   + +V M  + G +D+
Sbjct: 345 GIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGSMDD 403

Query: 438 AVEFIEKMPIVPGASVWGALLGAC 461
           A     +M        W A++  C
Sbjct: 404 ASLVFNQMS-ERNVVAWTAIITGC 426



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 15/222 (6%)

Query: 263 NEALSIFHELQL-SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            EAL I + + L    V  D   F  +L  CA+L +++ G ++HA + K GI+ N YL  
Sbjct: 29  KEALGIMNTMILQGTRVYSD--VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLEN 86

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ MY KCG+L  A  VF +++ R++  W+ MI  F       EA   +  M+ A  KP
Sbjct: 87  TLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKP 146

Query: 382 NAVTFTNVLCACSHSGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           + VTF ++L A ++  L+  G ++    +E    + P V   T +V M  + G + +A  
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKARV 204

Query: 441 FIEKMP---------IVPGASVWGALLGACKIHENVELAEYA 473
             +++P         ++ G +  G +  A ++ E ++ AE A
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/611 (40%), Positives = 359/611 (58%), Gaps = 53/611 (8%)

Query: 51  IKQLKQIHTQMLRTGLFFD--PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           ++ L+Q+H  +L   L      ++ SK+   CAL  F ++ YAR +F QIP PN+++WN+
Sbjct: 1   MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 109 LIRAYSS----SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           LI+ YS     S EPI    +F +L       PN FT  FV+KA A +  F  G  +H  
Sbjct: 61  LIKGYSQIHTLSKEPI---FLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           V+K  F   LF+  SL++FY  C ++  A  VF  +  +++V+W +MISG  + G     
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVG----- 172

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
                               AV                +EA+ +F E+Q    + PD  T
Sbjct: 173 --------------------AV----------------DEAMELFREMQ-KAGIQPDAMT 195

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            VSV+SACA  GA+DIG  +HA ++K  +  +  L+T+L+DMY KCG +++A +VF  + 
Sbjct: 196 LVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            +D   WS+MI GFA +G  ++A+D F +M E +V P+ VTF  VL AC+H GLV  GR 
Sbjct: 256 VKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRR 315

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           F++ M   +G+ P V+HY C VD+L R+GL++EA      M I P A+ W +LL  CK  
Sbjct: 316 FWSLMLE-FGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKK 374

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           + + L E    +LLELEP N    +++SN+Y+   +W+ +SELRK M+   +K  PGCSS
Sbjct: 375 KLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSS 434

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IEV+G +H+F+ G+ SHP  K +   ++E+  R++  GY P+ S +L  V +E+ +E AL
Sbjct: 435 IEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEE-KECAL 493

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
           + HSER AIAYGL+       IR+VKNLRVC DCH V K+ISKLY REI++RDR RFH F
Sbjct: 494 SEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKF 553

Query: 645 RGGNCSCMDYW 655
             G CSC D+W
Sbjct: 554 IKGTCSCKDFW 564


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/605 (39%), Positives = 351/605 (58%), Gaps = 46/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +++ KQ+H Q+L+   + + + AS L   CAL  + S++YA  +F QI QP  + +NT+I
Sbjct: 1   MEEFKQVHAQVLK---WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           R Y +      +  ++ +++       N FT+P + KA A L     G  IHG + K   
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDN-FTYPALFKACASLRSIEEGMQIHGYIFKRGL 116

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E DLF+ NSLI+ Y  CG + ++  VF  + ++DV SW+++I+                 
Sbjct: 117 EGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHAS------------- 163

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                       G W +E LS+F E+    +  P+E   VSVLS
Sbjct: 164 ---------------------------LGMW-SECLSVFGEMSREGSCRPEESILVSVLS 195

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC  LGA+D+G   H  + +   ++N  + TSLIDMY KCG ++K L +F  +  ++   
Sbjct: 196 ACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLS 255

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           +S MI G AM+G G EAL +FS M E  +KP+ V +  VL AC+H+GLVDEG   FN+M+
Sbjct: 256 YSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMK 315

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             +G+ P ++HY C+V ++GRAG+L++A+E I  MPI P   VW  LL ACK H N+E+ 
Sbjct: 316 LEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIG 375

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   L EL   N G  V+LSN+YA+  +W++V+++R  M   G  + PG S ++V  +
Sbjct: 376 EIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERK 435

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           I+KF++ + SHP CK +Y  + ++  +LK  GY P+ S +L  V+EE+ + Q L  HS++
Sbjct: 436 IYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEE-KRQRLKAHSQK 494

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ LI      PIRI +NLR+C DCHT  KLIS +Y REI +RDR RFHHF+ G CS
Sbjct: 495 LAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCS 554

Query: 651 CMDYW 655
           C DYW
Sbjct: 555 CRDYW 559



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 11/241 (4%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           +L K C +++ ++   QIH  + + GL  D +  + L      G    +E +  +F+ + 
Sbjct: 90  ALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLIN--MYGKCGKIELSCSVFEHMD 147

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + ++ +W+ +I A++S     +   +F ++       P E     V+ A   L    +G+
Sbjct: 148 RRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGR 207

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
             H  ++++  E ++ +  SLI  Y  CG +     +F  + KK+ +S++ MI+G    G
Sbjct: 208 CTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHG 267

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A++++ +M  E +KPD+V  + VLSAC            +E L  F+ ++L   + 
Sbjct: 268 RGMEALQVFSDMLEEGLKPDDVVYLGVLSAC------NHAGLVDEGLQCFNRMKLEHGIE 321

Query: 280 P 280
           P
Sbjct: 322 P 322


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/613 (37%), Positives = 362/613 (59%), Gaps = 43/613 (7%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+K+C N+++ KQ H ++L+ GLF D + AS L   CAL  + S++YA  +F Q+ +  
Sbjct: 36  SLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELG 95

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
            + +NT++R +       ++ + + ++       P+ FT+P ++KA ARL     G  +H
Sbjct: 96  SFQFNTMMRGHVKDMNTEEALITYKEMAERGVK-PDNFTYPTLLKACARLPAVEEGMQVH 154

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             ++K   E+D+F+ NSLI  Y  CG++ +   VF  + ++ V SW+++I+     G + 
Sbjct: 155 AHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWS 214

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
             + L  +M  E                        G W  E                 E
Sbjct: 215 DCLRLLGDMSNE------------------------GYWRAE-----------------E 233

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              VSVLSAC  LGA+D+G  +H  + +    LN  + TSLI+MY KCG+L K + +F  
Sbjct: 234 SILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQK 293

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +  ++   +S MI+G AM+G GRE L +F+ M E  ++P+ + +  VL ACSH+GLV EG
Sbjct: 294 MAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 353

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              FN+M+  +G+ P ++HY CMVD++GRAG +DEA+E I+ MP+ P   +W +LL A K
Sbjct: 354 LQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASK 413

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           +H N++  E A   L +L+ +     V+LSN+YA+  +W++V++ R +M   GL + PG 
Sbjct: 414 VHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGF 473

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S +EV  ++H+F++ ++ HP  + +Y  L ++  +LK  GY P+ + +L  V+EE+ ++Q
Sbjct: 474 SLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEE-KKQ 532

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L+ HS++LAIAY LI      PIRIV+NLR+C DCHT  KLIS +++REI +RDR+RFH
Sbjct: 533 RLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFH 592

Query: 643 HFRGGNCSCMDYW 655
           HF+ G CSC DYW
Sbjct: 593 HFKDGACSCRDYW 605


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/577 (41%), Positives = 349/577 (60%), Gaps = 63/577 (10%)

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P++ +F  ++++ A   + ++G+A H  ++K  FE D+ +   L+ FYA  GDL  A  
Sbjct: 7   LPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKR 66

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-------------------- 235
           VF+ + ++DVV+ N+MIS   + G+ E+A  L+  M   N                    
Sbjct: 67  VFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSA 126

Query: 236 -----VKP--DEVTMVAVLSACAKKRDL------------------------------EF 258
                  P  D V+  A++    K + L                              EF
Sbjct: 127 RLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEF 186

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
           G     A+S+F ++Q S+NV P E T VS+LSACA LGA+D+G  IH  ++ + +K++  
Sbjct: 187 G----TAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVV 241

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L  +LIDMY KCG L+ A++VFH +  +++F W+++I G  M G G EA+  F  M++  
Sbjct: 242 LGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEG 301

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           +KP+ VTF  +L  CSHSGL+  G+ +F++M  VYG+ PGV+HY CMVD+LGRAG L EA
Sbjct: 302 IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEA 361

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
           +E I  MP+ P + V G+LL AC+IH++ +L E     LLEL+P + G  V LSN+YA  
Sbjct: 362 LELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASL 421

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
            +WD+V+  RK M   G+ K PGCSSIEVN  +H+F+AG++SHP   +I + LDEI   L
Sbjct: 422 SRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKEL 481

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K  G+VPN +++L  +EEE+ +E A+  HSER+A+A+GL+S  P + IR+VKNLR C DC
Sbjct: 482 KGQGHVPNTANVLHDIEEEE-KEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDC 540

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           H+  KLIS  + REI++RDR RFHHFR G+CSC DYW
Sbjct: 541 HSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 88  LEYAREMFDQIPQP-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           L  A+E+F  +    N  TWNT+I AY    E   +  +F Q+  +    P E T   ++
Sbjct: 154 LVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQM-QSENVKPTEVTMVSLL 212

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A A L    +G+ IHG +     + D+ + N+LI  Y  CG L  A  VF  + +K++ 
Sbjct: 213 SACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIF 272

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG-RWPNEA 265
            WNS+I G    G  E+AI  +  ME E +KPD VT V +LS C+    L  G R+ +E 
Sbjct: 273 CWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEM 332

Query: 266 LSIF 269
           L ++
Sbjct: 333 LGVY 336



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 20/250 (8%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L  +V P + +F  +L +CA  G   +G   H ++ K G + +  L T L+D Y K G+L
Sbjct: 2   LRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDL 61

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A  VF  +  RDV   + MI+  + +G   EA +LF  M E     N+ ++ +++   
Sbjct: 62  KCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTE----RNSCSWNSMITCY 117

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
              G ++  R+ F+   PV  VV     +  ++D   ++  L  A E    M     +  
Sbjct: 118 CKLGDINSARLMFD-CNPVKDVVS----WNAIIDGYCKSKQLVAAQELFLLMGSARNSVT 172

Query: 454 WGALLGACKIHENVELAEY--ACSHLLELEPEN----HGALVLLSNIYAKTGKWDNVSEL 507
           W  ++ A      V+  E+  A S   +++ EN       +V L +  A  G  D    +
Sbjct: 173 WNTMISA-----YVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWI 227

Query: 508 RKHMRVSGLK 517
             ++R   LK
Sbjct: 228 HGYIRTKRLK 237


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/624 (38%), Positives = 362/624 (58%), Gaps = 60/624 (9%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQI 98
           IK C  +  L   +Q H Q L  G   D + +S L   ++ C       L  AR +FD+I
Sbjct: 159 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG-----ELRDARTLFDEI 213

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-------NSPYFPNEFTFPFVIKAAAR 151
              N+ +W ++I  Y  + +  ++ ++F + +        +     +      V+ A +R
Sbjct: 214 SHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSR 273

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           + +  + + +HG +IK  FE DL + N+L+  YA CG+L ++  VF  + ++DV+SWNS+
Sbjct: 274 VSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSI 333

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+ + Q G                                            E++ IFH 
Sbjct: 334 IAVYAQNGM-----------------------------------------STESMEIFHR 352

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +     +N +  T  +VL ACA  G+  +G  IH ++ K G++ N ++ TS+IDMY KCG
Sbjct: 353 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCG 412

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            ++ A + F  ++ ++V  WS M+AG+ M+G  +EAL++F  M  A VKPN +TF +VL 
Sbjct: 413 KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLA 472

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH+GL++EG  +F  M   + V PGV+HY CMVD+LGRAG L EA + I+ M + P  
Sbjct: 473 ACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDF 532

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            VWGALLGAC++H+NV+L E +   L EL+P+N G  VLLSNIYA  G+W++V  +R  M
Sbjct: 533 VVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILM 592

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           + SGL K PG S +++ G +H FL G+  HP  ++IY  L+++  +L+  GYVP+ + +L
Sbjct: 593 KNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVL 652

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V  E+ +E  L +HSE+LA+A+G+++  P   I I+KNLRVCGDCHT  K ISK+ +R
Sbjct: 653 HDVGHEE-KEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDR 711

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD  RFHHFR G CSC DYW
Sbjct: 712 EIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 36/328 (10%)

Query: 38  PHPVFSLIKQCKNIKQ---LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           P  + S++  C  + +    + +H  +++ G   D    + L    A      L  +R +
Sbjct: 261 PIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMD--AYAKCGELGVSRRV 318

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD + + ++ +WN++I  Y+ +    +S  IF ++V +     N  T   V+ A A    
Sbjct: 319 FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGS 378

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R+G+ IH  VIK   E ++F+  S+I  Y  CG + MA   F  + +K+V SW++M++G
Sbjct: 379 QRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAG 438

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +   G  ++A+E++ EM M  VKP+ +T V+VL+AC+    LE G    +A+S  HE  +
Sbjct: 439 YGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS--HEFDV 496

Query: 275 SKNV----------------------------NPDEFTFVSVLSACAQLGAMDIGVQIHA 306
              V                             PD   + ++L AC     +D+G +I A
Sbjct: 497 EPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG-EISA 555

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +   +    NC     L ++Y   G  +
Sbjct: 556 RKLFELDPKNCGYYVLLSNIYADAGRWE 583


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/693 (37%), Positives = 384/693 (55%), Gaps = 70/693 (10%)

Query: 26  TTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF 85
           + L   N   H      SLI    +  QLKQIH ++L  GL F  +  +KL    A  +F
Sbjct: 9   SPLLYTNSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSF 66

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFP 143
             + +AR++FD +P+P ++ WN +IR YS +     + +++  +QL   S   P+ FTFP
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS---PDSFTFP 123

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIG 201
            ++KA + L   ++G+ +H  V +  F+ D+F+ N LI  YA C  L  A  VF  + + 
Sbjct: 124 HLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLP 183

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++ +VSW +++S + Q G   +A+E++ +M   +VKPD V +V+VL+A    +DL+ GR 
Sbjct: 184 ERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRS 243

Query: 262 PNEA-----LSIFHELQLSKNV-------------------NPDEFTFVSVLSACAQLGA 297
            + +     L I  +L +S N                    +P+   + +++S  A+ G 
Sbjct: 244 IHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGY 303

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLI--------------------------------- 324
               + +  +M  + ++ +    TS I                                 
Sbjct: 304 AREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSA 363

Query: 325 --DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
             DM+ KCG+++ A  VF     RDV VWS MI G+ ++G  REA+ L+  M+   V PN
Sbjct: 364 LIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPN 423

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            VTF  +L AC+HSG+V EG  FFN+M   + + P  +HY C++D+LGRAG LD+A E I
Sbjct: 424 DVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVI 482

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           + MP+ PG +VWGALL ACK H +VEL EYA   L  ++P N G  V LSN+YA    WD
Sbjct: 483 KCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWD 542

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            V+E+R  M+  GL K+ GCS +EV G +  F  G+ SHP  +EI  +++ I +RLK  G
Sbjct: 543 RVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGG 602

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           +V N+   L  + +E+  E+ L  HSER+AIAYGLIS     P+RI KNLR C +CH   
Sbjct: 603 FVANKDASLHDLNDEEA-EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAAT 661

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KLISKL +REI++RD  RFHHF+ G CSC DYW
Sbjct: 662 KLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 379/680 (55%), Gaps = 72/680 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGL---FFDPYSASKLFTPCALGTFSSLEYAREM 94
           + SL+  C +I  L   KQ+H+ +L+ G+   +    S   L+  C +     +  A E+
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV-----IVEALEI 301

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F    + N+  WN ++ AY   ++  +SF +F Q+V  +   PNEFT+P +++      +
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMV-AAGVRPNEFTYPCLLRTCTYAGE 360

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             +G+ IH + IK+ FE D+++S  LI  Y+  G L  A  +  ++  KDVVSW SMI+G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------- 260
           +VQ  F ++A+E +++M++  + PD + + + +SACA  + +  G+              
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSAD 480

Query: 261 ---W------------PNEALSIF----HELQLSKN------------------------ 277
              W              EA S+F    H+ +++ N                        
Sbjct: 481 VSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQ 540

Query: 278 --VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             V  + FTFVS +SA A L  +  G QIHA + K G      +  +LI +Y KCG+++ 
Sbjct: 541 AGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIED 600

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A   F  +  R+   W+T+I   + +G G EALDLF +M++  +KPN VTF  VL ACSH
Sbjct: 601 AKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 660

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV+EG  +F  M   +G+ P   HY C+VD+LGRAG LD A +F+E+MP+   A VW 
Sbjct: 661 VGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWR 720

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL AC++H+N+E+ E A  +LLELEP +  + VLLSN YA TGKW     +RK M+  G
Sbjct: 721 TLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRG 780

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++KEPG S IEV   +H F  G+  HPL  +IY  L ++  RL   GY+     L    E
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKE 840

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E     A  +HSE+LA+A+GL+S+ PS P+R++KNLRVC DCHT  K  S++  REI+L
Sbjct: 841 KEQKDPTAF-VHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVL 899

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD YRFHHF  GNCSC D+W
Sbjct: 900 RDVYRFHHFNNGNCSCGDFW 919



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 198/445 (44%), Gaps = 52/445 (11%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH + +  GL  D  + + L    A      ++ AR +F+Q+   +  +W  ++  Y+ +
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGL--VQRARRVFEQLSARDNVSWVAMLSGYARN 121

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
               ++  ++ Q+ + S   P  +    V+ A  +   F  G+ +H  V K     +  +
Sbjct: 122 GLGEEAVGLYHQM-HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N+LI  Y   G L++A  VF  +   D V++N++IS   Q G  E A+E          
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALE---------- 230

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                                          IF E++LS    PD  T  S+L+ACA +G
Sbjct: 231 -------------------------------IFEEMRLS-GWTPDCVTIASLLAACASIG 258

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            ++ G Q+H+ + K G+  +  +  SL+D+Y KCG + +ALE+F +    +V +W+ M+ 
Sbjct: 259 DLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLV 318

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
            +       ++ DLF +M  A V+PN  T+  +L  C+++G ++ G    + +    G  
Sbjct: 319 AYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ-IHLLSIKTGFE 377

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE--LAEYAC 474
             +     ++DM  + G LD+A   +E +      S W +++     HE  +  L  +  
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMIAGYVQHEFCKEALETFKD 436

Query: 475 SHLLELEPENHGALVLLSNIYAKTG 499
             L  + P+N G   L S I A  G
Sbjct: 437 MQLFGIWPDNIG---LASAISACAG 458


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/619 (39%), Positives = 363/619 (58%), Gaps = 55/619 (8%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S +K C  I  +K   Q+H+ +++  +  D +    L   ++ C L     L+ AR +FD
Sbjct: 294 SALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL-----LQDARMVFD 348

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P  ++  WN++I  YS+    I++  +F  +      F N+ T   ++K+ A      
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF-NQTTLSTILKSTAGSQANG 407

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             + +H + IKS ++ D +++NSL+  Y  C  L  A  VF +   +D+V++ SMI+ + 
Sbjct: 408 FCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYS 467

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E+A+++Y  M+                                           +
Sbjct: 468 QYGLGEEALKMYLRMQ------------------------------------------DR 485

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           ++ PD F F S+ +ACA L A + G QIH  + K G+  + +   SL++MY KCG++D A
Sbjct: 486 DIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDA 545

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F+ +  R +  WS MI G A +G GR+AL LF +M +  + PN +T  +VL AC+H+
Sbjct: 546 SCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHA 605

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV E R FF  ME ++G+ P  +HY CMVD+LGR G LDEA+  +++MP    A+VWGA
Sbjct: 606 GLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGA 665

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA +IH+N+EL  +A   LL LEPE  G  +LL+NIYA TG WDNV+++R+ M+ S +
Sbjct: 666 LLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLV 725

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPG S IE+  +++ F+ G+ SHP  KEIY KLD++  RL S GYVP     L  VE+
Sbjct: 726 KKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQ 785

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +EQ L  HSE+LA+A+GLI+  P  PIR+ KNLRVC DCHT  K ISK+ +REI++R
Sbjct: 786 IE-KEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVR 844

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHFR G+CSC DYW
Sbjct: 845 DINRFHHFRDGSCSCGDYW 863



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 226/502 (45%), Gaps = 64/502 (12%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           K++     IH +++R GL         L++ C          AR++     +P+L +W+ 
Sbjct: 64  KDVSSGMAIHARIIRLGLLGLRNRLVNLYSKC-----QCFRVARKLVIDSSEPDLVSWSA 118

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM---- 164
           LI  Y  +    ++ + + ++ Y      NEFTF  V+K  +      +G+ IH +    
Sbjct: 119 LISGYVQNGRGEEALLTYYEM-YLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVT 177

Query: 165 -VIKSSFEDDLFISNSLIHFYAICGDLAMAYCV---FVMIG-KKDVVSWNSMISGFVQGG 219
            +I +    + F  +++++  A   D      V    + +G   D  S N+++  + + G
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSG 237

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACA--KKRDLEFGRWPNEALSIFHELQLSKN 277
             E AI ++ E+     KPD V+  AV++ C   +K DL        AL +  ++  S  
Sbjct: 238 CPEAAIAVFYEIP----KPDIVSWNAVIAGCVLHEKNDL--------ALKLLGKMG-SYR 284

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V P  FT  S L ACA +G + +G Q+H+ + K  ++ + ++   LIDMY+KCG L  A 
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL------- 390
            VF  +  +DV VW+++I+G++  G   EA+ LF+ M +  ++ N  T + +L       
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQ 404

Query: 391 ----CACSHSGLVDEGRMF----FNQMEPVYG-------------VVPG--VKHYTCMVD 427
               C   H+  +  G  +     N +   YG             V P   +  YT M+ 
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464

Query: 428 MLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELE-PE 483
              + GL +EA++   +M    I P A ++ +L  AC      E  +    H+L+     
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLS 524

Query: 484 NHGALVLLSNIYAKTGKWDNVS 505
           +  A   L N+YAK G  D+ S
Sbjct: 525 DVFAGNSLVNMYAKCGSIDDAS 546


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/614 (41%), Positives = 360/614 (58%), Gaps = 57/614 (9%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           + Q  Q+H Q +++    +  + SKLFT  A      L YAR + +  P  N Y +NT+I
Sbjct: 1   MSQALQLHAQFIKSQ---NQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTII 57

Query: 111 RAYSSSAEP------IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           RAYS ++ P      +  F+  LQ   N P  P+ FT+ F +K+  RL   +  + +HG 
Sbjct: 58  RAYSHTSNPTHHFQALSLFIFMLQPHTNVPK-PDTFTYSFALKSCGRLKLTQQAKQLHGF 116

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           + K  F  DL+I N+LIH Y+  G+L +A  VF  +  +DVVSW SMI+GFV      +A
Sbjct: 117 INKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEA 176

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           I+L++ M                        LE G                  V+ +E T
Sbjct: 177 IQLFQRM------------------------LEVG------------------VDVNEAT 194

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            +SVL  CA  GA+ +G ++H  +K++GI     + T+LI MY+KCG L+ A EVF  V 
Sbjct: 195 VISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVL 254

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RDVFVW+ MI G A +G  +EA++LF  M+   VKP+  T   VL A  ++GLV EG M
Sbjct: 255 DRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYM 314

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           FFN ++  Y + P +KH+ CMVD+L + G L+EA +FI  MP+ P A +W  L+ ACK+H
Sbjct: 315 FFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVH 374

Query: 465 ENVELAEYACSHLLELE---PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
            + E AE    H LEL+     + G+ +L SN+YA TGKW + +E+R+ M   GL K PG
Sbjct: 375 ADTERAERLMKH-LELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPG 433

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S IEV+G +H+F+ G+  HP  ++I+ KLD++V +L+  GY P  S ++  +++E+   
Sbjct: 434 SSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAI 493

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           Q L+ HSE+LA+AYGLI   P   IRIVKNLR C DCH   KLISK+Y R+I++RDR RF
Sbjct: 494 QLLH-HSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRF 552

Query: 642 HHFRGGNCSCMDYW 655
           HHF+ G+CSC DYW
Sbjct: 553 HHFKNGDCSCKDYW 566



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 146/307 (47%), Gaps = 32/307 (10%)

Query: 2   TDNPPQHMETLSTPVISLPRH---PNPTTLTVNNGHQHHPHPVFSLIKQCKNIK---QLK 55
           T NP  H + LS  +  L  H   P P T T +          F+L K C  +K   Q K
Sbjct: 63  TSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYS----------FAL-KSCGRLKLTQQAK 111

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           Q+H  + + G  FD Y  + L           L  AR++FD++   ++ +W ++I  + +
Sbjct: 112 QLHGFINKMGFGFDLYIQNALIH--MYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVN 169

Query: 116 ---SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
              + E IQ F   L++  +     NE T   V++  A      VG+ +HG+V +   + 
Sbjct: 170 HHLTVEAIQLFQRMLEVGVDV----NEATVISVLRGCADSGALSVGRKVHGIVKEKGIDF 225

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
              +  +LIH Y+ CG L  A  VF  +  +DV  W +MI G    G  ++AIEL+ EME
Sbjct: 226 KANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEME 285

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
             NVKPDE T++ VLSA    R+    R   E    F+++Q   ++ P+   F  ++   
Sbjct: 286 TCNVKPDERTIMVVLSA---YRNAGLVR---EGYMFFNDVQKRYSMKPNIKHFGCMVDLL 339

Query: 293 AQLGAMD 299
           A+ G ++
Sbjct: 340 AKGGCLE 346


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 366/620 (59%), Gaps = 53/620 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFD 96
           S++  C  +  L   KQ+H++++R GL  D     S   ++  CA     S++ +R++F+
Sbjct: 56  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD--GSVDDSRKVFE 113

Query: 97  QIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           Q+P+ N+ +W  +I AY+ S E   ++  +F +++ +    PN F+F  V+KA   L   
Sbjct: 114 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSDP 172

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ ++   +K        + NSLI  YA  G +  A   F ++ +K++VS+N+++ G+
Sbjct: 173 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 232

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +                 N+K +E                        A  +F+E+   
Sbjct: 233 AK-----------------NLKSEE------------------------AFLLFNEIA-D 250

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             +    FTF S+LS  A +GAM  G QIH ++ K G K N  +  +LI MY++CGN++ 
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF+ ++ R+V  W++MI GFA +G    AL++F +M E   KPN +T+  VL ACSH
Sbjct: 311 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 370

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G++ EG+  FN M   +G+VP ++HY CMVD+LGR+GLL EA+EFI  MP++  A VW 
Sbjct: 371 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 430

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LLGAC++H N EL  +A   +LE EP++  A +LLSN++A  G+W +V ++RK M+   
Sbjct: 431 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 490

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           L KE GCS IEV   +H+F  GE+SHP   +IY +LD++ +++K  GY+P+   +L  +E
Sbjct: 491 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIE 550

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE  +EQ L  HSE++A+A+GLIS   S+PIRI KNLRVCGDCHT  K IS    REI++
Sbjct: 551 EEQ-KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 609

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC DYW
Sbjct: 610 RDSNRFHHIKNGVCSCNDYW 629



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 55/256 (21%)

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           A AY VF  + ++++V+W  MI+ F Q G                              C
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLG------------------------------C 31

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           A+           +A+ +F +++LS  V PD FT+ SVLSAC +LG + +G Q+H+++ +
Sbjct: 32  AR-----------DAIDLFLDMELSGYV-PDRFTYSSVLSACTELGLLALGKQLHSRVIR 79

Query: 311 QGIKLNCYLTTSLIDMYTKC---GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG-CGRE 366
            G+ L+  +  SL+DMY KC   G++D + +VF  +   +V  W+ +I  +A  G C +E
Sbjct: 80  LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKE 139

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-- 424
           A++LF +M    ++PN  +F++VL AC +      G   ++     Y V  G+    C  
Sbjct: 140 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVG 194

Query: 425 --MVDMLGRAGLLDEA 438
             ++ M  R+G +++A
Sbjct: 195 NSLISMYARSGRMEDA 210



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  +  R++  W+ MI  FA  GC R+A+DLF  M+ +   P+  T+++VL AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---GLLDEAVEFIEKMP 446
            GL+  G+   +++  + G+   V     +VDM  +    G +D++ +  E+MP
Sbjct: 64  LGLLALGKQLHSRVIRL-GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 116


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 366/620 (59%), Gaps = 53/620 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFD 96
           S++  C  +  L   KQ+H++++R GL  D     S   ++  CA     S++ +R++F+
Sbjct: 61  SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD--GSVDDSRKVFE 118

Query: 97  QIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           Q+P+ N+ +W  +I AY+ S E   ++  +F +++ +    PN F+F  V+KA   L   
Sbjct: 119 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSDP 177

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ ++   +K        + NSLI  YA  G +  A   F ++ +K++VS+N+++ G+
Sbjct: 178 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 237

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +                 N+K +E                        A  +F+E+   
Sbjct: 238 AK-----------------NLKSEE------------------------AFLLFNEIA-D 255

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             +    FTF S+LS  A +GAM  G QIH ++ K G K N  +  +LI MY++CGN++ 
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF+ ++ R+V  W++MI GFA +G    AL++F +M E   KPN +T+  VL ACSH
Sbjct: 316 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 375

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G++ EG+  FN M   +G+VP ++HY CMVD+LGR+GLL EA+EFI  MP++  A VW 
Sbjct: 376 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 435

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LLGAC++H N EL  +A   +LE EP++  A +LLSN++A  G+W +V ++RK M+   
Sbjct: 436 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 495

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           L KE GCS IEV   +H+F  GE+SHP   +IY +LD++ +++K  GY+P+   +L  +E
Sbjct: 496 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIE 555

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE  +EQ L  HSE++A+A+GLIS   S+PIRI KNLRVCGDCHT  K IS    REI++
Sbjct: 556 EEQ-KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 614

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC DYW
Sbjct: 615 RDSNRFHHIKNGVCSCNDYW 634



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 55/256 (21%)

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           A AY VF  + ++++V+W  MI+ F Q G                              C
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLG------------------------------C 36

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           A+           +A+ +F +++LS  V PD FT+ SVLSAC +LG + +G Q+H+++ +
Sbjct: 37  AR-----------DAIDLFLDMELSGYV-PDRFTYSSVLSACTELGLLALGKQLHSRVIR 84

Query: 311 QGIKLNCYLTTSLIDMYTKC---GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG-CGRE 366
            G+ L+  +  SL+DMY KC   G++D + +VF  +   +V  W+ +I  +A  G C +E
Sbjct: 85  LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKE 144

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-- 424
           A++LF +M    ++PN  +F++VL AC +      G   ++     Y V  G+    C  
Sbjct: 145 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVG 199

Query: 425 --MVDMLGRAGLLDEA 438
             ++ M  R+G +++A
Sbjct: 200 NSLISMYARSGRMEDA 215



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  +  R++  W+ MI  FA  GC R+A+DLF  M+ +   P+  T+++VL AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---GLLDEAVEFIEKMP 446
            GL+  G+   +++  + G+   V     +VDM  +    G +D++ +  E+MP
Sbjct: 69  LGLLALGKQLHSRVIRL-GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 121


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/641 (39%), Positives = 371/641 (57%), Gaps = 33/641 (5%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            SL+  CKN++ L QIH   ++ G+  D Y   KL   CA+    +L YAR +    P+P
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           + + +NTL+R YS S EP  S  +F++++     FP+ F+F FVIKA       R G  +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H   +K   E  LF+  +LI  Y  CG +  A  VF  + + ++V+WN++I+   +G   
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDV 180

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-----FGRWP-------------- 262
             A E++ +M + N      +   +L+   K  +LE     F   P              
Sbjct: 181 AGAREIFDKMLVRN----HTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 236

Query: 263 ------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 NE+   F ELQ +  ++P+E +   VLSAC+Q G+ + G  +H  ++K G    
Sbjct: 237 AHNGSFNESFLYFRELQRA-GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI 295

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV-WSTMIAGFAMYGCGREALDLFSRMQ 375
             +  +LIDMY++CGN+  A  VF  ++ +   V W++MIAG AM+G G EA+ LF+ M 
Sbjct: 296 VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMT 355

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
              V P+ ++F ++L ACSH+GL++EG  +F++M+ VY + P ++HY CMVD+ GR+G L
Sbjct: 356 AYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKL 415

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
            +A +FI +MPI P A VW  LLGAC  H N+ELAE     L EL+P N G LVLLSN Y
Sbjct: 416 QKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAY 475

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A  GKW +V+ +RK M V  +KK    S +EV   ++KF AGE    +  E + KL EI+
Sbjct: 476 ATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEII 535

Query: 556 ARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
            RLK   GY P  +  L  VEEE+ ++Q ++ HSE+LA+A+ L  +     IRIVKNLR+
Sbjct: 536 LRLKDEAGYTPEVASALYDVEEEEKEDQ-VSKHSEKLALAFALARLSKGANIRIVKNLRI 594

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH V KL SK+Y  EIL+RDR RFH F+ G+CSC DYW
Sbjct: 595 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/625 (40%), Positives = 362/625 (57%), Gaps = 57/625 (9%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY----SASKLFTPCALGTFSSLEYAREMFD 96
           V SL+++C  ++ L+  H   LR  L    Y    S        A  T  +  YAR +FD
Sbjct: 23  VVSLVRRCPGLRALRGAHAHFLRLRLPRLTYAFALSKLLASCAAASATTVASSYARALFD 82

Query: 97  QIPQPNLYTWNTLIRAYSSSAE-----PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           QIP+P  + +N+LIRA S S          +F+++ ++++     PN FT  FV+KA   
Sbjct: 83  QIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKACTA 142

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWNS 210
           L +   GQ +H        E   ++   L++ YA C ++A+A  VF  M+  K++V+W+S
Sbjct: 143 LGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDKNLVAWSS 199

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI G+ + G                                           NEAL +F 
Sbjct: 200 MIGGYSRMGMV-----------------------------------------NEALGLFR 218

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++Q +  VNPDE T VSV+SACA+ GA+D+G  +HA + ++GI ++  L+T+LIDMY KC
Sbjct: 219 DMQ-AVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKC 277

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +++A  VF ++  RD   WS MI G AM+G   +AL LFSRM + KV+PN VTF  VL
Sbjct: 278 GLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVL 337

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC+HSGLVD+GR ++  M+ + G+   +++Y CMVD+L R+GLLDEA  F+  MPI P 
Sbjct: 338 SACAHSGLVDDGRRYWCTMQEL-GIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPN 396

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
           + +W  LL A K    +++ E A   L ELEP+N    VLLSN+YA   +WD V  +RK 
Sbjct: 397 SVIWRNLLVASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKK 456

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+ + +    GCSSIE+NG +HKF+  + SHP  K+I   L EI  R+   G+ P  + +
Sbjct: 457 MKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAV 516

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  V EE+ +E AL  HSERLAIAYGL+  +    IR+VKNLR C DCH V K+ISK Y 
Sbjct: 517 LHDVVEEE-KEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYG 575

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFH F GG+CSC D+W
Sbjct: 576 REIIVRDRVRFHRFIGGSCSCNDFW 600


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/571 (41%), Positives = 360/571 (63%), Gaps = 18/571 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ AR +  Q P+ N+ +W +LI  YS +  P  +   F   + +    P+E      + 
Sbjct: 187 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCF-NCMLSDGVAPDEVAVIGALS 245

Query: 148 AAARLVQFRVGQAIHGMVIKSSFE--DDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KD 204
           A ++L    +G+ +H +V +      D+L ++  LI  YA CGD+A A  VF  +G+ + 
Sbjct: 246 ACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVA--LIDMYAKCGDIAQAQAVFDAVGRGQK 303

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
              WN++I G+ + G  + A  L+ +M   +V    +T  ++++       +  GR   +
Sbjct: 304 PEPWNAIIDGYCKLGHVDVARSLFDQMGARDV----ITFNSMITGY-----IHSGRL-RD 353

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F +++    +  D FT VS+L+ACA LGA+  G  +HA ++++ ++ + YL T+L+
Sbjct: 354 ALQLFMQMR-RHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALL 412

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG +D+A  VFH +  RDV  W+ MIAG A  G G++AL+ F +M+    +P +V
Sbjct: 413 DMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSV 472

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL ACSHS L+DEGR+ FN+M  ++ + P V+HY CM+D+L R+GLLDEA+  ++ 
Sbjct: 473 TYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQT 532

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A +WG++L AC++H+N++LA +A  HLL+L PE     V L NIY  + +W + 
Sbjct: 533 MPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADA 592

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
             +R  M   G+KK  G SSI V G++HKF+A + SHP   EI + ++EI  RLKS GY 
Sbjct: 593 KRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYS 652

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P  S +   V+EE+ +EQAL  HSE++AIA+GLIS+ PS PI IVKNLRVC DCH+  KL
Sbjct: 653 PVTSRIAVDVDEEE-KEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKL 711

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +S+L+NREI++RDR RFHHFR G CSC D+W
Sbjct: 712 VSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 198/435 (45%), Gaps = 51/435 (11%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS---LEYAREMFDQIPQPNLYT 105
           ++++Q  Q+H  +  +G      SA  L +     T S+   L Y   +FD++P    + 
Sbjct: 10  RSVRQASQLHALLTTSGRIAHRPSAEHLLSSLT-NTISAPRHLRYVLSLFDRLPHSTTFL 68

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI--HG 163
           ++T +RA   ++      ++ L+ + +       FTF FV +  A   + R G  +  H 
Sbjct: 69  FDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHA 128

Query: 164 MVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +++        ++N LIH YA  G    A   F  I  KD V W ++I G V+ G  +
Sbjct: 129 ACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLD 188

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           +A  L  +    NV    V+  ++++  ++      GR P +A+  F+ + LS  V PDE
Sbjct: 189 EARRLLVQAPERNV----VSWTSLIAGYSRA-----GR-PADAVYCFNCM-LSDGVAPDE 237

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              +  LSAC++L  +D+G  +H  + ++ I++   L  +LIDMY KCG++ +A  VF  
Sbjct: 238 VAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDA 297

Query: 343 V--------------------------------KSRDVFVWSTMIAGFAMYGCGREALDL 370
           V                                 +RDV  +++MI G+   G  R+AL L
Sbjct: 298 VGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQL 357

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F +M+   ++ +  T  ++L AC+  G +  GR     +E    V   V   T ++DM  
Sbjct: 358 FMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI-VEEDVYLGTALLDMYM 416

Query: 431 RAGLLDEAVEFIEKM 445
           + G +DEA     +M
Sbjct: 417 KCGRVDEATAVFHRM 431


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/667 (38%), Positives = 376/667 (56%), Gaps = 72/667 (10%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           K L Q++ Q++ +GL    +   K    C    F  + YA + F ++ +P++  WN +I+
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAIIK 58

Query: 112 AYSSS---AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
            Y+       PI+ +M  +Q+   S   PN FTF +V+KA        +G+ IHG   K 
Sbjct: 59  GYTQKNIVDAPIRMYMD-MQI---SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 114

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F  ++F+ NSL+  YA  G ++ A  VF  +  + VVSW S+ISG+VQ G   +A+ ++
Sbjct: 115 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 174

Query: 229 REMEMENVKPDEVTMVAVLSAC-----------------------------------AKK 253
           +EM   NVKPD + +V+V++A                                    AK+
Sbjct: 175 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKR 234

Query: 254 RDLEFGRW-------PN------------------EALSIFHELQLSKNVNPDEFTFVSV 288
             +E  R+       PN                  EA+ +F E+ ++KN+  D  T  S 
Sbjct: 235 GLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITMRSA 293

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           + A AQ+G++++   +   + K   + + ++ T LIDMY KCG++  A  VF  V  +DV
Sbjct: 294 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 353

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
            +WS MI G+ ++G G+EA+ L++ M++A V PN  TF  +L AC +SGLV EG   F+ 
Sbjct: 354 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 413

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M P +G+ P  +HY+C+VD+LGRAG L++A +FI  MPI PG SVWGALL ACKIH  V 
Sbjct: 414 M-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 472

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           L E A   L  L+P N G  V LSN+YA    W  V+ +R  M   GL K+ G SSIE+N
Sbjct: 473 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G +  F  G+ SHP  KEI+ +LD +  RLK+ GYVP+   +L  +  E++ E+ L  HS
Sbjct: 533 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEI-EETLCHHS 591

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           ERLA+AYG+IS  P   +RI KNLR C +CH+  KLISKL +REI++RD  RFHHF+ G 
Sbjct: 592 ERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGV 651

Query: 649 CSCMDYW 655
           CSC D+W
Sbjct: 652 CSCGDFW 658


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/668 (38%), Positives = 377/668 (56%), Gaps = 72/668 (10%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +K L Q++ Q++ +GL    +   K    C    F  + YA + F ++ +P++  WN +I
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACL--HFGDVNYAHKAFREVSEPDILLWNAII 72

Query: 111 RAYSSS---AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           + Y+       PI+ +M  +Q+   S   PN FTF +V+KA        +G+ IHG   K
Sbjct: 73  KGYTQKNIVDAPIRMYMD-MQI---SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFK 128

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
             F  ++F+ NSL+  YA  G ++ A  VF  +  + VVSW S+ISG+VQ G   +A+ +
Sbjct: 129 YGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNV 188

Query: 228 YREMEMENVKPDEVTMVAVLSAC-----------------------------------AK 252
           ++EM   NVKPD + +V+V++A                                    AK
Sbjct: 189 FKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAK 248

Query: 253 KRDLEFGRW-------PN------------------EALSIFHELQLSKNVNPDEFTFVS 287
           +  +E  R+       PN                  EA+ +F E+ ++KN+  D  T  S
Sbjct: 249 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITMRS 307

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
            + A AQ+G++++   +   + K   + + ++ T LIDMY KCG++  A  VF  V  +D
Sbjct: 308 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 367

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V +WS MI G+ ++G G+EA+ L++ M++A V PN  TF  +L AC +SGLV EG   F+
Sbjct: 368 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 427

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M P +G+ P  +HY+C+VD+LGRAG L++A +FI  MPI PG SVWGALL ACKIH  V
Sbjct: 428 LM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKV 486

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            L E A   L  L+P N G  V LSN+YA    W  V+ +R  M   GL K+ G SSIE+
Sbjct: 487 RLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEI 546

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
           NG +  F  G+ SHP  KEI+ +LD +  RLK+ GYVP+   +L  +  E++ E+ L  H
Sbjct: 547 NGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEI-EETLCHH 605

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SERLA+AYG+IS  P   +RI KNLR C +CH+  KLISKL +REI++RD  RFHHF+ G
Sbjct: 606 SERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDG 665

Query: 648 NCSCMDYW 655
            CSC D+W
Sbjct: 666 VCSCGDFW 673


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/618 (38%), Positives = 368/618 (59%), Gaps = 52/618 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           +L+K+C ++ +L   K IH  +L +    D    + L    A      L YAR++FD++ 
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYA--KCGDLVYARKLFDEMS 77

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV-- 157
             ++ TW  LI  YS    P Q  ++ L  +      PN+FT   ++KAA+ +    V  
Sbjct: 78  SRDVVTWTALITGYSQHDRP-QDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG+ ++  ++ ++++S +++  YA C  L  A  +F ++  K+ VSWN++I+G+ +
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYAR 196

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  +KA  L+  M                                          L +N
Sbjct: 197 KGQGDKAFCLFSNM------------------------------------------LREN 214

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V P  FT+ SVL ACA +G+++ G  +HA M K G KL  ++  +L+DMY K G+++ A 
Sbjct: 215 VKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAK 274

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +  RDV  W++M+ G++ +G G+ AL  F  M   ++ PN +TF  VL ACSH+G
Sbjct: 275 KVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           L+DEGR +F+ M+  Y V P + HY  MVD+LGRAG LD A++FI +MPI P A+VWGAL
Sbjct: 335 LLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGAL 393

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC++H+N+EL  YA   + EL+    G  VLL NIYA  G+W++ +++RK M+ SG+K
Sbjct: 394 LGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVK 453

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEP CS +E+  E+H F+A + +HP  +EI++  ++I  ++K  GYVP+ SH+L  ++++
Sbjct: 454 KEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQ 513

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E  L  HSE+LA+A+ L++  P   IRI KN+R+CGDCH+  K +SKL  REI++RD
Sbjct: 514 E-REAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRD 572

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF  G CSC DYW
Sbjct: 573 TNRFHHFCDGACSCEDYW 590


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/617 (39%), Positives = 366/617 (59%), Gaps = 53/617 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIPQP 101
           +++    ++++L+Q H  ++ TG        +KL T  CA G   S+ Y R +F  +  P
Sbjct: 15  AVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAG---SIAYTRRLFRSVSDP 71

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           + + +N+LI+A S     + + + + +++  S   P+ +TF  VIKA A L    +G  +
Sbjct: 72  DSFLFNSLIKASSKFGFSLDAVLFYRRMLL-SRIVPSTYTFTSVIKACADLSLLCIGTLV 130

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  V  S +  D F+  +LI FYA      +A  VF  + ++ +V+WNSMISG+ Q G  
Sbjct: 131 HSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGL- 189

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
                                                    NEA+ +F++++ S+ V PD
Sbjct: 190 ----------------------------------------ANEAVEVFNKMRESR-VEPD 208

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
             TFVSVLSAC+QLG++D G  +H  +   GI +N  L TSL++M+++CG++ +A  VF+
Sbjct: 209 SATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFY 268

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           ++   +V +W+ MI+G+ M+G G EA+++F RM+   V PN+VTF  VL AC+H+GL+DE
Sbjct: 269 SMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDE 328

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALL 458
           GR  F  M+  YGVVPGV+H+ CMVDM GR GLL+EA +F++ +    +VP  +VW A+L
Sbjct: 329 GRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVP--AVWTAML 386

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GACK+H+N +L      +L+  EPEN G  VLLSN+YA  G+ D V  +R  M   GLKK
Sbjct: 387 GACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKK 446

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           + G S+I+V+   + F  G+ SHP   EIY  LDE++ R K  GY P     +  +E E+
Sbjct: 447 QVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEE 506

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE+LA+A+GL+       +RIVKNLR+C DCH+  K IS + NREI++RD+
Sbjct: 507 -REYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDK 565

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFR G+CSC DYW
Sbjct: 566 LRFHHFREGSCSCSDYW 582


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 336/552 (60%), Gaps = 50/552 (9%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WNT+IR YS S  P ++ ++++ ++      PN FTFPF++ + ARL     G  +H  +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           IK  FE DLF+ N+LIH Y++ G+L +A  +F     +D+VS+N+MI G+          
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYA--------- 112

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
                         EV                    P  AL +F E+Q     N DE T 
Sbjct: 113 --------------EVNQ------------------PESALCLFGEMQ-----NSDEVTL 135

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGI-KLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           V+VLSACA+LGA D+G +++ +  + G+   N  LT +++DMY KCG++D ALE+F  V 
Sbjct: 136 VAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG 195

Query: 345 S--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              +  FV+++MIAG A +G G  A+ +F  +    +KP+ VTF  VLCAC HSGL++EG
Sbjct: 196 KNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEG 255

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           +  F  M   YG+ P ++HY CMVD+LGR G L+EA + ++KMP    + +W ALL AC+
Sbjct: 256 KKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACR 315

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H NV++ E A   LLE+E ++    VLLSNI A   +W+   ++RK M   G++K PG 
Sbjct: 316 THGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGW 375

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IE+ G IH+F+A + SHP  KEI   L ++  RLKS GYVPN + ++  ++EE+ +E 
Sbjct: 376 SYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEE-KES 434

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            ++ HSE+LA+A+GL+   P+  IRIVKNLR+C DCH   KL+S++Y REI +RD  RFH
Sbjct: 435 VVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFH 494

Query: 643 HFRGGNCSCMDY 654
           HFR G+CSCMD+
Sbjct: 495 HFRNGSCSCMDF 506



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 21/227 (9%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFD 96
           L+  C  +  L+   ++H+ +++ G        S LF   AL      F +L  AR +FD
Sbjct: 41  LLNSCARLSSLEPGHEVHSHIIKHGF------ESDLFVRNALIHLYSVFGNLNLARTLFD 94

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +    +L ++NT+I+ Y+   +P  +  +F ++  NS    +E T   V+ A ARL  F 
Sbjct: 95  ESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM-QNS----DEVTLVAVLSACARLGAFD 149

Query: 157 VGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMIS 213
           +G+ ++   I++  F  +  ++ +++  YA CG +  A  +F  +GK  K    +NSMI+
Sbjct: 150 LGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIA 209

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           G  Q G  E AI ++RE+    +KPDEVT V VL AC     +E G+
Sbjct: 210 GLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGK 256


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/671 (39%), Positives = 375/671 (55%), Gaps = 127/671 (18%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           HP  +L+  CK+ + LKQIH+Q+++TGL    ++ SKL   CA+  F +L YA  +F+ I
Sbjct: 33  HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            QPN + WNT+IR  S S+ P+ +   +++++      PN +TFPF++K+ A++   + G
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEG 151

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM------------------- 199
           + IHG V+K   E D F+  SLI+ YA  G+L  A  VF                     
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211

Query: 200 ------------IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
                       I  +D VSWN+MI+G+ Q G FE+A+  ++EM+  NV P+E TMV VL
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 248 SACA-----------------------------------------KKRDLEFG------- 259
           SACA                                         K RDL  G       
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 260 RWP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
            W              EAL++F ++Q S NV P++ TFVS+L ACA LGA+D+G  IHA 
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQS-NVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 308 MKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
           + K+ + L N  L TSLIDMY KCGN++ A +VF  +K + +  W+ MI+G AM+G    
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           AL+LF +M++   +P+ +TF  VL ACSH+GLV+ GR  F+ M   Y + P ++HY CM+
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMI 510

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+LGRAGL DEA   ++ M + P  ++WG+LLGAC++H NVEL E+A  HL ELEPEN G
Sbjct: 511 DLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPG 570

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
           A VLLSNIYA  G+WD+V+ +R  +   G+KK                          ++
Sbjct: 571 AYVLLSNIYATAGRWDDVARIRTKLNDKGMKKX-------------------------QD 605

Query: 547 IYSKLDEIVARLKSF----GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
           IY  LDEI    +SF    G VP+ S +L  ++EE  +E +L+ HSE+LAIA+GLIS +P
Sbjct: 606 IYKMLDEID---QSFGERPGXVPDTSEVLYDMDEE-WKEGSLSHHSEKLAIAFGLISTKP 661

Query: 603 SQPIRIVKNLR 613
              IRIVKNLR
Sbjct: 662 ETTIRIVKNLR 672


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 359/616 (58%), Gaps = 50/616 (8%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           +L+K+C   K L Q   +H  +L++    D    + L    A     SLE AR++F+++P
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMP 122

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q +  TW TLI  YS    P  + + F Q++    Y PNEFT   VIKAAA   +   G 
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG  +K  F+ ++ + ++L+  Y   G +  A  VF  +  ++ VSWN++I+G  +  
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             EKA+EL++ M                                          L     
Sbjct: 242 GTEKALELFQGM------------------------------------------LRDGFR 259

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P  F++ S+  AC+  G ++ G  +HA M K G KL  +   +L+DMY K G++  A ++
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 319

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  RDV  W++++  +A +G G+EA+  F  M+   ++PN ++F +VL ACSHSGL+
Sbjct: 320 FDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLL 379

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DEG  ++  M+   G+VP   HY  +VD+LGRAG L+ A+ FIE+MPI P A++W ALL 
Sbjct: 380 DEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H+N EL  YA  H+ EL+P++ G  V+L NIYA  G+W++ + +RK M+ SG+KKE
Sbjct: 439 ACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 498

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P CS +E+   IH F+A +  HP  +EI  K +E++A++K  GYVP+ SH++  V++++ 
Sbjct: 499 PACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE- 557

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSE++A+A+ L++  P   I I KN+RVCGDCHT  KL SK+  REI++RD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ GNCSC DYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 44/258 (17%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D   + ++L  C     +  G  +HA + +   + +  +  +L++MY KCG+L++A +VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-------- 392
             +  RD   W+T+I+G++ +    +AL  F++M      PN  T ++V+ A        
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 393 CSHS---------------------------GLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           C H                            GL+D+ ++ F+ +E    V      +  +
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-----SWNAL 233

Query: 426 VDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLEL-E 481
           +    R    ++A+E  + M      P    + +L GAC     +E  ++  +++++  E
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 482 PENHGALVLLSNIYAKTG 499
                A   L ++YAK+G
Sbjct: 294 KLVAFAGNTLLDMYAKSG 311


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/642 (39%), Positives = 371/642 (57%), Gaps = 59/642 (9%)

Query: 22  HPN----PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           HPN    P +L   +  Q     + SL+++ K+I Q+  IH Q++R G   DP+   +L 
Sbjct: 17  HPNSNSNPKSLKSLDQKQ-----IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELL 71

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
             C+     +++YA  +F     PN+Y +  LI  + SS     +  ++ +++++S   P
Sbjct: 72  RSCS--KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS-ILP 128

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + +    ++KA    +  R G+ +H   +K     +  +   ++  Y  CG+L  A  VF
Sbjct: 129 DNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 188

Query: 198 VMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             + +    KD V W +MI GFV            R  EM                    
Sbjct: 189 EEMPEDVVAKDTVCWTAMIDGFV------------RNEEM-------------------- 216

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                    N AL  F  +Q  +NV P+EFT V VLSAC+QLGA++IG  +H+ M+K  I
Sbjct: 217 ---------NRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 266

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
           +LN ++  +LI+MY++CG++D+A  VF  +K RDV  ++TMI+G +M G  R+A++LF  
Sbjct: 267 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 326

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M   +++P  VTF  VL ACSH GLVD G   F+ M   YGV P ++HY CMVD+LGR G
Sbjct: 327 MIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVG 386

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            L+EA + I  M + P   + G LL ACK+H+N+EL E     L +    + G  VLLS+
Sbjct: 387 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSH 446

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           +YA +GKW   +++R  M+ +G++KEPGCSSIEVN EIH+FL G+  HP  + IY KL+E
Sbjct: 447 VYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEE 506

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           +   L+  GY P +  +LQ +E+ + +E AL +HSERLAI YGLIS EP   IR++KNLR
Sbjct: 507 LNRLLRLEGYHPEKEVVLQDIEDGE-KEWALAIHSERLAICYGLISTEPCTVIRVMKNLR 565

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VC DCH+  KLI+K+  R++++RDR RFH+F  G CSC DYW
Sbjct: 566 VCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/628 (38%), Positives = 375/628 (59%), Gaps = 18/628 (2%)

Query: 34  HQHHPHPVFSLIKQCK---NIKQLKQIHTQMLRTGL-FFDPYSASKLFTPCALGTFSSLE 89
           H ++      L+ +C    +++QL +I  Q++ + +   DP   +  F   +  +  +L 
Sbjct: 17  HDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVS-SSHGNLR 75

Query: 90  YAREMFDQ-IPQPNLYTWNTLIRAYSSSAEPIQSFMIFL-QLVYNSPYFPNEFTFPFVIK 147
           ++  +F+  +  PN++ +N L++A+S       +   F  QLV  +   P+E+TF  V+K
Sbjct: 76  HSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLK 135

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A L Q   GQ +H  V K   E +LF+ NSL+  Y   G   +A  +F  +  +DVVS
Sbjct: 136 ACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN++ISG+   G  +KA  ++  M  +N+    V+   ++S  A+           +A+ 
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNL----VSWSTMISGYARNEKYA------DAIE 245

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F ++Q    + P++ T VSVLSACA LGA+D+G  IH  +++  I++  +L  +L DMY
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 305

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG + +A  VFH +  RDV  WS +I G AMYG   EA + F+ M E  ++PN ++F 
Sbjct: 306 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFM 365

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L AC+H+GLVD+G  +F+ M  VYG+ P ++HY C+VD+L RAG LD+A   I  MP+
Sbjct: 366 GLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPM 425

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   VWGALLG C+I+++ E  E     +LEL+  + G+LV L+N+YA  G+ D+ +  
Sbjct: 426 QPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASC 485

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  MR +   K PGCS IE+N  +++F  G+SSHP    IYS + E+  ++K  GY P  
Sbjct: 486 RLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKT 545

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             ++  ++EE+ +E AL+ HSE+LA+A+GLI+      IRIVKNLRVC DCH   K+ISK
Sbjct: 546 DLVIHNIDEEE-KEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISK 604

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI++RDR RFHHF+ G CSC DYW
Sbjct: 605 IVEREIVVRDRSRFHHFKDGKCSCNDYW 632


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 352/614 (57%), Gaps = 47/614 (7%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
             L+ +C+N+  ++Q+H  ++  G   D   A+KL    A     +++ A  +FD +   
Sbjct: 7   IDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYA--QHKAIDDAYSLFDGLTMR 64

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +  TW+ ++  ++ + +    +  F +L+      P+ +T PFVI+        ++G+ I
Sbjct: 65  DSKTWSVMVGGFAKAGDHAGCYATFRELL-RCGVTPDNYTLPFVIRTCRDRTDLQIGRVI 123

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H +V+K     D F+  SL+  YA C  +  A  +F  +  KD+V+W  MI  +     +
Sbjct: 124 HDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY 183

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E  + L+  M  E V                                           PD
Sbjct: 184 ESLV-LFDRMREEGVV------------------------------------------PD 200

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +   V+V++ACA+LGAM      +  + + G  L+  L T++IDMY KCG+++ A EVF 
Sbjct: 201 KVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFD 260

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K ++V  WS MIA +  +G G++A+DLF  M    + PN VTF ++L ACSH+GL++E
Sbjct: 261 RMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEE 320

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G  FFN M   + V P VKHYTCMVD+LGRAG LDEA+  IE M +     +W ALLGAC
Sbjct: 321 GLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGAC 380

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           +IH  +ELAE A + LLEL+P+N G  VLLSNIYAK GKW+ V++ R  M    LKK PG
Sbjct: 381 RIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPG 440

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            + IEV+ + ++F  G+ SHP  KEIY  L  ++ +L+  GYVP+   +LQ VEEE V++
Sbjct: 441 WTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEE-VKQ 499

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           + L  HSE+LAIA+GLI++   +PIRI KNLRVCGDCHT +K++S +  R I++RD  RF
Sbjct: 500 EMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRF 559

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G CSC DYW
Sbjct: 560 HHFNDGTCSCGDYW 573


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/646 (38%), Positives = 365/646 (56%), Gaps = 87/646 (13%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSL-IKQCKNIK---QLKQIHTQMLRTGLFFDPY 71
           + +L   P P +   N  H   P    +L I   +N     +L+Q+H Q+++T       
Sbjct: 35  LFALSSFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSIL 94

Query: 72  SASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
             +++   CA     S  YA+++F  + +  P  + WN+ ++A +    PI + M+F +L
Sbjct: 95  PLTRVGLVCAFT--PSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRL 152

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
                  P+ FT   V++A   L+    G+ +HG+V K  F                   
Sbjct: 153 -RQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR------------------ 193

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
                            SW SMI+G+VQ G  ++AI L+ +ME   VK +EVT+VAVL+A
Sbjct: 194 -----------------SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAA 236

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C                                          A LGA+D+G++IH    
Sbjct: 237 C------------------------------------------ADLGALDLGMRIHEYSN 254

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           + G K N  ++ +LIDMY KCG L++A +VF  ++ R V  WS MI G AM+G   EAL 
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 314

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LFS M +  ++PN VTF  +L ACSH GL+ EGR FF  M   YG++P ++HY CMVD+L
Sbjct: 315 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLL 374

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
            RAGLL EA EFI  MP+ P   VWGALLGAC++H+NVE+AE A  HLLEL+P N G  V
Sbjct: 375 SRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYV 434

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           +LSNIYA+ G+W++ + +RK M+   +KK PG SSI V+G +H+F+AGE SHP  ++I+ 
Sbjct: 435 VLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQ 494

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
           + +E++  ++  GYVPN S +L  +EE + + + ++ HSE+LA+ +GL++     PIRI+
Sbjct: 495 RWEELLEEMRLKGYVPNTSVVLLDIEEGE-KVKFVSRHSEKLALVFGLMNTPAETPIRIM 553

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLR+C DCH+  KLIS + NREI++RDR RFH F   +CSC DYW
Sbjct: 554 KNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 365/620 (58%), Gaps = 53/620 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFD 96
           S++  C  +  L   KQ+H++++R GL  D     S   ++  CA     S++ +R++F+
Sbjct: 254 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD--GSVDDSRKVFE 311

Query: 97  QIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           Q+P+ N+ +W  +I AY  S E   ++  +F +++ +    PN F+F  V+KA   L   
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSDP 370

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ ++   +K        + NSLI  YA  G +  A   F ++ +K++VS+N+++ G+
Sbjct: 371 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 430

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +                 N+K +E                        A  +F+E+   
Sbjct: 431 AK-----------------NLKSEE------------------------AFLLFNEIA-D 448

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             +    FTF S+LS  A +GAM  G QIH ++ K G K N  +  +LI MY++CGN++ 
Sbjct: 449 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 508

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF+ ++ R+V  W++MI GFA +G    AL++F +M E   KPN +T+  VL ACSH
Sbjct: 509 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 568

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G++ EG+  FN M   +G+VP ++HY CMVD+LGR+GLL EA+EFI  MP++  A VW 
Sbjct: 569 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 628

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LLGAC++H N EL  +A   +LE EP++  A +LLSN++A  G+W +V ++RK M+   
Sbjct: 629 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 688

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           L KE GCS IEV   +H+F  GE+SHP   +IY +LD++ +++K  GY+P+   +L  +E
Sbjct: 689 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIE 748

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE  +EQ L  HSE++A+A+GLIS   S+PIRI KNLRVCGDCHT  K IS    REI++
Sbjct: 749 EEQ-KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 807

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC DYW
Sbjct: 808 RDSNRFHHIKNGVCSCNDYW 827



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 202/412 (49%), Gaps = 70/412 (16%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQ 97
           L+K C   +N +  K +H +++++GL  D     +   L++ C        E AR +F+ 
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG-----DTETARLIFEG 104

Query: 98  IP-QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +  + +L +W+ ++  +++++   Q+   FL ++    ++PNE+ F  VI+A +      
Sbjct: 105 MGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML-ELGFYPNEYCFAAVIRACSNANYAW 163

Query: 157 VGQAIHGMVIKSSF-EDDLFISNSLIH-FYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           VG+ I+G V+K+ + E D+ +   LI  F    GDL  AY VF  + ++++V+W  MI+ 
Sbjct: 164 VGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITR 223

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G    AI+L+ +ME+    PD  T  +VLSAC                        
Sbjct: 224 FAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC------------------------ 259

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC---G 331
                              +LG + +G Q+H+++ + G+ L+  +  SL+DMY KC   G
Sbjct: 260 ------------------TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYG-CGREALDLFSRMQEAKVKPNAVTFTNVL 390
           ++D + +VF  +   +V  W+ +I  +   G C +EA++LF +M    ++PN  +F++VL
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEA 438
            AC +      G   ++     Y V  G+    C    ++ M  R+G +++A
Sbjct: 362 KACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDA 408



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 51/321 (15%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           N+P  P+  T+  ++K+  R   F++G+ +H  +++S  E D  + N+LI  Y+ CGD  
Sbjct: 39  NAP--PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE 96

Query: 192 MAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            A  +F  +G K+D+VSW++M+S F       +AI  + +M                   
Sbjct: 97  TARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM------------------- 137

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                LE G +PNE                  + F +V+ AC+      +G  I+  + K
Sbjct: 138 -----LELGFYPNE------------------YCFAAVIRACSNANYAWVGEIIYGFVVK 174

Query: 311 QG-IKLNCYLTTSLIDMYTK-CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            G ++ +  +   LIDM+ K  G+L  A +VF  +  R++  W+ MI  FA  GC R+A+
Sbjct: 175 TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAI 234

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           DLF  M+ +   P+  T+++VL AC+  GL+  G+   +++  + G+   V     +VDM
Sbjct: 235 DLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRL-GLALDVCVGCSLVDM 293

Query: 429 LGRA---GLLDEAVEFIEKMP 446
             +    G +D++ +  E+MP
Sbjct: 294 YAKCAADGSVDDSRKVFEQMP 314



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 18/202 (8%)

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
           R L+ GR  + A S   +L   +N  PD  T+  +L +C +     +G  +H K+ + G+
Sbjct: 18  RQLDVGRL-HHAFSTL-DLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGL 75

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           +L+  +  +LI +Y+KCG+ + A  +F  +   RD+  WS M++ FA      +A+  F 
Sbjct: 76  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFL 135

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-------M 425
            M E    PN   F  V+ ACS++     G       E +YG V    +          +
Sbjct: 136 DMLELGFYPNEYCFAAVIRACSNANYAWVG-------EIIYGFVVKTGYLEADVCVGCEL 188

Query: 426 VDMLGR-AGLLDEAVEFIEKMP 446
           +DM  + +G L  A +  +KMP
Sbjct: 189 IDMFVKGSGDLGSAYKVFDKMP 210


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/642 (38%), Positives = 373/642 (58%), Gaps = 59/642 (9%)

Query: 22  HPN----PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           HPN    P +L   +  Q     + SL+++ ++I Q+  IH Q++R G   DP+   +L 
Sbjct: 24  HPNSNSNPKSLKSLDQKQ-----IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELL 78

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
             C+     +++YA  +F     PN+Y +  LI  + SS   +++  ++ ++++ S   P
Sbjct: 79  RSCS--KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHES-ILP 135

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + +    ++KA    +  R G+ +H   +K  F  +  +   ++  Y  CG+L  A  VF
Sbjct: 136 DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 195

Query: 198 VMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             + +    KD V W +MI GFV+                     +E T           
Sbjct: 196 EEMPEDVVAKDTVCWTAMIDGFVR---------------------NEET----------- 223

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                    N AL  F  +Q  +NV P+EFT V VLSAC+QLGA++IG  +H+ M+K  I
Sbjct: 224 ---------NRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEI 273

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
           +LN ++  +LI+MY++CG++D+A  VF  +K RDV  ++TMI+G +M G  R+A++LF  
Sbjct: 274 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 333

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M   +++P  VTF  VL ACSH GLVD G   F+ M   Y V P ++HY CMVD+LGR G
Sbjct: 334 MVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 393

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            L+EA + I  M + P   + G LL ACK+H+N+EL E     L +    + G  VLLS+
Sbjct: 394 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSH 453

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           +YA +GKW   +++R  M+ +G++KEPGCSSIEVN EIH+FL G+  HP  + IY KL+E
Sbjct: 454 VYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEE 513

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           +   L+  GY P +  +LQ +E+ + +E AL +HSERLAI YGLIS EP   IR++KNLR
Sbjct: 514 LNRLLRLEGYHPEKEVVLQDIEDGE-KEWALAMHSERLAICYGLISTEPCTMIRVMKNLR 572

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VC DCH+  KLI+K+  R+I++RDR RFH+F  G CSC DYW
Sbjct: 573 VCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/629 (40%), Positives = 368/629 (58%), Gaps = 24/629 (3%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFS 86
           G + +P  +  +I  C  +K L   K++ + +   G+       + L   +  C      
Sbjct: 226 GVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCG----- 280

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            +  AR++FD+    NL  +NT++  Y          +I  +++   P  P++ T    I
Sbjct: 281 DICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPR-PDKVTMLSTI 339

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A A+L    VG++ H  V+++  E    ISN++I  Y  CG    A  VF  +  K VV
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV 399

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +WNS+I+G V+ G  E A  ++ EM    ++ D V+   ++ A  +    E      EA+
Sbjct: 400 TWNSLIAGLVRDGDMELAWRIFDEM----LERDLVSWNTMIGALVQVSMFE------EAI 449

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F E+Q ++ +  D  T V + SAC  LGA+D+   +   ++K  I ++  L T+L+DM
Sbjct: 450 ELFREMQ-NQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDM 508

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           +++CG+   A+ VF  ++ RDV  W+  I   AM G    A++LF+ M E KVKP+ V F
Sbjct: 509 FSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVF 568

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +L ACSH G VD+GR  F  ME  +G+ P + HY CMVD+LGRAGLL+EAV+ I+ MP
Sbjct: 569 VALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMP 628

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           I P   VWG+LL AC+ H+NVELA YA   L +L PE  G  VLLSNIYA  GKW +V+ 
Sbjct: 629 IEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVAR 688

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R  M+  G++K PG SSIEV G IH+F +G+ SH     I   L+EI  RL   GYVP+
Sbjct: 689 VRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPD 748

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            +++L  V+E++ +E  L+ HSE+LA+AYGLI+     PIR+VKNLR+C DCH+ AKL+S
Sbjct: 749 TTNVLLDVDEQE-KEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVS 807

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KLYNREI +RD  R+H F+ G CSC DYW
Sbjct: 808 KLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 228/445 (51%), Gaps = 58/445 (13%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLF-FDPYS-ASKLF-TPCALGTFSSLEYAREMF--DQI 98
           L+  CK +K+LKQ+H  M++ GL    P S  +KL  +   +GT  SL+YAR  F  D  
Sbjct: 31  LLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDG 90

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +L+ +N LIR Y+S+    Q+ ++++Q++      P+++TFPF++ A ++++    G
Sbjct: 91  NMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSACSKILALSEG 149

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +HG V+K   E D+F+SNSLIHFYA CG + +   +F  + +++VVSW S+I+G+   
Sbjct: 150 VQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGR 209

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
              ++A+ L+ +M    V+P+ VTMV V+SACAK +DLE G+                  
Sbjct: 210 DLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGK------------------ 251

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                                   ++ + + + G++L+  +  +L+DMY KCG++  A +
Sbjct: 252 ------------------------KVCSYISELGMELSTIMVNALVDMYMKCGDICAARQ 287

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F    ++++ +++T+++ +  +    + L +   M +   +P+ VT  + + AC+  G 
Sbjct: 288 IFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGD 347

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +  G+         Y +  G++ +      ++DM  + G  + A +  E MP       W
Sbjct: 348 LSVGK-----SSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTW 401

Query: 455 GALLGACKIHENVELAEYACSHLLE 479
            +L+       ++ELA      +LE
Sbjct: 402 NSLIAGLVRDGDMELAWRIFDEMLE 426


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/630 (38%), Positives = 362/630 (57%), Gaps = 51/630 (8%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTF 85
           +G++     +  +I  C N++ L   +Q+H+Q +R GL  D         ++  C++   
Sbjct: 265 SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD-- 322

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            S+  AR++FDQI   N+++W  +I  Y       +  +   + +  +   PN FTF   
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +KA A L   R+G+ +    +K  F     ++NSLI  YA  G +  A   F ++ +K++
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+N++I  +                                   AK  + E      EA
Sbjct: 443 ISYNTVIDAY-----------------------------------AKNLNSE------EA 461

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L +F+E++  + +    FTF S+LS  A +G +  G QIHA++ K G+KLN  +  +LI 
Sbjct: 462 LELFNEIE-DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALIS 520

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CGN++ A +VF  ++ R+V  W+++I GFA +G   +AL+LF +M E  V+PN VT
Sbjct: 521 MYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVT 580

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  VL ACSH GLV+EG   F  M   +GV+P ++HY CMVD+LGR+G L EA++FI  M
Sbjct: 581 YIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSM 640

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P    A VW   LGAC++H N+EL ++A   ++E EP +  A +LLSN+YA T KWD VS
Sbjct: 641 PYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVS 700

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK M+   L KE GCS +EV  ++HKF  G++SHP   EIY +L  +  ++K  GYVP
Sbjct: 701 NIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVP 760

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           N   +L  VEEE  +E+ L  HSE++A+A+GLIS    +PIR+ KNLR+CGDCH+  K I
Sbjct: 761 NLDFVLHDVEEEQ-KEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYI 819

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S    REI++RD  RFHH + G CSC +YW
Sbjct: 820 SMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 204/461 (44%), Gaps = 92/461 (19%)

Query: 17  ISLPRHPNPTTLT------VNNGHQHHP------------HP---VFSL-IKQCKNIKQL 54
           +  P   NP  LT      +NNG  H              HP    +SL +K+C   +  
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 55  K---QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQP-NLYTWN 107
                +H ++ ++ L  D  + + L   ++ C        E A  +F  +    +L +W+
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG-----QWEKATSIFQLMGSSRDLISWS 137

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            ++  ++++    ++ + F+ ++ N  Y+PNE+ F    +A +      VG +I G V+K
Sbjct: 138 AMVSCFANNNMGFRALLTFVDMIENG-YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVK 196

Query: 168 SSF-EDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           + + + D+ +   LI  +    GDL  A+ VF  + +++ V+W  MI+  +Q G+  +AI
Sbjct: 197 TGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAI 256

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           +L+ EM +   +PD  T+  V+SACA                   EL L           
Sbjct: 257 DLFLEMILSGYEPDRFTLSGVISACANM-----------------ELLL----------- 288

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC---GNLDKALEVFHT 342
                         +G Q+H++  + G+ L+  +   LI+MY KC   G++  A ++F  
Sbjct: 289 --------------LGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 343 VKSRDVFVWSTMIAGFAMYGC-GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           +   +VF W+ MI G+   G    EALDLF  M    V PN  TF++ L AC++   +  
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 402 GRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEA 438
           G   F      + V  G     C    ++ M  R+G +D+A
Sbjct: 395 GEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/677 (36%), Positives = 381/677 (56%), Gaps = 73/677 (10%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           L+K C +  +L   K+IH  ++++G   D ++ + L   +  C       +  AR++FD+
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC-----RQVNEARKVFDR 195

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L +WNT++  YS +     +  +   +   +   P+  T   V+ A + L    V
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK-PSFITIVSVLPAVSALRLISV 254

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IHG  ++S F+  + IS +L+  YA CG L  A  +F  + +++VVSWNSMI  +VQ
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW---------------- 261
               ++A+ ++++M  E VKP +V+++  L ACA   DLE GR+                
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374

Query: 262 -------------PNEALSIFHELQ------------------------------LSKNV 278
                         + A S+F +LQ                               S+ V
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD FT+VSV++A A+L        IH  + +  +  N ++TT+L+DMY KCG +  A  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  +  R V  W+ MI G+  +G G+ AL+LF  MQ+  +KPN VTF +V+ ACSHSGL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+ G   F  M+  Y +   + HY  MVD+LGRAG L+EA +FI +MP+ P  +V+GA+L
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH+NV  AE A   L EL P++ G  VLL+NIY     W+ V ++R  M   GL+K
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PGCS +E+  E+H F +G ++HP  K+IY+ L++++  +K  GYVP+ + +L +  E D
Sbjct: 675 TPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGV--END 732

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
           V+EQ L+ HSE+LAI++GL++      I + KNLRVC DCH   K IS +  REI++RD 
Sbjct: 733 VKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDM 792

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G CSC DYW
Sbjct: 793 QRFHHFKNGACSCGDYW 809



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 150/609 (24%), Positives = 271/609 (44%), Gaps = 136/609 (22%)

Query: 18  SLPRHPNPTTLTVNNGHQH------------HPHPVFSLIKQCKNIKQLKQIHTQMLRTG 65
           ++P+ PNP +      H+H            + HP   L+++C ++K+L+QI   + + G
Sbjct: 10  TVPQIPNPPSR-----HRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNG 64

Query: 66  LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           L+ + +  +KL +      + S++ A  +F+ I       ++T+++ ++  ++  ++   
Sbjct: 65  LYQEHFFQTKLVS--LFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQF 122

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           F+++ Y+    P  + F +++K      + RVG+ IHG+++KS F  DLF    L + YA
Sbjct: 123 FVRMRYDDVE-PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
            C  +  A  VF  + ++D+VSWN++++G+ Q G    A+E+ + M  EN+KP  +T+V+
Sbjct: 182 KCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241

Query: 246 VLSACAKKRDLEFGRWPN----------------------------EALSIFHELQLSKN 277
           VL A +  R +  G+  +                            E      +  L +N
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN 301

Query: 278 V--------------NPDEF--------------TFVSVLS---ACAQLGAMDIGVQIHA 306
           V              NP E               T VSV+    ACA LG ++ G  IH 
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK 361

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              + G+  N  +  SLI MY KC  +D A  +F  ++SR +  W+ MI GFA  G   +
Sbjct: 362 LSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPID 421

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSH--------------------------SGLVD 400
           AL+ FS+M+   VKP+  T+ +V+ A +                           + LVD
Sbjct: 422 ALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVD 481

Query: 401 E---------GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIV 448
                      R+ F+ M   +     V  +  M+D  G  G    A+E  E+M    I 
Sbjct: 482 MYAKCGAIMIARLIFDMMSERH-----VTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 536

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLL------ELEPENHGALVLLSNIYAKTGK-- 500
           P    + +++ AC  H  +  A   C +++      EL  +++GA+V   ++  + G+  
Sbjct: 537 PNGVTFLSVISACS-HSGLVEAGLKCFYMMKENYSIELSMDHYGAMV---DLLGRAGRLN 592

Query: 501 --WDNVSEL 507
             WD + ++
Sbjct: 593 EAWDFIMQM 601


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 367/611 (60%), Gaps = 60/611 (9%)

Query: 54  LKQIHTQMLRTGLFFDPYSA-----SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           L+QIH ++L       P S+     SK+ +  AL  F + +YAR++F QIP P ++ +N+
Sbjct: 4   LRQIHARILT---HVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60

Query: 109 LIRA--YSS--SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +IR   Y+   S EPI    +F  +V      PN FT  FV+KA + ++    G+ IH  
Sbjct: 61  VIRGCLYTKIPSKEPIH---LFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQ 117

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           +++S F    ++ +SL++FY+ C ++ +A  VF  I ++++V W++M+SG+ + G     
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMI--- 174

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
                                                 NEAL +F E+Q+   + PDE +
Sbjct: 175 --------------------------------------NEALIMFREMQVV-GIEPDEVS 195

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            V VLSACA +GA+DIG  +HA +KK+ I ++  L T+LI+MY KCG ++KA E+F  ++
Sbjct: 196 LVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMR 255

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            +D   WS+MI G A++G   +AL++FSRM+EA+ KPN VTF  +L AC+H GLV +G+ 
Sbjct: 256 VKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKR 315

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +++ M  + G+ P ++HY CMVD+L R GL+DEA +F   +P  P   +W  LL A   +
Sbjct: 316 YWSSMLEL-GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP-TPDPVIWRTLLVAYTKN 373

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
             ++ AE     LLELEP      ++L+N+YA   + + VS +RK M+ +G+K  PGC+S
Sbjct: 374 RMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTS 433

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IEV+G +H F+ G+ SHP  +EI   L ++  ++   GY P  S +L LV +E+ +E  L
Sbjct: 434 IEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEE-KENVL 492

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSERLAIAYGL+  +    IRIVKNLRVCGDCH V K+ISK+Y+REI++RDR RFH F
Sbjct: 493 YEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKF 552

Query: 645 RGGNCSCMDYW 655
             G CSC DYW
Sbjct: 553 VNGTCSCKDYW 563



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 27/238 (11%)

Query: 22  HPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL-- 76
           +PNP T T+             ++K C  I  L   KQIH Q+LR+G    PY  S L  
Sbjct: 87  YPNPNTFTMA-----------FVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVN 135

Query: 77  -FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNS 133
            ++ C       +  AR++FD+I + NL  W+ ++  Y+      ++ ++F  +Q+V   
Sbjct: 136 FYSKC-----EEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIE 190

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P+E +   V+ A A +    +G+ +H  + K     DL ++ +LI+ YA CG +  A
Sbjct: 191 ---PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKA 247

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             +F  +  KD  +W+SMI G    G  E A+ ++  ME    KP+ VT + +LSACA
Sbjct: 248 REIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACA 305


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 369/639 (57%), Gaps = 53/639 (8%)

Query: 18  SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF 77
           +  +H    T+   N       P+  LI +C ++++L QI    +++ +  D    +KL 
Sbjct: 17  TFTKHSKIDTVNTQN-------PIL-LISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLI 67

Query: 78  TPCALG-TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
             C    T SS+ YAR +F+ + +P++  +N++ R YS    P++ F +F++++ +    
Sbjct: 68  NFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDG-IL 126

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ +TFP ++KA A       G+ +H + +K   +D++++  +LI+ Y  C D+  A CV
Sbjct: 127 PDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCV 186

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  I +  VV +N+MI+G+ +                                  + R  
Sbjct: 187 FDRIVEPCVVCYNAMITGYAR----------------------------------RNR-- 210

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                PNEALS+F E+Q  K + P+E T +SVLS+CA LG++D+G  IH   KK      
Sbjct: 211 -----PNEALSLFREMQ-GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + T+LIDM+ KCG+LD A+ +F  ++ +D   WS MI  +A +G   +++ +F RM+ 
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             V+P+ +TF  +L ACSH+G V+EGR +F+QM   +G+VP +KHY  MVD+L RAG L+
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A EFI+K+PI P   +W  LL AC  H N++LAE     + EL+  + G  V+LSN+YA
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           +  KW+ V  LRK M+     K PGCSSIEVN  +H+F +G+       +++  LDE+V 
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            LK  GYVP+ S ++     +  +E  L  HSE+LAI +GL++  P   IR+VKNLRVC 
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCR 564

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH  AKLIS ++ R+++LRD  RFHHF  G CSC D+W
Sbjct: 565 DCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/620 (38%), Positives = 365/620 (58%), Gaps = 53/620 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFD 96
           S++  C  +  L   KQ+H++++R GL  D     S   ++  CA     S++ +R++F+
Sbjct: 236 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD--GSVDDSRKVFE 293

Query: 97  QIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           Q+P+ N+ +W  +I AY  S E   ++  +F +++ +    PN F+F  V+KA   L   
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSDP 352

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ ++   +K        + NSLI  YA  G +  A   F ++ +K++VS+N+++ G+
Sbjct: 353 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 412

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +                 N+K +E                        A  +F+E+   
Sbjct: 413 AK-----------------NLKSEE------------------------AFLLFNEIA-D 430

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             +    FTF S+LS  A +GAM  G QIH ++ K G K N  +  +LI MY++CGN++ 
Sbjct: 431 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 490

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF+ ++ R+V  W++MI GFA +G    AL++F +M E   KPN +T+  VL ACSH
Sbjct: 491 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 550

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G++ EG+  FN M   +G+VP ++HY CMVD+LGR+GLL EA+EFI  MP++  A VW 
Sbjct: 551 VGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWR 610

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LLGAC++H N EL  +A   +LE EP++  A +LLSN++A  G+W +V ++RK M+   
Sbjct: 611 TLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 670

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           L KE GCS IEV   +H+F  GE+SHP   +IY +LD++ +++K  GY+P+   +L  +E
Sbjct: 671 LIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIE 730

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE  +EQ L  HSE++A+A+GLIS   S+PIRI KNLRVCGDCHT  K IS    REI++
Sbjct: 731 EEQ-KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 789

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC DYW
Sbjct: 790 RDSNRFHHIKNGVCSCNDYW 809



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 202/412 (49%), Gaps = 70/412 (16%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQ 97
           L+K C   +N +  K +H +++++GL  D     +   L++ C        E AR +F+ 
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG-----DTETARLIFEG 86

Query: 98  IP-QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +  + +L +W+ ++  +++++   Q+   FL ++    ++PNE+ F  VI+A +      
Sbjct: 87  MGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML-ELGFYPNEYCFAAVIRACSNANYAW 145

Query: 157 VGQAIHGMVIKSSF-EDDLFISNSLIH-FYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           VG+ I+G V+K+ + E D+ +   LI  F    GDL  AY VF  + ++++V+W  MI+ 
Sbjct: 146 VGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITR 205

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G    AI+L+ +ME+    PD  T  +VLSAC                        
Sbjct: 206 FAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC------------------------ 241

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC---G 331
                              +LG + +G Q+H+++ + G+ L+  +  SL+DMY KC   G
Sbjct: 242 ------------------TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 283

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYG-CGREALDLFSRMQEAKVKPNAVTFTNVL 390
           ++D + +VF  +   +V  W+ +I  +   G C +EA++LF +M    ++PN  +F++VL
Sbjct: 284 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 343

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEA 438
            AC +      G   ++     Y V  G+    C    ++ M  R+G +++A
Sbjct: 344 KACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDA 390



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 51/321 (15%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           N+P  P+  T+  ++K+  R   F++G+ +H  +++S  E D  + N+LI  Y+ CGD  
Sbjct: 21  NAP--PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTE 78

Query: 192 MAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            A  +F  +G K+D+VSW++M+S F       +AI  + +M                   
Sbjct: 79  TARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM------------------- 119

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                LE G +PNE                  + F +V+ AC+      +G  I+  + K
Sbjct: 120 -----LELGFYPNE------------------YCFAAVIRACSNANYAWVGEIIYGFVVK 156

Query: 311 QG-IKLNCYLTTSLIDMYTK-CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            G ++ +  +   LIDM+ K  G+L  A +VF  +  R++  W+ MI  FA  GC R+A+
Sbjct: 157 TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAI 216

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           DLF  M+ +   P+  T+++VL AC+  GL+  G+   +++  + G+   V     +VDM
Sbjct: 217 DLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRL-GLALDVCVGCSLVDM 275

Query: 429 LGRA---GLLDEAVEFIEKMP 446
             +    G +D++ +  E+MP
Sbjct: 276 YAKCAADGSVDDSRKVFEQMP 296



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 16/185 (8%)

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           +L   +N  PD  T+  +L +C +     +G  +H K+ + G++L+  +  +LI +Y+KC
Sbjct: 15  DLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKC 74

Query: 331 GNLDKALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           G+ + A  +F  +   RD+  WS M++ FA      +A+  F  M E    PN   F  V
Sbjct: 75  GDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAV 134

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-------MVDMLGR-AGLLDEAVEF 441
           + ACS++     G       E +YG V    +          ++DM  + +G L  A + 
Sbjct: 135 IRACSNANYAWVG-------EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 187

Query: 442 IEKMP 446
            +KMP
Sbjct: 188 FDKMP 192


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 356/614 (57%), Gaps = 46/614 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+++C +  Q+KQ+   ++  G F    S +KL   CA+ +F  L YA  +F  IP P+ 
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPST 66

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             WN +IR  + S++P  +   +  +   N  +  +  T  F +KA AR +       +H
Sbjct: 67  NDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLH 126

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +++  F  D+ +  +L+  YA  GDL +A  +F  + + D+ SWN++I+GF QG    
Sbjct: 127 SQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSR-- 184

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                                                  P +A+  F  +++  N+ P+ 
Sbjct: 185 ---------------------------------------PADAIMTFKRMKVDGNLRPNA 205

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T    L AC+QLGA+  G  +H  + ++ +  N  +   +IDMY KCG++DKA  VF  
Sbjct: 206 VTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFEN 265

Query: 343 VK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           ++  + +  W+TMI  FAM+G G +ALDLF ++  + + P+AV++  VLCAC+H+GLV++
Sbjct: 266 MRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVED 325

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G   FN M    G+ P +KHY  MVD+LGRAG L EA + +  +P  P   +W  LLGAC
Sbjct: 326 GLKLFNSMTQ-RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGAC 383

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + + +VE+AE A   L+E+   + G  VLLSN+YA   +WD+V  +R  MR   +KK PG
Sbjct: 384 RTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPG 443

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S IE+ G+++KF+ G+ SH  C+EIY+KLDEI  R+K++GY  + S++L  + +ED +E
Sbjct: 444 FSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDED-KE 502

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            AL  HSE+LA+A+GL   E   PI+++KNLR+CGDCH V KLISK+Y REI++RDR RF
Sbjct: 503 NALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRF 562

Query: 642 HHFRGGNCSCMDYW 655
           H F+ G CSC DYW
Sbjct: 563 HRFKEGLCSCKDYW 576


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/693 (37%), Positives = 382/693 (55%), Gaps = 70/693 (10%)

Query: 26  TTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF 85
           + L   N   H      SLI    +  QLKQIH ++L  GL F  +  +KL    A  +F
Sbjct: 9   SPLLYTNSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSF 66

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFP 143
             + +AR++FD +P+P ++ WN +IR YS +     + +++  +QL   S   P+ FTFP
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS---PDSFTFP 123

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIG 201
            ++KA + L   ++G+ +H  V +  F+ D+F+ N LI  YA C  L  A  VF  + + 
Sbjct: 124 HLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLP 183

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++ +VSW +++S + Q G   +A+E++  M   +VKPD V +V+VL+A    +DL+ GR 
Sbjct: 184 ERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRS 243

Query: 262 PNEA-----LSIFHELQLSKNV-------------------NPDEFTFVSVLSACAQLGA 297
            + +     L I  +L +S N                    +P+   + +++S  A+ G 
Sbjct: 244 IHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGY 303

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLI--------------------------------- 324
               + +  +M  + ++ +    TS I                                 
Sbjct: 304 AREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSA 363

Query: 325 --DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
             DM+ KCG+++ A  VF     RDV VWS MI G+ ++G  REA+ L+  M+   V PN
Sbjct: 364 LIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPN 423

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            VTF  +L AC+HSG+V EG  FFN M   + + P  +HY C++D+LGRAG LD+A E I
Sbjct: 424 DVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVI 482

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           + MP+ PG +VWGALL ACK H +VEL EYA   L  ++P N G  V LSN+YA    WD
Sbjct: 483 KCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWD 542

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            V+E+R  M+  GL K+ GCS +EV G +  F  G+ SHP  +EI  +++ I +RLK  G
Sbjct: 543 RVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGG 602

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           +V N+   L  + +E+  E+ L  HSER+AIAYGLIS     P+RI KNLR C +CH   
Sbjct: 603 FVANKDASLHDLNDEEA-EETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAAT 661

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KLISKL +REI++RD  RFHHF+ G CSC DYW
Sbjct: 662 KLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/620 (40%), Positives = 364/620 (58%), Gaps = 18/620 (2%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIP 99
           V  ++++C ++ Q K++H Q+    L    Y  +KL     AL       Y R +F Q+ 
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            PN + W  LIRAY+    P+   + F   +      P  FTF  +  A A +    +G 
Sbjct: 71  TPNPFAWTALIRAYALRG-PLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGA 129

Query: 160 AIHGM-VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            +H   ++   F  DL+++N++I  Y  CG L  A  VF  + ++DV+SW  +I  + + 
Sbjct: 130 QLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRI 189

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G    A +L+  + ++    D VT  A+++  A+         P +AL +F  L+  + V
Sbjct: 190 GDMRAARDLFDGLPVK----DMVTWTAMVTGYAQNA------MPMDALEVFRRLR-DEGV 238

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIH--AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
             DE T V V+SACAQLGA      I   A+    G+  N  + ++LIDMY+KCGN+++A
Sbjct: 239 EIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEA 298

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  ++ R+VF +S+MI GFA++G  R A+ LF  M E  VKPN VTF  VL ACSH+
Sbjct: 299 YDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHA 358

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLVD+G+  F  ME  YGV P  + Y CM D+L RAG L++A++ +E MP+    +VWGA
Sbjct: 359 GLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGA 418

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA  +H N ++AE A   L ELEP+N G  +LLSN YA  G+WD+VS++RK +R   L
Sbjct: 419 LLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNL 478

Query: 517 KKEPGCSSIEV-NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           KK PG S +E  NG IHKF+AG+ SHP   EI  +L++++ RLK  GY PN S L   + 
Sbjct: 479 KKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGIN 538

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           + + +   L  HSE+LA+A+GL+S +    I+I+KNLR+C DCH V    SK+  R+I++
Sbjct: 539 DRE-KRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVV 597

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G CSC ++W
Sbjct: 598 RDNTRFHHFLNGACSCSNFW 617


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/568 (41%), Positives = 337/568 (59%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           + YA  +F     PNL+ WNT+IR YS S  PI +  ++  + +     PN +TF FV+ 
Sbjct: 17  VAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDM-FLCGISPNSYTFGFVLN 75

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A  +L++   GQ +H  ++K+  + +  + N LI  YA CG +  A  +F  + + D  S
Sbjct: 76  ACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSAS 135

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W++M+SG+ Q G   + ++L REM+                                   
Sbjct: 136 WSTMVSGYSQNGQAVETLKLLREMQ----------------------------------- 160

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                  ++NV+ D FT  SV+  C  LG +D+G  +H+ + K+G+K++  L T+L+ MY
Sbjct: 161 -------AENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMY 213

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG+LD AL+VF  +  RDV  WS MIAG+A++G   +AL LF  M+ +K+ PN VTFT
Sbjct: 214 SKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFT 273

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           +VL A SHSGLV++G   F  M   Y + P +KHY CMVD+  RAG++  A +FI+ MPI
Sbjct: 274 SVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPI 333

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W  LLGACK H    L E+    +L+L+P +    V +SN+YA  G+W +V ++
Sbjct: 334 EPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQV 393

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M+    KK+ G SSIE+N  +HKF+ GE SHP  ++IY  L ++  +LK  G+V + 
Sbjct: 394 RSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVAST 453

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++EE+ +E AL LHSERLAIAYGL+      PIRIVKNLR C DCH V KLIS+
Sbjct: 454 VDVLHDIDEEE-KEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISE 512

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +YNREI+LRDR  FHHFR   CSC DYW
Sbjct: 513 VYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 119/223 (53%), Gaps = 11/223 (4%)

Query: 42  FSLIKQCKNIK--QLKQIHTQMLRTGLFFDP---YSASKLFTPCALGTFSSLEYAREMFD 96
           F L   CK ++  + +++H+Q+++ GL F+        KL+  C       ++YA  MFD
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACG-----CMDYACVMFD 126

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P+P+  +W+T++  YS + + +++  +  ++   +    + FT   V+     L    
Sbjct: 127 EMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAEN-VSSDAFTLASVVGVCGDLGVLD 185

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ +H  + K   + D+ +  +L+  Y+ CG L  A  VF  + ++DV +W+ MI+G+ 
Sbjct: 186 LGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYA 245

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
             G  EKA++L+  M+   + P+ VT  +VLSA +    +E G
Sbjct: 246 IHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKG 288



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 10/134 (7%)

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G++  A  +F      ++F+W+T+I G+++      A+ L+  M    + PN+ TF  VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRAGLLDEAVEFIEKMP 446
            AC     + EG+   +Q+     V  G+   T     ++ +    G +D A    ++MP
Sbjct: 75  NACCKLLRLCEGQELHSQI-----VKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMP 129

Query: 447 IVPGASVWGALLGA 460
             P ++ W  ++  
Sbjct: 130 -EPDSASWSTMVSG 142


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/626 (40%), Positives = 365/626 (58%), Gaps = 51/626 (8%)

Query: 34  HQHHPH-PVFSLIKQCK-NIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEY 90
           H  HPH P ++L+ Q    +K L Q+H  ++ +G     +  +KL    CA G   S+ Y
Sbjct: 6   HHKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAG---SISY 62

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            R++F  +P P+ + + +LIR+ S      + S   + ++V  S   P+ +TF  VIK+ 
Sbjct: 63  TRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVL-SNVAPSNYTFTSVIKSC 121

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           A LV  R G+ IHG V+ + F  D+++  +L+ FY  CG L  A  VF  +  + VV+WN
Sbjct: 122 ADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWN 181

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           SMISG+ Q GF ++AI L+  M+                        E G  PN A    
Sbjct: 182 SMISGYEQNGFAKEAIRLFDRMK------------------------EIGVEPNSA---- 213

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                         TFVSVLSACA LGA  +G  +H      G+ LN  L TSLI+MYT+
Sbjct: 214 --------------TFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTR 259

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CGN+ KA EVF ++K R+V  W+ MI+G+   G G +A++LF  M+   + PN++TF  V
Sbjct: 260 CGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAV 319

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L AC+H+GLV+EGR  F  M   Y +VP V+H+ C+VDMLGRAGLLDEA  FI+++   P
Sbjct: 320 LSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEP 379

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
             ++W A+LGACK+H+N  L      H L  EP N    V+LSNIYA  G+ D V  +R 
Sbjct: 380 APAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRD 439

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
           +M    LKK+ G S+I+++ + + F  G+ SH    EIY  LD+++ + +  GYV     
Sbjct: 440 NMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDS 499

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           ++  +EEE  +E AL  HSE+LAIA+GL+       IRIVKNLR+C DCH+  K IS + 
Sbjct: 500 VMHELEEE-EREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVIS 558

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI++RD+ RFHHF+ G+CSC+DYW
Sbjct: 559 NREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 356/614 (57%), Gaps = 46/614 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+++C +  Q+KQ+   ++  G F    S +KL   CA+ +F  L YA  +F  IP P+ 
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPST 66

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             WN +IR  + S++P  +   +  +   N  +  +  T  F +KA AR +       +H
Sbjct: 67  NDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLH 126

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             +++  F  D+ +  +L+  YA  GDL +A  +F  + + D+ SWN++I+GF QG    
Sbjct: 127 SQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSR-- 184

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                                                  P +A+  F  +++  N+ P+ 
Sbjct: 185 ---------------------------------------PADAIMTFKRMKVDGNLRPNA 205

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T    L AC+QLGA+  G  +H  + ++ +  N  +   +IDMY KCG++DKA  VF  
Sbjct: 206 VTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFEN 265

Query: 343 VK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           ++  + +  W+TMI  FAM+G G +ALDLF ++  + + P+AV++  VLCAC+H+GLV++
Sbjct: 266 MRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVED 325

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G   FN M    G+ P +KHY  MVD+LGRAG L EA + +  +P  P   +W  LLGAC
Sbjct: 326 GLKLFNSMTQ-RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGAC 383

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + + +VE+AE A   L+E+   + G  VLLSN+YA   +WD+V  +R  MR   +KK PG
Sbjct: 384 RTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPG 443

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S IE+ G+++KF+ G+ SH  C+EIY+KLDEI  R+K++GY  + S++L  + +ED +E
Sbjct: 444 FSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDED-KE 502

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
            AL  HSE+LA+A+GL   E   PI+++KNLR+CGDCH V KLISK+Y REI++RDR RF
Sbjct: 503 NALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRF 562

Query: 642 HHFRGGNCSCMDYW 655
           H F+ G CSC DYW
Sbjct: 563 HRFKEGLCSCKDYW 576


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/576 (40%), Positives = 345/576 (59%), Gaps = 46/576 (7%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G    LE  R++FD +   +L TWN++I  +    +   +  +F  +  +S   P+  T 
Sbjct: 216 GKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGM-RDSGVSPDVLTL 274

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
             +  A A+      G+++H  +++  ++  D+   N+++  YA    +  A  +F  + 
Sbjct: 275 LSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +D VSWN++I+G++Q G                                          
Sbjct: 335 VRDAVSWNTLITGYMQNGL----------------------------------------- 353

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            +EA+ ++  +Q  + + P + TFVSVL A + LGA+  G ++HA   K G+ L+ Y+ T
Sbjct: 354 ASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGT 413

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            +ID+Y KCG LD+A+ +F     R    W+ +I+G  ++G G +AL LFS+MQ+  + P
Sbjct: 414 CVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + VTF ++L ACSH+GLVD+GR FFN M+  YG+ P  KHY CMVDM GRAG LD+A +F
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I  MPI P +++WGALLGAC+IH NVE+ + A  +L EL+P+N G  VL+SN+YAK GKW
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE--SSHPLCKEIYSKLDEIVARLK 559
           D V E+R  +R   L+K PG SSIEV   ++ F +G   + HP  +EI  +L +++A+++
Sbjct: 594 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIR 653

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           S GYVP+ S +LQ V EED +EQ LN HSERLAIA+G+I+  P  P+ I KNLRVCGDCH
Sbjct: 654 SLGYVPDYSFVLQDV-EEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCH 712

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              K ISK+  REI++RD  RFHHF+ G CSC D+W
Sbjct: 713 NATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 43/321 (13%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S I QC +I   + +H  M+R G       A            S +E A+ MFD +P  +
Sbjct: 279 SAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM-YAKLSKIEAAQRMFDSMPVRD 337

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             +WNTLI  Y  +    ++  ++  +  +    P + TF  V+ A + L   + G  +H
Sbjct: 338 AVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMH 397

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            + IK+    D+++   +I  YA CG L  A  +F    ++    WN++ISG    G   
Sbjct: 398 ALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGA 457

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           KA+ L+ +M+ E + PD VT V++L+AC+    ++ GR      + F+ +Q +  + P  
Sbjct: 458 KALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGR------NFFNMMQTAYGIKP-- 509

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              ++   AC                              ++DM+ + G LD A +    
Sbjct: 510 ---IAKHYAC------------------------------MVDMFGRAGQLDDAFDFIRN 536

Query: 343 VKSR-DVFVWSTMIAGFAMYG 362
           +  + D  +W  ++    ++G
Sbjct: 537 MPIKPDSAIWGALLGACRIHG 557



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 183/424 (43%), Gaps = 72/424 (16%)

Query: 107 NTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           NTLI A+S ++     +      L      P  P+ FTFP +++AA           +H 
Sbjct: 36  NTLISAFSRASLPRLALPLLRHLLLSSPLLPLRPDAFTFPPLLRAAQ---GPGTAAQLHA 92

Query: 164 MVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             ++      D F S +L+H Y   G +  AY  F  +  +DV +WN+M+SG  +     
Sbjct: 93  CALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAA 152

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSAC---------------AKKRDLEFGRWP-NEAL 266
           +A+ L+  M ME V  D VT+ +VL  C               A K  L+   +  N  +
Sbjct: 153 EAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMI 212

Query: 267 SIFHELQLSKNVNP--------DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI----- 313
            ++ +L + + V          D  T+ S++S   Q G +   V++   M+  G+     
Sbjct: 213 DVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVL 272

Query: 314 -------------------KLNCYLT------------TSLIDMYTKCGNLDKALEVFHT 342
                               ++CY+              +++DMY K   ++ A  +F +
Sbjct: 273 TLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDS 332

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDE 401
           +  RD   W+T+I G+   G   EA+ ++  MQ+ + +KP   TF +VL A SH G + +
Sbjct: 333 MPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQ 392

Query: 402 G-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           G RM  + +    G+   V   TC++D+  + G LDEA+   E+ P       W A++  
Sbjct: 393 GTRM--HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISG 449

Query: 461 CKIH 464
             +H
Sbjct: 450 VGVH 453


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/618 (40%), Positives = 361/618 (58%), Gaps = 55/618 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLF---FDPYSASKLFTPCALG-TFSSLEYAREMFDQI 98
           S+I++C  +  +KQ+   +L TG F     P S ++L   CAL  + + L YA  +   I
Sbjct: 6   SIIQKCTTLSHIKQVQAHLLTTGQFNLRISP-SRTRLLEHCALSPSPAYLPYAAHIHRHI 64

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P P+   +N L+R  +    P  + + FL  + +    P+  TF F + A+AR +     
Sbjct: 65  PHPSTNDFNALLRGLARGPHPTHA-LTFLSTILH----PDALTFSFSLIASARALALSET 119

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             IH  +++     D+ +  +LI  YA CGDL  A  VF  I  +DV +WN++I+G  QG
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQG 179

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
                                                       +EAL++F+ ++ ++  
Sbjct: 180 S-----------------------------------------KSSEALALFNRMR-AEGE 197

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             +E + +  L+AC+QLGA+  G  +HA ++K  + +N  +  ++IDMY KCG  DK   
Sbjct: 198 KINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFR 257

Query: 339 VFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           VF T+   + V  W+TMI  FAM+G G  AL+LF  M + +V+ ++VT+  VLCAC+H+G
Sbjct: 258 VFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAG 317

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG   F++M    GV   VKHY  +VD+LGRAG L EA   I  MPIVP   +W +L
Sbjct: 318 LVEEGVRLFDEMVG-RGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSL 376

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK + NVE+AE A   L+E+   + G  VLLSN+YA   +W++V  +R+ M+   ++
Sbjct: 377 LGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVR 436

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S IEV G IHKF+ G+ SHP  +EIY+KLDEI  R+K+FGYV   S +L  + EE
Sbjct: 437 KVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEE 496

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           D +E AL  HSE+LA+A+GLIS     PIR+ KNLR+CGDCH V KLISK+Y++EI++RD
Sbjct: 497 D-KENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRD 555

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFH F+ G+CSC DYW
Sbjct: 556 RARFHRFKDGSCSCRDYW 573


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 357/620 (57%), Gaps = 47/620 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + SL++ C ++++L +IH  +L  G   +P  + KL   CA+    SL YA+ +F +I  
Sbjct: 26  ILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 85

Query: 101 PNLYTWNTLIRAYSSSAEPIQ--SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P    WN++IR +S S  P+Q  + + +  ++  S   P+ +TF F++KA     +    
Sbjct: 86  PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC 145

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG +I+  ++ D+ +  +LI  YA  G +  A+ VF  +  +D+VSWNSMIS + Q 
Sbjct: 146 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 205

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E                                         EAL ++ ++++S NV
Sbjct: 206 GLHE-----------------------------------------EALKMYDQMRIS-NV 223

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             D FT VS+LS+CA +GA+ +GVQ+H    ++ +  N ++  +LIDMY KCG+L  AL 
Sbjct: 224 GFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALS 283

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F+++  RDVF W++MI G+ ++G G EA+  F  M  A V+PN++TF  +LC CSH GL
Sbjct: 284 IFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGL 343

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG  +F+ M   + + PG+KHY CMVD+ GRAG L EA+E I   P      +W  LL
Sbjct: 344 VKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 403

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           G+CKIH NVE+ E A  +L++L     G  VLLS IYA+      V+ +RK ++  G+K 
Sbjct: 404 GSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKT 463

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE--- 575
            PG S IEV  ++H+F+  + SHP  +EIY KL+E++ R    GY    S L+   E   
Sbjct: 464 TPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNT 523

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E   E + + HSE+LAIAYGL        + IVKNLRVC DCH   K +S  ++REI++
Sbjct: 524 QEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIV 583

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RDR RFHHF+GG+CSC ++W
Sbjct: 584 RDRVRFHHFKGGHCSCKEFW 603


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 357/620 (57%), Gaps = 47/620 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + SL++ C ++++L +IH  +L  G   +P  + KL   CA+    SL YA+ +F +I  
Sbjct: 8   ILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHN 67

Query: 101 PNLYTWNTLIRAYSSSAEPIQ--SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P    WN++IR +S S  P+Q  + + +  ++  S   P+ +TF F++KA     +    
Sbjct: 68  PQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC 127

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG +I+  ++ D+ +  +LI  YA  G +  A+ VF  +  +D+VSWNSMIS + Q 
Sbjct: 128 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 187

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E                                         EAL ++ ++++S NV
Sbjct: 188 GLHE-----------------------------------------EALKMYDQMRIS-NV 205

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             D FT VS+LS+CA +GA+ +GVQ+H    ++ +  N ++  +LIDMY KCG+L  AL 
Sbjct: 206 GFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALS 265

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F+++  RDVF W++MI G+ ++G G EA+  F  M  A V+PN++TF  +LC CSH GL
Sbjct: 266 IFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGL 325

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG  +F+ M   + + PG+KHY CMVD+ GRAG L EA+E I   P      +W  LL
Sbjct: 326 VKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLL 385

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           G+CKIH NVE+ E A  +L++L     G  VLLS IYA+      V+ +RK ++  G+K 
Sbjct: 386 GSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKT 445

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE--- 575
            PG S IEV  ++H+F+  + SHP  +EIY KL+E++ R    GY    S L+   E   
Sbjct: 446 TPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNT 505

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E   E + + HSE+LAIAYGL        + IVKNLRVC DCH   K +S  ++REI++
Sbjct: 506 QEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDREIIV 565

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RDR RFHHF+GG+CSC ++W
Sbjct: 566 RDRVRFHHFKGGHCSCKEFW 585


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/625 (38%), Positives = 358/625 (57%), Gaps = 61/625 (9%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQI 98
           IK C  +  L   KQ H Q L  G   D + +S L   ++ C       L  AR +FD+I
Sbjct: 89  IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG-----KLSNARVLFDEI 143

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE--------FTFPFVIKAAA 150
           P+ N+ TW +LI  Y  + +  ++ M+F + ++       E             V+ A +
Sbjct: 144 PRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACS 203

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           R+    V + +HG+ IK   +  + + N+L+  YA CG+++++  VF  + +KDVVSWNS
Sbjct: 204 RVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNS 263

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI+ + Q G                                            +A  +FH
Sbjct: 264 MIAVYAQNGL-----------------------------------------STDAFEVFH 282

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            +  +     +E T  ++L ACA  GA+ +G+ +H ++ K G   N  + TS+IDMY KC
Sbjct: 283 GMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKC 342

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G  + A   F  +K ++V  W+ MIAG+ M+G  REALD+F +M  A VKPN +TF +VL
Sbjct: 343 GQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVL 402

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSH+G ++EG  +FN M   Y V PGV+HY CMVD+LGRAG + EA   I+ M +   
Sbjct: 403 AACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRD 462

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +WG+LL AC+IH++VELAE +   L +L+P N G  VLL+NIYA  G+W +V  +R  
Sbjct: 463 FVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRIL 522

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           ++  GL K PG S +E+ G +H FL G+  HP  ++IY  L+E+  +L+  GYVPN + +
Sbjct: 523 VKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASV 582

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  V+EE+ +E  + +HSE+LA+A+G+++  P   I ++KNLRVCGDCHTV KLISK+ +
Sbjct: 583 LHDVDEEE-KEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVS 641

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHF+ G CSC DYW
Sbjct: 642 REIIVRDAKRFHHFKDGLCSCGDYW 666



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 51/202 (25%)

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           + DV SWNS+I+   +GG   +++  +  M   ++KP+  T    + +C+   DL  G+ 
Sbjct: 44  RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQ 103

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            ++   +F                                          G + + ++++
Sbjct: 104 AHQQALVF------------------------------------------GFESDLFVSS 121

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM------- 374
           +LIDMY+KCG L  A  +F  +  R++  W+++I G+       EAL +F          
Sbjct: 122 ALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEG 181

Query: 375 --QEAKVKPNAVTFTNVLCACS 394
             +E     ++V   +VL ACS
Sbjct: 182 NGEEVGTSVDSVAMISVLSACS 203


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 364/620 (58%), Gaps = 55/620 (8%)

Query: 42  FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMF 95
            S++  C   + L   K +H Q + TGL  D   A+   +++  C      S+E AR +F
Sbjct: 267 LSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCG-----SIEGARRVF 321

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++   ++ +W  +IR Y+ ++    +F +F  +       P+  T+  +I A A     
Sbjct: 322 DKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM-QEEGIQPDRITYIHIINACASSADL 380

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            + + IH  V+++ F  DL +  +L+H YA CG +  A  VF  + ++DVVSW++MI  +
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY 440

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+ G  E+A E +  M                     KR+                    
Sbjct: 441 VENGCGEEAFETFHLM---------------------KRN-------------------- 459

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            NV PD  T++++L+AC  LGA+D+G++I+ +  K  +  +  +  +LI+M  K G++++
Sbjct: 460 -NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIER 518

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F  +  RDV  W+ MI G++++G  REALDLF RM + + +PN+VTF  VL ACS 
Sbjct: 519 ARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +G V+EGR FF+ +    G+VP ++ Y CMVD+LGRAG LDEA   I +MP+ P +S+W 
Sbjct: 579 AGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWS 638

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL AC+I+ N+++AE A    L  EP +    V LS++YA  G W+NV+++RK M   G
Sbjct: 639 TLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 698

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++KE GC+ IEV G++H F+  + SHP   EIY++L  ++  +K  GY+P   ++L  V 
Sbjct: 699 VRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVG 758

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E++ +E+A++ HSE+LAIAYG++S+    PIRI KNLRVCGDCH+ +K ISK+  REI+ 
Sbjct: 759 EQE-KEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIA 817

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC DYW
Sbjct: 818 RDASRFHHFKNGVCSCGDYW 837



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 216/485 (44%), Gaps = 72/485 (14%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L ++C  ++     KQ+   ++++G   + Y  +   KL + C      ++  AR+ FD 
Sbjct: 67  LFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG-----NMLEARQTFDS 121

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +    + TWN +I  Y+      ++F +F Q+V +    P+  TF  V+ A +     ++
Sbjct: 122 VENKTVVTWNAIIAGYAQLGHVKEAFALFRQMV-DEAMEPSIITFLIVLDACSSPAGLKL 180

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+  H  VIK  F  D  I  +L+  Y   G +  A  VF  + K+DV ++N MI G+ +
Sbjct: 181 GKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAK 240

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  EKA +L+  M+ E  K                                        
Sbjct: 241 SGDGEKAFQLFYRMQQEGFK---------------------------------------- 260

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P+  +F+S+L  C+   A+  G  +HA+    G+  +  + T+LI MY  CG+++ A 
Sbjct: 261 --PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +K RDV  W+ MI G+A      +A  LF+ MQE  ++P+ +T+ +++ AC+ S 
Sbjct: 319 RVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSA 378

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            +   R   +Q+    G    +   T +V M  + G + +A +  + M      S W A+
Sbjct: 379 DLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVS-WSAM 436

Query: 458 LGACKIHENVELAEYACSHLLE---LEPE------------NHGALVLLSNIYAKTGKWD 502
           +GA  +        +   HL++   +EP+            + GAL L   IY +  K D
Sbjct: 437 IGA-YVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD 495

Query: 503 NVSEL 507
            VS +
Sbjct: 496 LVSHI 500



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 2/181 (1%)

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           A  + H L    N + D  T+V +   C  L    +G Q+   + + G +LN Y   +LI
Sbjct: 45  ANDVLHRLGEGSN-HIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLI 103

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            +++ CGN+ +A + F +V+++ V  W+ +IAG+A  G  +EA  LF +M +  ++P+ +
Sbjct: 104 KLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSII 163

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF  VL ACS    +  G+ F  Q+  V G V   +  T +V M  + G +D A +  + 
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKV-GFVSDFRIGTALVSMYVKGGSMDGARQVFDG 222

Query: 445 M 445
           +
Sbjct: 223 L 223


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/661 (37%), Positives = 362/661 (54%), Gaps = 74/661 (11%)

Query: 9   METLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           M +LS P     RH  P+ L  +   +HH              K    +H   +R GL  
Sbjct: 101 MRSLSVPP---NRHVFPSLLKASTLLKHH--------------KLAHSLHACTVRLGLDS 143

Query: 69  DPYSASKLFTPCA--------LGTF-----SSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           D Y A+ L    A           F     S ++  +++FD +P  ++ +WNT+I  ++ 
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +   +++  +  ++  N    P+ FT   ++   A  V    G+ IHG  +++ F+ D+F
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVF 263

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           I +SLI  YA C  L  +   F ++ +KD +SWNS+I+G VQ G F++            
Sbjct: 264 IGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDR------------ 311

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                                         L  F  + L +NV P   +F SV+ ACA L
Sbjct: 312 -----------------------------GLGFFRRM-LKENVKPMAVSFSSVIPACAHL 341

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A+ +G Q+H  + + G   N ++ +SL+DMY KCGN+  A  VF  +  RD+  W+ +I
Sbjct: 342 TALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAII 401

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
            G AM+G   +A+ LF  M E  V+P  V F  VL ACSH+GLVDEG  +FN ME  +G+
Sbjct: 402 MGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGI 461

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV-PGASVWGALLGACKIHENVELAEYAC 474
            PG++HY  + D+LGRAG L+EA +FI  M  V P  SVW  LL AC+ H++VELAE   
Sbjct: 462 APGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVL 521

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             LL ++ EN GA VL+SNIY+   +W + + LR HMR  GLKK P CS IEV  ++H F
Sbjct: 522 DKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTF 581

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           +AG+ SHP   +I   LD ++ +++  GYV + + +L  V+EE ++ + L+ HSERLAIA
Sbjct: 582 MAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEE-LKRELLHNHSERLAIA 640

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YG+IS      IR++KN+RVC DCHT  K I+K+  REI +RD  RFHHF+ G+CSC DY
Sbjct: 641 YGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDY 700

Query: 655 W 655
           W
Sbjct: 701 W 701



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 204/461 (44%), Gaps = 76/461 (16%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           N T  T++   +  P+   S+     + +Q KQ+H  +++T        +  +       
Sbjct: 3   NSTQHTISKILRKTPNKTLSV-----STRQAKQLHAHIVKTK---GTLHSDNILVLSLYS 54

Query: 84  TFSSLEYAREMFDQIPQPNLY-TWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFT 141
             + L+++  +F+ +P P     W+++I+ Y+S +    SF  F  +   S P  PN   
Sbjct: 55  NLNLLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVP--PNRHV 112

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           FP ++KA+  L   ++  ++H   ++   + DL+I+N+LI+ YA   +    + VF   G
Sbjct: 113 FPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRG 172

Query: 202 K---------------KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           +               +DVVSWN++I+GF Q G +                         
Sbjct: 173 ESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYV------------------------ 208

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                            EAL +  E+  +  + PD FT  S+L   A+   ++ G +IH 
Sbjct: 209 -----------------EALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG 251

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              + G   + ++ +SLIDMY KC  L+ +L  F+ +  +D   W+++IAG    G    
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDR 311

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
            L  F RM +  VKP AV+F++V+ AC+H   +  GR     +  + G        + +V
Sbjct: 312 GLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRL-GFDDNEFIASSLV 370

Query: 427 DMLGRAGLLDEA---VEFIEKMPIVPGASVWGALLGACKIH 464
           DM  + G +  A    + I+K  +V     W A++  C +H
Sbjct: 371 DMYAKCGNIKMARYVFDRIDKRDMVA----WTAIIMGCAMH 407


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/592 (41%), Positives = 357/592 (60%), Gaps = 55/592 (9%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           +HT ++++G   D Y  + L    A G    L  A+++F      ++ +WN +I  Y   
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANG--KDLGAAKQLFSLCSDRDVVSWNAMIDGYVKR 79

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
            E   + M+F ++V                                          D+  
Sbjct: 80  GEMGHTRMVFDRMVCR----------------------------------------DVIS 99

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N++I+ YAI G +  A  +F  + ++++VSWNSM+SGFV+ G  E+A  L+ EM   +V
Sbjct: 100 WNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDV 159

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                +M+A  + C K         PNEAL++F +++ +  V P E T VS+LSACA LG
Sbjct: 160 VSWN-SMLACYAQCGK---------PNEALALFDQMR-AVGVKPTEATVVSLLSACAHLG 208

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           A+D G+ +H  +    I++N  + T+L+DMY KCG +  A +VF+ ++S+DV  W+T+IA
Sbjct: 209 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 268

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           G A++G  +EA  LF  M+EA V+PN +TF  +L ACSH+G+VDEG+   + M   YG+ 
Sbjct: 269 GMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIE 328

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P V+HY C++D+L RAGLL+EA+E I  MP+ P  S  GALLG C+IH N EL E     
Sbjct: 329 PKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKR 388

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           L+ L+P + G  +LLSNIYA   KWD+  ++R  M+V+G+ K PG S IE+ G +H+F+A
Sbjct: 389 LINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 448

Query: 537 GESSHPLCKEIYSKLDEIVARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
           G+ SHP   +IY KL+EI  RLKS  GY  +  ++L  +EEED +E AL +HSE+LAIAY
Sbjct: 449 GDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEED-KEHALAVHSEKLAIAY 507

Query: 596 GLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           GL+ ++  + IRIVKNLRVC DCH V KLISK+Y REI++RDR RFHHF  G
Sbjct: 508 GLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/563 (41%), Positives = 358/563 (63%), Gaps = 14/563 (2%)

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +  Q P  ++ +W +LI AYS +    ++   F  ++ +    P+E T   V+ A A+L 
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG-IAPDEVTVIAVLSACAKLK 253

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMI 212
              +G+++H +V +        +  +LI  YA CGD   A  VF  +G+     SWN++I
Sbjct: 254 DLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAII 313

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+ + G  + A  L+ EME+ ++    +T  ++++       L       EAL +F  +
Sbjct: 314 DGYCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLR------EALLLFMSM 363

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +   ++  D FT V++L+ACA LGA+  G  +HA ++++ ++ + YL T+L+DMY KCG 
Sbjct: 364 R-RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGR 422

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +D+A  VF  +  RDV  W+ MIAG A  G G+ AL+ F +M+    +PN+V++  VL A
Sbjct: 423 VDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTA 482

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSHS L++EGR++F++M  +Y + P ++HY CM+D+LGR+GLLDEA++ ++ MPI P A 
Sbjct: 483 CSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAV 542

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W ++L AC++H++++LA+ A  HLL+LEP+  G  V L NIY  + +W+N S++R  M 
Sbjct: 543 IWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLME 602

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              +KK  G SSI V G++HKF+  + SHP   EI + L+EI  RLKS GY P  S +  
Sbjct: 603 ERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITV 662

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            V+EE+ +EQAL  HSE+LAIA+GLI++ P+ P+ I KNLRVC DCH+  KLIS+L+NRE
Sbjct: 663 DVDEEE-KEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNRE 721

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFHHFR G CSC D+W
Sbjct: 722 IIVRDRSRFHHFREGTCSCNDFW 744



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 205/437 (46%), Gaps = 53/437 (12%)

Query: 49  KNIKQLKQIHTQMLRTG-LFFDPYSASKLFTP---CALGTFSSLEYAREMFDQIPQPNLY 104
           + ++Q  ++H ++  +G L   P SA  L      C       L YA  +FD++P P+ +
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTF 68

Query: 105 TWNTLIRAYS-SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK---AAARLVQFRVGQA 160
            ++T +RA S + ++P + F++F ++   +   P+ FTF F+ K   +++R     +   
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRM-RRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTM 127

Query: 161 IHGMVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +H   +++       F+SNSLIH Y   G  A A   F  I  KD V+W  +ISG  + G
Sbjct: 128 LHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMG 187

Query: 220 FF-------------------------------EKAIELYREMEMENVKPDEVTMVAVLS 248
                                             +A+  ++ M    + PDEVT++AVLS
Sbjct: 188 MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLS 247

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK +DLE GR         H L   K +   E   V+++   A+ G      Q+   +
Sbjct: 248 ACAKLKDLELGR-------SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDAL 300

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G +   +   ++ID Y K G++D A  +F  ++ RD+  +++M+ G+   G  REAL
Sbjct: 301 GR-GPRPQSW--NAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
            LF  M+   ++ +  T  N+L AC+  G + +GR     +E    V   +   T ++DM
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL-VEADIYLGTALLDM 416

Query: 429 LGRAGLLDEAVEFIEKM 445
             + G +DEA    ++M
Sbjct: 417 YMKCGRVDEATIVFQRM 433



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T LI    K G L     +      RDV  W+++IA ++     REA+  F  M    + 
Sbjct: 177 TMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIA 236

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P+ VT   VL AC+    ++ GR     +E   G+         ++DM  + G    A +
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRSLHLLVEE-KGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 441 FIEKMPIVPGASVWGALL-GACKIHENVELAE 471
             + +   P    W A++ G CK H +V++A 
Sbjct: 296 VFDALGRGPRPQSWNAIIDGYCK-HGHVDVAR 326


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 370/619 (59%), Gaps = 21/619 (3%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFD 96
           P+   + + K++ +  +IH    + G   DP+  +   +++  C       +  AR MFD
Sbjct: 127 PLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACG-----RIAEARLMFD 181

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++   ++ TW+ +I  Y  S     + ++F ++  N    P+E     V+ A  R     
Sbjct: 182 KMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEM-KNYNVEPDEMMLSTVLSACGRAGNLS 240

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH  +++++   D  + ++L+  YA CG + +A  +F  +  K++V+  +M++G+ 
Sbjct: 241 YGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYS 300

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  E A  ++ +M    VK D V   A++S  A+         P EAL++F+E+Q S 
Sbjct: 301 KLGQIENARSVFNQM----VKKDLVCWSAMISGYAESDS------PQEALNLFNEMQ-SL 349

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + PD+ T +SV++ACA LGA+D    IH  + K G      +  +LI+MY KCG+L++A
Sbjct: 350 GIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERA 409

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  ++V  W+ MI+ FAM+G    AL  F +M++  ++PN +TF  VL ACSH+
Sbjct: 410 RRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHA 469

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EGR  F  M   + + P   HY CMVD+ GRA LL EA+E +E MP+ P   +WG+
Sbjct: 470 GLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGS 529

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           L+ AC++H  +EL E+A   LLEL+P++ GA V LSNIYAK  +W++V ++RK M+  G+
Sbjct: 530 LMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGI 589

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
            KE GCS  E+N EIH+FL  + SH    EIY KL E+V++LK  GY PN   +L +  E
Sbjct: 590 SKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSIL-VDLE 648

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +++ +  HSE+LA+ YGL+       IRI+KNLRVC DCHT  KL SK+Y REI++R
Sbjct: 649 EEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVR 708

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR RFHH++ G CSC DYW
Sbjct: 709 DRTRFHHYKDGVCSCKDYW 727



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 238/452 (52%), Gaps = 24/452 (5%)

Query: 36  HHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL-FTPCALGTFSSLEYAREM 94
           H  H +FS +    ++  LKQ+H Q+LR+ L        KL  + CAL   SSL+YA  +
Sbjct: 21  HSHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALS--SSLDYALSV 78

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ IP+P  +  N  +R  S S EP ++ +++ + +       + F+FP ++KA +R+  
Sbjct: 79  FNLIPKPETHLCNRFLRELSRSEEPEKTLLVY-ERMRTQGLAVDRFSFPPLLKALSRVKS 137

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G  IHG+  K  F+ D F+   L+  YA CG +A A  +F  +  +DVV+W+ MI G
Sbjct: 138 LVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDG 197

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G F  A+ L+ EM+  NV+PDE+ +  VLSAC +  +L +G+       + H+  +
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGK-------MIHDFIM 250

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
             N+  D     ++++  A  G+MD+ + +  KM  +    N   +T+++  Y+K G ++
Sbjct: 251 ENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPK----NLVASTAMVTGYSKLGQIE 306

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  VF+ +  +D+  WS MI+G+A     +EAL+LF+ MQ   +KP+ VT  +V+ AC+
Sbjct: 307 NARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACA 366

Query: 395 HSGLVDEGRM--FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           H G +D+ +    F       G +P       +++M  + G L+ A    +KMP     S
Sbjct: 367 HLGALDQAKWIHLFVDKNGFGGALPI---NNALIEMYAKCGSLERARRIFDKMPRKNVIS 423

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPEN 484
            W  ++ A  +H +   A  A     ++E EN
Sbjct: 424 -WTCMISAFAMHGD---AGSALRFFHQMEDEN 451


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/618 (40%), Positives = 349/618 (56%), Gaps = 51/618 (8%)

Query: 43  SLIKQCKNIK--QLKQIHTQMLRTGLFFDPYS--ASKLFTPCALGTFSSLEYAREMFDQI 98
           S + +C  +     KQ+H  +  TG F  P S   SKL    AL +  +L +A   F QI
Sbjct: 7   SFLSKCTTLSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYAL-SLGNLSFAILTFSQI 65

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             P+   WN +IR +  S  P  +F  +  ++  S    +  T  FV+KA AR++     
Sbjct: 66  RTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKV-DALTCSFVLKACARVLARLES 124

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             IH  +++  F  D  +  +L+  YA  G++  A  VF  + K+D+ SWN++ISGF QG
Sbjct: 125 IQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
                                                      P EALS+F  +++    
Sbjct: 185 SK-----------------------------------------PTEALSLFKRMEID-GF 202

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P+E + +  LSACAQLG    G +IH  +K +   +N  +   +IDMY KCG +DKA  
Sbjct: 203 KPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYL 262

Query: 339 VFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           VF ++  R D+  W+TMI  FAM+G G +AL+LF +M ++ V P+ V++  VLCAC+H G
Sbjct: 263 VFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGG 322

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG   FN ME   GV P VKHY  +VD+LGRAG L EA + +  MP VP   +W  L
Sbjct: 323 LVEEGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTL 381

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGA + H NVE+AE     L+E+   + G  VLLSN+YA   +W +V  +R+ M+   +K
Sbjct: 382 LGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVK 441

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S IE NG IHKF   + SH   +EIY+KLDEI  R+K +GYV   S +L  + EE
Sbjct: 442 KVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEE 501

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           D +E  L  HSE+LA+A+GLIS     PI+++KNLR+CGDCH V KLISK+Y+REI++RD
Sbjct: 502 D-KENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRD 560

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFH F+ G CSC DYW
Sbjct: 561 RVRFHRFKEGFCSCRDYW 578


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/645 (39%), Positives = 370/645 (57%), Gaps = 70/645 (10%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIK--QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           NN  QH  H    L+ +   I   QLKQIH Q LRT     P +A  L+T   L  +SSL
Sbjct: 17  NNQSQHLIH----LLNEPTTITMPQLKQIHAQTLRTVNSNHP-NAIFLYTN-ILQHYSSL 70

Query: 89  E-----YAREMFDQIPQPNLYTWNTLIRAYSSSA------EPIQSFMIFLQLVYNSPYFP 137
                 YA  +F   P PN + WNTLIR Y+ S       + ++ +   + +   +   P
Sbjct: 71  TQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTA-VP 129

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           +  TFP V+KA A       G+ +H  V+K  FE D +I NSL+HFYA CG L +A  +F
Sbjct: 130 DNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMF 189

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             + +++ VSWN MI  + +GG F+ A+ ++ E  M+ V                     
Sbjct: 190 YKMSERNEVSWNIMIDSYAKGGIFDTALRMFGE--MQRVH-------------------- 227

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-- 315
                                +PD +T  SV+SACA LGA+ +G+ +HA + K+  K   
Sbjct: 228 ---------------------DPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMV 266

Query: 316 -NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            +  + T L+DMY K G L+ A +VF ++  RD+  W++MI G AM+G  + AL+ + RM
Sbjct: 267 DDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRM 326

Query: 375 QEA-KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
            +  K+ PN++TF  VL AC+H G+VDEG + F+ M   Y V P ++HY C+VD+  RAG
Sbjct: 327 VKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAG 386

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELEPE--NHGALVL 490
            ++EA+  + +M I P A +W +LL AC K + +VEL+E     + E E    + G  VL
Sbjct: 387 RINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVL 446

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           LS +YA   +W++V  LRK M   G+ KEPGCS IE++G +H+F AG+++HP  + IY  
Sbjct: 447 LSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKV 506

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           + EI  +L+S GY+P+ S    + E  D +   L LHSERLAIA+G+++ +P  PIR+ K
Sbjct: 507 VTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFK 566

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLRVC DCH V KLIS++YN EI++RDR RFHHF+ G CSCMDYW
Sbjct: 567 NLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 365/624 (58%), Gaps = 56/624 (8%)

Query: 38  PHPVFSLIKQCKNIKQL---KQIHTQMLRT---GLFFDPYSASKLFTPCALGTFSSLEYA 91
           P    SLI  C   + L   + IH  +  +   G  F   S   L+  C      ++  A
Sbjct: 64  PRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCG-----AVADA 118

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R +FD +P  ++ +W +LI  Y+ +  P ++  +   ++    + PN FTF  ++KAA  
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGA 177

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                +G+ IH + +K  + DD+++ ++L+  YA CG + MA  VF  +  K+ VSWN  
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWN-- 235

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
                                            A+++  A+K D E        L +F E
Sbjct: 236 ---------------------------------ALIAGFARKGDGE------TTLLMFAE 256

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +Q         FT+ SV SA A +GA++ G  +HA M K G +L+ ++  +++DMY K G
Sbjct: 257 MQ-RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           ++  A +VF  V  +DV  W++M+  FA YG GREA+  F  M++  V  N +TF ++L 
Sbjct: 316 SMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH GLV EG+ +F+ M+  Y + P + HY  +VD+LGRAGLL++A+ FI KMP+ P A
Sbjct: 376 ACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           +VWGALLG+C++H+N ++ ++A  H+ EL+P++ G  VLL NIYA TG+WD  + +RK M
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           + +G+KKEP CS +E+   +H F+A + +HP  +EIY K +EI  +++  GYVPN  ++L
Sbjct: 495 KATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVL 554

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V+E++ Q + L  HSE++A+A+ LI++     IRI+KN+R+CGDCH+  + ISK++ R
Sbjct: 555 LHVDEQERQAK-LQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKR 613

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD  RFHHF  G+CSC DYW
Sbjct: 614 EIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 363/618 (58%), Gaps = 46/618 (7%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           P    S + +C+NI Q+KQ+H Q+  TG+  D   A+KL   CA      L  A  +F++
Sbjct: 3   PDFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCA--KHKDLVTAHLLFNK 60

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + +  +W+ +I  +  + +  + F  F +L+  +   P+ F+ PFVIKA    +   +
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELI-RAGSKPDNFSLPFVIKACRDTMGLIM 119

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  V+K+    D F+ ++L+  YA CG +  A  +F  + KKD+V+   MI+G+ +
Sbjct: 120 GRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAE 179

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                                           C K         PNE+  +F +++    
Sbjct: 180 --------------------------------CGK---------PNESWVLFDQMRRDGF 198

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD+   V++++ACA+LGAM+    +H  +  +   L+  L T++IDMY KCG++D + 
Sbjct: 199 V-PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSR 257

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           E+F  ++ ++V  WS MI  +  +G GREAL+LF  M  + + PN +TF ++L ACSH+G
Sbjct: 258 EIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAG 317

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVD+G   F+ M   YGV P VKHYTCMVD+LGRAG LD+A+  IE M +     +W A 
Sbjct: 318 LVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAF 377

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+IH  V+LAE A   LL L+ +N G  +LLSNIYA  G+W +V+++R  M    LK
Sbjct: 378 LGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLK 437

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG + IEV+  I++F AG++SH    EIY  L  +  +L+S GYVP+ + +L  V+EE
Sbjct: 438 KIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEE 497

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            V+   L+ HSE+LAIA+GLI+     PIRI KNLRVCGDCH+  KL+S +  R+I++RD
Sbjct: 498 -VKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRD 556

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 557 ANRFHHFKEGICSCGDYW 574


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 353/618 (57%), Gaps = 50/618 (8%)

Query: 42  FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            S++  C   K L   K IH+ +   G   D    + L +  A      L  ARE+F  +
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYA--RCGDLPKARELFYTM 391

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ +L +WN +I  Y+   +  ++  ++ Q+  +    P   TF  ++ A A    +  G
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH  +++S  + +  ++N+L++ Y  CG L  A  VF     +DV+SWNSMI+G  Q 
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G +E A +L++EM+                              NE L            
Sbjct: 511 GSYETAYKLFQEMQ------------------------------NEELE----------- 529

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TF SVLS C    A+++G QIH ++ + G++L+  L  +LI+MY +CG+L  A  
Sbjct: 530 -PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSG 397
           VFH+++ RDV  W+ MI G A  G   +A++LF +MQ    +P +  TFT++L AC+H+G
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAG 648

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV EG   F+ ME  YGV+P ++HY C+V +LGRA    EA   I +MP  P A+VW  L
Sbjct: 649 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 708

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+IH N+ LAE+A ++ L+L   N    +LLSN+YA  G+WD+V+++R+ M   G++
Sbjct: 709 LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 768

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPG S IEV+  IH+F+A + SHP   EIY++L  +   ++  GY P+  H+L  + + 
Sbjct: 769 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 828

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             QE +L  HSERLAIAYGLI   P  PIRI KNLR+CGDCHT +K ISKL  REI+ RD
Sbjct: 829 H-QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 887

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFH F+ G CSC DYW
Sbjct: 888 SNRFHSFKNGKCSCEDYW 905



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 244/543 (44%), Gaps = 94/543 (17%)

Query: 21  RHPNPTTLTVNNGHQHHPHPV-----FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYS 72
           RH  P    V+N HQ  P         +L++ C   + L   K+IH QM+  G+  D + 
Sbjct: 5   RHCGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFL 64

Query: 73  AS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
           ++    ++  C      S+  A ++F ++P+ ++ +WN+LI  Y+      ++F +F ++
Sbjct: 65  SNLLINMYVKC-----RSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
             N+ + PN+ T+  ++ A     +   G+ IH  +IK+ ++ D  + NSL+  Y  CGD
Sbjct: 120 -QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A  VF  I  +DVVS+N+M+  + Q  + ++ + L+ +M  E + PD+VT + +L A
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI----- 304
                 L+ G+         H+L + + +N D     ++++ C + G +D   Q      
Sbjct: 239 FTTPSMLDEGKR-------IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA 291

Query: 305 --------------------------HAKMKKQGIKLN--CYLT---------------- 320
                                     + +M+  G+ LN   YL+                
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 321 -----------------TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
                             +LI MY +CG+L KA E+F+T+  RD+  W+ +IAG+A    
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
             EA+ L+ +MQ   VKP  VTF ++L AC++S    +G+M    +    G+        
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLAN 470

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL--ELE 481
            +++M  R G L EA    E        S W +++     H + E A      +   ELE
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 482 PEN 484
           P+N
Sbjct: 530 PDN 532


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 359/613 (58%), Gaps = 54/613 (8%)

Query: 50  NIKQLKQIHTQMLRTGL-FFDPYSASKLFTPCALGTFSSLEYAREMFDQI-PQPNL--YT 105
           ++   KQIH + LR G+    P  A  L    A      L YA  +  ++ P   L  + 
Sbjct: 27  SLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFP 86

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            NT++R  + S  P     + L+L       P+  T+P +I+A ARL+  R G+ +H   
Sbjct: 87  LNTVLRIAAGSPRP----RVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEA 142

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEK 223
            K+ F   +F+ NSL+H Y  CG    A+ VF  + +  +++VSWNSM++ F   G    
Sbjct: 143 AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR--- 199

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
                                                 PNE L++F E+ L  +  PD F
Sbjct: 200 --------------------------------------PNEVLTVFWEM-LGVDFAPDGF 220

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T VSVL+ACA+ GA+ +G ++H  ++K G+  N +++ +LID+Y KCG+++ A  +F  +
Sbjct: 221 TIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM 280

Query: 344 K-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              R V  W+++I G A  G G+EAL+LFS M+  K+ P  +T   VL ACSH GLVD+G
Sbjct: 281 GLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDG 340

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
             +F++M+  YG+ P ++H  CMVD+LGRAG ++EA ++I  MP+ P A VW  LLG+C 
Sbjct: 341 FRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCA 400

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           +H+ +EL + A   L+EL+P + G  VLLSN+YA  G W +V  LRK M    ++K PG 
Sbjct: 401 MHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGH 460

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S +E+   +++F+ G+ SHP  ++IY  L EI  RL+  GY+P  S++L  +EEE+ +E 
Sbjct: 461 SLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEE-KET 519

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           ALN HSERLAIA+ L+   P  PIRI+KNLR+CGDCH    LISK+Y+REI++RDR RFH
Sbjct: 520 ALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFH 579

Query: 643 HFRGGNCSCMDYW 655
           HF+GG CSC DYW
Sbjct: 580 HFQGGACSCKDYW 592


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/565 (41%), Positives = 343/565 (60%), Gaps = 51/565 (9%)

Query: 99  PQPNLYTWNTLIRAY-SSSAEPI----QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           P    + WNTLIRA+  + A+P         IF+++ ++    P+  TFPF++++ A   
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQ-PDFHTFPFLLQSFASPS 78

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
              +G+++H  +++     D F+  SLI  Y+  G + MA  +F ++ +++V+SW+ MI+
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMIN 138

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+V+ G ++                                         EAL++F E+Q
Sbjct: 139 GYVRCGQYK-----------------------------------------EALALFREMQ 157

Query: 274 L--SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +    +V P+EFT   VL+AC +LGA++ G   HA + K G+ ++  L T+LIDMY KCG
Sbjct: 158 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 217

Query: 332 NLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           +++KA  VF  +  ++DV  WS MI+G AM+G   E + LFS+M    V+PNAVTF  V 
Sbjct: 218 SVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVF 277

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           CAC H GLV EG+ +  +M   Y ++P ++HY CMVD+ GRAG + EA   ++ MP+ P 
Sbjct: 278 CACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPD 337

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALL   ++H ++E  E A   L+ELEP N GA VLLSN+YAK G+W++V  +R  
Sbjct: 338 VLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDL 397

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G+KK PGCS IEV G +H+F  G+ SHP  ++I+  L+EI+ RLK  GYV N   +
Sbjct: 398 METMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEV 457

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  ++EE  +E AL+LHSE+LA+AYG +   P  PIRIVKNLR+C DCH   K+ISK+++
Sbjct: 458 LLDLDEEG-KELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFD 516

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHF  G CSC DYW
Sbjct: 517 REIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 140/312 (44%), Gaps = 47/312 (15%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + +H Q+LR GL  DP+  + L +     +   ++ AR +F  +P+ N+ +W+ +I  Y 
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLIS--MYSSSGLVDMARNLFAVMPERNVISWSCMINGYV 141

Query: 115 SSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
              +  ++  +F  +Q++  +   PNEFT   V+ A  RL     G+  H  + K     
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV 201

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           D+ +  +LI  YA CG +  A  VF  +G  KDV++W++MISG    G  E+ + L+ +M
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 261

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
             + V+P+ VT +AV  AC     +  G+               + +  D     S++  
Sbjct: 262 INQGVRPNAVTFLAVFCACVHGGLVSEGK------------DYLRRMTED----YSIIPT 305

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFV 350
               G M                         +D+Y + G + +A  V  ++    DV V
Sbjct: 306 IQHYGCM-------------------------VDLYGRAGRIKEAWNVVKSMPMEPDVLV 340

Query: 351 WSTMIAGFAMYG 362
           W  +++G  M+G
Sbjct: 341 WGALLSGSRMHG 352


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/634 (39%), Positives = 374/634 (58%), Gaps = 19/634 (2%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLI-KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           PNP + + ++  +     + SL+ K  KN K ++ IH   ++T    DP+ A +L     
Sbjct: 14  PNPHSSSHDSNLRR---VIISLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLR--V 68

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
               + +++A ++F     PN+Y + +LI  + S      +  +F Q+V       + + 
Sbjct: 69  YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMV-RKHVLADNYA 127

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++KA         G+ +HG+V+KS    D  I+  L+  Y  CG L  A  +F  + 
Sbjct: 128 VTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMP 187

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++DVV+   MI      G  E+AIE++ EM       D V    V+      R+ EF   
Sbjct: 188 ERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTR----DTVCWTMVIDGLV--RNGEF--- 238

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            N  L +F E+Q+ K V P+E TFV VLSACAQLGA+++G  IHA M+K G+++N ++  
Sbjct: 239 -NRGLEVFREMQV-KGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAG 296

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY++CG++D+A  +F  V+ +DV  +++MI G A++G   EA++LFS M + +V+P
Sbjct: 297 ALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRP 356

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N +TF  VL ACSH GLVD G   F  ME ++G+ P V+HY CMVD+LGR G L+EA +F
Sbjct: 357 NGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDF 416

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I +M +     +  +LL ACKIH+N+ + E     L E    + G+ ++LSN YA  G+W
Sbjct: 417 IGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRW 476

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
              +E+R+ M   G+ KEPGCSSIEVN  IH+F +G+  HP  K IY KL+E+    K  
Sbjct: 477 SYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFE 536

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY+P     L  +++E  +E AL +HSERLAI YGL+S E    +R+ KNLR+C DCH +
Sbjct: 537 GYLPATEVALHDIDDEQ-KELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAM 595

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KLI+K+  R+I++RDR RFHHF  G CSC DYW
Sbjct: 596 IKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/634 (37%), Positives = 366/634 (57%), Gaps = 52/634 (8%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCA 81
           PTT   N  H    H +  L  + K + Q K  H Q+L  GL  D  +++    +++ C 
Sbjct: 54  PTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCG 113

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                S+++AR++FD++P  +L +WNT+I + + + E  ++  + LQ+      F +EFT
Sbjct: 114 -----SVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF-SEFT 167

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A A        Q +H   IK++ + ++F++ +L+  YA CG +  A CVF  + 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            + VV+W+SM +G+VQ   +E+A+ L+R+                              W
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKA-----------------------------W 258

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                           +  D+F   SV+ ACA L AM  G Q++A + K G   N ++ +
Sbjct: 259 ET-------------GLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVAS 305

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SLIDMY KCG ++++ +VF  V+ R+V +W+ MI+G + +    E + LF +MQ+  + P
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP 365

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N VTF +VL AC H GLV +G+ +F+ M   + + P V HY+CMVD L RAG + EA + 
Sbjct: 366 NDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDL 425

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I K+P    AS+WG+LL +C+ H N+ELAE A   L ++EP N G  +LLSN+YA  GKW
Sbjct: 426 ISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKW 485

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           D V+++RK ++ S +KKE G S IE+  ++H F+ GE +HP   EIYSKL+E++  L+  
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY     H L  V  E ++++ L  HSE+LA   GL+ + P+ PIRI+KNLR+CGDCH+ 
Sbjct: 546 GYKVETQHDLHQV-GESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KL SK + R++++RD  RFHHF+ G CSC D+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 356/607 (58%), Gaps = 54/607 (8%)

Query: 56  QIHTQMLRTGLF-FDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           Q+H   LR+GLF  DPYSAS L   +  C     S    AR  FD+IP PN      +  
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHC-----SRPMDARRAFDEIPDPNPVIVTAMAS 168

Query: 112 AYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            Y  +     S  +F  ++  +S    +E        A+AR+    V  ++H ++ K  F
Sbjct: 169 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 228

Query: 171 EDDLFISNSLIHFYAICG--DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           E +  + N+++  YA  G  DL +A  VF  + ++DVVSWNSMI+ + Q G   +AI LY
Sbjct: 229 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 287

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            +M                                        L +   +  +     +V
Sbjct: 288 SKM----------------------------------------LNVGGGIKCNAVALSAV 307

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L ACA  GA+  G +IH ++ + G++ N Y+ TS++DMY+KCG ++ A   F  +K +++
Sbjct: 308 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 367

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             WS MI G+ M+G G+EAL++F+ M+ + ++PN +TF +VL ACSH+GL+DEGR ++N 
Sbjct: 368 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 427

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M+  +G+  GV+HY CMVD+LGRAG LDEA   I++M + P A++WGALL AC+IH+NVE
Sbjct: 428 MKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVE 487

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE +   L EL+  N G  VLLSNIYA+   W +V  +R  ++   ++K PG SS E+ 
Sbjct: 488 LAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELK 547

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
           G+I+ F  G+ SHP   EIYS L++++ R++  GYVPN   +L  ++EE+ +E AL +HS
Sbjct: 548 GKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEE-KESALRIHS 606

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           E+LA+A+ L++  P   I I+KNLRVC DCHT  K I+K+  REI++RD  RFHHF+ G 
Sbjct: 607 EKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGL 666

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 667 CSCRDYW 673


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/615 (39%), Positives = 365/615 (59%), Gaps = 50/615 (8%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSA--SKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           + +++ +  Q+H Q+++ G+     S   SK+FT  AL  F  L YAR +    P  N Y
Sbjct: 2   EVRSMWEALQVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSY 61

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            +NTL+RA+S +  P   F   L L  + P  P+ FTFPF++K  +R     +G+ +H +
Sbjct: 62  YYNTLLRAFSQTPLPTPPFHA-LSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHAL 120

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           + K  F  DL+I N L+H Y+  GDL +A  +F  +  +DVVSW SMI G V        
Sbjct: 121 LTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVN------- 173

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
                                         DL     P EA+++F E  L   V  +E T
Sbjct: 174 -----------------------------HDL-----PVEAINLF-ERMLQCGVEVNEAT 198

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY--LTTSLIDMYTKCGNLDKALEVFHT 342
            +SVL ACA  GA+ +G ++HA +++ GI+++    ++T+L+DMY K G +  A +VF  
Sbjct: 199 VISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDD 258

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           V  RDVFVW+ MI+G A +G  ++A+D+F  M+ + VKP+  T T VL AC ++GL+ EG
Sbjct: 259 VVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREG 318

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
            M F+ ++  YG+ P ++H+ C+VD+L RAG L EA +F+  MPI P   +W  L+ ACK
Sbjct: 319 FMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACK 378

Query: 463 IHENVELAEYACSHL--LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           +H + + AE    HL   ++  ++ G+ +L SN+YA TGKW N +E+R+ M   GL K P
Sbjct: 379 VHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPP 438

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G S IEV+G +H+F+ G+ +HP  +EI+ +L E+V +++  GY P  S +L  +++E+  
Sbjct: 439 GTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKA 498

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
            Q L+ HSE+LA+AYGLI +     IRIVKNLR C DCH   KLISK+Y R+I++RDR R
Sbjct: 499 VQLLH-HSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIR 557

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF+ G CSC DYW
Sbjct: 558 FHHFKNGECSCKDYW 572


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/677 (37%), Positives = 371/677 (54%), Gaps = 66/677 (9%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + SL+  C  +  L   KQ+H+ +L+ G+  D      L           +E A ++FD 
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYV--KSGDIEEALQIFDS 304

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             + N+  WN ++ AY    +  +SF IF +++  +   PN+FT+P +++      +  +
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRML-AAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH + IK+ F+ D+++S  LI  Y+  G L  A  +  MI +KDVVSW SMI+G+VQ
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----------------- 260
             F ++A+E ++EM+   + PD + + + +SACA  + +  G                  
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSI 483

Query: 261 W------------PNEALSIFHELQLSKNVNPDE-------------------------- 282
           W              EA S F  ++  + +  +                           
Sbjct: 484 WNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGA 543

Query: 283 ----FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
               FTFVS +SA A L  +  G QIHA++ K G      ++ +LI +Y KCG+++ A  
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKM 603

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            F  +  R+   W+T+I   + +G G EALDLF +M++  +KP+ VTF  VL ACSH GL
Sbjct: 604 DFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGL 663

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EG  +F  M   +G+ P   HY C+VD+LGRAG LD A  F+E+MPI   + VW  LL
Sbjct: 664 VEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLL 723

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            ACK+H+N+E+ E+A  HLLELEP +  + VLLSN YA TGKW +  ++RK M+  G++K
Sbjct: 724 SACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRK 783

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           EPG S IEV   +H F  G+  HPL  +IY+ L  +  RL   GY     HL    E+E 
Sbjct: 784 EPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEG 843

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
               A  +HSE+LA+A+GL+S+    P+R++KNLRVC DCHT  K  S +  REI+LRD 
Sbjct: 844 KDPTAF-VHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDV 902

Query: 639 YRFHHFRGGNCSCMDYW 655
           YRFHHF  G+CSC DYW
Sbjct: 903 YRFHHFNNGSCSCGDYW 919



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/536 (23%), Positives = 234/536 (43%), Gaps = 84/536 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +F+++   +  +W  ++  Y+ +    ++  ++ ++ + S   P  +    ++ A  
Sbjct: 96  ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREM-HRSGVVPTPYVLSSILSACT 154

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           +   F++G+ IH  V K  F  + F+ N+LI  Y  C    +A  VF  +   D V++N+
Sbjct: 155 KTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNT 214

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +ISG  Q G  ++A                                         L IF 
Sbjct: 215 LISGHAQCGHGDRA-----------------------------------------LGIFD 233

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+QLS  ++PD  T  S+L+AC+ +G +  G Q+H+ + K G+ L+  +  SL+D+Y K 
Sbjct: 234 EMQLS-GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKS 292

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G++++AL++F +    +V +W+ M+  +       ++ D+F RM  A V+PN  T+  +L
Sbjct: 293 GDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCML 352

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPI 447
             C+H+G +  G    + +    G    +     ++DM  + G LD+A   ++ IE+  +
Sbjct: 353 RTCTHTGEIGLGEQ-IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDV 411

Query: 448 VPGASVWGAL---------------LGACKIH-ENVELAEYACSHLLELEPENHG----A 487
           V   S+                   + AC I  +N+ LA  A S    ++  + G    A
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLAS-AISACAGIKAVHQGSQIHA 470

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS--------SIEVNGEIHKFLAGES 539
            V +S   A    W+ +  L       G+ KE   S         I  NG I  F A   
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYAR---CGISKEAFSSFEAIEHKEGITWNGLISGF-AQSG 526

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
            +    +++ K+D+  A+   F +V + S    L +     +Q   +H+  +   Y
Sbjct: 527 LYEEALKVFMKMDQAGAKYNVFTFVSSISASANLAD----IKQGKQIHARVIKTGY 578



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 182/427 (42%), Gaps = 56/427 (13%)

Query: 38  PHPVFSLIKQCKNIK--QLKQ-IHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYA 91
           P+ + S++  C   +  QL + IH Q+ + G F + +  +    L+  C      S   A
Sbjct: 143 PYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRC-----RSFRLA 197

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
             +F  +   +  T+NTLI  ++      ++  IF ++   S   P+  T   ++ A + 
Sbjct: 198 DRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL-SGLSPDSVTIASLLAACSA 256

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +   R G+ +H  ++K+    D  +  SL+  Y   GD+  A  +F    + +VV WN M
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           +  + Q     K+ +++  M    V+P++ T   +L  C                     
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTC--------------------- 355

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
                                   G + +G QIH+   K G + + Y++  LIDMY+K G
Sbjct: 356 ---------------------THTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYG 394

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            LDKA  +   ++ +DV  W++MIAG+  +   +EAL+ F  MQ   + P+ +   + + 
Sbjct: 395 WLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAIS 454

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           AC+    V +G     ++  V G    V  +  +V +  R G+  EA    E +    G 
Sbjct: 455 ACAGIKAVHQGSQIHARVY-VSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGI 513

Query: 452 SVWGALL 458
           + W  L+
Sbjct: 514 T-WNGLI 519



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N +I  + + GF  +A  ++ E+ +     D V+ VAVLS  A+    E      EA+ +
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVR----DNVSWVAVLSGYAQNGLGE------EAVRL 130

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           + E+  S  V P  +   S+LSAC +     +G  IH ++ KQG     ++  +LI +Y 
Sbjct: 131 YREMHRS-GVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYL 189

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           +C +   A  VF  +   D   ++T+I+G A  G G  AL +F  MQ + + P++VT  +
Sbjct: 190 RCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIAS 249

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +L ACS  G + +G+   + +    G+         ++D+  ++G ++EA++  +
Sbjct: 250 LLAACSAVGDLRKGKQLHSYLLKA-GMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 285 FVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           F   L AC   G    +  +IHAK    G+     +   LID+Y K G + +A  VF  +
Sbjct: 44  FACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEEL 103

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RD   W  +++G+A  G G EA+ L+  M  + V P     +++L AC+ + L   GR
Sbjct: 104 SVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGR 163

Query: 404 MFFNQM 409
           +   Q+
Sbjct: 164 LIHVQV 169


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/616 (40%), Positives = 368/616 (59%), Gaps = 32/616 (5%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           +L++IH  +L +G    P   +      +L + S L YAR +  Q P   L   N L+RA
Sbjct: 32  RLREIHAHLLVSGRLASPSHHADFVA--SLASSSHLSYARLLLPQRPA-TLLAHNGLLRA 88

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR-------------VGQ 159
            +    P  +F  F +L    P  P+ ++F F+++AA  L                 +  
Sbjct: 89  LARGPCPGLAFAAFREL----PLAPDHYSFTFLVRAATSLAAAASATPVPTDVAVNLLAG 144

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           ++H    +     D  + +  +  YA  GD+      F  I   DVV   +M+     GG
Sbjct: 145 SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGG 204

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             + A EL+  M     + D V   A+L+   +      GR   EAL +F E+Q    V 
Sbjct: 205 DVDTARELFDGMP----QRDHVAWNAMLTGYVR-----VGR-SREALGLFDEMQ-KAGVA 253

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
             E T VSVL+ACAQ+GA++ G+ +H+ +  +G++++  L T+L+DMY+KCG +  ++EV
Sbjct: 254 VSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEV 313

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F T++ R+++ W++ ++G AM G G E L+LF RM+ A ++PN VTF  VL  CS +GLV
Sbjct: 314 FETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLV 373

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EGR  F+ M+  + V P ++HY CMVD+ GRAG LD+AV+FI  MP+ P   VWGALL 
Sbjct: 374 EEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLN 433

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           A +IH NV+L ++A   L E+E +N  A VLLSNIYA++  W  VS++R  M+  G+KK 
Sbjct: 434 ASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKM 493

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PGCS+IEV+G++H+F  G  SHP  K+I + L E+  RL+  GY  N   +L  +EEE+ 
Sbjct: 494 PGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEE- 552

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E A++LHSE+LA+A+GLI++     IRIVKNLRVC DCH   KLISK+++REI++RDR 
Sbjct: 553 KEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRN 612

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC DYW
Sbjct: 613 RFHHFKHGACSCRDYW 628


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 359/620 (57%), Gaps = 52/620 (8%)

Query: 41   VFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMFD 96
            + S++  C ++  LK    IH   ++  +  D  + + L +  A  G F++   A   F+
Sbjct: 433  LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA---ALTTFN 489

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            ++   ++ TWN+LI  Y+   +P  +  +F +L   S   P+  T   V+ A A L    
Sbjct: 490  RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL-SAINPDAGTMVGVVPACALLNDLD 548

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGF 215
             G  IHG+++K  FE D  + N+LI  YA CG L  A  +F      KD V+WN +I+ +
Sbjct: 549  QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 216  VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +Q G                                            EA+S FH+++L 
Sbjct: 609  MQNGH-----------------------------------------AKEAISSFHQMRL- 626

Query: 276  KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            +N +P+  TFVSVL A A L A   G+  HA + + G   N  +  SLIDMY KCG LD 
Sbjct: 627  ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDY 686

Query: 336  ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            + ++F+ +  +D   W+ M++G+A++G G  A+ LFS MQE++V+ ++V+F +VL AC H
Sbjct: 687  SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746

Query: 396  SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            +GLV+EGR  F+ M   Y + P ++HY CMVD+LGRAGL DE + FI+ MP+ P A VWG
Sbjct: 747  AGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWG 806

Query: 456  ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            ALLG+C++H NV+L E A  HL++LEP N    V+LS+IYA++G+W +  + R  M   G
Sbjct: 807  ALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866

Query: 516  LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
            LKK PGCS +E+  ++H F  G+ SHP  + ++   + ++ +++  GYVP+RS +LQ VE
Sbjct: 867  LKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVE 926

Query: 576  EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
            EED +E  L  HSERLAI + L++  P   I+IVKNLRVC DCHT  K ISK+  R I++
Sbjct: 927  EED-KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIV 985

Query: 636  RDRYRFHHFRGGNCSCMDYW 655
            RD  RFHHF  G CSC DYW
Sbjct: 986  RDATRFHHFEDGICSCNDYW 1005



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 228/499 (45%), Gaps = 73/499 (14%)

Query: 7   QHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL 66
           Q   + ++   +    P+ ++ T  N + H+P     L+  CK++  L QIH Q++ +G 
Sbjct: 6   QLRRSFTSIATAASEFPSLSSSTYTN-YLHYPR----LLSSCKHLNPLLQIHAQIIVSG- 59

Query: 67  FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF 126
           F   +S + L    +L  F   + AR +FD  P P+   WN++IRAY+ S +  ++  ++
Sbjct: 60  FKHHHSITHLINLYSL--FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMY 117

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
             +V      P+++TF FV+KA    +  + G   HG + +   E D+FI   L+  Y+ 
Sbjct: 118 YCMV-EKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSK 176

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
            GDL  A  VF  + K+DVV+WN+MI+G  Q     +A++ +R M++  V+P  V+++ +
Sbjct: 177 MGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNL 236

Query: 247 LSACAKKRDLEFGRW--------------PNEALSIFHELQ--------LSKNVNPDEFT 284
                K  ++E  R                N  + ++ +            + V+ D+ +
Sbjct: 237 FPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-------------------------CYL 319
           + ++++  A  G     +++  KMK   +++N                         C L
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 320 ----------TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
                      T L+ MY KCG  +KA ++F  ++ RD+  WS +IA     G   EAL 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMV 426
           LF  MQ  K+KPN VT  ++L AC+   L+  G+    F  + +    +  G    T +V
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG----TALV 472

Query: 427 DMLGRAGLLDEAVEFIEKM 445
            M  + G    A+    +M
Sbjct: 473 SMYAKCGFFTAALTTFNRM 491



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 219/486 (45%), Gaps = 71/486 (14%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS--KLFTPCALGTFSSLEYAREMFDQI 98
           +F  I +  NI+  + IH  + R   F    S     L++ C       ++ AR +FDQ+
Sbjct: 236 LFPGICKLSNIELCRSIHGYVFRRD-FSSAVSNGLIDLYSKCG-----DVDVARRVFDQM 289

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +  +W T++  Y+ +   ++   +F ++   +    N+ +      AAA  +    G
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI-NKVSAVSAFLAAAETIDLEKG 348

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IHG  ++   + D+ ++  L+  YA CG+   A  +F  +  +D+V+W+++I+  VQ 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------------------ 260
           G+ E+A+ L++EM+ + +KP+ VT++++L ACA    L+ G+                  
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 261 -----------WPNEALSIFHEL----------------QLSKNVNPDEFTFVSVLSA-- 291
                      +   AL+ F+ +                Q+    N  +  +   LSA  
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 292 ------------CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                       CA L  +D G  IH  + K G + +C++  +LIDMY KCG+L  A  +
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 340 FHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           F+    ++D   W+ +IA +   G  +EA+  F +M+     PN+VTF +VL A ++   
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             EG M F+      G +        ++DM  + G LD + +   +M      S W A+L
Sbjct: 649 FREG-MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS-WNAML 706

Query: 459 GACKIH 464
               +H
Sbjct: 707 SGYAVH 712



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 61/355 (17%)

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           L R+++S A     F        +S  + N   +P ++ +   L        IH  +I S
Sbjct: 7   LRRSFTSIATAASEFPSL-----SSSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVS 58

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F+    I++ LI+ Y++     +A  VF        + WNSMI  + +   + +A+E+Y
Sbjct: 59  GFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMY 117

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
             M                                          + K + PD++TF  V
Sbjct: 118 YCM------------------------------------------VEKGLEPDKYTFTFV 135

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L AC     +  GV  H ++ ++G++ + ++   L+DMY+K G+L +A EVF  +  RDV
Sbjct: 136 LKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDV 195

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV---LCACSHSGLVDEGRMF 405
             W+ MIAG +      EA+D F  MQ   V+P++V+  N+   +C  S+  L      +
Sbjct: 196 VAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGY 255

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             + +    V  G      ++D+  + G +D A    ++M      S WG ++  
Sbjct: 256 VFRRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAG 303


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 361/630 (57%), Gaps = 51/630 (8%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTF 85
           +G++     +  +I  C N++ L   +Q+H+Q +R GL  D         ++  C++   
Sbjct: 265 SGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVD-- 322

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            S+  AR++FDQI   N+++W  +I  Y       +  +   + +  +   PN FTF   
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +KA A L   R+G+ +    +K  F     ++NSLI  YA  G +  A   F ++ +K++
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNL 442

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+N++I  +                                   AK  + E      EA
Sbjct: 443 ISYNTVIDAY-----------------------------------AKNLNSE------EA 461

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L +F+E++  + +    FTF S+LS  A +G +  G QIHA++ K G+KLN  +  +LI 
Sbjct: 462 LELFNEIE-DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALIS 520

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CGN++ A +VF  ++ R+V  W+++I GFA +G   +AL+LF +M E  V+PN VT
Sbjct: 521 MYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVT 580

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  VL ACSH GLV+EG   F  M   +GV+P ++HY C+VD+LGR+G L EA++FI  M
Sbjct: 581 YIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSM 640

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P    A VW   LGAC++H N+EL ++A   ++E EP +  A +LLSN+YA   KWD VS
Sbjct: 641 PYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVS 700

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK M+   L KE GCS +EV  ++HKF  G++SHP   EIY +L  +  ++K  GYVP
Sbjct: 701 NIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVP 760

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           N   +L  VEEE  +E+ L  HSE++A+A+GLIS    +PIR+ KNLR+CGDCH+  K I
Sbjct: 761 NLDFVLHDVEEEQ-KEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYI 819

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S    REI++RD  RFHH + G CSC +YW
Sbjct: 820 SMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 203/461 (44%), Gaps = 92/461 (19%)

Query: 17  ISLPRHPNPTTLT------VNNGHQHHP------------HP---VFSL-IKQCKNIKQL 54
           +  P   NP  LT      +NNG  H              HP    +SL +K+C   +  
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 55  K---QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQP-NLYTWN 107
                +H ++ ++ L  D  + + L   ++ C        E A  +F  +    +L +W+
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG-----QWEKATSIFRLMGSSRDLISWS 137

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            ++  ++++    ++ + F+ ++ N  Y+PNE+ F    +A +      VG +I G VIK
Sbjct: 138 AMVSCFANNNMGFRALLTFVDMIENG-YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIK 196

Query: 168 SSF-EDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           + + + D+ +   LI  +    GDL  A+ VF  + +++ V+W  MI+  +Q G+  +AI
Sbjct: 197 TGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAI 256

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           +L+ +M     +PD  T+  V+SACA                   EL L           
Sbjct: 257 DLFLDMIFSGYEPDRFTLSGVISACANM-----------------ELLL----------- 288

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC---GNLDKALEVFHT 342
                         +G Q+H++  + G+ L+  +   LI+MY KC   G++  A ++F  
Sbjct: 289 --------------LGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 343 VKSRDVFVWSTMIAGFAMYGC-GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           +   +VF W+ MI G+   G    EALDLF  M    V PN  TF++ L AC++   +  
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 402 GRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEA 438
           G   F      + V  G     C    ++ M  R+G +D+A
Sbjct: 395 GEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/639 (37%), Positives = 367/639 (57%), Gaps = 47/639 (7%)

Query: 17  ISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL 76
           +SLP +P P +  +N           SL+K+CK++++ KQ+H  +L+ GLF+D +  S L
Sbjct: 13  LSLPNNP-PQSSELNAKFNVQG---LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNL 68

Query: 77  FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
              CAL  + S+EYA  +F QI +P  + +NT+IR   +S    ++ +++++++      
Sbjct: 69  VATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIE- 127

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT+PFV+KA + L   + G  IH  V K+  E D+F+ N LI+ Y  CG +  A  V
Sbjct: 128 PDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVV 187

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + +K V SW+S+I           ++E++ E  M         ++  +S   + R  
Sbjct: 188 FEQMDEKSVASWSSIIGAHA-------SVEMWHECLM---------LLGDMSGEGRHR-- 229

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                                   +E   VS LSAC  LG+ + G  IH  + +   +LN
Sbjct: 230 -----------------------AEESILVSALSACTHLGSPNFGRCIHGILLRNISELN 266

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + TSLIDMY K G+L+K L VF  +  ++ + ++ +I G A++G GREAL +FS M E
Sbjct: 267 VAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLE 326

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             + P+ V +  VL ACSH+GLV+EG   FN+++  + + P ++HY CMVD++GRAG+L 
Sbjct: 327 EGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLK 386

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
            A + I+ MPI P   VW +LL ACK+H N+E+ E A  ++ +L   N G  ++L+N+YA
Sbjct: 387 GAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYA 446

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           +  KW +V+ +R  M    L + PG S +E N  ++KF++ + S P C+ IY  + ++  
Sbjct: 447 RAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEW 506

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           +LK  GY P+ S +L L  +ED + Q L  HS++LAIA+ LI       IRI +N+R+C 
Sbjct: 507 QLKFEGYTPDMSQVL-LDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCN 565

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHT  K IS +Y REI +RDR RFHHF+ G CSC DYW
Sbjct: 566 DCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 364/618 (58%), Gaps = 49/618 (7%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF-TPCALGTFSSLEYAREMFDQ 97
           H + +   Q KN+   + IH  + R+ L  D +  + L    C  G  S    AR +FD+
Sbjct: 64  HSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSD---ARHVFDK 120

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P  ++ +W  LI  Y+ +  P ++  +   ++  + + PN FTF  ++KA        +
Sbjct: 121 MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRPNGFTFTSLLKATGACGGCSI 179

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H + +K ++++D+++ ++L+  YA C  + MA  VF  +  K+ VSWN++I+GF  
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF-- 237

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                                            A+K D E        L  F E+Q    
Sbjct: 238 ---------------------------------ARKADGE------TTLMKFAEMQ-RNG 257

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                FT+ S+ SA A++GA++ G  +HA + K G KL  ++  +++ MY K G++  A 
Sbjct: 258 FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDAR 317

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +  RD+  W+TM+   A YG G+EA+  F  +++  ++ N +TF +VL ACSH G
Sbjct: 318 KVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGG 377

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV EG+ +F+ M+  Y V P + HY   VD+LGRAGLL EA+ F+ KMP+ P A+VWGAL
Sbjct: 378 LVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGAL 436

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC++H+N ++ +YA  H+ EL+P++ G  VLL NIYA TGKW++ + +RK M+ +G+K
Sbjct: 437 LGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVK 496

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEP CS +++   +H F+A + +HP   +IY   +EI  R+K  GYVPN +H+L  + E+
Sbjct: 497 KEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQ 556

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E  L  HSE++A+A+ LI++     IRI+KN+R+CGDCH+  K +SK++ REI++RD
Sbjct: 557 E-RETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRD 615

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF  G+CSC DYW
Sbjct: 616 TNRFHHFSEGSCSCGDYW 633



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 42/277 (15%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           L L++     P    +  +I A A+       +AIH  + +S    D F+ NSLIH Y  
Sbjct: 48  LDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCK 107

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG ++ A  VF  +  +DVVSW  +I+G+ Q     +AI L  +M     +P+  T    
Sbjct: 108 CGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT---- 163

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                                                 F S+L A    G   IG Q+HA
Sbjct: 164 --------------------------------------FTSLLKATGACGGCSIGEQMHA 185

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              K     + Y+ ++L+DMY +C  +D A+ VF  + S++   W+ +IAGFA    G  
Sbjct: 186 LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGET 245

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            L  F+ MQ         T++++  A +  G +++GR
Sbjct: 246 TLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 282



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L + H  +L+    P    + S+++ACAQ   +     IHA + +  +  + +L  SLI 
Sbjct: 48  LDLLHAGELA----PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIH 103

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG +  A  VF  + SRDV  W+ +IAG+A      EA+ L   M  A+ +PN  T
Sbjct: 104 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           FT++L A    G    G    + +   Y     V   + ++DM  R   +D A+   +++
Sbjct: 164 FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 222

Query: 446 PIVPGASVWGALLG--ACKIHENVELAEYACSHLLELEPENHGALVL----LSNIYAKTG 499
            +      W AL+   A K      L ++A     E++    GA       + + +A+ G
Sbjct: 223 -VSKNEVSWNALIAGFARKADGETTLMKFA-----EMQRNGFGATHFTYSSMFSAFARIG 276

Query: 500 KWDNVSELRKHMRVSGLK 517
             +    +  H+  SG K
Sbjct: 277 ALEQGRWVHAHLIKSGQK 294


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 359/605 (59%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  + ++H  ++++    DP S   L   C      SL YAR +F +IP P+   +NT+I
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           R++S    P  S   F  +  N     N FTFPFV+KA +RL   ++   +H +++K   
Sbjct: 61  RSHSRFF-PSHSLSYFFSMRSNGIPLDN-FTFPFVLKACSRL---QINLHLHSLIVKYGL 115

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
             D+F+ N+LI  Y  CG L MA  VF  + ++D VSW+++I+ F+  G+          
Sbjct: 116 GSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY---------- 165

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                           +EAL +F ++QL   V PDE T +SV+S
Sbjct: 166 -------------------------------ASEALDLFEKMQLEDKVVPDEVTMLSVIS 194

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + LG +++G  + A + + G  ++  L T+LIDM+++CG++D+++ VF  +  R+V  
Sbjct: 195 AISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLT 254

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G  ++G   EAL +F  M+++ V+P+ VTF+ VL ACSH GLV EG   F  + 
Sbjct: 255 WTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIR 314

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            VYG+ P + HY CMVD+LGRAGLL+EA +F+E+MP+ P + +W  LLGAC  H N+ LA
Sbjct: 315 KVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLA 374

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E   + + ++    +G LVLLSN+Y   G+W   + +R  MR   + KEPGCSSI V+  
Sbjct: 375 EKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQT 434

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH+F++G++SHP  ++I   L  I+  L++ GY+    ++L  +EEE+ +E +L+ HSE+
Sbjct: 435 IHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEE-REHSLSYHSEK 493

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ ++S++  + IRI+KNLR+C DCH+  K IS  + R+I++RDR RFHHF  G CS
Sbjct: 494 LAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCS 553

Query: 651 CMDYW 655
           C DYW
Sbjct: 554 CHDYW 558



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 31/294 (10%)

Query: 10  ETLSTPVISLPRHPNPTTLTVNNGHQHHPH--PVFSL---------------------IK 46
           E+LS       R P+P T+  N   + H    P  SL                     +K
Sbjct: 36  ESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLK 95

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
            C  ++    +H+ +++ GL  D +  + L   C  G   SLE A ++FD++ + +  +W
Sbjct: 96  ACSRLQINLHLHSLIVKYGLGSDIFVQNALI--CVYGYCGSLEMAVKVFDEMSERDSVSW 153

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           +T+I ++ ++    ++  +F ++       P+E T   VI A + L    +G+ +   + 
Sbjct: 154 STVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIG 213

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +  F   + +  +LI  ++ CG +  +  VF  +  ++V++W ++I+G    G   +A+ 
Sbjct: 214 RLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALA 273

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           ++  M    V+PD VT   VL AC+       G    E   IF  ++    ++P
Sbjct: 274 MFHSMRKSGVQPDYVTFSGVLVACSH------GGLVKEGWDIFESIRKVYGMDP 321


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 351/619 (56%), Gaps = 60/619 (9%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAREMFD 96
           PH + SLI +C  +K+LKQI    ++T    +    +K    C    T +S+E+A ++FD
Sbjct: 27  PH-LISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFD 85

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           QI QPN+  +NT+ R Y+   +P++    F +                 ++  +++    
Sbjct: 86  QITQPNIVLFNTMARGYARLNDPLRMITHFRR----------------CLRLVSKVKALA 129

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +H   +K    D++++  +LI+ Y  CGD+  +  VF  I +  VV++N++I    
Sbjct: 130 EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLA 189

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           +                                             NEAL++F ELQ   
Sbjct: 190 RNN-----------------------------------------RANEALALFRELQ-EI 207

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P + T + VLS+CA LG++D+G  +H  +KK G      + T+LIDMY KCG+LD A
Sbjct: 208 GLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDA 267

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           + VF  +  RD   WS +I  +A +G G +A+ + + M++ KV+P+ +TF  +L ACSH+
Sbjct: 268 VNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHN 327

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG  +F+ M   YG+VP +KHY CMVD+LGRAG LDEA +FI+++PI P   +W  
Sbjct: 328 GLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRT 387

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC  H NVE+ +     + EL+  + G  V+ SN+ A+ GKWD+V+ LRK M   G 
Sbjct: 388 LLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGA 447

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
            K PGCSSIEVN  +H+F AGE  H     ++  LDE+V  LKS GYVP+ S +     E
Sbjct: 448 VKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADME 507

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ++ +E  L  HSE+LAI +GL++  P   IR+VKNLRVCGDCH  AK IS ++ R+I+LR
Sbjct: 508 DEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILR 567

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G CSC DYW
Sbjct: 568 DVQRFHHFKDGKCSCGDYW 586


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 360/605 (59%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  + ++H  ++++    DP S   L   C      SL YAR +F +IP P+   +NT+I
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           R++S    P  S   F  +  N     N FTFPFV+KA +RL   ++   +H +++K   
Sbjct: 61  RSHSRFF-PSHSLFYFFSMRSNGIPLDN-FTFPFVLKACSRL---QINLHLHSLIVKYGL 115

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + D+F+ N+LI  Y  CG L MA  VF  + ++D VSW+++I+ F+  G+          
Sbjct: 116 DSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGY---------- 165

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                           +EAL +F ++QL   V PDE T +SV+S
Sbjct: 166 -------------------------------ASEALDLFEKMQLEDKVVPDEVTMLSVIS 194

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + LG +++G  + A + + G+ ++  L T+LIDM+++CG++D+++ VF  +  R+V  
Sbjct: 195 AISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLT 254

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G  ++G   EAL +F  M+++ V+P+ VTF+ VL ACSH GLV EG   F  + 
Sbjct: 255 WTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIR 314

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            VY + P + HY CMVD+LGRAGLL+EA +F+E+MP+ P + +W  LLGAC  H N+ LA
Sbjct: 315 KVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLA 374

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E   + + ++    +G LVLLSN+Y   G+W   + +R  MR   + KEPGCSSI V+  
Sbjct: 375 EKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQT 434

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH+F++G++SHP  ++I   L  I+  L++ GY+    ++L  +EEE+ +E +L+ HSE+
Sbjct: 435 IHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEE-REHSLSYHSEK 493

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ ++S++  + IRI+KNLR+C DCH+  K IS  + R+I++RDR RFHHF  G CS
Sbjct: 494 LAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCS 553

Query: 651 CMDYW 655
           C DYW
Sbjct: 554 CHDYW 558



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 31/294 (10%)

Query: 10  ETLSTPVISLPRHPNPTTLTVNNGHQHHP-----HPVFS------------------LIK 46
           E+LS       R P+P T+  N   + H      H +F                   ++K
Sbjct: 36  ESLSYARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLK 95

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
            C  ++    +H+ +++ GL  D +  + L   C  G   SLE A ++FD++ + +  +W
Sbjct: 96  ACSRLQINLHLHSLIVKYGLDSDIFVQNALI--CVYGYCGSLEMAVKVFDEMSERDSVSW 153

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           +T+I ++ ++    ++  +F ++       P+E T   VI A + L    +G+ +   + 
Sbjct: 154 STVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIG 213

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +      + +  +LI  ++ CG +  +  VF  +  ++V++W ++I+G    G   +A+ 
Sbjct: 214 RLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALA 273

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           ++  M    V+PD VT   VL AC+       G    E   IF  ++    ++P
Sbjct: 274 MFHSMRKSGVQPDYVTFSGVLVACSH------GGLVKEGWDIFESIRKVYRMDP 321


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/634 (37%), Positives = 366/634 (57%), Gaps = 52/634 (8%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCA 81
           PTT   N  H    H +  L  + K + Q K  H Q+L  GL  D  +++    +++ C 
Sbjct: 54  PTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCG 113

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                S+++AR++FD++P  +L +WNT+I + + + E  ++  + LQ+      F +EFT
Sbjct: 114 -----SVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF-SEFT 167

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A A        Q +H   IK++ + ++F++ +L+  YA CG +  A CVF  + 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            + VV+W+SM +G+VQ   +E+A+ L+R+                              W
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKA-----------------------------W 258

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                           +  D+F   SV+ ACA L AM  G Q++A + K G   N ++ +
Sbjct: 259 ET-------------GLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVAS 305

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SLIDMY KCG ++++ +VF  V+ R+V +W+ MI+G + +    E + LF +MQ+  + P
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSP 365

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N VTF +VL AC H GLV +G+ +F+ M   + + P V HY+CMVD L RAG + EA + 
Sbjct: 366 NDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDL 425

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I K+P    AS+WG+LL +C+ H N+ELAE A   L ++EP N G  +LLSN+YA  GKW
Sbjct: 426 ISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKW 485

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           D V+++RK ++ S +KKE G S IE+  ++H F+ GE +HP   EIYSKL+E++  L+  
Sbjct: 486 DEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY     H L  V  E ++++ L  HSE+LA   GL+ + P+ PIRI+KNLR+CGDCH+ 
Sbjct: 546 GYKVETQHDLHQV-GESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KL SK + R++++RD  RFHHF+ G CSC D+W
Sbjct: 605 MKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 363/584 (62%), Gaps = 37/584 (6%)

Query: 76  LFTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
           L+T    G   S  ++ AR++FD++ + +L +W T++  Y       +S  +F Q+ + +
Sbjct: 304 LWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFEN 363

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P+E     V+ A   L  F +G+++H  ++      D F+ N+L+  YA CG L  A
Sbjct: 364 -VIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEA 422

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
              F  +  K   SWNSM+ GF + G  +KA + + ++     + D V+   +++A  K 
Sbjct: 423 LRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIP----EKDIVSWNTMVNAYVK- 477

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
            DL      NE+  IF ++Q S NV PD+ T +S+LS+CA++GA++ G+ ++  ++K  I
Sbjct: 478 HDL-----FNESFEIFCKMQ-SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEI 531

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
            ++  L T+LIDMY KCG ++ A E+F  +  ++VFVW+ M+A +AM G   EA+DL+  
Sbjct: 532 GIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLE 591

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M+E  VKP+ VTF  +L ACSH GLVDEG  +FN++   Y ++P + HY CMVD+LGR G
Sbjct: 592 MEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVG 651

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            L+E V+FIE+MPI P  S+W +L+ AC+ H NVELAE A   L+E++P N+GA VLLSN
Sbjct: 652 HLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSN 711

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           IYA  G+WD+VS++R  +  +G+ K+PG + IE NG +H+F+A   S+ +  +I   L +
Sbjct: 712 IYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVA---SNLVSADILCMLQD 768

Query: 554 IVARLKSFGYVPNRSHLLQLVEEE--DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           I  RL              LV++E  D   Q    HSERLA+A+GLI+ + + PIR+V +
Sbjct: 769 IERRL--------------LVKQELSDTTSQ----HSERLAVAFGLINNQENSPIRVVNS 810

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +R+C DCH+V KLIS+ Y+REI++RD YRFH F  G+CSC DYW
Sbjct: 811 VRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 230/460 (50%), Gaps = 20/460 (4%)

Query: 9   METLSTPVISL----PRHPNPTTLTVNNGHQ-HHPHPVFSLIKQCKNIKQLKQIHTQMLR 63
           M TL+ P I      P    P TL     H    PH +  L+K C NI++   IH  ++ 
Sbjct: 1   MATLTLPNIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLIT 60

Query: 64  TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSF 123
             L  DP   S++     L + ++L+ A ++     +P    WNTL+        P +  
Sbjct: 61  ANLIHDPEITSQVLA--FLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVL 118

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
             +  +V       +  TF F+I A  +    ++G  +HG ++K  F  +  ++N+L+  
Sbjct: 119 ECYYHMVTQGVLL-DISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGL 177

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y+ CG L     +F  +  +DV+SWN+MIS +V  G + +A++L+ EM +  V PDE+TM
Sbjct: 178 YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITM 237

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
           V+++S CAK +DLE G+  +  + + ++L +  ++       V + S C   G MD    
Sbjct: 238 VSLVSTCAKLKDLEMGKRLHLYI-VDNKLWIRGSLLN---CLVDMYSKC---GKMDEAHG 290

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           + ++  +   +++  L T+L+  Y K   +DKA ++F  +  R +  W+TM++G+   G 
Sbjct: 291 LLSRCDES--EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGY 348

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
             E+L+LF +M+   V P+ V    VL AC H    D GR   +     YG++       
Sbjct: 349 YCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS-VHAFIVTYGMLVDGFLGN 407

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-GACK 462
            ++D+  + G LDEA+   E++P    AS W ++L G C+
Sbjct: 408 ALLDLYAKCGKLDEALRTFEQLPCKSAAS-WNSMLDGFCR 446


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/678 (37%), Positives = 375/678 (55%), Gaps = 72/678 (10%)

Query: 43  SLIKQCKN---IKQLKQIHTQMLRTGLFFDPY-----SASKLFTPCALGTFSSLEYAREM 94
           +L++ C N         I   +L+TG +FD +     +   +FT   L     ++ AR +
Sbjct: 150 ALLRSCSNPLFFTTGLAIFAFLLKTG-YFDSHVCVGCALIDMFTKGGL----DIQSARMV 204

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD++   NL TW  +I  YS       +  +F +L+  S Y P++FT   ++ A   L  
Sbjct: 205 FDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLV-SEYTPDKFTLTSLLSACVELEF 263

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           F +G+ +H  VI+S    D+F+  +L+  YA    +  +  +F  +   +V+SW ++ISG
Sbjct: 264 FSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISG 323

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------------- 261
           +VQ    ++AI+L+  M   +V P+  T  +VL ACA   D   G+              
Sbjct: 324 YVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTI 383

Query: 262 -------------------PNEALSIFHELQL----------SKNVNPDE---------- 282
                                +A +I  E  L          +K ++ DE          
Sbjct: 384 NCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTG 443

Query: 283 -----FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                FT+  +LS  A +G +  G QIHA + K G   N  +  +LI MY+KCGN + AL
Sbjct: 444 VGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAAL 503

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF+ +  R+V  W+++I+GFA +G   +AL+LF  M E  VKPN VT+  VL ACSH G
Sbjct: 504 QVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVG 563

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           L+DE    FN M   + + P ++HY CMVD+LGR+GLL EA+EFI  MP    A VW   
Sbjct: 564 LIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTF 623

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LG+C++H N +L E+A   +LE EP +    +LLSN+YA  G+WD+V+ LRK M+   L 
Sbjct: 624 LGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLI 683

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KE G S IEV+ ++HKF  G++SHP  ++IY +LDE+  ++K+ GY+PN   +L  VE+E
Sbjct: 684 KETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDE 743

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             +EQ L  HSE++A+AY LIS    +PIR+ KNLRVCGDCHT  K IS +  REI++RD
Sbjct: 744 Q-KEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRD 802

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHH + G CSC DYW
Sbjct: 803 ANRFHHIKDGKCSCNDYW 820



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 51/348 (14%)

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
           E ++  +  L L   SP   +      ++KA  R     +G+ +H  +I S    D  + 
Sbjct: 22  ESLRKAISRLDLTTTSPLIKSSL----LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLL 77

Query: 178 NSLIHFYAICGDLAMAYCVFVMIG--KKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           NSLI  Y+ CGD   A  +F  +G  K+D+VSW+++IS F       +A+  +  M    
Sbjct: 78  NSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHM---- 133

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVSVLSACAQ 294
                                               LQ S+N + P+E+ F ++L +C+ 
Sbjct: 134 ------------------------------------LQCSRNIIYPNEYCFTALLRSCSN 157

Query: 295 LGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVKSRDVFVWS 352
                 G+ I A + K G    +  +  +LIDM+TK G ++  A  VF  ++ +++  W+
Sbjct: 158 PLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWT 217

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            MI  ++  G   +A+DLF R+  ++  P+  T T++L AC        G+   + +   
Sbjct: 218 LMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRS 277

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            G+   V     +VDM  ++  ++ + +    M +      W AL+  
Sbjct: 278 -GLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISG 323



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 50/219 (22%)

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KS 345
           +L AC + G +++G  +H K+   G+ L+  L  SLI +Y+KCG+ + AL +F  +    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK---VKPNAVTFTNVLCACSH-----SG 397
           RD+  WS +I+ FA       AL  F  M +     + PN   FT +L +CS+     +G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 398 L--------------------------------VDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           L                                +   RM F++M+        +  +T M
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQH-----KNLVTWTLM 219

Query: 426 VDMLGRAGLLDEAVEFIEKMPI---VPGASVWGALLGAC 461
           +    + GLLD+AV+   ++ +    P      +LL AC
Sbjct: 220 ITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC 258


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/627 (39%), Positives = 376/627 (59%), Gaps = 45/627 (7%)

Query: 39  HPVFSLIKQ-CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           HP    ++Q C N   LKQIHTQ++ TGL F  Y  S L     + +  +L YA ++F+ 
Sbjct: 149 HPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLI---KISSKFNLPYAFKIFNY 205

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQ---SFMIFLQLVYNSPYFPNEFTFPFVIKAA-ARLV 153
           I  P ++ +NTLI +  +     Q   +F ++ +++ N    PN FTFP + KA  +   
Sbjct: 206 ISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQS 265

Query: 154 QFRVGQAIHGMVIK---SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            F  G  +H  V+K     F++  F+  SL++FYA  G + ++  +F  I + D+ +WN 
Sbjct: 266 WFHYGPLLHTHVLKFLQPPFDN--FVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNV 323

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +++ + +   +      + + +                            +  E+L +F 
Sbjct: 324 ILNAYARSSSYHSYSNSFDDAD----------------------------FSLESLYLFR 355

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++Q+   + P+E T V+++SAC+ LGA+  G  +H  + +  IK+N ++ T+ +DMY+KC
Sbjct: 356 DMQVI-GIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKC 414

Query: 331 GNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           G L+ A +VF  +    RD F ++ MI GFA++G G +AL+L+ +M+   + P++ TF  
Sbjct: 415 GCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVV 474

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
            + ACSH GLV+EG   F  M+ V+GV P ++HY C++D+LGRAG L EA E++  MP+ 
Sbjct: 475 TMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMK 534

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A +W +LLGA +IH N+ + E A + L+ELEPE  G  VLLSN+YA  G+ ++V  +R
Sbjct: 535 PNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVR 594

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K M+  G+ K PG S +E+ G +H+FL G+ SHP  KEIY K+ EI +RL+ +G+    S
Sbjct: 595 KLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTS 654

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
             L  +EEED +E  L+ HSERLAIA+ LI+   S  IRI+KNLRVCGDCH   KLIS  
Sbjct: 655 EALFDLEEED-KEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVA 713

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           Y+REI++RDR RFHHF+ G+CSC+DYW
Sbjct: 714 YHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 359/625 (57%), Gaps = 58/625 (9%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEY 90
           H+HH   +  L+ Q K     +Q+H+ +++  +  D + +  L   ++ C L     LE 
Sbjct: 337 HEHHEQAL-ELLGQMK-----RQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-----LED 385

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR  F+ +P+ +L  WN +I  YS   E +++  +F+++      F N+ T   ++K+ A
Sbjct: 386 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTA 444

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    V + +HG+ +KS F  D+++ NSLI  Y  C  +  A  +F      D+VS+ S
Sbjct: 445 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 504

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI+ + Q G  E                                         EAL +F 
Sbjct: 505 MITAYAQYGQGE-----------------------------------------EALKLFL 523

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q    + PD F   S+L+ACA L A + G Q+H  + K G  L+ +   SL++MY KC
Sbjct: 524 EMQ-DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKC 582

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G++D A   F  +  R +  WS MI G A +G GR+AL LF++M +  V PN +T  +VL
Sbjct: 583 GSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 642

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC+H+GLV E +++F  ME ++G  P  +HY CM+D+LGRAG ++EAVE + KMP    
Sbjct: 643 GACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEAN 702

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
           ASVWGALLGA +IH++VEL   A   L  LEPE  G  VLL+NIYA  GKW+NV+E+R+ 
Sbjct: 703 ASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRL 762

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           MR S +KKEPG S IEV  +++ FL G+ SH   +EIY+KLDE+   +   GYVP     
Sbjct: 763 MRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEID 822

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  VE+ + +E  L  HSE+LA+A+GLI+     PIR+ KNLRVC DCHT  K I K+ +
Sbjct: 823 LHDVEQSE-KELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVS 881

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHF+ G+CSC DYW
Sbjct: 882 REIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/555 (25%), Positives = 255/555 (45%), Gaps = 98/555 (17%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+ QC   K L+   QIH  + ++GL  DP   +    L++ C         YAR++ D+
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKC-----RXFGYARKLVDE 116

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             +P+L +W+ LI  Y+ +     + M F ++ +      NEFTF  V+KA + +   R+
Sbjct: 117 SSEPDLVSWSALISGYAQNGLGGGALMAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG+V+ S FE D+F++N+L+  YA C +   +  +F  I +++VVSWN++ S +VQ
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------------WP--- 262
             F  +A+ L+ EM +  +KP+E ++ ++++AC   RD   G+            W    
Sbjct: 236 XDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 263 --------------NEALSIFHELQLSKNVNPDEFTFVSVLSACA----------QLGAM 298
                          +A+S+F +++      PD  ++ +V++ C            LG M
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIK-----QPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
               Q+H+ + K  ++ + +++  L+DMY+KC  L+ A   F+ +  +D+  W+ +I+G+
Sbjct: 351 K--RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 408

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-----------CACSHSGLVDEG----R 403
           + Y    EAL LF  M +  +  N  T + +L           C   H   V  G     
Sbjct: 409 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 468

Query: 404 MFFNQMEPVYG---------------VVPGVKHYTCMVDMLGRAGLLDEAVEF---IEKM 445
              N +   YG                +  +  +T M+    + G  +EA++    ++ M
Sbjct: 469 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 528

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLE----LEPENHGALVLLSNIYAKTGKW 501
            + P   V  +LL AC      E  +    H+L+    L+     +LV   N+YAK G  
Sbjct: 529 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV---NMYAKCGSI 585

Query: 502 DNVSELRKHMRVSGL 516
           D+       +   G+
Sbjct: 586 DDAGRAFSELTERGI 600



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 220/458 (48%), Gaps = 42/458 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C  +K L   KQ+H  ++ +G   D + A+ L    A         ++ +FD+IP
Sbjct: 162 SVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA--KCDEFLDSKRLFDEIP 219

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + N+ +WN L   Y       ++  +F ++V  S   PNEF+   ++ A   L     G+
Sbjct: 220 ERNVVSWNALFSCYVQXDFCGEAVGLFYEMVL-SGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG +IK  ++ D F +N+L+  YA  GDLA A  VF  I + D+VSWN++I+G V   
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 220 FFEKAIELYRE-----------MEMENVKPDEVTMVAVLSACAKKRD--LEFGRWPN--- 263
             E+A+EL  +           M+ME+     V +V + S C    D  + F   P    
Sbjct: 339 HHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398

Query: 264 -----------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                            EALS+F E+   + +  ++ T  ++L + A L  + +  Q+H 
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMH-KEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 457

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              K G   + Y+  SLID Y KC +++ A  +F      D+  +++MI  +A YG G E
Sbjct: 458 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEE 517

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           AL LF  MQ+ ++KP+    +++L AC++    ++G+     +   YG V  +     +V
Sbjct: 518 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLV 576

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +M  + G +D+A     ++    G   W A++G    H
Sbjct: 577 NMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQH 613



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 174/407 (42%), Gaps = 63/407 (15%)

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           LI+     +E  Q+  I L L+    + P   ++  ++         R G  IH  + KS
Sbjct: 27  LIQTVPQFSEDPQTTAI-LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS 85

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
              DD  I N LI+ Y+ C     A  +     + D+VSW+++ISG+ Q G    A+  +
Sbjct: 86  GLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAF 145

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            EM +  VK +E T  +VL AC+  +DL  G+                            
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK---------------------------- 177

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
                         Q+H  +   G + + ++  +L+ MY KC     +  +F  +  R+V
Sbjct: 178 --------------QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+ + + +       EA+ LF  M  + +KPN  + ++++ AC  +GL D  R     
Sbjct: 224 VSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSR----- 276

Query: 409 MEPVYGVVPGVKH------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
            + ++G +  + +         +VDM  + G L +A+   EK+   P    W A++  C 
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCV 335

Query: 463 IHENVELAEYACSHLLELEPENHGALVLL---SNIYAKTGKWDNVSE 506
           +HE+    E A   L +++ + H +L+ +   S+++   G  D  S+
Sbjct: 336 LHEH---HEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSK 379


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 371/665 (55%), Gaps = 85/665 (12%)

Query: 16  VISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---- 71
           +ISL   PN  T             +F    + K  ++ KQIH Q+L+ GL  D +    
Sbjct: 69  MISLGLSPNSYTFPF----------LFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTS 118

Query: 72  ------------SASKLFTPCA-------------LGTFSSLEYAREMFDQIPQPNLYTW 106
                        A K+F   +               +  +++ A++MFD+IP  ++ +W
Sbjct: 119 LISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSW 178

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N +I  Y+      ++  +F +++      P+E T   V+          +G+ IH  + 
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMM-KMDVKPDESTMATVLSTCTHSGNVELGRQIHSWID 237

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
              F  +L + N+LI  Y+ CG++  A+ +F  +  KDV+SWN++I G+      ++A+ 
Sbjct: 238 NHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALL 297

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           +++EM                        L+ G  PN+                   T +
Sbjct: 298 VFQEM------------------------LKLGETPNDV------------------TML 315

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQ--GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           S+L ACA LGA+DIG  IH  + K+  GI  N  L TSLIDMY KCGN++ A +VF T+ 
Sbjct: 316 SILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTIL 375

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
           ++ +   + MI GFAM+G    A DL SRM++  ++P+ +TF  +L ACSH+GL D GR 
Sbjct: 376 NKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRK 435

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            F  M   Y + P ++HY CM+D+LGR+GL  EA E I  M + P   +WG+LL ACKIH
Sbjct: 436 IFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIH 495

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           +N+EL E     L+++EP+N G+ VLLSNIYA + +WD+V+ +R  +   GLKK PGCSS
Sbjct: 496 KNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSS 555

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IE++  +H+FL G+  HP  KEIY  L+EI + L   G+V + S +LQ +EEE ++E AL
Sbjct: 556 IEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEE-LKEGAL 614

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
           + HSE+LAIA+GLIS +P   +RIVKNLRVC +CH   KLISK+Y REI+ RDR RFHHF
Sbjct: 615 SYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHF 674

Query: 645 RGGNC 649
           + G C
Sbjct: 675 KDGMC 679



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 200/417 (47%), Gaps = 76/417 (18%)

Query: 62  LRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           ++ GL    Y+ SKL   C L   F  L YA  +F  I +PN  +WNT+IR ++ S++PI
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
            +  +++ ++ +    PN +TFPF+ K+ A+    + G+ IH  ++K     DL +  SL
Sbjct: 61  SALNLYVYMI-SLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSL 119

Query: 181 IHFYAICGDLAMAYCVF------------VMIGK-------------------KDVVSWN 209
           I  YA  G +  A+ VF             MI                     KDVVSWN
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWN 179

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +MISG+ + G +++A+EL+ EM   +VKPDE TM  VLS C    ++E GR         
Sbjct: 180 AMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGR--------- 230

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                                            QIH+ +   G   N  L  +LID+Y+K
Sbjct: 231 ---------------------------------QIHSWIDNHGFGSNLKLVNALIDLYSK 257

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG +++A  +F  ++ +DV  W+T+I G+A     +EAL +F  M +    PN VT  ++
Sbjct: 258 CGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSI 317

Query: 390 LCACSHSGLVDEGRMFFNQME-PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           L AC+H G +D GR     ++  + G++      T ++DM  + G ++ A +  + +
Sbjct: 318 LPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI 374


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 347/561 (61%), Gaps = 21/561 (3%)

Query: 104 YTWNTLIRAYS---SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           + WN +IRA     SS +      ++L++  N    P+  TFPF++ +    +   +GQ 
Sbjct: 25  FLWNIIIRAIVHNVSSPQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLGQR 83

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
            H  ++    + D F+  SL++ Y+ CGDL  A  VF   G KD+ +WNS+++ + + G 
Sbjct: 84  THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--- 277
            + A +L+ EM   NV         +  +C     +  G++  EAL +F E+QL K    
Sbjct: 144 IDDARKLFDEMPERNV---------ISWSCLINGYVMCGKY-KEALDLFREMQLPKPNEA 193

Query: 278 -VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V P+EFT  +VLSAC +LGA++ G  +HA + K  ++++  L T+LIDMY KCG+L++A
Sbjct: 194 FVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERA 253

Query: 337 LEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACS 394
             VF+ + S+ DV  +S MI   AMYG   E   LFS M  +  + PN+VTF  +L AC 
Sbjct: 254 KRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACV 313

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GL++EG+ +F  M   +G+ P ++HY CMVD+ GR+GL+ EA  FI  MP+ P   +W
Sbjct: 314 HRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIW 373

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LL   ++  +++  E A   L+EL+P N GA VLLSN+YAKTG+W  V  +R  M V 
Sbjct: 374 GSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVK 433

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+ K PGCS +EV G +H+F+ G+ S    + IY+ LDEI+ RL+  GYV +   +L  +
Sbjct: 434 GINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDL 493

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            E+D +E AL+ HSE+LAIA+ L+   P  P+RI+KNLR+CGDCH V K+ISKL++REI+
Sbjct: 494 NEKD-KEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIV 552

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHFR G+CSC D+W
Sbjct: 553 VRDCNRFHHFRDGSCSCRDFW 573



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 125/282 (44%), Gaps = 48/282 (17%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP----YFPNEFTFP 143
           ++ AR++FD++P+ N+ +W+ LI  Y    +  ++  +F ++    P      PNEFT  
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-K 202
            V+ A  RL     G+ +H  + K   E D+ +  +LI  YA CG L  A  VF  +G K
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEM-ENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           KDV ++++MI      G  ++  +L+ EM   +N+ P+ VT V +L AC  +  +     
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI----- 318

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            NE  S F  +     + P          +    G M                       
Sbjct: 319 -NEGKSYFKMMIEEFGITP----------SIQHYGCM----------------------- 344

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYG 362
             +D+Y + G + +A     ++    DV +W ++++G  M G
Sbjct: 345 --VDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 384


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/608 (38%), Positives = 351/608 (57%), Gaps = 49/608 (8%)

Query: 44  LIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           L+K+C  + +++Q   +H  ++ +  F D +   +            L+ AR MFD++P 
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSH-FLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPT 151

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ TW  LI  +S +  P  + ++F Q++    + PN FT   ++KA+        G  
Sbjct: 152 KDMVTWTALIAGFSQNNRPRDALLLFPQML-RLGFQPNHFTLSSLLKASGSEHGLDPGTQ 210

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   +K  ++  +++ ++L+  YA CG +  A   F  +  K  VSWN++ISG  + G 
Sbjct: 211 LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGE 270

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E                                          AL +  ++Q  KN  P
Sbjct: 271 GE-----------------------------------------HALHLLWKMQ-RKNFQP 288

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
             FT+ SVLSACA +GA++ G  +HA M K G+KL  ++  +L+DMY K G++D A  VF
Sbjct: 289 THFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +   DV  W+TM+ G A +G G+E LD F +M    ++PN ++F  VL ACSHSGL+D
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG  +F  M+  Y V P V HY   VD+LGR GLLD A  FI +MPI P A+VWGALLGA
Sbjct: 409 EGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGA 467

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C++H+N+EL  YA     EL+P + G  +LLSNIYA  G+W +V+++RK M+ SG+KK+P
Sbjct: 468 CRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQP 527

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
            CS +E+   +H F+A + +HP  KEI  K +EI  ++K  GYVP+ SH+L  V++++ +
Sbjct: 528 ACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQE-R 586

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E+ L  HSE+LA+A+ L++     PIRI KN+RVCGDCH   K +SK+ +REI++RD  R
Sbjct: 587 EEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNR 646

Query: 641 FHHFRGGN 648
           FH FR G+
Sbjct: 647 FHRFRDGS 654



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 26/251 (10%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           PD   +  +L  C +LG ++ G  +HA +     +  +  L   +++MY KCG LD A  
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  + ++D+  W+ +IAGF+     R+AL LF +M     +PN  T +++L A      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 399 VDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +D G     Q+      YG    V   + +VDM  R G +D A    + MP     S W 
Sbjct: 205 LDPG----TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WN 259

Query: 456 ALLGACKIHENVELAEYACSHLLELEPEN--------HGALVLLSNIYA-KTGKWDNVSE 506
           AL+     H      E+A   L +++ +N           L   ++I A + GKW     
Sbjct: 260 ALISG---HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW----- 311

Query: 507 LRKHMRVSGLK 517
           +  HM  SGLK
Sbjct: 312 VHAHMIKSGLK 322


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/641 (39%), Positives = 359/641 (56%), Gaps = 61/641 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q   +H   +R  L  +  S SKL     L
Sbjct: 226 PNASTLVA----------LLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLL 275

Query: 83  GTF--------SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
           GT          SL YAR +FD +P  N  TW+ LI  +   +   Q+F++F  ++    
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            F +  +    ++A A L   R+G+ +H ++ KS    DL   NSL+  YA  G +  A 
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            +F  +  KD VS+++++SG+VQ G  E+A  ++++M+                AC    
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ----------------AC---- 435

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                 NV PD  T VS++ AC+ L A+  G   H  +  +G+ 
Sbjct: 436 ----------------------NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 473

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               +  +LIDMY KCG +D + +VF+ + SRD+  W+TMIAG+ ++G G+EA  LF  M
Sbjct: 474 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 533

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                 P+ VTF  +L ACSHSGLV EG+ +F+ M   YG+ P ++HY CMVD+L R G 
Sbjct: 534 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGF 593

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA EFI+ MP+     VW ALLGAC++++N++L +     + EL PE  G  VLLSNI
Sbjct: 594 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 653

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           Y+  G++D  +E+R   +V G KK PGCS IE+NG +H F+ G+ SHP   EIY +LD I
Sbjct: 654 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 713

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +  +K  GY P+ S +LQ +EEE  +E+AL  HSE+LAIAYG++S+   + I + KNLRV
Sbjct: 714 LVGIKKLGYQPDTSFVLQDLEEE-EKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 772

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCHTV K IS L  R I++RD  RFHHF+ G CSC D+W
Sbjct: 773 CGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 78/457 (17%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL-QLVYNSPYFPNEFTFPFVI 146
           L  A  +FDQIP P++ T+N LIRAYSSS+    +  + L + +      PN +TFPF +
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           KA + L     G+AIH   I +  + DLF+S +L+  Y  C  L  A  +F  +  +D+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 207 SWNSMISGFVQGGFFEKAIE--LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +WN+M++G+   G +  A+   L  +M+M  ++P+  T+VA+L   A++  L  G     
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG----- 247

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSL 323
                                         + A  I   +H+ +  K  +     L T+L
Sbjct: 248 ----------------------------TSVHAYRIRACLHSNRNSKSKLTDGVLLGTAL 279

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPN 382
           +DMY KCG+L  A  VF  + +R+   WS +I GF +     +A  LF  M  +     +
Sbjct: 280 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339

Query: 383 AVTFTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
             +  + L AC+    +D  RM    + +    GV   +     ++ M  +AGL+D+A+ 
Sbjct: 340 PTSIASALRACAS---LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 441 FIEKMPIVPGASVWGALLG------------------ACKIHENVELAEY---ACSHLLE 479
             ++M +    S    + G                  AC +  +         ACSHL  
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 480 LEPE--NHGALVL------------LSNIYAKTGKWD 502
           L+    +HG++++            L ++YAK G+ D
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/641 (39%), Positives = 360/641 (56%), Gaps = 87/641 (13%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT 84
           P ++   N + +  H +  L+ Q  +I  +KQIH Q+LRT                    
Sbjct: 2   PLSIATTNTNTNIKH-INHLLNQSNSISHVKQIHAQILRT-------------------- 40

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN---SPYFPNEFT 141
                        I  PN +TWN LI++YS S    Q  ++  + +     +  FP++ T
Sbjct: 41  -------------IHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHT 87

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMI 200
           +PFV+KA A L     G+ +H  V+K  FE D +I NSLIHFYA CG L  A  VF  M 
Sbjct: 88  YPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMC 147

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             ++VVSWN MI  + + G ++  + ++ EM                             
Sbjct: 148 EWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM----------------------------- 178

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA---KMKKQGIKLNC 317
                          K   PD +T  SV+ AC  LG++ +G+ +HA   K   + +  + 
Sbjct: 179 --------------MKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDV 224

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            + T L+DMY KCG+L+ A +VF  +  RDV  W+++I GFA++G  + ALD F RM + 
Sbjct: 225 LVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKV 284

Query: 378 -KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            K+ PN++TF  VL AC+HSG+VDEG M+F  M   Y V P + HY C+VD+  RAG + 
Sbjct: 285 EKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQ 344

Query: 437 EAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELEPE-NHGALVLLSNI 494
           EA+  + +MPI P A +W +LL AC K H +VEL+E     + E       GA VLLS +
Sbjct: 345 EALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKV 404

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA   +W++V  LRK M   G+ K+PGCS IE+NG  H+F AG+++HP  K+IY  ++EI
Sbjct: 405 YASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEI 464

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             +L+S GY+P+ S    + E  + ++  + LHSERLAIA+GL++ +PS PIR+ KNLRV
Sbjct: 465 QEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRV 524

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH V KLIS++YN EI++RDR RFHHF+ G+CSCMDYW
Sbjct: 525 CNDCHKVTKLISRIYNVEIIVRDRVRFHHFKDGSCSCMDYW 565


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/668 (37%), Positives = 381/668 (57%), Gaps = 66/668 (9%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           +++   +Q+H  +L++G F +  S         L     ++ AR++FD++ + ++ +WN+
Sbjct: 209 RSVNGGEQLHGYILKSG-FGERNSVGNSLVAFYLKN-HRVDSARKVFDEMTERDVISWNS 266

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           +I  Y S+    +   +F+Q++++            F   A +RL+   +G+A+H   +K
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLIS--LGRAVHCFGVK 324

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F  +    N+L+  Y+ CGDL  A  VF  +  + VVS+ SMI+G+ + G   +A++L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----W---------------------- 261
           + EME E + PD  T+ AVL+ CA+ R L+ G+    W                      
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAK 444

Query: 262 ---PNEALSIFHELQLS-------------------------------KNVNPDEFTFVS 287
                EA  +F E+++                                K  +PDE T   
Sbjct: 445 CGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVAC 504

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL ACA L A D G +IH  + + G   + ++  SL+DMY KCG L  A  +F  + S+D
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD 564

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+ MIAG+ M+G G+EA+ LF++M++A ++P+ ++F ++L ACSHSGLVDEG  FFN
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFN 624

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M     + P V+HY C+VDML R G L +A  FIE MPI P A++WGALL  C+IH +V
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           +LAE     + ELEPEN G  VL++NIYA+  KW+ V  LRK +   GL+K PGCS IE+
Sbjct: 685 KLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEI 744

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G ++ F+AG+SS+P  ++I + L  + AR+   GY P   + L   EE + +E+AL  H
Sbjct: 745 KGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEME-KEEALCGH 803

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LA+A G+IS    + IR+ KNLRVCGDCH +AK +SKL  REI+LRD  RFH F+ G
Sbjct: 804 SEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDG 863

Query: 648 NCSCMDYW 655
           +CSC  +W
Sbjct: 864 HCSCRGFW 871



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 194/430 (45%), Gaps = 58/430 (13%)

Query: 38  PHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYA 91
           P  + S+++ C   K++K  K++   +   G   D    SKL   +T C       L+ A
Sbjct: 94  PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCG-----DLKEA 148

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
             +FDQ+       WN L+   + S +   S  +F +++ +S    + +TF  V K+ + 
Sbjct: 149 SRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSS 207

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           L     G+ +HG ++KS F +   + NSL+ FY     +  A  VF  + ++DV+SWNS+
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+G+V  G  EK + ++ +M    ++ D  T+V+V + CA  R +  GR           
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR----------- 316

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
                                           +H    K           +L+DMY+KCG
Sbjct: 317 -------------------------------AVHCFGVKACFSREDRFCNTLLDMYSKCG 345

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           +LD A  VF  +  R V  +++MIAG+A  G   EA+ LF  M+E  + P+  T T VL 
Sbjct: 346 DLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 392 ACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            C+ + L+DEG+     + E   G    V +   ++DM  + G + EA     +M +   
Sbjct: 406 CCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVKDI 463

Query: 451 ASVWGALLGA 460
            S W  ++G 
Sbjct: 464 IS-WNTVIGG 472



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%)

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           L +S   + D  T  SVL  CA   ++  G ++   ++  G  L+  L + L  MYT CG
Sbjct: 84  LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCG 143

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           +L +A  VF  VK      W+ ++   A  G    ++ LF +M  + V+ ++ TF+ V
Sbjct: 144 DLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 363/654 (55%), Gaps = 48/654 (7%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLF-TPCALGTFSSLEYAREMFD 96
           PH + S +K C      + +H   + +GL  DP+ AS L  +   LG   +   AR +FD
Sbjct: 20  PHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGA---ARSVFD 76

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL--------------------------- 129
           ++P+ N+  W+ LI  YS+  +   ++ +  Q+                           
Sbjct: 77  RMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALD 136

Query: 130 -------VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
                  +++  +FP+       + A   + +  VG+ +HG V+K+    D  +  +LI 
Sbjct: 137 AVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALID 196

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            Y  CG       VF      DV S N++++G  +     +A+ L+RE     V+ + V+
Sbjct: 197 MYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVS 256

Query: 243 MVAVLSACAKK-RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
             ++++ C +  RDLE       A+ +F  +Q S  V P+  T   VL A A + A+  G
Sbjct: 257 WTSIVACCVQNGRDLE-------AVDLFRTMQ-SIGVEPNSVTIPCVLPAFANVAALMHG 308

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
              H    ++G   + Y+ ++L+DMY KCG    A  +F  + SR+V  W+ MI G+AM+
Sbjct: 309 RSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMH 368

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G    A+ LF  MQ+ K KP+ VTFT VL ACS +GL +EGR +FN+M+  +G+ P ++H
Sbjct: 369 GDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEH 428

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y CMV +LGR+G LDEA + I +MP  P + +WG+LLG+C+++ NV LAE A   L +LE
Sbjct: 429 YACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLE 488

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P N G  VLLSNIYA    WD V+ +R  M+  GLKKE GCS IE+  ++H  LAG++SH
Sbjct: 489 PGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSH 548

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P+   I  KL+++   +   G+ P+R  +L  VEE++ ++  L +HSE+LA+A GLIS  
Sbjct: 549 PMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQE-KDNILAVHSEKLAVALGLISTR 607

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           P  P+R++KNLR+CGDCH   K IS    REI +RD  RFHHF+ G CSC DYW
Sbjct: 608 PGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD     S L +C    A  +   +HA     G+  + ++ +SL+  Y + G    A  V
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  ++V  WS +IAG++  G    A  L  +M+ A V+PN +T+  ++   + SG  
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
            +      +M    G  P     +C +  +G
Sbjct: 135 LDAVTALVRMHS-EGFFPDATGVSCALSAVG 164


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/625 (40%), Positives = 362/625 (57%), Gaps = 30/625 (4%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDP-----YSASKLFTPCALGTFSSLEYAREMFDQI 98
           L     + + L++IH  +L +G    P     + AS   +         L YAR +  + 
Sbjct: 99  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRR 158

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P   L   N+L+RA +    P  +F  F  L    P  P+ ++F F+++AA  L      
Sbjct: 159 PA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLVPDNYSFTFLVRAATALAAAAAS 213

Query: 159 Q--------AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                    ++H   ++     D  + +  +  YA  GD+  A   F  I   DVV   +
Sbjct: 214 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 273

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M+     GG  + A EL+  M       D V   A+++       +  GR   EAL +F 
Sbjct: 274 MVGALATGGEADAARELFDGMPQR----DHVAWNAMIAGY-----VHTGR-SREALRLFD 323

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E++ +      E T VS L+ACAQLGA++ G  +H+    +G++L+  L T+LIDMY+KC
Sbjct: 324 EMRHA-GAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC 382

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A+EVF ++  R+V+ W++ ++G AM G GR+ L LF RM+   V+PN VTF  VL
Sbjct: 383 GAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 442

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
             CS +GLVDEGR  F+ M+  +G+ P ++HY CMVD+ GRAG LD+AV FI  MP+ P 
Sbjct: 443 RGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPH 502

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALL A +IH+NVEL +YA   L+ +E +N  A VLLSNIYA +  W  VS +R  
Sbjct: 503 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 562

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+KK PGCS+IEV G++H+F  G  +HP  KEI   L E+  RL+  GY+ N   +
Sbjct: 563 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  +EEED +E A++LHSE+LAIA+GL+++     IRIVKNLRVC DCH   K+ISK++N
Sbjct: 623 LFDIEEED-KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFN 681

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFHHF+ G CSC DYW
Sbjct: 682 REIVMRDRNRFHHFKDGACSCKDYW 706


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/647 (37%), Positives = 383/647 (59%), Gaps = 23/647 (3%)

Query: 13  STPVI--SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           S+P+I  SLP++    T +  N     P  +   I    ++ ++ QIH  +LR  L   P
Sbjct: 3   SSPLIATSLPQNHATATASFRNPP---PEKLAVFIDNSHSVDEVLQIHAAILRHNLLIHP 59

Query: 71  -YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
            Y    L    A  +   + ++  +F Q   P+L+ +   I   S +    Q+F++++QL
Sbjct: 60  RYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 119

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + +S   PNEFTF  ++K+ +     + G+ IH  V+K     D +++  L+  YA  GD
Sbjct: 120 L-SSQINPNEFTFSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGD 174

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  VF  + ++ +VS  +MI+ + + G  E A  L+  M     + D V+   ++  
Sbjct: 175 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRM----CERDIVSWNVMIDG 230

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
            ++        +P++AL +F +L       PDE T V+ LSAC+Q+GA++ G  IH  + 
Sbjct: 231 YSQHG------FPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVN 284

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
              I+LN  + T+LIDMY+KCG+L++A+ VF+    +D+  W+ MI G+AM+G  ++AL 
Sbjct: 285 SSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALR 344

Query: 370 LFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           LF  MQ    ++P  +TF   L AC+H+GLV+EG   F  M   YG+ P ++HY C+V +
Sbjct: 345 LFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSL 404

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
           LGRAG L  A E I+ M +   + +W ++LG+CK+H    L +    +L+     N G  
Sbjct: 405 LGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIY 464

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VLLSNIYA  G ++ V+++R  M+  G+ KEPG S+IE++ ++H+F AG+  H   KEIY
Sbjct: 465 VLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIY 524

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
           + L ++  R+KS GYVPN + +L  +EE + +E++L +HSERLAIAYGLIS +P  P++I
Sbjct: 525 TMLRKMSERIKSHGYVPNTNTVLHDLEETE-KERSLQVHSERLAIAYGLISTKPGSPLKI 583

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLRVC DCHTV KLISK+  R+I++RDR RFHHF  G+CSC D+W
Sbjct: 584 FKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/654 (38%), Positives = 370/654 (56%), Gaps = 78/654 (11%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK 75
           L  HPN +T                 IK C ++  L   KQIH Q    G   D + AS 
Sbjct: 80  LSLHPNRSTFPCT-------------IKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASA 126

Query: 76  L---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ--LV 130
           L   ++ C       L  AR++FD+IP+ N+ +W ++I  Y  +    ++  +F +  LV
Sbjct: 127 LIDMYSKCGY-----LNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLV 181

Query: 131 YNSPY--------FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             + Y          +      VI A AR+    V + +HG+ +K  FE  L + N+L+ 
Sbjct: 182 DETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMD 241

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEV 241
            YA CG+++++  VF  + + DV SWNS+I+ + Q G   +A  L+ +M +   V+ + V
Sbjct: 242 AYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAV 301

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           T+ AVL ACA                                            GA+ IG
Sbjct: 302 TLSAVLLACAHS------------------------------------------GALQIG 319

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
             IH ++ K  ++ N  + TS++DMY KCG ++ A + F  +K ++V  W+ M+AG+ M+
Sbjct: 320 KCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMH 379

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G G+EA+ +F  M    +KPN +TF +VL ACSH+GL+ EG  +FN+M+  + V PG++H
Sbjct: 380 GHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEH 439

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y+CMVD+LGRAG L EA   I++M + P   VWG+LLGAC+IH+NVEL E +   L +L+
Sbjct: 440 YSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLD 499

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P N G  VLLSNIYA  G+WD+V  +R  M+  GL K PG S +E  G +H FL G+  H
Sbjct: 500 PSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEH 559

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P  ++IY  LDE+  +L+  GY+PN + +L  V+ E+ +   L +HSE+LA+A+G+++  
Sbjct: 560 PQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE-KGMVLRVHSEKLAVAFGIMNSV 618

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           P   I+I+KNLR+CGDCH   KLISK+ NREI++RD  RFHHF+ G CSC DYW
Sbjct: 619 PGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/605 (36%), Positives = 354/605 (58%), Gaps = 43/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +++ KQ H ++L+ GLF D + AS L   CAL  + S++YA  +F Q+ +P  + +NT++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           R +       ++ + + ++       P+ FT+P ++KA ARL     G  +H  ++K   
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVK-PDNFTYPTLLKACARLPAVEEGMQVHAHILKLGL 119

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E+D+F+ NSLI  Y  CG++ +   VF  + ++ V SW+++I+     G +   + L  +
Sbjct: 120 ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 179

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M  E                        G W  E                 E   VSVLS
Sbjct: 180 MSNE------------------------GYWRAE-----------------ESILVSVLS 198

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC  LGA+D+G  +H  + +    LN  + TSLI+MY KCG L K + +F  +  ++   
Sbjct: 199 ACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLS 258

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           +S MI+G AM+G GRE L +F+ M E  ++P+ + +  VL ACSH+GLV EG   FN+M+
Sbjct: 259 YSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMK 318

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             +G+ P ++HY CMVD++GRAG +DEA+E I+ MP+ P   +W +LL A K+H N++  
Sbjct: 319 LEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAG 378

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   L +L+ +     V+LSN+YA+  +W++V+  R +M   GL + PG S +EV  +
Sbjct: 379 EIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRK 438

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+F++ ++ HP  + +Y  L ++  +LK  GY P+ + +L  V+EE+ ++Q L+ HS++
Sbjct: 439 MHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEE-KKQRLSGHSQK 497

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIAY LI      P+RIV+NLR+C DCHT  KLIS +++REI +RDR+RFHHF+ G CS
Sbjct: 498 LAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACS 557

Query: 651 CMDYW 655
           C DYW
Sbjct: 558 CRDYW 562


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/625 (40%), Positives = 362/625 (57%), Gaps = 30/625 (4%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDP-----YSASKLFTPCALGTFSSLEYAREMFDQI 98
           L     + + L++IH  +L +G    P     + AS   +         L YAR +  + 
Sbjct: 92  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRR 151

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P   L   N+L+RA +    P  +F  F  L    P  P+ ++F F+++AA  L      
Sbjct: 152 PA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAATALAAAAAS 206

Query: 159 Q--------AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                    ++H   ++     D  + +  +  YA  GD+  A   F  I   DVV   +
Sbjct: 207 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 266

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M+     GG  + A EL+  M       D V   A+++       +  GR   EAL +F 
Sbjct: 267 MVGALATGGEADAARELFDGMPQR----DHVAWNAMIAGY-----VHTGR-SREALRLFD 316

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E++ +      E T VS L+ACAQLGA++ G  +H+    +G++L+  L T+LIDMY+KC
Sbjct: 317 EMRHA-GAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC 375

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A+EVF ++  R+V+ W++ ++G AM G GR+ L LF RM+   V+PN VTF  VL
Sbjct: 376 GAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 435

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
             CS +GLVDEGR  F+ M+  +G+ P ++HY CMVD+ GRAG LD+AV FI  MP+ P 
Sbjct: 436 RGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPH 495

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALL A +IH+NVEL +YA   L+ +E +N  A VLLSNIYA +  W  VS +R  
Sbjct: 496 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 555

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+KK PGCS+IEV G++H+F  G  +HP  KEI   L E+  RL+  GY+ N   +
Sbjct: 556 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 615

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  +EEED +E A++LHSE+LAIA+GL+++     IRIVKNLRVC DCH   K+ISK++N
Sbjct: 616 LFDIEEED-KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFN 674

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFHHF+ G CSC DYW
Sbjct: 675 REIVMRDRNRFHHFKDGACSCKDYW 699


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/625 (40%), Positives = 362/625 (57%), Gaps = 30/625 (4%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDP-----YSASKLFTPCALGTFSSLEYAREMFDQI 98
           L     + + L++IH  +L +G    P     + AS   +         L YAR +  + 
Sbjct: 99  LAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRR 158

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P   L   N+L+RA +    P  +F  F  L    P  P+ ++F F+++AA  L      
Sbjct: 159 PA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAATALAAAAAS 213

Query: 159 Q--------AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                    ++H   ++     D  + +  +  YA  GD+  A   F  I   DVV   +
Sbjct: 214 ALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTA 273

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M+     GG  + A EL+  M       D V   A+++       +  GR   EAL +F 
Sbjct: 274 MVGALATGGEADAARELFDGMPQR----DHVAWNAMIAGY-----VHTGR-SREALRLFD 323

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E++ +      E T VS L+ACAQLGA++ G  +H+    +G++L+  L T+LIDMY+KC
Sbjct: 324 EMRHA-GAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKC 382

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A+EVF ++  R+V+ W++ ++G AM G GR+ L LF RM+   V+PN VTF  VL
Sbjct: 383 GAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 442

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
             CS +GLVDEGR  F+ M+  +G+ P ++HY CMVD+ GRAG LD+AV FI  MP+ P 
Sbjct: 443 RGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPH 502

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VWGALL A +IH+NVEL +YA   L+ +E +N  A VLLSNIYA +  W  VS +R  
Sbjct: 503 EGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNM 562

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+KK PGCS+IEV G++H+F  G  +HP  KEI   L E+  RL+  GY+ N   +
Sbjct: 563 MKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  +EEED +E A++LHSE+LAIA+GL+++     IRIVKNLRVC DCH   K+ISK++N
Sbjct: 623 LFDIEEED-KEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFN 681

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFHHF+ G CSC DYW
Sbjct: 682 REIVMRDRNRFHHFKDGACSCKDYW 706


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/599 (40%), Positives = 359/599 (59%), Gaps = 48/599 (8%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQLK+IH  ++RTG        ++L     L     + YAR++FD++P+P ++ WNTL +
Sbjct: 25  KQLKKIHAVVIRTGFSEKNSLLTQLLENLVL--VGDMCYARQVFDEMPKPRIFLWNTLFK 82

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y  +  P +S +++ ++  +    P+EFT+PFV+KA ++L     G ++H  V+K+ FE
Sbjct: 83  GYVRNQLPFESVLLYKKM-RDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFE 141

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
               ++  L+  Y   G+L+ A  +F  +  KD+V+WN+ I+  VQ G    A+E + +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKM 201

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                             CA                          V  D FT VS+LSA
Sbjct: 202 ------------------CADA------------------------VQFDSFTVVSMLSA 219

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           C QLG++DIG +I+ + +K+ I+ N  +  + +DM+ KCG+ + A  +F  +K R+V  W
Sbjct: 220 CGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSW 279

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           STMI G+AM G   EAL LF+ MQ   ++PN VTF  VL ACSH+GLV+EG+ +F+ M  
Sbjct: 280 STMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVR 339

Query: 412 V--YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
           +    + P  +HY CMVD+LGR+GLL+EA EFI+KM + P   +WGALLGAC +H ++ L
Sbjct: 340 LNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMIL 399

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            +     L+E  P+     VLLSNIYA  GKWD V ++R  MR  G KK    SS+E +G
Sbjct: 400 GQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDG 459

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           +IH F  G+ SHP  K IY KLDEI+ ++++ GYVP+   +   VE E+ +E +L+ HSE
Sbjct: 460 KIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEE-KESSLSHHSE 518

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           +LAIA+GLI+     PIR++KNLR C DCH  +K +S+L +REI++RD+ RFHHFR G+
Sbjct: 519 KLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNGD 577


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/658 (37%), Positives = 368/658 (55%), Gaps = 58/658 (8%)

Query: 12  LSTPVISLPRH---PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           LS P+ + P     P  +   +        HP+   + QC  ++ L Q+H   +++GL  
Sbjct: 2   LSPPLAATPTPFLLPAKSKSPLAAAPAAQQHPLLPYLPQCTTLRALAQLHAAAVKSGLQA 61

Query: 69  DPYSASKLFTPC---ALGTFSSLEYAREMFDQIPQPNLYTW-NTLIRAYS-----SSAEP 119
            P   ++L T C        + L YAR++FD+IP P    W NTL+R Y+       A P
Sbjct: 62  HPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARP 121

Query: 120 I--QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
              ++  +F++++      P+ +TF  ++KA A       G+  HG+ +K    +  ++ 
Sbjct: 122 PAEEAARVFVRMLEEG-VAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVL 180

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
            +LI+ YA CGD   A  +F  +  + VVS+N+MI+  V+                    
Sbjct: 181 PTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSS------------------ 222

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                                   P EAL +F E+Q +K +     T +SVLSACA LGA
Sbjct: 223 -----------------------RPGEALVLFREMQ-AKGLKLTSVTLISVLSACALLGA 258

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +++G  IH  ++K  +     + T+LIDMY KCG+L+ A+ VF  ++SRD   WS MI  
Sbjct: 259 LELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVA 318

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +A +  GREA+ LF  M++  +KP+ VTF  VL ACSHSGLV EG  +F+ M   +G+VP
Sbjct: 319 YANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE-FGLVP 377

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
           G+KHY C+ D+L R+G LD A EFI+++PI P A +W  LL AC    + +L +     +
Sbjct: 378 GIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERI 437

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
           LEL+  + G  V+ SN+ A TG+W+ ++ +RK M   G+ K PGCSSIEV+  +H+F AG
Sbjct: 438 LELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAG 497

Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597
           +  HP   +    +D ++ +LK  GYVPN SH+  +   E+ +  +L  HSE+LAI++GL
Sbjct: 498 DGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGL 557

Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++  P   +R+VKNLRVC DCH++AKL+S ++NR I+LRD  RFHHF  G CSC DYW
Sbjct: 558 LNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/535 (42%), Positives = 336/535 (62%), Gaps = 45/535 (8%)

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
           F+ F   +  +   P++ +F  ++++ A   + ++G+A H  ++K  FE D+ +   L+ 
Sbjct: 14  FLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLD 73

Query: 183 FYAICGDLAMAYCVFVMIGKKDV--VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           FYA  G +  A  +F  + +++   V+WN+MIS +VQ G                     
Sbjct: 74  FYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCG--------------------- 112

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                           EFG     A+S+F ++Q S+NV P E T VS+LSACA LGA+D+
Sbjct: 113 ----------------EFG----TAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDM 151

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G  IH  ++ + +K++  L  +LIDMY KCG L+ A++VFH +  +++F W+++I G  M
Sbjct: 152 GEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGM 211

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G G EA+  F  M++  +KP+ VTF  +L  CSHSGL+  G+ +F++M  VYG+ PGV+
Sbjct: 212 NGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVE 271

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVD+LGRAG L EA+E I  MP+ P + V G+LL AC+IH++ +L E     LLEL
Sbjct: 272 HYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLEL 331

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           +P + G  V LSN+YA   +WD+V+  RK M   G+ K PGCSSIEVN  +H+F+AG++S
Sbjct: 332 DPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTS 391

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HP   +I + LDEI   LK  G+VPN +++L  +EEE+ +E A+  HSER+A+A+GL+S 
Sbjct: 392 HPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEE-KEGAIRYHSERIAVAFGLMST 450

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P + IR+VKNLR C DCH+  KLIS  + REI++RDR RFHHFR G+CSC DYW
Sbjct: 451 PPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 42  FSLIKQCKNIKQLKQI----HTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           FSLI +   I    Q+    H Q+++ G  +D    + L    A   +  +E AR +FD 
Sbjct: 33  FSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGY--VEEARNLFDN 90

Query: 98  IPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           + +   N  TWNT+I AY    E   +  +F Q+  +    P E T   ++ A A L   
Sbjct: 91  MTERNSNSVTWNTMISAYVQCGEFGTAISMFQQM-QSENVKPTEVTMVSLLSACAHLGAL 149

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G+ IHG +     + D+ + N+LI  Y  CG L  A  VF  + +K++  WNS+I G 
Sbjct: 150 DMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL 209

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG-RWPNEALSIF 269
              G  E+AI  +  ME E +KPD VT V +LS C+    L  G R+ +E L ++
Sbjct: 210 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVY 264


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 390/694 (56%), Gaps = 65/694 (9%)

Query: 4   NPPQHMETLSTPVISLPRHP------NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQI 57
           NPP+   T+S    + P+         PTT T  +          SLI   K I QL QI
Sbjct: 49  NPPEITTTISKTSENKPKSSLSALFIPPTTPTEAH--------FISLIHGSKTILQLHQI 100

Query: 58  HTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSA 117
           H Q++   L       ++L +  +L    S+ ++  +F+     NL+T+N LIR  ++++
Sbjct: 101 HAQIIIHNLSSSSLITTQLISSSSLR--KSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
               +   F +L+  S   P+  T+PFV+K+ A L    +G AIH M+++   E D F+ 
Sbjct: 159 HFFNAIFHF-RLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVR 217

Query: 178 NSLIHFYAICGDLAMAYCVF-----------------VMIG------------------- 201
            SL+  Y     L  A+ VF                 V+I                    
Sbjct: 218 VSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP 277

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           KK+ VSW+++I GF + G  ++A+EL+ +M  +NV    V+   ++   ++  D E    
Sbjct: 278 KKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNV----VSWTTMVDGFSRNGDSE---- 329

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             +ALS+F ++ L + V P+ FT VS LSACA++G ++ G++IH  +K  G+ L   L T
Sbjct: 330 --KALSMFSKM-LEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGT 386

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY KCGN++ A EVF   + + +  W+ MI G+A++G   +A+  F +M  A +KP
Sbjct: 387 ALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKP 446

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + V F  +L AC HSG VD G  FF+ M   Y + P +KHYT +VDMLGR+G L EA+ F
Sbjct: 447 DEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRF 506

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           IE+MP+ P   +WGAL  AC+ H+  ++A++A + LL+LEP + G  + LSN YA  G+W
Sbjct: 507 IERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQW 566

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++   +R  M+  G+ K  G S IEV G++H+F++G+  H   K I  KL+EI+A     
Sbjct: 567 EDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQ 626

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY+P    +L  +E+E+ +E  L  H E+LA+A+ LI   P   IRIVKNL+VCGDCH++
Sbjct: 627 GYIPGTEWVLHNMEQEE-KEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSL 685

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            K  SK+  REI+LRD  RFHHF+ G+CSC D+W
Sbjct: 686 MKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/619 (40%), Positives = 358/619 (57%), Gaps = 55/619 (8%)

Query: 43  SLIKQCKN--IKQL-KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S +K C    +K+L +Q+H+ +++  +  D + +  L   ++ C L     LE AR  F+
Sbjct: 364 SALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-----LEDARMAFN 418

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P+ +L  WN +I  YS   E +++  +F+++      F N+ T   ++K+ A L    
Sbjct: 419 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTAGLQVVH 477

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           V + +HG+ +KS F  D+++ NSLI  Y  C  +  A  +F      D+VS+ SMI+ + 
Sbjct: 478 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 537

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL +F E+Q   
Sbjct: 538 QYGQGE-----------------------------------------EALKLFLEMQ-DM 555

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + PD F   S+L+ACA L A + G Q+H  + K G  L+ +   SL++MY KCG++D A
Sbjct: 556 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 615

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              F  +  R +  WS MI G A +G GR+AL LF++M +  V PN +T  +VL AC+H+
Sbjct: 616 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 675

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV E +++F  ME ++G  P  +HY CM+D+LGRAG ++EAVE + KMP    ASVWGA
Sbjct: 676 GLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGA 735

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA +IH++VEL   A   L  LEPE  G  VLL+NIYA  GKW+NV+E+R+ MR S +
Sbjct: 736 LLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKV 795

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPG S IEV  +++ FL G+ SH   +EIY+KLDE+   +   GYVP     L  VE+
Sbjct: 796 KKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQ 855

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +E  L  HSE+LA+A+GLI+     PIR+ KNLRVC DCHT  K I K+ +REI++R
Sbjct: 856 SE-KELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVR 914

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G+CSC DYW
Sbjct: 915 DINRFHHFKDGSCSCGDYW 933



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 140/491 (28%), Positives = 232/491 (47%), Gaps = 75/491 (15%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+ QC   K L+   QIH  + ++GL  DP   +    L++ C      +  YAR++ D+
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKC-----RNFGYARKLVDE 116

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             +P+L +W+ LI  Y+ +     + M F ++ +      NEFTF  V+KA + +   R+
Sbjct: 117 SSEPDLVSWSALISGYAQNGLGGGALMAFHEM-HLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG+V+ S FE D+F++N+L+  YA C +   +  +F  I +++VVSWN++ S +VQ
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
             F                             C             EA+ +F+E+ LS  
Sbjct: 236 IDF-----------------------------CG------------EAVGLFYEMVLS-G 253

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P+EF+  S+++AC  L     G  IH  + K G   + +   +L+DMY K G+L  A+
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +K  D+  W+ +IAG  ++    +AL+L  +M+ + + PN  T ++ L AC+  G
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373

Query: 398 LVDEGRMFFN-----QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           L + GR   +      ME    V  G      +VDM  +  LL++A      +P      
Sbjct: 374 LKELGRQLHSSLMKMDMESDLFVSVG------LVDMYSKCDLLEDARMAFNLLP-EKDLI 426

Query: 453 VWGALL-GACKIHENVELAEYACSHLLELEPENHG-ALVLLSNIYAKTGKWDNVSELRKH 510
            W A++ G  +  E++E    A S  +E+  E  G     LS I   T     V   R+ 
Sbjct: 427 AWNAIISGYSQYWEDME----ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ- 481

Query: 511 MRVSGLKKEPG 521
             V GL  + G
Sbjct: 482 --VHGLSVKSG 490



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 56/350 (16%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           L L+    + P   ++  ++         R G  IH  + KS   DD  I N LI+ Y+ 
Sbjct: 44  LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSK 103

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           C +   A  +     + D+VSW+++ISG+ Q G    A+  + EM +  VK +E T  +V
Sbjct: 104 CRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSV 163

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           L AC+  +DL  G+                                          Q+H 
Sbjct: 164 LKACSIVKDLRIGK------------------------------------------QVHG 181

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            +   G + + ++  +L+ MY KC     +  +F  +  R+V  W+ + + +       E
Sbjct: 182 VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGE 241

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----- 421
           A+ LF  M  + +KPN  + ++++ AC  +GL D  R      + ++G +  + +     
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSR-----GKIIHGYLIKLGYDWDPF 294

Query: 422 -YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
               +VDM  + G L +A+   EK+   P    W A++  C +HE+ E A
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQA 343


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/564 (40%), Positives = 340/564 (60%), Gaps = 11/564 (1%)

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           EM D   QPNL +WN +I  ++ S    ++ ++FL + +   + P+  T   V+ A   L
Sbjct: 205 EMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDL 263

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G  IHG VIK     D  +S++LI  Y  C   +    VF  +   DV S N+ I
Sbjct: 264 EDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFI 323

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK-RDLEFGRWPNEALSIFHE 271
            G  + G  E ++ L+R+++ + ++ + V+  ++++ C++  RD+E       AL +F E
Sbjct: 324 FGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIE-------ALELFRE 376

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +Q++  V P+  T   +L AC  + A+  G   H    ++GI  + Y+ ++LIDMY KCG
Sbjct: 377 MQIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCG 435

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            +  +   F  + ++++  W+ +IAG+AM+G  +EA+++F  MQ +  KP+ ++FT VL 
Sbjct: 436 RIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLS 495

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACS SGL +EG  +FN M   YG+   V+HY CMV +L RAG L++A   I +MP+ P A
Sbjct: 496 ACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDA 555

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            VWGALL +C++H NV L E A   L ELEP N G  +LLSNIYA  G W+ V+ +R  M
Sbjct: 556 CVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMM 615

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           +  GL+K PGCS IEV  ++H  LAG+ SHP   +I  KLD++   +K  GY P  + +L
Sbjct: 616 KNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVL 675

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
           Q VEE+D +EQ L  HSE+LA+ +GL++  P  P++++KNLR+CGDCH V K IS    R
Sbjct: 676 QDVEEQD-KEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERR 734

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI +RD  RFHHF+ G CSC DYW
Sbjct: 735 EIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 203/398 (51%), Gaps = 12/398 (3%)

Query: 39  HPVFSLIKQCK-NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           H +F+ +     ++ Q +Q H  +L+TGLF D + A+KL +  A         A  + D 
Sbjct: 16  HTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNM--CFADATLVLDL 73

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+PN+++++TLI A+S   +   +   F Q++      P+    P  +KA A L   + 
Sbjct: 74  VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAGLSALKP 132

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + +HG+   S F+ D F+ +SL+H Y  C  +  A+ VF  + + DVVSW+++++ + +
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  ++A  L+ EM    V+P+ ++   +++              +EA+ +F ++ L + 
Sbjct: 193 QGCVDEAKRLFSEMGDSGVQPNLISWNGMIAG------FNHSGLYSEAVLMFLDMHL-RG 245

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             PD  T  SVL A   L  + +G+ IH  + KQG+  +  ++++LIDMY KC    +  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +   DV   +  I G +  G    +L LF ++++  ++ N V++T+++  CS +G
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
              E    F +M+ + GV P      C++   G    L
Sbjct: 366 RDIEALELFREMQ-IAGVKPNSVTIPCLLPACGNIAAL 402


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/625 (38%), Positives = 362/625 (57%), Gaps = 52/625 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL--GTFSSLEYAREMFD 96
           HPV S +  C +++ L Q+H   ++ GL   P   ++L T C       + L YAR++FD
Sbjct: 26  HPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHLAYARQVFD 85

Query: 97  QIPQPNLYTW-NTLIRAYSSSAEPIQS-----FMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ++P P    W NTL+R Y+ S+ P  S       +F++++      P+ +TF  ++KA A
Sbjct: 86  RVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEG-VAPDTYTFVSLLKACA 144

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                  G+  H + +K    D  ++  +LI+ YA CGD   A  +F       VVS+N+
Sbjct: 145 AARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNA 204

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI+  V+                                            P EAL +F 
Sbjct: 205 MIAAAVRSS-----------------------------------------RPGEALVLFR 223

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q  K + P   T +SVLSACA LGA+++G  +H  ++K G+     ++T+LIDMY KC
Sbjct: 224 EMQ-GKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKC 282

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G+L+ A++VF  ++S+D   WS MI  +A +G GREA+ LF  M++  +KP+ +TF  VL
Sbjct: 283 GSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVL 342

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSHSGLV EG  +F+ M+  +G+VPG+KHY C+ D+L R+G L+ A +FI+++PI P 
Sbjct: 343 YACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT 401

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LL AC  H + EL +     +L+L+  + G  V+ SN+ A TG W+ ++ +RK 
Sbjct: 402 PILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKL 461

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G+ K PGCSSIE++  +H+F AG+  HP  +E    +DE++ +LK  GYVPN SH+
Sbjct: 462 MSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHV 521

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
             +   E+ +  +L  HSE+LAIA+GL++  P   +R+VKNLRVC DCH++AKL+S ++N
Sbjct: 522 FHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFN 581

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R I+LRD  RFHHF  G CSC DYW
Sbjct: 582 RRIILRDLNRFHHFEEGICSCGDYW 606


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/570 (40%), Positives = 346/570 (60%), Gaps = 14/570 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            +++ A+ +FD+    NL  +NT++  Y+      ++  I  +++   P  P+  T    
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR-PDRVTMLSA 339

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I A+A+LV    G+  HG VI++  E    I N +I  Y  CG   MA  VF ++  K V
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWNS+ +GF++ G  E A E++ ++   N     V    ++S   +K   E      +A
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNA----VFWNTMISGLVQKSLFE------DA 449

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F E+Q  + +  D  T + + SAC  LGA ++   +H  ++K GI  +  L T+L+D
Sbjct: 450 IELFREMQ-GEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVD 508

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+ +CG+   A++VF+ +  RDV  W+  I   AM G G  A  LF++M    VKP+ V 
Sbjct: 509 MFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVL 568

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL ACSH G V++G   F+ ME  +G+ P ++HY CMVD+LGRAGLL EA + I+ M
Sbjct: 569 FVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSM 627

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+ P   VWG+LL AC++H+NVE+A YA   + EL P+  G  VLLSNIYA  GKW +V+
Sbjct: 628 PMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVA 687

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R ++R  G++K PG SS++VNG IH+F +G+ SHP    I   L E+  R    G++P
Sbjct: 688 RVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIP 747

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S++L  V+E++ +E  L+ HSE+LAIA+GLI+   S PIR+VKNLR+C DCH+ AK+ 
Sbjct: 748 DLSNVLLDVDEQE-KEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMA 806

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S +YNREI++RD  RFH FR G CSC DYW
Sbjct: 807 SIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 243/487 (49%), Gaps = 66/487 (13%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMF-----DQI 98
           ++ CK + QLKQ+H Q+ + GL   P + +KL    A + +  SL+YAR+ F     D  
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
               L+  N+LIR YSS+    ++ +++++++      PN +TFPFV+    ++  F  G
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +HG V+K   E+D+FI N LIHFYA CG +   + VF  + +++VVSW S+I G+ +G
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG 210

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
              ++A+ L+ EM    ++P  VTMV V+SACAK RDL+ G                   
Sbjct: 211 DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGE------------------ 252

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                        CA +G +             G+KLN  +  +L+DMY KCG +D A  
Sbjct: 253 -----------RVCAYIGEL-------------GLKLNKVMVNALVDMYMKCGAIDAAKR 288

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F     R++ +++T+++ +A  G  REAL +   M +   +P+ VT  + + A +   L
Sbjct: 289 LFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--L 346

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           VD   +F+ ++   Y +  G++ +      ++DM  + G  + A    + M      S W
Sbjct: 347 VD---LFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVS-W 402

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGAL--VLLSNIYAKTGKWDNVSELRKHMR 512
            +L      + +VE A    + +    PE +      ++S +  K+  +++  EL + M+
Sbjct: 403 NSLTAGFIRNGDVESAWEVFNQI----PERNAVFWNTMISGLVQKS-LFEDAIELFREMQ 457

Query: 513 VSGLKKE 519
             G+K +
Sbjct: 458 GEGIKAD 464



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 194/418 (46%), Gaps = 22/418 (5%)

Query: 56  QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           Q+H  +++ GL  D +  + L   +  C       +++  ++F+ + + N+ +W +LI  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECG-----HMDHGHKVFEGMSERNVVSWTSLICG 206

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y+    P ++  +F ++V  +   P+  T   VI A A+L    +G+ +   + +   + 
Sbjct: 207 YARGDRPKEAVSLFFEMV-EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKL 265

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           +  + N+L+  Y  CG +  A  +F     +++V +N+++S + + G   +A+ +  EM 
Sbjct: 266 NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEML 325

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            +  +PD VTM++ +SA A+  DL +G+       + H   +   +   +     ++   
Sbjct: 326 QQGPRPDRVTMLSAISASAQLVDLFYGK-------VCHGYVIRNGLEGWDSIGNVIIDMY 378

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
            + G  ++  ++   M  + +     LT   I    + G+++ A EVF+ +  R+   W+
Sbjct: 379 MKCGKPEMACRVFDLMSNKTVVSWNSLTAGFI----RNGDVESAWEVFNQIPERNAVFWN 434

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           TMI+G        +A++LF  MQ   +K + VT   +  AC + G  +  +     +E  
Sbjct: 435 TMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEK- 493

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            G+   ++  T +VDM  R G    A++   KM      S W A +G   +  N E A
Sbjct: 494 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGNGEGA 550


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 365/627 (58%), Gaps = 62/627 (9%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E AR++FD++   ++ +WN++I  Y S+    +   +F Q++       +  T   V+ 
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVA 259

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             +      +G+A+HG  IK+SF  +L ++N L+  Y+  G+L  A  VF  +G++ VVS
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 319

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------- 260
           W SMI+G+ + G  + ++ L+ EME E + PD  T+  +L ACA    LE G+       
Sbjct: 320 WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379

Query: 261 ----------------------WPNEALSIFHELQL-------------SKNVNPDE--- 282
                                    +A S+F E+Q+             SKN  P+E   
Sbjct: 380 ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALN 439

Query: 283 -------------FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                         T   +L ACA L A++ G +IH  + + G  L+ ++  +L+DMY K
Sbjct: 440 LFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 499

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG L  A  +F  +  +D+  W+ MIAG+ M+G G EA+  F+ M+ + ++P+ V+F ++
Sbjct: 500 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI 559

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL+DEG  FFN M     + P  +HY C+VD+L RAG L +A +FI+ MPI P
Sbjct: 560 LYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEP 619

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
            A++WGALL  C+I+ +V+LAE    H+ ELEPEN G  VLL+NIYA+  KW+ V +LR+
Sbjct: 620 DATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRE 679

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            +   GL+K PGCS IE+ G++H F+ G+SSHPL  +I   L +   R+K  G+ P   +
Sbjct: 680 RIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY 739

Query: 570 LLQLVEEEDVQ-EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
              L++ +D + E AL  HSE++A+A+G++S+ P + +R+ KNLRVCGDCH +AK +SK+
Sbjct: 740 --ALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKM 797

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             R+I+LRD  RFHHF+ G+CSC  +W
Sbjct: 798 VKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 166/343 (48%), Gaps = 12/343 (3%)

Query: 127 LQLVYNSPYFPNEF-TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           ++L+  SP    E  T+  V++  A L   + G+ IH ++  +  E D  + + L+  Y 
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV 147

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP------- 238
            CGDL     +F  +  + V  WN +++G+ + G F +++ L++ M    ++        
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL 207

Query: 239 -DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            DE+    V+S  +            + L +F ++ L   +N D  T VSV++ C+  G 
Sbjct: 208 FDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLL-LGINTDLATMVSVVAGCSNTGM 266

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           + +G  +H    K        L   L+DMY+K GNL+ A++VF T+  R V  W++MIAG
Sbjct: 267 LLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 326

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +A  G    ++ LF  M++  + P+  T T +L AC+ +GL++ G+   N ++    +  
Sbjct: 327 YAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE-NKMQS 385

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            +     ++DM  + G + +A     +M +    S W  ++G 
Sbjct: 386 DLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS-WNTMIGG 427


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/646 (38%), Positives = 365/646 (56%), Gaps = 78/646 (12%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C  +K  K   QIH  +L+ G   D Y  + L                        
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168

Query: 77  ---FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +E A++MFD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM- 227

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+    ++G+ +H  +       +L I N+LI  Y+ CG++ 
Sbjct: 228 KTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVE 287

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN+MI G+         + LY+E                     
Sbjct: 288 TACGLFQGLSNKDVISWNTMIGGYTH-------LNLYKE--------------------- 319

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L    NP++ T +S+L ACAQLGA+D G  IH  + K 
Sbjct: 320 -------------ALLLFQEM-LRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKR 365

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+     L TSLIDMY KCG+++ A +VF+++  R +   + MI GFAM+G    A D
Sbjct: 366 IKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFD 425

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++  ++P+ +TF  +L ACSHSG++D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLL 485

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G  GL  EA E I  M + P   +W +LL ACK+H NVEL E     L+++EPEN G+ V
Sbjct: 486 GHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYV 545

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V+ +R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 546 LLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  ++ AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-FKQGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 141/409 (34%), Positives = 233/409 (56%), Gaps = 14/409 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAREMFDQ 97
           HP  SL+  CK ++ L+ IH QM++TGL    Y+ S+L   C L   F  L YA  +F+ 
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFET 62

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I +PNL  WNT+ R ++ S++P+ +  +++ ++ +    PN +TFPF++K+ A+L   + 
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMI-SLGLLPNSYTFPFLLKSCAKLKVSKE 121

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           GQ IHG V+K  +E DL++  SLI  Y   G    A+ VF     +DVVS+ ++I+G+  
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G+ E A +++ E+ +++V    V+  A++S  A   +        EAL +F E+ +  N
Sbjct: 182 RGYIESAQKMFDEIPVKDV----VSWNAIISGYADTGN------NKEALDLFKEM-MKTN 230

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PDE T V+V+SACAQ G++ +G Q+H+ +   G+  N  +  +LID+Y+KCG ++ A 
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETAC 290

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  + ++DV  W+TMI G+      +EAL LF  M  +   PN VT  ++L AC+  G
Sbjct: 291 GLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLG 350

Query: 398 LVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            +D GR     ++  + GV       T ++DM  + G ++ A +    M
Sbjct: 351 AIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 37/301 (12%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           V S   Q  +I+  +Q+H+ +   GL  +    +    L++ C       +E A  +F  
Sbjct: 241 VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCG-----EVETACGLFQG 295

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   ++ +WNT+I  Y+      ++ ++F +++  S   PN+ T   ++ A A+L     
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEML-RSGENPNDVTMLSILPACAQLGAIDF 354

Query: 158 GQAIHGMVIK--SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           G+ IH  + K      +   +  SLI  YA CGD+  A+ VF  +  + + + N+MI GF
Sbjct: 355 GRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGF 414

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA---------- 265
              G    A +++  M    ++PD++T V +LSAC+    L+ GR    +          
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPK 474

Query: 266 -------------LSIFHELQLSKN---VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                        L +F E +   N   + PD   + S+L AC   G +++G     K+ 
Sbjct: 475 LEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLI 534

Query: 310 K 310
           K
Sbjct: 535 K 535


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 370/664 (55%), Gaps = 96/664 (14%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L YA  +F+ I +PNL  WNT+ R ++ +++ + +  +++ ++ +    PN ++FPF
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMI-SLGLLPNSYSFPF 70

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM----- 199
           ++K+ A+      GQ IHG V+K  ++ D++++ SLI  YA  G L  A+ VF       
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 200 --------------------------IGKKDVVSWNSMISGFVQGGFFEKA--------- 224
                                     I  KDVVSWN+MISG+V+   F++A         
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190

Query: 225 ----------------------IELYREMEM--------ENVKPDEV------------T 242
                                 IEL R++           N+K   V            T
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 243 MVAVLSACAKKRDLEFG---------RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
              +    AKK  + +              EAL +F E+ L    +P++ T +SVL ACA
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEM-LRSGESPNDVTMLSVLPACA 309

Query: 294 QLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
            LGA+DIG  IH  + K  +G+     L TSLIDMY KCG+++ A +VF ++ +R +  W
Sbjct: 310 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 369

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI GFAM+G    A DLFS+M++  + P+ +TF  +L ACSHSG++D GR  F  M  
Sbjct: 370 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 429

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            Y + P ++HY CM+D+LG  GL  EA E I  MP+ P   +W +LL ACK+H NVEL E
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGE 489

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
               +L+++EPEN G+ VLLSNIYA  G+WD V+++R  +   G+KK PGCSSIE++  +
Sbjct: 490 SYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVV 549

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           H+F+ G+  HP  +EIY  L+E+   ++  G+VP+ S +LQ +EEE  +E AL  HSE+L
Sbjct: 550 HEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEE-WKEGALRHHSEKL 608

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           AIA+GLIS +P   + IVKNLRVC +CH   KLISK+Y REI+ RDR R H  + G  SC
Sbjct: 609 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSC 668

Query: 652 MDYW 655
            DYW
Sbjct: 669 HDYW 672


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/623 (37%), Positives = 364/623 (58%), Gaps = 56/623 (8%)

Query: 38  PHPVFSLIKQCKNIKQL---KQIHTQMLRT---GLFFDPYSASKLFTPCALGTFSSLEYA 91
           P    SLI  C   + L   + IH  +  +   G  F   S   L+  C      ++  A
Sbjct: 64  PRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCG-----AVADA 118

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R +FD +P  ++ +W +LI  Y+ +  P ++  +   ++    + PN FTF  ++KAA  
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML-RGRFKPNGFTFASLLKAAGA 177

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                +G+ IH + +K  + DD+++ ++L+  YA CG + MA  VF  +  K+ VSWN  
Sbjct: 178 SASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWN-- 235

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
                                            A+++  A+K D E        L +F E
Sbjct: 236 ---------------------------------ALIAGFARKGDGE------TTLLMFAE 256

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +Q         FT+ SV SA A +GA++ G  +HA M K G +L+ ++  +++DMY K G
Sbjct: 257 MQ-RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           ++  A +VF  V  +DV  W++M+  FA YG GREA+  F  M++  V  N +TF ++L 
Sbjct: 316 SMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH GLV EG+ +F+ M+  Y + P + HY  +VD+LGRAGLL++A+ FI KMP+ P A
Sbjct: 376 ACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           +VWGALLG+C++H+N ++ ++A  H+ EL+P++ G  VLL NIYA TG+WD  + +RK M
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           + +G+KKEP CS +E+   +H F+A + +HP  +EIY K +EI  +++  GYVPN  ++L
Sbjct: 495 KATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVL 554

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V+E++ Q + L  HSE++A+A+ LI++     IRI+KN+R+CGDCH+  + ISK++ R
Sbjct: 555 LHVDEQERQAK-LQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKR 613

Query: 632 EILLRDRYRFHHFRGGNCSCMDY 654
           EI++RD  RFHHF  G+CSC DY
Sbjct: 614 EIVVRDTNRFHHFSSGSCSCGDY 636


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 364/606 (60%), Gaps = 41/606 (6%)

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A E+FD++   ++ +WN++I  Y S+    +   I+ Q++Y      +  T   V+  
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 122

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A+     +G+A+H + IKSSFE  +  SN+L+  Y+ CGDL  A  VF  +G+++VVSW
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 182

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE---- 264
            SMI+G+ + G+ + AI L ++ME E VK D V + ++L ACA+   L+ G+  ++    
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 242

Query: 265 -------------------------ALSIFHEL---------QLSKNVNPDEFTFVSVLS 290
                                    A S+F  +          +   + PD  T   +L 
Sbjct: 243 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILP 302

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA L A++ G +IH  + + G   + ++  +L+D+Y KCG L  A  +F  + S+D+  
Sbjct: 303 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 362

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MIAG+ M+G G EA+  F+ M++A ++P+ V+F ++L ACSHSGL+++G  FF  M+
Sbjct: 363 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 422

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+L R G L +A +FIE +PI P A++WGALL  C+I+ ++ELA
Sbjct: 423 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 482

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + ELEPEN G  VLL+NIYA+  KW+ V  +R+ +   GL+K PGCS IE+ G 
Sbjct: 483 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGR 542

Query: 531 IHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++ F++G  SSHP  K+I S L ++  ++K  GY P   + L +  +E  +E AL  HSE
Sbjct: 543 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL-INADEMQKEMALCGHSE 601

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL+++ P + IR+ KNLRVCGDCH +AK +SK   REI+LRD  RFHHF+ G C
Sbjct: 602 KLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYC 661

Query: 650 SCMDYW 655
           SC  +W
Sbjct: 662 SCRGFW 667



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 22/332 (6%)

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L+ FYA CGDL     VF  + KK+V  WN M+S + + G F+++I L++ M  + ++  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 240 EVTMVAVLSACAKKRDLEFGRW------------PNEALSIFHELQLSKNVNPDEFTFVS 287
                + L      RD+    W                L I+ ++ +   ++ D  T +S
Sbjct: 62  RSESASELFDKLCDRDVI--SWNSMISGYVSNGLTERGLGIYKQM-MYLGIDVDLATIIS 118

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL  CA+ G + +G  +H+   K   +     + +L+DMY+KCG+LD AL VF  +  R+
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W++MIAG+   G    A+ L  +M++  VK + V  T++L AC+ SG +D G+   +
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 238

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            ++    +   +     ++DM  + G ++ A      M +V     W  ++G  K     
Sbjct: 239 YIKA-NNMASNLFVCNALMDMYAKCGSMEGANSVFSTM-VVKDIISWNTMVGELKPDSRT 296

Query: 468 ELAEY-ACSHLLELE--PENHGALVLLSNIYA 496
                 AC+ L  LE   E HG   +L N Y+
Sbjct: 297 MACILPACASLSALERGKEIHG--YILRNGYS 326



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 142/316 (44%), Gaps = 57/316 (18%)

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ----PNLYTWNTLIRAYSS 115
           QM + G+  D  + + +   CA     SL+  +++ D I       NL+  N L+  Y+ 
Sbjct: 204 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 261

Query: 116 -----SAEPIQSFMIFLQLV-YNS---PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
                 A  + S M+   ++ +N+      P+  T   ++ A A L     G+ IHG ++
Sbjct: 262 CGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYIL 321

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +  D  ++N+L+  Y  CG L +A  +F MI  KD+VSW  MI+G+   G+  +AI 
Sbjct: 322 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 381

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + EM    ++PDEV+ +++L AC+    LE G W       F+ ++   N+ P      
Sbjct: 382 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-W-----RFFYIMKNDFNIEP------ 429

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-S 345
                                      KL  Y    ++D+ ++ GNL KA +   T+  +
Sbjct: 430 ---------------------------KLEHY--ACMVDLLSRTGNLSKAYKFIETLPIA 460

Query: 346 RDVFVWSTMIAGFAMY 361
            D  +W  ++ G  +Y
Sbjct: 461 PDATIWGALLCGCRIY 476


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/623 (40%), Positives = 361/623 (57%), Gaps = 52/623 (8%)

Query: 38  PH-PVFSLIKQCK-NIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREM 94
           PH P ++ + Q    +  L Q+H  ++ +G        +KL    CA G   S+ Y R++
Sbjct: 10  PHSPAYNFLLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAG---SISYTRQI 66

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           F  +P P+ + + +LI++ S S    I S   + ++V  S   P+ +TF  VIK+ A L 
Sbjct: 67  FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVL-SNVSPSNYTFTSVIKSCADLS 125

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             + G+ +HG V+   F  D+++  +L+  Y  CGDL  A  VF  I ++ +V+WNSMIS
Sbjct: 126 ALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMIS 185

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ Q GF ++AI L+  M+                                         
Sbjct: 186 GYEQNGFAKEAIGLFDRMK----------------------------------------- 204

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V PD  TFVSVLSACA LGA  +G  +H  +   G+ LN  L TSLI+MY +CGN+
Sbjct: 205 -ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNV 263

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            KA EVF ++K R+V  W+ MI+G+   G G +A++LF  M+   + PN++TF  VL AC
Sbjct: 264 SKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSAC 323

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGAS 452
           +H+GLV+EGR  F  +   Y +VPGV+H  C+VDMLGRAGLLDEA  FI E++P  P  +
Sbjct: 324 AHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPA 383

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +  A+LGACK+H+N +L      HLL  EPEN    V+LSNIYA  G+ D V  +R +M 
Sbjct: 384 ILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMI 443

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              LKK+ G S++EV+ + + F  G+ SH     IY  LDE++ +    GYVP    ++ 
Sbjct: 444 RKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMH 503

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            +EEE  +E AL  HSE+LAIA+GL+      PIRIVKNLR+C DCH+  K IS + +RE
Sbjct: 504 ELEEE-EREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSRE 562

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD+ RFHHF+ G+CSC+DYW
Sbjct: 563 IIVRDKLRFHHFKVGSCSCLDYW 585


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/653 (37%), Positives = 376/653 (57%), Gaps = 54/653 (8%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG--LFFDP 70
           S+P+ + P    P        H HH +P+ + +  C +++ L Q+H   ++ G  L   P
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 71  YSASKLFTPC---ALGTFSSLEYAREMFDQIPQPNLYTW-NTLIRAYSSSAEPI----QS 122
              ++L T C        + L YAR++FD+IP P    W NTL+R Y+          ++
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEA 122

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F++++      P+ +TF  ++KA A       G+  HG+ +K+   +  +++ +LI+
Sbjct: 123 ARVFVRMM-EEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLIN 181

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA CGD+  A  +F  +  + VVS+N+MI+  V+                         
Sbjct: 182 MYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSL---------------------- 219

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                              P EAL +F E+Q +K + P   T +SVLSACA LGA+++G 
Sbjct: 220 -------------------PGEALVLFREMQ-AKGLKPTSVTLISVLSACALLGALELGR 259

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            IH  ++K  +     + T+LIDMY KCG+L+ A+ VF  ++SRD   WS M+  +A +G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            GREA+ +F  M++  +KP+ VTF  VL ACSHSG+V EG  +F+ M   YG+V G+KHY
Sbjct: 320 YGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHY 378

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            C+ D+L R+G L+ A +FI+++PI P A +W  LL AC  H +V++ +     +LEL+ 
Sbjct: 379 GCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDD 438

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            + G  V+ SN+ A TG+W+ ++ +RK M   G+ K PGCSSIE++  +H+F AG+ SHP
Sbjct: 439 SHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHP 498

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
             +E    +DE++ +LK  GYVPN SH+  +   E+ +  +L  HSE+LAI++GL++  P
Sbjct: 499 HSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP 558

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              +RIVKNLRVC DCH++AKL+S ++NR I+LRD  RFHHF  G CSC DYW
Sbjct: 559 GTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/676 (37%), Positives = 375/676 (55%), Gaps = 70/676 (10%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SLI    +  QL+QIH ++L  GL F  +  +KL    A  ++  + +AR++FD +P+P 
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIH--ASSSYGDITFARQVFDDLPRPQ 83

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           ++ WN +IR YS +     + +++  +QL   S   P+ FTFP ++KA   L   ++G+ 
Sbjct: 84  VFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS---PDSFTFPHLLKACGGLSHLQMGRF 140

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQG 218
           +H  V +  FE D+F+ N LI  YA C  L  A  VF  + + ++ +VSW +++S + Q 
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW-------------PNEA 265
           G   +A+E++ +M   +VKPD V +V+VL+A    +DLE GR              P+  
Sbjct: 201 GEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLL 260

Query: 266 LSI-----------FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
           +S+             ++   K  +P+   + +++S  A+ G     + +  +M  + ++
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVR 320

Query: 315 LNCYLTTSLI-----------------------------------DMYTKCGNLDKALEV 339
            +    TS I                                   DM+ KCG+++ A  V
Sbjct: 321 PDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSV 380

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F     RDV VWS MI G+ ++G  REA+ L+  M+   V PN VTF  +L AC+HSG+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMV 440

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG  FFN+M   + + P  +HY C++D+LGRAG LD+A E I+ MP+ PG +VWGALL 
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           ACK H +VEL +YA   L  ++P N G  V LSN+YA    WD V+E+R  M+  GL K+
Sbjct: 500 ACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
            GCS +EV G +  F  G+ SHP  +EI  +++ I +RLK  G+V N+   L  + +E+ 
Sbjct: 560 VGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEA 619

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            E+ L  HSER+ IAYGLIS      +RI KNLR C +CH   KLISKL  REI++RD  
Sbjct: 620 -EETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTN 678

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC DYW
Sbjct: 679 RFHHFKDGVCSCGDYW 694



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 169/400 (42%), Gaps = 73/400 (18%)

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           L  NS    + F +  +I ++    Q R    IH  ++    +   F+   LIH  +  G
Sbjct: 12  LYTNSGIHSDSF-YASLIDSSTHKAQLR---QIHARLLVLGLQFSGFLITKLIHASSSYG 67

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           D+  A  VF  + +  V  WN++I G+ +   F+ A+ +Y +M++  V PD  T   +L 
Sbjct: 68  DITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLK 127

Query: 249 ACAKKRDLEFGRWPNE-----------------------------ALSIFHELQLSKNVN 279
           AC     L+ GR+ +                              A ++F  L L +   
Sbjct: 128 ACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTI 187

Query: 280 PDEFTFVSVLSACAQLG-------------AMDI----------------------GVQI 304
               ++ +++SA AQ G              MD+                      G  I
Sbjct: 188 ---VSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSI 244

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           HA + K G++    L  SL  MY KCG +  A  +F  +KS ++ +W+ MI+G+A  G  
Sbjct: 245 HASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFA 304

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
           ++A+DLF  M    V+P+ ++ T+ + AC+  G +++ R + ++          V   + 
Sbjct: 305 KDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQAR-WMDEYVSRSDYRDDVFISSA 363

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           ++DM  + G ++ A    ++  +     VW A++    +H
Sbjct: 364 LIDMFAKCGSVECARSVFDR-TLDRDVVVWSAMIVGYGLH 402


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/616 (39%), Positives = 352/616 (57%), Gaps = 18/616 (2%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SL+K    +       +IH    + G   DP+  + L    A  +   +  AR +FD++ 
Sbjct: 126 SLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYA--SCRRIMDARLLFDKMC 183

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P+   WN +I  Y  +     +  +F + + +S   P+      V+ A         G+
Sbjct: 184 HPDAVAWNMIIDGYCQNGHYDDALRLF-EDMRSSDMKPDSVILCTVLSACGHAGNLSYGR 242

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  V  + +  D  +  +LI+ YA CG + +A  ++  +  K ++   +M+SG+ + G
Sbjct: 243 TIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLG 302

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             + A  ++ +M    ++ D V   A++S  A+         P EAL +F E+ L K   
Sbjct: 303 MVKDARFIFDQM----IERDLVCWSAMISGYAESDQ------PQEALKLFDEM-LQKRSV 351

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD+ T +SV+SAC+ +GA+     IH  + + G      +  +LIDMY KCGNL KA EV
Sbjct: 352 PDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREV 411

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  ++V  WS+MI  FAM+G    A+ LF RM+E  ++PN VTF  VL AC H+GLV
Sbjct: 412 FENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLV 471

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG   F+ M   +G+ P  +HY CMVD+  RA  L +A+E IE MP  P   +WG+L+ 
Sbjct: 472 EEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMS 531

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H   EL E+A   LLELEP++ GALV+LSNIYAK  +W++V  +RK M   G+ KE
Sbjct: 532 ACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKE 591

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
              S IE+N ++H F+  +  H    EIY KLDE+V++LK  GY P+ S +L  +EEED 
Sbjct: 592 KASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDK 651

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSE+LA+ YGLIS      IRIVKNLR+C DCH+  KL+SK+Y  EI++RDR 
Sbjct: 652 KELVL-WHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRT 710

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHH  GG CSC DYW
Sbjct: 711 RFHHCSGGICSCRDYW 726



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 217/450 (48%), Gaps = 22/450 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE------MFDQIPQPNLYTW 106
            LKQIH Q+L +     P + + L +  AL   +    +        +F QIP P+ +  
Sbjct: 31  HLKQIHAQILHSNT--TPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFS 88

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N L+R  S S+ P ++  ++  L   + +  + F+FP ++KA +++  F  G  IHG+  
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K  F DD FI   LI  YA C  +  A  +F  +   D V+WN +I G+ Q G ++ A+ 
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ +M   ++KPD V +  VLSAC    +L +GR         HE         D     
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGR-------TIHEFVKDNGYAIDSHLQT 261

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           ++++  A  GAMD+  +I+  +  + +     ++T+++  Y K G +  A  +F  +  R
Sbjct: 262 ALINMYANCGAMDLARKIYDGLSSKHL----IVSTAMLSGYAKLGMVKDARFIFDQMIER 317

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D+  WS MI+G+A     +EAL LF  M + +  P+ +T  +V+ ACSH G + +     
Sbjct: 318 DLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIH 377

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             ++   G    +     ++DM  + G L +A E  E MP     S W +++ A  +H N
Sbjct: 378 TYVDRS-GFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMINAFAMHGN 435

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYA 496
            + A      + E+  E +G +  +  +YA
Sbjct: 436 ADSAIKLFRRMKEVNIEPNG-VTFIGVLYA 464


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/646 (39%), Positives = 370/646 (57%), Gaps = 78/646 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C   K  ++ +QIH  +L+ G   D Y  + L                        
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 77  ---FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  SS  +  A+EMFD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM- 190

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y+ CG + 
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVE 250

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDVVSWN++I G+         + LY+E                     
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTH-------MNLYKE--------------------- 282

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                        AL +F E+ L    +P++ T VS+L ACA LGA+DIG  IH  + K+
Sbjct: 283 -------------ALLLFQEM-LRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKK 328

Query: 312 --GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
              +     L TSLIDMY KCG+++ A +VF+++  + +  W+ MI GFAM+G      D
Sbjct: 329 LKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFD 388

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LFSRM++  ++P+ +TF  +L ACSHSG +D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 389 LFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLL 448

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I+ MP+ P   +W +LL AC+ H N+ELAE    +L+++EPEN G+ V
Sbjct: 449 GHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYV 508

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+WD V+++R  +   G+KK PGCSSIE++ E+H+F+ G+  HP  +EIY 
Sbjct: 509 LLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYG 568

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+ A L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 569 MLEEMEALLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 627

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KL+SK+Y REI+ RDR RFHHFR G CSC D+W
Sbjct: 628 KNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 219/395 (55%), Gaps = 19/395 (4%)

Query: 74  SKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
           SKL   C L   F    YA  +F  I +PN   WNT++R Y+ S++P+ +  +++ ++ +
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI-S 59

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
               PN +TFPF++K+ A+   F  GQ IHG V+K  +E DL++  SLI  YA  G L  
Sbjct: 60  LGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A+ VF     +DVVS+ ++I+G+   G    A E++ E+ +++V    V+  A++S  A 
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDV----VSWNAMISGYA- 174

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
               E G +  EAL +F E+ +  NV PDE T V+VLSACAQ  ++++G Q+H+ +   G
Sbjct: 175 ----ETGSY-KEALELFKEM-MKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHG 228

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
              N  +  +LID+Y+KCG ++ A  +F  +  +DV  W+T+I G+      +EAL LF 
Sbjct: 229 FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQ 288

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGR---MFFNQMEPVYGVVPGVKHYTCMVDML 429
            M  +   PN VT  ++L AC+H G +D GR   ++ ++        P ++  T ++DM 
Sbjct: 289 EMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMY 346

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            + G ++ A +    M +    S W A++    +H
Sbjct: 347 AKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMH 380



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 16/211 (7%)

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A+ VF T++  +  +W+TM+ G+A+      AL L+  M    + PN+ TF  +L +C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           S   +EG+     +  + G  P +  +T ++ M  + G L++A +  ++       S + 
Sbjct: 79  SKAFEEGQQIHGHVLKL-GYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVS-YT 136

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           AL+       N+  A+     +   +  +  A++   + YA+TG +    EL K M  + 
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMI---SGYAETGSYKEALELFKEMMKTN 193

Query: 516 LKKEPG--------CS---SIEVNGEIHKFL 535
           ++ + G        C+   S+E+  ++H ++
Sbjct: 194 VRPDEGTMVTVLSACAQSRSVELGRQVHSWI 224


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 351/598 (58%), Gaps = 50/598 (8%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH  +L+ GL  D + ++ L        F  L+ A+ +FDQ+   +L +WN++I AY  +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALIN--MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 117 AEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED-D 173
            +P  +   F  +QL       P+  T   +    ++L   R+ ++I G VI+  + D D
Sbjct: 302 NDPSTALRFFKGMQL---GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + I N+L++ YA  G +  A+ VF  + +KD +SWN++++G+ Q G   +AI+ Y     
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYN---- 414

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                       ++  C                         ++  P++ T+VS++ A +
Sbjct: 415 ------------MMEEC-------------------------RDTIPNQGTWVSIIPAYS 437

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            +GA+  G++IHAK+ K  + L+ ++ T LID+Y KCG L+ A+ +F+ +       W+ 
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +IA   ++G G EAL LF  M   +VK + +TF ++L ACSHSGLVDEG+  F+ M+  Y
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P +KHY CMVD+LGRAG L++A E +  MPI P AS+WGALL ACKI+ N EL   A
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              LLE++ EN G  VLLSNIYA T KW+ V ++R   R  GL+K PG SS+ V  +   
Sbjct: 618 SDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F  G  +HP   EIY +L  + A++KS GYVP+ S + Q + EED +EQ LN HSERLAI
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDI-EEDEKEQILNSHSERLAI 736

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+G+IS  P  PIRI KNLRVCGDCH   K IS++  REI++RD  RFHHF+ G CSC
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 227/494 (45%), Gaps = 75/494 (15%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +L   C N+   K++H  +L  G   +   ++KL       T   +  +R  FD I + N
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYV--THGDISLSRSTFDYIHKKN 84

Query: 103 LYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           +++WN++I AY       E +        +       P+ +TFP ++KA   LV    G+
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GK 141

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  V K  FEDD+F++ SL+H Y+  G L +A+ VFV +  KDV SWN+MISGF Q G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL----------------------- 256
               A+ +   M+ E VK D +T+ ++L  CA+  D+                       
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 257 -------EFGR------------------W------------PNEALSIFHELQLSKNVN 279
                  +FGR                  W            P+ AL  F  +QL   + 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLG-GIR 320

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           PD  T VS+ S  +QL    I   I    ++++ +  +  +  +L++MY K G ++ A  
Sbjct: 321 PDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHT 380

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSG 397
           VF  +  +D   W+T++ G+   G   EA+D ++ M+E +   PN  T+ +++ A SH G
Sbjct: 381 VFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVG 440

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGA 456
            + +G     ++     +   V   TC++D+ G+ G L++A+    ++P     SV W A
Sbjct: 441 ALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP--RDTSVPWNA 497

Query: 457 LLGACKIHENVELA 470
           ++ +  IH   E A
Sbjct: 498 IIASLGIHGRGEEA 511



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F ++ ++C  + A     ++HA +   G   N  L+T LI++Y   G++  +   F  + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 345 SRDVFVWSTMIAGFAMYGCGREALD----LFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
            +++F W+++I+ +  +G   EA++    LFS      ++P+  TF  +L AC    LVD
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD 139

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-G 459
             ++     +   G    V     +V +  R G+LD A +    MP+    S W A++ G
Sbjct: 140 GKKVHCCVFK--MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISG 196

Query: 460 ACK 462
            C+
Sbjct: 197 FCQ 199


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 348/561 (62%), Gaps = 21/561 (3%)

Query: 104 YTWNTLIRAYSSSAEPIQS---FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           + WN +IRA   +  P Q      ++ ++ ++    P+  TFPF++ +    +   +GQ 
Sbjct: 24  FVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHC-VSPDFHTFPFLLPSFHNPIHLPLGQR 82

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
            H  ++    + D F+  SL++ Y+ CGDL+ A  +F     KD+ +WNS+++ + + G 
Sbjct: 83  THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--- 277
              A +L+ EM   NV         +  +C     +  G++  EAL +F E+QL K    
Sbjct: 143 INHARKLFDEMPERNV---------ISWSCLINGYVMCGKY-KEALDLFREMQLPKPNEV 192

Query: 278 -VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V+P++FT  +VLSAC +LGA++ G  +H+ + K G++++  L T+LIDMY KCG+L++A
Sbjct: 193 FVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERA 252

Query: 337 LEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACS 394
             VF  + S+ DV  +S MI   AMYG   E   +FS M  +  + PN+VTF  +L AC 
Sbjct: 253 KRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACV 312

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GL+++G+ +F  M   +G+ P ++HY CMVD+ GR+GL+ EA  FI  MP+ P   +W
Sbjct: 313 HRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIW 372

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LL   ++  +++  E A   L+EL+P N GA VLLSN+YAKTG+W  V  +R  M V 
Sbjct: 373 GSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVK 432

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KK PGCS +EV G +H+F+ G+ S    + IY+ L+EI+ RL+  GYV +   +L  +
Sbjct: 433 GIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDL 492

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EE+D +E AL+ HSE+LAIA+ L+   P  P+RI+KNLR+CGDCH V K+ISKL++REI+
Sbjct: 493 EEKD-KEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIV 551

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF  G+CSC D+W
Sbjct: 552 VRDCNRFHHFSDGSCSCRDFW 572



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSS------------------- 87
           ++ H Q+L  GL  DP+  + L   ++ C     AL  F                     
Sbjct: 81  QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKA 140

Query: 88  --LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP----YFPNEFT 141
             + +AR++FD++P+ N+ +W+ LI  Y    +  ++  +F ++    P      PN+FT
Sbjct: 141 GLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFT 200

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A  RL     G+ +H  + K   E D+ +  +LI  YA CG L  A  VF  +G
Sbjct: 201 MSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALG 260

Query: 202 -KKDVVSWNSMISGFVQGGFFEKAIELYREMEME-NVKPDEVTMVAVLSACAKKRDLEFG 259
            KKDV ++++MI      G  ++  +++ EM    N+ P+ VT V +L AC  +  +  G
Sbjct: 261 SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG 320

Query: 260 R 260
           +
Sbjct: 321 K 321


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/646 (38%), Positives = 372/646 (57%), Gaps = 78/646 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY----------------SASKLFTPCA--- 81
           L+K C   K  ++ +QIH  +L+ G   D Y                 A K+F   +   
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153

Query: 82  -------LGTFSSLEY---AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
                  +  ++S  Y   A++MFD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 154 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM- 212

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y  CG++ 
Sbjct: 213 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 272

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTH-------MNLYKE--------------------- 304

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L    +P++ T +S+L ACA LGA++IG  IH  + K 
Sbjct: 305 -------------ALLLFQEM-LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 350

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+       TSLIDMY KCG+++ A +VF ++ +R +  W+ MI GFAM+G    A D
Sbjct: 351 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 410

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++ +++P+ +TF  +L ACSHSG++D GR  F  M+  Y + P ++HY CM+D+L
Sbjct: 411 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 470

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACK+H NVEL E    +L+++EP+N G+ V
Sbjct: 471 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYV 530

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V+++R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 531 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 590

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 591 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 649

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 650 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 247/446 (55%), Gaps = 21/446 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIR 111
            L+ IH QM++TGL    Y+ SKL   C L   F  L YA  +F+ I +PNL  WNT+ R
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            ++ S++P+ +  +++ ++ +    PN +TFPF++K+ A+   FR GQ IHG V+K  ++
Sbjct: 62  GHALSSDPVSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            DL++  SLI  Y   G L  A  VF     +DVVS+ ++I+G+   G+   A +++ E+
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
            +++V    V+  A++S  A+  +        EAL +F E+ +  NV PDE T VSV+SA
Sbjct: 181 PIKDV----VSWNAMISGYAETGN------NKEALELFKEM-MKTNVRPDESTMVSVVSA 229

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CAQ  ++++G Q+H+ +   G   N  +  +LID+Y KCG ++ A  +F  +  +DV  W
Sbjct: 230 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 289

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR---MFFNQ 408
           +T+I G+      +EAL LF  M  +   PN VT  ++L AC+H G ++ GR   ++ N+
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK 349

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
              + GV     H T ++DM  + G ++ A +  + + +    S W A++    +H    
Sbjct: 350 --RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRAN 406

Query: 469 LAEYACSHLL--ELEPENHGALVLLS 492
            A    S +   E+EP++   + LLS
Sbjct: 407 AAFDIFSRMRKNEIEPDDITFVGLLS 432


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/626 (39%), Positives = 360/626 (57%), Gaps = 37/626 (5%)

Query: 41  VFSLIKQCKN-IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-LEYAREMFDQI 98
           + SL+  C   +K  KQIHT +  TGL   P+   KL   CA+      L Y+  +F   
Sbjct: 12  LLSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHF 71

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR-LVQFRV 157
           P P+ + +NTLIR+ S S+ P+ S   F+QL+ +    P+ F+F F +K  A      R 
Sbjct: 72  PNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQ 131

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +H    +  F+D +F+  +LI  YA CG    A  VF  + + +VV+WN++++   +
Sbjct: 132 GIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFR 191

Query: 218 GGF-------FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
            G        F     ++ EM+M     D+ +   ++   AK          ++A   F 
Sbjct: 192 CGMWRVLGVSFGWREVVFCEMKMR----DDASWSTMIVGFAKSGSF------HDAFGFFK 241

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           EL   +N  P E +   VLSACAQ GA + G  +H  M+K G      +  +LID Y+KC
Sbjct: 242 ELLRDRN-RPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKC 300

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           GN+D A  VF+                 AM+G   EA+ +F  M+E+ V+P+ VTF ++L
Sbjct: 301 GNVDMAKLVFNI--------------SLAMHGRADEAIRVFHEMEESGVRPDGVTFISLL 346

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSHSGLV++G   F++M   YG+ P ++HY CMVD+ GRA  L +A EFI +MPI+P 
Sbjct: 347 YACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPN 406

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LLGAC IH N+ELAE   + L E++P N G  VLLSN+YA  GKW +V+ +R+ 
Sbjct: 407 VIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRT 466

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSH 569
           M    +KK PG S IE++   + F+AGE  + + KE + KL EI+ RL+   GY P    
Sbjct: 467 MIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRS 526

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  VEEE+ +E +++ HSE+LA A+G+  +   + +RIVKNLRVCGDCHTV KLISK+Y
Sbjct: 527 VLHDVEEEE-KEDSMSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVY 585

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
             EI++RDR RFH F+GG CSC DYW
Sbjct: 586 QVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 355/601 (59%), Gaps = 47/601 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H ++L+ G   D ++ + L        F  L  A ++FD++P+ N  ++ TLI+ Y+
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S   +++  +F++L  +    PN+FTF  V++A A +    +G  IH  VIK     D+
Sbjct: 116 ESVRFLEAIELFVRL--HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDV 173

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+SN+L+  YA CG +  +  +F     ++ V+WN++I G VQ G  EKA+ L+  M   
Sbjct: 174 FVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNM--- 230

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                                  L   V   E T+ S L ACA 
Sbjct: 231 ---------------------------------------LEYRVQATEVTYSSALRACAS 251

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L A++ G+QIH+   K     +  +T +LIDMY KCG++  A  VF  +  +D   W+ M
Sbjct: 252 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAM 311

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I+G++M+G GREAL +F +MQE +VKP+ +TF  VL AC+++GL+D+G+ +F  M   +G
Sbjct: 312 ISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHG 371

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++HYTCMV +LGR G LD+AV+ I+++P  P   VW ALLGAC IH ++EL   + 
Sbjct: 372 IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISA 431

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             +LE+EP++    VLLSN+YA   +WDNV+ +RK+M+  G+KKEPG S IE  G +H F
Sbjct: 432 QRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSF 491

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
             G++SHP  + I   L+ +  + K  GY+PN + +L  VE+E+ +E+ L +HSERLA++
Sbjct: 492 TVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEE-KERLLWVHSERLALS 550

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +G+I      PIRI+KNLR+C DCH   K ISK+  REI++RD  RFHHF+ G CSC DY
Sbjct: 551 FGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDY 610

Query: 655 W 655
           W
Sbjct: 611 W 611



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 11/176 (6%)

Query: 277 NVNPDEFT---FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           +V+P EF    + + L  C Q      G  +H ++ K+G  L+ +    L++MY K   L
Sbjct: 30  HVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFL 89

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A ++F  +  R+   + T+I G+A      EA++LF R+   +V PN  TF +VL AC
Sbjct: 90  CDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQAC 148

Query: 394 SHSGLVDEGRMFFNQME---PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +      EG    NQ+       G+   V     ++D+  + G ++ ++E   + P
Sbjct: 149 A----TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESP 200


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/646 (37%), Positives = 365/646 (56%), Gaps = 78/646 (12%)

Query: 44  LIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C      K+ +Q+H Q+L+ G   D Y  + L                        
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168

Query: 77  ---FTPCALGTFS--SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +E A +MFD+IP  ++ +WN  I  Y+ +    ++  +F +++ 
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMM- 227

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y+ CG+L 
Sbjct: 228 KTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELE 287

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+     +++A+ L+++M                    
Sbjct: 288 TACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM-------------------- 327

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                                 L     P++ T +S+LSACA LGA+DIG  IH  + K 
Sbjct: 328 ----------------------LRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKR 365

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+     L TSLIDMY KCG+++ A +VF ++ +R +  W+ MI GFAM+G    A D
Sbjct: 366 LKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++  ++P+ +TF  +L ACSHSG++D GR  F  M   Y ++P ++HY CM+D+ 
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLX 485

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA + I  M + P   +W +LL ACK+H NVEL E    +L+++EPEN G+ V
Sbjct: 486 GHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYV 545

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA   +W+ V++ R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 546 LLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 255/458 (55%), Gaps = 17/458 (3%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQ 97
           HP  SL+  CK ++ L+ IH QM++TGL    Y+ SKL   C L   F  L YA  +FD 
Sbjct: 3   HPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDT 62

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I +P L  WNT+ R ++ S++P+ +  +++ +V +    PN +TFPF++K+ A+   F+ 
Sbjct: 63  IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMV-SLGLLPNSYTFPFLLKSCAKSXAFKE 121

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           GQ +HG V+K  F+ DL+I  SLI  Y   G L  A  V      +DVVS+ ++I+G+  
Sbjct: 122 GQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYAS 181

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E A +++ E+ +++V    V+  A +S  A     E G +  EAL +F ++ +  N
Sbjct: 182 RGXIESAHKMFDEIPVKDV----VSWNAXISGYA-----ETGNY-KEALELFKKM-MKTN 230

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PDE T V+VLSACAQ G++++G Q+H+ +   G   N  +  +LID+Y+KCG L+ A 
Sbjct: 231 VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  + ++DV  W+T+I G+      +EAL LF  M  +  KPN VT  ++L AC+H G
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLG 350

Query: 398 LVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
            +D GR     ++  + GV       T ++DM  + G ++ A +  + M +    S W A
Sbjct: 351 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNA 409

Query: 457 LLGACKIHENVELAEYACSHLLE--LEPENHGALVLLS 492
           ++    +H     A    S + +  +EP++   + LLS
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/570 (40%), Positives = 343/570 (60%), Gaps = 13/570 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            +++ AR++FD+    NL  +NT++  Y       +   +  +++ + P  P+  T    
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR-PDRITMLSA 347

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A + L     G+  HG V+++  E    + N++I+ Y  CG   MA  VF  +  K  
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWNS+I+GFV+ G  E A +++  M       D V+   ++ A  ++   +      EA
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMP----DSDLVSWNTMIGALVQESMFK------EA 457

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  +Q S+ +  D+ T V V SAC  LGA+D+   IH  +KK+ I  + +L T+L+D
Sbjct: 458 IELFRVMQ-SEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVD 516

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+ +CG+   A++VF+ +  RDV  W+  I   AM G G  A++LF  M +  +KP+ V 
Sbjct: 517 MFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVV 576

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  +L A SH GLV++G   F  M+ +YG+ P   HY CMVD+LGRAGLL EA+  I  M
Sbjct: 577 FVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSM 636

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
            + P   +WG+LL AC++H+NV++A YA   + EL+PE  G  VLLSNIYA  G+WD+V+
Sbjct: 637 QMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVA 696

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R H++  G  K PG SSIE+NG+I +F  G+ SHP    I   L EI  RL+  GYVP
Sbjct: 697 KVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVP 756

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + +++L  V E++ +E  L+ HSE+LAIA+ LIS     PIR+ KNLR+C DCH+ AKL+
Sbjct: 757 DLTNVLLDVNEKE-KEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLV 815

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK Y+REI++RD  RFH F+ G CSC DYW
Sbjct: 816 SKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 206/402 (51%), Gaps = 52/402 (12%)

Query: 8   HMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF 67
           H+ TL     +    PN   L +   H+  P   F   K+CK + +LKQ+H+Q+ + GL 
Sbjct: 6   HLSTLIPATPTSVALPNQNELKILTKHRSSPTGSF---KKCKTMTELKQLHSQITKNGLN 62

Query: 68  FDPYSASKLFTPCA-LGTFSSLEYAREMFDQIPQPNL-----YTWNTLIRAYSSSAEPIQ 121
             P S + L + C  +GTF SLEYA++  +   + N      Y +++LIR +S+     +
Sbjct: 63  HHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYK 122

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           + ++F QL+      P+ FTFPFV+ A  +      G  +HG ++K  FE D+F+ NSLI
Sbjct: 123 AIVVFRQLMCMGA-VPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLI 181

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
           HFY  CG++     VF  + +++VVSW S+I G+ + G +++A+ L+ EM    ++P+ V
Sbjct: 182 HFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSV 241

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           TMV V+SACAK +DL+ G                                C  +G ++  
Sbjct: 242 TMVGVISACAKLQDLQLGE-----------------------------QVCTCIGELE-- 270

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
                      +++N  +  +L+DMY KCG +DKA ++F     +++ +++T+++ +   
Sbjct: 271 -----------LEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQ 319

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           G  RE L +   M +   +P+ +T  + + ACS    V  G+
Sbjct: 320 GLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGK 361



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 193/415 (46%), Gaps = 24/415 (5%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           Q+H  +++ G   D +  + L      G    ++  R +FD++ + N+ +W +LI  Y+ 
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIH--FYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
                ++  +F ++V      PN  T   VI A A+L   ++G+ +   + +   E +  
Sbjct: 218 RGCYKEAVSLFFEMV-EVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNAL 276

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + N+L+  Y  CG +  A  +F     K++V +N+++S +V+ G   + + +  EM    
Sbjct: 277 MVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHG 336

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
            +PD +TM++ +SAC++  D+  G+W        H   L   +   +    ++++   + 
Sbjct: 337 PRPDRITMLSAVSACSELDDVSCGKWC-------HGYVLRNGLEGWDNVCNAIINMYMKC 389

Query: 296 GAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           G  ++  ++  +M  K  +  N     SLI  + + G+++ A ++F  +   D+  W+TM
Sbjct: 390 GKQEMACRVFDRMLNKTRVSWN-----SLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTM 444

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEP 411
           I         +EA++LF  MQ   +  + VT   V  AC + G +D  +    +  + + 
Sbjct: 445 IGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDI 504

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
            + +  G    T +VDM  R G    A++   KM +    S W A +GA  +  N
Sbjct: 505 HFDMHLG----TALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 46/249 (18%)

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD------KALEVFHTVKSRDV----FVWS 352
           Q+H+++ K G+  +    T+LI   T+ G  +      KALE+F  ++   +    +++S
Sbjct: 51  QLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELF--IEDNGIMGTHYMFS 108

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG--------RM 404
           ++I GF+  G G +A+ +F ++      P+  TF  VL AC+ S  + EG        +M
Sbjct: 109 SLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKM 168

Query: 405 FF-------NQMEPVYGVVP---------------GVKHYTCMVDMLGRAGLLDEAVEFI 442
            F       N +   YG                   V  +T ++    + G   EAV   
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 443 EKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV-LLSNIYAKT 498
            +M    I P +     ++ AC   ++++L E  C+ + ELE E +  +V  L ++Y K 
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKC 288

Query: 499 GKWDNVSEL 507
           G  D   ++
Sbjct: 289 GAIDKARKI 297


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/678 (35%), Positives = 377/678 (55%), Gaps = 74/678 (10%)

Query: 44   LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
            L+  C N       K IH  +LR+G+  + + A+ L   +  C      S+  A+ +F+ 
Sbjct: 492  LLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG-----SIMEAQNVFEG 546

Query: 98   IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
                ++ +WN++I  ++       ++ +FL++       P++ TF  V+          +
Sbjct: 547  TRARDIISWNSMIAGHAQHGSYEAAYKLFLEM-KKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 158  GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            G+ IH ++I+S  + D+ + N+LI+ Y  CG L  AY VF  +  ++V+SW +MI GF  
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFAD 665

Query: 218  GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-------------------- 257
             G   KA EL+ +M+ +  KP + T  ++L AC     L+                    
Sbjct: 666  QGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725

Query: 258  --------------------FGRWPNE--------------------ALSIFHELQLSKN 277
                                F + PN                     AL   +++Q  + 
Sbjct: 726  GNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQ-EQG 784

Query: 278  VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
            V  ++F+FVS+L+AC+   A++ G ++HA++ K+ ++ +  +  +LI MY KCG+L++A 
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844

Query: 338  EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            EVF     ++V  W+ MI  +A +G   +ALD F+ M +  +KP+  TFT++L AC+HSG
Sbjct: 845  EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 398  LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            LV EG   F+ +E  +G+ P ++HY C+V +LGRAG   EA   I +MP  P A+VW  L
Sbjct: 905  LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 458  LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
            LGAC+IH NV LAE+A ++ L+L   N    VLLSN+YA  G+WD+V+++R+ M   G++
Sbjct: 965  LGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIR 1024

Query: 518  KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            KEPG S IEV+  IH+F+A + SHP   EIY +L  +   ++  GY P+  ++L  +++E
Sbjct: 1025 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKE 1084

Query: 578  DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
              QE +L  HSERLAIAYGL+   P  PIRI KNLR+CGDCHT +K ISKL  REI+ RD
Sbjct: 1085 H-QETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 1143

Query: 638  RYRFHHFRGGNCSCMDYW 655
              RFH F+ G CSC D+W
Sbjct: 1144 SNRFHTFKNGKCSCEDFW 1161



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 199/409 (48%), Gaps = 51/409 (12%)

Query: 42  FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            S++  C   K L   + IH+ +   G   D    + L +  A      L  ARE+F+ +
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYA--RCGDLPRARELFNTM 446

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ +L +WN +I  Y+   +  ++  ++ Q+  +    P   TF  ++ A      +  G
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQM-QSEGVKPGRVTFLHLLSACTNSSAYSDG 505

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH  +++S  + +  ++N+L++ Y  CG +  A  VF     +D++SWNSMI+G  Q 
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G +E A +L+ EM+ E ++PD++T  +VL  C     LE GR                  
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR------------------ 607

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                                   QIH  + + G++L+  L  +LI+MY +CG+L  A E
Sbjct: 608 ------------------------QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYE 643

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VFH+++ R+V  W+ MI GFA  G  R+A +LF +MQ    KP   TF+++L AC  S  
Sbjct: 644 VFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSAC 703

Query: 399 VDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +DEG+      +   Y +  GV +   ++    ++G + +A +  +KMP
Sbjct: 704 LDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP 750



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 211/466 (45%), Gaps = 61/466 (13%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPV-----FSLIKQC---KNIKQLKQIHTQMLR 63
           +S  V+   +H       ++N +Q  P          L++ C   +++ + K+IH QM+ 
Sbjct: 51  VSVKVMRDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVE 110

Query: 64  TGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
            G+  D + ++    ++  C      S+  A ++F ++P+ ++ +WN+LI  Y+      
Sbjct: 111 AGVGPDIFLSNLLINMYVKC-----RSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKK 165

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++F +F ++   + + P++ T+  ++ A     +   G+ IH  +I++ ++ D  + NSL
Sbjct: 166 KAFQLFEEM-QTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSL 224

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           ++ Y  C DL  A  VF  I ++DVVS+N+M+  + Q  + E+ I L+ +M  E +    
Sbjct: 225 LNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIP--- 281

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                                                  PD+ T++++L A      +D 
Sbjct: 282 ---------------------------------------PDKVTYINLLDAFTTPSMLDE 302

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G +IH     +G+  +  + T+L  M+ +CG++  A +       RDV V++ +IA  A 
Sbjct: 303 GKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQ 362

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
           +G   EA + + +M+   V  N  T+ +VL ACS S  +  G +  + +  V G    V+
Sbjct: 363 HGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV-GHSSDVQ 421

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
               ++ M  R G L  A E    MP     S W A++      E+
Sbjct: 422 IGNSLISMYARCGDLPRARELFNTMPKRDLIS-WNAIIAGYARRED 466



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 211/477 (44%), Gaps = 88/477 (18%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K+IH++++  G   DP   + L      G    L  AR++F  I + ++ ++NT++  Y+
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLN--MYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYA 260

Query: 115 SSAEPIQSFMIFLQLVYNSPYFP----------NEFTFPFVIKAAARLVQF--------- 155
             A   +   +F Q+  +S   P          + FT P ++    R+ +          
Sbjct: 261 QKAYVEECIGLFGQM--SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 156 -RVGQAIHGMVIK-----------SSFED-DLFISNSLI--------------HFYAICG 188
            RVG A+  M ++            +F D D+ + N+LI               +Y +  
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS 378

Query: 189 D-LAMAYCVFVMI------------------------GKKDVVSWNSMISGFVQGGFFEK 223
           D + M    ++ +                           DV   NS+IS + + G   +
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR 438

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A EL+  M     K D ++  A+++  A++ D        EA+ ++ ++Q S+ V P   
Sbjct: 439 ARELFNTMP----KRDLISWNAIIAGYARRED------RGEAMKLYKQMQ-SEGVKPGRV 487

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           TF+ +LSAC    A   G  IH  + + GIK N +L  +L++MY +CG++ +A  VF   
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           ++RD+  W++MIAG A +G    A  LF  M++  ++P+ +TF +VL  C +   ++ GR
Sbjct: 548 RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
              + +    G+   V     +++M  R G L +A E    +      S W A++G 
Sbjct: 608 Q-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS-WTAMIGG 662



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 31  NNGHQHHPHPVFSLIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS 87
           N+G +       S++K C +   + + K++   +L +G   D    + L +  A     S
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALIS--AYSKSGS 738

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +  AR++FD++P  ++ +WN +I  Y+ +     +     Q+        N+F+F  ++ 
Sbjct: 739 MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVL-NKFSFVSILN 797

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A +       G+ +H  ++K   + D+ +  +LI  YA CG L  A  VF    +K+VV+
Sbjct: 798 ACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVT 857

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           WN+MI+ + Q G   KA++ +  M+ E +KPD  T  ++LSAC
Sbjct: 858 WNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC 900


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 354/619 (57%), Gaps = 54/619 (8%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           PVF  +     +K   Q+H  ML  GL                                 
Sbjct: 75  PVFQFLTGLNMLKLGHQVHAHMLLRGL--------------------------------- 101

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           QP     + ++  Y+SS +   S  +F  +        + FTFPFV+K++  L+   +G+
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVFNGI-------GDYFTFPFVLKSSVELLSVWMGK 154

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG++++   + DL+++ SLI  Y  CG++  A  VF  +  +DV SWN++++G+ + G
Sbjct: 155 CVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG 214

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-QLSKNV 278
             + A+ ++  M   N+     TM++  S     +         +ALS+F E+ +    V
Sbjct: 215 CIDAALAIFERMPWRNIV-SWTTMISGYSQSGLAQ---------QALSLFDEMVKEDSGV 264

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P+  T +SVL ACAQL  ++ G QIH    + G+  N  +  +L  MY KCG+L  A  
Sbjct: 265 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 324

Query: 339 VFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            F  +    +++  W+TMI  +A YG G +A+  F  M +A ++P+ +TFT +L  CSHS
Sbjct: 325 CFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 384

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLVD G  +FN M   Y + P V+HY C+ D+LGRAG L EA + + +MP+  G S+WG+
Sbjct: 385 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGS 444

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC+ H N+E+AE A   L  LEPEN G  VLLSN+YA+ G+W  V +LR  ++  G 
Sbjct: 445 LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGT 504

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PGCS IE+NG+ H FL G++SHP  KEIY  L+ +  ++K+ GY P+ S++L  + E
Sbjct: 505 KKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISE 564

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +E  L  HSE+LA+A+G+++      +R+ KNLR+CGDCHT    IS++Y RE+++R
Sbjct: 565 EE-KEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVR 623

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+GG CSC DYW
Sbjct: 624 DINRFHHFKGGCCSCGDYW 642


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/646 (39%), Positives = 363/646 (56%), Gaps = 62/646 (9%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFD 69
           +  V S P  P PTT        H+ +   SL++ C + K L   KQ+H Q    G+ ++
Sbjct: 34  TASVDSFP--PQPTT--------HYGYT--SLLQSCIDSKALNPGKQLHAQFYHLGIAYN 81

Query: 70  PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
              A+KL    A+   +SL  AR +FD+IP+ NL+ WN LIR Y+ +  P  + +I    
Sbjct: 82  QDLATKLVHLYAVS--NSLLNARNLFDKIPKQNLFLWNVLIRGYAWNG-PHDNAIILYHK 138

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + +    P+ FT PFV+KA + L     G++IH  VIKS +E DLF+  +LI  YA CG 
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  VF  I  +D V WNSM++ + Q G                              
Sbjct: 199 VMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH----------------------------- 229

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                       P+E++S+  E+  +  V P E T V+V+S+ A +  +  G +IH    
Sbjct: 230 ------------PDESISLCREMA-ANGVRPTEATLVTVISSSADVACLPYGREIHGFGW 276

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           + G + N  + T+LIDMY KCG++  AL +F  ++ + V  W+ +I G+AM+G    ALD
Sbjct: 277 RHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALD 336

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF +M++   +P+ +TF  VL ACS   L+DEGR  +N M   YG+ P V+HYTCM+D+L
Sbjct: 337 LFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLL 395

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G  G LDEA + I  M + P + VWGALL +CKIH NVELAE A   L+ELEP++ G  V
Sbjct: 396 GHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYV 455

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           +L+N+YA++GKW+ V +LR+ M    +KK   CS IEV  +++ FLAG+ SH     IY+
Sbjct: 456 ILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYA 515

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
           +L  +   +   GY P+   +   VEE++      + HSERLAIA+GLIS  P   + I 
Sbjct: 516 ELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCS-HSERLAIAFGLISTSPGTRLLIT 574

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLR+C DCH   K ISK+  REI +RD  R+H F+ G CSC D+W
Sbjct: 575 KNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 267 SIFHELQLSKNVNPDEF--------TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
           S +H L   +  + D F         + S+L +C    A++ G Q+HA+    GI  N  
Sbjct: 24  SFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQD 83

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L T L+ +Y    +L  A  +F  +  +++F+W+ +I G+A  G    A+ L+ +M +  
Sbjct: 84  LATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG 143

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH----YTCMVDMLGRAGL 434
           ++P+  T   VL ACS    + EGR         Y +  G +        ++DM  + G 
Sbjct: 144 LRPDNFTLPFVLKACSALSAIGEGRSIHE-----YVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGA 460
           + +A    +K+ +V  A +W ++L A
Sbjct: 199 VMDAGRVFDKI-VVRDAVLWNSMLAA 223


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/641 (38%), Positives = 359/641 (56%), Gaps = 61/641 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q   +H   +R  L  +  S SKL     L
Sbjct: 226 PNASTLVA----------LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 275

Query: 83  GTF--------SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
           GT          SL YAR +FD +P  N  TW+ LI  +   +   Q+F++F  ++    
Sbjct: 276 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            F +  +    ++A A L   R+G+ +H ++ KS    DL   NSL+  YA  G +  A 
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            +F  +  KD VS+++++SG+VQ G  E+A  ++++M+                AC    
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ----------------AC---- 435

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                 NV PD  T VS++ AC+ L A+  G   H  +  +G+ 
Sbjct: 436 ----------------------NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 473

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               +  +LIDMY KCG +D + +VF+ + SRD+  W+TMIAG+ ++G G+EA  LF  M
Sbjct: 474 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 533

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                 P+ VTF  +L ACSHSGLV EG+ +F+ M   YG+ P ++HY CMVD+L R G 
Sbjct: 534 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 593

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA EFI+ MP+     VW ALLGAC++++N++L +     + EL PE  G  VLLSNI
Sbjct: 594 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 653

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           Y+  G++D  +E+R   +V G KK PGCS IE+NG +H F+ G+ SHP   EIY +LD I
Sbjct: 654 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 713

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +  +K  GY P+ S +LQ +EEE  +E+AL  HSE+LAIAYG++S+   + I + KNLRV
Sbjct: 714 LVGIKKLGYQPDTSFVLQDLEEE-EKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 772

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCHTV K IS +  R I++RD  RFHHF+ G CSC D+W
Sbjct: 773 CGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 205/456 (44%), Gaps = 76/456 (16%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL-QLVYNSPYFPNEFTFPFVI 146
           L  A  +FDQIP P++ T+N LIRAYSSS+    +  + L + +      PN +TFPF +
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           KA + L     G+AIH   I +  + DLF+S +L+  Y  C  L  A  +F  +  +D+V
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 207 SWNSMISGFVQGGFFEKAIE--LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +WN+M++G+   G +  A+   L  +M+M  ++P+  T+VA+L   A++  L  G     
Sbjct: 193 AWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG----- 247

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
             +  H   +   ++P+                         +  K  +     L T+L+
Sbjct: 248 --TSVHAYCIRACLHPN-------------------------RNSKSKLTDGVLLGTALL 280

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNA 383
           DMY KCG+L  A  VF  + +R+   WS +I GF +     +A  LF  M  +     + 
Sbjct: 281 DMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSP 340

Query: 384 VTFTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            +  + L AC+    +D  RM    + +    GV   +     ++ M  +AGL+D+A+  
Sbjct: 341 TSIASALRACAS---LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 442 IEKMPIVPGASVWGALLG------------------ACKIHENVELAEY---ACSHLLEL 480
            ++M +    S    + G                  AC +  +         ACSHL  L
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 481 EPE--NHGALVL------------LSNIYAKTGKWD 502
           +    +HG++++            L ++YAK G+ D
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 362/606 (59%), Gaps = 41/606 (6%)

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A E+FD++   ++ +WN++I  Y S+    +   I+ Q++Y      +  T   V+  
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV-DLATIISVLVG 260

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A      +G+A+H + IKS+FE  +  SN+L+  Y+ CGDL  A  VF  +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE---- 264
            SMI+G+ + G  + AI L ++ME E VK D V   ++L ACA+   L+ G+  ++    
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380

Query: 265 -------------------------ALSIFHELQLSK---------NVNPDEFTFVSVLS 290
                                    A S+F  + +            + PD  T   +L 
Sbjct: 381 NNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILP 440

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA L A++ G +IH  + + G   + ++  +L+D+Y KCG L  A  +F  + S+D+  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MI+G+ M+G G EA+  F+ M++A ++P+ V+F ++L ACSHSGL+++G  FF  M+
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+L R G L +A EFIE +PI P A++WGALL  C+I+ ++ELA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + ELEPEN G  VLL+NIYA+  KW+ V  +R+ +   GL+K PGCS IE+ G+
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 531 IHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++ F++G  SSHP  K+I S L ++  ++K  GY P   + L +  +E  +E AL  HSE
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL-INADEMQKEMALCGHSE 739

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL+++ P + +R+ KNLRVCGDCH +AK +SK   REI+LRD  RFHHF+ G C
Sbjct: 740 KLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYC 799

Query: 650 SCMDYW 655
           SC  +W
Sbjct: 800 SCRGFW 805



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 175/374 (46%), Gaps = 28/374 (7%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T+  V++  A       G+ +H ++  ++   D  +   L+  YA CGDL     VF  +
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYR---EMEMENVKP-------DEVTMVAVLSAC 250
            KK+V  WN M+S + + G F+++I L++   E  +E  +P       D++    V+S  
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +              L I+ ++ +   ++ D  T +SVL  CA  G + +G  +H+   K
Sbjct: 221 SMISGYVSNGLTERGLEIYKQM-MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
              +     + +L+DMY+KCG+LD AL VF  +  R+V  W++MIAG+   G    A+ L
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-----MFFNQMEPVYGVVPGVKHYTCM 425
             +M++  VK + V  T++L AC+ SG +D G+     +  N ME    V         +
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVC------NAL 393

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY-ACSHLLELE--P 482
           +DM  + G +D A      M +V     W  ++G  K           AC+ L  LE   
Sbjct: 394 MDMYTKCGSMDGANSVFSTM-VVKDIISWNTMIGELKPDSRTMACILPACASLSALERGK 452

Query: 483 ENHGALVLLSNIYA 496
           E HG   +L N Y+
Sbjct: 453 EIHG--YILRNGYS 464



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 57/316 (18%)

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYS- 114
           QM + G+  D  + + +   CA     SL+  +++ D I     + NL+  N L+  Y+ 
Sbjct: 342 QMEKEGVKLDVVATTSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK 399

Query: 115 ----SSAEPIQSFMIFLQLV-YNS---PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
                 A  + S M+   ++ +N+      P+  T   ++ A A L     G+ IHG ++
Sbjct: 400 CGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYIL 459

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +  D  ++N+L+  Y  CG L +A  +F MI  KD+VSW  MISG+   G+  +AI 
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIA 519

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + EM    ++PDEV+ +++L AC+    LE G W       F+ ++   N+ P      
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-W-----RFFYIMKNDFNIEP------ 567

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-S 345
                                      KL  Y    ++D+ ++ GNL KA E   T+  +
Sbjct: 568 ---------------------------KLEHY--ACMVDLLSRTGNLSKAYEFIETLPIA 598

Query: 346 RDVFVWSTMIAGFAMY 361
            D  +W  ++ G  +Y
Sbjct: 599 PDATIWGALLCGCRIY 614


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/620 (39%), Positives = 357/620 (57%), Gaps = 52/620 (8%)

Query: 41   VFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMFD 96
            + S++  C ++  LK    IH   ++  +  D  + + L +  A  G F++   A   F+
Sbjct: 433  LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA---ALTTFN 489

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            ++   ++ TWN+LI  Y+   +P  +  +F +L   S   P+  T   V+ A A L    
Sbjct: 490  RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL-SAINPDAGTMVGVVPACALLNDLD 548

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGF 215
             G  IHG+++K  FE D  + N+LI  YA CG L  A  +F      KD V+WN +I+ +
Sbjct: 549  QGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 216  VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +Q G                                            EA+S FH+++L 
Sbjct: 609  MQNGH-----------------------------------------AKEAISSFHQMRL- 626

Query: 276  KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            +N +P+  TFVSVL A A L A   G+  HA + + G   N  +  SLIDMY KCG L  
Sbjct: 627  ENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXY 686

Query: 336  ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            + ++F+ +  +D   W+ M++G+A++G G  A+ LFS MQE++V+ ++V+F +VL AC H
Sbjct: 687  SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746

Query: 396  SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
             GLV+EGR  F+ M   Y + P ++HY CMVD+LGRAGL DE + FI+ MP+ P A VWG
Sbjct: 747  XGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWG 806

Query: 456  ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            ALLG+C++H NV+L E A  HL++LEP N    V+LS+IYA++G+W +  + R  M   G
Sbjct: 807  ALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866

Query: 516  LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
            LKK PGCS +E+  ++H F  G+ SHP  + ++   + ++ +++  GYVP+RS +LQ VE
Sbjct: 867  LKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVE 926

Query: 576  EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
            EED +E  L  HSERLAI + L++  P   I+IVKNLRVC DCHT  K ISK+  R I++
Sbjct: 927  EED-KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIV 985

Query: 636  RDRYRFHHFRGGNCSCMDYW 655
            RD  RFHHF  G CSC DYW
Sbjct: 986  RDATRFHHFEDGICSCNDYW 1005



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 223/483 (46%), Gaps = 73/483 (15%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           P+ ++ T  N + H+P     L+  CK++  L QIH Q++ +G F   +S + L    +L
Sbjct: 22  PSLSSSTYTN-YLHYPR----LLSSCKHLNPLLQIHAQIIVSG-FKHHHSITHLINLYSL 75

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
             F   + AR +FD  P P+   WN++IRAY+ S +  ++  ++  +V      P+++TF
Sbjct: 76  --FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV-EKGLEPDKYTF 132

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
            FV+KA    +  + G   HG + +   E D+FI   L+  Y+  GDL  A  VF  + K
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW- 261
           +DVV+WN+MI+G  Q     +A++ +R M++  V+P  V+++ +     K  ++E  R  
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSI 252

Query: 262 -------------PNEALSIFHELQ--------LSKNVNPDEFTFVSVLSACAQLGAMDI 300
                         N  + ++ +            + V+ D+ ++ ++++  A  G    
Sbjct: 253 HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVE 312

Query: 301 GVQIHAKMKKQGIKLN-------------------------CYL----------TTSLID 325
            +++  KMK   +++N                         C L           T L+ 
Sbjct: 313 VLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMV 372

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG  +KA ++F  ++ RD+  WS +IA     G   EAL LF  MQ  K+KPN VT
Sbjct: 373 MYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVT 432

Query: 386 FTNVLCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
             ++L AC+   L+  G+    F  + +    +  G    T +V M  + G    A+   
Sbjct: 433 LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG----TALVSMYAKCGFFTAALTTF 488

Query: 443 EKM 445
            +M
Sbjct: 489 NRM 491



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 218/486 (44%), Gaps = 71/486 (14%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS--KLFTPCALGTFSSLEYAREMFDQI 98
           +F  I +  NI+  + IH  + R   F    S     L++ C       ++ AR +FDQ+
Sbjct: 236 LFPGICKLSNIELCRSIHGYVFRRD-FSSAVSNGLIDLYSKCG-----DVDVARRVFDQM 289

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +  +W T++  Y+ +   ++   +F ++   +    N+ +      AAA  +    G
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI-NKVSAVSAFLAAAETIDLEKG 348

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IHG  ++   + D+ ++  L+  YA CG+   A  +F  +  +D+V+W+++I+  VQ 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------------------ 260
           G+ E+A+ L++EM+ + +KP+ VT++++L ACA    L+ G+                  
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 261 -----------WPNEALSIFHEL----------------QLSKNVNPDEFTFVSVLSA-- 291
                      +   AL+ F+ +                Q+    N  +  +   LSA  
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 292 ------------CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                       CA L  +D G  IH  + K G + +C++  +LIDMY KCG+L  A  +
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 340 FHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           F+    ++D   W+ +IA +   G  +EA+  F +M+     PN+VTF +VL A ++   
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             EG M F+      G +        ++DM  + G L  + +   +M      S W A+L
Sbjct: 649 FREG-MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS-WNAML 706

Query: 459 GACKIH 464
               +H
Sbjct: 707 SGYAVH 712



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 142/332 (42%), Gaps = 56/332 (16%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           +S  + N   +P ++ +   L        IH  +I S F+    I++ LI+ Y++     
Sbjct: 25  SSSTYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSITH-LINLYSLFHKCD 80

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +A  VF        + WNSMI  + +   + +A+E+Y  M                    
Sbjct: 81  LARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM-------------------- 120

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                                 + K + PD++TF  VL AC     +  GV  H ++ ++
Sbjct: 121 ----------------------VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRR 158

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
           G++ + ++   L+DMY+K G+L +A EVF  +  RDV  W+ MIAG +      EA+D F
Sbjct: 159 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFF 218

Query: 372 SRMQEAKVKPNAVTFTNV---LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
             MQ   V+P++V+  N+   +C  S+  L      +  + +    V  G      ++D+
Sbjct: 219 RSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG------LIDL 272

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             + G +D A    ++M      S WG ++  
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVS-WGTMMAG 303


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/624 (38%), Positives = 353/624 (56%), Gaps = 60/624 (9%)

Query: 45   IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQI 98
            IK C  +  L   +  H Q    G   D + +S L   ++ C       L+ AR +FD+I
Sbjct: 2022 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG-----QLKDARALFDEI 2076

Query: 99   PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF-------VIKAAAR 151
            P  N+ +W ++I  Y  + +   + ++F   +       +    P        V+ A +R
Sbjct: 2077 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 2136

Query: 152  LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            +    + + +HG V+K  F+  + + N+L+  YA CG   ++  VF  + +KD +SWNSM
Sbjct: 2137 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 2196

Query: 212  ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
            I+ + Q G                                            EAL +FH 
Sbjct: 2197 IAVYAQSGL-----------------------------------------SGEALEVFHG 2215

Query: 272  LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
            +     V  +  T  +VL ACA  GA+  G  IH ++ K  ++ N  + TS+IDMY KCG
Sbjct: 2216 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG 2275

Query: 332  NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
             ++ A + F  +K ++V  W+ M+AG+ M+G  +EALD+F +M  A VKPN +TF +VL 
Sbjct: 2276 RVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLA 2335

Query: 392  ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
            ACSH+GLV+EG  +FN M+  Y + PG++HY CMVD+ GRAG L+EA   I++M + P  
Sbjct: 2336 ACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDF 2395

Query: 452  SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
             VWG+LLGAC+IH+NV+L E A   L EL+P+N G  VLLSN+YA  G+W +V  +R  M
Sbjct: 2396 VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLM 2455

Query: 512  RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
            +   L K PG S +E+ G +H FL G+  HP  + IY  L+++   L+  GYVPN + +L
Sbjct: 2456 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 2515

Query: 572  QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
              V+EE+ +E  L +HSE+LA+A+G+++  P   I I+KNLRVCGDCHTV KLISKL +R
Sbjct: 2516 HDVDEEE-KEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHR 2574

Query: 632  EILLRDRYRFHHFRGGNCSCMDYW 655
            + ++RD  RFHHF+ G CSC DYW
Sbjct: 2575 DFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 233/395 (58%), Gaps = 14/395 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L++ CKN K L+QIH +++R+GL  D     KL       T   + YA  +F QI  P  
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIH--LYSTHGRIAYAILLFYQIQNPCT 90

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           +TWN +IRA + +    Q+ M++  +V       ++FTFPFVIKA    +   +G+ +HG
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            +IK  F  D+F+ N+LI FY  CG    A  VF  +  ++VVSW ++ISG +  G  ++
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A  ++ E+  +NV    V+  A+++   + +       P EAL +F  +Q ++N+ P+E+
Sbjct: 210 ARRIFDEIPSKNV----VSWTAMINGYIRNQQ------PEEALELFKRMQ-AENIFPNEY 258

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T VS++ AC ++G + +G  IH    K  I++  YL T+LIDMY+KCG++  A+EVF T+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             + +  W++MI    ++G G+EAL+LFS M+   VKP+A+TF  VLCAC H   V EG 
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
            +F +M   YG+ P  +HY CM ++  R+  LDEA
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 152/368 (41%), Gaps = 90/368 (24%)

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F+  + IH  +I+S   +D  ++  LIH Y+  G +A A  +F  I      +WN +I 
Sbjct: 39  NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
                G  E+A+ LY+ M                                          
Sbjct: 99  ANTINGLSEQALMLYKNM------------------------------------------ 116

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           + + +  D+FTF  V+ AC    ++D+G  +H  + K G   + ++  +LID Y KCG+ 
Sbjct: 117 VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCG----------------------------- 364
             AL+VF  ++ R+V  W+T+I+G  +  CG                             
Sbjct: 177 RFALKVFEKMRVRNVVSWTTVISG--LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR 234

Query: 365 ----REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP--- 417
                EAL+LF RMQ   + PN  T  +++ AC+  G++  GR   +     Y +     
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIE 289

Query: 418 -GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
            GV   T ++DM  + G + +A+E  E MP       W +++ +  +H    L + A + 
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVH---GLGQEALNL 345

Query: 477 LLELEPEN 484
             E+E  N
Sbjct: 346 FSEMERVN 353


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/668 (36%), Positives = 367/668 (54%), Gaps = 71/668 (10%)

Query: 51   IKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
            +K  K +H+ +L  G   D    +   K++  C      S +  R++F+++   +L  WN
Sbjct: 361  LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCG-----SYKDCRQVFEKLVNRDLIAWN 415

Query: 108  TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            T+I   +      ++  I+ Q+       PN+ T+  ++ A         G+ IH  V+K
Sbjct: 416  TMIGGLAEGGNWEEASEIYHQM-QREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 168  SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
              F  D+ + N+LI  YA CG +  A  +F  + +KD++SW +MI G  + G   +A+ +
Sbjct: 475  DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 228  YREMEMENVKPDEVT--------------------------------------MVAVLSA 249
            +++M+   +KP+ VT                                      +V + S 
Sbjct: 535  FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSM 594

Query: 250  CAKKRDLE--FGRWPN--------------------EALSIFHELQLSKNVNPDEFTFVS 287
            C   +D    F R                       EAL +F  LQ  + + PD+ T+++
Sbjct: 595  CGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ-EEGLKPDKVTYIN 653

Query: 288  VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
            +L+ACA  G+++   +IH+ + K G   +  L  +L+  Y KCG+   AL VF  +  R+
Sbjct: 654  MLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRN 713

Query: 348  VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
            V  W+ +I G A +G G++ L LF RM+   +KP+ VTF ++L ACSH+GL++EGR +F 
Sbjct: 714  VISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFC 773

Query: 408  QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
             M   +G+ P ++HY CMVD+LGRAG LDE    I+ MP      +WGALLGAC+IH NV
Sbjct: 774  SMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNV 833

Query: 468  ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
             +AE A    L+L+P+N    V LS++YA  G WD+ ++LRK M   G+ KEPG S IEV
Sbjct: 834  PVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEV 893

Query: 528  NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
              ++H F+A + SHP  ++IY++LD++   +K  GYVP+   ++  V+E + +E A+  H
Sbjct: 894  GDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGE-KENAVCHH 952

Query: 588  SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
            SERLAIAYGLIS  P  PIRI KNLRVC DCHT  K I+K+ +REI+ RD  RFHHF+ G
Sbjct: 953  SERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDG 1012

Query: 648  NCSCMDYW 655
             CSC DYW
Sbjct: 1013 VCSCGDYW 1020



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 228/486 (46%), Gaps = 73/486 (15%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           L+  CK+   L   ++IH + ++  L FD   A+    ++  C      S+  ARE+FD+
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCG-----SIHEAREVFDK 304

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   ++ +W  +I  Y+       +F IF Q +      PN  T+  V+ A +     + 
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIF-QKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +H  ++ +  E DL +  +L+  YA CG       VF  +  +D+++WN+MI G  +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW---------------- 261
           GG +E+A E+Y +M+ E + P+++T V +L+AC     L +GR                 
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 262 PNEALSIF--------HELQLSKNVNPDEFTFVSVLSACAQLG----------------- 296
            N  +S++          L  +K V  D  ++ +++   A+ G                 
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 297 ------------------AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                             A+D G +IH ++ + G+  + ++  +L++MY+ CG++  A +
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RD+  ++ MI G+A +  G+EAL LF R+QE  +KP+ VT+ N+L AC++SG 
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           ++  +   + +    G +        +V    + G   +A+   +KM +      W A++
Sbjct: 664 LEWAKE-IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAII 721

Query: 459 GACKIH 464
           G C  H
Sbjct: 722 GGCAQH 727



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 136/615 (22%), Positives = 246/615 (40%), Gaps = 129/615 (20%)

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           M  +Q +       N   +  ++K    +     G+ +H  +I+     D +  N+LI+ 
Sbjct: 126 MDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINM 185

Query: 184 YAICGDLAMAYCVFVMIG--KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
           Y  CG +  A  V+  +   ++ V SWN+M+ G+VQ G+ E+A++L REM+   +     
Sbjct: 186 YIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRA 245

Query: 242 TMVAVLSACAKKRDLEFGR-----------------------------WPNEALSIFHEL 272
           T + +LS+C     LE GR                               +EA  +F ++
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI---------KLNCY----- 318
           + +K+V     ++  ++   A  G  +I  +I  KM+++G+          LN +     
Sbjct: 306 E-TKSV----VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAA 360

Query: 319 ---------------------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
                                + T+L+ MY KCG+     +VF  + +RD+  W+TMI G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS-----------HSGLVDEGRMFF 406
            A  G   EA +++ +MQ   + PN +T+  +L AC            HS +V +G MF 
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD 480

Query: 407 ----NQMEPVYGVVPGVKH---------------YTCMVDMLGRAGLLDEAVEFIEKMP- 446
               N +  +Y     +K                +T M+  L ++GL  EA+   + M  
Sbjct: 481 ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 447 --IVPGASVWGALLGACKIHENVELAEYACSHLLE--LEPENHGALVLLSNIYAKTGKWD 502
             + P    + ++L AC     ++        ++E  L  + H A  L+ N+Y+  G   
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLV-NMYSMCGSVK 599

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           +  ++   M    +        +  N      + G ++H L KE     D    RL+  G
Sbjct: 600 DARQVFDRMTQRDI--------VAYNA----MIGGYAAHNLGKEALKLFD----RLQEEG 643

Query: 563 YVPNRS---HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             P++    ++L         E A  +HS  L +  G +S + S    +V     CG   
Sbjct: 644 LKPDKVTYINMLNACANSGSLEWAKEIHS--LVLKDGYLS-DTSLGNALVSTYAKCGSFS 700

Query: 620 TVAKLISKLYNREIL 634
               +  K+  R ++
Sbjct: 701 DALLVFDKMMKRNVI 715


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/666 (36%), Positives = 366/666 (54%), Gaps = 63/666 (9%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           +NI   +Q+H  ++R G   D ++A+ L           ++ A  +F+++P  ++ +WN 
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYV--KMGRVDIASVIFEKMPDSDVVSWNA 273

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           LI     +    ++  + LQ+  +S   PN F    ++KA A    F +G+ IHG +IK+
Sbjct: 274 LISGCVLNGHDHRAIELLLQM-KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 332

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           + + D +I   L+  YA    L  A  VF  +  +D++ WN++ISG   GG  ++A  ++
Sbjct: 333 NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIF 392

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------------------WP- 262
             +  E +  +  T+ AVL + A        R                         W  
Sbjct: 393 YGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKC 452

Query: 263 ---NEALSIFHELQ------------------------------LSKNVNPDEFTFVSVL 289
              ++A+ +F E                                L K + PD F   S+L
Sbjct: 453 SCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLL 512

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
           +ACA L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   F ++  R V 
Sbjct: 513 NACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVV 572

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            WS MI G A +G G+ AL+LF RM +  + PN +T T+VLCAC+H+GLVDE + +FN M
Sbjct: 573 SWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM 632

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
           + ++G+    +HY+CM+D+LGRAG LD+A+E +  MP    ASVWGALLGA ++H++ EL
Sbjct: 633 KEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPEL 692

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            + A   L  LEPE  G  VLL+N YA +G W+ V+++RK M+ S +KKEP  S +EV  
Sbjct: 693 GKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKD 752

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++H F+ G+ SHP+ KEIYSKLDE+   +   GY+PN    L  ++  + +E  L+ HSE
Sbjct: 753 KVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSE-KELLLSHHSE 811

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           RLA+A+ L+S  P  PIR+ KNLR+C DCH   K IS + +REI++RD  RFHHFR G C
Sbjct: 812 RLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTC 871

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 872 SCGDYW 877



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 184/415 (44%), Gaps = 69/415 (16%)

Query: 56  QIHTQMLRTGLFFDPYSA-----SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
            +H  +L++G      +      SK   PC          AR +FD+IP P   +W++L+
Sbjct: 25  HLHANLLKSGFLASLRNHLISFYSKCRRPCC---------ARRVFDEIPDPCHVSWSSLV 75

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            AYS++  P  +   F  +        NEF  P V+K    +   ++G  +H M + + F
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGF 131

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYR 229
             D+F++N+L+  Y   G +  A  VF   G +++ VSWN ++S +V+      AI+++ 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
           EM    ++P E     V++AC   R+++ GR                             
Sbjct: 192 EMVWSGIQPTEFGFSCVVNACTGSRNIDAGR----------------------------- 222

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
                        Q+HA + + G + + +   +L+DMY K G +D A  +F  +   DV 
Sbjct: 223 -------------QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 269

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM---FF 406
            W+ +I+G  + G    A++L  +M+ + + PN    +++L AC+ +G  D GR    F 
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 329

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
            +         GV     +VDM  +   LD+A++  + M       +W AL+  C
Sbjct: 330 IKANADSDDYIGVG----LVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGC 379


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/624 (38%), Positives = 353/624 (56%), Gaps = 60/624 (9%)

Query: 45   IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQI 98
            IK C  +  L   +  H Q    G   D + +S L   ++ C       L+ AR +FD+I
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG-----QLKDARALFDEI 1203

Query: 99   PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF-------VIKAAAR 151
            P  N+ +W ++I  Y  + +   + ++F   +       +    P        V+ A +R
Sbjct: 1204 PLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 1263

Query: 152  LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            +    + + +HG V+K  F+  + + N+L+  YA CG   ++  VF  + +KD +SWNSM
Sbjct: 1264 VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 1323

Query: 212  ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
            I+ + Q G                                            EAL +FH 
Sbjct: 1324 IAVYAQSGL-----------------------------------------SGEALEVFHG 1342

Query: 272  LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
            +     V  +  T  +VL ACA  GA+  G  IH ++ K  ++ N  + TS+IDMY KCG
Sbjct: 1343 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG 1402

Query: 332  NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
             ++ A + F  +K ++V  W+ M+AG+ M+G  +EALD+F +M  A VKPN +TF +VL 
Sbjct: 1403 RVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLA 1462

Query: 392  ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
            ACSH+GLV+EG  +FN M+  Y + PG++HY CMVD+ GRAG L+EA   I++M + P  
Sbjct: 1463 ACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDF 1522

Query: 452  SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
             VWG+LLGAC+IH+NV+L E A   L EL+P+N G  VLLSN+YA  G+W +V  +R  M
Sbjct: 1523 VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLM 1582

Query: 512  RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
            +   L K PG S +E+ G +H FL G+  HP  + IY  L+++   L+  GYVPN + +L
Sbjct: 1583 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 1642

Query: 572  QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
              V+EE+ +E  L +HSE+LA+A+G+++  P   I I+KNLRVCGDCHTV KLISKL +R
Sbjct: 1643 HDVDEEE-KEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHR 1701

Query: 632  EILLRDRYRFHHFRGGNCSCMDYW 655
            + ++RD  RFHHF+ G CSC DYW
Sbjct: 1702 DFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 233/395 (58%), Gaps = 14/395 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L++ CKN K L+QIH +++R+GL  D     KL       T   + YA  +F QI  P  
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIH--LYSTHGRIAYAILLFYQIQNPCT 90

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           +TWN +IRA + +    Q+ M++  +V       ++FTFPFVIKA    +   +G+ +HG
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            +IK  F  D+F+ N+LI FY  CG    A  VF  +  ++VVSW ++ISG +  G  ++
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A  ++ E+  +NV    V+  A+++   + +       P EAL +F  +Q ++N+ P+E+
Sbjct: 210 ARRIFDEIPSKNV----VSWTAMINGYIRNQQ------PEEALELFKRMQ-AENIFPNEY 258

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T VS++ AC ++G + +G  IH    K  I++  YL T+LIDMY+KCG++  A+EVF T+
Sbjct: 259 TMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             + +  W++MI    ++G G+EAL+LFS M+   VKP+A+TF  VLCAC H   V EG 
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
            +F +M   YG+ P  +HY CM ++  R+  LDEA
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 152/368 (41%), Gaps = 90/368 (24%)

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F+  + IH  +I+S   +D  ++  LIH Y+  G +A A  +F  I      +WN +I 
Sbjct: 39  NFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIR 98

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
                G  E+A+ LY+ M                                          
Sbjct: 99  ANTINGLSEQALMLYKNM------------------------------------------ 116

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           + + +  D+FTF  V+ AC    ++D+G  +H  + K G   + ++  +LID Y KCG+ 
Sbjct: 117 VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCG----------------------------- 364
             AL+VF  ++ R+V  W+T+I+G  +  CG                             
Sbjct: 177 RFALKVFEKMRVRNVVSWTTVISG--LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR 234

Query: 365 ----REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP--- 417
                EAL+LF RMQ   + PN  T  +++ AC+  G++  GR   +     Y +     
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIE 289

Query: 418 -GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
            GV   T ++DM  + G + +A+E  E MP       W +++ +  +H    L + A + 
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVH---GLGQEALNL 345

Query: 477 LLELEPEN 484
             E+E  N
Sbjct: 346 FSEMERVN 353


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/641 (38%), Positives = 359/641 (56%), Gaps = 61/641 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q   +H   +R  L  +  S SKL     L
Sbjct: 111 PNASTLVA----------LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 160

Query: 83  GTF--------SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
           GT          SL YAR +FD +P  N  TW+ LI  +   +   Q+F++F  ++    
Sbjct: 161 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 220

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            F +  +    ++A A L   R+G+ +H ++ KS    DL   NSL+  YA  G +  A 
Sbjct: 221 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            +F  +  KD VS+++++SG+VQ G  E+A  ++++M+                AC    
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ----------------AC---- 320

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                 NV PD  T VS++ AC+ L A+  G   H  +  +G+ 
Sbjct: 321 ----------------------NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 358

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               +  +LIDMY KCG +D + +VF+ + SRD+  W+TMIAG+ ++G G+EA  LF  M
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 418

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                 P+ VTF  +L ACSHSGLV EG+ +F+ M   YG+ P ++HY CMVD+L R G 
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 478

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA EFI+ MP+     VW ALLGAC++++N++L +     + EL PE  G  VLLSNI
Sbjct: 479 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 538

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           Y+  G++D  +E+R   +V G KK PGCS IE+NG +H F+ G+ SHP   EIY +LD I
Sbjct: 539 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 598

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +  +K  GY P+ S +LQ +EEE  +E+AL  HSE+LAIAYG++S+   + I + KNLRV
Sbjct: 599 LVGIKKLGYQPDTSFVLQDLEEE-EKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 657

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCHTV K IS +  R I++RD  RFHHF+ G CSC D+W
Sbjct: 658 CGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 177/406 (43%), Gaps = 75/406 (18%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           PN +TFPF +KA + L     G+AIH   I +  + DLF+S +L+  Y  C  L  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIE--LYREMEMENVKPDEVTMVAVLSACAKKR 254
           F  +  +D+V+WN+M++G+   G +  A+   L  +M+M  ++P+  T+VA+L   A++ 
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
            L  G       +  H   +   ++P+                         +  K  + 
Sbjct: 128 ALAQG-------TSVHAYCIRACLHPN-------------------------RNSKSKLT 155

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               L T+L+DMY KCG+L  A  VF  + +R+   WS +I GF +     +A  LF  M
Sbjct: 156 DGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215

Query: 375 -QEAKVKPNAVTFTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGR 431
             +     +  +  + L AC+    +D  RM    + +    GV   +     ++ M  +
Sbjct: 216 LAQGLCFLSPTSIASALRACAS---LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLG------------------ACKIHENVELAEY- 472
           AGL+D+A+   ++M +    S    + G                  AC +  +       
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 473 --ACSHLLELEPE--NHGALVL------------LSNIYAKTGKWD 502
             ACSHL  L+    +HG++++            L ++YAK G+ D
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 378



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L   V P+ +TF   L AC+ L     G  IH      G++ + +++T+L+DMY KC  L
Sbjct: 2   LRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL 61

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD--LFSRMQEAKVKPNAVTFTNVLC 391
             A  +F T+ +RD+  W+ M+AG+A +G    A+   L  +MQ  +++PNA T   +L 
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 121

Query: 392 ACSHSGLVDEGR---------MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
             +  G + +G                     +  GV   T ++DM  + G L  A    
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 181

Query: 443 EKMPIVPGASVWGALLGA 460
           + MP       W AL+G 
Sbjct: 182 DAMP-ARNEVTWSALIGG 198


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/613 (37%), Positives = 358/613 (58%), Gaps = 45/613 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAREMFDQIPQPN 102
           LI +C ++++L QI    +++ +  D    +KL   C    T SS+ YAR +F+ + +P+
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPD 93

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +  +N++ R YS    P++ F +F++++ +    P+ +TFP ++KA A       G+ +H
Sbjct: 94  IVIFNSMARGYSRFTNPLEVFSLFVEILEDG-ILPDNYTFPSLLKACAVAKALEEGRQLH 152

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            + +K   +D++++  +LI+ Y  C D+  A  VF  I +  VV +N+MI+G+ +     
Sbjct: 153 CLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYAR----- 207

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                                        + R       PNEALS+F E+Q  K + P+E
Sbjct: 208 -----------------------------RNR-------PNEALSLFREMQ-GKYLKPNE 230

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T +SVLS+CA LG++D+G  IH   KK        + T+LIDM+ KCG+LD A+ +F  
Sbjct: 231 ITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEK 290

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ +D   WS MI  +A +G   +++ +F RM+   V+P+ +TF  +L ACSH+G V+EG
Sbjct: 291 MRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEG 350

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           R +F+QM   +G+VP +KHY  MVD+L  AG L++A EFI+K+PI P   +W  LL AC 
Sbjct: 351 RKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACS 410

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H N++LAE     + EL+  + G  V+LSN+YA+  KW+ V  LRK M+     K PGC
Sbjct: 411 SHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGC 470

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           SSIEVN  +H+F +G+       +++  LDE+V  LK  GYVP+ S ++     +  +E 
Sbjct: 471 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEI 530

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSE+LAI +GL++  P   IR+VKNLRVC DCH  AKLIS ++ R+++ RD  RFH
Sbjct: 531 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFH 590

Query: 643 HFRGGNCSCMDYW 655
           HF  G CSC D+W
Sbjct: 591 HFEDGKCSCGDFW 603


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/600 (39%), Positives = 349/600 (58%), Gaps = 46/600 (7%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           +H  +++ GL  D + ++ L        F  L+ A+ +FD +   +L +WN++I AY  +
Sbjct: 270 VHLYVIKHGLESDVFVSNALIN--MYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQN 327

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF-EDDLF 175
            +P+ +   F ++++     P+  T   +     +L   R+G+A+HG V++  + E D+ 
Sbjct: 328 DDPVTALGFFKEMLFVGMR-PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIV 386

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           I N+L++ YA  G +  A  VF  +  +DV+SWN++I+G+ Q G   +AI+ Y  M    
Sbjct: 387 IGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMM---- 442

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                                E GR                 + P++ T+VS+L A + +
Sbjct: 443 ---------------------EEGR----------------TIVPNQGTWVSILPAYSHV 465

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
           GA+  G++IH ++ K  + L+ ++ T LIDMY KCG L+ A+ +F+ +       W+ +I
Sbjct: 466 GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           +   ++G G +AL LF  M+   VK + +TF ++L ACSHSGLVDE +  F+ M+  Y +
Sbjct: 526 SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRI 585

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
            P +KHY CMVD+ GRAG L++A   +  MPI   AS+WG LL AC+IH N EL  +A  
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASD 645

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
            LLE++ EN G  VLLSNIYA  GKW+   ++R   R  GL+K PG SS+ V   +  F 
Sbjct: 646 RLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFY 705

Query: 536 AGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
           AG  SHP C EIY +L  + A++KS GYVP+ S +LQ V EED +E+ L  HSERLAI +
Sbjct: 706 AGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDV-EEDEKEEILTSHSERLAIVF 764

Query: 596 GLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           G+IS  P  PIRI KNLRVCGDCH   K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 765 GIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 238/495 (48%), Gaps = 77/495 (15%)

Query: 42  FSLI-KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           F+L+ + C NI   KQ+H  +L  G   D    ++L T  A  T   L  +   F  I +
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYA--TLGDLSLSSTTFKHIQR 111

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N+++WN+++ AY        S     +L+  S   P+ +TFP V+KA   L     G+ 
Sbjct: 112 KNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEK 168

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  V+K  FE D++++ SLIH Y+  G + +A+ VFV +  +DV SWN+MISGF Q G 
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL------------------------ 256
             +A+ +   M+ E VK D VT+ ++L  CA+  D+                        
Sbjct: 229 VAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNA 288

Query: 257 ------EFGR------------------W------------PNEALSIFHELQLSKNVNP 280
                 +FGR                  W            P  AL  F E+ L   + P
Sbjct: 289 LINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM-LFVGMRP 347

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           D  T VS+ S   QL    IG  +H  + + + ++++  +  +L++MY K G++D A  V
Sbjct: 348 DLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAV 407

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGL 398
           F  + SRDV  W+T+I G+A  G   EA+D ++ M+E + + PN  T+ ++L A SH G 
Sbjct: 408 FEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWG 455
           + +G     ++     +   V   TC++DM G+ G L++A+    ++P    VP    W 
Sbjct: 468 LQQGMKIHGRLIK-NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP----WN 522

Query: 456 ALLGACKIHENVELA 470
           A++ +  IH + E A
Sbjct: 523 AIISSLGIHGHGEKA 537


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/669 (36%), Positives = 370/669 (55%), Gaps = 73/669 (10%)

Query: 50  NIKQLKQIHTQMLRTGL---FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           ++K+ ++IH  ++  G     F   +   L+  C       ++ A +MF+++   +L +W
Sbjct: 160 DLKKGREIHGLIITNGFESNLFVMTAVMSLYAKC-----RQIDNAYKMFERMQHKDLVSW 214

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
            TL+  Y+ +    ++  + LQ+   +   P+  T   ++ A A +   R+G++IHG   
Sbjct: 215 TTLVAGYAQNGHAKRALQLVLQM-QEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAF 273

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +S FE  + ++N+L+  Y  CG   +A  VF  +  K VVSWN+MI G  Q G  E+A  
Sbjct: 274 RSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFA 333

Query: 227 LYREMEMENVKPDEV--------------------------------------TMVAVLS 248
            + +M  E   P  V                                      +++++ S
Sbjct: 334 TFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYS 393

Query: 249 ACAKKRDLEFGRWPN----------------------EALSIFHELQLSKNVNPDEFTFV 286
            C K+ D+    + N                      EAL++F  +Q S+ +  D FT V
Sbjct: 394 KC-KRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQ-SQGIKLDCFTLV 451

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
            V++A A          IH    +  +  N +++T+L+DMY KCG +  A ++F  ++ R
Sbjct: 452 GVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQER 511

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
            V  W+ MI G+  +G G+E LDLF+ MQ+  VKPN +TF +V+ ACSHSG V+EG + F
Sbjct: 512 HVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLF 571

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M+  Y + P + HY+ MVD+LGRAG LD+A  FI++MPI PG SV GA+LGACKIH+N
Sbjct: 572 KSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKN 631

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           VEL E A   L +L+P+  G  VLL+NIYA    WD V+++R  M   GL K PGCS +E
Sbjct: 632 VELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVE 691

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           +  EIH F +G ++HP  K+IY+ L+ +   +K+ GYVP+   +  +  EEDV++Q L+ 
Sbjct: 692 LRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDV--EEDVKKQLLSS 749

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSERLAIA+GL++  P   + I KNLRVCGDCH   K IS +  REI++RD  RFHHF+ 
Sbjct: 750 HSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKN 809

Query: 647 GNCSCMDYW 655
           G+CSC DYW
Sbjct: 810 GSCSCGDYW 818



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 195/429 (45%), Gaps = 51/429 (11%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMF 95
           H HP   L++ C + K+L QI   +++ G + +    +K+ +  C  G+ S  E AR +F
Sbjct: 46  HRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNS--EAAR-VF 102

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           + +       ++ +++ Y+ ++    +   FL+++ +         +  +++     +  
Sbjct: 103 EHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVG-DYACLLQLCGENLDL 161

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           + G+ IHG++I + FE +LF+  +++  YA C  +  AY +F  +  KD+VSW ++++G+
Sbjct: 162 KKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGY 221

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G  ++A++L  +M+    KPD VT+V++L A A  + L  GR               
Sbjct: 222 AQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGR--------------- 266

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                                       IH    + G +    +T +L+DMY KCG+   
Sbjct: 267 ---------------------------SIHGYAFRSGFESLVNVTNALLDMYFKCGSARI 299

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF  ++S+ V  W+TMI G A  G   EA   F +M +    P  VT   VL AC++
Sbjct: 300 ARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACAN 359

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF---IEKMPIVPGAS 452
            G ++ G  F +++     +   V     ++ M  +   +D A      +EK  +   A 
Sbjct: 360 LGDLERG-WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAM 418

Query: 453 VWGALLGAC 461
           + G     C
Sbjct: 419 ILGYAQNGC 427


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/643 (38%), Positives = 369/643 (57%), Gaps = 60/643 (9%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK 75
           +P+H   +  +  + H ++     SL++ C + K L   KQ+H ++ + G+ ++   A+K
Sbjct: 43  IPQHKVDSFPSSPSNHYYYA----SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATK 98

Query: 76  L---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
           L   ++ C     +SL  A  +FD+IP+ NL+ WN LIRAY+ +     +  ++ Q++  
Sbjct: 99  LVNFYSVC-----NSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQML-E 152

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
               P+ FT PFV+KA + L     G+ IH  VI+S +E D+F+  +L+  YA CG +  
Sbjct: 153 YGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVD 212

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  VF  I  +D V WNSM++ + Q G                                 
Sbjct: 213 ARHVFDKIVDRDAVLWNSMLAAYAQNGH-------------------------------- 240

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
                    P+E+LS+  E+  +K V P E T V+V+S+ A +  +  G +IH    + G
Sbjct: 241 ---------PDESLSLCCEMA-AKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHG 290

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
            + N  + T+LIDMY KCG++  A  +F  ++ + V  W+ +I G+AM+G   EALDLF 
Sbjct: 291 FQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFE 350

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           RM + + +P+ +TF   L ACS   L+DEGR  +N M     + P V+HYTCMVD+LG  
Sbjct: 351 RMMK-EAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHC 409

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
           G LDEA + I +M ++P + VWGALL +CK H NVELAE A   L+ELEP++ G  V+L+
Sbjct: 410 GQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILA 469

Query: 493 NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
           N+YA++GKW+ V+ LR+ M   G+KK   CS IEV  +++ FL+G+ SHP    IY++L 
Sbjct: 470 NMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELK 529

Query: 553 EIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNL 612
            +   ++  GYVP+   +   VEE++  +   + HSERLAIA+GLIS  P   + I KNL
Sbjct: 530 RLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCS-HSERLAIAFGLISTLPGTRLLITKNL 588

Query: 613 RVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           R+C DCH   K ISK+  REI +RD  R+HHFR G CSC DYW
Sbjct: 589 RICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/604 (38%), Positives = 351/604 (58%), Gaps = 52/604 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           K +H Q +  GL  D   A+   +++T C      S+E AR +FD +   ++ +W  +I 
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCG-----SIEGARRVFDNMKVRDVVSWTVMIE 333

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+ +     +F +F  +       P+  T+  ++ A A        + IH  V  + F 
Sbjct: 334 GYAENGNIEDAFGLFATM-QEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            DL +S +L+H YA CG +  A  VF  + ++DVVSW++MI  +V+ G+           
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGY----------- 441

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                                           EA   FH ++ S N+ PD  T++++L+A
Sbjct: 442 ------------------------------GTEAFETFHLMKRS-NIEPDGVTYINLLNA 470

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           C  LGA+D+G++I+ +  K  +  +  L  +LI M  K G++++A  +F T+  RDV  W
Sbjct: 471 CGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITW 530

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI G++++G  REAL LF RM + + +PN+VTF  VL ACS +G VDEGR FF  +  
Sbjct: 531 NAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLE 590

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
             G+VP VK Y CMVD+LGRAG LDEA   I+ MP+ P +S+W +LL AC+IH N+++AE
Sbjct: 591 GRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAE 650

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A    L ++P +    V LS++YA  G W+NV+++RK M   G++KE GC+ IEV G++
Sbjct: 651 RAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKV 710

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           H F+  + SHPL  EIY++L  ++  +K  GY+P   ++L  V E+  +E+A++ HSE+L
Sbjct: 711 HTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQ-KEEAISYHSEKL 769

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           AIAYG++S+    PIRI KNLRVC DCH+ +K ISK+  REI+ RD  RFHHF+ G CSC
Sbjct: 770 AIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSC 829

Query: 652 MDYW 655
            DYW
Sbjct: 830 GDYW 833



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 224/497 (45%), Gaps = 72/497 (14%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTF 85
            G+         L ++C  ++     KQ+   +++ G   + Y  +   KL++ C     
Sbjct: 51  GGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG---- 106

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            ++  AR++FD +    + TWN LI  Y+      ++F +F Q+V +    P+  TF  V
Sbjct: 107 -NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV-DEGLEPSIITFLSV 164

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A +       G+ +H  V+ + F  D  I  +L+  Y   G +  A  VF  +  +DV
Sbjct: 165 LDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDV 224

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
            ++N M+ G+ + G +EKA EL                                      
Sbjct: 225 STFNVMVGGYAKSGDWEKAFEL-------------------------------------- 246

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
              F+ +Q    + P++ +F+S+L  C    A+  G  +HA+    G+  +  + TSLI 
Sbjct: 247 ---FYRMQ-QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MYT CG+++ A  VF  +K RDV  W+ MI G+A  G   +A  LF+ MQE  ++P+ +T
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRIT 362

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           + +++ AC+ S  ++  R   +Q++ + G    +   T +V M  + G + +A +  + M
Sbjct: 363 YMHIMNACAISANLNHAREIHSQVD-IAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM 421

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLE---LEPE------------NHGALVL 490
           P     S W A++GA  +        +   HL++   +EP+            + GAL +
Sbjct: 422 PRRDVVS-WSAMIGA-YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDV 479

Query: 491 LSNIYAKTGKWDNVSEL 507
              IY +  K D VS +
Sbjct: 480 GMEIYTQAIKADLVSHV 496



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 18/290 (6%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           N+   ++IH+Q+   G   D   ++ L   +  C      +++ AR++FD +P+ ++ +W
Sbjct: 375 NLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCG-----AIKDARQVFDAMPRRDVVSW 429

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           + +I AY  +    ++F  F  L+  S   P+  T+  ++ A   L    VG  I+   I
Sbjct: 430 SAMIGAYVENGYGTEAFETF-HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI 488

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K+     + + N+LI   A  G +  A  +F  + ++DV++WN+MI G+   G   +A+ 
Sbjct: 489 KADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALY 548

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+  M  E  +P+ VT V VLSAC++   ++ GR        F  L   + + P    + 
Sbjct: 549 LFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGR------RFFTYLLEGRGIVPTVKLYG 602

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            ++    + G +D   +    +K   +K    + +SL+      GNLD A
Sbjct: 603 CMVDLLGRAGELD---EAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVA 649


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/567 (42%), Positives = 342/567 (60%), Gaps = 24/567 (4%)

Query: 97  QIPQPNL--YTWNTLIRAYSSSAEPIQSF----MIFLQLVYNSPYFPNEFTFPFVIKAAA 150
            +  PN+  + WN LIRA + S     +F     ++L++  ++   P+  TFPF++++  
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHA-VLPDLHTFPFLLQS-- 72

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +     G+ +H  ++     +D F+  SLI+ Y+ CG    A   F  I + D+ SWN+
Sbjct: 73  -INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNA 131

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I    + G    A +L+ +M  +NV      M+    +C + +          ALS+F 
Sbjct: 132 IIHANAKAGMIHIARKLFDQMPEKNVI-SWSCMIHGYVSCGEYK---------AALSLFR 181

Query: 271 ELQL--SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
            LQ      + P+EFT  SVLSACA+LGA+  G  +HA + K G+K++  L TSLIDMY 
Sbjct: 182 SLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYA 241

Query: 329 KCGNLDKALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           KCG++++A  +F  +   +DV  WS MI  F+M+G   E L+LF+RM    V+PNAVTF 
Sbjct: 242 KCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFV 301

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VLCAC H GLV EG  +F +M   YGV P ++HY CMVD+  RAG +++A   ++ MP+
Sbjct: 302 AVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPM 361

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +WGALL   +IH +VE  E A + LLEL+P N  A VLLSN+YAK G+W  V  L
Sbjct: 362 EPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHL 421

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M V G+KK PGCS +EV+G I +F AG++SHP    +Y  LDEI+ RL+  GY  N 
Sbjct: 422 RDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNT 481

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++EE  +E AL+LHSE+LAIAY  +   P   IRIVKNLR+C DCH   K+ISK
Sbjct: 482 GEVLLDLDEEG-KEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISK 540

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDY 654
            +NREI++RD  RFHHF+ G CSC DY
Sbjct: 541 EFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 152/341 (44%), Gaps = 74/341 (21%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSS------------------------ 87
           +Q+H Q+L  GL  DP+  + L   ++ C   TF+                         
Sbjct: 80  RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139

Query: 88  --LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFP 143
             +  AR++FDQ+P+ N+ +W+ +I  Y S  E   +  +F  LQ +  S   PNEFT  
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-K 202
            V+ A ARL   + G+ +H  + K+  + D+ +  SLI  YA CG +  A C+F  +G +
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           KDV++W++MI+ F   G  E+ +EL+  M  + V+P+ VT VAVL AC        G   
Sbjct: 260 KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVH------GGLV 313

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           +E    F  +     V+P               G M                        
Sbjct: 314 SEGNEYFKRMMNEYGVSP----------MIQHYGCM------------------------ 339

Query: 323 LIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYG 362
            +D+Y++ G ++ A  V  ++    DV +W  ++ G  ++G
Sbjct: 340 -VDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/552 (41%), Positives = 335/552 (60%), Gaps = 50/552 (9%)

Query: 107  NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
            NT++R  + S  P     + L+L       P+  T+P +I+A ARL+  R G+ +H    
Sbjct: 776  NTVLRIAAGSPRP----RVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAA 831

Query: 167  KSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKA 224
            K+ F   +F+ NSL+H Y  CG    A+ VF  + +  +++VSWNSM++ F   G     
Sbjct: 832  KNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGR---- 887

Query: 225  IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
                                                 PNE L++F E+ L  +  PD FT
Sbjct: 888  -------------------------------------PNEVLTVFWEM-LGVDFAPDGFT 909

Query: 285  FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
             VSVL+ACA+ GA+ +G ++H  ++K G+  N +++ +LID+Y KCG+++ A  +F  + 
Sbjct: 910  IVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMG 969

Query: 345  -SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
              R V  W+++I G A  G G+EAL+LFS M+  K+ P  +T   VL ACSH GLVD+G 
Sbjct: 970  LGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGF 1029

Query: 404  MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             +F++M+  YG+ P ++H  CMVD+LGRAG ++EA ++I  MP+ P A VW  LLG+C +
Sbjct: 1030 RYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAM 1089

Query: 464  HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
            H+ +EL + A   L+EL+P + G  VLLSN+YA  G W +V  LRK M    ++K PG S
Sbjct: 1090 HKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHS 1149

Query: 524  SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
             +E+   +++F+ G+ SHP  ++IY  L EI  RL+  GY+P  S++L  +EEE+ +E A
Sbjct: 1150 LVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEE-KETA 1208

Query: 584  LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
            LN HSERLAIA+ L+   P  PIRI+KNLR+CGDCH    LISK+Y+REI++RDR RFHH
Sbjct: 1209 LNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHH 1268

Query: 644  FRGGNCSCMDYW 655
            F+GG CSC DYW
Sbjct: 1269 FQGGACSCKDYW 1280


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/628 (40%), Positives = 364/628 (57%), Gaps = 36/628 (5%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +L+        L+ +H  ++ +G    P   +      +L + + L YAR +  Q P   
Sbjct: 11  TLLPSLAEASHLRALHAHLVVSGRLASPSHLAAFLA--SLASSNHLSYARLVLPQRP-AT 67

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL---------- 152
           L   N  IRA +    P  +F  F  L    P  P+ ++  F+++AA  L          
Sbjct: 68  LLAHNAFIRALARGPRPCLAFAAFRDL----PLPPDHYSLNFLVRAATALVASAAEEKHV 123

Query: 153 ---VQFRVGQAI--HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
              V  R+ QA+  HG  ++     D  + + ++  YA  GD+A +   F  I   DVV 
Sbjct: 124 SAEVNARL-QAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVC 182

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
             +M++    GG  + A +L+  M     + D V   A+++       +  GR   EAL 
Sbjct: 183 VTAMVAALAAGGDVDAARDLFDGMP----QRDHVAWSAMIAGY-----MHVGR-SREALM 232

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+ LS      E T VSVL+ACAQ+G +D G  +H  ++ +G++++  L T+L+DMY
Sbjct: 233 LFDEM-LSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 291

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG +  A+EVF ++  R+V+ W++ ++G AM G G E L LF RM+ A ++PN V+F 
Sbjct: 292 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 351

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL  CS +GLVDEGR  F+ M+  YGV P  +HY CMVD+ GRAG LD+A+ FI  MP+
Sbjct: 352 AVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPM 410

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   VWGALL A +IH +V+L +YA   LL +E EN  A V LSNIYA++  W  VS +
Sbjct: 411 EPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRV 470

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M+  G+KK PG S+IEV+G++H+F  G   HP   EI   L E+  RL+  GY  N 
Sbjct: 471 RGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANT 530

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  +EEE+ +E A++LHSE+LA+A+GLI +     IRIVKNLRVC DCH   KL+SK
Sbjct: 531 REVLFDIEEEE-KEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSK 589

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++NREI++RDR RFHHF+GG CSC DYW
Sbjct: 590 VFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/605 (38%), Positives = 352/605 (58%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  + ++H ++L+TG    P +  +L   CA    +SL YAR +FD I  P+ + +NT+I
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           RA++ S+      +     +      P+ FTFPFV+KA ARL   + G  +H ++ K  F
Sbjct: 61  RAHADSSPSFSLSLFSKMAMAGVS--PDHFTFPFVLKACARL---QTGLDLHSLLFKLGF 115

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + D+++ N LIHFY  CG L  A  VF  + ++D+VSW+SMI+ F + GF          
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGF---------- 165

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                            EAL++F  +QL   V PDE   +SV+S
Sbjct: 166 -------------------------------GYEALALFQRMQLVGTVKPDEVIVLSVVS 194

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + LG +++G  I   + + G++    L T+L+DM+++CG +++++ VF  +  R+V  
Sbjct: 195 AISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLT 254

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G A++G   EAL +F  M+    +P+ VTFT VL ACSH GLV EG   F  + 
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR 314

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY CMVD+LGRAGLL+EA +F++ MPI P + +W  LLGAC  H  +ELA
Sbjct: 315 NEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + EL+  + G  VLLSN+Y   G+W   + +R  MR   + K+PGCS I VN  
Sbjct: 375 EKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHL 434

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH+F+AG+++HP  + I   L  ++  LK  GY P+ S++L  +EEE+ +E  L  HSE+
Sbjct: 435 IHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEE-KESTLGYHSEK 493

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ L+  + S+ IR++KNLR+C DCH   K  S ++ REI++RDR RFHHF  G+CS
Sbjct: 494 LAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCS 553

Query: 651 CMDYW 655
           C DYW
Sbjct: 554 CRDYW 558



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 117/237 (49%), Gaps = 8/237 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C  ++    +H+ + + G   D Y  + L      G    L++A ++F+++P+ +L
Sbjct: 93  VLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIH--FYGCCGFLDFALKVFEEMPERDL 150

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +W+++I  ++ +    ++  +F ++       P+E     V+ A + L    +G+ I G
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            + ++  E  + +  +L+  ++ CG +  +  VF  +G+++V++W ++I+G    G   +
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           A+ ++ EM     +PD VT   VL AC+       G   +E   +F  ++    + P
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSH------GGLVSEGWHVFESIRNEYGMEP 321


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/620 (36%), Positives = 362/620 (58%), Gaps = 53/620 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMF 95
           H   +   Q KN+   ++IH  +  +    D +   S   L+  C      S+  A ++F
Sbjct: 55  HAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCG-----SVVEAHKVF 109

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++ + ++ +W +LI  Y+ +  P ++  +   ++    + PN FTF  ++KAA      
Sbjct: 110 DKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADS 168

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G  IH + +K  + +D+++ ++L+  YA CG + MA  VF  +  K+ VSWN++ISGF
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
                                              A+K D E       AL +F E+Q  
Sbjct: 229 -----------------------------------ARKGDGE------TALMVFAEMQ-R 246

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                  FT+ S+ S  A +GA++ G  +HA M K   KL  ++  +++DMY K G++  
Sbjct: 247 NGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMID 306

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  V ++D+  W++M+  FA YG G+EA+  F  M+++ +  N +TF  +L ACSH
Sbjct: 307 ARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSH 366

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV EG+ +F+ ++  Y + P ++HY  +VD+LGRAGLL+ A+ FI KMP+ P A+VWG
Sbjct: 367 GGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWG 425

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL AC++H+N ++ ++A  H+ +L+P++ G  VLL NIYA TG WD  + +RK M+ +G
Sbjct: 426 ALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATG 485

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KKEP CS +E+   +H F+A + +HP  +EIY   DEI  +++  GYVP+  ++L  V+
Sbjct: 486 VKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVD 545

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E++ +E  L  HSE++A+A+ LI +     IRI+KN+R+CGDCH+  K ISK++ REI++
Sbjct: 546 EQE-REANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVV 604

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G+CSC DYW
Sbjct: 605 RDTNRFHHFSNGSCSCGDYW 624



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  + P    + + ++ACAQ   +D   +IH  +     + + +L  SLI +Y KCG++ 
Sbjct: 44  SGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVV 103

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC- 393
           +A +VF  ++ +D+  W+++IAG+A      EA+ L   M + + KPN  TF ++L A  
Sbjct: 104 EAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163

Query: 394 --SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
             + SG+  +      + +    V  G    + ++DM  R G +D A    +K+    G 
Sbjct: 164 AYADSGIGGQIHALAVKCDWHEDVYVG----SALLDMYARCGKMDMATAVFDKLDSKNGV 219

Query: 452 SVWGALL 458
           S W AL+
Sbjct: 220 S-WNALI 225


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/646 (38%), Positives = 372/646 (57%), Gaps = 78/646 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY----------------SASKLFTPCA--- 81
           L+K C   K  ++ +QIH  +L+ G   D Y                 A K+F   +   
Sbjct: 109 LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 168

Query: 82  -------LGTFSSLEY---AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
                  +  ++S  Y   A++MFD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 169 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM- 227

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y  CG++ 
Sbjct: 228 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 288 TACGLFEGLSYKDVISWNTLIGGYTH-------MNLYKE--------------------- 319

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L    +P++ T +S+L ACA LGA++IG  IH  + K 
Sbjct: 320 -------------ALLLFQEM-LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+       TSLIDMY KCG+++ A +VF ++ +R +  W+ MI GFAM+G    A D
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++ +++P+ +TF  +L ACSHSG++D GR  F  M+  Y + P ++HY CM+D+L
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACK++ NVEL E    +L+++EP+N G+ V
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYV 545

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V+++R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 546 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 256/460 (55%), Gaps = 21/460 (4%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQ 97
           HP  SL+  CK ++ L+ IH QM++TGL    Y+ SKL   C L   F  L YA  +F+ 
Sbjct: 3   HPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFET 62

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I +PNL  WNT+ R ++ S++P+ +  +++ ++ +    PN +TFPF++K+ A+   FR 
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLLPNCYTFPFLLKSCAKSKAFRE 121

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           GQ IHG V+K  ++ DL++  SLI  Y   G L  A  VF     +DVVS+ ++I+G+  
Sbjct: 122 GQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYAS 181

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G+   A +++ E+ +++V    V+  A++S  A+  +        EAL +F E+ +  N
Sbjct: 182 KGYIASAQKMFDEIPIKDV----VSWNAMISGYAETGN------NKEALELFKEM-MKTN 230

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PDE T VSV+SACAQ  ++++G Q+H+ +   G   N  +  +LID+Y KCG ++ A 
Sbjct: 231 VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAC 290

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  +  +DV  W+T+I G+      +EAL LF  M  +   PN VT  ++L AC+H G
Sbjct: 291 GLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLG 350

Query: 398 LVDEGR---MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            ++ GR   ++ N+   + GV     H T ++DM  + G ++ A +  + + +    S W
Sbjct: 351 AIEIGRWIHVYINKR--LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSW 407

Query: 455 GALLGACKIHENVELAEYACSHLL--ELEPENHGALVLLS 492
            A++    +H     A    S +   E+EP++   + LLS
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 447


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/617 (38%), Positives = 347/617 (56%), Gaps = 44/617 (7%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+ SLIK C +  QL QIH  ++ T    DP  + +  T  A   F  L Y+R +FD + 
Sbjct: 29  PLISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLT 88

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P +  +N ++RAYS S  P++   ++  +        +  +  F +K+  +L+    G 
Sbjct: 89  NPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVR-ADPLSSSFAVKSCIKLLSLLFGI 147

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  +  +  + D  +  S++  Y+ CG    A  +F  + +KDVV+WN +IS      
Sbjct: 148 QIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLIS------ 201

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV- 278
                                      L+   + RD         AL +F  +Q    + 
Sbjct: 202 --------------------------CLTRNKRTRD---------ALGLFEIMQSPTYLC 226

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD+ T + +L ACA L A++ G +IH  +++ G      L  SLI MY++CG +DKA E
Sbjct: 227 QPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYE 286

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  ++V  WS MI+G +M G GREA++ F  MQ+  V+P   TFT VL ACSH GL
Sbjct: 287 VFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGL 346

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VDEG  FF++M   + + P V HY C+VD+LGRAG+LD+A E I  M + P A++W  LL
Sbjct: 347 VDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLL 406

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH +  L E    HL+EL+ +  G  VLL NIY+  G WD V+ELRK M+  G+  
Sbjct: 407 GACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYT 466

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            P C++IE+NG +H+F   + SHP+  +IY +LDEI  +LK  GY    S  L  +E +D
Sbjct: 467 TPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKD 526

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +  AL+ HSE+LAIA+G+++  P + IRI  N+R C DCH  AK IS +YNR++++RDR
Sbjct: 527 -KGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDR 585

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G CSC D+W
Sbjct: 586 SRFHHFQEGRCSCNDFW 602


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/646 (38%), Positives = 364/646 (56%), Gaps = 78/646 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C   K  K+ +QIH  +L+ G   D +  + L                        
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRD 199

Query: 77  ---FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +E A+++FD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 200 VVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM- 258

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I NSL+  Y+ CG+L 
Sbjct: 259 KTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELE 318

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 319 TACGLFEGLLYKDVISWNTLIGGYTH-------MNLYKE--------------------- 350

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L     P++ T +S+L ACA LGA+DIG  IH  + K 
Sbjct: 351 -------------ALLLFQEM-LRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +       L TSLIDMY KCG+++ A +VF+++  + +  W+ MI GFAM+G    A D
Sbjct: 397 LKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFD 456

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++  ++P+ +TF  +L ACS SG++D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 457 IFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLL 516

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACKI  NVEL E    +L+++EPEN G  V
Sbjct: 517 GHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYV 576

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V+++R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 577 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 695

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 696 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 267/491 (54%), Gaps = 23/491 (4%)

Query: 6   PQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG 65
           P  + + S P   LP   +P   ++ N      HP  SL+  CK ++ L+ IH QM++TG
Sbjct: 7   PLTVPSSSYPFHFLPSSSDPPYDSLRN------HPSLSLLHNCKTLQSLRLIHAQMIKTG 60

Query: 66  LFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
           L    Y+ SKL   C +   F  L YA  +F+ I +PNL  WNT+ R ++ S++P+ +  
Sbjct: 61  LHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
           +++ ++ +    PN +TFPF++K+ A+   F+ GQ IHG V+K  ++ DLF+  SLI  Y
Sbjct: 121 LYVCMI-SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVY 179

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
              G L  A  VF     +DVVS+ ++I G+   G+ E A +L+ E+ +++V    V+  
Sbjct: 180 VQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDV----VSWN 235

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
           A++S  A     E G +  EAL +F E+ +  N+ PDE T V+V+SACAQ G++++G Q+
Sbjct: 236 AMISGYA-----ETGNY-KEALELFKEM-MKTNIRPDESTMVTVVSACAQSGSIELGRQV 288

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H+ +   G   N  +  SL+D+Y+KCG L+ A  +F  +  +DV  W+T+I G+      
Sbjct: 289 HSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLY 348

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYT 423
           +EAL LF  M  +  +PN VT  ++L AC+H G +D GR     ++  +          T
Sbjct: 349 KEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRT 408

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL--LELE 481
            ++DM  + G ++ A +    + +    S W A++    +H   + A    S +  + +E
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467

Query: 482 PENHGALVLLS 492
           P++   + LLS
Sbjct: 468 PDDITFVGLLS 478



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 124/273 (45%), Gaps = 40/273 (14%)

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK---ALEVFHT 342
           +S+L  C  L ++ +   IHA+M K G+    Y  + L+++     + D    A+ VF T
Sbjct: 37  LSLLHNCKTLQSLRL---IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFET 93

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++  ++ +W+TM  G A+      AL L+  M    + PN+ TF  +L +C+ S    EG
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEG 153

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---------IVPGASV 453
           +     +  + G    +  +T ++ +  + G L++A +  ++ P         ++ G + 
Sbjct: 154 QQIHGHVLKL-GYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYAS 212

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            G +  A K+ + + + +            +  A++   + YA+TG +    EL K M  
Sbjct: 213 RGYIESAQKLFDEIPVKDVV----------SWNAMI---SGYAETGNYKEALELFKEMMK 259

Query: 514 SGLKKE--------PGCS---SIEVNGEIHKFL 535
           + ++ +          C+   SIE+  ++H ++
Sbjct: 260 TNIRPDESTMVTVVSACAQSGSIELGRQVHSWI 292


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/605 (39%), Positives = 345/605 (57%), Gaps = 53/605 (8%)

Query: 54  LKQIHTQMLRTGLFFDPYSASK---LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +K++H   +  GL  D    S    ++  C      S++ A+ +FD++   N+ TWN +I
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCG-----SIDDAQLIFDKLAVRNVTTWNAMI 408

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
              +      ++  +FLQ+     +FP+  TF  ++ A          + +H   I +  
Sbjct: 409 GGVAQQKCGREALSLFLQM-RREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL 467

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
            D L + N+L+H YA CG+   A  VF  + +++V +W  MISG  Q G   +A  L+ +
Sbjct: 468 VD-LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQ 526

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M                                          L + + PD  T+VS+LS
Sbjct: 527 M------------------------------------------LREGIVPDATTYVSILS 544

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA  GA++   ++H+     G+  +  +  +L+ MY KCG++D A  VF  +  RDV+ 
Sbjct: 545 ACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYS 604

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MI G A +G G +ALDLF +M+    KPN  +F  VL ACSH+GLVDEGR  F  + 
Sbjct: 605 WTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLT 664

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P ++HYTCMVD+LGRAG L+EA  FI  MPI PG + WGALLGAC  + N+E+A
Sbjct: 665 QDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA 724

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E+A    L+L+P++    VLLSNIYA TG W+    +R  M+  G++KEPG S IEV+ +
Sbjct: 725 EFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQ 784

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH F+ G++SHP  KEIY+KL +++ RLK+ GYVP+   +L+  ++E  +EQAL  HSE+
Sbjct: 785 IHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQE-YKEQALCSHSEK 843

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAI YGL+      PIR+ KNLRVC DCHT  K ISK+  REI+ RD  RFHHF+ G CS
Sbjct: 844 LAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCS 903

Query: 651 CMDYW 655
           C DYW
Sbjct: 904 CGDYW 908



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 194/434 (44%), Gaps = 54/434 (12%)

Query: 33  GHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFS 86
           G Q +     S++K C    ++K  K+IH  ++++G   D    + L   +  C      
Sbjct: 25  GGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG----- 79

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           S++ A+ +FD++ + N+ +W  +I   +      ++F  FLQ+     + PN +T+  ++
Sbjct: 80  SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQM-QREGFIPNSYTYVSIL 138

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A A        + +H   + +    DL + N+L+H YA  G +  A  VF  + ++D+ 
Sbjct: 139 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIF 198

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SW  MI G  Q G  ++A  L+ +ME     P+  T +++L+A                 
Sbjct: 199 SWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA----------------- 241

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                                  SA    GA++   ++H    K G   +  +  +LI M
Sbjct: 242 -----------------------SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHM 278

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG++D A  VF  +  RDV  W+ MI G A  GCG EA  +F +MQ+    P++ T+
Sbjct: 279 YAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTY 338

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            ++L     +G  +  +        V G+V  ++  +  V M  R G +D+A    +K+ 
Sbjct: 339 LSLLNTHVSTGAWEWVKEVHKHAVEV-GLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 447 IVPGASVWGALLGA 460
            V   + W A++G 
Sbjct: 398 -VRNVTTWNAMIGG 410



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 213/501 (42%), Gaps = 90/501 (17%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           ++ +K++H+  +  GL  D    + L    A     S++ AR +FD + + ++++W  +I
Sbjct: 147 LEWVKEVHSHAVNAGLALDLRVGNALVHMYA--KSGSIDDARVVFDGMVERDIFSWTVMI 204

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA--RLVQFRVGQAIHGMVIKS 168
              +      ++F +FLQ+       PN  T+  ++ A+A          + +H    K+
Sbjct: 205 GGLAQHGRGQEAFSLFLQM-ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKA 263

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F  DL + N+LIH YA CG +  A  VF  +  +DV+SWN+MI G  Q G   +A  ++
Sbjct: 264 GFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIF 323

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            +M+ E   PD                                            T++S+
Sbjct: 324 LKMQQEGFVPDST------------------------------------------TYLSL 341

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L+     GA +   ++H    + G+  +  + ++ + MY +CG++D A  +F  +  R+V
Sbjct: 342 LNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNV 401

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-----------SHSG 397
             W+ MI G A   CGREAL LF +M+     P+A TF N+L A             HS 
Sbjct: 402 TTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSY 461

Query: 398 LVDEG-----------RMFFNQMEPVYG-------VVPGVKHYTCMVDMLGRAGLLDEAV 439
            +D G            M+      +Y        V   V  +T M+  L + G   EA 
Sbjct: 462 AIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAF 521

Query: 440 EFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLL------ELEPENHGALVL 490
               +M    IVP A+ + ++L AC     +E  +   SH +      +L   N  ALV 
Sbjct: 522 SLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGN--ALV- 578

Query: 491 LSNIYAKTGKWDNVSELRKHM 511
             ++YAK G  D+   +   M
Sbjct: 579 --HMYAKCGSVDDARRVFDDM 597



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 179/394 (45%), Gaps = 69/394 (17%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           PNE T+  ++KA    V  + G+ IH  +I+S F+ D+ +  +L++ Y  CG +  A  +
Sbjct: 28  PNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLI 87

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + +++V+SW  MI G    G  ++A   + +M+ E                      
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI------------------- 128

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                                  P+ +T+VS+L+A A  GA++   ++H+     G+ L+
Sbjct: 129 -----------------------PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALD 165

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             +  +L+ MY K G++D A  VF  +  RD+F W+ MI G A +G G+EA  LF +M+ 
Sbjct: 166 LRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER 225

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFF----NQMEPVYGVVPGVKHYTCMVDMLGRA 432
               PN  T+ ++L A   S +   G + +    ++     G +  ++    ++ M  + 
Sbjct: 226 GGCLPNLTTYLSILNA---SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKC 282

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH-----LLELE-----P 482
           G +D+A    + M      S W A++G         LA+  C H      L+++     P
Sbjct: 283 GSIDDARLVFDGMCDRDVIS-WNAMIGG--------LAQNGCGHEAFTIFLKMQQEGFVP 333

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           ++   L LL N +  TG W+ V E+ KH    GL
Sbjct: 334 DSTTYLSLL-NTHVSTGAWEWVKEVHKHAVEVGL 366



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 57/314 (18%)

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI G+ + G+ E A+++Y +M  E  +P+E+T +++L AC     L++G+          
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGK---------- 50

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                                           +IHA + + G + +  + T+L++MY KC
Sbjct: 51  --------------------------------KIHAHIIQSGFQSDVRVETALVNMYVKC 78

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G++D A  +F  +  R+V  W+ MI G A YG G+EA   F +MQ     PN+ T+ ++L
Sbjct: 79  GSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSIL 138

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            A + +G ++  +   +      G+   ++    +V M  ++G +D+A    + M +   
Sbjct: 139 NANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARVVFDGM-VERD 196

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL--------VLLSNIYAKTGKWD 502
              W  ++G    H   + A       L L+ E  G L        +L ++    TG  +
Sbjct: 197 IFSWTVMIGGLAQHGRGQEA-----FSLFLQMERGGCLPNLTTYLSILNASAITSTGALE 251

Query: 503 NVSELRKHMRVSGL 516
            V E+ KH   +G 
Sbjct: 252 WVKEVHKHAGKAGF 265


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/628 (39%), Positives = 361/628 (57%), Gaps = 36/628 (5%)

Query: 43   SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
            +L+        L+ +H  ++ +G    P   +      +L + + L YAR +  Q P   
Sbjct: 1216 TLLPSLAEASHLRALHAHLVVSGRLASPSHLAAFLA--SLASSNHLSYARLVLPQRPA-T 1272

Query: 103  LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI-------------KAA 149
            L   N  IRA +    P  +F  F  L    P  P+ ++  F++             K  
Sbjct: 1273 LLAHNAFIRALARGPRPCLAFAAFRDL----PLPPDHYSLNFLVRAATALVASAAEEKHV 1328

Query: 150  ARLVQFRVGQAI--HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
            +  V  R+ QA+  HG  ++     D  + + ++  YA  GD+A +   F  I   DVV 
Sbjct: 1329 SAEVNARL-QAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVC 1387

Query: 208  WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
              +M++    GG  + A +L+  M       D V   A+++       +  GR   EAL 
Sbjct: 1388 VTAMVAALAAGGDVDAARDLFDGMPQR----DHVAWSAMIAGY-----MHVGR-SREALM 1437

Query: 268  IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
            +F E+ LS      E T VSVL+ACAQ+G +D G  +H  ++ +G++++  L T+L+DMY
Sbjct: 1438 LFDEM-LSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 1496

Query: 328  TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            +KCG +  A+EVF ++  R+V+ W++ ++G AM G G E L LF RM+ A ++PN V+F 
Sbjct: 1497 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 1556

Query: 388  NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
             VL  CS +GLVDEGR  F+ M+  YGV P  +HY CMVD+ GRAG LD+A+ FI  MP+
Sbjct: 1557 AVLRGCSMAGLVDEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPM 1615

Query: 448  VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
             P   VWGALL A +IH +V+L +YA   LL +E EN  A V LSNIYA++  W  VS +
Sbjct: 1616 EPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRV 1675

Query: 508  RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
            R  M+  G+KK PG S+IEV+G++H+F  G   HP   EI   L E+  RL+  GY  N 
Sbjct: 1676 RGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANT 1735

Query: 568  SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
              +L  +EEE+ +E A++LHSE+LA+A+GLI +     IRIVKNLRVC DCH   KL+SK
Sbjct: 1736 REVLFDIEEEE-KEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSK 1794

Query: 628  LYNREILLRDRYRFHHFRGGNCSCMDYW 655
            ++NREI++RDR RFHHF+GG CSC DYW
Sbjct: 1795 VFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/679 (36%), Positives = 380/679 (55%), Gaps = 77/679 (11%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           L+K C +  +L   K+IH  ++++G   D ++ + L   +  C       +  AR++FD+
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC-----RQVHEARKVFDR 195

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ +L +WNT++  YS +     +  + + L+      P+  T   V+ A + L   R+
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEM-VNLMCEENLKPSFITIVSVLPAVSALRLIRI 254

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IHG  +++ F+  + I+ +L+  YA CG L  A  +F  + +++VVSWNSMI  +VQ
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 218 -----------------------------------------GGFFEK---AIELYREMEM 233
                                                    G F  K    +EL R + +
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374

Query: 234 EN------VKPDEVTMVAVLSACAKKRDL-----------EFGRWPNEALSIFHELQLSK 276
            N       K  EV   A +    + R +           + GR P EAL+ F ++Q ++
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGR-PIEALNYFSQMQ-AR 432

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PD FT+VSV++A A+L        IH  + +  +  N ++TT+L+DMY KCG +  A
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA 492

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  R V  W+ MI G+  +G G+ AL+LF  MQ+  ++PN VTF +V+ ACSHS
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHS 552

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+ G   F+ M+  Y + P + HY  MVD+LGRAG L+EA +FI +MP+ P  +V+GA
Sbjct: 553 GLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           +LGAC+IH+NV  AE     L EL PE+ G  VLL+NIY     W+ V ++R  M   GL
Sbjct: 613 MLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +K PGCS +E+  E+H F +G ++HP  K+IY+ L++++ ++K  GYVP+ + +L L  E
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGL--E 730

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           +DV+EQ L+ HSE+LAI++GL++      I + KNLRVC DCH   K IS +  REI++R
Sbjct: 731 DDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVR 790

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G CSC DYW
Sbjct: 791 DMQRFHHFKNGACSCGDYW 809



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 259/578 (44%), Gaps = 119/578 (20%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + HP   L+++C ++K+L+ I   + + GL+ +    +KL +      + S++ A  +F+
Sbjct: 36  YEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVS--LFCRYGSVDEAARVFE 93

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I +     + T+++ ++  ++  ++   F+++  +    P  + F +++K      + R
Sbjct: 94  PIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRM-RDDEVEPVVYNFTYLLKVCGDEAELR 152

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           VG+ IHG+++KS F  DLF    L + YA C  +  A  VF  + ++D+VSWN++++G+ 
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN------------- 263
           Q G    A+E+   M  EN+KP  +T+V+VL A +  R +  G+  +             
Sbjct: 213 QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 264 ---------------EALSIFHELQLSKNV--------------NPDEF----------- 283
                          +   +  +  L +NV              NP E            
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 284 ---TFVSV---LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
              T VSV   L ACA LG ++ G  IH    +  +  N  +  SLI MY KC  +D A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH-- 395
            +F  ++SR +  W+ MI GFA  G   EAL+ FS+MQ   VKP+  T+ +V+ A +   
Sbjct: 393 SMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELS 452

Query: 396 ------------------------SGLVDE---------GRMFFNQMEPVYGVVPGVKHY 422
                                   + LVD           R+ F+ M   +     V  +
Sbjct: 453 ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH-----VTTW 507

Query: 423 TCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
             M+D  G  G+   A+E  E+M    I P    + +++ AC  H  +  A   C H+++
Sbjct: 508 NAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS-HSGLVEAGLKCFHMMK 566

Query: 480 ----LEP--ENHGALVLLSNIYAKTGK----WDNVSEL 507
               +EP  +++GA+V   ++  + G+    WD + ++
Sbjct: 567 ENYSIEPSMDHYGAMV---DLLGRAGRLNEAWDFIMQM 601


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/631 (38%), Positives = 369/631 (58%), Gaps = 70/631 (11%)

Query: 39  HPVFS-------LIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT---- 84
           H VF+       LIK C     +++ K++H  +   G  ++P    K+F    L      
Sbjct: 49  HGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKG--YEP----KMFVVNTLLNMYVK 102

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F+ LE A ++FD++P+ N+ +W T+I AYS+        +  L L++     PN FT+  
Sbjct: 103 FNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN--DKALKCLILMFREGVRPNMFTYSS 160

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++A   L   R    +H  +IK+  E D+F+ ++LI  Y+   DL  A  VF  +  +D
Sbjct: 161 VLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRD 217

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +V WNS+I GF Q                                             NE
Sbjct: 218 LVVWNSIIGGFAQNSD-----------------------------------------GNE 236

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL++F  ++ +  +  D+ T  SVL AC  L  +++G Q+H  + K     +  L  +LI
Sbjct: 237 ALNLFKRMKRAGFL-ADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALI 293

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ A   F  +  +DV  WSTM+AG A  G  R+AL+LF  M+E+  +PN +
Sbjct: 294 DMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYI 353

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GLV++G  +F  M+ ++GV PG +HY C++D+LGRAG LDEAV+ I +
Sbjct: 354 TVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHE 413

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P +  W  LLGAC++H NV+LA YA   ++ELEPE+ G  +LLSNIYA T +W++V
Sbjct: 414 MECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDV 473

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +E+RK M   G++K PGCS IEV+ +IH F+ G++SHP  +EI  +L++++ R+   GYV
Sbjct: 474 AEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYV 533

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +LQ +E E  +E +L  HSE+LAI +GL+++   + +RI KNLR+CGDCH  AK+
Sbjct: 534 PDTNFVLQDLEGEQ-KEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKV 592

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +S++ +R I++RD  R+HHF+ G CSC DYW
Sbjct: 593 VSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/569 (40%), Positives = 348/569 (61%), Gaps = 44/569 (7%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           ++E   EM  Q  +P++ TWN L+  ++   +  ++ + F Q +++    PN  T    +
Sbjct: 448 AIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG-KAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A  ++   ++G+ IHG V+++  E    + ++LI  Y+ C  L +A  VF  +  +DVV
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            WNS+IS                                   ACA+      GR  N AL
Sbjct: 567 VWNSIIS-----------------------------------ACAQS-----GRSVN-AL 585

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +  E+ LS NV  +  T VS L AC++L A+  G +IH  + + G+    ++  SLIDM
Sbjct: 586 DLLREMNLS-NVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y +CG++ K+  +F  +  RD+  W+ MI+ + M+G G +A++LF + +   +KPN +TF
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           TN+L ACSHSGL++EG  +F  M+  Y + P V+ Y CMVD+L RAG  +E +EFIEKMP
Sbjct: 705 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P A+VWG+LLGAC+IH N +LAEYA  +L ELEP++ G  VL++NIY+  G+W++ ++
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R  M+  G+ K PGCS IEV  ++H F+ G++SHPL ++I +K++ +   +K  GYVP+
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPD 884

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            + +LQ V +ED +E +L  HSE++A+A+GLIS     P+RI+KNLRVCGDCH+  K IS
Sbjct: 885 TNFVLQDV-DEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFIS 943

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+  R+I++RD YRFHHF  G CSC DYW
Sbjct: 944 KVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 274/586 (46%), Gaps = 62/586 (10%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLF-TPCALGTFSSLEYAREMFDQI 98
           S++++C+ +  L+   Q+H Q++  G+    +  S+L    C  G    +E AR MFD++
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC---VEDARRMFDKM 150

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            + N+++W  ++  Y    +  ++  +F  +V N    P+ F FP V KA + L  +RVG
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMV-NEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + ++  ++   FE +  +  S++  +  CG + +A   F  I  KDV  WN M+SG+   
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAK--------KRDLEFGRW----PN--- 263
           G F+KA++   +M++  VKPD+VT  A++S  A+        K  LE G      PN   
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 264 ---------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK- 307
                          EALS+F ++ L + V P+  T  S +SAC  L  +  G +IH   
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVL-EGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           +K + +  +  +  SL+D Y KC +++ A   F  +K  D+  W+ M+AG+A+ G   EA
Sbjct: 389 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEA 448

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           ++L S M+   ++P+ +T+  ++   +  G       FF +M  + G+ P     +  + 
Sbjct: 449 IELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALA 507

Query: 428 MLGRAGLLDEAVE---FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
             G+   L    E   ++ +  I     V  AL+    ++   +  E ACS   EL   +
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALI---SMYSGCDSLEVACSVFSELSTRD 564

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE--------PGCS---SIEVNGEIHK 533
                 + +  A++G+  N  +L + M +S ++          P CS   ++    EIH+
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 624

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           F+        C  I + L ++  R    G +     +  L+ + D+
Sbjct: 625 FII-RCGLDTCNFILNSLIDMYGRC---GSIQKSRRIFDLMPQRDL 666



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 126/270 (46%), Gaps = 34/270 (12%)

Query: 263 NEALSIFHELQLSKNVNPDEFT--FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
           N A  +   + L+   NPDE    + S+L  C +L  + +G Q+HA++   G+ +  +L 
Sbjct: 71  NNAAMLLSSMDLT---NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLG 127

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           + L+++Y + G ++ A  +F  +  R+VF W+ ++  +   G   E + LF  M    V+
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 187

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLD 436
           P+   F  V  ACS       G+  ++ M  +     G +  +C    ++DM  + G +D
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSI-----GFEGNSCVKGSILDMFIKCGRMD 242

Query: 437 EAVEFIEKMP---------IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
            A  F E++          +V G +  G    A K   +++L+         ++P+    
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLS--------GVKPDQVTW 294

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
             ++S  YA++G+++  S  +  + + GLK
Sbjct: 295 NAIISG-YAQSGQFEEAS--KYFLEMGGLK 321



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYS 72
           S   + L R  N + + VN        P  S +     ++Q K+IH  ++R GL    + 
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA---LRQGKEIHQFIIRCGLDTCNFI 637

Query: 73  ASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
            + L      G   S++ +R +FD +PQ +L +WN +I  Y      + +  +F Q    
Sbjct: 638 LNSLID--MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF-RT 694

Query: 133 SPYFPNEFTFPFVIKAAA 150
               PN  TF  ++ A +
Sbjct: 695 MGLKPNHITFTNLLSACS 712


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/606 (38%), Positives = 362/606 (59%), Gaps = 41/606 (6%)

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A E+FD++   ++ +WN++I  Y S+    +   I+ Q++Y      +  T   V+  
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A      +G+A+H + IKSSFE  +  SN+L+  Y+ CGDL  A  VF  +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE---- 264
            SMI+G+ + G  + AI+L ++ME E VK D V + ++L ACA+   L+ G+  ++    
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 265 -------------------------ALSIFHELQLSK---------NVNPDEFTFVSVLS 290
                                    A S+F  + +            + PD  T   VL 
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLP 440

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA L A++ G +IH  + + G   + ++  +L+D+Y KCG L  A  +F  + S+D+  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MIAG+ M+G G EA+  F+ M++A ++P+ V+F ++L ACSHSGL+++G  FF  M+
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+L R G L +A EFIE +PI P A++WGALL  C+ + ++ELA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + ELEPEN G  VLL+NIYA+  KW+ V  LR+ +   GL+K PGCS IE+ G+
Sbjct: 621 EKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 531 IHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++ F++G  SSHP  K I S L ++  ++K  G+ P   + L +  +E  +E AL  HSE
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYAL-INADEMQKEMALCGHSE 739

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL+++ P + IR+ KNLRVCGDCH +AK +SK   REI+LRD  RFHHF+ G C
Sbjct: 740 KLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYC 799

Query: 650 SCMDYW 655
           SC  +W
Sbjct: 800 SCRGFW 805



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 179/374 (47%), Gaps = 28/374 (7%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T+  V++  A L  F  G+ +H ++  +S   D  +   L+ FYA CGDL     VF  +
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYR---EMEMENVKP-------DEVTMVAVLSAC 250
            KK+V  WN M+S + + G F+++I L++   E  +E  +P       D++    V+S  
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +              L I+ ++ +   ++ D  T +SVL  CA  G + +G  +H+   K
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM-MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
              +     + +L+DMY+KCG+LD AL VF  +  R+V  W++MIAG+   G    A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-----MFFNQMEPVYGVVPGVKHYTCM 425
             +M++  VK + V  T++L AC+ SG +D G+     +  N ME    V         +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC------NAL 393

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK-IHENVELAEYACSHLLELE--P 482
           +DM  + G ++ A      M +V     W  ++G  K     +     AC+ L  LE   
Sbjct: 394 MDMYAKCGSMEAANSVFSTM-VVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGK 452

Query: 483 ENHGALVLLSNIYA 496
           E HG   +L N Y+
Sbjct: 453 EIHG--YILRNGYS 464



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 57/316 (18%)

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYSS 115
           QM + G+  D  + + +   CA     SL+  +++ D I     + NL+  N L+  Y+ 
Sbjct: 342 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399

Query: 116 -----SAEPIQSFMIFLQLV-YNS---PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
                +A  + S M+   ++ +N+      P+  T   V+ A A L     G+ IHG ++
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +  D  ++N+L+  Y  CG L +A  +F MI  KD+VSW  MI+G+   G+  +AI 
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + EM    ++PDEV+ +++L AC+    LE G W       F+ ++   N+ P      
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-W-----RFFYIMKNDFNIEP------ 567

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-S 345
                                      KL  Y    ++D+ ++ GNL KA E   T+  +
Sbjct: 568 ---------------------------KLEHY--ACMVDLLSRTGNLSKAYEFIETLPIA 598

Query: 346 RDVFVWSTMIAGFAMY 361
            D  +W  ++ G   Y
Sbjct: 599 PDATIWGALLCGCRNY 614


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/576 (40%), Positives = 358/576 (62%), Gaps = 14/576 (2%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
            L     L+ A  +    P  N+ +W  LI  YS +    ++   F  ++ +    P+E 
Sbjct: 180 GLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG-IEPDEV 238

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T   ++ A A+L     G+++H +V +        +  +LI  YA CGD+  A+ VF  +
Sbjct: 239 TVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDAL 298

Query: 201 GK-KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           G+ +   SWN+MI G+ + G  + A  L+ +ME      D VT  ++++       +  G
Sbjct: 299 GRGRRPQSWNAMIDGYCKLGHVDVARYLFDQME----DRDLVTFNSLITGY-----IHGG 349

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
           R   EAL +F +++   ++  D FT VS+L+ACA LGA+  G  +HA ++++ ++++ YL
Sbjct: 350 RL-REALLLFMQMR-RHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYL 407

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            T+L+DMY KCG +++A  VF  +  RDV  WS MIAG A  G G+ AL+ F  M+    
Sbjct: 408 GTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           +PN+VT+  +L ACSHS L+DEGR++F +M  ++ + P ++HY CM+D+LGR+GLLDEA+
Sbjct: 468 QPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAM 527

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           + +  MP+ P A +W ++L AC++H++  LA  A  HLL+LEP+     V L NIY  + 
Sbjct: 528 DLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSR 587

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           +W++ S++R+ M   G+KK  G SSI V G++HKF+  + +HP   EI + ++EI  RLK
Sbjct: 588 QWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLK 647

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           S GY P  S +   V+EE+ +E AL  HSE++AIA+GLIS+ P+ P+ I+KNLRVC DCH
Sbjct: 648 SVGYSPITSQITVDVDEEE-KEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCH 706

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  KLIS+++NREI++RDR RFHHFR G CSC D+W
Sbjct: 707 SAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 206/452 (45%), Gaps = 56/452 (12%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKL-------FTPCALGTFSSLEYAREMFDQIPQP 101
           ++++Q  ++H  ++ +G    P SAS L       FTP        L YA  +FD++P  
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPT---DPLHLRYALCLFDRMPCS 66

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR-LVQFRVGQA 160
             + ++T +RA   ++   +S +I  + +  +    + FTF F+ K  AR      + Q 
Sbjct: 67  T-FLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQM 125

Query: 161 IHGMVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +H    ++     +  +SN +IH Y   G    A   F  I  KD V+W ++ISG  + G
Sbjct: 126 LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLG 185

Query: 220 FFE-------------------------------KAIELYREMEMENVKPDEVTMVAVLS 248
             +                               +A++ +  M  + ++PDEVT++ +LS
Sbjct: 186 LLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACA+ +DL FGR         H+L   K +       V+++   A+ G +    ++   +
Sbjct: 246 ACAQLKDLVFGR-------SLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDAL 298

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G +   +   ++ID Y K G++D A  +F  ++ RD+  ++++I G+   G  REAL
Sbjct: 299 GR-GRRPQSW--NAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREAL 355

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
            LF +M+   ++ +  T  ++L AC+  G + +GR     +E    V   +   T ++DM
Sbjct: 356 LLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRL-VEVDIYLGTALLDM 414

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             + G ++EA    + M  V     W A++  
Sbjct: 415 YLKCGRVEEASLVFQAMS-VRDVHTWSAMIAG 445


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/570 (41%), Positives = 340/570 (59%), Gaps = 48/570 (8%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPI---QSFMIFLQLVYNSPYFPNEFTFPFVI 146
           YAR +FDQIP+P  + +N+LIRA SS+A       + +++ +++      PN FT  F +
Sbjct: 79  YARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 138

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDV 205
           KA + +     G+ +H    +   E   ++   L++ YA C ++A+A  VF  M+G K++
Sbjct: 139 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 198

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
            +W++MI G+ + G   +A+ L+REM+  +V PDEVTMV+V+SACAK   L+ GRW    
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRW---- 254

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                                                 +HA + ++GI ++  L+T+LID
Sbjct: 255 --------------------------------------VHAFIDRKGITVDLELSTALID 276

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG +++A  VF  +  RD   WS MI G A++G    AL LFSRM E KV+PN VT
Sbjct: 277 MYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVT 336

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL AC+HSGLV+EGR +++ M+ + G+ P +++Y CMVD+  R+ LLDEA  F+  M
Sbjct: 337 FIGVLSACAHSGLVNEGRRYWSTMQEL-GIKPSMENYGCMVDLFCRSSLLDEAYSFVTGM 395

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
            I P + +W  LL A K     ++ + A   LLELEP N    VLLSN+YA   +WD VS
Sbjct: 396 AIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVS 455

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK M+ + +    GCSSIE+NG +HKF+  + SHP  KEI   L EI  R+   G+ P
Sbjct: 456 YMRKKMKENNVNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKP 515

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
             + +L  V EE+ +E AL  HSERLAIAYGL+  +    IR+VKNLR C DCH VAK++
Sbjct: 516 WTAAVLHDVGEEE-KEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIV 574

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK Y+REI++RDR RFH F  G+CSC D+W
Sbjct: 575 SKSYDREIIVRDRVRFHRFVEGSCSCKDFW 604



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD-QIPQ 100
           +K C  +  L   +Q+H+Q  R GL   PY  + L    A      +  AR +FD  +  
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYA--KCEEVALARTVFDGMVGD 195

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            NL  W+ +I  YS      ++  +F ++   +   P+E T   VI A A+     +G+ 
Sbjct: 196 KNLAAWSAMIGGYSRVGMVNEALGLFREM-QAADVNPDEVTMVSVISACAKAGALDLGRW 254

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  + +     DL +S +LI  YA CG +  A  VF  + ++D  +W++MI G    G 
Sbjct: 255 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGL 314

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            E A++L+  M    V+P+ VT + VLSACA    +  GR
Sbjct: 315 VEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGR 354


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/668 (37%), Positives = 380/668 (56%), Gaps = 66/668 (9%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           +++   +Q+H  +L++G F +  S         L     ++ AR++FD++ + ++ +WN+
Sbjct: 58  RSVHGGEQLHGFILKSG-FGERNSVGNSLVAFYLKN-QRVDSARKVFDEMTERDVISWNS 115

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           +I  Y S+    +   +F+Q++ +            F   A +RL+   +G+A+H + +K
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLIS--LGRAVHSIGVK 173

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F  +    N+L+  Y+ CGDL  A  VF  +  + VVS+ SMI+G+ + G   +A++L
Sbjct: 174 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 233

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----W---------------------- 261
           + EME E + PD  T+ AVL+ CA+ R L+ G+    W                      
Sbjct: 234 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 293

Query: 262 ---PNEALSIFHELQLS-------------------------------KNVNPDEFTFVS 287
                EA  +F E+++                                K  +PDE T   
Sbjct: 294 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL ACA L A D G +IH  + + G   + ++  SL+DMY KCG L  A  +F  + S+D
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 413

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+ MIAG+ M+G G+EA+ LF++M++A ++ + ++F ++L ACSHSGLVDEG  FFN
Sbjct: 414 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 473

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M     + P V+HY C+VDML R G L +A  FIE MPI P A++WGALL  C+IH +V
Sbjct: 474 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 533

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           +LAE     + ELEPEN G  VL++NIYA+  KW+ V  LRK +   GL+K PGCS IE+
Sbjct: 534 KLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 593

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G ++ F+AG+SS+P  + I + L ++ AR+   GY P   + L   EE + +E+AL  H
Sbjct: 594 KGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEME-KEEALCGH 652

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LA+A G+IS    + IR+ KNLRVCGDCH +AK +SKL  REI+LRD  RFH F+ G
Sbjct: 653 SEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDG 712

Query: 648 NCSCMDYW 655
           +CSC  +W
Sbjct: 713 HCSCRGFW 720



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 47/367 (12%)

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD++       WN L+   + S +   S  +F +++ +S    + +TF  V K+ + L  
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRS 59

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ +HG ++KS F +   + NSL+ FY     +  A  VF  + ++DV+SWNS+I+G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +V  G  EK + ++ +M                                          L
Sbjct: 120 YVSNGLAEKGLSVFVQM------------------------------------------L 137

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
              +  D  T VSV + CA    + +G  +H+   K           +L+DMY+KCG+LD
Sbjct: 138 VSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLD 197

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  VF  +  R V  +++MIAG+A  G   EA+ LF  M+E  + P+  T T VL  C+
Sbjct: 198 SAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 257

Query: 395 HSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
              L+DEG+     + E   G    V +   ++DM  + G + EA     +M +    S 
Sbjct: 258 RYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVKDIIS- 314

Query: 454 WGALLGA 460
           W  ++G 
Sbjct: 315 WNTIIGG 321



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 119/216 (55%), Gaps = 5/216 (2%)

Query: 39  HPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           + V +++  C   + L   K++H  +    L FD + ++ L    A     S++ A  +F
Sbjct: 247 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA--KCGSMQEAELVF 304

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            ++   ++ +WNT+I  YS +    ++  +F  L+    + P+E T   V+ A A L  F
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 364

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ IHG ++++ +  D  ++NSL+  YA CG L +A+ +F  I  KD+VSW  MI+G+
Sbjct: 365 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 424

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
              GF ++AI L+ +M    ++ DE++ V++L AC+
Sbjct: 425 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/557 (42%), Positives = 348/557 (62%), Gaps = 13/557 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++FD++ + ++ TW+ LI  +  +    ++   F+ + +      +E      + A A
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM-HKIGVMVDEVVAVSALSACA 387

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L+   +G+ IH + +K   E  + + N+LI+ Y+ CGD+ +A  +F      D++SWNS
Sbjct: 388 NLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNS 447

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MISG+++    + A  ++  M     + D V+  +++S  A+  DL      +E L++F 
Sbjct: 448 MISGYLKCNLVDNAKAIFDSMP----EKDVVSWSSMISGYAQN-DLF-----DETLALFQ 497

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q+S    PDE T VSV+SACA+L A++ G  +HA +K+ G+ +N  L T+LIDMY KC
Sbjct: 498 EMQMS-GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKC 556

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G ++ ALEVF+ +  + +  W+ +I G AM G    +LD+FS M++  V PN +TF  VL
Sbjct: 557 GCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVL 616

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC H GLVDEG+  F  M   + + P VKHY CMVD+LGRAG L EA E + +MP+ P 
Sbjct: 617 GACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPD 676

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
            + WGALLGACK H + E+       L+EL+P++ G  VLLSNIYA  GKWD+V E+R  
Sbjct: 677 VATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGM 736

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M    + K PGCS IE NG IH+FLAG+ +HP    I   L E+  +LK  GY P+ + +
Sbjct: 737 MTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEV 796

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  V+EE+ +E  L  HSE+LAIA+GLI++ P  PIRI+KNLR+C DCHT AKLISK + 
Sbjct: 797 LLDVDEEE-KESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFC 855

Query: 631 REILLRDRYRFHHFRGG 647
           R+I++RDR+RFHHF  G
Sbjct: 856 RKIVVRDRHRFHHFEQG 872



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 211/464 (45%), Gaps = 79/464 (17%)

Query: 70  PYSASKLFTPCALGTFS-SLEYAREMFDQIPQPNLYTWNTLI----RAYSSSAEPIQSFM 124
           P SAS L    A    S S+     +  + PQ N  TW        RAY  +  P  +F 
Sbjct: 142 PSSASGLLKLMAPSRKSRSVNKGFLLLMRYPQAN--TWKMPAKASRRAYIQTNSPHFAFT 199

Query: 125 IFLQLVYNSPYF-PNEFTFPFVIKAAA-RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
           ++  ++ N  Y   + +T+P +I+A + R  ++   Q +H  V+K  F+ D+++ N+LI+
Sbjct: 200 LYKSMLSN--YLGADNYTYPLLIQACSIRRSEWEAKQ-VHNHVLKLGFDSDVYVRNTLIN 256

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM--------- 233
            +++C ++  A  VF      D VSWNS+++G+++ G  E+A  +Y +M           
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 234 ------------------ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
                             E ++ D VT  A++ AC ++ ++       EA+  F  +   
Sbjct: 317 IVLFGMRGLVVEACKLFDEMLEKDMVTWSALI-ACFQQNEMY-----EEAIRTFVGMH-K 369

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL-- 333
             V  DE   VS LSACA L  +++G  IH+   K G +    L  +LI MY+KCG++  
Sbjct: 370 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 429

Query: 334 -----------------------------DKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
                                        D A  +F ++  +DV  WS+MI+G+A     
Sbjct: 430 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            E L LF  MQ +  KP+  T  +V+ AC+    +++G+     ++   G+   V   T 
Sbjct: 490 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR-NGLTINVILGTT 548

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           ++DM  + G ++ A+E    M I  G S W AL+    ++  VE
Sbjct: 549 LIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 591


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 351/605 (58%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  + ++H ++L+TG    P +  +L   CA    +SL YAR +FD I  P+ + +NT+I
Sbjct: 1   MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           RA++ S+      +     +      P+ FTFPFV+KA ARL   + G  +H ++ K  F
Sbjct: 61  RAHADSSPSFSLSLFSKMTMAGVS--PDHFTFPFVLKACARL---QTGLDLHSLLFKLGF 115

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + D+++ N LIHFY  CG L  A   F  + ++D+VSW+SMI+ F + GF          
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGF---------- 165

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                            EAL++F  +QL   V PDE   +SV+S
Sbjct: 166 -------------------------------GYEALALFQRMQLVGTVKPDEVIVLSVVS 194

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + LG +++G  I   + + G++    L T+L+DM+++CG +++++ VF  +  R+V  
Sbjct: 195 AISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLT 254

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I G A++G   EAL +F  M+    +P+ VTFT VL ACSH GLV EG   F  + 
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR 314

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY CMVD+LGRAGLL+EA +F++ MPI P + +W  LLGAC  H  +ELA
Sbjct: 315 NEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + EL+  + G  VLLSN+Y   G+W   + +R  MR   + K+PGCS I VN  
Sbjct: 375 EKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHL 434

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH+F+AG+++HP  + I   L  ++  LK  GY P+ S++L  +EEE+ +E  L  HSE+
Sbjct: 435 IHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEE-KESTLGYHSEK 493

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ L+  + S+ IR++KNLR+C DCH   K  S ++ REI++RDR RFHHF  G+CS
Sbjct: 494 LAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCS 553

Query: 651 CMDYW 655
           C DYW
Sbjct: 554 CRDYW 558



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 116/237 (48%), Gaps = 8/237 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C  ++    +H+ + + G   D Y  + L      G    L++A + F+++P+ +L
Sbjct: 93  VLKACARLQTGLDLHSLLFKLGFDSDVYVQNGLIH--FYGCCGFLDFALKAFEEMPERDL 150

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +W+++I  ++ +    ++  +F ++       P+E     V+ A + L    +G+ I G
Sbjct: 151 VSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRG 210

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            + ++  E  + +  +L+  ++ CG +  +  VF  +G+++V++W ++I+G    G   +
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           A+ ++ EM     +PD VT   VL AC+       G   +E   +F  ++    + P
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSH------GGLVSEGWHVFESIRNEYGMEP 321


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/616 (37%), Positives = 357/616 (57%), Gaps = 50/616 (8%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           +L+K+C   K L Q   +H  ++++    D    + L    A     SLE AR++FD++P
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYA--KCGSLEEARKVFDKMP 113

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + +  TW TLI  YS    P  + ++F Q++    + PNEFT   VIKAAA   +   G 
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQML-RFGFSPNEFTLSSVIKAAAAERRGCCGH 172

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG  +K  F+ ++ + ++L+  Y   G +  A  VF  +  ++ VSWN++I+G  +  
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             EKA+EL++ M                                          L +   
Sbjct: 233 GTEKALELFQGM------------------------------------------LREGFR 250

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P  F++ S+  AC+  G ++ G  +HA M K G KL  +   +L+DMY K G++  A ++
Sbjct: 251 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 310

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  RDV  W++++  +A +G G EA+  F  M+   ++PN ++F +VL ACSHSGL+
Sbjct: 311 FDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLL 370

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DEG  ++  M+   G+V    HY  +VD+LGRAG L+ A+ FIE+MPI P A++W ALL 
Sbjct: 371 DEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 429

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H+N EL  YA  H+ EL+P++ G  V+L NIYA  G+W++ + +RK M+ SG+KKE
Sbjct: 430 ACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 489

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P CS +E+   IH F+A +  HP  +EI  K +E++A++K  GYVP+ SH++  V++++ 
Sbjct: 490 PACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE- 548

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSE++A+A+ L++  P   I I KN+RVCGDCH+  KL SK   REI++RD  
Sbjct: 549 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTN 608

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC DYW
Sbjct: 609 RFHHFKDGACSCKDYW 624



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 44/258 (17%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D   + ++L  C     +  G  +H  + +   + +  +  +L++MY KCG+L++A +VF
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-------- 392
             +  RD   W+T+I+G++ +    +AL LF++M      PN  T ++V+ A        
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 393 CSHS---------------------------GLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           C H                            GL+D+ ++ F+ +E    V      +  +
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNAL 224

Query: 426 VDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLEL-E 481
           +    R    ++A+E  + M      P    + +L GAC     +E  ++  +++++  E
Sbjct: 225 IAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 284

Query: 482 PENHGALVLLSNIYAKTG 499
                A   L ++YAK+G
Sbjct: 285 KLVAFAGNTLLDMYAKSG 302


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 341/568 (60%), Gaps = 14/568 (2%)

Query: 88   LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
            L+ A+++F ++P  N  +W  +I  +  + E  ++  + ++L + S   P++ +F   + 
Sbjct: 505  LKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIEL-HRSGSVPSDSSFTSALS 563

Query: 148  AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
            A A +    +G+ IH + IK+  + + ++ N LI  YA CG++     VF  I  KD VS
Sbjct: 564  ACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS 623

Query: 208  WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            WNS+ISG  +    + A  ++ +M     K D V+  A++SA  +    E       AL 
Sbjct: 624  WNSLISGLSENYMLDDARVVFEKMP----KRDVVSWTAIISAYVQAGHGEV------ALD 673

Query: 268  IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
            +F ++ L++ + P++ T  S+LSAC  LGA+ +G Q HA + K G     ++  SLI MY
Sbjct: 674  LFLDM-LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY 732

Query: 328  TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
             KCG  D    VF  +   D+  W+ ++ G A  G G+EA+ +F +M+   + P+ ++F 
Sbjct: 733  FKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFL 791

Query: 388  NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
             VLCACSH+GLVDEG   FN M   YG++P V HYTCMVD+LGRAG L EA   IE MP+
Sbjct: 792  GVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPV 851

Query: 448  VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
             P + +W ALLGAC+IH NVEL +     L ++        VLLSN++A  G WD V+E+
Sbjct: 852  KPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEI 911

Query: 508  RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
            RK M+  GL KEPG S I+V  ++H F+ G+ +H   +EIYS L E     ++ GY+P+ 
Sbjct: 912  RKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDT 971

Query: 568  SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
            + +L  VEEE  Q + L  HSE+LA+ +G++S     PI+I+KNLR+CGDCHT  K +SK
Sbjct: 972  NFVLHDVEEEQKQNELL-YHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSK 1030

Query: 628  LYNREILLRDRYRFHHFRGGNCSCMDYW 655
            +  R+I++RD  RFHHFR G+CSC DYW
Sbjct: 1031 VTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 227/459 (49%), Gaps = 45/459 (9%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           LG    +E AR +F+++ Q ++ +WN++I  YS + +  ++ ++F   V       N  T
Sbjct: 181 LGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK-----NIRT 235

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +  ++   A+  + R+ +A    V +S  E ++   N++I  Y   GDL  A  +F  + 
Sbjct: 236 WTILLTGYAK--EGRIEEARE--VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP 291

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           +K+V SWNS+++G+       +A EL+ +M   N     V+ + ++S      D     W
Sbjct: 292 EKNVASWNSVVTGYCHCYRMSEARELFDQMPERN----SVSWMVMISGYVHISDY----W 343

Query: 262 PNEALSIFHELQLSKNV-NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
             EA  +F  +++ + V  PD+  FV VLSA   L  +++   +     K G + +  + 
Sbjct: 344 --EAWDVF--VKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG 399

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEAK 378
           +++++ YT+ G+LD A+  F T+  R+ + W+TMIA FA   CGR  +A+ L+ R+ E  
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ--CGRLDDAIQLYERVPEQT 457

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           V     T T ++ A +  G + + R+ F+++     + P V  +  ++    + G+L EA
Sbjct: 458 V----ATKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEA 508

Query: 439 VEFIEKMPIVPGASVWGALL-GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
            +  +KMP+   AS W A++ G  +  E+ E  E      L +E    G++   S+  + 
Sbjct: 509 KDLFQKMPVKNSAS-WAAMIAGFVQNEESREALE------LLIELHRSGSVPSDSSFTSA 561

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGC--SSIEVNGEIHKF 534
                N+ ++     +  L  + GC  +S  +NG I  +
Sbjct: 562 LSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMY 600



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 26/283 (9%)

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K + +  LF  N+ I      G +  A  VF  + ++DVVSWNSMI+G+ Q G  ++A  
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+     +N++    T   +L+  AK+  +E      EA  +F  +   +NV     ++ 
Sbjct: 224 LFDAFVGKNIR----TWTILLTGYAKEGRIE------EAREVFESMT-ERNV----VSWN 268

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +++S   Q G +    ++  +M ++    N     S++  Y  C  + +A E+F  +  R
Sbjct: 269 AMISGYVQNGDLKNARKLFDEMPEK----NVASWNSVVTGYCHCYRMSEARELFDQMPER 324

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           +   W  MI+G+       EA D+F +M     +P+   F  VL A   +GL D      
Sbjct: 325 NSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGLDD--LELI 380

Query: 407 NQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             + P+    G    V   + +++   R G LD A+ F E MP
Sbjct: 381 GSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP 423


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/647 (35%), Positives = 365/647 (56%), Gaps = 55/647 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           KQ+H++++  G   D +  + L    A       E   ++FD++ + N  TWN++I A +
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYA--KCDDEESCLKVFDEMGERNQVTWNSIISAEA 252

Query: 115 SSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                  + ++FL++  +     P++FTF  ++   A       G+ IH  +I+++   +
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + +   L+H Y+ CG L  A  +F  + +++  SWNSMI G+ Q G  ++A+ L+++M++
Sbjct: 313 IIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL 372

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             +KPD  ++ ++LS+C    D + GR         H   +   +  +    V ++   A
Sbjct: 373 NGIKPDCFSLSSMLSSCVSLSDSQKGRE-------LHNFIVRNTMEEEGILQVVLVDMYA 425

Query: 294 QLGAMDIGVQIHAKMKKQ-----------------GIKLNCY------------------ 318
           + G+MD   +++ +  K+                 G+K   +                  
Sbjct: 426 KCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTM 485

Query: 319 --------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
                   L T+L+DMY+KCG + KA  VF  +  +++  W+ MI+G++ +GC +EAL L
Sbjct: 486 VTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALIL 545

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           +  M +  + PN VTF  +L ACSH+GLV+EG   F  M+  Y +    +HYTCMVD+LG
Sbjct: 546 YEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLG 605

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG L++A EF+EKMPI P  S WGALLGAC++H+++++   A   L EL+P+N G  V+
Sbjct: 606 RAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVI 665

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           +SNIYA  G+W  V ++R+ M++ G+KK+PG S IE+N EI  F AG  +HP  +EIY+ 
Sbjct: 666 MSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNN 725

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL--HSERLAIAYGLISVEPSQPIRI 608
           L  +  + K  GY+P+ S +LQ V++   +E+   L  HSERLA++ GLIS+     IR+
Sbjct: 726 LRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRV 785

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLR+CGDCHT  K ISK+  R I+ RD  RFHHF  G CSC DYW
Sbjct: 786 FKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 225/468 (48%), Gaps = 54/468 (11%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL 76
           P  P PT++        +P P  SLI+ C    + ++ K IHTQM+  G   D Y  +K+
Sbjct: 53  PDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKI 112

Query: 77  FTPCAL-GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
               A  G    L YAR++F+++P+ NL  WNT+I AY+   + ++++ IF +++     
Sbjct: 113 LMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRML-KIGV 171

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ FTF   ++    L     G+ +H  +I   F+ D F+ N+LI  YA C D      
Sbjct: 172 CPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLK 231

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME--MENVKPDEVTMVAVLSACAKK 253
           VF  +G+++ V+WNS+IS   Q G F  A+ L+  M+   + ++PD+ T   +L+ CA +
Sbjct: 232 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQ 291

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
           R+   GR                                          QIHA + +  I
Sbjct: 292 RNDNQGR------------------------------------------QIHAHLIRANI 309

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
             N  + T L+ MY++CG L+ A E+F+ +  R+ + W++MI G+   G  +EAL LF +
Sbjct: 310 TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ 369

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           MQ   +KP+  + +++L +C       +GR   N +        G+     +VDM  + G
Sbjct: 370 MQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ-VVLVDMYAKCG 428

Query: 434 LLDEAVE-FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
            +D A + + + +      ++W ++L     + N  L + + +H LE+
Sbjct: 429 SMDYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLEM 473


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/606 (38%), Positives = 362/606 (59%), Gaps = 41/606 (6%)

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A E+FD++   ++ +WN++I  Y S+    +   I+ Q++Y      +  T   V+  
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A      +G+A+H + IKSSFE  +  SN+L+  Y+ CGDL  A  VF  +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE---- 264
            SMI+G+ + G  + AI+L ++ME E VK D V + ++L ACA+   L+ G+  ++    
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 265 -------------------------ALSIFHELQLSK---------NVNPDEFTFVSVLS 290
                                    A S+F  + +            + PD  T   VL 
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLP 440

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA L A++ G +IH  + + G   + ++  +L+D+Y KCG L  A  +F  + S+D+  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MIAG+ M+G G EA+  F+ M++A ++P+ V+F ++L ACSHSGL+++G  FF  M+
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+L R G L +A EF+E +PI P A++WGALL  C+ + ++ELA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + ELEPEN G  VLL+NIYA+  KW+ V  LR+ +   GL+K PGCS IE+ G+
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 531 IHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++ F++G  SSHP  K I S L ++  ++K  G+ P   + L +  +E  +E AL  HSE
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYAL-INADEMQKEMALCGHSE 739

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL+++ P + IR+ KNLRVCGDCH +AK +SK   REI+LRD  RFHHF+ G C
Sbjct: 740 KLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYC 799

Query: 650 SCMDYW 655
           SC  +W
Sbjct: 800 SCRGFW 805



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 179/374 (47%), Gaps = 28/374 (7%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T+  V++  A L  F  G+ +H ++  +S   D  +   L+ FYA CGDL     VF  +
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYR---EMEMENVKP-------DEVTMVAVLSAC 250
            KK+V  WN M+S + + G F+++I L++   E  +E  +P       D++    V+S  
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +              L I+ ++ +   ++ D  T +SVL  CA  G + +G  +H+   K
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM-MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
              +     + +L+DMY+KCG+LD AL VF  +  R+V  W++MIAG+   G    A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-----MFFNQMEPVYGVVPGVKHYTCM 425
             +M++  VK + V  T++L AC+ SG +D G+     +  N ME    V         +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC------NAL 393

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK-IHENVELAEYACSHLLELE--P 482
           +DM  + G ++ A      M +V     W  ++G  K     +     AC+ L  LE   
Sbjct: 394 MDMYAKCGSMEAANSVFSTM-VVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGK 452

Query: 483 ENHGALVLLSNIYA 496
           E HG   +L N Y+
Sbjct: 453 EIHG--YILRNGYS 464



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 57/316 (18%)

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYSS 115
           QM + G+  D  + + +   CA     SL+  +++ D I     + NL+  N L+  Y+ 
Sbjct: 342 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399

Query: 116 -----SAEPIQSFMIFLQLV-YNS---PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
                +A  + S M+   ++ +N+      P+  T   V+ A A L     G+ IHG ++
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL 459

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +  D  ++N+L+  Y  CG L +A  +F MI  KD+VSW  MI+G+   G+  +AI 
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + EM    ++PDEV+ +++L AC+    LE G W       F+ ++   N+ P      
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-W-----RFFYIMKNDFNIEP------ 567

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-S 345
                                      KL  Y    ++D+ ++ GNL KA E   T+  +
Sbjct: 568 ---------------------------KLEHY--ACMVDLLSRTGNLSKAYEFMETLPIA 598

Query: 346 RDVFVWSTMIAGFAMY 361
            D  +W  ++ G   Y
Sbjct: 599 PDATIWGALLCGCRNY 614


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/620 (39%), Positives = 348/620 (56%), Gaps = 83/620 (13%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPN 102
           LI     + QL QIH Q+    LF +    ++L +  C+L    SL+YA  +F     PN
Sbjct: 46  LIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSL---KSLDYALSIFRCFDHPN 102

Query: 103 LYTWNTLIRAYSSSAE---PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           L+ +N LIR  + ++     +  F++ L+L       P+  T PFV+K+ A LV   +G+
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR----PDRLTLPFVLKSVAALVDVGLGR 158

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD----VVSWNSMISGF 215
            +HG V+K   E D F+  SL+  Y   G+L     +F    +++    ++ WN      
Sbjct: 159 CLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN------ 212

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
                               V+P+++T+V+ L AC K                       
Sbjct: 213 -------------------GVRPNDLTVVSALLACTK----------------------- 230

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                              +GA+ +G +IH  +   G +LN  + T+L+DMY KCGN+  
Sbjct: 231 -------------------IGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKS 271

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF   K +D+  WS MI G+A++GC  +AL  F +M+ A + P+ V F  +L ACSH
Sbjct: 272 ASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSH 331

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SG VD+G  FF  M   Y + P +KHYT +VD+LGRAG LDEA+ FI+ MPI P   +WG
Sbjct: 332 SGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWG 391

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           AL  AC+ H+N+E+AE     LL+LEP++ G+ V LSN+YA  G+W++V  +R  M+  G
Sbjct: 392 ALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRG 451

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           ++K+PG S IEV G++H F+AG+ +H   +EI  KL+EI A  K  GY+P  + +L  +E
Sbjct: 452 VEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIE 511

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE+ +E AL  HSE+LA+A+GLIS  P   IRIVKNLRVCGDCH++ K  SKL  REI+L
Sbjct: 512 EEE-KEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIIL 570

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC DYW
Sbjct: 571 RDIKRFHHFKDGTCSCGDYW 590


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/694 (37%), Positives = 380/694 (54%), Gaps = 94/694 (13%)

Query: 8   HMETLSTPVISLPRH---PNPTTLTVNNGHQHHPHPVF---------------SLIKQCK 49
           H    ++  + L RH    N  TL+    H H   P+                +++ +C 
Sbjct: 195 HQGCFNSKSMFLTRHVFPSNSRTLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNECV 254

Query: 50  NIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNL 103
           N +  ++   +H  M++T      +  ++L   +T C      SL  A  +FD++P+ N+
Sbjct: 255 NKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKC-----DSLGDAHNVFDEMPERNV 309

Query: 104 YTWNTLIRAYSSSAEPIQSFMIF-------LQLVY----------NSPYF---PNEFTFP 143
            +W  +I AYS      Q+  +F       L  VY          N P+    PNEFTF 
Sbjct: 310 VSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFA 369

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            V+ +    + F +G+ IH ++IK ++ED +F+ +SL+  YA  G +  A  VF  + ++
Sbjct: 370 TVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPER 429

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           DVVS  ++ISG+ Q G  E                                         
Sbjct: 430 DVVSCTAIISGYAQLGLDE----------------------------------------- 448

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL +F  LQ  + +  +  T+  VL+A + L A+D+G Q+H  + +  I     L  SL
Sbjct: 449 EALELFRRLQ-GEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSL 507

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPN 382
           IDMY+KCGNL  +  +F T+  R V  W+ M+ G++ +G GRE L LF+ M +E KVKP+
Sbjct: 508 IDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPD 567

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +VT   VL  CSH GL D+G   FN M      V P ++HY C+VD+LGR+G ++EA EF
Sbjct: 568 SVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEF 627

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+KMP  P A++WG+LLGAC++H NV++ E+A   LLE+EP N G  V+LSN+YA  G+W
Sbjct: 628 IKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRW 687

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++VS LR  M    + KEPG SSIE++  +H F A + SHP  +EI  K+ E+    K  
Sbjct: 688 EDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEV 747

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP+ S +L  V+EE  +E+ L  HSE+LA+++GLI+   S PIR++KNLR+C DCH  
Sbjct: 748 GYVPDLSCVLHDVDEEQ-KEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNF 806

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           AK ISK+Y RE+ LRD+ RFH   GG CSC DYW
Sbjct: 807 AKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 357/578 (61%), Gaps = 18/578 (3%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
            L     L+ AR +  + P  N+ TW  LI  YS +    ++   F  ++ +    P+E 
Sbjct: 180 GLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDG-IAPDEV 238

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMV--IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           T   ++ A  +L     G ++H +V   +    D L ++  LI  YA CGD   A  VF 
Sbjct: 239 TVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVA--LIDMYAKCGDTGRAREVFD 296

Query: 199 MIGK-KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
            +G+ +    WN+MI G+ + G  + A  L+ +ME  +V    +T  ++++       + 
Sbjct: 297 ALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDV----ITFNSLITGY-----IH 347

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
            GR   EAL +F +++    +  D FT V +L+A A LGA+  G  +HA ++++ ++ + 
Sbjct: 348 GGRL-REALLLFTKMR-RHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDV 405

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           YL T+L+DMY KCG +++A+  F  +  RDV  WS MI G A  G G+ AL+ F  M+  
Sbjct: 406 YLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCD 465

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
               N+VT+  VL ACSHS L+DEGR++F++M  ++ + P ++HY CM+D+LGR+GLLDE
Sbjct: 466 GFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDE 525

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A++ ++ MP+ P A +W ++L AC++H+NV+LA+ A  HLL+LEP      V + NIY  
Sbjct: 526 AMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYID 585

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           + +W++ S++R+ M   G+KK  G SSI V G++HKF+ G+ SHP   EI   ++EI  R
Sbjct: 586 SRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRR 645

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           LKS GY P  S +   V+EE+ +EQAL  HSE+LAIA+GL+S+ P+ P+ I+KNLRVC D
Sbjct: 646 LKSAGYSPITSQITVDVDEEE-KEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCED 704

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH+  KLIS+L+NREI++RDR RFHHFRGG CSC D+W
Sbjct: 705 CHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 208/450 (46%), Gaps = 54/450 (12%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS----LEYAREMFDQIPQPNLYT 105
           +++Q  ++H  +  +G    P SA+ L          S    L YA  +FD++P  + + 
Sbjct: 11  SVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMP-CSTFL 69

Query: 106 WNTLIRA-YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL-VQFRVGQAIHG 163
           ++T +RA + +S+ P +  +++ ++ +     P+ FTF F+ K  AR      +G+ +H 
Sbjct: 70  FDTALRACFRASSGPDRPIILYRRM-HGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHA 128

Query: 164 MVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              ++     +  I++ +IH YA  G    A   F     KDVV+W ++ISG  + G  +
Sbjct: 129 ACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLD 188

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A  L     + NV    VT   ++S  ++      GR   EA+  F+ + LS  + PDE
Sbjct: 189 DARRLLARAPVRNV----VTWTGLISGYSRA-----GR-AAEAVDCFNSM-LSDGIAPDE 237

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T + +LSAC QL  ++ G  +H  +  + + ++  L  +LIDMY KCG+  +A EVF  
Sbjct: 238 VTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDA 297

Query: 343 V--------------------------------KSRDVFVWSTMIAGFAMYGCGREALDL 370
           +                                +  DV  ++++I G+   G  REAL L
Sbjct: 298 LGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLL 357

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F++M+   +  +  T   +L A +  G + +GR     +E    V   V   T ++DM  
Sbjct: 358 FTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRL-VERDVYLGTALLDMYM 416

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           + G ++EA+   ++M  V     W A++G 
Sbjct: 417 KCGRVEEAMVAFKQMS-VRDVHTWSAMIGG 445



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 45/314 (14%)

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKK-RDLEFGRWPNEALSIFHELQLSKNVNP 280
           ++ I LYR M   +V PD  T   +   CA+    +  GR  + A          + + P
Sbjct: 85  DRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACF--------RTLLP 136

Query: 281 DEFTFVS--VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                ++  ++   A+LG   +         +  +K +    T++I    K G LD A  
Sbjct: 137 SAVPLIASPIIHMYAELG---LPGDARRAFDEASVK-DVVAWTTVISGLAKMGLLDDARR 192

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA------ 392
           +      R+V  W+ +I+G++  G   EA+D F+ M    + P+ VT   +L A      
Sbjct: 193 LLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKD 252

Query: 393 ----CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
               CS   LV + RM  +            K    ++DM  + G    A E  + +   
Sbjct: 253 LNFGCSLHMLVGDKRMLMSD-----------KLVVALIDMYAKCGDTGRAREVFDALGRG 301

Query: 449 PGASVWGALL-GACKIHENVELAEYACSHLLELEPENHGALVLLSNI--YAKTGKWDNVS 505
            G   W A++ G CK+  +V++A      +     E+H  +   S I  Y   G+     
Sbjct: 302 RGPQPWNAMIDGYCKV-GHVDIARSLFDQM-----EDHDVITFNSLITGYIHGGRLREAL 355

Query: 506 ELRKHMRVSGLKKE 519
            L   MR  GL  +
Sbjct: 356 LLFTKMRRHGLGAD 369


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/618 (38%), Positives = 363/618 (58%), Gaps = 24/618 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           LI   K+   L QIH  +LR GL   P    KL    A  +   L ++  +F + P PN+
Sbjct: 29  LIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYA--SLGHLHHSVTLFHRTPNPNV 86

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
           + W  +I A++       +   + Q++ + P  PN FT   ++KA          +A+H 
Sbjct: 87  FLWTHIINAHAHFDLFHHALSYYSQMLTH-PIQPNAFTLSSLLKACT----LHPARAVHS 141

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
             IK      L++S  L+  YA  GD+A A  +F  + ++ +VS+ +M++ + + G   +
Sbjct: 142 HAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPE 201

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK------N 277
           A  L+  M M++V    V    ++   A+         PNEAL  F ++ +         
Sbjct: 202 ARVLFEGMGMKDV----VCWNVMIDGYAQHG------CPNEALVFFRKMMMMMGGNGNGK 251

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V P+E T V+VLS+C Q+GA++ G  +H+ ++  GIK+N  + T+L+DMY KCG+L+ A 
Sbjct: 252 VRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDAR 311

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  ++ +DV  W++MI G+ ++G   EAL LF  M    VKP+ +TF  VL AC+H+G
Sbjct: 312 KVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAG 371

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV +G   F+ M+  YG+ P V+HY CMV++LGRAG + EA + +  M + P   +WG L
Sbjct: 372 LVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTL 431

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+IH NV L E     L+     + G  VLLSN+YA    W  V+++R  M+ SG++
Sbjct: 432 LWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVE 491

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPGCSSIEV   +H+F+AG+  HP  K+IYS L+++   LK   Y P    +L  + E+
Sbjct: 492 KEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQ 551

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +EQ+L +HSE+LA+A+GLIS  P   I+IVKNLRVC DCH V K++SK+  R+I++RD
Sbjct: 552 E-KEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRD 610

Query: 638 RYRFHHFRGGNCSCMDYW 655
           R RFHHF  G+CSC DYW
Sbjct: 611 RNRFHHFENGSCSCRDYW 628


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/571 (40%), Positives = 336/571 (58%), Gaps = 49/571 (8%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F+ L  A ++FDQ+PQ N+ +W T+I AYS   +  Q  +  L L+      PN +T+  
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLVLMLRDNVRPNVYTYSS 167

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+++   +   R+   +H  +IK   E D+F+ ++LI  +A  G+   A  VF  +   D
Sbjct: 168 VLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGD 224

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            + WNS+I GF Q    + A+EL++ M+      ++ T+                     
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT-------------------- 264

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                 SVL AC  L  +++G+Q H  + K    L   L  +L+
Sbjct: 265 ----------------------SVLRACTGLALLELGMQAHVHIVKYDQDL--ILNNALV 300

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ AL VF+ +K RDV  WSTMI+G A  G  +EAL LF RM+ +  KPN +
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYI 360

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GL+++G  +F  M+ +YG+ P  +HY CM+D+LG+AG LD+AV+ + +
Sbjct: 361 TIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNE 420

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P A  W  LLGAC++  N+ LAEYA   ++ L+PE+ G   LLSNIYA + KWD+V
Sbjct: 421 MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSV 480

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
            E+R  MR  G+KKEPGCS IEVN +IH F+ G++SHP   E+  KL++++ RL   GYV
Sbjct: 481 EEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYV 540

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P  + +LQ +E E + E +L  HSE+LA+A+GL+++   + IRI KNLR+CGDCH   KL
Sbjct: 541 PETNFVLQDLEGEQM-EDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            SKL  R I++RD  R+HHF+ G CSC DYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/663 (35%), Positives = 376/663 (56%), Gaps = 21/663 (3%)

Query: 3   DNPPQHMETLSTPVIS------LPRHPNPTTLTVN-NGHQHHPHPVFSLIKQCK---NIK 52
           DN PQ   T  + +IS      LP        ++   G + H     ++ K C    +  
Sbjct: 90  DNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDAS 149

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           ++K++H   +R G+  D +  + L    A G    +E AR +FD +   ++ +W ++   
Sbjct: 150 RVKEVHDDAIRCGMMSDAFLGNALIH--AYGKCKCVEGARRVFDDLVVKDVVSWTSMSSC 207

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y +   P     +F ++ +N    PN  T   ++ A + L   + G+AIHG  ++    +
Sbjct: 208 YVNCGLPRLGLAVFCEMGWNGVK-PNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE 266

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           ++F+ ++L+  YA C  +  A  VF ++  +DVVSWN +++ +     ++K + L+ +M 
Sbjct: 267 NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMS 326

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            + V+ DE T  AV+  C +    E      +A+ +  ++Q +    P++ T  S L AC
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTE------KAVEMLRKMQ-NLGFKPNQITISSFLPAC 379

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           + L ++ +G ++H  + +  +  +    T+L+ MY KCG+L+ +  VF  +  +DV  W+
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWN 439

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           TMI   AM+G GRE L LF  M ++ +KPN+VTFT VL  CSHS LV+EG   FN M   
Sbjct: 440 TMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRD 499

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           + V P   HY CMVD+  RAG L EA EFI++MP+ P AS WGALLGAC++++NVELA+ 
Sbjct: 500 HLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKI 559

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           + + L E+EP N G  V L NI      W   SE R  M+  G+ K PGCS ++V   +H
Sbjct: 560 SANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVH 619

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F+ G+ ++    +IY+ LDE+  ++KS GY P+  ++LQ +++E+ + ++L  HSE+LA
Sbjct: 620 TFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEE-KAESLCSHSEKLA 678

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           +A+G++++     IR+ KNLR+CGDCH   K +SK+    I++RD  RFHHFR GNCSC 
Sbjct: 679 VAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQ 738

Query: 653 DYW 655
           D W
Sbjct: 739 DLW 741



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 43/320 (13%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A+++FD IPQP+  T +TLI A+++   P ++  ++  L       P+   F  V KA  
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARG-IKPHNSVFLTVAKACG 143

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                   + +H   I+     D F+ N+LIH Y  C  +  A  VF  +  KDVVSW S
Sbjct: 144 ASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTS 203

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M S +V  G     + ++ EM    VKP+ VT+ ++L AC++ +DL+ GR          
Sbjct: 204 MSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGR---------- 253

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                                            IH    + G+  N ++ ++L+ +Y +C
Sbjct: 254 --------------------------------AIHGFAVRHGMIENVFVCSALVSLYARC 281

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
            ++ +A  VF  +  RDV  W+ ++  +       + L LFS+M    V+ +  T+  V+
Sbjct: 282 LSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVI 341

Query: 391 CACSHSGLVDEGRMFFNQME 410
             C  +G  ++      +M+
Sbjct: 342 GGCMENGQTEKAVEMLRKMQ 361



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L   L+      G+  +A ++F  +   D    ST+I+ F   G   EA+ L++ ++  
Sbjct: 67  HLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRAR 126

Query: 378 KVKPNAVTFTNVLCACSHSG 397
            +KP+   F  V  AC  SG
Sbjct: 127 GIKPHNSVFLTVAKACGASG 146


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 365/621 (58%), Gaps = 57/621 (9%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++ +C     I++ +++H  M++T      Y  ++L   +  C       L  AR + D
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC-----RCLGDARRVLD 69

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P+ N+ +W  +I  YS      ++  +F++++  S   PNEFTF  V+ +      F+
Sbjct: 70  EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLTSCTSSSGFQ 128

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ IH +VIK+SFE  +F+ +SL+  YA  G +  A  VF  + ++DVVS  ++ISG+ 
Sbjct: 129 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 188

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL +F  LQ  +
Sbjct: 189 QLGLDE-----------------------------------------EALDLFRRLQ-RE 206

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            +  +  T+ SVL+A + L A+D G Q+H+ + +  +     L  SLIDMY+KCG+L  +
Sbjct: 207 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH 395
             +F ++  R V  W+ M+ G++ +G GREA++LF  M+E  KVKP++VTF  VL  CSH
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326

Query: 396 SGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            G+ D G  +F+  +    G  P ++HY C+VD+ GRAG ++EA EFI+KMP  P A++W
Sbjct: 327 GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 386

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LLGAC++H+NV + E+    LLE+E EN G  V+LSN+YA  G+WD+V  +R+ M+  
Sbjct: 387 GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 446

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            + KEPG S IE++  +H F A + SHP  +E+++K+ E+  ++K  GYVP  S +L  V
Sbjct: 447 AVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDV 506

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           ++E  +E+ L  HSE+LA+A+GLI      P+RI+KNLR+C DCH  AK +S++Y RE+ 
Sbjct: 507 DDEQ-KEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVS 565

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD+ RFHH  GG CSC DYW
Sbjct: 566 LRDKNRFHHIVGGTCSCGDYW 586


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/649 (37%), Positives = 365/649 (56%), Gaps = 29/649 (4%)

Query: 7   QHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL 66
            H  ++ +PV      P P + T      +      SL++ CK+  Q+  I+ +++R   
Sbjct: 2   NHSSSMLSPVAGCSALP-PNSGTKPKNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHH 60

Query: 67  FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF 126
             DP+   +L   C+    +S+ YA ++F     PN+Y +  LI     S        ++
Sbjct: 61  HQDPFVVFELLRVCS--NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLY 118

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
            Q++ NS   P+ +    V+KA    +  + G+ +H  V+K     +  I   LI  Y  
Sbjct: 119 YQMI-NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGK 177

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG    A  VF  + ++DVV+   MI+ +   G                   D V   A+
Sbjct: 178 CGAFEDARRVFDEMPERDVVASTVMINYYFDHGI-----------------KDTVCWTAM 220

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           +    +  +       N AL +F  +Q  ++V P+E T V VLSAC++LGA+ +G  + +
Sbjct: 221 IDGLVRNGE------SNRALEVFRNMQ-REDVMPNEVTIVCVLSACSELGALQLGRWVRS 273

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            M K  I+LN ++  +LI+MY++CG++D+A  VF  +K ++V  +++MI GFA++G   E
Sbjct: 274 YMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVE 333

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           A++LF  + +    P++VTF  VL ACSH GL + G   F+ M   YG+ P ++HY CMV
Sbjct: 334 AVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMV 393

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+LGR G L+EA  FI  M + P   + GALL ACKIH N+ELAE     L+  +  + G
Sbjct: 394 DLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSG 453

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             +LLSN Y+ +GKW   +E+R +MR  G++KEPGCSSIEVN EIH+FL G+  HP  ++
Sbjct: 454 TYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEK 513

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           IY KL+E+   L+  GY P    +L  +E+ + +E AL +HSERLAI YGLIS +P   +
Sbjct: 514 IYKKLEELNQILRLEGYTPATEVVLHDIEKSE-KEWALAIHSERLAICYGLISTKPLTTL 572

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           R+VKNLRVC DCH   KLIS +  R+I++RDR RFHHF  G CSC DYW
Sbjct: 573 RVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 362/606 (59%), Gaps = 41/606 (6%)

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A E+FD++   ++ +WN++I  Y S+    +   I+ Q++Y      +  T   V+  
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV-DLATIISVLVG 260

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A      +G+A+H + IKSSFE  +  SN+L+  Y+ CGDL  A  VF  +G+++VVSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE---- 264
            SMI+G+ + G+ + AI L ++ME E VK D V + ++L ACA+   L+ G+  ++    
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 265 -------------------------ALSIFHEL---------QLSKNVNPDEFTFVSVLS 290
                                    A S+F  +          +   + PD  T   +L 
Sbjct: 381 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILP 440

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA L A++ G +IH  + + G   + ++  +L+D+Y KCG L  A  +F  + S+D+  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MIAG+ M+G G EA+  F+ M++A ++P+ V+F ++L ACSHSGL+++G  FF  M+
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P ++HY CMVD+L R G L +A +FIE +PI P A++WGALL  C+I+ ++ELA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     + ELEPEN G  VLL+NIYA+  K + V  +R+ +   GL+K PGCS IE+ G 
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGR 680

Query: 531 IHKFLAG-ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++ F++G  SSHP  K+I S L ++  ++K  GY P   + L +  +E  +E AL  HSE
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL-INADEMQKEMALCGHSE 739

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL+++ P + IR+ KNLRVCGDCH +AK +SK   REI+LRD  RFHHF+ G C
Sbjct: 740 KLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYC 799

Query: 650 SCMDYW 655
           SC  +W
Sbjct: 800 SCRGFW 805



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 177/369 (47%), Gaps = 18/369 (4%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T+  V++  A L     G+ +H ++  +S   D  +   L+ FYA CGDL     VF  +
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYR---EMEMENVKP-------DEVTMVAVLSAC 250
            KK+V  WN M+S + + G F+++I L++   E  +E  +P       D++    V+S  
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +              L I+ ++ +   ++ D  T +SVL  CA  G + +G  +H+   K
Sbjct: 221 SMISGYVSNGLTERGLGIYKQM-MYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
              +     + +L+DMY+KCG+LD AL VF  +  R+V  W++MIAG+   G    A+ L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             +M++  VK + V  T++L AC+ SG +D G+   + ++    +   +     ++DM  
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK-ANNMASNLFVCNALMDMYA 398

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY-ACSHLLELE--PENHGA 487
           + G ++ A      M +V     W  ++G  K           AC+ L  LE   E HG 
Sbjct: 399 KCGSMEGANSVFSTM-VVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHG- 456

Query: 488 LVLLSNIYA 496
             +L N Y+
Sbjct: 457 -YILRNGYS 464



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 142/316 (44%), Gaps = 57/316 (18%)

Query: 60  QMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ----PNLYTWNTLIRAYSS 115
           QM + G+  D  + + +   CA     SL+  +++ D I       NL+  N L+  Y+ 
Sbjct: 342 QMEKEGVKLDVVAITSILHACARS--GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399

Query: 116 -----SAEPIQSFMIFLQLV-YNS---PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
                 A  + S M+   ++ +N+      P+  T   ++ A A L     G+ IHG ++
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYIL 459

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +  D  ++N+L+  Y  CG L +A  +F MI  KD+VSW  MI+G+   G+  +AI 
Sbjct: 460 RNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIA 519

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            + EM    ++PDEV+ +++L AC+    LE G W       F+ ++   N+ P      
Sbjct: 520 TFNEMRDAGIEPDEVSFISILYACSHSGLLEQG-W-----RFFYIMKNDFNIEP------ 567

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-S 345
                                      KL  Y    ++D+ ++ GNL KA +   T+  +
Sbjct: 568 ---------------------------KLEHY--ACMVDLLSRTGNLSKAYKFIETLPIA 598

Query: 346 RDVFVWSTMIAGFAMY 361
            D  +W  ++ G  +Y
Sbjct: 599 PDATIWGALLCGCRIY 614


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 371/674 (55%), Gaps = 77/674 (11%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP-QPNLYTWN 107
           K +K  K  H ++LR  L  D    S +     +   ++ +Y   +F + P   N + +N
Sbjct: 15  KCLKHAKLAHCRLLRLNLHHDNDLLSIILRS-TINFSNNAQYPILVFHKTPTNSNTFLYN 73

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           T+IR   S      +  ++  + + +   P+ FTF FV+KA ARL  F +G  IH +V K
Sbjct: 74  TMIRGMVSKDRFNNAVHLYASM-HKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFK 132

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F+ D+F+  +++ FY+ CG L  A+ VF  +  K+VVSW  MI G ++ G F +A++L
Sbjct: 133 TGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDL 192

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           +R +    ++PD   +V VL ACA+  DLE GRW +  +    E  LS+NV    F   S
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCM---RECGLSRNV----FVATS 245

Query: 288 VLSACAQLGAM-------------DI------------------GVQIHAKMKKQGIKLN 316
           ++    + G+M             DI                   +++  +M+K  ++ +
Sbjct: 246 LVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPD 305

Query: 317 CY-----------------------------------LTTSLIDMYTKCGNLDKALEVFH 341
           CY                                   L TSLID Y KCG++++AL V+ 
Sbjct: 306 CYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYK 365

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K +D  V++ +I+G AMYG    A  +F +M +  + PN  TF  +LC C+H+GLVD+
Sbjct: 366 MMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDD 425

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR +FN M   + V P ++HY CMVD+L RAG LDEA   I+ MP+     VWG+LLG C
Sbjct: 426 GRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGC 485

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H   +LAE+    L+ELEP N G  VLLSNIY+ + +WD   ++R  +   G++K PG
Sbjct: 486 RLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPG 545

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S +EV+G +H+FL G++SHPL ++IY KL+ +   LK  GY P    +L  VEEE+ +E
Sbjct: 546 YSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEE-KE 604

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
             L  HSE+LA+A+ LIS      IR+VKNLRVCGDCH   K ISK+  REI++RD  RF
Sbjct: 605 HFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRF 664

Query: 642 HHFRGGNCSCMDYW 655
           H F  G CSC DYW
Sbjct: 665 HCFSDGACSCRDYW 678


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/524 (41%), Positives = 331/524 (63%), Gaps = 47/524 (8%)

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC----GDLA 191
            PN+FT+PFV+KA A +    +G+++HG V+K  F D++ + N+L+H Y  C    G + 
Sbjct: 7   LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  VF  + K D VSW++MI     GG+                               
Sbjct: 67  FARKVFDEMYKSDSVSWSAMI-----GGY------------------------------- 90

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
               +  GR  ++A+++F E+Q+ K V PDE T VSVLSAC  LGA+++G  + + ++K+
Sbjct: 91  ----VRVGR-SSDAINLFREMQI-KGVCPDEITMVSVLSACTGLGALELGKWVESYVEKE 144

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
            ++ N  L+ +LIDM+ KCG++DKA  +F +++ R++  W+++I G AM+G G EA+ +F
Sbjct: 145 RVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVF 204

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
             M  + V P+ V F  +L ACSHSGLVD+G+ +F+ M   + +VP ++HY CMVDML R
Sbjct: 205 EEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCR 264

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491
           AGL+ EA++F+++MPI P   VW  L+ AC+ H  ++L E     L+  EP +    VLL
Sbjct: 265 AGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLL 324

Query: 492 SNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKL 551
           SNIYAK   W+  + +R+ M + G+KK PG + IE++ EI++F+AG+ SH   KEIY  +
Sbjct: 325 SNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMV 384

Query: 552 DEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           DE+   +K  GY+P  + +L  +++ED +E  LN HSE+LAIA+ L++  P   IRIVKN
Sbjct: 385 DEMGKEMKRAGYMPTTTEVLLDIDDED-KEDTLNRHSEKLAIAFALLNTPPGTLIRIVKN 443

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LRVC DCH+ +K ISK+YNREI++RDR RFHHF+ G CSC D+W
Sbjct: 444 LRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTP---CALGTFSSLEYAREMFDQ 97
           ++K C  I  L   K +H  +++ G F D  +          C  G    +E+AR++FD+
Sbjct: 16  VLKACAGIGNLNLGKSVHGSVMKFG-FGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDE 74

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + +  +W+ +I  Y        +  +F ++       P+E T   V+ A   L    +
Sbjct: 75  MYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKG-VCPDEITMVSVLSACTGLGALEL 133

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +   V K   + ++ +SN+LI  +A CGD+  A  +F  + ++++VSW S+I G   
Sbjct: 134 GKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAM 193

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            G   +A+ ++ EM    V PD+V  + +LSAC+
Sbjct: 194 HGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACS 227


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/645 (37%), Positives = 367/645 (56%), Gaps = 59/645 (9%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYS 72
           ST  ++L  +P   T         H H    L K   N   + Q+ +QM+   +  D  +
Sbjct: 28  STSALTLCENPPQIT------ESKHSH----LTKSISNHAHMNQMLSQMIMNYIPIDHLN 77

Query: 73  ASKL--FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
             KL  F+  + G  +S     + +  I        N++IR Y+ S + + S  I+ Q+ 
Sbjct: 78  LMKLIDFSVSSHGFAASALLFTQFYGFIDSD---LCNSMIRCYTDSNKHLHSVFIYTQM- 133

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
           + +  FP+  TFP V+K+ A+L +  +G+AIH  +I+  FE ++++S +L++ Y  C  +
Sbjct: 134 WKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSV 193

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           + A  VF  I  +++VSWN++I+G+     F K I+                        
Sbjct: 194 SDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID------------------------ 229

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                            +F E+Q++    P E T V VL ACA LGA++ G  I   +  
Sbjct: 230 -----------------VFREMQIA-GAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDH 271

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
             ++LN ++ T+LIDMY KCG +D+A ++F  ++ ++V+ W+ +I+G+AM G G  AL  
Sbjct: 272 NRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQA 331

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           FSRM   K KP+ VTF  VLCAC H GLV+EGR +F  M+  +G+ P ++HY CMVD+LG
Sbjct: 332 FSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLG 391

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG LDEA + I+ M + P   +W  LLGAC+IH N++L E+A   LLELEP N    VL
Sbjct: 392 RAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVL 451

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           L+N+YA+  +WD V E+R+ M    ++K PGCSSIE++  +++F+      P  +E+Y  
Sbjct: 452 LANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKL 511

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           L ++  +LK  GYV +       +EEE+ +E +L  HSE+LA+A+GL+       +RIVK
Sbjct: 512 LADMNKKLKLAGYVADTGMASYDIEEEE-KEHSLMYHSEKLALAFGLLKSPSGLTLRIVK 570

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLR+C DCH   K++SK+Y R+I +RDR RFHHF GG CSC DYW
Sbjct: 571 NLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/615 (38%), Positives = 359/615 (58%), Gaps = 18/615 (2%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+  C   ++  ++H  +LRTGL      A       A      L+ +  +  +   P 
Sbjct: 294 SLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPT 353

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
              + + I A+SS    + +  +   ++      P   T    + A   L     G+A+H
Sbjct: 354 AIFYTSAIHAHSSRGHRLPALALLSDMLAQG-LLPTAHTLSASLPACRGLSP---GRALH 409

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNSMISGFVQGGFF 221
           G   K +   D +++ +L+  YA  GD   A  +F  M+    VVS  +M++ +   G  
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           + A  L+  +  +    D V   A++         + GR PNEAL +F  + L   V PD
Sbjct: 470 DDARSLFDGLPTK----DFVCWNAMIDGYT-----QHGR-PNEALRLFRRM-LGSGVEPD 518

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           E T V VLSA AQLG ++ G  +H+ +K  + ++L+  + T+LIDMY KCG+L  A++VF
Sbjct: 519 EVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVF 578

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
           H +  +D+ VW+ MI G+AM+G  R+AL++F + +E  + P  +TF  +L ACSHSG+V+
Sbjct: 579 HGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVE 638

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EGR FF  ME  YG+ P ++HY CMVD+LGRAGL+ EA   ++ M I P A +W +LL A
Sbjct: 639 EGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAA 698

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C++H+N+ L +    +L+     N G  +LLSNIYA  G W  V+ +R  M+ SG++KEP
Sbjct: 699 CRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEP 758

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCSSIE++ E+++F+AG+ SHP   EIY  LD++   +K  G+VP    +L  ++E   +
Sbjct: 759 GCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEA-TK 817

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E+AL +HSE+LA+A+GLIS +P   I+IVKNLR C DCH V KLIS++  R+I+ RDR R
Sbjct: 818 EKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNR 877

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF  G+CSC DYW
Sbjct: 878 FHHFVDGSCSCGDYW 892


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 365/621 (58%), Gaps = 57/621 (9%)

Query: 43   SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
            S++ +C     I++ +++H  M++T      Y  ++L   +  C       L  AR + D
Sbjct: 482  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC-----RCLGDARRVLD 536

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            ++P+ N+ +W  +I  YS      ++  +F++++  S   PNEFTF  V+ +      F+
Sbjct: 537  EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLTSCTSSSGFQ 595

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            +G+ IH +VIK+SFE  +F+ +SL+  YA  G +  A  VF  + ++DVVS  ++ISG+ 
Sbjct: 596  LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 655

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
            Q G  E                                         EAL +F  LQ  +
Sbjct: 656  QLGLDE-----------------------------------------EALDLFRRLQ-RE 673

Query: 277  NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
             +  +  T+ SVL+A + L A+D G Q+H+ + +  +     L  SLIDMY+KCG+L  +
Sbjct: 674  GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733

Query: 337  LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH 395
              +F ++  R V  W+ M+ G++ +G GREA++LF  M+E  KVKP++VTF  VL  CSH
Sbjct: 734  RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793

Query: 396  SGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             G+ D G  +F+  +    G  P ++HY C+VD+ GRAG ++EA EFI+KMP  P A++W
Sbjct: 794  GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 853

Query: 455  GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            G+LLGAC++H+NV + E+    LLE+E EN G  V+LSN+YA  G+WD+V  +R+ M+  
Sbjct: 854  GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 913

Query: 515  GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
             + KEPG S IE++  +H F A + SHP  +E+++K+ E+  ++K  GYVP  S +L  V
Sbjct: 914  AVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDV 973

Query: 575  EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            ++E  +E+ L  HSE+LA+A+GLI      P+RI+KNLR+C DCH  AK +S++Y RE+ 
Sbjct: 974  DDEQ-KEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVS 1032

Query: 635  LRDRYRFHHFRGGNCSCMDYW 655
            LRD+ RFHH  GG CSC DYW
Sbjct: 1033 LRDKNRFHHIVGGTCSCGDYW 1053


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/668 (36%), Positives = 366/668 (54%), Gaps = 71/668 (10%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           +K  K +H+++L  G   D    +   K++  C      S +  R++F+++   +L  WN
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG-----SYKDCRQVFEKLVNRDLIAWN 297

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           T+I   +      ++  ++ Q+       PN+ T+  ++ A         G+ IH  V K
Sbjct: 298 TMIGGLAEGGYWEEASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F  D+ + N+LI  Y+ CG +  A  VF  + +KDV+SW +MI G  + GF  +A+ +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 228 YREMEMENVKPDEV--------------------------------------TMVAVLSA 249
           Y+EM+   V+P+ V                                      T+V + S 
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSM 476

Query: 250 CAKKRDLE--FGRW--------------------PNEALSIFHELQLSKNVNPDEFTFVS 287
           C   +D    F R                       EAL +F  LQ  + + PD+ T+++
Sbjct: 477 CGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ-EEGLKPDKVTYIN 535

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L+ACA  G+++   +IH  ++K G   +  +  +L+  Y KCG+   A  VF  +  R+
Sbjct: 536 MLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRN 595

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+ +I G A +G G++AL LF RM+   VKP+ VTF ++L ACSH+GL++EGR +F 
Sbjct: 596 VISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFC 655

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M   + ++P ++HY CMVD+LGRAG LDEA   I+ MP      +WGALLGAC+IH NV
Sbjct: 656 SMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNV 715

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            +AE A    L+L+ +N    V LS++YA  G WD+ ++LRK M   G+ KEPG S I+V
Sbjct: 716 PVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQV 775

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
             ++H F+A + SHP  ++IY++LD +   +K  GYVP+   ++  V+E + +E A+  H
Sbjct: 776 GDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGE-KENAVCHH 834

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SERLAIAYGLIS  P   I I KNLRVC DCHT  K ISK+ +REI+ RD  RFHHF+ G
Sbjct: 835 SERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDG 894

Query: 648 NCSCMDYW 655
            CSC DYW
Sbjct: 895 VCSCGDYW 902



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 231/500 (46%), Gaps = 77/500 (15%)

Query: 34  HQHHPHP----VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALG 83
            QH   P    + S +  CK+   L   ++IH Q ++ GL FD   A+    ++  C   
Sbjct: 118 QQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCG-- 175

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
              S+E ARE+FD++ + ++ +W   I  Y+       +F IF Q +      PN  T+ 
Sbjct: 176 ---SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIF-QKMEQEGVVPNRITYI 231

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            V+ A +     + G+A+H  ++ +  E D  +  +L+  YA CG       VF  +  +
Sbjct: 232 SVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR 291

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR--- 260
           D+++WN+MI G  +GG++E+A E+Y +M+ E V P+++T V +L+AC     L +G+   
Sbjct: 292 DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIH 351

Query: 261 -------------WPNEALSIFH--------ELQLSKNVNPDEFTFVSVL---------- 289
                          N  +S++          L   K V  D  ++ +++          
Sbjct: 352 SRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGA 411

Query: 290 -------------------------SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                    +AC+   A++ G +IH ++ + G+  + ++  +L+
Sbjct: 412 EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLV 471

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           +MY+ CG++  A +VF  +  RD+  ++ MI G+A +  G+EAL LF R+QE  +KP+ V
Sbjct: 472 NMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 531

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+ N+L AC++SG ++  R     +    G          +V    + G   +A    EK
Sbjct: 532 TYINMLNACANSGSLEWAREIHTLVRK-GGFFSDTSVGNALVSTYAKCGSFSDASIVFEK 590

Query: 445 MPIVPGASVWGALLGACKIH 464
           M      S W A++G    H
Sbjct: 591 MTKRNVIS-WNAIIGGSAQH 609



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 169/389 (43%), Gaps = 73/389 (18%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           N   +  ++K    +     G+ +H  +I+     D +  N+LI+ Y  CG +  A  V+
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81

Query: 198 VMIG--KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
             +   ++ V SWN+M+ G++Q G+ EKA++L R+M+   + PD  T+++ LS+C     
Sbjct: 82  KKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGA 141

Query: 256 LEFGRWPN-----------------------------EALSIFHELQLSKNVNPDEFTFV 286
           LE+GR  +                             EA  +F +++    V     ++ 
Sbjct: 142 LEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV-----SWT 196

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGI---------KLNCY------------------- 318
             +   A  G  +   +I  KM+++G+          LN +                   
Sbjct: 197 ITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNA 256

Query: 319 -------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                  + T+L+ MY KCG+     +VF  + +RD+  W+TMI G A  G   EA +++
Sbjct: 257 GHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVY 316

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
           ++MQ   V PN +T+  +L AC +S  +  G+   +++    G    +     ++ M  R
Sbjct: 317 NQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSR 375

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            G + +A    +KM +      W A++G 
Sbjct: 376 CGSIKDARLVFDKM-VRKDVISWTAMIGG 403


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/619 (39%), Positives = 366/619 (59%), Gaps = 57/619 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI- 98
           ++IK C NIK++   KQ+H Q+++ G  FD    + L    A    S ++ A ++F  + 
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV--AYSKCSEIDDAFKLFCMMH 356

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              N+ +W  +I  Y  +    ++  +F Q+       PN FT+  ++ A A +      
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQM-RREGVRPNHFTYSTILTANAAVSP---- 411

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             IH +V+K+++E+   +  +L   Y+  GD   A  +F +I +KD+V+W++M+SG+ Q 
Sbjct: 412 SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQM 471

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK-N 277
           G  E                                          A+ IF  LQL+K  
Sbjct: 472 GDIEG-----------------------------------------AVKIF--LQLAKEG 488

Query: 278 VNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           V P+EFTF SVL+ACA    +++ G Q H+   K G      ++++L+ MY K GN++ A
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 548

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            EVF     RD+  W++MI+G+A +GCG+++L +F  M+   ++ + +TF  V+ AC+H+
Sbjct: 549 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+ +F+ M   Y +VP ++HY+CMVD+  RAG+L++A++ I KMP   GA++W  
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC++H NV+L E A   L+ L+P++  A VLLSNIYA  G W   +++RK M +  +
Sbjct: 669 LLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKV 728

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKE G S IEV  +   F+AG+ SHP    IY KL+E+  RLK  GY P+  ++L  VEE
Sbjct: 729 KKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEE 788

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E  +E  L+ HSERLAIA+GLI+  P  PI+IVKNLRVCGDCHTV KLISK+  R+I++R
Sbjct: 789 EH-KEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVR 847

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+GG+CSC DYW
Sbjct: 848 DSNRFHHFKGGSCSCGDYW 866



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 205/455 (45%), Gaps = 77/455 (16%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           KQ+H Q ++ G F +  S         + T  S+E    +FD++   N+ +W +L+  Y 
Sbjct: 112 KQVHCQCIKCG-FVEDVSVGTSLVDMYMKT-ESVEDGERVFDEMRVKNVVSWTSLLAGYR 169

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    Q+  +F Q+       PN FTF  V+   A       G  +H MVIKS  +  +
Sbjct: 170 QNGLNEQALKLFSQMQLEGIK-PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTI 228

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ NS+++ Y+    ++ A  VF  +  ++ VSWNSMI+GFV  G   +A EL+  M +E
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRW-----------------------------PNEA 265
            VK  +     V+  CA  +++ F +                               ++A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY------- 318
             +F  +   +NV     ++ +++S   Q G  D  + +  +M+++G++ N +       
Sbjct: 349 FKLFCMMHGVQNV----VSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 319 ------------------------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
                                   + T+L D Y+K G+ ++A ++F  +  +D+  WS M
Sbjct: 405 ANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAM 464

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH-SGLVDEGRMFFNQMEPVY 413
           ++G+A  G    A+ +F ++ +  V+PN  TF++VL AC+  +  V++G+ F +      
Sbjct: 465 LSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS-----C 519

Query: 414 GVVPGVKHYTC----MVDMLGRAGLLDEAVEFIEK 444
            +  G  +  C    +V M  + G ++ A E  ++
Sbjct: 520 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR 554



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 161/349 (46%), Gaps = 50/349 (14%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE---YAREMFDQIPQPNLYTWN 107
           ++QL +   Q   T     PY    +F P    + S L    +++++FD+ PQ  L   N
Sbjct: 4   VRQLGRSKRQKRFTQSLSGPYDV--VFNPKTSLSSSKLSTLSHSQQLFDETPQQGLSRNN 61

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
            L+  +S + +  ++  +FL L  + SP   +  +   V+K    L    VG+ +H   I
Sbjct: 62  HLLFEFSRNDQNKEALNLFLGLRRSGSP--TDGSSLSCVLKVCGCLFDRIVGKQVHCQCI 119

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K  F +D+ +  SL+  Y     +     VF  +  K+VVSW S+++G+ Q G  E+A++
Sbjct: 120 KCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALK 179

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ +M++E +KP+  T  AVL   A                                   
Sbjct: 180 LFSQMQLEGIKPNPFTFAAVLGGLAAD--------------------------------- 206

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
                    GA++ GVQ+H  + K G+    ++  S+++MY+K   +  A  VF ++++R
Sbjct: 207 ---------GAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR 257

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +   W++MIAGF   G   EA +LF RM+   VK     F  V+  C++
Sbjct: 258 NAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 4/213 (1%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           H  +S I          QIH  +++T     P   + L    +         A ++F+ I
Sbjct: 396 HFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSD--SYSKIGDANEAAKIFELI 453

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRV 157
            + ++  W+ ++  Y+   +   +  IFLQL       PNEFTF  V+ A AA       
Sbjct: 454 DEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE-PNEFTFSSVLNACAAPTASVEQ 512

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+  H   IKS F + L +S++L+  YA  G++  A  VF     +D+VSWNSMISG+ Q
Sbjct: 513 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 572

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            G  +K+++++ EM  +N++ D +T + V+SAC
Sbjct: 573 HGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 605



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 256 LEFGR--WPNEALSIFHELQLSKNVNPDEFTFVS-VLSACAQLGAMDIGVQIHAKMKKQG 312
            EF R     EAL++F  L L ++ +P + + +S VL  C  L    +G Q+H +  K G
Sbjct: 65  FEFSRNDQNKEALNLF--LGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCG 122

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
              +  + TSL+DMY K  +++    VF  ++ ++V  W++++AG+   G   +AL LFS
Sbjct: 123 FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFS 182

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           +MQ   +KPN  TF  VL   +  G V++G +  + M    G+   +     MV+M  ++
Sbjct: 183 QMQLEGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIKSGLDSTIFVGNSMVNMYSKS 241

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
            ++ +A    + M      S W +++ A  +   ++L  +   + + LE
Sbjct: 242 LMVSDAKAVFDSMENRNAVS-WNSMI-AGFVTNGLDLEAFELFYRMRLE 288


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 359/612 (58%), Gaps = 53/612 (8%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           Q KN++  ++IH  +  +    D +   S   ++  C      S+  AR +FDQ+ + ++
Sbjct: 63  QSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC-----RSVLDARNVFDQMRRKDM 117

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +W +LI  Y+ +  P+++  +   ++    + PN FTF  ++KAA        G+ IH 
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGML-KGRFKPNGFTFASLLKAAGAYADSGTGRQIHA 176

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           + +K  + +D+++ ++L+  YA CG + MA  VF  +  K+ VSWN++ISGF        
Sbjct: 177 LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF-------- 228

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
                                      A+K D E       AL  F E+ L        F
Sbjct: 229 ---------------------------ARKGDGE------SALMTFAEM-LRNGFEATHF 254

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T+ SV S+ A+LGA++ G  +HA + K   KL  ++  +L+DMY K G++  A +VF  V
Sbjct: 255 TYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRV 314

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            ++D+  W++M+  FA YG G+EA+  F  M+++ V  N +TF  +L ACSH GLV EG+
Sbjct: 315 DNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGK 374

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +F  M+  Y + P + HY  +V +LGRAGLL+ A+ FI KMP+ P A+VWGALL AC++
Sbjct: 375 RYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H+N ++ ++A  H+ EL+P++ G  VLL NIYA TG+WD  + +R  M+ +G+KKEP CS
Sbjct: 434 HKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACS 493

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            +E+   +H F+A + +HP  +EIY    EI  +++  GYVP+  ++L  V++++ +E  
Sbjct: 494 WVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQE-KEAN 552

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L  HSE+LA+A+ LI +     IRI+KN+R+CGDCH+  K ISK++ REI++RD  RFHH
Sbjct: 553 LQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHH 612

Query: 644 FRGGNCSCMDYW 655
           F  G+CSC DYW
Sbjct: 613 FSSGSCSCGDYW 624



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P    + S ++ACAQ   ++   +IHA +       + +L  SLI MY KC ++  A  V
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ +D+  W+++IAG+A      EA+ L   M + + KPN  TF ++L A       
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             GR   + +    G    V   + ++DM  R G +D A    +K+    G S W AL+
Sbjct: 169 GTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALI 225


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/620 (36%), Positives = 362/620 (58%), Gaps = 53/620 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMF 95
           H   +   Q KN++  +++H  +  +    D +   S   L+  C     S LE AR++F
Sbjct: 55  HTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG----SVLE-ARKVF 109

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++ + ++ +W +LI  Y+ +  P ++  +   ++    + PN FTF  ++KAA      
Sbjct: 110 DEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGML-KGRFKPNGFTFASLLKAAGAHADS 168

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G+ IH + +K  + +D+++ ++L+  YA CG + MA  VF  +  K+ VSWN++ISGF
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
                                              A+K D E       AL  F E+ L 
Sbjct: 229 -----------------------------------ARKGDGE------TALMTFAEM-LR 246

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                  FT+ SV S+ A+LGA++ G  +HA M K   K+  +   +L+DMY K G++  
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMID 306

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  V  +D+  W+TM+  FA YG G+EA+  F  M+++ +  N VTF  +L ACSH
Sbjct: 307 ARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSH 366

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV EG+ +F  M+  Y + P + H+  +V +LGRAGLL+ A+ FI KMPI P A+VWG
Sbjct: 367 GGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWG 425

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL AC++H+N ++ ++A  H+ EL+P++ G  VLL NIYA TG+WD  + +R+ M+ +G
Sbjct: 426 ALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTG 485

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KKEP CS +E+   +H F+A + +HP  +EIY    +I  +++  GYVP+  ++L  V+
Sbjct: 486 VKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVD 545

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +++ +E  L  HSE+LA+A+ LI +     IRI+KN+R+CGDCH+  K ISK++ REI++
Sbjct: 546 DQE-REANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVV 604

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G+CSC DYW
Sbjct: 605 RDTNRFHHFSNGSCSCADYW 624


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 353/616 (57%), Gaps = 50/616 (8%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SL++ C   K I+  KQ+H ++ + G+ F+P  A+KL     +   +SL  A  +FD+I 
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCI--CNSLTNAHLLFDRIS 63

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + NL+ WN +IR Y+ +     +  ++ Q+  +    P++FTFPFV+KA + L     G+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQM-RDYGLVPDKFTFPFVLKACSALSAMEEGK 122

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  VI+S  E D+F+  +LI  YA CG +  A  VF  I ++DVV WNSM++ + Q G
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNG 182

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             ++++ L R M    +K                                          
Sbjct: 183 QPDESLALCRVMAFNGLK------------------------------------------ 200

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P E TFV  ++A A  G +  G ++H    + G + N  + T+L+DMY K G+++ A  +
Sbjct: 201 PTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSL 260

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ + V  W+ MI G+AM+G   EALDLF  M+  KV P+ +TF  VL ACSH GL+
Sbjct: 261 FELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPDHITFVGVLAACSHGGLL 319

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+M F  M   + + P V+HYTCM+D+LG  G L+EA + I +M + P A VWGALL 
Sbjct: 320 NEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLH 379

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +CKIH NVE+ E A   L+ELEP++ G  V+LSN+YA+ GKWD V+ LR  M   GLKK 
Sbjct: 380 SCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKS 439

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
             CS IEV  ++H FL+ ++SHP  + IY++L      +K  GY P    +   V E+D 
Sbjct: 440 IACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDV-EDDE 498

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +   ++ HSERLAIA+GLIS      + I+KNLR+C DCH   K ISK+  REI +RD  
Sbjct: 499 KVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVN 558

Query: 640 RFHHFRGGNCSCMDYW 655
           R+HHF+ G CSC D+W
Sbjct: 559 RYHHFKDGVCSCGDFW 574



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + S+L +C    A++ G Q+HA++ + GI  N  L T L+++Y  C +L  A  +F  + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            R++F+W+ MI G+A  G    A+ L+ +M++  + P+  TF  VL ACS    ++EG+ 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
               +    G+   V     ++DM  + G ++ A +  +K+
Sbjct: 124 IHKDV-IRSGLESDVFVGAALIDMYAKCGCVESARQVFDKI 163


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 343/576 (59%), Gaps = 46/576 (7%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G    LE A+ +F  +   +L TWN++I       +   +  +F Q +  S   P+  T 
Sbjct: 215 GKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMF-QGMRGSGVSPDVLTL 273

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
             +  A A+    R  +++H  V++  ++ DD+   N+++  YA   ++  A  +F  + 
Sbjct: 274 VSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP 333

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +D VSWN++I+G++Q G                                          
Sbjct: 334 VQDSVSWNTLITGYMQNGL----------------------------------------- 352

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            NEA+  +  +Q  + +   + TFVSVL A + LGA+  G+++HA   K G+ ++ Y+ T
Sbjct: 353 ANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGT 412

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            LID+Y KCG L +A+ +F  +  R    W+ +I+G  ++G G EAL LFSRMQ+  +KP
Sbjct: 413 CLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKP 472

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + VTF ++L ACSH+GLVD+GR FF+ M+  Y +VP  KHY CM DMLGRAG LDEA  F
Sbjct: 473 DHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNF 532

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+ MPI P ++VWGALLGAC+IH NVE+ + A  +L EL+PEN G  VL+SN+YAK GKW
Sbjct: 533 IQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKW 592

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS--HPLCKEIYSKLDEIVARLK 559
           D V E+R  +R   L+K PG SSIEV   ++ F +G  +  HP  +EI ++L  ++A+++
Sbjct: 593 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIR 652

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           S GYV + S +LQ V E+D +E  LN HSERLAIA+G+I+     P+ I KNLRVCGDCH
Sbjct: 653 SVGYVSDYSFVLQDV-EDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCH 711

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              K IS++  REI++RD  RFHHF+ G+CSC D+W
Sbjct: 712 NATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 192/423 (45%), Gaps = 72/423 (17%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAA---ARLVQFRVGQAIH 162
           NTLI A+S +A P  +F +   ++  + P+ P+ FTFP +I+AA   A   Q        
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQLHACALRL 96

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           G+V  S     +F S SL+H Y   G ++ AY VF  + ++DV +WN+M+SG  +     
Sbjct: 97  GLVRPS-----VFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAA 151

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSAC---------------AKKRDLE---------- 257
           +A+ L+  M  E V  D VT+ +VL  C               A K  L+          
Sbjct: 152 EAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALI 211

Query: 258 --FGRWP--NEALSIFHELQL------------------------------SKNVNPDEF 283
             +G+     EA  +FH ++                                  V+PD  
Sbjct: 212 DVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVL 271

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEVFHT 342
           T VS+ SA AQ G       +H  + ++G  ++  +   +++DMY K  N++ A  +F +
Sbjct: 272 TLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDS 331

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDE 401
           +  +D   W+T+I G+   G   EA++ +  MQ+ + +K    TF +VL A SH G + +
Sbjct: 332 MPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G M  + +    G+   V   TC++D+  + G L EA+   EKMP       W A++   
Sbjct: 392 G-MRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGL 449

Query: 462 KIH 464
            +H
Sbjct: 450 GVH 452



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 150/338 (44%), Gaps = 40/338 (11%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S I Q  + +  K +H  ++R G   D   A            S++E A+ MFD +P  +
Sbjct: 278 SAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVD-MYAKLSNIEAAQRMFDSMPVQD 336

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             +WNTLI  Y  +    ++   +  +  +      + TF  V+ A + L   + G  +H
Sbjct: 337 SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMH 396

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            + IK     D+++   LI  YA CG LA A  +F  + ++    WN++ISG    G   
Sbjct: 397 ALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGA 456

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL---------- 272
           +A+ L+  M+ E +KPD VT V++L+AC+    ++ GR   + + + +++          
Sbjct: 457 EALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACM 516

Query: 273 --------QLSKNVN--------PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--- 313
                   QL +  N        PD   + ++L AC   G +++G     K+  Q +   
Sbjct: 517 ADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMG-----KVASQNLFEL 571

Query: 314 ---KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
               +  Y+  S  +MY K G  D   EV   V+ +++
Sbjct: 572 DPENVGYYVLMS--NMYAKVGKWDGVDEVRSLVRRQNL 607


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 352/617 (57%), Gaps = 53/617 (8%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           ++K C ++  LK   ++H  +   GL  D    + L      G   S+  AR +FD +  
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLR--MYGKCGSINEARRIFDNLMN 192

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ +W  +I AY+ S    +++ + LQ+     + PN  T+  ++ A A     +  + 
Sbjct: 193 HDIISWTVMIGAYAQSGNGKEAYRLMLQM-EQEGFKPNAITYVSILNACASEGALKWVKR 251

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   + +  E D+ +  +L+  YA  G +  A  VF  +  +DVVSWN MI  F     
Sbjct: 252 VHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFA---- 307

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
                                               E GR  +EA  +F ++Q ++   P
Sbjct: 308 ------------------------------------EHGR-GHEAYDLFLQMQ-TEGCKP 329

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D   F+S+L+ACA  GA++   +IH      G++++  + T+L+ MY+K G++D A  VF
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +K R+V  W+ MI+G A +G G++AL++F RM    VKP+ VTF  VL ACSH+GLVD
Sbjct: 390 DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EGR  +  M  VYG+ P V H  CMVD+LGRAG L EA  FI+ M + P  + WGALLG+
Sbjct: 450 EGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGS 509

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C+ + NVEL E      L+L+P+N    VLLSNIYA+ GKWD VS +R  MR  G++KEP
Sbjct: 510 CRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEP 569

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G S IEV+ +IH FL  +SSHP CKEI    D+++ ++K+ GY+P+   +L+    ++++
Sbjct: 570 GRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLK---NKNMK 626

Query: 581 EQALNL--HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
           ++ L++  HSE+LAI YGL+   P  PIR+ KNLRVC DCH   KLISK+  REI++RD 
Sbjct: 627 DKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDA 686

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G CSC DYW
Sbjct: 687 NRFHHFKDGVCSCGDYW 703



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 186/408 (45%), Gaps = 61/408 (14%)

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +A  +   ++ L          + F +  V+K   +       + +H  +IKS  E +  
Sbjct: 5   TANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAH 64

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + N+L+H Y  CG L  A CVF  + KK   SWN+MI+G+V+    E A+ L+REM  E 
Sbjct: 65  VMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEG 124

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWP-----------------------------NEAL 266
           V+P+  T + +L ACA    L++G+                               NEA 
Sbjct: 125 VQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEAR 184

Query: 267 SIFHE-----------------------------LQLSK-NVNPDEFTFVSVLSACAQLG 296
            IF                               LQ+ +    P+  T+VS+L+ACA  G
Sbjct: 185 RIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           A+    ++H      G++L+  + T+L+ MY K G++D A  VF  +K RDV  W+ MI 
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIG 304

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
            FA +G G EA DLF +MQ    KP+A+ F ++L AC+ +G ++  +          G+ 
Sbjct: 305 AFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALD-SGLE 363

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             V+  T +V M  ++G +D+A    ++M +    S W A++     H
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQH 410



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 158/335 (47%), Gaps = 33/335 (9%)

Query: 43  SLIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++  C +   +K +K++H   L  GL  D    + L    A     S++ AR +FD++ 
Sbjct: 235 SILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYA--KSGSIDDARVVFDRMK 292

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +WN +I A++      +++ +FLQ+       P+   F  ++ A A        +
Sbjct: 293 VRDVVSWNVMIGAFAEHGRGHEAYDLFLQM-QTEGCKPDAIMFLSILNACASAGALEWVK 351

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH   + S  E D+ +  +L+H Y+  G +  A  VF  +  ++VVSWN+MISG  Q G
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-- 277
             + A+E++R M    VKPD VT VAVLSAC+    ++ GR    A++  + ++   +  
Sbjct: 412 LGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHC 471

Query: 278 ------------------------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                                   V+PDE T+ ++L +C   G +++G ++ AK + +  
Sbjct: 472 NCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELG-ELVAKERLKLD 530

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
             N      L ++Y + G  D    V   ++ R +
Sbjct: 531 PKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGI 565



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 15/252 (5%)

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +L + +  D F +V VL  C +   +    Q+H  + K  ++ N ++  +L+ +Y +CG 
Sbjct: 19  RLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGR 78

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L +A  VF  +  +    W+ MIAG+  +    +A+ LF  M    V+PNA T+  +L A
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA 138

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVP 449
           C+    +  G+     +    G+   V+  T ++ M G+ G ++EA    + +    I+ 
Sbjct: 139 CASLSALKWGKEVHACIRH-GGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIIS 197

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPE----NHGALVLLSNIYAKTGKWDNVS 505
               W  ++GA     N    + A   +L++E E    N    V + N  A  G    V 
Sbjct: 198 ----WTVMIGAYAQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 506 ELRKHMRVSGLK 517
            + +H   +GL+
Sbjct: 251 RVHRHALDAGLE 262


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/625 (37%), Positives = 362/625 (57%), Gaps = 27/625 (4%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFD 96
           P+   + +   + +  ++H    +     DP+  +    ++  C       + YAR +FD
Sbjct: 116 PILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCG-----RINYARNVFD 170

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++   ++ TWNT+I  Y       ++F +F ++  +S   P+E     ++ A  R    R
Sbjct: 171 EMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEM-KDSNVMPDEMILCNIVSACGRTGNMR 229

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             +AI+  +I++    D  +  +L+  YA  G + MA   F  +  +++    +M+SG+ 
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G  + A  ++ + E    K D V    ++SA  +        +P EAL +F E+  S 
Sbjct: 290 KCGRLDDAQVIFDQTE----KKDLVCWTTMISAYVE------SDYPQEALRVFEEMCCS- 338

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + PD  +  SV+SACA LG +D    +H+ +   G++    +  +LI+MY KCG LD  
Sbjct: 339 GIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDAT 398

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  R+V  WS+MI   +M+G   +AL LF+RM++  V+PN VTF  VL  CSHS
Sbjct: 399 RDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHS 458

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+  F  M   Y + P ++HY CMVD+ GRA LL EA+E IE MP+     +WG+
Sbjct: 459 GLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGS 518

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           L+ AC+IH  +EL ++A   +LELEP++ GALVL+SNIYA+  +W++V  +R+ M    +
Sbjct: 519 LMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
            KE G S I+ NG+ H+FL G+  H    EIY+KLDE+V++LK  GYVP+   +L  VEE
Sbjct: 579 FKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEE 638

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQP------IRIVKNLRVCGDCHTVAKLISKLYN 630
           E+ ++  L  HSE+LA+ +GL++ E  +       IRIVKNLRVC DCH   KL+SK+Y 
Sbjct: 639 EEKKDLVL-WHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYE 697

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFH ++ G CSC DYW
Sbjct: 698 REIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 226/452 (50%), Gaps = 39/452 (8%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP-NLYTW 106
           CK++  +KQ+H  +LRT    +    S LF      +  +L YA  +F  IP P     +
Sbjct: 22  CKSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVF 79

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N  +R  S S+EP ++ ++F Q + +     ++F+F  ++KA +++     G  +HG+  
Sbjct: 80  NPFLRDLSRSSEP-RATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAF 138

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K +   D F+    +  YA CG +  A  VF  +  +DVV+WN+MI  + + G  ++A +
Sbjct: 139 KIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ EM+  NV PDE+ +  ++SAC +  ++ + R         +E  +  +V  D     
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR-------AIYEFLIENDVRMDTHLLT 251

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           ++++  A  G MD+  +   KM  +    N +++T+++  Y+KCG LD A  +F   + +
Sbjct: 252 ALVTMYAGAGCMDMAREFFRKMSVR----NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKK 307

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D+  W+TMI+ +      +EAL +F  M  + +KP+ V+  +V+ AC++ G++D+ +   
Sbjct: 308 DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH-- 464
           + +  V G+   +     +++M  + G LD   +  EKMP     S W +++ A  +H  
Sbjct: 368 SCIH-VNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMINALSMHGE 425

Query: 465 -------------ENVELAE-------YACSH 476
                        ENVE  E       Y CSH
Sbjct: 426 ASDALSLFARMKQENVEPNEVTFVGVLYGCSH 457


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 386/678 (56%), Gaps = 74/678 (10%)

Query: 44  LIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           +I+ C+++K L+    IH  + + GL  D +  + L   +  C       +E AR +FD+
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKC-----REIEDARFLFDK 90

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + +L TW  +I  Y+   +  +S ++F ++       P++     V+ A A+L     
Sbjct: 91  MQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + I   + +  F+ D+ +  ++I  YA CG +  A  +F  + +K+V+SW++MI+ +  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA-------------------------- 251
            G   KA++L+R M    + PD++T+ ++L AC+                          
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFV 269

Query: 252 ---------KKRDLEFGRW-------------------------PNEALSIFHELQLSKN 277
                    K R++E  R+                          NE+L +F +++  + 
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMR-EEG 328

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD+   V+V+ ACA+LGAM     I   ++++  +L+  L T++IDM+ KCG ++ A 
Sbjct: 329 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 388

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           E+F  ++ ++V  WS MIA +  +G GR+ALDLF  M  + + PN +T  ++L ACSH+G
Sbjct: 389 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 448

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG  FF+ M   Y V   VKHYTC+VD+LGRAG LDEA++ IE M +     +WGA 
Sbjct: 449 LVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAF 508

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+ H++V LAE A + LLEL+P+N G  +LLSNIYA  G+W++V++ R  M    LK
Sbjct: 509 LGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 568

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG + IEV+ + H+F  G+++HP  KEIY  L  +  +L+  GYVP+ + +L  V+EE
Sbjct: 569 KIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEE 628

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            ++   L  HSE+LAIA+GLI+     PIRI+KNLRVCGDCHT  KL+S +  R I++RD
Sbjct: 629 -LKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRD 687

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 688 ANRFHHFKEGACSCGDYW 705



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 170/340 (50%), Gaps = 48/340 (14%)

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           ++  ++   + I  F  F +L+      P+ +T PFVI+A   L   ++G+ IH +V K 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGAR-PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 59

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             + D F+  +L+  Y  C ++  A  +F  + ++D+V+W  MI G+ +           
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE----------- 108

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
                                C K          NE+L +F +++  + V PD+   V+V
Sbjct: 109 ---------------------CGK---------ANESLVLFEKMR-EEGVVPDKVAMVTV 137

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           + ACA+LGAM     I   ++++  +L+  L T++IDMY KCG ++ A E+F  ++ ++V
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNV 197

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             WS MIA +  +G GR+ALDLF  M  + + P+ +T  ++L ACS    +  GR+  + 
Sbjct: 198 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH- 256

Query: 409 MEPVYGVVPGVKHYTC--MVDMLGRAGLLDEAVEFIEKMP 446
              VY     + H+ C  +VDM G+   +++A    +KMP
Sbjct: 257 --IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SL+  C ++K L+    IH  + + GL  D +  + L      G    +E AR +FD++P
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVD--MYGKCREIEDARFLFDKMP 294

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + +L TW  +I  Y+      +S ++F ++       P++     V+ A A+L      +
Sbjct: 295 ERDLVTWTVMIGGYAECGNANESLVLFDKM-REEGVVPDKVAMVTVVFACAKLGAMHKAR 353

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            I   + +  F+ D+ +  ++I  +A CG +  A  +F  + +K+V+SW++MI+ +   G
Sbjct: 354 TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 413

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              KA++L+  M    + P+++T+V++L AC+    +E      E L  F  +    +V 
Sbjct: 414 QGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE------EGLRFFSLMWEDYSVR 467

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKM---KKQGI 313
            D   +  V+    + G +D  +++   M   K +G+
Sbjct: 468 ADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 504


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/635 (37%), Positives = 363/635 (57%), Gaps = 48/635 (7%)

Query: 23  PNPTTLTVNNGH-QHHPHPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           P P +      H  H+    F S +  C+N+ Q++Q+H Q+   G F +   A+KL    
Sbjct: 36  PTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMY 95

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
                 +LE A+E+FD + + + Y+W+ ++  Y+        F +F +L+ +     +++
Sbjct: 96  V--ERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPL-DDY 152

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           + P VI+A   L   + G+ IH + +K   +   F+  +L+  YA C  +  A+ +FV +
Sbjct: 153 SAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKM 212

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            K+D+ +W  MI    + G                                         
Sbjct: 213 WKRDLATWTVMIGALAESGV---------------------------------------- 232

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
            P E+L  F  ++ ++ + PD+   V+V+ ACA+LGAM+    IHA +   G  L+  L 
Sbjct: 233 -PVESLVFFDRMR-NQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILG 290

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T++IDMY KCG+++ A  +F  ++ R+V  WS MIA +  +G G +AL+LF  M  + + 
Sbjct: 291 TAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGIL 350

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN +TF ++L ACSH+GL++EG+ FF+ M   YGV P VKHYTCMVD+LGRAG LDEA+E
Sbjct: 351 PNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALE 410

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            IE MP+     +WGALLGAC+IH +++LAE     LL+L+ +  G  VLLSNIYA  GK
Sbjct: 411 MIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGK 470

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           W+++++ R  M   GL+K PG + IEV  ++++F  G+ +HP   EIY  L  +  +L+ 
Sbjct: 471 WEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEV 530

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            GY P+ + +L  V+EE V++  L  HSE+LAIA+GL+ +    PIRI KNLRVCGDCHT
Sbjct: 531 AGYHPDTNDVLYDVDEE-VKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHT 589

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K +S +  + I++RD  RFHHF+ G CSC DYW
Sbjct: 590 FCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 364/617 (58%), Gaps = 51/617 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++++    +KQL+Q+H  ++ T         +KL T     +  ++ Y   +F  +P P+
Sbjct: 14  AIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLPD 71

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
            + +N++I++ S    P+     + +++ +S   P+ +TF  VIK+ A L   ++G+ +H
Sbjct: 72  DFLFNSVIKSTSKLRLPLHCVAYYRRML-SSNVSPSNYTFTSVIKSCADLSALKIGKGVH 130

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              + S F  D ++  +L+ FY+ CGD+  A  VF  + +K VV+WNS++SGF Q G  E
Sbjct: 131 CHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAE 190

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            AI ++ +M                      R+  F                     PD 
Sbjct: 191 DAIRVFYQM----------------------RESGF--------------------EPDS 208

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            TFVS+LSACAQ GA+ +G  +H  +  +G+ +N  L T+LI++Y++CG++ KA EVF  
Sbjct: 209 ATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDK 268

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDE 401
           +K  +V  W+ MI+ +  +G G++A+DLF++M++     PN VTF  VL AC+H+GLV++
Sbjct: 269 MKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVED 328

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS---VWGALL 458
           GR  + +M   Y ++PGV+H+ C+VDMLGRAG LDEA  FI+++     A+   +W A+L
Sbjct: 329 GRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAML 388

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GACK+H N +L       L+ LEPEN G  V+LSNIYA +GK D VS +R  M  + L+K
Sbjct: 389 GACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRK 448

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           + G S IEV  + + F  G+ SH    EIY  L+ +++R K  GY P    ++  VEEE+
Sbjct: 449 QVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEE 508

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE+LA+A+GL+    S  I +VKNLR+C DCH+  K IS + NR+I++RD+
Sbjct: 509 -KEFALRYHSEKLAVAFGLLKTVDS-AITVVKNLRICEDCHSAFKYISIVSNRQIIVRDK 566

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G+CSC+DYW
Sbjct: 567 LRFHHFQNGSCSCLDYW 583


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/531 (42%), Positives = 331/531 (62%), Gaps = 14/531 (2%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+  +   V+ A A +  +  G+A+HG+ ++S   +DLF+ N+L+  YA CG +  A  V
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--- 253
           F  I +KDVVSWN+M++G+ Q G FE A+ L+ +M  EN++ + V+  AV++A A++   
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 254 -------RDLEFGRWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
                  R+++ G   N+AL +F  + +    V P+ FT    L ACA+L A+ +G QIH
Sbjct: 131 CETLDVFREMQHGE-ANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIH 189

Query: 306 AKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           A + +        Y+   LIDMY K G++D A  VF  +K ++   W++++ G+ M+G G
Sbjct: 190 AYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRG 249

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
           +EAL++F  M+   ++P+ VT   VL ACSHSG++D+G  FFN M   +GV+PG +HY C
Sbjct: 250 KEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYAC 309

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           MVD+LGRAG L+EA+E IE M + P + VW ALL  C+IH NVEL E+A   LLEL  EN
Sbjct: 310 MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEN 369

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G+  LLSNIYA   +W +V+ +R  M+ SG++K PGCS ++       F   + +HP  
Sbjct: 370 DGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQS 429

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           K+IY  L  +  R+K  GYVP  S  L  V++E+ +   L  HSE+LA+AYG++   P  
Sbjct: 430 KQIYEILRSLTQRIKVLGYVPETSFALHDVDDEE-KVDLLFEHSEKLALAYGILISAPGA 488

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           PIRI KNLRVCGDCH     IS + + EI+LRD  RFHHF+ G+CSC  YW
Sbjct: 489 PIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 79/134 (58%)

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           ++ PD  + V+VL ACA +GA   G  +H    + G   + ++  +L+DMY KCG +D+A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +K +DV  W+ M+ G++  G   +AL LF +M+E  ++ N V+++ V+ A +  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 397 GLVDEGRMFFNQME 410
           GL  E    F +M+
Sbjct: 128 GLGCETLDVFREMQ 141


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 340/612 (55%), Gaps = 56/612 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLF------------TPCALGTFSSLEYAREMFDQIPQPNL 103
            +H   LR+G F D ++A+ L             +P   G+   LE  R++FD++P+ ++
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +WNTL+   + S    ++  +  ++ +     P+ FT   V+   A     R G  +HG
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREM-WRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
              ++ F DD+F+ +SLI  YA C     +  VF  +  +D + WNSM++G  Q G  + 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVD- 256

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
                                                   EAL +F  + L   + P   
Sbjct: 257 ----------------------------------------EALGLFRRM-LHSGIKPMPV 275

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           TF S++ AC  L ++ +G Q+HA + + G   N ++++SLIDMY KCGN+  A  +F  +
Sbjct: 276 TFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRI 335

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           +S D+  W+ MI G A++G  REAL LF RM+   +KPN +TF  VL ACSH+GLVD+G 
Sbjct: 336 QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGW 395

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +FN M   YG+VP ++H+  + D LGR G L+EA  FI  M I P ASVW  LL ACK+
Sbjct: 396 KYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKV 455

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H+N  LAE     + +LEP + G+ ++LSN Y+ +G+W+  + LRK MR  G++KEP CS
Sbjct: 456 HKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACS 515

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            IEV  + H F+A + SHP  + I   L+    ++   GYVPN   + Q +EEE  +   
Sbjct: 516 WIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQ-KNSV 574

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L  HSE+LAI +G+IS  P   IR++KNLRVC DCHTV K ISK+  REI++RD  RFHH
Sbjct: 575 LCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHH 634

Query: 644 FRGGNCSCMDYW 655
           F+ G CSC D+W
Sbjct: 635 FKDGICSCGDFW 646



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           V  +  +  ++++  ++H    R G   D +  S L    A  T +  +Y+ ++FD +P 
Sbjct: 179 VLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRT--DYSVKVFDNLPV 236

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            +   WN+++   + +    ++  +F ++++ S   P   TF  +I A   L    +G+ 
Sbjct: 237 RDAILWNSMLAGCAQNGSVDEALGLFRRMLH-SGIKPMPVTFSSLIPACGNLASLLLGKQ 295

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  VI+  F+ ++FIS+SLI  Y  CG++++A  +F  I   D+VSW +MI G    G 
Sbjct: 296 LHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGP 355

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             +A+ L+  ME+ N+KP+ +T +AVL+AC+
Sbjct: 356 AREALVLFDRMELGNLKPNHITFLAVLTACS 386



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 16/197 (8%)

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN--------------L 333
            L +CA LG   +G  +HA   + G   + +   +L+++Y K                 L
Sbjct: 64  ALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVL 123

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           +   +VF  +  +DV  W+T++ G A  G   EAL L   M     KP++ T ++VL   
Sbjct: 124 ESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIF 183

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           +    V  G M  +      G    V   + ++DM       D +V+  + +P V  A +
Sbjct: 184 AEGADVRRG-MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLP-VRDAIL 241

Query: 454 WGALLGACKIHENVELA 470
           W ++L  C  + +V+ A
Sbjct: 242 WNSMLAGCAQNGSVDEA 258


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/648 (37%), Positives = 377/648 (58%), Gaps = 37/648 (5%)

Query: 34  HQHHPHPVFSLIKQCK---NIKQLKQIHTQMLRTGL-FFDPYSASKLFTPCALGTFSSLE 89
           H ++      L+ +C    +++QL +I  Q++ + +   DP   +  F   +  +  +L 
Sbjct: 17  HDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVS-SSHGNLR 75

Query: 90  YAREMFDQ-IPQPNLYTWNTLIRAYSSSAEPIQSFMIFL-QLVYNSPYFPNEFTFPFVIK 147
           ++  +F+  +  PN++ +N L++A+S       +   F  QLV  +   P+E+TF  V+K
Sbjct: 76  HSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLK 135

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A L Q   GQ +H  V K   E +LF+ NSL+  Y   G   +A  +F  +  +DVVS
Sbjct: 136 ACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------- 260
           WN++ISG+   G  +KA  ++  M  +N+    V+   ++S  A+  +LE  R       
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMP 251

Query: 261 ------W--------PNE----ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                 W         NE    A+ +F ++Q    + P++ T VSVLSACA LGA+D+G 
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            IH  +++  I++  +L  +L DMY KCG + +A  VFH +  RDV  WS +I G AMYG
Sbjct: 312 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG 371

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
              EA + F+ M E  ++PN ++F  +L AC+H+GLVD+G  +F+ M  VYG+ P ++HY
Sbjct: 372 YANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHY 431

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            C+VD+L RAG LD+A   I  MP+ P   VWGALLG C+I+++ E  E     +LEL+ 
Sbjct: 432 GCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDS 491

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            + G+LV L+N+YA  G+ D+ +  R  MR +   K PGCS IE+N  +++F  G+SSHP
Sbjct: 492 NHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHP 551

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
               IYS + E+  ++K  GY P    ++  ++EE+ +E AL+ HSE+LA+A+GLI+   
Sbjct: 552 QSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEE-KEDALSTHSEKLALAFGLINTSE 610

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
              IRIVKNLRVC DCH   K+ISK+  REI++RDR RFHHF+ G CS
Sbjct: 611 GTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 368/663 (55%), Gaps = 74/663 (11%)

Query: 63  RTGLFFDPYS-----ASKLFTPCALG----TFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           R G+    +S     AS LF   A+      F+  E AR++FD +P+ +   WNT+I  +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S ++    S  +F+ ++     F +  T   V+ A A L ++R+G  I  +  K     D
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +++   LI  Y+ CG       +F  I + D++S+N+MISG+      E A+ L+RE+  
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 234 ENVKPDEVTMV-----------------------------------AVLSACAKKRDLEF 258
              + +  T+V                                   A+ +   +  +++F
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 259 GR-------------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            R             W             + A+S+F E+     ++P+  T  S+LSACA
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM--PQLSPNPVTVTSILSACA 426

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           QLGA+ IG  +H  +K + ++ N Y++T+L+DMY KCG++ +A ++F  +  ++V  W+ 
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI G+ ++G G+EAL LF  M ++ + P  VTF ++L ACSHSGLV EG   F+ M   Y
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G  P  +HY CMVD+LGRAG L  A+EFIE+MP+ PG +VWGALLGAC IH+N E+A  A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              L +L+PEN G  VLLSNIY+    +   + +R+ ++   L K PGC+ IE++ + + 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGY-VPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           F +G+ SHP    I+  L+++  +++  GY     +  L  VE+E+ +E  +N+HSE+LA
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEE-KELMVNVHSEKLA 725

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GLIS +P   IRI+KNLRVC DCHT  K ISK+  R I++RD  RFHHF+ G CSC 
Sbjct: 726 IAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCG 785

Query: 653 DYW 655
           DYW
Sbjct: 786 DYW 788



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 44/349 (12%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            +L+     + QL QI  Q++  G+ +D  S +KL          ++ + R++F+++ +P
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKL--THKFFDLGAVAHVRQLFNKVSKP 75

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L+ +N LIR +S +  P  S  ++  L   +   P+ FT+ F I AA+RL   RVG  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H   I      +LF+ ++++  Y       +A  VF ++ ++D V WN+MISGF +  +F
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E +I ++ +M    +  D  T+  VL+A A+ ++   G                      
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG---------------------- 233

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
                             +G+Q  A   K+G+  + Y+ T LI +Y+KCG   K   +F 
Sbjct: 234 ------------------MGIQCLA--SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
            +   D+  ++ MI+G+        A+ LF  +  +  + N+ T   ++
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 124/228 (54%), Gaps = 14/228 (6%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           + I    L+ G+   P  ++ L T  C L   + +++AR++FD+ P+ +L +WN +I  Y
Sbjct: 335 RLIQNLSLKIGIILQPSVSTALTTVYCRL---NEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 114 SSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           + +    ++  +F +++   P   PN  T   ++ A A+L    +G+ +HG++     E 
Sbjct: 392 TQNGLTDRAISLFQEMM---PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           ++++S +L+  YA CG +  A  +F ++  K+VV+WN+MI+G+   G  ++A++L+ EM 
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              + P  VT +++L AC+    +  G   NE   IFH +  +    P
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEG---NE---IFHSMANNYGFQP 550


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 368/663 (55%), Gaps = 74/663 (11%)

Query: 63  RTGLFFDPYS-----ASKLFTPCALG----TFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           R G+    +S     AS LF   A+      F+  E AR++FD +P+ +   WNT+I  +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S ++    S  +F+ ++     F +  T   V+ A A L ++R+G  I  +  K     D
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +++   LI  Y+ CG       +F  I + D++S+N+MISG+      E A+ L+RE+  
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 234 ENVKPDEVTMV-----------------------------------AVLSACAKKRDLEF 258
              + +  T+V                                   A+ +   +  +++F
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 259 GR-------------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            R             W             + A+S+F E+     ++P+  T  S+LSACA
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM--PQLSPNPVTVTSILSACA 426

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           QLGA+ IG  +H  +K + ++ N Y++T+L+DMY KCG++ +A ++F  +  ++V  W+ 
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI G+ ++G G+EAL LF  M ++ + P  VTF ++L ACSHSGLV EG   F+ M   Y
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G  P  +HY CMVD+LGRAG L  A+EFIE+MP+ PG +VWGALLGAC IH+N E+A  A
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVA 606

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              L +L+PEN G  VLLSNIY+    +   + +R+ ++   L K PGC+ IE++ + + 
Sbjct: 607 SKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYV 666

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGY-VPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           F +G+ SHP    I+  L+++  +++  GY     +  L  VE+E+ +E  +N+HSE+LA
Sbjct: 667 FTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEE-KELMVNVHSEKLA 725

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GLIS +P   IRI+KNLRVC DCHT  K ISK+  R I++RD  RFHHF+ G CSC 
Sbjct: 726 IAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCG 785

Query: 653 DYW 655
           DYW
Sbjct: 786 DYW 788



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 44/349 (12%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            +L+     + QL QI  Q++  G+ +D  S +KL          ++ + R++F+++ +P
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKL--THKFFDLGAVAHVRQLFNKVSKP 75

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L+ +N LIR +S +  P  S  ++  L   +   P+ FT+ F I AA+RL   RVG  +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H   I      +LF+ ++++  Y       +A  VF ++ ++D V WN+MISGF +  +F
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E +I ++ +M    +  D  T+  VL+A A+ ++   G                      
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG---------------------- 233

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
                             +G+Q  A   K+G+  + Y+ T LI +Y+KCG   K   +F 
Sbjct: 234 ------------------MGIQCLA--SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
            +   D+  ++ MI+G+        A+ LF  +  +  + N+ T   ++
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 124/228 (54%), Gaps = 14/228 (6%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           + I    L+ G+   P  ++ L T  C L   + +++AR++FD+ P+ +L +WN +I  Y
Sbjct: 335 RLIQNLSLKIGIILQPSVSTALTTVYCRL---NEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 114 SSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           + +    ++  +F +++   P   PN  T   ++ A A+L    +G+ +HG++     E 
Sbjct: 392 TQNGLTDRAISLFQEMM---PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           ++++S +L+  YA CG +  A  +F ++  K+VV+WN+MI+G+   G  ++A++L+ EM 
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              + P  VT +++L AC+    +  G   NE   IFH +  +    P
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEG---NE---IFHSMANNYGFQP 550


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 337/568 (59%), Gaps = 45/568 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAA 149
           AR  FD+IP PN      +   Y  +     S  +F  ++  +S    +E        A+
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG--DLAMAYCVFVMIGKKDVVS 207
           AR+    V  ++H ++ K  FE +  + N+++  YA  G  DL +A  VF  + ++DVVS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WNSMI+ + Q G   +AI LY +M                                    
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKM------------------------------------ 145

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
               L +   +  +     +VL ACA  GA+  G  IH ++ + G++ N Y+ TS++DMY
Sbjct: 146 ----LNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMY 201

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG ++ A   F  +K +++  WS MI G+ M+G G+EAL++F+ M+ + ++PN +TF 
Sbjct: 202 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 261

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           +VL ACSH+GL+DEGR ++N M+  +G+  GV+HY CMVD+LGRAG LDEA   I++M +
Sbjct: 262 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 321

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P A++WGALL AC+IH+NVELAE +   L EL+  N G  VLLSNIYA+ G W +V  +
Sbjct: 322 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERI 381

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  ++   ++K PG SS E+ G+I+ F  G+ SHP   EIYS L++++ R++  GYVPN 
Sbjct: 382 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 441

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++EE+ +E AL +HSE+LA+A+ L++  P   I I+KNLRVC DCHT  K I+K
Sbjct: 442 GSVLHDLDEEE-KESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITK 500

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI++RD  RFHHF+ G CSC DYW
Sbjct: 501 ITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/622 (37%), Positives = 361/622 (58%), Gaps = 21/622 (3%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+   + +   + +  ++H    +     DP+  + L    A      + YAR +FD++ 
Sbjct: 119 PILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYA--ACGRINYARNVFDEMS 176

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q ++ TWNT+I  Y       ++F +F ++  +S   P+E     ++ A  R    R  +
Sbjct: 177 QRDVVTWNTMIERYCRFGLLDEAFKLFEEM-KDSNVMPDEMILCNIVSACGRTGNMRYNR 235

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           AI+  +I++    D  +  +L+  YA  G + MA   F  +  +++    +M+SG+ + G
Sbjct: 236 AIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAG 295

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             + A  ++ + EM+    D V    ++SA A+         P EAL +F E+  S  + 
Sbjct: 296 RLDDARVIFDQTEMK----DLVCWTTMISAYAESDH------PQEALRVFEEMCCS-GIK 344

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD  T +SV+SAC  LG +D    +H      G++    +  +LI+MY KCG LD A +V
Sbjct: 345 PDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDV 404

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  + +R+V  WS+MI  FAM+G   ++L LF++M++  V+PN VTF  VL  CSHSGLV
Sbjct: 405 FEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLV 464

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+  F  M   Y + P ++HY CMVD+ GRA LL EA+E IE MP+ P   +WG+L+ 
Sbjct: 465 EEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMS 524

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H  +EL E A   +L+LEP++ GALVL+SNIYA+  +WD V  +R  M    + KE
Sbjct: 525 ACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKE 584

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
            G S I++NG+ H+FL G+  H    EIY+KL E+V++LK  GYVP+   +L  VEEE+ 
Sbjct: 585 KGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEK 644

Query: 580 QEQALNLHSERLAIAYGLISVEPSQP------IRIVKNLRVCGDCHTVAKLISKLYNREI 633
           ++  L  HSE+LA+ +GL++ E  +       IRIVKNLRVC DCH   KL+SK+Y  EI
Sbjct: 645 KDLVL-WHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEI 703

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RDR RFH ++ G CSC DYW
Sbjct: 704 IVRDRTRFHRYKDGLCSCRDYW 725



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 232/473 (49%), Gaps = 52/473 (10%)

Query: 38  PHPVFSL---------IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           P P F++         +  CK++  +KQ+H  +LRT    +    S LF      +  +L
Sbjct: 6   PRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSFSSSSINL 63

Query: 89  EYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
            YA  +F  I P P    +N+L+R  S S EP  + + + ++ +    F +  +FP ++K
Sbjct: 64  SYALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRF-DRISFPPILK 122

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A +++     G  +HG   K +   D F+   L+  YA CG +  A  VF  + ++DVV+
Sbjct: 123 AVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVT 182

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN+MI  + + G  ++A +L+ EM+  NV PDE+ +  ++SAC +  ++ + R       
Sbjct: 183 WNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR------- 235

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             ++  +  +V  D     ++++  A  G MD+ ++   KM  +    N +++T+++  Y
Sbjct: 236 AIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR----NLFVSTAMVSGY 291

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +K G LD A  +F   + +D+  W+TMI+ +A     +EAL +F  M  + +KP+ VT  
Sbjct: 292 SKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTML 351

Query: 388 NVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +V+ AC + G +D+ +    +  +  +  V+P       +++M  + G LD A +  EKM
Sbjct: 352 SVISACVNLGTLDKAKWVHRYTHLNGLESVLP---IDNALINMYAKCGGLDAARDVFEKM 408

Query: 446 PIVPGASVWGALLGACKIH---------------ENVELAE-------YACSH 476
           P     S W +++ A  +H               ENVE  E       Y CSH
Sbjct: 409 PTRNVVS-WSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSH 460


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/650 (38%), Positives = 380/650 (58%), Gaps = 66/650 (10%)

Query: 22  HPNPTTLT-----VNNGHQHHPHPVFS-LIKQCKNIKQLKQ---IHTQMLRTGLFFD-PY 71
           +PN TT       +NNG       +++ L+K+C  + +LKQ   +HT ++ +    D   
Sbjct: 69  NPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVI 128

Query: 72  SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS---SAEPIQSFMIFLQ 128
             S LF     G   SLE AR++FD++   ++ TW ++I  YS    ++    + ++FL+
Sbjct: 129 KNSILFMYAKCG---SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLE 185

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           +V +    PNEF    ++K    L     G+ IHG   K  F++++F+ +SL+  YA CG
Sbjct: 186 MVRDG-LRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCG 244

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           +L  +  VF  +  K+ VSWN                                   A++S
Sbjct: 245 ELRESRLVFDELESKNEVSWN-----------------------------------ALIS 269

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
             A+K + E      EAL +F ++Q  +     EFT+ ++L + +  G+++ G  +HA M
Sbjct: 270 GFARKGEGE------EALGLFVKMQ-REGFGATEFTYSALLCSSSTTGSLEQGKWLHAHM 322

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            K G KL  Y+  +L+ MY K GN+  A +VF  +   DV   ++M+ G+A +G G+EA+
Sbjct: 323 MKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAV 382

Query: 369 DLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           +LF  M    +++PN +TF +VL ACSH+GL+DEG  +F  M+  YG+ P + HYT +VD
Sbjct: 383 ELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVD 441

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           + GRAGLLD+A  FIE+MPI P A++WGALLGA K+H+N E+  YA   +LEL+P   GA
Sbjct: 442 LFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGA 501

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
             LLSNIYA  G+W +V+++RK M+ SGLKKEP CS +E+   +H F A + SHP   ++
Sbjct: 502 HTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKV 561

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL--HSERLAIAYGLISVEPSQP 605
           Y   + +  ++K  GYVP+ SH+   V   D QE+ LNL  HSE+LA+A+ L++ +P   
Sbjct: 562 YEMWENLNQKIKEIGYVPDTSHVHVFV---DQQEKELNLQYHSEKLALAFALLNTKPGSV 618

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IRI+KN+RVCGDCH+  K +S +  REI++RD  RFHHFR G+CSC DYW
Sbjct: 619 IRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 349/628 (55%), Gaps = 62/628 (9%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           S+E   + F  +   NL + N L+  +  +    Q   I +QL+    + PN +TF  ++
Sbjct: 140 SVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG-FEPNMYTFISIL 198

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           K  A       G+AIHG VIKS    D  + NSL++ YA CG    A  VF  I ++DVV
Sbjct: 199 KTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVV 258

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------- 259
           SW ++I+GFV  G+    + ++ +M  E   P+  T +++L +C+   D++ G       
Sbjct: 259 SWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI 317

Query: 260 ----------------------RWPNEALSIFHEL------------------------- 272
                                 R+  +A +IF+ L                         
Sbjct: 318 VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAV 377

Query: 273 ----QLSK-NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
               Q+ +  V P+EFT  S LS C+++  +D G Q+H+   K G   + ++ ++L+DMY
Sbjct: 378 KCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMY 437

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG ++ A  VF  + SRD   W+T+I G++ +G G +AL  F  M +    P+ VTF 
Sbjct: 438 AKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 497

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSH GL++EG+  FN +  +YG+ P ++HY CMVD+LGRAG   E   FIE+M +
Sbjct: 498 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 557

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
                +W  +LGACK+H N+E  E A   L ELEPE     +LLSN++A  G WD+V+ +
Sbjct: 558 TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNV 617

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M   G+KKEPGCS +EVNG++H FL+ + SHP  +EI+ KL ++  +L S GY PN 
Sbjct: 618 RALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNT 677

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
            H+L  V + + QE  L  HSERLA+A+ L+S    + IRI KNLR+CGDCH   K IS+
Sbjct: 678 DHVLHNVSDREKQE-LLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISE 736

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + N+E+++RD   FHHF+ G+CSC ++W
Sbjct: 737 ITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 211/446 (47%), Gaps = 68/446 (15%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           LK+I  ++++ G+  D +  S L   +  C      SL+ AR++ +++P  ++  WN  +
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVKC-----ESLQCARQVLEEMPIQDVQQWNQKL 62

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            + ++S  P+Q  +    L+ ++    N+F F  +I AAA L     G++IH  V K  F
Sbjct: 63  SS-ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF 121

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E D+ ISN+ +  Y     +   +  F  +  +++ S N+++SGF      ++   +  +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGR-----------------W------------ 261
           + +E  +P+  T +++L  CA K DL  G+                 W            
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 241

Query: 262 PNEALSIFHEL-----------------------------QLSKNVNPDEFTFVSVLSAC 292
            N A  +F E+                              L++  NP+ +TF+S+L +C
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSC 301

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           + L  +D+G Q+HA++ K  +  N ++ T+L+DMY K   L+ A  +F+ +  RD+F W+
Sbjct: 302 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 361

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            ++AG+A  G G +A+  F +MQ   VKPN  T  + L  CS    +D GR   + M   
Sbjct: 362 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIK 420

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEA 438
            G    +   + +VDM  + G +++A
Sbjct: 421 AGQSGDMFVASALVDMYAKCGCVEDA 446



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 123/256 (48%), Gaps = 23/256 (8%)

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP-NEAL 266
           W+S+++ +V+    + A ++  EM +++V+     + +  S            +P  EA+
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP-----------YPLQEAV 75

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F+ ++ ++ +  ++F F S++SA A LG    G  IHA + K G + +  ++ + + M
Sbjct: 76  QLFYLMRHTR-IRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD----LFSRMQEAKVKPN 382
           Y K  +++   + F  +   ++   + +++GF    C  E  D    +  ++     +PN
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGF----CDTETCDQGPRILIQLLVEGFEPN 190

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
             TF ++L  C+  G ++EG+    Q+    G+ P    +  +V++  + G  + A +  
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIK-SGINPDSHLWNSLVNVYAKCGSANYACKVF 249

Query: 443 EKMPIVPGASVWGALL 458
            ++P     S W AL+
Sbjct: 250 GEIPERDVVS-WTALI 264


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 358/616 (58%), Gaps = 55/616 (8%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           LIK C     ++Q + +H  +   G     +  + L        F  L+ AR +FD++P 
Sbjct: 22  LIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYV--KFGLLDEARNLFDEMPD 79

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N+ +W T+I AYS+S    ++ + FL L+      PN +T+  V++A   L+  R    
Sbjct: 80  RNVVSWTTMISAYSNSNLNHKA-LDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---Q 135

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +HG ++K   E D+F+ ++LI  Y+  G+   A  VF  +   D+V WNS+I GF Q   
Sbjct: 136 LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSD 195

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            ++ + LY+ M+    + D V                                       
Sbjct: 196 GDETLHLYKRMK----RADFVA-------------------------------------- 213

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D+ T  SVL AC  L  +++G Q+H  + K    L   L  +L+DMY KCG+L+ A  +F
Sbjct: 214 DQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDL--ILNNALLDMYCKCGSLEDANLLF 271

Query: 341 -HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
              +  +DV  WSTMIAG A  G   +AL LF  M+    KPN +T   VL ACSH+GLV
Sbjct: 272 TRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLV 331

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           ++G  +F  M+  +G+ PG +HY C++D+LGRAG LDEAV+ I +M   P A  W  LLG
Sbjct: 332 NDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLG 391

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H+NV+LA YA   +L+L+P + G  +LLSNIYA + KW++V+E+R+ MR  G+KK+
Sbjct: 392 ACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKD 451

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PGCS IEV+ ++H F+ G++SHP  +EI  +L +++ RL   GYVP+ + +LQ +E E +
Sbjct: 452 PGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQM 511

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            E +L  HSE+LAI +GL+S+   + I I KNLR+CGDCH  AKL+S+L NR I++RD  
Sbjct: 512 -EDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPI 570

Query: 640 RFHHFRGGNCSCMDYW 655
           R+HHFRGG CSC DYW
Sbjct: 571 RYHHFRGGVCSCGDYW 586



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 9/197 (4%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           +A+   H  +LS     D  T+  ++  C   GA+     +H  +   G +   +L  +L
Sbjct: 2   KAMEAMHRNRLS----ADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTL 57

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I+MY K G LD+A  +F  +  R+V  W+TMI+ ++      +ALD    M    V+PN 
Sbjct: 58  INMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNM 117

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            T+++VL AC   GL++  ++  + ++   G+   V   + ++D   + G   +A+    
Sbjct: 118 YTYSSVLRAC--DGLLNLRQLHGSILK--VGLESDVFVRSALIDTYSKLGEQHDALNVFN 173

Query: 444 KMPIVPGASVWGALLGA 460
           +M I     VW +++G 
Sbjct: 174 EM-ITGDLVVWNSIIGG 189


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 376/678 (55%), Gaps = 74/678 (10%)

Query: 44   LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
            L+  C N       K IH  +LR+G+  + + A+ L   +  C      SL  A+ +F+ 
Sbjct: 437  LLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCG-----SLMEAQNVFEG 491

Query: 98   IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
                ++ +WN++I  ++       ++ +F Q + N    P+  TF  V+          +
Sbjct: 492  TQARDVISWNSMIAGHAQHGSYETAYKLF-QEMQNEELEPDNITFASVLSGCKNPEALEL 550

Query: 158  GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            G+ IHG + +S  + D+ + N+LI+ Y  CG L  A  VF  +  +DV+SW +MI G   
Sbjct: 551  GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCAD 610

Query: 218  GGFFEKAIELYREMEMENVKP------------------DEVTMV--------------- 244
             G   KAIEL+ +M+ E  +P                  DE   V               
Sbjct: 611  QGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV 670

Query: 245  --AVLSACAKKRDLE-----FGRWPNE--------------------ALSIFHELQLSKN 277
              A++SA +K   +      F + P+                     A+   +++Q  ++
Sbjct: 671  GNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQ-EQD 729

Query: 278  VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
            V P++F+FVS+L+AC+   A++ G ++HA++ K+ ++ +  +  +LI MY KCG+  +A 
Sbjct: 730  VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789

Query: 338  EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            EVF  +  ++V  W+ MI  +A +G   +AL  F+ M++  +KP+  TFT++L AC+H+G
Sbjct: 790  EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849

Query: 398  LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            LV EG   F+ ME  YGV+P ++HY C+V +LGRA    EA   I +MP  P A+VW  L
Sbjct: 850  LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 458  LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
            LGAC+IH N+ LAE+A ++ L+L   N    +LLSN+YA  G+WD+V+++R+ M   G++
Sbjct: 910  LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 969

Query: 518  KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            KEPG S IEV+  IH+F+A + SHP   EIY++L  +   ++  GY P+  H+L  + + 
Sbjct: 970  KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 1029

Query: 578  DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
              QE +L  HSERLAIAYGLI   P  PIRI KNLR+CGDCHT +K ISKL  REI+ RD
Sbjct: 1030 H-QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 1088

Query: 638  RYRFHHFRGGNCSCMDYW 655
              RFH F+ G CSC DYW
Sbjct: 1089 SNRFHSFKNGKCSCEDYW 1106



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 203/409 (49%), Gaps = 51/409 (12%)

Query: 42  FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            S++  C   K L   K IH+ +   G   D    + L +  A      L  ARE+F  +
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYA--RCGDLPKARELFYTM 391

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ +L +WN +I  Y+   +  ++  ++ Q+  +    P   TF  ++ A A    +  G
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQM-QSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH  +++S  + +  ++N+L++ Y  CG L  A  VF     +DV+SWNSMI+G  Q 
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G +E A +L++EM+ E ++PD +T  +VLS C                            
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCK--------------------------- 543

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           NP+               A+++G QIH ++ + G++L+  L  +LI+MY +CG+L  A  
Sbjct: 544 NPE---------------ALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VFH+++ RDV  W+ MI G A  G   +A++LF +MQ    +P   TF+++L  C+ S  
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC 648

Query: 399 VDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +DEG+      +   Y +  GV +   ++    ++G + +A E  +KMP
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMP 695



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/543 (25%), Positives = 243/543 (44%), Gaps = 94/543 (17%)

Query: 21  RHPNPTTLTVNNGHQHHPHPV-----FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYS 72
           RH  P    V+N HQ  P         +L++ C   + L   K+IH QM+   +  D + 
Sbjct: 5   RHCGPDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFL 64

Query: 73  AS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
           ++    ++  C      S+  A ++F ++P+ ++ +WN+LI  Y+      ++F +F ++
Sbjct: 65  SNLLINMYVKC-----RSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
             N+ + PN+ T+  ++ A     +   G+ IH  +IK+ ++ D  + NSL+  Y  CGD
Sbjct: 120 -QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A  VF  I  +DVVS+N+M+  + Q  + ++ + L+ +M  E + PD+VT + +L A
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI----- 304
                 L+ G+         H+L + + +N D     ++++ C + G +D   Q      
Sbjct: 239 FTTPSMLDEGKR-------IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA 291

Query: 305 --------------------------HAKMKKQGIKLN--CYLT---------------- 320
                                     + +M+  G+ LN   YL+                
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 321 -----------------TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
                             +LI MY +CG+L KA E+F+T+  RD+  W+ +IAG+A    
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
             EA+ L+ +MQ   VKP  VTF ++L AC++S    +G+M    +    G+        
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLAN 470

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL--ELE 481
            +++M  R G L EA    E        S W +++     H + E A      +   ELE
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 482 PEN 484
           P+N
Sbjct: 530 PDN 532



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 184/407 (45%), Gaps = 47/407 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K+IH   +  GL  D    + L T C       ++ A++ F      ++  +N LI A +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCV--RCGDVDSAKQAFKGTADRDVVVYNALIAALA 306

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
                +++F  + ++  +     N  T+  ++ A +       G+ IH  + +     D+
Sbjct: 307 QHGHNVEAFEQYYRMRSDGVAL-NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            I N+LI  YA CGD                                 KA EL+  M   
Sbjct: 366 QIGNALISMYARCGD-------------------------------LPKARELFYTMP-- 392

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             K D ++  A+++  A++ D        EA+ ++ ++Q S+ V P   TF+ +LSACA 
Sbjct: 393 --KRDLISWNAIIAGYARRED------RGEAMRLYKQMQ-SEGVKPGRVTFLHLLSACAN 443

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
             A   G  IH  + + GIK N +L  +L++MY +CG+L +A  VF   ++RDV  W++M
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           IAG A +G    A  LF  MQ  +++P+ +TF +VL  C +   ++ G+    ++    G
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES-G 562

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           +   V     +++M  R G L +A      +      S W A++G C
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 43  SLIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C +   + + K++   +L +G   D    + L +  A     S+  ARE+FD++P
Sbjct: 638 SILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALIS--AYSKSGSMTDAREVFDKMP 695

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +WN +I  Y+ +    Q+ + F   +      PN+F+F  ++ A +       G+
Sbjct: 696 SRDIVSWNKIIAGYAQNGLG-QTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGK 754

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  ++K   + D+ +  +LI  YA CG    A  VF  I +K+VV+WN+MI+ + Q G
Sbjct: 755 RVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG 814

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
              KA+  +  ME E +KPD  T  ++LSAC
Sbjct: 815 LASKALGFFNCMEKEGIKPDGSTFTSILSAC 845


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/594 (39%), Positives = 348/594 (58%), Gaps = 50/594 (8%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH  +L+ GL  D + ++ L        F  L+ A+ +FDQ+   +L +WN++I AY  +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALIN--MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 117 AEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED-D 173
            +P  +   F  +QL       P+  T   +    ++L   R+ ++I G VI+  + D D
Sbjct: 302 NDPSTALRFFKGMQL---GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKD 358

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + I N+L++ YA  G +  A+ VF  + +KD +SWN++++G+ Q G   +AI+ Y     
Sbjct: 359 VVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYN---- 414

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                       ++  C                         ++  P++ T+VS++ A +
Sbjct: 415 ------------MMEEC-------------------------RDTIPNQGTWVSIIPAYS 437

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            +GA+  G++IHAK+ K  + L+ ++ T LID+Y KCG L+ A+ +F+ +       W+ 
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +IA   ++G G EAL LF  M   +VK + +TF ++L ACSHSGLVDEG+  F+ M+  Y
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P +KHY CMVD+LGRAG L++A E +  MPI P AS+WGALL ACKI+ N EL   A
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              LLE++ EN G  VLLSNIYA T KW+ V ++R   R  GL+K PG SS+ V  +   
Sbjct: 618 SDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEV 677

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F  G  +HP   EIY +L  + A++KS GYVP+ S + Q + EED +EQ LN HSERLAI
Sbjct: 678 FYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDI-EEDEKEQILNSHSERLAI 736

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           A+G+IS  P  PIRI KNLRVCGDCH   K IS++  REI++RD  RFHHF+ G
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 227/494 (45%), Gaps = 75/494 (15%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +L   C N+   K++H  +L  G   +   ++KL       T   +  +R  FD I + N
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYV--THGDISLSRSTFDYIHKKN 84

Query: 103 LYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           +++WN++I AY       E +        +       P+ +TFP ++KA   LV    G+
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GK 141

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  V K  FEDD+F++ SL+H Y+  G L +A+ VFV +  KDV SWN+MISGF Q G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL----------------------- 256
               A+ +   M+ E VK D +T+ ++L  CA+  D+                       
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 257 -------EFGR------------------W------------PNEALSIFHELQLSKNVN 279
                  +FGR                  W            P+ AL  F  +QL   + 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLG-GIR 320

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           PD  T VS+ S  +QL    I   I    ++++ +  +  +  +L++MY K G ++ A  
Sbjct: 321 PDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHT 380

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSG 397
           VF  +  +D   W+T++ G+   G   EA+D ++ M+E +   PN  T+ +++ A SH G
Sbjct: 381 VFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVG 440

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGA 456
            + +G     ++     +   V   TC++D+ G+ G L++A+    ++P     SV W A
Sbjct: 441 ALQQGMKIHAKLIK-NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP--RDTSVPWNA 497

Query: 457 LLGACKIHENVELA 470
           ++ +  IH   E A
Sbjct: 498 IIASLGIHGRGEEA 511



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F ++ ++C  + A     ++HA +   G   N  L+T LI++Y   G++  +   F  + 
Sbjct: 25  FNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 345 SRDVFVWSTMIAGFAMYGCGREALD----LFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
            +++F W+++I+ +  +G   EA++    LFS      ++P+  TF  +L AC    LVD
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD 139

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-G 459
             ++     +   G    V     +V +  R G+LD A +    MP+    S W A++ G
Sbjct: 140 GKKVHCCVFK--MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISG 196

Query: 460 ACK 462
            C+
Sbjct: 197 FCQ 199


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 362/605 (59%), Gaps = 53/605 (8%)

Query: 56  QIHTQMLRTGL---FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           Q+HT ++++GL    F   S   +++   +     +  A+ +FD +   N  +WN++I  
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLM-----VSDAKAVFDSMENRNAVSWNSMIAG 268

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           + ++   +++F +F ++         +  F  VIK  A + +    + +H  VIK+  + 
Sbjct: 269 FVTNGLDLEAFELFYRMRLEGVKL-TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF 327

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           DL I  +L+  Y+ C ++  A+ +F M+ G ++VVSW ++ISG+VQ G  ++A+ L+   
Sbjct: 328 DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF--- 384

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                             C  +R+                    + V P+EFTF SVL+A
Sbjct: 385 ------------------CQMRRE--------------------EGVEPNEFTFSSVLNA 406

Query: 292 CAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           CA    +++ G Q H+   K G      ++++L+ MY K GN++ A EVF     RD+  
Sbjct: 407 CAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS 466

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++MI+G+A +GCG+++L +F  M+   ++ + +TF  V+ AC+H+GLV+EG+ +F+ M 
Sbjct: 467 WNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMV 526

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             Y +VP ++HY+CMVD+  RAG+L++A++ I KMP   GA++W  LL AC++H NV+L 
Sbjct: 527 KDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLG 586

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   L+ L+P++  A VLLSNIYA  G W   +++RK M +  +KKE G S IEV  +
Sbjct: 587 ELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNK 646

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
              F+AG+ SHP    IY KL+E+  RLK  GY P+  ++L  VEEE  +E  L+ HSER
Sbjct: 647 TFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEH-KEVILSQHSER 705

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+GLI+  P  PI+IVKNLRVCGDCHTV KLISK+  R+I++RD  RFHHF+GG+CS
Sbjct: 706 LAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCS 765

Query: 651 CMDYW 655
           C DYW
Sbjct: 766 CGDYW 770



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 45/307 (14%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKA 148
           +++++FD+ PQ  L   N L+  +S + +  ++  +FL L  + SP   +  +   V+K 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSP--TDGSSLSCVLKV 101

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
              L    VG+ +H   IK  F +D+ +  SL+  Y     +     VF  +  K+VVSW
Sbjct: 102 CGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSW 161

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
            S+++G+ Q G  E+A++L+ +M++E +KP+  T  AVL   A                 
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAAD--------------- 206

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                      GA++ GVQ+H  + K G+    ++  S+++MY+
Sbjct: 207 ---------------------------GAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYS 239

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           K   +  A  VF ++++R+   W++MIAGF   G   EA +LF RM+   VK     F  
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299

Query: 389 VLCACSH 395
           V+  C++
Sbjct: 300 VIKLCAN 306



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 7/214 (3%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI- 98
           ++IK C NIK++   KQ+H Q+++ G  FD    + L    A    S ++ A ++F  + 
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV--AYSKCSEIDDAFKLFCMMH 356

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRV 157
              N+ +W  +I  Y  +    ++  +F Q+       PNEFTF  V+ A AA       
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQ 416

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+  H   IKS F + L +S++L+  YA  G++  A  VF     +D+VSWNSMISG+ Q
Sbjct: 417 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 476

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            G  +K+++++ EM  +N++ D +T + V+SAC 
Sbjct: 477 HGCGKKSLKIFEEMRSKNLELDGITFIGVISACT 510



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 256 LEFGR--WPNEALSIFHELQLSKNVNPDEFTFVS-VLSACAQLGAMDIGVQIHAKMKKQG 312
            EF R     EAL++F  L L ++ +P + + +S VL  C  L    +G Q+H +  K G
Sbjct: 65  FEFSRNDQNKEALNLF--LGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCG 122

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
              +  + TSL+DMY K  +++    VF  ++ ++V  W++++AG+   G   +AL LFS
Sbjct: 123 FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFS 182

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           +MQ   +KPN  TF  VL   +  G V++G +  + M    G+   +     MV+M  ++
Sbjct: 183 QMQLEGIKPNPFTFAAVLGGLAADGAVEKG-VQVHTMVIKSGLDSTIFVGNSMVNMYSKS 241

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
            ++ +A    + M      S W +++ A  +   ++L  +   + + LE
Sbjct: 242 LMVSDAKAVFDSMENRNAVS-WNSMI-AGFVTNGLDLEAFELFYRMRLE 288


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/520 (43%), Positives = 327/520 (62%), Gaps = 44/520 (8%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+E T   ++ A A+L     G+ +H    +   +++L ++N+++  Y  C D+  A  V
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  I +KDV+SW SM+SG  + G+F+                                  
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQ---------------------------------- 94

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  E+L++F ++QL K + PDE T V VLSACAQ GA+D G  IH  + K  I  +
Sbjct: 95  -------ESLALFRKMQLHK-IEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 146

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+L+DMY KCG++D AL+VF  ++ R+VF W+ MI G AM+G G +A+ LF +M+ 
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEX 206

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            K+ P+ VTF  +LCACSH+GLVDEG   F  M+  + + P ++HY C+VD+L RA  +D
Sbjct: 207 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 266

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A+ FIE MPI   + +W  LLGAC+   + +LAE     ++ELEP++ G  V+LSN+YA
Sbjct: 267 DALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYA 326

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              +WD+  +LRK M+  G++K PGCS IE+NG IH+F+AG+ SH   ++IY+ ++E+  
Sbjct: 327 GVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 386

Query: 557 RLK-SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           R+    G+VP  +++L  +EEE+ +E +L LHSE+LAIA GLIS     PIRIVKNLRVC
Sbjct: 387 RVNLDGGHVPGTANVLFDIEEEE-KEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVC 445

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH+  K+ SK+YNREI+ RDR RFHHF+ G+CSCMD+W
Sbjct: 446 NDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           N+ PDE T VS++ ACAQLG ++ G  +H+  K+ G+  N  +  +++DMY KC +++ A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            EVF+ ++ +DV  W++M++G A  G  +E+L LF +MQ  K++P+ +T   VL AC+ +
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           G +D+G+ + + +   + +   +   T +VDM  + G +D A++   +M  V     W A
Sbjct: 126 GALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR-VRNVFTWNA 183

Query: 457 LLGACKIHENVELA 470
           ++G   +H + E A
Sbjct: 184 MIGGLAMHGHGEDA 197



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             +E A+E+F++I + ++ +W +++   + S    +S  +F ++  +    P+E T   V
Sbjct: 60  DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE-PDEITLVGV 118

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A A+      G+ IH ++ K     DL +  +L+  YA CG + +A  VF  +  ++V
Sbjct: 119 LSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 178

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
            +WN+MI G    G  E AI L+ +ME + + PD+VT +A+L AC+           +E 
Sbjct: 179 FTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSH------AGLVDEG 232

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L++F  ++    + P    +  V+    +   +D  +   A ++   IK N  L  +L+ 
Sbjct: 233 LAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL---AFIENMPIKANSVLWATLLG 289

Query: 326 MYTKCGNLDKALEVFHTV 343
                G+ D A ++   V
Sbjct: 290 ACRSGGHFDLAEKIXRRV 307


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 364/617 (58%), Gaps = 53/617 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIPQP 101
           +++    ++++L+Q H  ++ TG        +KL T  CA G   S+ Y R +F  +  P
Sbjct: 15  AVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAG---SIAYTRRLFRSVSDP 71

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           + + +N+LI+A S+    + +   + ++++ S   P+ +TF  VIKA A L   R+G  +
Sbjct: 72  DSFLFNSLIKASSNFGFSLDAVFFYRRMLH-SRIVPSTYTFTSVIKACADLSLLRLGTIV 130

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  V  S +  + F+  +L+ FYA      +A  VF  + ++ +++WNSMISG+ Q G  
Sbjct: 131 HSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLA 190

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            +A+E                                         +F++++ S    PD
Sbjct: 191 SEAVE-----------------------------------------VFNKMRESGG-EPD 208

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
             TFVSVLSAC+QLG++D+G  +H  +   GI++N  L TSL++M+++CG++ +A  VF 
Sbjct: 209 SATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFD 268

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           ++   +V  W+ MI+G+ M+G G EA+++F RM+   V PN VT+  VL AC+H+GL++E
Sbjct: 269 SMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINE 328

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALL 458
           GR+ F  M+  YGVVPGV+H+ CMVDM GR GLL+EA +F+  +    +VP  +VW A+L
Sbjct: 329 GRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVP--AVWTAML 386

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GACK+H+N +L      +L+  EPEN G  VLLSN+YA  G+ D V  +R  M   GLKK
Sbjct: 387 GACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKK 446

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           + G S+I+V    + F  G+ SHP   EIY  LDE++ R K  GY P     +  +EEE 
Sbjct: 447 QVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEE- 505

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE+LA+A+GL+       +RIVKNLR+C DCH+  K IS + NREI++RD+
Sbjct: 506 EREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDK 565

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFR G+CSC DYW
Sbjct: 566 LRFHHFREGSCSCSDYW 582


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/609 (39%), Positives = 357/609 (58%), Gaps = 16/609 (2%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL--EYAREMFDQIPQPNLYTWN 107
            I Q+KQ H ++L  GL  D    S L    A+ + SSL  +YA  +++ I  P ++  N
Sbjct: 43  GITQIKQAHARILVLGLANDGRITSHLLAFLAISS-SSLPSDYALSIYNSISHPTVFATN 101

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            +IR +     P  S  ++  +  +    PN+ T  FV++A +     R G  +   VIK
Sbjct: 102 NMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIK 161

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNSMISGFVQGGFFEKAIE 226
             F  D+F+ N+LIH Y  C  +  A  VF  +   +DVVSWNSMI GFV+ G    A +
Sbjct: 162 LGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQK 221

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ EM  ++V    ++   ++S C +  +LE      +AL  F EL   K + P+E   V
Sbjct: 222 LFVEMPEKDV----ISWGTIISGCVQNGELE------KALDYFKELGEQK-LRPNEAILV 270

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           S+L+A AQLG ++ G +IH+        +   L T+L+DMY KCG +D++  +F  +  +
Sbjct: 271 SLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEK 330

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D + W+ MI G A +G G+EAL LF +       P  VTF  VL ACS +GLV EG+ FF
Sbjct: 331 DKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFF 390

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M   YG+ P ++HY CMVD+L RAG + +AVE I +MP  P   +W ++LG+C++H  
Sbjct: 391 KLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGF 450

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           +EL E   + L++++P ++G  V L+ I+A+  KW++VS++R+ M      K  G S IE
Sbjct: 451 IELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIE 510

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
             G +H+F+AG+  H    EIY  L+ +  R+ + GY  N S +L  +EEE+ +E A+  
Sbjct: 511 AEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEE-KENAIKE 569

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSERLAIA+GL+  +    IRI+KNLRVCGDCH V+K+IS ++ REI++RD  RFHHF+ 
Sbjct: 570 HSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKK 629

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 630 GICSCQDYW 638


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 341/592 (57%), Gaps = 47/592 (7%)

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ--SFMIF 126
           +P  + KL   CA+    SL YA+ +F +I  P    WN++IR +S S  P+Q  + + +
Sbjct: 429 NPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFY 488

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
             ++  S   P+ +TF F++KA     +    + +HG +I+  ++ D+ +  +LI  YA 
Sbjct: 489 NHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG 548

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
            G +  A+ VF  +  +D+VSWNSMIS + Q G  E                        
Sbjct: 549 NGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHE------------------------ 584

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
                            EAL ++ ++++S NV  D FT VS+LS+CA +GA+ +GVQ+H 
Sbjct: 585 -----------------EALKMYDQMRIS-NVGFDGFTLVSLLSSCAHVGALHMGVQMHR 626

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              ++ +  N ++  +LIDMY KCG+L  AL +F+++  RDVF W++MI G+ ++G G E
Sbjct: 627 FAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDE 686

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           A+  F  M  A V+PN++TF  +LC CSH GLV EG  +F+ M   + + PG+KHY CMV
Sbjct: 687 AITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMV 746

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+ GRAG L EA+E I   P      +W  LLG+CKIH NVE+ E A  +L++L     G
Sbjct: 747 DLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAG 806

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             VLLS IYA+      V+ +RK ++  G+K  PG S IEV  ++H+F+  + SHP  +E
Sbjct: 807 DCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSRE 866

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVE---EEDVQEQALNLHSERLAIAYGLISVEPS 603
           IY KL+E++ R    GY    S L+   E   +E   E + + HSE+LAIAYGL      
Sbjct: 867 IYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEG 926

Query: 604 QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             + IVKNLRVC DCH   K +SK ++REI++RDR RFHHFRGG+CSC ++W
Sbjct: 927 TSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/617 (40%), Positives = 358/617 (58%), Gaps = 16/617 (2%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFF-DPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           P+   + +   +    +IH    + G F  DP+  S L    A      +  AR +FD++
Sbjct: 120 PLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYA--ACGRIMDARFLFDKM 177

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              ++ TWN +I  YS +A       ++ ++   S   P+      V+ A A       G
Sbjct: 178 SHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM-KTSGTEPDAIILCTVLSACAHAGNLSYG 236

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           +AIH  +  + F     I  SL++ YA CG + +A  V+  +  K +V   +M+SG+ + 
Sbjct: 237 KAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  + A  ++  M    V+ D V   A++S  A+         P EAL +F+E+Q  + +
Sbjct: 297 GMVQDARFIFDRM----VEKDLVCWSAMISGYAESYQ------PLEALQLFNEMQ-RRRI 345

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD+ T +SV+SACA +GA+     IH    K G      +  +LIDMY KCGNL KA E
Sbjct: 346 VPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKARE 405

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  ++V  WS+MI  FAM+G    A+ LF RM+E  ++PN VTF  VL ACSH+GL
Sbjct: 406 VFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGL 465

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EG+ FF+ M   + + P  +HY CMVD+  RA  L +A+E IE MP  P   +WG+L+
Sbjct: 466 VEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLM 525

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            AC+ H  +EL E+A + LLELEP++ GALV+LSNIYAK  +WD+V  +RK M+  G+ K
Sbjct: 526 SACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSK 585

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           E  CS IEVN E+H F+  +  H    EIY KLD +V++LK  GY P+ S +L +  EE+
Sbjct: 586 EKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGIL-VDLEEE 644

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +++ +  HSE+LA+ YGLI       IRIVKNLR+C DCH+  KL+SK++  EI++RDR
Sbjct: 645 EKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDR 704

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF GG CSC DYW
Sbjct: 705 TRFHHFNGGICSCRDYW 721



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 216/432 (50%), Gaps = 20/432 (4%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG---TFSSLEYAREMFDQIPQ 100
           L+  CK ++ +KQIH Q+LR+ +        KL   C      + S+L+YA  +F  IP 
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQ 159
           P     N L+R +S    P  +  ++L L  N   FP + F+FP ++KA ++L    +G 
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNG--FPLDRFSFPPLLKAVSKLSALNLGL 135

Query: 160 AIHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            IHG+  K   F  D FI ++LI  YA CG +  A  +F  +  +DVV+WN MI G+ Q 
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQN 195

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
             ++  ++LY EM+    +PD + +  VLSACA   +L +G+         H+       
Sbjct: 196 AHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGK-------AIHQFIKDNGF 248

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                   S+++  A  GAM +  +++ ++  + +     ++T+++  Y K G +  A  
Sbjct: 249 RVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHM----VVSTAMLSGYAKLGMVQDARF 304

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  +  +D+  WS MI+G+A      EAL LF+ MQ  ++ P+ +T  +V+ AC++ G 
Sbjct: 305 IFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGA 364

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           + + + + +      G    +     ++DM  + G L +A E  E MP     S W +++
Sbjct: 365 LVQAK-WIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMI 422

Query: 459 GACKIHENVELA 470
            A  +H + + A
Sbjct: 423 NAFAMHGDADSA 434


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 346/576 (60%), Gaps = 48/576 (8%)

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C  G  S    AR +FD++P  ++ +W  LI  Y+ +  P ++  +   ++  + + PN 
Sbjct: 3   CKCGAVSD---ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDML-RARFRPNG 58

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           FTF  ++KA        +G+ +H + +K ++++D+++ ++L+  YA C  + MA  VF  
Sbjct: 59  FTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 118

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           +  K+ VSWN++I+GF                                   A+K D E  
Sbjct: 119 LVSKNEVSWNALIAGF-----------------------------------ARKADGE-- 141

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                 L  F E+Q         FT+ S+ SA A++GA++ G  +HA + K G KL  ++
Sbjct: 142 ----TTLMKFAEMQ-RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 196

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +++ MY K G++  A +VF  +  RD+  W+TM+   A YG G+EA+  F  +++  +
Sbjct: 197 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI 256

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           + N +TF +VL ACSH GLV EG+ +F+ M+  Y V P + HY   VD+LGRAGLL EA+
Sbjct: 257 QLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEAL 315

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
            F+ KMP+ P A+VWGALLGAC++H+N ++ +YA  H+ EL+P++ G  VLL NIYA TG
Sbjct: 316 IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTG 375

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           KW++ + +RK M+ +G+KKEP CS +++   +H F+A + +HP   +IY   +EI  R+K
Sbjct: 376 KWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIK 435

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GYVPN +H+L  + E++ +E  L  HSE++A+A+ LI++     IRI+KN+R+CGDCH
Sbjct: 436 KAGYVPNTAHVLLHINEQE-RETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCH 494

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  K +SK++ REI++RD  RFHHF  G+CSC DYW
Sbjct: 495 SAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 42/220 (19%)

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y  CG ++ A  VF  +  +DVVSW  +I+G+ Q     +AI L  +M     +P+  T 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT- 60

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                                                    F S+L A    G   IG Q
Sbjct: 61  -----------------------------------------FTSLLKATGACGGCSIGEQ 79

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +HA   K     + Y+ ++L+DMY +C  +D A+ VF  + S++   W+ +IAGFA    
Sbjct: 80  MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 139

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           G   L  F+ MQ         T++++  A +  G +++GR
Sbjct: 140 GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 179



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 13/198 (6%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG +  A  VF  + SRDV  W+ +IAG+A      EA+ L   M  A+ +PN  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           FT++L A    G    G    + +   Y     V   + ++DM  R   +D A+   +++
Sbjct: 61  FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL 119

Query: 446 PIVPGASVWGALLG--ACKIHENVELAEYACSHLLELEPENHGALVL----LSNIYAKTG 499
            +      W AL+   A K      L ++A     E++    GA       + + +A+ G
Sbjct: 120 -VSKNEVSWNALIAGFARKADGETTLMKFA-----EMQRNGFGATHFTYSSMFSAFARIG 173

Query: 500 KWDNVSELRKHMRVSGLK 517
             +    +  H+  SG K
Sbjct: 174 ALEQGRWVHAHLIKSGQK 191


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 354/614 (57%), Gaps = 45/614 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK-LFTPCA-LGTFSSLEYAREMFDQIPQP 101
           L+K+C NI + KQ+H + ++  LF+    ++  +   CA  G  +S+ YA  +F  I  P
Sbjct: 36  LLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDP 95

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
             + +NT+IR Y +     +  + F   +      P+ FT+P ++KA  RL   R G+ I
Sbjct: 96  CTFDFNTMIRGYVN-VMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQI 154

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG V K   E D+F+ NSLI+ Y  CG++ ++  VF  +  K   SW+SM+S     G +
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            + + L+R M  E                                          N+  +
Sbjct: 215 SECLLLFRGMCSET-----------------------------------------NLKAE 233

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           E   VS L ACA  GA+++G+ IH  + +   +LN  + TSL+DMY KCG LDKAL +F 
Sbjct: 234 ESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ 293

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ R+   +S MI+G A++G G  AL +FS+M +  ++P+ V + +VL ACSHSGLV E
Sbjct: 294 KMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKE 353

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR  F +M     V P  +HY C+VD+LGRAGLL+EA+E I+ +PI     +W   L  C
Sbjct: 354 GRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQC 413

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++ +N+EL + A   LL+L   N G  +L+SN+Y++   WD+V+  R  + + GLK+ PG
Sbjct: 414 RVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPG 473

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S +E+ G+ H+F++ + SHP CKEIY  L ++  +LK  GY P+ + +L  V+EE+ +E
Sbjct: 474 FSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKE 533

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           + L  HS+++AIA+GL+   P   I+I +NLR+C DCHT  K IS +Y REI++RDR RF
Sbjct: 534 R-LKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRF 592

Query: 642 HHFRGGNCSCMDYW 655
           H F+GG CSC DYW
Sbjct: 593 HLFKGGTCSCKDYW 606


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/653 (37%), Positives = 374/653 (57%), Gaps = 54/653 (8%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG--LFFDP 70
           S+P+ + P    P        H HH +P+ + +  C +++ L Q+H   ++ G  L   P
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 71  YSASKLFTPC---ALGTFSSLEYAREMFDQIPQPNLYTW-NTLIRAYSSSAEPIQSFM-- 124
              ++L T C        + L YAR++FD+IP P    W NTL+R Y+            
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEA 122

Query: 125 --IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F++++      P+ +TF  ++KA A       G+  HG+ +K+   +  +++ +LI+
Sbjct: 123 ARVFVRMM-EEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLIN 181

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA CGD+  A  +F  +  + VVS+N+MI+  V+                         
Sbjct: 182 MYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSL---------------------- 219

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                              P EAL +F E+Q +K + P   T +SVLSACA LGA+++G 
Sbjct: 220 -------------------PGEALVLFREMQ-AKGLKPTSVTLISVLSACALLGALELGR 259

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            IH  ++K  +     + T+LIDMY KCG+L+ A+ VF  ++SRD   WS M+  +A +G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            GREA+ +F  M++  +KP+ VTF  VL ACSHSG+V EG  +F+ M   YG+V G+KHY
Sbjct: 320 YGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHY 378

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            C+ D+L R+G L+ A +FI+++PI P A +W  LL AC  H +V++ +     +LEL+ 
Sbjct: 379 GCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDD 438

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            + G  V+ SN+ A TG+W+ ++ +RK M   G+ K PGCSSIE++  +H+F AG+ SHP
Sbjct: 439 SHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHP 498

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
             +E    +DE++ +LK  GYVPN SH+  +   E+ +  +L  HSE+LAI++GL++  P
Sbjct: 499 HSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP 558

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              +RIVKNLRVC DCH++AKL+S ++NR I+LRD  RFHHF  G CSC DYW
Sbjct: 559 GTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 335/571 (58%), Gaps = 49/571 (8%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F+ L  A ++FDQ+PQ N+ +W T+I AYS   +  Q  +  L L+      PN +T+  
Sbjct: 109 FNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLVLMLRDNVRPNVYTYSS 167

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+++   +   R+   +H  +IK   E D+F+ ++LI  +A  G+   A  VF  +   D
Sbjct: 168 VLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGD 224

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            + WNS+I GF Q    + A+EL++ M+      ++ T+                     
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT-------------------- 264

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                 SVL AC  L  +++G+Q H  + K    L   L  +L+
Sbjct: 265 ----------------------SVLRACTGLALLELGMQAHVHIVKYDQDL--ILNNALV 300

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ AL VF+ +K RDV  WSTMI+G A  G  +EAL LF RM+ +  KPN +
Sbjct: 301 DMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYI 360

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GL+++G  +F  M+ +YG+ P  +HY CM+D+LG+AG LD+AV+ + +
Sbjct: 361 TIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNE 420

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P A  W  LLGAC++  N+ LAEYA   ++ L+PE+ G   LLSNIYA + KWD+V
Sbjct: 421 MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSV 480

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
            E+R  MR  G+KKEPGCS IEVN +IH F+ G++SHP   E+  KL++++ RL   GYV
Sbjct: 481 EEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYV 540

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P  + +LQ +E E + E +L  HSE+LA+A+GL+++   + IRI KNLR+CGDCH   KL
Sbjct: 541 PETNFVLQDLEGEQM-EDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            SKL  R I++R   R+HHF+ G CSC DYW
Sbjct: 600 ASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/648 (36%), Positives = 357/648 (55%), Gaps = 75/648 (11%)

Query: 39  HPVF-SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSA-------SKLFTPCALGTFSS 87
           H VF S++K C  +K L+    +H  ++R G+ FD Y+        SK ++   + T+  
Sbjct: 106 HNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKK 165

Query: 88  --------------------LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
                               L   R++F+ +P+ ++ +WNT+I   + +     + M+  
Sbjct: 166 VFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVR 225

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
           ++  N+   P+ FT   V+   A  V    G+ IHG  I++ ++ D+FI +SLI  YA C
Sbjct: 226 EMG-NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKC 284

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
             +  +  VF M+ + D +SWNS+I+G VQ G F+                         
Sbjct: 285 TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFD------------------------- 319

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                           E L  F ++ ++K + P+  +F S++ ACA L  + +G Q+H  
Sbjct: 320 ----------------EGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTTLHLGKQLHGY 362

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + +     N ++ ++L+DMY KCGN+  A  +F  ++  D+  W+ MI G+A++G   +A
Sbjct: 363 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 422

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           + LF RM+   VKPN V F  VL ACSH+GLVDE   +FN M   Y ++PG++HY  + D
Sbjct: 423 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 482

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LGR G L+EA EFI  M I P  SVW  LL AC++H+N+ELAE     L  ++P+N GA
Sbjct: 483 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 542

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
            VLLSNIY+  G+W +  +LR  MR  G+KK+P CS IE+  ++H F+AG+ SHP    I
Sbjct: 543 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 602

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
              L  ++ +++  GYV + + +L  VEEE  +   L  HSERLAI +G+IS      IR
Sbjct: 603 NEALKVLLEQMEREGYVLDTTEVLHDVEEEQ-KRYLLCSHSERLAITFGIISTPAGTTIR 661

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + KNLRVC DCHT  K ISK+  REI++RD  RFHHF+ G CSC D+W
Sbjct: 662 VTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/638 (37%), Positives = 367/638 (57%), Gaps = 40/638 (6%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP----------CA 81
           NG+      +F  +  CKN      +    ++ G   D   A +LF            C 
Sbjct: 155 NGYVKEAKEIFDEMP-CKNSISWNGMLAAYVQNGRIED---ARRLFESKADWELISWNCM 210

Query: 82  LGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN 138
           +G +   + L  AR +FD++P+ +  +WNT+I  Y+ + E +++  +F +    SP   +
Sbjct: 211 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE----SP-VRD 265

Query: 139 EFTFPFVIKAAARLVQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
            FT+  ++    +       + +  GM  K+S        N++I  Y  C  +  A  +F
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELF 320

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  ++V SWN+MI+G+ Q G   +A   +  M     + D ++  A+++  A+     
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP----QRDSISWAAIIAGYAQSG--- 373

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
              +  EAL +F E++       +  TF S LS CA++ A+++G Q+H ++ K G++  C
Sbjct: 374 ---YGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGC 429

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           Y+  +L+ MY KCGN+D A  VF  ++ ++V  W+TMIAG+A +G G+EAL LF  M++ 
Sbjct: 430 YVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKT 489

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            + P+ VT   VL ACSH+GLVD+G  +F  M   YG+    KHYTCM+D+LGRAG LD+
Sbjct: 490 GILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDD 549

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A   ++ MP  P A+ WGALLGA +IH N EL E A   + E+EP+N G  VLLSN+YA 
Sbjct: 550 AQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAA 609

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +G+W +V  +R  MR  G+KK PG S +EV  +IH F  G+S HP    IY+ L+E+  +
Sbjct: 610 SGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLK 669

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYV +   +L  VEEE+ +   L  HSE+LA+A+G++++   +PIR++KNLRVC D
Sbjct: 670 MKKEGYVSSTKLVLHDVEEEE-KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCED 728

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   K ISK+  R I+LRD +RFHHF GG CSC DYW
Sbjct: 729 CHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 176/422 (41%), Gaps = 64/422 (15%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+   N  I  +   G    A  +F  + ++  +SWN+MISG +    F  A +L+ +M 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGR-------------------------WPNEALS 267
                 D V+   ++S C + R+L   R                         +  EA  
Sbjct: 108 TR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKE 163

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI-HAKMKKQGIKLNCYLTTSLIDM 326
           IF E+    ++     ++  +L+A  Q G ++   ++  +K   + I  NC     ++  
Sbjct: 164 IFDEMPCKNSI-----SWNGMLAAYVQNGRIEDARRLFESKADWELISWNC-----MMGG 213

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y K   L  A  +F  +  RD   W+TMI+G+A  G   EA  LF   +E+ V+ +  T+
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTW 269

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           T ++     +G++DE R  F+ M     V      +  ++    +   +D+A E  E MP
Sbjct: 270 TAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
                S W  ++     + ++  A      + + +  +  A++     YA++G  +    
Sbjct: 325 -CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAG---YAQSGYGEEALH 380

Query: 507 LRKHMRVSG--LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           L   M+  G  L +    S++    EI       ++  L K+++ ++  + A L+S  YV
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEI-------AALELGKQVHGRV--VKAGLESGCYV 431

Query: 565 PN 566
            N
Sbjct: 432 GN 433


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/521 (43%), Positives = 324/521 (62%), Gaps = 14/521 (2%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FT PFV+K+ A L +  +G+ +HG  ++   E D ++  SLI  Y  CG +  A  +F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  +D+ SWN++I+G+++ G    A +L+  ME  N+    V+  A++S   +    E
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAE 221

Query: 258 FGRWPNEALSIFHE-LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 +AL +F E LQ    + P+  T VSVL ACAQ  A++ G +IH      G+ LN
Sbjct: 222 ------QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLN 275

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
             + T+L  MY KC +L +A   F  +    +++  W+TMI  +A +GCG EA+ +F  M
Sbjct: 276 SSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENM 335

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
             A V+P+AVTF  +L  CSHSGL+D G   FN M  ++ V P V+HY C+VD+LGRAG 
Sbjct: 336 LRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGR 395

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L EA E I +MP+  G SVWGALL AC+ H N+E+AE A   L  LEP+N G  VLLSN+
Sbjct: 396 LVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNL 455

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA+ G W+ V +LR  ++  G+KK PGCS IE+NG+ H F+  + SHP  KEIY  L+ +
Sbjct: 456 YAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEAL 515

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             ++K  GY+P+ S +L  + EE+ +E  L  HSE+LAIA+GL++  P   +R+ KNLR+
Sbjct: 516 PEKIKMAGYIPDTSFVLHDISEEE-KEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRI 574

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCH   K ISK+Y REI++RD  RFH F+ G+CSC DYW
Sbjct: 575 CGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 132/303 (43%), Gaps = 41/303 (13%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPY----------------SASKLFTPCALGT 84
           ++K C ++ ++   + +H Q LR GL  D Y                 A KLF    +  
Sbjct: 113 VLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 172

Query: 85  FSS-------------LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
            +S             +  A ++F+++   N+ +W  +I  Y+ +    Q+  +F +++ 
Sbjct: 173 MASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 232

Query: 132 N-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
           + S   PN  T   V+ A A+      G+ IH          +  +  +L   YA C  L
Sbjct: 233 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 292

Query: 191 AMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
             A C F MI +  K++++WN+MI+ +   G   +A+ ++  M    V+PD VT + +LS
Sbjct: 293 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 352

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
            C+    ++ G      L+ F+++    +V P    +  V+    + G +    ++ ++M
Sbjct: 353 GCSHSGLIDAG------LNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM 406

Query: 309 KKQ 311
             Q
Sbjct: 407 PMQ 409



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 13/181 (7%)

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           +E Y  M    +  D  T+  VL +CA    +  GR         H   L   +  D + 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGR-------CVHGQGLRVGLEGDFYV 144

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
             S++    + G +    ++  KM    I  +     +LI  Y K G +  A ++F  ++
Sbjct: 145 GASLIDMYVKCGVIGDARKLFDKM----IVRDMASWNALIAGYMKEGEIGVAEDLFERME 200

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQE--AKVKPNAVTFTNVLCACSHSGLVDEG 402
            R++  W+ MI+G+   G   +AL LF  M +  +++KPN VT  +VL AC+ S  ++ G
Sbjct: 201 HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 260

Query: 403 R 403
           R
Sbjct: 261 R 261


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/653 (37%), Positives = 374/653 (57%), Gaps = 54/653 (8%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG--LFFDP 70
           S+P+ + P    P        H HH +P+ + +  C +++ L Q+H   ++ G  L   P
Sbjct: 3   SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62

Query: 71  YSASKLFTPC---ALGTFSSLEYAREMFDQIPQPNLYTW-NTLIRAYSSSAEPIQSFM-- 124
              ++L T C        + L YAR++FD+IP P    W NTL+R Y+            
Sbjct: 63  AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEA 122

Query: 125 --IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F++++      P+ +TF  ++KA A       G+  HG+ +K+   +  +++ +LI+
Sbjct: 123 ARVFVRMM-EEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLIN 181

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA CGD+  A  +F  +  + VVS+N+MI+  V+                         
Sbjct: 182 MYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSL---------------------- 219

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                              P EAL +F E+Q +K + P   T +SVLSACA LGA+++G 
Sbjct: 220 -------------------PGEALVLFREMQ-AKGLKPTSVTLISVLSACALLGALELGR 259

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            IH  ++K  +     + T+LIDMY KCG+L+ A+ VF  ++SRD   WS M+  +A +G
Sbjct: 260 WIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHG 319

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            GREA+ +F  M++  +KP+ VTF  VL ACSHSG+V EG  +F+ M   YG+V G+KHY
Sbjct: 320 YGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHY 378

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            C+ D+L R+G L+ A +FI+++PI P A +W  LL AC  H +V++ +     +LEL+ 
Sbjct: 379 GCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDD 438

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            + G  V+ SN+ A TG+W+ ++ +RK M   G+ K PGCSSIE++  +H+F AG+ SHP
Sbjct: 439 SHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHP 498

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
             +E    +DE++ +LK  GYVPN SH+  +   E+ +  +L  HSE+LAI++GL++  P
Sbjct: 499 HSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP 558

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              +RIVKNLRVC DCH++AKL+S ++NR I+LRD  RFHHF  G CSC DYW
Sbjct: 559 GTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 364/617 (58%), Gaps = 51/617 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++++    +KQL+Q+H  ++ TG        +KL T     +  ++ Y   +F  +P P+
Sbjct: 14  AIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLPD 71

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
            + +N++I++ S    P+     + +++ +S   P+ +TF  VIK+ A L   R+G+ +H
Sbjct: 72  DFLFNSVIKSTSKLRLPLHCVAYYRRML-SSNVSPSNYTFTSVIKSCADLSALRIGKGVH 130

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              + S F  D ++  +L+ FY+ CGD+  A  VF  + +K +V+WNS++SGF Q G   
Sbjct: 131 CHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGL-- 188

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                                                   +EA+ +F++++ S    PD 
Sbjct: 189 ---------------------------------------ADEAIQVFYQMRES-GFEPDS 208

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            TFVS+LSACAQ GA+ +G  +H  +  +G+ LN  L T+LI++Y++CG++ KA EVF  
Sbjct: 209 ATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDK 268

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDE 401
           +K  +V  W+ MI+ +  +G G++A++LF++M++     PN VTF  VL AC+H+GLV+E
Sbjct: 269 MKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEE 328

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS---VWGALL 458
           GR  + +M   Y ++PGV+H+ CMVDMLGRAG LDEA +FI ++     A+   +W A+L
Sbjct: 329 GRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAML 388

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GACK+H N +L       L+ LEP+N G  V+LSNIYA +GK D VS +R  M  + L+K
Sbjct: 389 GACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRK 448

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           + G S IEV  + + F  G+ SH    EIY  L+ +++R K  GY P    ++  VEEE+
Sbjct: 449 QVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEE 508

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE+LA+A+GL+       I IVKNLR+C DCH+  K IS + NR+I +RD+
Sbjct: 509 -KEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDK 566

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G+CSC+DYW
Sbjct: 567 LRFHHFQNGSCSCLDYW 583


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/608 (38%), Positives = 343/608 (56%), Gaps = 53/608 (8%)

Query: 51   IKQLKQIHTQMLRTGLFFDPYSASK---LFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
            ++ + ++H   + TGL  D    S    ++  C      S++ AR +FD++   ++ TWN
Sbjct: 540  LEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG-----SIDDARLLFDKLSVRHVTTWN 594

Query: 108  TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
             +I   +      ++  +FLQ+     + P+  TF  ++ A          + +H     
Sbjct: 595  AMIGGAAQQRCGREALSLFLQM-QREGFIPDATTFINILSANVDEEALEWVKEVHSHATD 653

Query: 168  SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
            +   D L + N+L+H Y+ CG++  A  VF  + +++V +W  MI G  Q G    A   
Sbjct: 654  AGLVD-LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSH 712

Query: 228  YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
            + +M                                          L + + PD  T+VS
Sbjct: 713  FLQM------------------------------------------LREGIVPDATTYVS 730

Query: 288  VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
            +LSACA  GA++   ++H      G+  +  +  +L+ MY KCG++D A  VF  +  RD
Sbjct: 731  ILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERD 790

Query: 348  VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
            VF W+ MI G A +G G EALD F +M+    KPN  ++  VL ACSH+GLVDEGR  F 
Sbjct: 791  VFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFL 850

Query: 408  QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
             M   YG+ P ++HYTCMVD+LGRAGLL+EA  FI  MPI P  + WGALLGAC  + N+
Sbjct: 851  SMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNL 910

Query: 468  ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            E+AE+A    L+L+P++    VLLSNIYA TGKW+    +R  M+  G++KEPG S IEV
Sbjct: 911  EMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEV 970

Query: 528  NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            +  IH F+ G++SHP  KEIY++L++++ RLK+ GYVP+   +L+  ++E  +EQAL  H
Sbjct: 971  DNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEH-KEQALCSH 1029

Query: 588  SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
            SE+LAI YGL+  +   PIR+ KNLRVC DCHT  K ISK+  REI+ RD  RFHHF+ G
Sbjct: 1030 SEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDG 1089

Query: 648  NCSCMDYW 655
             CSC DYW
Sbjct: 1090 VCSCGDYW 1097



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 229/492 (46%), Gaps = 77/492 (15%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +++++C   ++I   KQ+H  ++++G+  + Y A+KL   +  C       L+ AR++FD
Sbjct: 123 NILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCG-----RLQCARQVFD 177

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++ + N+Y W T+I  Y+       +  ++ ++       PNE T+  ++KA    V  +
Sbjct: 178 KLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ-PNEITYLSILKACCCPVNLK 236

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH  +I+S F+ D+ +  +L++ Y  CG +  A  +F  + +++V+SW  MI G  
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G  ++A  L+ +M+ E   P+  T V++L+A A    LE   W  E            
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE---WVKE------------ 341

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                      +H+     G+ L+  +  +L+ MY K G++D A
Sbjct: 342 ---------------------------VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 374

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL--CACS 394
             VF  +  RD+F W+ MI G A +G G+EA  LF +MQ     PN  T+ ++L   A +
Sbjct: 375 RVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIA 434

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            +  ++  ++     E   G +  ++    ++ M  + G +D+A    + M      S W
Sbjct: 435 STSALEWVKVVHKHAEEA-GFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVIS-W 492

Query: 455 GALLGACKIHENVELAEYACSH-----LLELE-----PENHGALVLLSNIYAKTGKWDNV 504
            A++G         LA+  C H      L+++     P++   L LL N +  T   + V
Sbjct: 493 NAMMGG--------LAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL-NTHGSTDALEWV 543

Query: 505 SELRKHMRVSGL 516
           +E+ KH   +GL
Sbjct: 544 NEVHKHAVETGL 555



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 214/501 (42%), Gaps = 90/501 (17%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           ++ +K++H+  +  GL  D    + L    A     S++ AR +FD + + ++++W  +I
Sbjct: 336 LEWVKEVHSHAVNAGLALDLRVGNALVHMYA--KSGSIDDARVVFDGMTERDIFSWTVMI 393

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA--RLVQFRVGQAIHGMVIKS 168
              +      ++F +FLQ+  N    PN  T+  ++ A+A          + +H    ++
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGC-LPNLTTYLSILNASAIASTSALEWVKVVHKHAEEA 452

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F  DL I N+LIH YA CG +  A  VF  +  +DV+SWN+M+ G  Q G   +A  ++
Sbjct: 453 GFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVF 512

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            +M+ E + PD  T +++L+       LE   W NE                        
Sbjct: 513 LQMQQEGLVPDSTTYLSLLNTHGSTDALE---WVNE------------------------ 545

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
                          +H    + G+  +  + ++ I MY +CG++D A  +F  +  R V
Sbjct: 546 ---------------VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHV 590

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA---------------- 392
             W+ MI G A   CGREAL LF +MQ     P+A TF N+L A                
Sbjct: 591 TTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH 650

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKH---------------YTCMVDMLGRAGLLDE 437
            + +GLVD      N +   Y     VK+               +T M+  L + G   +
Sbjct: 651 ATDAGLVD--LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHD 708

Query: 438 AVEFIEKM---PIVPGASVWGALLGACKIHENVELAE----YACSHLLELEPENHGALVL 490
           A     +M    IVP A+ + ++L AC     +E  +    +A S  L  +     ALV 
Sbjct: 709 AFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALV- 767

Query: 491 LSNIYAKTGKWDNVSELRKHM 511
             ++YAK G  D+   +   M
Sbjct: 768 --HMYAKCGSIDDARSVFDDM 786



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 195/431 (45%), Gaps = 66/431 (15%)

Query: 42  FSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMF 95
            S++K C    N+K  K+IH  ++++G   D    + L   +  C      S+E A+ +F
Sbjct: 223 LSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG-----SIEDAQLIF 277

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++ + N+ +W  +I   +      ++F +FLQ+     + PN +T+  ++ A A     
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQM-QREGFIPNSYTYVSILNANASAGAL 336

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
              + +H   + +    DL + N+L+H YA  G +  A  VF  + ++D+ SW  MI G 
Sbjct: 337 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGL 396

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G  ++A  L+                                           LQ+ 
Sbjct: 397 AQHGRGQEAFSLF-------------------------------------------LQMQ 413

Query: 276 KN-VNPDEFTFVSVL--SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +N   P+  T++S+L  SA A   A++    +H   ++ G   +  +  +LI MY KCG+
Sbjct: 414 RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGS 473

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +D A  VF  +  RDV  W+ M+ G A  GCG EA  +F +MQ+  + P++ T+ ++L  
Sbjct: 474 IDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNT 533

Query: 393 CSHSGLVDEGRMFFNQMEP---VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
              +  ++    + N++       G++   +  +  + M  R G +D+A    +K+  V 
Sbjct: 534 HGSTDALE----WVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLS-VR 588

Query: 450 GASVWGALLGA 460
             + W A++G 
Sbjct: 589 HVTTWNAMIGG 599



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 44/327 (13%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + F++  +++   +     + + +H  +IKS  E +L+++N L+  Y  CG L  A  VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             + KK++  W +MI G+ + G  E A+ +Y +M  E  +P+E+T +++L AC    +L+
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
           +G+                                          +IHA + + G + + 
Sbjct: 237 WGK------------------------------------------KIHAHIIQSGFQSDV 254

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            + T+L++MY KCG+++ A  +F  +  R+V  W+ MI G A YG G+EA  LF +MQ  
Sbjct: 255 RVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQRE 314

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
              PN+ T+ ++L A + +G ++  +   +      G+   ++    +V M  ++G +D+
Sbjct: 315 GFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDD 373

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIH 464
           A    + M      S W  ++G    H
Sbjct: 374 ARVVFDGMTERDIFS-WTVMIGGLAQH 399



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++++ + +  D F++V++L  C +   + +  Q+H  + K G++ N Y+   L+ +Y +C
Sbjct: 107 KIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRC 166

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G L  A +VF  +  +++++W+TMI G+A YG   +A+ ++ +M++   +PN +T+ ++L
Sbjct: 167 GRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSIL 226

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC     +  G+     +    G    V+  T +V+M  + G +++A    +KM +   
Sbjct: 227 KACCCPVNLKWGKKIHAHIIQ-SGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM-VERN 284

Query: 451 ASVWGALLGACKIHENVELAEYA----CSHL-LELEPE----NHGALVLLSNIYAKTGKW 501
              W  ++G         LA Y       HL L+++ E    N    V + N  A  G  
Sbjct: 285 VISWTVMIGG--------LAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 502 DNVSELRKHMRVSGL 516
           + V E+  H   +GL
Sbjct: 337 EWVKEVHSHAVNAGL 351



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 52/278 (18%), Positives = 110/278 (39%), Gaps = 53/278 (19%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++  C +   L   K++H   +  GL  D    + L   +  C      S++ AR +FD
Sbjct: 730 SILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCG-----SIDDARSVFD 784

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            + + ++++W  +I   +     +++   F+++  +  + PN +++  V+ A +      
Sbjct: 785 DMVERDVFSWTVMIGGLAQHGRGLEALDFFVKM-KSEGFKPNGYSYVAVLTACSH----- 838

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G    G     S   D  I  ++ H+           C+  ++G+              
Sbjct: 839 AGLVDEGRRQFLSMTQDYGIEPTMEHYT----------CMVDLLGR-------------- 874

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G  E+A      M +E   PD+    A+L AC    +LE   +  +       L+L  
Sbjct: 875 -AGLLEEAELFILNMPIE---PDDAPWGALLGACVTYGNLEMAEFAAK-----ERLKLKP 925

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                  T+V + +  A  G  +  + + + M+++GI+
Sbjct: 926 KSAS---TYVLLSNIYAATGKWEQKLLVRSMMQRKGIR 960


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 348/639 (54%), Gaps = 65/639 (10%)

Query: 38  PHPVFSLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPC--------ALGT-- 84
           P  + + +K C  +        +H   +R+G F D ++A+ L   C          GT  
Sbjct: 49  PASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNG 108

Query: 85  --------FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
                    ++ E  R++FD++ + +  +WNTLI   +      Q  +  ++ ++   + 
Sbjct: 109 PSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRH-QEALSMVREMWRDGFM 167

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT   V+   A     + G  +HG  IK+ F++D+F+ +SLI  YA C  +  +  V
Sbjct: 168 PDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV 227

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F      D V WNSM++G+ Q G  E                                  
Sbjct: 228 FDSFSDCDAVLWNSMLAGYAQNGSVE---------------------------------- 253

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EAL IF  + L   V P   TF S++ A   L  + +G Q+HA + +     N
Sbjct: 254 -------EALGIFRRM-LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            ++++SLIDMY KCGN+D A  VF+ ++S D+  W+ MI G+A++G   EA  LF RM+ 
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 365

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             VKPN +TF  VL ACSH+GLVD G  +FN M   YG VP ++H   + D LGRAG LD
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 425

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA  FI +M I P +SVW  LL AC++H+N  LAE     + ELEP++ G+ V+LSN+Y+
Sbjct: 426 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            +G+W+  ++LRK MR+ G+KKEP CS IEV  ++H F+A + SHP    I   L+    
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSE 545

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           ++   GYVPN   +LQ +EEE  +E  L  HSE+LAI +G+IS  P   IR++KNLRVC 
Sbjct: 546 QMIRQGYVPNMEDVLQDIEEEQKRE-VLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCV 604

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   K ISK+  REI++RD  RFH F+ GNCSC D+W
Sbjct: 605 DCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 37/234 (15%)

Query: 265 ALSIFHELQLSKNVNPDEFTFVSV---LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           A+S+F  LQ+  +V P      S+   L +CA LG   +   +HA   + G   + +   
Sbjct: 31  AISLF--LQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTAN 88

Query: 322 SLIDMYTKC---------------GNLDKAL-----EVFHTVKSRDVFVWSTMIAGFAMY 361
           +L+++  K                G L+ A      +VF  +  RD   W+T+I G A +
Sbjct: 89  ALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEH 148

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVL-----CACSHSGLVDEGRMFFNQMEPVYGVV 416
              +EAL +   M      P+  T + VL     CA    G+V  G    N      G  
Sbjct: 149 KRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKN------GFD 202

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             V   + ++DM      +D +++  +       A +W ++L     + +VE A
Sbjct: 203 NDVFVGSSLIDMYANCTQMDYSMKVFDSFSDC-DAVLWNSMLAGYAQNGSVEEA 255


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/570 (39%), Positives = 337/570 (59%), Gaps = 46/570 (8%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           + YAR++FD++ +P  + WNT+++ Y  +  P ++  ++ ++ +     P+ FTFPFVIK
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVR-PDPFTFPFVIK 143

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A L +   G  +HG V+K   E    +   L+  Y   G+L  A  +F  + ++D+V+
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN++I+  VQ GF  KA                                         L 
Sbjct: 204 WNALIAVCVQTGFSSKA-----------------------------------------LQ 222

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
            F E+ ++  + PD  T VS LSAC  LG ++ G +I+   +++GI  N  +  + +DM 
Sbjct: 223 SFREMGMA-GIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMC 281

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++DKA+ +F  +  R+V  WST+I G+A+ G   +AL LFSRM+   V+PN VTF 
Sbjct: 282 AKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFL 341

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPV--YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            VL ACSH+G V+EG  +FN M       + P  +HY CMVD+LGR+G L+EA  FI+ M
Sbjct: 342 AVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIM 401

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           PI     +WGALLGAC IH+N++L ++    L EL PE     VLLSN+YA  G+W  V 
Sbjct: 402 PIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVE 461

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R+ M+  G +K    SS+E NGEIH    G+ SHP    I +KL++++ ++KS GY+P
Sbjct: 462 KVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIP 521

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
               +   VE+E+ +E  L+ HSE+LAIA+ LI+  P  PIR++KNLR+CGDCHT  KL+
Sbjct: 522 ETDSVFHDVEDEE-KESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLV 580

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S++  REI++RD+ RFHHF+ G CSC D+W
Sbjct: 581 SRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 358/621 (57%), Gaps = 57/621 (9%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +++ +C   + I++ +++H  M++T      Y  ++L   +  C      SL  AR +FD
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKC-----DSLRDARHVFD 117

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P+ N+ +W  +I AYS      Q+  +F+Q++  S   PNEFTF  V+ +      F 
Sbjct: 118 VMPERNVVSWTAMISAYSQRGYASQALSLFVQML-RSGTEPNEFTFATVLTSCIGSSGFV 176

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ IH  +IK ++E  +++ +SL+  YA  G +  A  +F  + ++DVVS  ++ISG+ 
Sbjct: 177 LGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA 236

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL +F  LQ  +
Sbjct: 237 QLGLDE-----------------------------------------EALELFRRLQ-RE 254

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            +  +  T+ SVL+A + L A+D G Q+H  + +  +     L  SLIDMY+KCGNL  A
Sbjct: 255 GMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYA 314

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSH 395
             +F T+  R V  W+ M+ G++ +G GRE L+LF+ M  E KVKP++VT   VL  CSH
Sbjct: 315 RRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSH 374

Query: 396 SGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            GL D+G  +F++       V P  KHY C+VDMLGRAG ++ A EF++KMP  P A++W
Sbjct: 375 GGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIW 434

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G LLGAC +H N+++ E+    LL++EPEN G  V+LSN+YA  G+W++V  LR  M   
Sbjct: 435 GCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKK 494

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            + KEPG S IE++  +H F A + SHP  +E+ +K+ E+ AR K  GYVP+ S +L  V
Sbjct: 495 AVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDV 554

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE  +E+ L  HSE+LA+ +GLI+   S PIR++KNLR+C DCH  AK  SK+Y RE+ 
Sbjct: 555 DEEQ-KEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVS 613

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD+ RFH   GG CSC DYW
Sbjct: 614 LRDKNRFHRIVGGKCSCGDYW 634


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/642 (38%), Positives = 366/642 (57%), Gaps = 78/642 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY----------------SASKLFTPCA--- 81
           L+K C   K  ++ +QIH  +L+ G   D Y                 A K+F   +   
Sbjct: 109 LLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168

Query: 82  -------LGTFSSLEY---AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
                  +  ++S  Y   A++MFD+IP  ++ +WN LI  Y+ +    ++  +F +++ 
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM- 227

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y  CG++ 
Sbjct: 228 KTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTH-------MNLYKE--------------------- 319

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L    +P+E T +S+L ACA LGA+DIG  IH  + K 
Sbjct: 320 -------------ALLLFQEM-LRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR 365

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+     L TSLIDMY KCG+++ A +VF ++ +R +  W+ MI GFAM+G    A D
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FSRM++  ++P+ +TF  +L ACSHSG++D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACK+H NVEL E    +L+++EP+N G+ V
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W+ V++ R  +   G+KK PGCSSIE++  +H+F+ G+  HP  +EIY 
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           KNLRVC +CH   KLISK+Y REI+ RDR RFHHF  G CSC
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 225/459 (49%), Gaps = 77/459 (16%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQ 97
           HP  SL+  CK ++ L+ IH +M++TGL    Y+ SKL     L   F  L YA  +FD 
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDS 62

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I +PNL  WNT+ R ++ S++P+ +  +++ ++ +    PN +TFPF++KA A+   FR 
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLVPNSYTFPFLLKACAKSKAFRE 121

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHF-------------------------------YAI 186
           GQ IHG V+K   + DL++  SLI                                 YA 
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
            G +  A  +F  I  KDVVSWN++ISG+ + G +++A+EL++EM   NVKPDE TMV V
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           LSACA+   +E GR                                          Q+H+
Sbjct: 242 LSACAQSASIELGR------------------------------------------QVHS 259

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            +   G   N  +  +LID+Y KCG ++ A  +F  +  +DV  W+T+I G+      +E
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCM 425
           AL LF  M  +   PN VT  ++L AC+H G +D GR     ++  + GV       T +
Sbjct: 320 ALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSL 379

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +DM  + G ++ A +  + M +    S W A++    +H
Sbjct: 380 IDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMH 417


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/658 (36%), Positives = 362/658 (55%), Gaps = 52/658 (7%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFD 96
           PH + +  K C  +   + +H     +GL  DP+ AS L      LGT  +   AR +FD
Sbjct: 20  PHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGN---ARALFD 76

Query: 97  QIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
            +P+P   +  W+ L+ A+++  +   ++ +  ++  +    PN  T+  ++    R  +
Sbjct: 77  GMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGR 136

Query: 155 FR------------------------------------VGQAIHGMVIKSSFEDDLFISN 178
            R                                    VGQ +HG  +K+    D  +  
Sbjct: 137 ARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVT 196

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
           +LI  Y  CG  A    VF      DV S N++I+G  +     +A+ L++E     V+ 
Sbjct: 197 ALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVEL 256

Query: 239 DEVTMVAVLSACAKK-RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
           + V+  ++++ C +  +DLE       A+  F E+Q ++   P+  T   VL A A + A
Sbjct: 257 NVVSWTSIVACCVQNGKDLE-------AVEFFREMQ-AQGTEPNSVTIPCVLPAFANVAA 308

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +  G   H    ++G   + Y++++L+DMY KCG +  A  +F T+ SR+V  W+ MI G
Sbjct: 309 LMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGG 368

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +AMYG    A+ +F  M + K KP+ VTFT +L AC+ +GL +EGR +F +M   YGV P
Sbjct: 369 YAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSP 428

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
            ++HY CMV +LGRAG LDEA + I  MP  P A +WG+LLG+C++H NV+LAE A   L
Sbjct: 429 RMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKL 488

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
             LEPEN G  VLLSNIYA    WD V+ +R+ M+  GLKKE GCS IE+  ++H  LAG
Sbjct: 489 FHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAG 548

Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597
           + SHP+   I  K++++  +++  G+VP+   +L  VEE++ ++  L +HSE+LA+A GL
Sbjct: 549 DDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQE-KDDILAVHSEKLAVALGL 607

Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IS  P   +R++KNLR+CGDCH   K IS    REI +RD  RFHHF GG CSC D+W
Sbjct: 608 ISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 18/280 (6%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+    P   K+   L    + +A+H +   S    D F+++SL+H Y   G    A  +
Sbjct: 18  PDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 197 FVMIGK--KDVVSWNSMISGFVQGGFFEKAIELYREMEME-NVKPDEVT---MVAVLSAC 250
           F  + +  + VV W+++++     G  E A  L  EM  +  V+P+ +T   +V+ L+  
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
            + RD         AL+  H   L   + PD       LSA   +G + +G Q+H    K
Sbjct: 135 GRARDAVV------ALATMHGEGL---LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVK 185

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            G + +  + T+LIDMY KCG   + + VF      DV   + +IAG +      EAL L
Sbjct: 186 AGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRL 245

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           F    +  V+ N V++T+++  C  +G   E   FF +M+
Sbjct: 246 FKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQ 285


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/646 (38%), Positives = 367/646 (56%), Gaps = 78/646 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C   K   + +QIH Q+L+ G   D Y  + L                        
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 77  ---FTPCALGTFS--SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +  A+++FD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T+  V+ A A      +G+ +H  V    F+ +L I N+LI  Y+ CG++ 
Sbjct: 190 MNVR-PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTH-------MNLYKE--------------------- 280

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK- 310
                        AL +F E+ L     P++ T +SVL ACA LGA+DIG  IH  + K 
Sbjct: 281 -------------ALLLFQEM-LRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR 326

Query: 311 -QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +G+     L TSLIDMY KCG+++ A +VF+++  + +  W+ MI GFAM+G    + D
Sbjct: 327 LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFD 386

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LFSRM++  ++P+ +TF  +L ACSHSG++D GR  F  M   Y + P ++HY CM+D+L
Sbjct: 387 LFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLL 446

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           G +GL  EA E I  M + P   +W +LL ACK+H NVELAE    +L+++EPEN  + +
Sbjct: 447 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYI 506

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSNIYA  G+W++V+ +R  +    +KK PGCSSIEV+  + +F+ G+  HP  +EIY 
Sbjct: 507 LLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYG 566

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   + IV
Sbjct: 567 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 625

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVC +CH   KL+SK+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 626 KNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 227/411 (55%), Gaps = 16/411 (3%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L YA  +F+ I +PN   WNT+IR ++ S++P+ S  +++ +V +    PN +TFPF
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMV-SLGLLPNSYTFPF 69

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++K+ A+   F  GQ IHG V+K  F+ DL++  SLI  Y     L  AY VF     +D
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVS+ ++I+G+   G    A +L+ E+ +++V    V+  A++S  A     E G +  E
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDV----VSWNAMISGYA-----ETGCY-KE 179

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F E+ +  NV PDE T+V+VLSACA  G++++G Q+H+ +   G   N  +  +LI
Sbjct: 180 ALELFEEM-MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI 238

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           D+Y+KCG ++ A  +F  +  +DV  W+T+I G+      +EAL LF  M  +   PN V
Sbjct: 239 DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           T  +VL AC+H G +D GR     ++  + GV       T ++DM  + G ++ A +   
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHL--LELEPENHGALVLLS 492
            M +    S W A++    +H   + +    S +  + +EP++   + LLS
Sbjct: 359 SM-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLS 408


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/681 (35%), Positives = 371/681 (54%), Gaps = 74/681 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREM 94
           V SL+  C +   L   +Q+H+ +++ G+  D         L+  C     S ++ A EM
Sbjct: 317 VASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNC-----SDIKTAHEM 371

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F      N+  WN ++ A+       +SF IF Q+       PN+FT+P +++    +  
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKG-LIPNQFTYPSILRTCTSVGA 430

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             +G+ IH  VIK+ F+ ++++ + LI  YA  G L  A+ +   + + DVVSW ++ISG
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA------------------------- 249
           + Q   F +A++ ++EM    ++ D +   + +SA                         
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 250 -------------CAKKRD--LEFGR--------------------WPNEALSIFHELQL 274
                        C + ++  LEF +                    +  +AL +F ++  
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +K +    FTF S +SA A +  +  G QIHA + K+G   +  ++ +LI  Y KCG+++
Sbjct: 611 AK-LEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIE 669

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A   F  +  ++   W+ MI G++ +G G EA++LF +M++    PN VTF  VL ACS
Sbjct: 670 DARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACS 729

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GLV +G  +F  M   +G+VP   HY C+VD++ RAG L  A +FIE+MPI P A++W
Sbjct: 730 HVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIW 789

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
             LL AC +H+NVE+ E+A  HLLELEPE+    VLLSN+YA +GKWD   + R+ MR  
Sbjct: 790 RTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNR 849

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KKEPG S IEV   +H F  G+  HPL  +IY  L E+  +    GY  +R  LL  V
Sbjct: 850 GVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDV 909

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           E+E  ++  + +HSE+LAI +GL+S+  + PI ++KNLRVC DCH+  K +SK+ NR I+
Sbjct: 910 EQEQ-KDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAII 968

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD YRFHHF GG CSC DYW
Sbjct: 969 VRDAYRFHHFEGGICSCKDYW 989



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 211/482 (43%), Gaps = 70/482 (14%)

Query: 43  SLIKQCKN----IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           S+++ C      I+  +QIH +++  GL   P  ++ L    A      +  AR++FD +
Sbjct: 116 SVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGL--IISARKVFDNL 173

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +  +W  +I  +S +    ++  +F ++ + +  FP  + F  V+    ++  F VG
Sbjct: 174 CTKDSVSWVAMISGFSQNGYEEEAIHLFCEM-HTAGIFPTPYVFSSVLSGCTKIKLFDVG 232

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS----- 213
           + +H +V K     + ++ N+L+  Y+   +   A  VF  +  KD VS+NS+IS     
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 214 GFVQG------------------------------GFFEKAIELYREMEMENVKPDEVTM 243
           GF  G                              G   K  +L+  +    +  D +  
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 244 VAVLSACAKKRDLE-----------------------FGRWPN--EALSIFHELQLSKNV 278
            A+L       D++                       FG+  N  E+  IF ++Q+ K +
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI-KGL 411

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P++FT+ S+L  C  +GA+D+G QIH ++ K G + N Y+ + LIDMY K G LD A  
Sbjct: 412 IPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHV 471

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +  T+   DV  W+ +I+G+A +    EAL  F  M    ++ + + F++ + AC+    
Sbjct: 472 ILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA 531

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +++GR    Q   V G    +     +V +  R G + EA    EK+      S W  L+
Sbjct: 532 LNQGRQIHAQ-SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS-WNGLI 589

Query: 459 GA 460
             
Sbjct: 590 SG 591



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 199/459 (43%), Gaps = 69/459 (15%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPC-ALGTFSSLEYAREMFDQIP 99
           L+  C N   L   K++H ++L+ G   +    +KL     ALG    L+   ++F+ +P
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALG---DLDGVVKVFEDMP 72

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVG 158
             ++ +W+ +I  +       +   +F  ++  +   P E +F  V++A +   +  R  
Sbjct: 73  NRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS-PTEISFASVLRACSGHRIGIRYA 131

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH  +I         ISN LI  YA  G +  A  VF  +  KD VSW +MISGF Q 
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------------------- 259
           G+ E+AI L+ EM    + P      +VLS C K +  + G                   
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 260 --------RWPN--EALSIFHELQLSKNVN------------------------------ 279
                   R PN   A  +F ++Q    V+                              
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD  T  S+LSACA  GA+  G Q+H+ + K GI  +  +  +L+D+Y  C ++  A E+
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F T ++ +V +W+ M+  F       E+  +F +MQ   + PN  T+ ++L  C+  G +
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGAL 431

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           D G     Q+    G    V   + ++DM  + G LD A
Sbjct: 432 DLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTA 469



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 12/228 (5%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALG 83
           +N G Q       S I  C  I+ L   +QIH Q   +G   D    +    L+  C   
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
             + LE     F++I   +  +WN LI  ++ S     +  +F Q+   +    + FTF 
Sbjct: 568 KEAYLE-----FEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQM-NRAKLEASFFTFG 621

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
             + AAA +   + G+ IH M+IK  F+ D+ +SN+LI FYA CG +  A   F  + +K
Sbjct: 622 SAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEK 681

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           + VSWN+MI+G+ Q G+  +A+ L+ +M+     P+ VT V VLSAC+
Sbjct: 682 NDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACS 729



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T++ +L  C   G++    ++H K+ K G      L   L+D+Y   G+LD  ++VF  +
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            +R V  W  +I+GF         LDLFS M E  V P  ++F +VL ACS
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 350/623 (56%), Gaps = 55/623 (8%)

Query: 39  HPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H V + +K C  +  L   + +     + G   D +  + L    A  +   +  A  +F
Sbjct: 172 HTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYA--SCGDVVAAHVLF 229

Query: 96  DQIPQPNLYTWNTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
             +    +  WN +I  Y  +    E ++ F   L++   +P+  +E T   V  A  RL
Sbjct: 230 HTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEV--RAPF--DEVTLLSVATACGRL 285

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +GQ I     +        ++ +L+  YA CG+L  A  +F  +  +DVV+W++MI
Sbjct: 286 GDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMI 345

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           SG+ Q                                C             EAL+IF+E+
Sbjct: 346 SGYTQS-----------------------------DRC------------REALAIFNEM 364

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q    VNP++ T VSVLSACA LGA++ G  +H+ ++++ + L   L T+L+D Y KCG 
Sbjct: 365 Q-GTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGC 423

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +  A++ F ++  R+ + W+ +I G A  G  REAL+LFS M EA ++P  VTF  VL A
Sbjct: 424 IKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLA 483

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH  LV+EGR  F  M   YG+ P ++HY CMVD+LGRAGL+DEA +FI  MPI P A 
Sbjct: 484 CSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAV 543

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VW ALL AC +H+NVE+ E A   ++ L+P + G  +LLSN YA  G+W N + +RK M+
Sbjct: 544 VWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMK 603

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             G++K PGCS IE+ G I +F A +S HP   EIY K+ E++  +K  GY+PN +    
Sbjct: 604 EKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARL 663

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            V+E + ++ +++ HSE+LAIA+GL+   P   IR+ KNLRVC DCH+  KLISK+YNRE
Sbjct: 664 DVDEYE-KQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNRE 722

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFHHF+ G CSC DYW
Sbjct: 723 IIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 205/418 (49%), Gaps = 57/418 (13%)

Query: 51  IKQLKQIHTQMLRTGLFF---DPYSASKLFTPCALGTFSS--LEYAREMFDQIPQP--NL 103
           ++ + Q+H  +L++G      D + +            SS  L YA  +F   P P  + 
Sbjct: 76  LRDVPQLHATLLKSGAMTTSPDSFHSLLEAAALPAPATSSAHLSYAIRLFRLGPHPPRSA 135

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            ++N LIR++  +  P  +  +F++++ ++   P++ T    +K+ +R+    VG+ +  
Sbjct: 136 RSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQA 195

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
              K  F  D F+ NSLIH YA CGD+  A+ +F  +  K V++WN+MI+G+V+ G +++
Sbjct: 196 YAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKE 255

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
            +E+++ M       DEVT+++V +AC +  D   G+W                      
Sbjct: 256 VVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQW---------------------- 293

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                               I    +++G+  +  L T+L+DMY KCG LDKA  +F  +
Sbjct: 294 --------------------IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRM 333

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            SRDV  WS MI+G+      REAL +F+ MQ  +V PN VT  +VL AC+  G ++ G+
Sbjct: 334 HSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGK 393

Query: 404 M---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
               +  + +    V+ G    T +VD   + G + +AV+  E MP V     W AL+
Sbjct: 394 WVHSYIRRKDLPLTVILG----TALVDFYAKCGCIKDAVKAFESMP-VRNTWTWTALI 446


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/637 (34%), Positives = 361/637 (56%), Gaps = 57/637 (8%)

Query: 26  TTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT- 84
           + L  N G +      F+    C++    ++   Q+L   + + P S  +    C LG  
Sbjct: 187 SVLVGNQGRKVSDIEAFNYDVSCRS----REFEAQVLE--IDYKPRSEYREMEACNLGQQ 240

Query: 85  ------FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN 138
                   S++  R++F+ +P+ +L +WNT+I   + +    ++  +  ++   +   P+
Sbjct: 241 IKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM-GGANLKPD 299

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
            FT   V+   A  V    G+ IHG  I+   + ++++++SLI  YA C  +  +Y VF 
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
           ++ ++D +SWNS+I+G VQ G F+                                    
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFD------------------------------------ 383

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
                E L  F ++ ++K + P  ++F S++ ACA L  + +G Q+H  + + G   N +
Sbjct: 384 -----EGLKFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 437

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           + +SL+DMY KCGN+  A ++F  ++ RD+  W+ MI G A++G   +A++LF +M+   
Sbjct: 438 IASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEG 497

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           ++PN V F  VL ACSH+GLVDE   +FN M   +G+ PGV+HY  + D+LGRAG L+EA
Sbjct: 498 IEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEA 557

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
            +FI  MPI P  SVW  LL AC++H+NV++AE   + +LE++P+N GA +LL+NIY+  
Sbjct: 558 YDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAA 617

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
            +W   ++ R  +R +G++K P CS IEV  +++ F+AG+ SHP  ++I   ++ ++  +
Sbjct: 618 RRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELM 677

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           +  GYVP+ S +   VEEE  ++  +  HSERLAI +G+I+      IR+ KNLRVC DC
Sbjct: 678 EKEGYVPDTSEVHHDVEEEQ-KKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDC 736

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           HT  K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 737 HTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 217/498 (43%), Gaps = 73/498 (14%)

Query: 21  RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKLF 77
           R P  T   VN           SL++   +IK   Q +Q+H Q+L+   F      +   
Sbjct: 2   RSPTSTEALVN-----------SLLRNPLSIKSRSQAQQLHAQVLK---FQASSLCNLSL 47

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
                   + L  +  +F+ +  P    W ++IR Y+S   P +S   F+ ++  S  +P
Sbjct: 48  LLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGML-ASGLYP 106

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA---- 193
           +   FP V+KA A L+   +G+++HG +I+   + DL+  N+L++ Y+    L  +    
Sbjct: 107 DHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQR 166

Query: 194 -----------------YCVFVMIGKK-----DVVSWNSMISGFVQGGFFEKAIEL---- 227
                                V++G +     D+ ++N  +S   +  F  + +E+    
Sbjct: 167 LGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSR-EFEAQVLEIDYKP 225

Query: 228 ---YREMEMENVKPDEVTMVAVLSACAKKRDLEF--------------GRWPN----EAL 266
              YREME  N+      +   +S  + ++  E               G   N    E L
Sbjct: 226 RSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETL 285

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
           ++  E+    N+ PD FT  SVL   A+   +  G +IH    +QG+    Y+ +SLIDM
Sbjct: 286 TMVREMG-GANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDM 344

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KC  +  +  VF  +  RD   W+++IAG    G   E L  F +M  AK+KP + +F
Sbjct: 345 YAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSF 404

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           ++++ AC+H   +  G+     +    G    +   + +VDM  + G +  A +  ++M 
Sbjct: 405 SSIMPACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR 463

Query: 447 IVPGASVWGALLGACKIH 464
           +    S W A++  C +H
Sbjct: 464 LRDMVS-WTAMIMGCALH 480


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 359/621 (57%), Gaps = 54/621 (8%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           IK C ++  +   KQ H Q    G   D + +S L       T   LE AR++FD+IP+ 
Sbjct: 83  IKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIV--MYSTCGKLEDARKVFDEIPKR 140

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-----NSPYFPNEFTFPFVIKAAARLVQFR 156
           N+ +W ++IR Y  +   + +  +F  L+      ++  F +      VI A +R+    
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKG 200

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD--LAMAYCVFVMIGKKDVVSWNSMISG 214
           + ++IH  VIK  F+  + + N+L+  YA  G+  +A+A  +F  I  KD VS+NS++S 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G                                           NEA  +F  L  
Sbjct: 261 YAQSGM-----------------------------------------SNEAFDVFRRLIK 279

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            K V  +  T  +VL A +  GA+ IG  IH ++ + G++ +  + TS+IDMY KCG ++
Sbjct: 280 EKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVE 339

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A   F  +K+++V  W+ MIAG+ M+G   +AL+LF  M ++ V+PN +TF +VL ACS
Sbjct: 340 TARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS 399

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GL D G  +FN M+  +GV PG++HY CMVD+LGRAG L +A + I+KM + P + +W
Sbjct: 400 HAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIW 459

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL AC+IH+NVELAE + + L EL+P N G  +LLS+IYA +G+W +V  +R  M+  
Sbjct: 460 SSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNR 519

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GL K PG S +E+NGE+H FL G+  HP  ++IY  L E+  +L   GYV N S +   V
Sbjct: 520 GLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDV 579

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E  L +HSE+LAIA+G+++  P   + +VKNLRVC DCH V KLISK+ +RE +
Sbjct: 580 DEEE-KEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF+ G CSC DYW
Sbjct: 639 VRDAKRFHHFKDGFCSCGDYW 659



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 47/320 (14%)

Query: 43  SLIKQCKNIKQ---LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +      + IH+ +++ G        + L    A G    +  AR++FDQI 
Sbjct: 188 SVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  ++N+++  Y+ S    ++F +F +L+       N  T   V+ A +     R+G+
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGK 307

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  VI+   EDD+ +  S+I  Y  CG +  A   F  +  K+V SW +MI+G+   G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              KA+EL+  M    V+P+ +T V+VL+A                              
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAA------------------------------ 397

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALE 338
                       C+  G  D+G      MK + G++        ++D+  + G L KA +
Sbjct: 398 ------------CSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 339 VFHTVKSR-DVFVWSTMIAG 357
           +   +K   D  +WS+++A 
Sbjct: 446 LIQKMKMEPDSIIWSSLLAA 465


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 339/605 (56%), Gaps = 41/605 (6%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF-SSLEYAREMFDQIPQPNLYTWNTLIR 111
            L+QIH  +LRT L  +       F+  AL      + Y+  +F Q   P L   NT+IR
Sbjct: 26  HLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIR 85

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
           A+S S  P + F +F  L  N  +  N  +  F +K   +      G  IHG +    F 
Sbjct: 86  AFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFL 145

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D  +  +L+  Y+ C +   A  VF  I ++D VSWN +IS +++       + L+ +M
Sbjct: 146 SDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLFDKM 205

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                                K D++                  + V PD  T +  L A
Sbjct: 206 ---------------------KNDVD------------------RCVKPDNVTCLLALQA 226

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CA LGA+D G Q+H  + + G+     L+ +L+ MY++CG++DKA EVF+ ++ R+V  W
Sbjct: 227 CANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSW 286

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI+G AM G G+EA++ F+ M +  + P   T T +L ACSHSGLVDEG MFF++M  
Sbjct: 287 TAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRS 346

Query: 412 -VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             + + P + HY C+VD+LGRA LLD+A   I+ M + P +++W  LLGAC++H NVEL 
Sbjct: 347 GEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELG 406

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E   +HL+E + E  G  VLL N Y+  GKW+ V+ELR  M+   ++  PGCS+IE+ G 
Sbjct: 407 ERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGT 466

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+F+  + SHP  +EIY  L EI  +LK  GYV   +  L  ++ E+ +  AL  HSE+
Sbjct: 467 VHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEK 526

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+G++   P   IR+ KNLR C DCH  AK +S +Y+R +++RDR RFHHF+GG+CS
Sbjct: 527 LAIAFGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCS 586

Query: 651 CMDYW 655
           C D+W
Sbjct: 587 CNDFW 591


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 356/614 (57%), Gaps = 45/614 (7%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK-LFTPCA-LGTFSSLEYAREMFDQIPQP 101
           L+K+C NI + KQ+H + ++  LF     ++  +   CA  G  +S+ YA  +F  I  P
Sbjct: 37  LLKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDP 96

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
             + + T+IR Y +     +  + F   +      P+ FT+P ++KA  RL   R G+ I
Sbjct: 97  CTFDFKTMIRGYVNEM-SFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQI 155

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG V K   E D+F+ NSLI+ Y  CG++ ++  VF  +  K   SW+SM          
Sbjct: 156 HGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSM---------- 205

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
                                     SAC     +  G W +E L +F E+    N+  +
Sbjct: 206 -------------------------FSAC-----VGMGMW-SECLMLFREMCRETNLKAE 234

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           E   VS LSACA  GA+++G+ IH  + +   +LN  + TSL+DMY KCG +D AL +F 
Sbjct: 235 ESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQ 294

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ R+   +S MI+GFA++G G  AL +FS M +  ++P+ V + ++L ACSHSGLV E
Sbjct: 295 KMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKE 354

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR  F +M     V P  +HY C+VD+LGRAGLL+EA+E I+ +PI     VW + L  C
Sbjct: 355 GRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQC 414

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H+N+EL + A   LL+L   N G  +L+SN+Y++   WD+V+  R  + + GLK+ PG
Sbjct: 415 RVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPG 474

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            S+++V G+ H+F++ + SHP CKEIY  L ++  +LK  GY P+ + +L  V+EE+ +E
Sbjct: 475 FSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKE 534

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           + L  HS+++AIA+ L+   P   I+I +NLR+C DCHT  K IS +Y REI++RDR RF
Sbjct: 535 R-LKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRF 593

Query: 642 HHFRGGNCSCMDYW 655
           H F+GG CSC DYW
Sbjct: 594 HLFKGGTCSCKDYW 607


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/640 (37%), Positives = 367/640 (57%), Gaps = 40/640 (6%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP---------- 79
             NG+      +F  +  CKN      +    ++ G   D   A +LF            
Sbjct: 72  AQNGYVKEAKEIFDEMP-CKNSISWNGMLAAYVQNGRIED---ARRLFESKADWELISWN 127

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C +G +   + L  AR +FD++P+ +  +WNT+I  Y+ + E +++  +F +    SP  
Sbjct: 128 CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE----SP-V 182

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            + FT+  ++    +       + +  GM  K+S        N++I  Y  C  +  A  
Sbjct: 183 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARE 237

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           +F  +  ++V SWN+MI+G+ Q G   +A   +  M     + D ++  A+++  A+   
Sbjct: 238 LFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP----QRDSISWAAIIAGYAQSG- 292

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                +  EAL +F E++       +  TF S LS CA++ A+++G Q+H ++ K G++ 
Sbjct: 293 -----YGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 346

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
            CY+  +L+ MY KCGN+D A  VF  ++ ++V  W+TMIAG+A +G G+EAL LF  M+
Sbjct: 347 GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK 406

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           +  + P+ VT   VL ACSH+GLVD+G  +F  M   YG+    KHYTCM+D+LGRAG L
Sbjct: 407 KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRL 466

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           D+A   ++ MP  P A+ WGALLGA +IH N EL E A   + E+EP+N G  VLLSN+Y
Sbjct: 467 DDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLY 526

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A +G+W +V  +R  MR  G+KK PG S +EV  +IH F  G+S HP    IY+ L+E+ 
Sbjct: 527 AASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELD 586

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            ++K  GYV +   +L  VEEE+ +   L  HSE+LA+A+G++++   +PIR++KNLRVC
Sbjct: 587 LKMKKEGYVSSTKLVLHDVEEEE-KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVC 645

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCH   K ISK+  R I+LRD +RFHHF GG CSC DYW
Sbjct: 646 EDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/627 (37%), Positives = 352/627 (56%), Gaps = 44/627 (7%)

Query: 43   SLIKQCKNIKQLK---QIHTQMLRTG-LFFDPYSASKL---FTPCALGTFSSLEYAREMF 95
            S++  C  +++L+   +IH   LR G L  + +  + L   +  C        +  R +F
Sbjct: 539  SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNC-----KQPKKGRLVF 593

Query: 96   DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            D + +  +  WN L+  Y+ +    Q+  +F++++  S + PN  TF  V+ A  R   F
Sbjct: 594  DGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVF 653

Query: 156  RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
               + IHG ++K  F  D ++ N+L+  Y+  G + ++  +F  + K+D+VSWN+MI+G 
Sbjct: 654  SDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGC 713

Query: 216  VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +  G ++ A+ L  EM+    +    T V                         +E    
Sbjct: 714  IVCGRYDDALNLLHEMQRRQGEDGSDTFVD------------------------YEDDGG 749

Query: 276  KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                P+  T ++VL  CA L A+  G +IHA   KQ + ++  + ++L+DMY KCG L+ 
Sbjct: 750  VPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNL 809

Query: 336  ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK------VKPNAVTFTNV 389
            A  VF  +  R+V  W+ +I  + M+G G EAL+LF  M          ++PN VT+  +
Sbjct: 810  ASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAI 869

Query: 390  LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI-V 448
              ACSHSG+VDEG   F+ M+  +GV P   HY C+VD+LGR+G + EA E I  MP  +
Sbjct: 870  FAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNL 929

Query: 449  PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
                 W +LLGAC+IH++VE  E A  HL  LEP      VL+SNIY+  G WD    +R
Sbjct: 930  NKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVR 989

Query: 509  KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
            K M+  G++KEPGCS IE   E+HKFL+G++SHP  KE++  L+ +  R++  GYVP+ S
Sbjct: 990  KKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDIS 1049

Query: 569  HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
             +L  V++E+ +E  L  HSERLAIA+GL++  P   IR+ KNLRVC DCH   K+ISK+
Sbjct: 1050 CVLHNVDDEE-KETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKI 1108

Query: 629  YNREILLRDRYRFHHFRGGNCSCMDYW 655
             +REI+LRD  RFHHF  G CSC DYW
Sbjct: 1109 VDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 186/428 (43%), Gaps = 80/428 (18%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W  L+R+ + S+    +   +  ++       N F FP V+KAAA +    +G+ IH  V
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDN-FAFPAVLKAAAAVHDLCLGKQIHAHV 356

Query: 166 IKSSFE--DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            K        + ++NSL++ Y  CGDL  A  VF  I  +D VSWNSMI+   +   +E 
Sbjct: 357 FKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWEL 416

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKR-----------------DL---------- 256
           ++ L+R M  ENV P   T+V+V  AC+  R                 DL          
Sbjct: 417 SLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVT 476

Query: 257 ---EFGRWPNEALSIFHELQ-------------LSKN-----------------VNPDEF 283
                GR  N+A ++F                 LS+N                 V PD  
Sbjct: 477 MYARLGR-VNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGV 535

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHT 342
           T  SVL AC+QL  + IG +IH    + G  + N ++ T+L+DMY  C    K   VF  
Sbjct: 536 TLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDG 595

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDE 401
           V  R V VW+ ++AG+A      +AL LF  M  E++  PNA TF +VL AC    +   
Sbjct: 596 VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKV--- 652

Query: 402 GRMFFNQMEPVYGVVP----GVKHY--TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
               F+  E ++G +     G   Y    ++DM  R G ++ +     +M      S W 
Sbjct: 653 ----FSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVS-WN 707

Query: 456 ALLGACKI 463
            ++  C +
Sbjct: 708 TMITGCIV 715



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 192/444 (43%), Gaps = 74/444 (16%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
            ++  KQ+H   LR G     Y+ + L T  A      +  A+ +F      +L +WNT+
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYA--RLGRVNDAKALFGVFDGKDLVSWNTV 505

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           I + S + +  +  ++++ L+      P+  T   V+ A ++L + R+G+ IH   +++ 
Sbjct: 506 ISSLSQN-DRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNG 564

Query: 170 -FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
              ++ F+  +L+  Y  C        VF  + ++ V  WN++++G+ +  F ++A+ L+
Sbjct: 565 DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLF 624

Query: 229 REMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
            EM  E+   P+  T  +VL AC + +             +F + +              
Sbjct: 625 VEMISESEFCPNATTFASVLPACVRCK-------------VFSDKE-------------- 657

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
                           IH  + K+G   + Y+  +L+DMY++ G ++ +  +F  +  RD
Sbjct: 658 ---------------GIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRD 702

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAK------------------VKPNAVTFTNV 389
           +  W+TMI G  + G   +AL+L   MQ  +                   KPN+VT   V
Sbjct: 703 IVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTV 762

Query: 390 LCACSHSGLVDEGR---MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           L  C+    + +G+    +  + +    V  G    + +VDM  + G L+ A    ++MP
Sbjct: 763 LPGCAALAALGKGKEIHAYAVKQKLAMDVAVG----SALVDMYAKCGCLNLASRVFDQMP 818

Query: 447 IVPGASVWGALLGACKIHENVELA 470
           I      W  L+ A  +H   E A
Sbjct: 819 I-RNVITWNVLIMAYGMHGKGEEA 841


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 337/576 (58%), Gaps = 14/576 (2%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A G +  LE  R   D + +PN+ TWN L+   + S     + +  +++ +   + P+  
Sbjct: 102 AEGAWGLLERMRS--DGV-EPNVITWNGLVSGLNRSGRARDAVLALVRM-HGEGFLPDAT 157

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
                + A   +    VG+ +HG V+K+    D  ++ +LI  Y  CG       VF   
Sbjct: 158 GVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDES 217

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK-RDLEFG 259
              DV S N++++G  +     +A+ L+RE     ++ + V+  ++++ C +  RDLE  
Sbjct: 218 SHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLE-- 275

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                A+ +F E+Q S+ + P+  T   VL A A + A+  G   H    ++G   + Y+
Sbjct: 276 -----AVDLFREMQ-SEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYV 329

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            ++L+DMY KCG +  A  +F  +  R+V  W+ MI G+AM+G    A+ LF  MQ +K 
Sbjct: 330 GSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKE 389

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           KP+ VTFT VL ACS +G  +EGR +FN+M+  +G+ P ++HY CMV +LGRAG LD+A 
Sbjct: 390 KPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAY 449

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           + I +MP  P   +WG+LLG+C++H NV LAE A  +L +LEPEN G  VLLSNIYA   
Sbjct: 450 DIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKK 509

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
            WD V+ LR  M+  GLKKE GCS IE+  ++H  LAG+SSHP+   I  KL  +   ++
Sbjct: 510 MWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMR 569

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             G+ P+  ++L  VEE++ ++  L++HSE+LA+A GLIS     P++++KNLR+CGDCH
Sbjct: 570 RLGFAPSTDYVLHDVEEQE-KDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCH 628

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              K IS    REI +RD  RFHHF+ G CSC DYW
Sbjct: 629 EAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 42/332 (12%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D F+++SL+H Y   G  A A  V   +  + VV W+++I+     G  E A  L   M 
Sbjct: 54  DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMR 113

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            + V+P+ +T   ++S   +      GR  +  L++       +   PD       LSA 
Sbjct: 114 SDGVEPNVITWNGLVSGLNRS-----GRARDAVLALVR--MHGEGFLPDATGVSCALSAV 166

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
             +G + +G Q+H  + K G +L+  + T+LIDMY KCG  D+ + VF      DV   +
Sbjct: 167 GDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCN 226

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME-- 410
            ++AG +      EAL LF       ++ N V++T+++  C  +G   E    F +M+  
Sbjct: 227 ALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE 286

Query: 411 -------------PVYGVVPGVKH-------------------YTCMVDMLGRAGLLDEA 438
                        P +  +  + H                    + +VDM  + G + +A
Sbjct: 287 GIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDA 346

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELA 470
               E MP     S W A++G   +H   E A
Sbjct: 347 RMIFEAMPYRNVVS-WNAMIGGYAMHGEAENA 377



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
           G+  + ++ +SL+  Y + G    A  V   +  R V  WS +IA  A +G    A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            RM+   V+PN +T+  ++   + SG   +  +   +M    G +P     +C +  +G 
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG-EGFLPDATGVSCALSAVGD 168

Query: 432 AG 433
            G
Sbjct: 169 VG 170


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 351/610 (57%), Gaps = 43/610 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI- 110
           KQ+H +++R+    DPY AS   +L+  C      S + A+ +F+ +   N  +W  LI 
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYAKCG-----SFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 111 -----RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
                  +S S E        L  +       ++F    +I      +   +G+ +H + 
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAI-------DQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +KS     + +SNSLI  YA CGDL  A  VF  + ++D+VSW SMI+ + Q G   KA 
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           E +  M+  N     +T  A+L A  +    E G      L ++  +   K+V PD  T+
Sbjct: 458 EFFDGMDTRNA----ITWNAMLGAYIQHGAEEDG------LKMYSAMLSQKDVTPDWVTY 507

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           V++   CA +GA  +G QI     K G+ LN  +  + I MY+KCG + +A ++F  +  
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +DV  W+ MI G++ +G G++A   F  M     KP+ +++  VL  CSHSGLV EG+++
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ M  V+G+ PG++H++CMVD+LGRAG L EA + I+KMP+ P A VWGALL ACKIH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           N ELAE A  H+ EL+  + G+ +LL+ IY+  GK D+ +++RK MR  G+KK PG S +
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV  ++H F A + SHP    I +KLDE++ ++   GYV   S   ++            
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEI------------ 795

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+A+G++S+    PI I+KNLR+CGDCHTV KLIS + +RE ++RD  RFHHF+
Sbjct: 796 HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFK 855

Query: 646 GGNCSCMDYW 655
            G+CSC DYW
Sbjct: 856 SGSCSCGDYW 865



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 191/404 (47%), Gaps = 42/404 (10%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           SL  A E+FD++P+ ++ +WNTL+  Y  +   +     F+ +  +    PN FTF  V+
Sbjct: 86  SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           K+   L    +   + G+  K  F  D  +  +L+  +  CG +  A  +F  I +  + 
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
             NSM++G+ +    + AIE + +M   +V    + M+A LS   + R         EAL
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM-MIAALSQSGRVR---------EAL 255

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +  E+   K V  D  T+ S L+ACA+L ++  G Q+HAK+ +   +++ Y+ ++LI++
Sbjct: 256 GLVVEMH-RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG+  +A  VF++++ R+   W+ +I G   Y C  ++++LF++M+   +  +    
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 387 TNVLCAC-----------SHSGLVDEGR----MFFNQMEPVYGVVPGVKH---------- 421
             ++  C            HS  +  G     +  N +  +Y     +++          
Sbjct: 375 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434

Query: 422 -----YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                +T M+    + G + +A EF + M     A  W A+LGA
Sbjct: 435 RDIVSWTSMITAYSQIGNIIKAREFFDGMD-TRNAITWNAMLGA 477



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 19/380 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E F+ + + ++ +WN +I A S S    ++  + +++ +      +  T+   + 
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLT 278

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL     G+ +H  VI+S  + D +++++LI  YA CG    A  VF  +  ++ VS
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 338

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I G +Q   F K++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 339 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ------ 392

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L    N       S++S  A+ G +     + + M ++ I       TS+I  Y
Sbjct: 393 -LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI----VSWTSMITAY 447

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTF 386
           ++ GN+ KA E F  + +R+   W+ M+  +  +G   + L ++S M   K V P+ VT+
Sbjct: 448 SQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G           G++  V      + M  + G + EA +  +   
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFD--- 563

Query: 447 IVPGASV--WGALLGACKIH 464
           ++ G  V  W A++     H
Sbjct: 564 LLNGKDVVSWNAMITGYSQH 583



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 143/341 (41%), Gaps = 48/341 (14%)

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWNSMISGFVQ 217
           +A+HG ++       +F+ N+L+H Y  CG L+ A  +    I + +V++ N M++G+ +
Sbjct: 24  RALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAK 83

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A EL+  M   +V      M     A   +R L       + L  F  +  S +
Sbjct: 84  QGSLSDAEELFDRMPRRDVASWNTLMSGYFQA---RRFL-------DGLETFVSMHRSGD 133

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG------ 331
             P+ FTF  V+ +C  LG  ++  Q+     K     +  + T+L+DM+ +CG      
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFAS 193

Query: 332 -------------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
                                     +D A+E F  +  RDV  W+ MIA  +  G  RE
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TC 424
           AL L   M    V+ ++ T+T+ L AC+    +  G+    +   V   +P +  Y  + 
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK---VIRSLPQIDPYVASA 310

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           ++++  + G   EA      +      S W  L+G    +E
Sbjct: 311 LIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVLIGGSLQYE 350



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 40/198 (20%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT- 342
                L +C   GA+     +H ++   G+    +L  +L+  Y  CG L  A  +    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK---------------------- 380
           +K  +V   + M+ G+A  G   +A +LF RM    V                       
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 381 ----------PNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
                     PNA TF  V+ +C   G   L  +    F + +  +   P V+  T +VD
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD--FWGDPDVE--TALVD 181

Query: 428 MLGRAGLLDEAVEFIEKM 445
           M  R G +D A     ++
Sbjct: 182 MFVRCGYVDFASRLFSQI 199


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/678 (34%), Positives = 367/678 (54%), Gaps = 72/678 (10%)

Query: 43   SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFD 96
            +++K C N   L+    +H+  +R G   D + +     +++ C L        A ++F 
Sbjct: 335  TVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG-----DALKVFV 389

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +I  P++ +W+ +I       +  ++  +F ++ + S   PN+FT   ++ AA  L    
Sbjct: 390  RIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH-SGVIPNQFTLASLVSAATDLGDLY 448

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             G++IH  V K  FE D  + N+L+  Y   G +     VF     +D++SWN+++SGF 
Sbjct: 449  YGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFH 508

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG----------------- 259
                 +  + ++ +M  E   P+  T +++L +C+   D++ G                 
Sbjct: 509  DNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF 568

Query: 260  ------------RWPNEALSIFHEL-----------------------------QLSK-N 277
                        R+  +A +IF+ L                             Q+ +  
Sbjct: 569  VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 278  VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
            V P+EFT  S LS C+++  +D G Q+H+   K G   + ++ ++L+DMY KCG ++ A 
Sbjct: 629  VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 338  EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
             VF  + SRD   W+T+I G++ +G G +AL  F  M +    P+ VTF  VL ACSH G
Sbjct: 689  VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 748

Query: 398  LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            L++EG+  FN +  +YG+ P ++HY CMVD+LGRAG   E   FIE+M +     +W  +
Sbjct: 749  LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETV 808

Query: 458  LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
            LGACK+H N+E  E A   L ELEPE     +LLSN++A  G WD+V+ +R  M   G+K
Sbjct: 809  LGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 868

Query: 518  KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            KEPGCS +EVNG++H FL+ + SHP  +EI+ KL ++  +L S GY PN  H+L  V + 
Sbjct: 869  KEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDR 928

Query: 578  DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            + QE  L  HSERLA+A+ L+S    + IRI KNLR+CGDCH   K IS++ N+E+++RD
Sbjct: 929  EKQE-LLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRD 987

Query: 638  RYRFHHFRGGNCSCMDYW 655
               FHHF+ G+CSC ++W
Sbjct: 988  INCFHHFKNGSCSCQNFW 1005



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 212/454 (46%), Gaps = 71/454 (15%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           C +++  KQ+H + ++ G F D +  S    L+  C       +  A  +F  +P+ N  
Sbjct: 242 CLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG-----EMVLAERVFLCMPKQNAV 296

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WN L+  ++   +  +   +F ++  +   F ++FT   V+K  A     R GQ +H +
Sbjct: 297 SWNALLNGFAQMGDAEKVLNLFCRMTGSEINF-SKFTLSTVLKGCANSGNLRAGQIVHSL 355

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
            I+   E D FIS  L+  Y+ CG    A  VFV I   DVVSW+++I+   Q G   +A
Sbjct: 356 AIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREA 415

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------------------------ 260
            E+++ M    V P++ T+ +++SA     DL +G                         
Sbjct: 416 AEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTM 475

Query: 261 ------------------------WPNEALSIFHELQ------------LSKNVNPDEFT 284
                                   W N  LS FH+ +            L++  NP+ +T
Sbjct: 476 YMKIGSVQDGCRVFEATTNRDLISW-NALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYT 534

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F+S+L +C+ L  +D+G Q+HA++ K  +  N ++ T+L+DMY K   L+ A  +F+ + 
Sbjct: 535 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 594

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RD+F W+ ++AG+A  G G +A+  F +MQ   VKPN  T  + L  CS    +D GR 
Sbjct: 595 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 654

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
             + M    G    +   + +VDM  + G +++A
Sbjct: 655 -LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 51/351 (14%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           ++ + K IH Q++++G+  D +   S   ++  C      S  YA ++F +IP+ ++ +W
Sbjct: 143 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG-----SANYACKVFGEIPERDVVSW 197

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
             LI  + +      +  +F ++        NEFT+   +KA +  +    G+ +H   I
Sbjct: 198 TALITGFVAEGYGSGAVNLFCEM-RREGVEANEFTYATALKACSMCLDLEFGKQVHAEAI 256

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K     DLF+ ++L+  YA CG++ +A  VF+ + K++ VSWN++++GF Q G  EK + 
Sbjct: 257 KVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLN 316

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+  M    +   + T+  VL  CA   +L  G+       I H L +      DEF   
Sbjct: 317 LFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQ-------IVHSLAIRIGCELDEF--- 366

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
             +S C                              L+DMY+KCG    AL+VF  ++  
Sbjct: 367 --ISCC------------------------------LVDMYSKCGLAGDALKVFVRIEDP 394

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           DV  WS +I      G  REA ++F RM+ + V PN  T  +++ A +  G
Sbjct: 395 DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 44/317 (13%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +  +++  A       G+AIHG VIKS    D  + NSL++ YA CG    A  VF  I 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++DVVSW ++I+GFV  G+   A+ L+ EM  E V+ +E T    L AC+   DLEFG+ 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK- 249

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                                    Q+HA+  K G   + ++ +
Sbjct: 250 -----------------------------------------QVHAEAIKVGDFSDLFVGS 268

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+D+Y KCG +  A  VF  +  ++   W+ ++ GFA  G   + L+LF RM  +++  
Sbjct: 269 ALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINF 328

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +  T + VL  C++SG +  G++  + +    G         C+VDM  + GL  +A++ 
Sbjct: 329 SKFTLSTVLKGCANSGNLRAGQI-VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 442 IEKMPIVPGASVWGALL 458
             ++   P    W A++
Sbjct: 388 FVRIED-PDVVSWSAII 403



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           G   + +   S+++ C ++  +   KQ+H Q+++  L  + +  + L    A   F  LE
Sbjct: 527 GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF--LE 584

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            A  +F+++ + +L+ W  ++  Y+   +  ++   F+Q+       PNEFT    +   
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM-QREGVKPNEFTLASSLSGC 643

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           +R+     G+ +H M IK+    D+F++++L+  YA CG +  A  VF  +  +D VSWN
Sbjct: 644 SRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWN 703

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           ++I G+ Q G   KA++ +  M  E   PDEVT + VLSAC+    +E G+    +LS
Sbjct: 704 TIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 761


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 350/628 (55%), Gaps = 59/628 (9%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  +E AR++FD++P+ +   WNT+I  Y  +   ++S  +F  L+  S    +  T   
Sbjct: 167 FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLD 226

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++ A A L + R+G  IH +  K+      ++    I  Y+ CG + M   +F    K D
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV-------------------- 244
           +V++N+MI G+   G  E ++ L++E+ +   +    T+V                    
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346

Query: 245 ------------AVLSACAKKRDLEFGR-------------W------------PNEALS 267
                       A+ +  +K  ++E  R             W              +A+S
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+Q S+  +P+  T   +LSACAQLGA+ +G  +H  ++    + + Y++T+LI MY
Sbjct: 407 LFREMQKSE-FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++ +A  +F  +  ++   W+TMI+G+ ++G G+EAL++F  M  + + P  VTF 
Sbjct: 466 AKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFL 525

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSH+GLV EG   FN M   YG  P VKHY CMVD+LGRAG L  A++FIE M I
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSI 585

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            PG+SVW  LLGAC+IH++  LA      L EL+P+N G  VLLSNI++    +   + +
Sbjct: 586 EPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+  +   L K PG + IE+    H F +G+ SHP  KEIY KL+++  +++  GY P  
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPET 705

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
              L  VEEE+ +E  + +HSERLAIA+GLI+ EP   IRI+KNLRVC DCHTV KLISK
Sbjct: 706 ELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISK 764

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R I++RD  RFHHF+ G CSC DYW
Sbjct: 765 ITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 161/359 (44%), Gaps = 45/359 (12%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
               K+  +I  L Q H Q++  G   D    +KL     L    ++ YAR++F  + +P
Sbjct: 24  LDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQ--RLSDLGAIYYARDIFLSVQRP 81

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +++ +N L+R +S +  P  S  +F  L  ++   PN  T+ F I AA+     R G+ I
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG  +    + +L + ++++  Y     +  A  VF  + +KD + WN+MISG+ +   +
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 222 EKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            ++I+++R++  E+  + D  T++ +L A A+ ++L                        
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELR----------------------- 238

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
                              +G+QIH+   K G   + Y+ T  I +Y+KCG +     +F
Sbjct: 239 -------------------LGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALF 279

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
              +  D+  ++ MI G+   G    +L LF  +  +  +  + T  +++    H  L+
Sbjct: 280 REFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 17/245 (6%)

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           R V     +    ++ K+++ D    S S+ H       LA  +   ++ G ++ +S   
Sbjct: 4   RTVSSATAETTAALISKNTYLDFFKRSTSISH-------LAQTHAQIILHGFRNDIS--- 53

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +++   Q      AI   R++ +   +PD V +  VL      R       P+ +LS+F 
Sbjct: 54  LLTKLTQRLSDLGAIYYARDIFLSVQRPD-VFLFNVL-----MRGFSVNESPHSSLSVFA 107

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            L+ S ++ P+  T+   +SA +       G  IH +    G      L ++++ MY K 
Sbjct: 108 HLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF 167

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNV 389
             ++ A +VF  +  +D  +W+TMI+G+       E++ +F  +  E+  + +  T  ++
Sbjct: 168 WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 390 LCACS 394
           L A +
Sbjct: 228 LPAVA 232


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/483 (44%), Positives = 320/483 (66%), Gaps = 12/483 (2%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ N ++  Y   G++A A  VF  + ++D+VSWN+MI G+   G  + A E++  M+
Sbjct: 105 DVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMD 164

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                 D  +  +++SA  K      GR   +AL ++ E++ +  VNPD  T VSVLSAC
Sbjct: 165 ----DRDAFSWSSMMSAYTK------GRRSKDALELWREMR-AACVNPDCTTMVSVLSAC 213

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           + +GA+ +G ++H  ++  G++L+  L T+LIDMY KCG+++ ++ VFH++  +DV  WS
Sbjct: 214 SDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWS 273

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +MI G A +G G +AL LFSRM    ++PN VTF  VL +C+H GLV +G+ +F+ M  V
Sbjct: 274 SMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVV 333

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +GV P V+HY CMVD+LGR+G ++EA + I  MP  P A +W ALLGAC+I++NVE+AE 
Sbjct: 334 HGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEE 393

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A + L  L+P   G  VLLSNIYA+   W+ V+E+R+ +R   +++ PG SSIE    IH
Sbjct: 394 AMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIH 453

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           +F++G+ SHP  KEIY  L E++ RL+  GY P    +LQ ++E+  +E+AL  HSE+LA
Sbjct: 454 EFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQS-KERALAEHSEKLA 512

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           +A+GL++      +RI KNLR C DCH+  KLI+ LY R++++RDR RFHHF  G CSC 
Sbjct: 513 VAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCK 572

Query: 653 DYW 655
           DYW
Sbjct: 573 DYW 575



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 1/183 (0%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ ARE+F+ +   + ++W++++ AY+       +  ++ ++   +   P+  T   V+ 
Sbjct: 153 VDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREM-RAACVNPDCTTMVSVLS 211

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A + +    VG  +H  V  +  E D+ +  +LI  YA CGD+  +  VF  +  KDV++
Sbjct: 212 ACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLT 271

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W+SMI G    GF   A+ L+  M  E ++P+EVT + VL +C     +  G+    ++S
Sbjct: 272 WSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMS 331

Query: 268 IFH 270
           + H
Sbjct: 332 VVH 334



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 93/238 (39%), Gaps = 72/238 (30%)

Query: 281 DEFTFVSVLSACAQLGA-----MDIGV---QIHAKMKKQGIKL-NCYLTTSLIDMYTKCG 331
           + F+    + A A L A      D+G+    +HA+  K G    + ++ T+L++ Y K G
Sbjct: 30  NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAG 89

Query: 332 NLD-------------------------------KALEVFHTVKSRDVFVWSTMIAGFAM 360
             D                               +A  VF  ++ RD+  W+TMI G+A+
Sbjct: 90  RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAV 149

Query: 361 ----------------------------YGCGR---EALDLFSRMQEAKVKPNAVTFTNV 389
                                       Y  GR   +AL+L+  M+ A V P+  T  +V
Sbjct: 150 NGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSV 209

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           L ACS  G +  G    +Q     GV   VK  T ++DM  + G ++ +V     MP+
Sbjct: 210 LSACSDMGALAVG-AEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPV 266


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/630 (37%), Positives = 356/630 (56%), Gaps = 61/630 (9%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYFPN 138
           L     L  AR++FD + +  +  W  LI  Y     + E ++ F+ FL+      + P+
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE----DGFEPD 253

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG-DLAMAYC-- 195
            +T   +I A   L   R+G  +H + ++  F  D  +S  L+  YA    + AM Y   
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANK 313

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFE-KAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
           VF  + K DV+SW ++ISG+VQ G  E K + L+ EM  E++KP+ +T  ++L ACA   
Sbjct: 314 VFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANIS 373

Query: 255 DLEFGRWPN-----------------------------EALSIFHEL------------- 272
           D + GR  +                             EA  +F++L             
Sbjct: 374 DHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGR 433

Query: 273 ------QLSK-NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                 ++ + ++     TF S++SA A +G +  G Q+HA   K G   + +++ SL+ 
Sbjct: 434 DAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVS 493

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CG L+ A   F+ +K R+V  W++MI+G A +G    AL LF  M    VKPN VT
Sbjct: 494 MYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVT 553

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  VL ACSH GLV EG+ +F  M+  +G++P ++HY CMVD+L R+GL+ EA+EFI +M
Sbjct: 554 YIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEM 613

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+   A VW  LLGAC+ H+N+E+ E A  +++ELEP +    VLLSN+YA  G WD V+
Sbjct: 614 PLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVA 673

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R  MR + L KE G S +EV    H+F AG++SHP  ++IY KLD +V  +K  GYVP
Sbjct: 674 RIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVP 733

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S +L  + +E ++EQ L  HSE++A+A+GLI+    +PIRI KNLRVC DCH+  K +
Sbjct: 734 DTSIVLHDMSDE-LKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYM 792

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK   REI+LRD  RFH  + G CSC +YW
Sbjct: 793 SKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 180/400 (45%), Gaps = 63/400 (15%)

Query: 18  SLPRHPNPTTL--TVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF-FDPYSAS 74
           + PR+P        +++ H      + +   +  +++  + +H ++LR  L   D   A+
Sbjct: 29  TFPRYPKSLAAHPALSSSHPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVAN 88

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
            L T        ++  AR +FD +    ++ +W  +    + +    +S ++  +++  S
Sbjct: 89  SLLT--LYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEML-ES 145

Query: 134 PYFPNEFTFPFVIKAAAR-----LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
              PN +T   V  A        LV   V   +H M +   +  D+ + ++LI   A  G
Sbjct: 146 GLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDMLARNG 202

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           DLA A  VF  + +K VV W  +IS +VQG   E+A+E++ +   +  +PD  TM +++S
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           AC                                           +LG++ +G+Q+H+  
Sbjct: 263 AC------------------------------------------TELGSVRLGLQLHSLA 280

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALE----VFHTVKSRDVFVWSTMIAGFAMYGCG 364
            + G   +  ++  L+DMY K  N+++A++    VF  ++  DV  W+ +I+G+   G  
Sbjct: 281 LRMGFASDACVSCGLVDMYAK-SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQ 339

Query: 365 R-EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             + + LF  M    +KPN +T++++L AC++    D GR
Sbjct: 340 ENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGR 379



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 16/212 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C NI      +Q+H  ++++         + L +  A      +E AR +F+Q+ 
Sbjct: 364 SILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYA--ESGCMEEARRVFNQLY 421

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + ++ +  T  R       P+   +  + +  +S       TF  +I AAA +     GQ
Sbjct: 422 ERSMISCITEGRD-----APLDHRIGRMDMGISSS------TFASLISAAASVGMLTKGQ 470

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H M +K+ F  D F+SNSL+  Y+ CG L  A   F  +  ++V+SW SMISG  + G
Sbjct: 471 QLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHG 530

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           + E+A+ L+ +M +  VKP++VT +AVLSAC+
Sbjct: 531 YAERALSLFHDMILTGVKPNDVTYIAVLSACS 562


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 341/579 (58%), Gaps = 31/579 (5%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +N LIRA ++S+    + ++F  +    P  FP+ +T+P  +K+ +      +G  IH  
Sbjct: 89  FNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSA 148

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           V K   + ++++++S I  Y+ CG    AY VF  +  +DVVSWN+MI+GF + G F++A
Sbjct: 149 VAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRA 208

Query: 225 IELYRE-MEMENVKPDEVTMVAVLSAC--AKKRDLEFGR-------------WPNEALSI 268
           IE++++ + ++   PD  TM  +L A   AK  D+ F R             W N  L++
Sbjct: 209 IEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISW-NAMLAV 267

Query: 269 FHE------------LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           +              L     V PD  T  +VL  C +L A  +G +IH  +K++ +  N
Sbjct: 268 YANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPN 327

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L  +L+DMY  CG L  A E+F  + +RDV  W+++I+ +  +G GREA+DLF +M  
Sbjct: 328 LLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLG 387

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             ++P+++ F  VL ACSH+GL+ +G+ +F+ M   Y ++P  +HYTCMVD+LGRAG ++
Sbjct: 388 QGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCIN 447

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA +FI  M I P   VWGALL AC+IH N+++   A  +L  L PE  G  VLLSN+YA
Sbjct: 448 EAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYA 507

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           + G+W +V+ +R  M   G+KK PG S +E+  ++H F  G+  HP  + IY KLDE++ 
Sbjct: 508 RAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLG 567

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           +++  GY P     L  VEEED +E  L++HSE+LAIA+ L++  P   IR+  NLR C 
Sbjct: 568 KIRGMGYNPEVEATLHDVEEED-KEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCS 626

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH  AKLIS +  REI+L+D  R HH   G CSC DYW
Sbjct: 627 DCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 27/241 (11%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           + + R +FD +    L +WN ++  Y+++   +++  +F+ L+      P+  T   V+ 
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFM-LMEKDEVEPDSITLATVLP 301

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
               L  F VG+ IH ++ + +   +L + N+L+  YA CG L  A  +F ++  +DV+S
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS 361

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEAL 266
           W S+IS + + G   +A++L+ +M  + ++PD +  VAVL+AC+    L  G+ + +   
Sbjct: 362 WTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMT 421

Query: 267 SIFHELQLSKN-------------------------VNPDEFTFVSVLSACAQLGAMDIG 301
           S +H +  +++                         + P+E  + ++L AC     MDIG
Sbjct: 422 SRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIG 481

Query: 302 V 302
           +
Sbjct: 482 L 482


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/627 (36%), Positives = 356/627 (56%), Gaps = 14/627 (2%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           NG +  P  + S++  C  +K LK    IH   ++ G+  D +  + L    A      +
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYA--NCLCV 394

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
             A+ +FD +P  N+ TWN+L   Y +   P +   +F ++V N    P+  T   ++ A
Sbjct: 395 REAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVK-PDLVTMLSILHA 453

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            + L   + G+ IHG  ++    +D+F+ N+L+  YA C  +  A  VF +I  ++V SW
Sbjct: 454 CSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASW 513

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N +++ +     +EK + ++ +M  + VK DE+T   V+  C K   +E      EA+ I
Sbjct: 514 NGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIE------EAMEI 567

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           F ++Q +    PDE T  S+L AC+    + +G +IH  + +     +   T +L+DMY 
Sbjct: 568 FRKMQ-TMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYA 626

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG L  +  VF  +  +DVF W+TMI    M+G G+EAL LF +M  + VKP++ TFT 
Sbjct: 627 KCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTC 686

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VL ACSHS LV+EG   FN M   + V P  +HYTC+VD+  RAG L+EA  FI++MP+ 
Sbjct: 687 VLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPME 746

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A  W A L  C++++NVELA+ +   L E++P      V L NI      W   S++R
Sbjct: 747 PTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIR 806

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K M+  G+ K PGCS   V   +H F+AG+ S+    +IY+ LDE+ A++K+ GY P+  
Sbjct: 807 KLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTD 866

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
           ++L  +++E+  E   N HSE+LA+A+G++++     IR+ KNLR+CGDCH   K +S +
Sbjct: 867 YVLHDIDQEEKAESLCN-HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNV 925

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
               I++RD  RFHHF+ GNCSC D+W
Sbjct: 926 VGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 194/411 (47%), Gaps = 50/411 (12%)

Query: 40  PVF-SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           PVF ++ K C   ++  ++KQ H    R G+  D    +      A G    +E AR +F
Sbjct: 41  PVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIH--AYGKCKCVEGARRVF 98

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D +   ++ TWN+L   Y +   P Q   +F ++  N     N  T   ++   + L   
Sbjct: 99  DDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK-ANPLTVSSILPGCSDLQDL 157

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           + G+ IHG V++    +D+F+S++ ++FYA C  +  A  VF ++  +DVV+WNS+ S +
Sbjct: 158 KSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCY 217

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V  GF +K + ++REM ++ VKPD VT+  +LSAC+  +DL+ G+               
Sbjct: 218 VNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK--------------- 262

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                                       IH    K G+  N +++ +L+++Y  C  + +
Sbjct: 263 ---------------------------AIHGFALKHGMVENVFVSNALVNLYESCLCVRE 295

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF  +  R+V  W+++ + +   G  ++ L++F  M    VKP+ +  +++L ACS 
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQ 355

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              +  G+   +     +G+V  V   T +V++      + EA    + MP
Sbjct: 356 LKDLKSGKT-IHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMP 405



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 232/496 (46%), Gaps = 59/496 (11%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS---KLFTPCALGTF 85
           N  + +P  V S++  C +++ LK   +IH  ++R G+  D + +S     +  C     
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCL---- 190

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             +  A+ +FD +P  ++ TWN+L   Y +   P +   +F ++V +    P+  T   +
Sbjct: 191 -CVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVK-PDPVTVSCI 248

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A + L   + G+AIHG  +K    +++F+SN+L++ Y  C  +  A  VF ++  ++V
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV 308

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           ++WNS+ S +V  GF +K + ++REM +  VKPD + M ++L AC++ +DL+ G+     
Sbjct: 309 ITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK----- 363

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                                                 IH    K G+  + ++ T+L++
Sbjct: 364 -------------------------------------TIHGFAVKHGMVEDVFVCTALVN 386

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           +Y  C  + +A  VF  +  R+V  W+++ + +   G  ++ L++F  M    VKP+ VT
Sbjct: 387 LYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVT 446

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
             ++L ACS    +  G++  +     +G+V  V     ++ +  +   + EA    + +
Sbjct: 447 MLSILHACSDLQDLKSGKV-IHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLI 505

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHL--LELEPENHGALVLLSNIYAKTGKWDN 503
           P    AS W  +L A   ++  E   Y  S +   E++ +     V++     K  + + 
Sbjct: 506 PHREVAS-WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGC-VKNSRIEE 563

Query: 504 VSELRKHMRVSGLKKE 519
             E+ + M+  G K +
Sbjct: 564 AMEIFRKMQTMGFKPD 579



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 45/311 (14%)

Query: 137 PNEFTFPFVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
           P++  F  V KA AA     +V Q  H    +     D+ I N+ IH Y  C  +  A  
Sbjct: 38  PDKPVFMAVAKACAASRDALKVKQ-FHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARR 96

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  +  +DVV+WNS+ + +V  GF ++ + ++R+M +  VK + +T+ ++L  C+  +D
Sbjct: 97  VFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQD 156

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
           L+ G+                                          +IH  + + G+  
Sbjct: 157 LKSGK------------------------------------------EIHGFVVRHGMVE 174

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + +++++ ++ Y KC  + +A  VF  +  RDV  W+++ + +   G  ++ L++F  M 
Sbjct: 175 DVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMV 234

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
              VKP+ VT + +L ACS    +  G+   +     +G+V  V     +V++      +
Sbjct: 235 LDGVKPDPVTVSCILSACSDLQDLKSGKA-IHGFALKHGMVENVFVSNALVNLYESCLCV 293

Query: 436 DEAVEFIEKMP 446
            EA    + MP
Sbjct: 294 REAQAVFDLMP 304



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 5/198 (2%)

Query: 252 KKRDLEFG---RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           KK+   FG     PNEA+ I+   + ++ + PD+  F++V  ACA         Q H   
Sbjct: 8   KKKSPSFGIPHGLPNEAIKIYTSSR-ARGIKPDKPVFMAVAKACAASRDALKVKQFHDDA 66

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G+  +  +  + I  Y KC  ++ A  VF  + +RDV  W+++ A +   G  ++ L
Sbjct: 67  TRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGL 126

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           ++F +M   KVK N +T +++L  CS    +  G+   +     +G+V  V   +  V+ 
Sbjct: 127 NVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKE-IHGFVVRHGMVEDVFVSSAFVNF 185

Query: 429 LGRAGLLDEAVEFIEKMP 446
             +   + EA    + MP
Sbjct: 186 YAKCLCVREAQTVFDLMP 203


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/640 (37%), Positives = 348/640 (54%), Gaps = 68/640 (10%)

Query: 76   LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
            L+  CA      +E A + F +    N+  WN ++ AY    +   SF IF Q+      
Sbjct: 393  LYAKCA-----DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI-EEI 446

Query: 136  FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             PN++T+P ++K   RL    +G+ IH  +IK++F+ + ++ + LI  YA  G L  A+ 
Sbjct: 447  VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 506

Query: 196  VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV-------------- 241
            + +    KDVVSW +MI+G+ Q  F +KA+  +R+M    ++ DEV              
Sbjct: 507  ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 566

Query: 242  ------------------------TMVAVLSACAKKRD--LEFGR--------WP----- 262
                                     +V + S C K  +  L F +        W      
Sbjct: 567  LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 626

Query: 263  -------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                    EAL +F  +   + ++ + FTF S + A ++   M  G Q+HA + K G   
Sbjct: 627  FQQSGNNEEALRVFVRMN-REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 685

Query: 316  NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
               +  +LI MY KCG++  A + F  V +++   W+ +I  ++ +G G EALD F +M 
Sbjct: 686  ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 745

Query: 376  EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
             + V+PN VT   VL ACSH GLVD+G  +F  M   YG+ P  +HY C+VDML RAGLL
Sbjct: 746  HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 805

Query: 436  DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
              A EFI++MPI P A VW  LL AC +H+N+E+ E+A  HLLELEPE+    VLLSN+Y
Sbjct: 806  SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 865

Query: 496  AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
            A + KWD     R+ M+  G+KKEPG S IEV   IH F  G+ +HPL  EI+    ++ 
Sbjct: 866  AVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLT 925

Query: 556  ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
             R    GYV +   LL  ++ E  ++  + +HSE+LAI++GL+S+  + PI ++KNLRVC
Sbjct: 926  KRASEIGYVQDCFSLLNELQHEQ-KDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 984

Query: 616  GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             DCH   K +SK+ NREI++RD YRFHHF GG CSC DYW
Sbjct: 985  NDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 222/478 (46%), Gaps = 68/478 (14%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++QIH ++L  GL       + L    +   F  L  AR +FD +   +  +W  +I   
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL--ARRVFDGLRLKDHSSWVAMISGL 223

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +    ++  +F  + Y     P  + F  V+ A  ++    +G+ +HG+V+K  F  D
Sbjct: 224 SKNECEAEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 282

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N+L+  Y   G+L  A  +F  + ++D V++N++I+G  Q G+ EKA+EL++ M +
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 342

Query: 234 ENVKPDEVTMV-----------------------------------AVLSACAKKRDLE- 257
           + ++PD  T+                                    A+L+  AK  D+E 
Sbjct: 343 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 402

Query: 258 ----------------------FGRWPN--EALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                 +G   +   +  IF ++Q+ + V P+++T+ S+L  C 
Sbjct: 403 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCI 461

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           +LG +++G QIH+++ K   +LN Y+ + LIDMY K G LD A ++      +DV  W+T
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 521

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+  Y    +AL  F +M +  ++ + V  TN + AC+    + EG+    Q   V 
Sbjct: 522 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQA-CVS 580

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGALLGACKIHENVELA 470
           G    +     +V +  R G ++E+    E+     G ++ W AL+   +   N E A
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE--AGDNIAWNALVSGFQQSGNNEEA 636



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 218/498 (43%), Gaps = 80/498 (16%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           +K   ++ + +++H+Q+L+ GL  +   + KLF          L  A ++FD++P+  ++
Sbjct: 55  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFK--GDLYGAFKVFDEMPERTIF 112

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA-ARLVQFRVGQAIHG 163
           TWN +I+  +S     + F +F+++V +    PNE TF  V++A     V F V + IH 
Sbjct: 113 TWNKMIKELASRNLIGEVFGLFVRMV-SENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA 171

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            ++     D   + N LI  Y+  G + +A  VF  +  KD  SW +MISG  +     +
Sbjct: 172 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 231

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AI L+ +M +  + P      +VLSAC K   LE                          
Sbjct: 232 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE-------------------------- 265

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                           IG Q+H  + K G   + Y+  +L+ +Y   GNL  A  +F  +
Sbjct: 266 ----------------IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RD   ++T+I G +  G G +A++LF RM    ++P++ T  +++ ACS  G +  G+
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 404 MFF-----------NQMEPV----------------YGVVPGVKHYTCMVDMLGRAGLLD 436
                         N++E                  Y +   V++      ML   GLLD
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429

Query: 437 E---AVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE-NHGALV 489
           +   +     +M    IVP    + ++L  C    ++EL E   S +++   + N     
Sbjct: 430 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 489

Query: 490 LLSNIYAKTGKWDNVSEL 507
           +L ++YAK GK D   ++
Sbjct: 490 VLIDMYAKLGKLDTAWDI 507



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 38/289 (13%)

Query: 45  IKQCKNIKQLK---QIHTQMLRTGLFFD-PYSAS--KLFTPCALGTFSSLEYAREMFDQI 98
           +  C  ++ LK   QIH Q   +G   D P+  +   L++ C       +E +   F+Q 
Sbjct: 558 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG-----KIEESYLAFEQT 612

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +   WN L+  +  S    ++  +F+++        N FTF   +KAA+     + G
Sbjct: 613 EAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASETANMKQG 671

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H ++ K+ ++ +  + N+LI  YA CG ++ A   F+ +  K+ VSWN++I+ + + 
Sbjct: 672 KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKH 731

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACA------------KKRDLEFGRWPNEA- 265
           GF  +A++ + +M   NV+P+ VT+V VLSAC+            +  + E+G  P    
Sbjct: 732 GFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEH 791

Query: 266 -------------LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
                        LS   E      + PD   + ++LSAC     M+IG
Sbjct: 792 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 840



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%)

Query: 275 SKNVNPDEFTFVSVLSACAQL-GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           ++ + P+  T   +L  C +  G++D G ++H+++ K G+  N  L+  L D Y   G+L
Sbjct: 37  NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 96

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A +VF  +  R +F W+ MI   A      E   LF RM    V PN  TF+ VL AC
Sbjct: 97  YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 156

Query: 394 SHSGLVDEGRMFFNQMEPVYGVV--PGVKHYTC----MVDMLGRAGLLDEAVEFIEKMPI 447
                   G + F+ +E ++  +   G++  T     ++D+  R G +D A    + + +
Sbjct: 157 RG------GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 210

Query: 448 VPGASVWGALLGACKIHE 465
              +S W A++     +E
Sbjct: 211 KDHSS-WVAMISGLSKNE 227


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/640 (37%), Positives = 348/640 (54%), Gaps = 68/640 (10%)

Query: 76   LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
            L+  CA      +E A + F +    N+  WN ++ AY    +   SF IF Q+      
Sbjct: 433  LYAKCA-----DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI-EEI 486

Query: 136  FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             PN++T+P ++K   RL    +G+ IH  +IK++F+ + ++ + LI  YA  G L  A+ 
Sbjct: 487  VPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD 546

Query: 196  VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV-------------- 241
            + +    KDVVSW +MI+G+ Q  F +KA+  +R+M    ++ DEV              
Sbjct: 547  ILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQA 606

Query: 242  ------------------------TMVAVLSACAKKRD--LEFGR--------WP----- 262
                                     +V + S C K  +  L F +        W      
Sbjct: 607  LKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666

Query: 263  -------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                    EAL +F  +   + ++ + FTF S + A ++   M  G Q+HA + K G   
Sbjct: 667  FQQSGNNEEALRVFVRMN-REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725

Query: 316  NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
               +  +LI MY KCG++  A + F  V +++   W+ +I  ++ +G G EALD F +M 
Sbjct: 726  ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785

Query: 376  EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
             + V+PN VT   VL ACSH GLVD+G  +F  M   YG+ P  +HY C+VDML RAGLL
Sbjct: 786  HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 845

Query: 436  DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
              A EFI++MPI P A VW  LL AC +H+N+E+ E+A  HLLELEPE+    VLLSN+Y
Sbjct: 846  SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 905

Query: 496  AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
            A + KWD     R+ M+  G+KKEPG S IEV   IH F  G+ +HPL  EI+    ++ 
Sbjct: 906  AVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLT 965

Query: 556  ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
             R    GYV +   LL  ++ E  ++  + +HSE+LAI++GL+S+  + PI ++KNLRVC
Sbjct: 966  KRASEIGYVQDCFSLLNELQHEQ-KDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVC 1024

Query: 616  GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             DCH   K +SK+ NREI++RD YRFHHF GG CSC DYW
Sbjct: 1025 NDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 222/478 (46%), Gaps = 68/478 (14%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++QIH ++L  GL       + L    +   F  L  AR +FD +   +  +W  +I   
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL--ARRVFDGLRLKDHSSWVAMISGL 263

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +    ++  +F  + Y     P  + F  V+ A  ++    +G+ +HG+V+K  F  D
Sbjct: 264 SKNECEAEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N+L+  Y   G+L  A  +F  + ++D V++N++I+G  Q G+ EKA+EL++ M +
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382

Query: 234 ENVKPDEVTMV-----------------------------------AVLSACAKKRDLE- 257
           + ++PD  T+                                    A+L+  AK  D+E 
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 258 ----------------------FGRWPN--EALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                 +G   +   +  IF ++Q+ + V P+++T+ S+L  C 
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCI 501

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           +LG +++G QIH+++ K   +LN Y+ + LIDMY K G LD A ++      +DV  W+T
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+  Y    +AL  F +M +  ++ + V  TN + AC+    + EG+    Q   V 
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQA-CVS 620

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGALLGACKIHENVELA 470
           G    +     +V +  R G ++E+    E+     G ++ W AL+   +   N E A
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE--AGDNIAWNALVSGFQQSGNNEEA 676



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 218/498 (43%), Gaps = 80/498 (16%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           +K   ++ + +++H+Q+L+ GL  +   + KLF          L  A ++FD++P+  ++
Sbjct: 95  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFK--GDLYGAFKVFDEMPERTIF 152

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA-ARLVQFRVGQAIHG 163
           TWN +I+  +S     + F +F+++V +    PNE TF  V++A     V F V + IH 
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMV-SENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA 211

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            ++     D   + N LI  Y+  G + +A  VF  +  KD  SW +MISG  +     +
Sbjct: 212 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 271

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AI L+ +M +  + P      +VLSAC K   LE                          
Sbjct: 272 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE-------------------------- 305

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                           IG Q+H  + K G   + Y+  +L+ +Y   GNL  A  +F  +
Sbjct: 306 ----------------IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             RD   ++T+I G +  G G +A++LF RM    ++P++ T  +++ ACS  G +  G+
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 404 MFF-----------NQMEPV----------------YGVVPGVKHYTCMVDMLGRAGLLD 436
                         N++E                  Y +   V++      ML   GLLD
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469

Query: 437 E---AVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE-NHGALV 489
           +   +     +M    IVP    + ++L  C    ++EL E   S +++   + N     
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529

Query: 490 LLSNIYAKTGKWDNVSEL 507
           +L ++YAK GK D   ++
Sbjct: 530 VLIDMYAKLGKLDTAWDI 547



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 38/289 (13%)

Query: 45  IKQCKNIKQLK---QIHTQMLRTGLFFD-PYSAS--KLFTPCALGTFSSLEYAREMFDQI 98
           +  C  ++ LK   QIH Q   +G   D P+  +   L++ C       +E +   F+Q 
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG-----KIEESYLAFEQT 652

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              +   WN L+  +  S    ++  +F+++        N FTF   +KAA+     + G
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRM-NREGIDNNNFTFGSAVKAASETANMKQG 711

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H ++ K+ ++ +  + N+LI  YA CG ++ A   F+ +  K+ VSWN++I+ + + 
Sbjct: 712 KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKH 771

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACA------------KKRDLEFGRWPNEA- 265
           GF  +A++ + +M   NV+P+ VT+V VLSAC+            +  + E+G  P    
Sbjct: 772 GFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEH 831

Query: 266 -------------LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
                        LS   E      + PD   + ++LSAC     M+IG
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%)

Query: 275 SKNVNPDEFTFVSVLSACAQL-GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           ++ + P+  T   +L  C +  G++D G ++H+++ K G+  N  L+  L D Y   G+L
Sbjct: 77  NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A +VF  +  R +F W+ MI   A      E   LF RM    V PN  TF+ VL AC
Sbjct: 137 YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196

Query: 394 SHSGLVDEGRMFFNQMEPVYGVV--PGVKHYTC----MVDMLGRAGLLDEAVEFIEKMPI 447
                   G + F+ +E ++  +   G++  T     ++D+  R G +D A    + + +
Sbjct: 197 RG------GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRL 250

Query: 448 VPGASVWGALLGACKIHE 465
              +S W A++     +E
Sbjct: 251 KDHSS-WVAMISGLSKNE 267


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 352/574 (61%), Gaps = 28/574 (4%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E ARE+FD++ + N+ +W+ +I AY    +  ++  +F +++ +S   P++ T   ++ 
Sbjct: 310 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF-RMMLSSGMLPDKITLASLLY 368

Query: 148 AA------ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           A        ++ Q     ++HGM+       +L ++N L+HFY+    L  AY +F  + 
Sbjct: 369 ACINCRNLTQVRQVHAQASVHGML------QNLIVANKLVHFYSYYRALDDAYGLFDGMC 422

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +D VSW+ M+ GF + G +      +RE+     +PD  T             L F   
Sbjct: 423 VRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYT-------------LPFCGN 469

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            NE+L +F +++  + V PD+   V+V+ ACA+LGAM     I   ++++  +L+  L T
Sbjct: 470 ANESLVLFDKMR-EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT 528

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           ++IDM+ KCG ++ A E+F  ++ ++V  WS MIA +  +G GR+ALDLF  M  + + P
Sbjct: 529 AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILP 588

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N +T  ++L ACSH+GLV+EG  FF+ M   Y V   VKHYTC+VD+LGRAG LDEA++ 
Sbjct: 589 NKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKL 648

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           IE M +     +WGA LGAC+ H++V LAE A + LLEL+P+N G  +LLSNIYA  G+W
Sbjct: 649 IESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 708

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++V++ R  M    LKK PG + IEV+ + H+F  G+++HP  KEIY  L  +  +L+  
Sbjct: 709 EDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 768

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP+ + +L  V+EE ++   L  HSE+LAIA+GLI+     PIRI+KNLRVCGDCHT 
Sbjct: 769 GYVPDTNFVLHDVDEE-LKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTF 827

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KL+S +  R I++RD  RFHHF+ G CSC DYW
Sbjct: 828 CKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 191/424 (45%), Gaps = 68/424 (16%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           +P    S +  C+N+ Q++Q+H Q    G+  +   A+KL        + +L+ A  +FD
Sbjct: 80  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIY--FYSYYRALDDAYGLFD 137

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +   +  +W+ ++  ++   + I  F  F +L+      P+ +T PFVI+A   L   +
Sbjct: 138 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGAR-PDNYTLPFVIRACRDLKNLQ 196

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +                     +L+  Y  C ++  A  +F  + ++D+V+W  MI G+ 
Sbjct: 197 M---------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 235

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G   +++ L+ +M  E V PD+V MV V+ ACAK                        
Sbjct: 236 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK------------------------ 271

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                             LGAM     I   ++++  +L+  L T++IDMY KCG ++ A
Sbjct: 272 ------------------LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 313

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            E+F  ++ ++V  WS MIA +  +G GR+ALDLF  M  + + P+ +T  ++L AC + 
Sbjct: 314 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINC 373

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
             + + R    Q   V+G++  +     +V        LD+A    + M +    S W  
Sbjct: 374 RNLTQVRQVHAQ-ASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVS-WSV 431

Query: 457 LLGA 460
           ++G 
Sbjct: 432 MVGG 435



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 187/452 (41%), Gaps = 99/452 (21%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           +I+ C+++K L+     M               +  C       +E AR +FD++ + +L
Sbjct: 185 VIRACRDLKNLQMALVDM---------------YVKC-----REIEDARFLFDKMQERDL 224

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            TW  +I  Y+   +  +S ++F ++       P++     V+ A A+L      + I  
Sbjct: 225 VTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACAKLGAMHKARIIDD 283

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            + +  F+ D+ +  ++I  YA CG +  A  +F  + +K+V+SW++MI+ +   G   K
Sbjct: 284 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 343

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A++L+R M    + PD++T+ ++L AC   R+L   R                       
Sbjct: 344 ALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVR----------------------- 380

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                              Q+HA+    G+  N  +   L+  Y+    LD A  +F  +
Sbjct: 381 -------------------QVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 344 KSRDVFVWSTMIAGFAMYG--------------CG--------------REALDLFSRMQ 375
             RD   WS M+ GFA  G              CG               E+L LF +M+
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           E  V P+ V    V+ AC+  G + + R    +  + +    V+ G    T M+DM  + 
Sbjct: 482 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKC 537

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           G ++ A E  ++M      S W A++ A   H
Sbjct: 538 GCVESAREIFDRMEEKNVIS-WSAMIAAYGYH 568



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 130/314 (41%), Gaps = 77/314 (24%)

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
           Q     ++HGM+      +++ ++N LI+FY+    L  AY +F  +  +D VSW+ M+ 
Sbjct: 99  QVHAQASVHGML------ENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 152

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           GF + G +      +RE                L  C  +                    
Sbjct: 153 GFAKVGDYINCFGTFRE----------------LIRCGAR-------------------- 176

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                 PD +T   V+ AC  L                       L  +L+DMY KC  +
Sbjct: 177 ------PDNYTLPFVIRACRDLKN---------------------LQMALVDMYVKCREI 209

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           + A  +F  ++ RD+  W+ MI G+A  G   E+L LF +M+E  V P+ V    V+ AC
Sbjct: 210 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 269

Query: 394 SHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           +  G + + R+   +  + +    V+ G    T M+DM  + G ++ A E  ++M     
Sbjct: 270 AKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVESAREIFDRMEEKNV 325

Query: 451 ASVWGALLGACKIH 464
            S W A++ A   H
Sbjct: 326 IS-WSAMIAAYGYH 338



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 134/298 (44%), Gaps = 40/298 (13%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
            C+N+ Q++Q+H Q    G+  +   A+KL        + +L+ A  +FD +   +  +W
Sbjct: 372 NCRNLTQVRQVHAQASVHGMLQNLIVANKLVH--FYSYYRALDDAYGLFDGMCVRDSVSW 429

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF---------------------- 144
           + ++  ++   + +  F  F +L+      P+ +T PF                      
Sbjct: 430 SVMVGGFAKVGDYMNCFGTFRELIRCGAR-PDNYTLPFCGNANESLVLFDKMREEGVVPD 488

Query: 145 ------VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
                 V+ A A+L      + I   + +  F+ D+ +  ++I  +A CG +  A  +F 
Sbjct: 489 KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFD 548

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
            + +K+V+SW++MI+ +   G   KA++L+  M    + P+++T+V++L AC+    +E 
Sbjct: 549 RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE- 607

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM---KKQGI 313
                E L  F  +    +V  D   +  V+    + G +D  +++   M   K +G+
Sbjct: 608 -----EGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 37/269 (13%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           E  S FH LQ    +NP    ++S L  C  L  +    Q+HA+    G+  N  +   L
Sbjct: 68  EESSKFHFLQ---RLNPK--FYISALVNCRNLTQVR---QVHAQASVHGMLENIVVANKL 119

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I  Y+    LD A  +F  +  RD   WS M+ GFA  G        F  +     +P+ 
Sbjct: 120 IYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDN 179

Query: 384 VTFTNVLCACS-----HSGLVD---------EGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
            T   V+ AC         LVD         + R  F++M+        +  +T M+   
Sbjct: 180 YTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQE-----RDLVTWTVMIGGY 234

Query: 430 GRAGLLDEAVEFIEKM---PIVPGASVWGALLGAC----KIHENVELAEYACSHLLELEP 482
              G  +E++   EKM    +VP       ++ AC     +H+   + +Y      +L+ 
Sbjct: 235 AECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDV 294

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHM 511
               A++   ++YAK G  ++  E+   M
Sbjct: 295 ILGTAMI---DMYAKCGCVESAREIFDRM 320


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/664 (37%), Positives = 366/664 (55%), Gaps = 68/664 (10%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           N+ + ++IH  ++R G   D    + L T         +  AR +FD++P  +  +WN +
Sbjct: 222 NLVRGREIHVHVIRYGFESDVDVVNALIT--MYVKCGDVNTARLVFDKMPNRDRISWNAM 279

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           I  Y  +   ++   +F  ++   P  P+  T   VI A   L   R+G+ IHG V+++ 
Sbjct: 280 ISGYFENGVCLEGLRLFGMMI-KYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTE 338

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           F  D  I NSLI  Y+  G +  A  VF     +D+VSW +MISG+      +KA+E Y+
Sbjct: 339 FGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYK 398

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFG-----------------------------R 260
            ME E + PDE+T+  VLSAC+   +L+ G                             +
Sbjct: 399 MMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCK 458

Query: 261 WPNEALSIFHELQLSKNV------------------------------NPDEFTFVSVLS 290
             ++AL IFH   L KN+                               P+  T V VLS
Sbjct: 459 CIDKALEIFHS-TLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLS 517

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA++GA+  G +IHA   + G+  + ++  +++DMY +CG ++ A + F +V   +V  
Sbjct: 518 ACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTS 576

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ ++ G+A  G G  A +LF RM E+ V PN VTF ++LCACS SG+V EG  +FN M+
Sbjct: 577 WNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMK 636

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             Y ++P +KHY C+VD+LGR+G L+EA EFI+KMP+ P  +VWGALL +C+IH +VEL 
Sbjct: 637 YKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELG 696

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A  ++ + +  + G  +LLSN+YA  GKWD V+E+RK MR +GL  +PGCS +EV G 
Sbjct: 697 ELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGT 756

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV-PNRSHLLQLVEEEDVQEQALNLHSE 589
           +H FL+ ++ HP  KEI + L+    ++K  G   P  SH+  +   E  +      HSE
Sbjct: 757 VHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHMDIM---EASKADIFCGHSE 813

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           RLAI +GLI+  P  PI + KNL +C  CH + K IS+   REI +RD  +FHHF+GG C
Sbjct: 814 RLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGIC 873

Query: 650 SCMD 653
           SC D
Sbjct: 874 SCTD 877



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 186/378 (49%), Gaps = 61/378 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F +L  A  +F ++ + NL++WN L+  Y+ +    ++  ++ ++++     P+ +TFP 
Sbjct: 154 FGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK-PDVYTFPC 212

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++    +     G+ IH  VI+  FE D+ + N+LI  Y  CGD+  A  VF  +  +D
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRD 272

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD--------- 255
            +SWN+MISG+ + G   + + L+  M    V PD +TM +V++AC    D         
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332

Query: 256 ----LEFGRWPN----------------EALSIF-------------------------- 269
                EFGR P+                EA ++F                          
Sbjct: 333 YVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392

Query: 270 ----HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
               +++  ++ + PDE T   VLSAC+ L  +D+G+ +H   K++G+     +  SLID
Sbjct: 393 ALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLID 452

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KC  +DKALE+FH+   +++  W+++I G  +     EAL  F  M   ++KPN+VT
Sbjct: 453 MYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVT 511

Query: 386 FTNVLCACSHSGLVDEGR 403
              VL AC+  G +  G+
Sbjct: 512 LVCVLSACARIGALTCGK 529



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 124/282 (43%), Gaps = 45/282 (15%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  ++  V  S     L + N+L+  +   G+L  A+ VF  + K+++ SWN ++ G+ +
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G F++A++LY  M    VKPD  T   VL  C    +L  GR                 
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGR----------------- 227

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                    +IH  + + G + +  +  +LI MY KCG+++ A 
Sbjct: 228 -------------------------EIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR 262

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  + +RD   W+ MI+G+   G   E L LF  M +  V P+ +T T+V+ AC   G
Sbjct: 263 LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLG 322

Query: 398 LVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
               GR      +   +G  P +  +  ++ M    GL++EA
Sbjct: 323 DDRLGRQIHGYVLRTEFGRDPSI--HNSLIPMYSSVGLIEEA 362



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 6/195 (3%)

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L   HEL++   V  D   +V+++  C    A   G ++++ +      L+  L  +L+ 
Sbjct: 94  LDSMHELRIP--VEDD--AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLS 149

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+ + GNL  A  VF  ++ R++F W+ ++ G+A  G   EALDL+ RM    VKP+  T
Sbjct: 150 MFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYT 209

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL  C     +  GR     +   YG    V     ++ M  + G ++ A    +KM
Sbjct: 210 FPCVLRTCGGMPNLVRGREIHVHV-IRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268

Query: 446 PIVPGASVWGALLGA 460
           P     S W A++  
Sbjct: 269 PNRDRIS-WNAMISG 282



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 54/276 (19%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFDQ 97
           ++  C  I  L   K+IH   LRTG+ FD   P +   ++  C       +EYA + F  
Sbjct: 515 VLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCG-----RMEYAWKQFFS 569

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +    + +WN L+  Y+   +   +  +F ++V  S   PNE TF  ++ A +R      
Sbjct: 570 VDH-EVTSWNILLTGYAERGKGAHATELFQRMV-ESNVSPNEVTFISILCACSR------ 621

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
                GMV      + L   NS+ + Y+I  +L    CV  ++G+               
Sbjct: 622 ----SGMV-----AEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRS-------------- 658

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E+A E  ++M M   KPD     A+L++C     +E G    E  +IF +   S  
Sbjct: 659 -GKLEEAYEFIQKMPM---KPDPAVWGALLNSCRIHHHVELGELAAE--NIFQDDTTSVG 712

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                  ++ + +  A  G  D   ++   M++ G+
Sbjct: 713 Y------YILLSNLYADNGKWDKVAEVRKMMRQNGL 742


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 369/682 (54%), Gaps = 76/682 (11%)

Query: 41   VFSLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREM 94
            V SL+  C ++  L   KQ H+  ++ G+  D     +   L+  C     S ++ A E 
Sbjct: 375  VASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKC-----SDIKTAHEF 429

Query: 95   FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
            F      N+  WN ++ AY       +SF IF Q+       PN+FT+P +++  + L  
Sbjct: 430  FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIE-PNQFTYPSILRTCSSLRA 488

Query: 155  FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              +G+ IH  V+K+ F+ ++++S+ LI  YA  G L  A  +F  + +KDVVSW +MI+G
Sbjct: 489  VDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAG 548

Query: 215  FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC------------------------ 250
            + Q   F +A+ L++EM+ + +  D +   + +SAC                        
Sbjct: 549  YAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDD 608

Query: 251  --------------AKKRDLEFG----------RWPN------------EALSIFHEL-Q 273
                           K RD  F            W +            EALS+F ++ +
Sbjct: 609  LSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSK 668

Query: 274  LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
              + +N   FTF   +SA A +  + +G QIHA + K G      ++  LI +Y KCGN+
Sbjct: 669  AGQEINS--FTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNI 726

Query: 334  DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            D A   F  +  ++   W+ M+ G++ +G G +AL LF  M++  V PN VTF  VL AC
Sbjct: 727  DDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSAC 786

Query: 394  SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
            SH GLVDEG  +F  M  V+G+VP  +HY C+VD+LGR+GLL  A  F+E+MPI P A V
Sbjct: 787  SHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMV 846

Query: 454  WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
               LL AC +H+N+++ E+A SHLLELEP++    VLLSN+YA TGKW      R+ M+ 
Sbjct: 847  CRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKD 906

Query: 514  SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
             G+KKEPG S IEVN  +H F AG+  HP   +IY  L ++       GY+P  + LL  
Sbjct: 907  RGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLND 966

Query: 574  VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
             E        + +HSE+LAIA+GL+S+  S PI + KNLRVCGDCH   K +SK+ +R I
Sbjct: 967  AERRQKGPTQI-IHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVI 1025

Query: 634  LLRDRYRFHHFRGGNCSCMDYW 655
            ++RD YRFHHF+GG CSC DYW
Sbjct: 1026 VVRDSYRFHHFKGGICSCKDYW 1047



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 189/378 (50%), Gaps = 45/378 (11%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A+++FD + + +  +W  ++   S S    ++ ++F Q+ + S  +P  + F  V+ 
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM-HTSGVYPTPYIFSSVLS 279

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A  ++  ++VG+ +HG+V+K  F  + ++ N+L+  Y+  G+   A  VF  + ++D VS
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           +NS+ISG  Q G+ +KA+EL+++M ++ +KPD VT+ ++LSAC                 
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC----------------- 382

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                                    + +GA+ +G Q H+   K G+  +  L  +L+D+Y
Sbjct: 383 -------------------------SSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLY 417

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KC ++  A E F + ++ +V +W+ M+  + +     E+  +F++MQ   ++PN  T+ 
Sbjct: 418 VKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYP 477

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++L  CS    VD G     Q+    G    V   + ++DM  + G LD A++   ++  
Sbjct: 478 SILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKE 536

Query: 448 VPGASVWGALLGACKIHE 465
               S W A++     HE
Sbjct: 537 KDVVS-WTAMIAGYAQHE 553



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 191/412 (46%), Gaps = 51/412 (12%)

Query: 38  PHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYARE 93
           P+   S++  C  ++  K   Q+H  +L+ G   + Y  + L T  + LG F     A +
Sbjct: 271 PYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIP---AEQ 327

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +F+ + Q +  ++N+LI   S      ++  +F ++  +    P+  T   ++ A + + 
Sbjct: 328 VFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK-PDCVTVASLLSACSSVG 386

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
              VG+  H   IK+    D+ +  +L+  Y  C D+  A+  F+    ++VV WN M+ 
Sbjct: 387 ALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLV 446

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            +       ++ +++ +M+ME ++P++ T  ++L  C+  R                   
Sbjct: 447 AYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLR------------------- 487

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                                  A+D+G QIH ++ K G + N Y+++ LIDMY K G L
Sbjct: 488 -----------------------AVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKL 524

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           D AL++F  +K +DV  W+ MIAG+A +    EAL+LF  MQ+  +  + + F + + AC
Sbjct: 525 DHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +    +++G+    Q   V G    +     +V +  R G + +A    +K+
Sbjct: 585 AGIQALNQGQQIHAQ-ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI 635



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/505 (24%), Positives = 203/505 (40%), Gaps = 104/505 (20%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           NT +    S+ E   + + FL L+       N  T+ +++        F  G  +HG ++
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K  F  ++ +   L+  Y   GDL  A  VF  +  + +  WN ++  FV G    + + 
Sbjct: 96  KMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 227 LYREMEMENVKPDEVTMVAV-----------------------------LSACAKKRDLE 257
           L+R M  E VKPDE T   V                             L  C    DL 
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLY 215

Query: 258 FGR-WPNEALSIFHELQLSKNVN------------------------------PDEFTFV 286
           F   + N A  +F  LQ   +V+                              P  + F 
Sbjct: 216 FKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFS 275

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           SVLSAC ++    +G Q+H  + KQG  L  Y+  +L+ +Y++ GN   A +VF+ +  R
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQR 335

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D   ++++I+G +  G   +AL+LF +M    +KP+ VT  ++L ACS  G +  G+ F 
Sbjct: 336 DEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFH 395

Query: 407 NQMEPVYGVVPGVKH-----------YTCMVD---------------------MLGRAGL 434
           +     Y +  G+             Y    D                     ML   GL
Sbjct: 396 S-----YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 435 LD---EAVEFIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPE-NHGA 487
           LD   E+ +   +M    I P    + ++L  C     V+L E   + +L+   + N   
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMR 512
             +L ++YAK GK D+  ++ + ++
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLK 535


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/620 (37%), Positives = 362/620 (58%), Gaps = 15/620 (2%)

Query: 40  PVF-SLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           PVF +  K C    +  ++K++H    R G+  D +  + L    A G    +E AR +F
Sbjct: 79  PVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIH--AYGKCKCVEGARRVF 136

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D +   ++ +W +L   Y     P +   +F ++ + S   PN  T   ++ A A L   
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGW-SGVKPNPMTVSSILPACAELKDL 195

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           + G+ IHG  ++     +LF+ ++L+  YA C  +  A  VF ++  +DVVSWN +++ +
Sbjct: 196 KSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 255

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +   +EK   L+ +M  + V+ DE T  AV+  C     +E GR   EA+ +F ++Q  
Sbjct: 256 FKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC-----MENGR-SEEAVEMFRKMQ-K 308

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
               P+E T  S+L AC+    + +G +IH  + +     +   TT+L+ MY KCG+L+ 
Sbjct: 309 MGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNL 368

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +  VF  ++ +DV  W+TMI   AM+G G+EAL LF +M  ++V+PN+VTFT VL  CSH
Sbjct: 369 SRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSH 428

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           S LV+EG   FN M   + V P   HY+C+VD+  RAG L+EA +FI+ MP+ P AS WG
Sbjct: 429 SRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWG 488

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL AC++++NVELA+ +   L E+EP N G  V L NI      W   S++R  M+  G
Sbjct: 489 ALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERG 548

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           + K PGCS ++V  ++H F+ G+ S+    +IY+ LDE+V ++K  GY P+  ++LQ ++
Sbjct: 549 ITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDID 608

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E+  E   N HSE+LA+A+G++++     IR+ KNLR+CGDCH   K +SK+    I++
Sbjct: 609 QEEKAESLCN-HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVV 667

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ GNCSC D W
Sbjct: 668 RDSLRFHHFKNGNCSCKDLW 687



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 78/341 (22%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD IPQP+  T +TLI A ++     ++  I+  L       P+   F    KA A
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL-QERGIKPDMPVFLAAAKACA 89

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                   + +H    +     D+F+ N+LIH Y  C  +  A  VF  +  +DVVSW S
Sbjct: 90  VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 149

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           + S +V+ GF  K ++++REM    VKP+ +T+ ++L ACA+ +DL+ G+          
Sbjct: 150 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK---------- 199

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                                           +IH    + G+ +N ++ ++L+ +Y KC
Sbjct: 200 --------------------------------EIHGFAVRHGMVVNLFVCSALVSLYAKC 227

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIA----------GFAMY------------------- 361
            ++ +A  VF  +  RDV  W+ ++           GF+++                   
Sbjct: 228 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 287

Query: 362 -GC---GR--EALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            GC   GR  EA+++F +MQ+   KPN +T +++L ACS S
Sbjct: 288 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFS 328



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G F +A +L+  +     +PD  T   ++SA      L      NEA+ I+  LQ  + +
Sbjct: 26  GDFNRARQLFDNIP----QPDPTTCSTLISA------LTTHGLSNEAIKIYSSLQ-ERGI 74

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD   F++   ACA  G      ++H    + G+  + ++  +LI  Y KC  ++ A  
Sbjct: 75  KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 134

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RDV  W+++ + +   G  R+ +D+F  M  + VKPN +T +++L AC+    
Sbjct: 135 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 194

Query: 399 VDEGR 403
           +  G+
Sbjct: 195 LKSGK 199



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L   LI +    G+ ++A ++F  +   D    ST+I+    +G   EA+ ++S +QE 
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 378 KVKPNAVTFTNVLCACSHSG 397
            +KP+   F     AC+ SG
Sbjct: 73  GIKPDMPVFLAAAKACAVSG 92


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/618 (38%), Positives = 343/618 (55%), Gaps = 66/618 (10%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C  +      +QIHTQ+L+TG  F+ Y +S L    A      L++A ++F ++ 
Sbjct: 443 SILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA--KHGKLDHALKIFRRLK 500

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + ++ +W  +I  Y+   +  ++  +F ++  +     +   F   I A A +     G+
Sbjct: 501 ENDVVSWTAMIAGYTQHDKFTEALNLFKEM-QDQGIKSDNIGFASAISACAGIQALDQGR 559

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH     S + DDL I N+L+  YA CG +  AY  F  I  KD VSWNS++SGF Q G
Sbjct: 560 QIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSG 619

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
           +FE                                         EAL+IF ++     + 
Sbjct: 620 YFE-----------------------------------------EALNIFAQMN-KAGLE 637

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            + FTF S +SA A +  + IG QIH  ++K G      ++ +LI +Y KCG +D     
Sbjct: 638 INSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD---- 693

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
                      W++MI G++ +GCG EAL LF  M++  V PN VTF  VL ACSH GLV
Sbjct: 694 ---------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLV 744

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DEG  +F  M   + +VP  +HY C+VD+LGR+GLL  A  F+E+MPI P A VW  LL 
Sbjct: 745 DEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLS 804

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC +H+N+++ E+A SHLLELEP++    VL+SN+YA +GKWD     R+ M+  G+KKE
Sbjct: 805 ACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKE 864

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE--EE 577
           PG S +EV+  +H F AG+ +HP    IY  L  +  R    GYVP  + LL   E  ++
Sbjct: 865 PGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQK 924

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           D  E    +HSERLAIA+GL+S+  S P+ + KNLRVC DCH   K +SK+ +R I++RD
Sbjct: 925 DPTEI---IHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRD 981

Query: 638 RYRFHHFRGGNCSCMDYW 655
            YRFHHF+ G+CSC DYW
Sbjct: 982 SYRFHHFKVGSCSCKDYW 999



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 219/452 (48%), Gaps = 65/452 (14%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++QIH + + +G     +  + L        F  L  A+++F+ +   +  +W  +I   
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLIDLYFKNGF--LSSAKKVFENLKARDSVSWVAMISGL 240

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +    ++ ++F Q+V               + A  ++  F  G+ +HG+V+K  F  +
Sbjct: 241 SQNGYEEEAMLLFCQIV---------------LSACTKVEFFEFGKQLHGLVLKQGFSSE 285

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N+L+  Y+  G+L+ A  +F  + ++D VS+NS+ISG  Q G+  +A+ L+++M +
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL 345

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRW-------------------------------- 261
           +  KPD VT+ ++LSACA    L  G+                                 
Sbjct: 346 DCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKT 405

Query: 262 -------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
                         N++  IF ++Q+ + + P++FT+ S+L  C  LGA D+G QIH ++
Sbjct: 406 AHEFFLCYGQLDNLNKSFQIFTQMQI-EGIVPNQFTYPSILKTCTTLGATDLGEQIHTQV 464

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            K G + N Y+++ LIDMY K G LD AL++F  +K  DV  W+ MIAG+  +    EAL
Sbjct: 465 LKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEAL 524

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           +LF  MQ+  +K + + F + + AC+    +D+GR    Q   + G    +     +V +
Sbjct: 525 NLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ-SCLSGYSDDLSIGNALVSL 583

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             R G + EA    +++      S W +L+  
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVS-WNSLVSG 614



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 193/450 (42%), Gaps = 79/450 (17%)

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
            F  L  A  +FD++P  +L  WN +   + +     +   +F +++  +  F +E  F 
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF-DERIFA 167

Query: 144 FVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
            V++  +   V FR  + IH   I S FE   FI N LI  Y   G L+ A  VF  +  
Sbjct: 168 VVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKA 227

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           +D VSW +MISG  Q G+ E+A+ L+ ++              VLSAC K    EFG+  
Sbjct: 228 RDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGK-- 271

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                                                   Q+H  + KQG     Y+  +
Sbjct: 272 ----------------------------------------QLHGLVLKQGFSSETYVCNA 291

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+ +Y++ GNL  A ++FH +  RD   ++++I+G A  G    AL LF +M     KP+
Sbjct: 292 LVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM-------------- 428
            VT  ++L AC+  G +  G+ F +      G+   +     ++D+              
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKA-GMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 429 --LGRAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
              G+   L+++ +   +M    IVP    + ++L  C      +L E   + +L+   +
Sbjct: 411 LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ 470

Query: 484 -NHGALVLLSNIYAKTGKWDNVSELRKHMR 512
            N     +L ++YAK GK D+  ++ + ++
Sbjct: 471 FNVYVSSVLIDMYAKHGKLDHALKIFRRLK 500


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 350/610 (57%), Gaps = 43/610 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI- 110
           KQ+H +++R+    DPY AS   +L+  C      S + A+ +F+ +   N  +W  LI 
Sbjct: 280 KQLHAKVIRSLPQIDPYVASALIELYAKCG-----SFKEAKRVFNSLQDRNSVSWTVLIG 334

Query: 111 -----RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
                  +S S E        L  +       ++F    +I      +   +G+ +H + 
Sbjct: 335 GSLQYECFSKSVELFNQMRAELMAI-------DQFALATLISGCFNRMDLCLGRQLHSLC 387

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +KS     + +SNSLI  YA CGDL  A  VF  + ++D+VSW SMI+ + Q G   KA 
Sbjct: 388 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 447

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           E +  M   N     +T  A+L A  +    E G      L ++  +   K+V PD  T+
Sbjct: 448 EFFDGMATRNA----ITWNAMLGAYIQHGAEEDG------LKMYSAMLSQKDVTPDWVTY 497

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           V++   CA +GA  +G QI     K G+ LN  +  + I MY+KCG + +A ++F  +  
Sbjct: 498 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 557

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +DV  W+ MI G++ +G G++A   F  M     KP+ +++  VL  CSHSGLV EG+++
Sbjct: 558 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 617

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ M  V+G+ PG++H++CMVD+LGRAG L EA + I+KMP+ P A VWGALL ACKIH 
Sbjct: 618 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 677

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           N ELAE A  H+ EL+  + G+ +LL+ IY+  GK D+ +++RK MR  G+KK PG S +
Sbjct: 678 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 737

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV  ++H F A + SHP    I +K+DE++ ++   GYV   S   ++            
Sbjct: 738 EVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEI------------ 785

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+A+G++S+    PI I+KNLR+CGDCHTV KLIS + +RE ++RD  RFHHF+
Sbjct: 786 HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFK 845

Query: 646 GGNCSCMDYW 655
            G+CSC DYW
Sbjct: 846 SGSCSCGDYW 855



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 19/380 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E F+ + + ++ +WN +I A S S    ++  + +++ +      +  T+   + 
Sbjct: 210 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLT 268

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL     G+ +H  VI+S  + D +++++LI  YA CG    A  VF  +  ++ VS
Sbjct: 269 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 328

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I G +Q   F K++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 329 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ------ 382

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L    N       S++S  A+ G +     + + M ++ I       TS+I  Y
Sbjct: 383 -LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI----VSWTSMITAY 437

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTF 386
           ++ GN+ KA E F  + +R+   W+ M+  +  +G   + L ++S M   K V P+ VT+
Sbjct: 438 SQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 497

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G           G++  V      + M  + G + EA +  +   
Sbjct: 498 VTLFRGCADIGANKLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFD--- 553

Query: 447 IVPGASV--WGALLGACKIH 464
           ++ G  V  W A++     H
Sbjct: 554 LLNGKDVVSWNAMITGYSQH 573



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 183/404 (45%), Gaps = 68/404 (16%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           SL  A E+FD++P+ ++ +WNTL+   S ++ P  S+M                      
Sbjct: 102 SLSDAEELFDRMPRRDVASWNTLM---SDTSRPAGSWM---------------------- 136

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            +   L    +   + G+  K  F  D  +  +L+  +  CG +  A  +F  I +  + 
Sbjct: 137 -SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 195

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
             NSM++G+ +    + AIE + +M   +V    + M+A LS   + R         EAL
Sbjct: 196 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM-MIAALSQSGRVR---------EAL 245

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +  E+   K V  D  T+ S L+ACA+L ++  G Q+HAK+ +   +++ Y+ ++LI++
Sbjct: 246 GLVVEMH-RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 304

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG+  +A  VF++++ R+   W+ +I G   Y C  ++++LF++M+   +  +    
Sbjct: 305 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 364

Query: 387 TNVLCAC-----------SHSGLVDEGR----MFFNQMEPVYGVVPGVKH---------- 421
             ++  C            HS  +  G     +  N +  +Y     +++          
Sbjct: 365 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 424

Query: 422 -----YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                +T M+    + G + +A EF + M     A  W A+LGA
Sbjct: 425 RDIVSWTSMITAYSQIGNIIKAREFFDGMA-TRNAITWNAMLGA 467



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 26/318 (8%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWNSMISGFV 216
            +A+HG ++       +F+ N+L+H Y  CG L+ A  +    I + +V++ N M++G+ 
Sbjct: 39  ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYA 98

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTM------VAVLSACAKKRDLEFGRWPNEALSIFH 270
           + G    A EL+  M   +V      M           +C      E      + L +F 
Sbjct: 99  KQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL---APQLLGLFW 155

Query: 271 ELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           +     +  PD E   V +   C   G +D   ++ +++++  I    +   S++  Y K
Sbjct: 156 KFDFWGD--PDVETALVDMFVRC---GYVDFASRLFSQIERPTI----FCRNSMLAGYAK 206

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
              +D A+E F  +  RDV  W+ MIA  +  G  REAL L   M    V+ ++ T+T+ 
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVDMLGRAGLLDEAVEFIEKMPI 447
           L AC+    +  G+    +   V   +P +  Y  + ++++  + G   EA      +  
Sbjct: 267 LTACARLFSLGWGKQLHAK---VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 323

Query: 448 VPGASVWGALLGACKIHE 465
               S W  L+G    +E
Sbjct: 324 RNSVS-WTVLIGGSLQYE 340



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT- 342
                L +C   GA+     +H ++   G+    +L  +L+  Y  CG L  A  +    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           +K  +V   + M+ G+A  G   +A +LF RM    V
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/603 (37%), Positives = 355/603 (58%), Gaps = 11/603 (1%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           ++K++H    R G+  D +  + L    A G    +E AR +FD +   ++ +W +L   
Sbjct: 182 RVKEVHDDATRCGVMSDVFVGNALIH--AYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 239

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y     P +   +F ++ + S   PN  T   ++ A A L   + G+ IHG  ++     
Sbjct: 240 YVKCGFPRKGMDVFREMGW-SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV 298

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           +LF+ ++L+  YA C  +  A  VF ++  +DVVSWN +++ + +   +EK   L+ +M 
Sbjct: 299 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMS 358

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            + V+ DE T  AV+  C     +E GR   EA+ +F ++Q      P+E T  S+L AC
Sbjct: 359 RDGVRADEATWNAVIGGC-----MENGR-SEEAVEMFRKMQ-KMGFKPNEITISSILPAC 411

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           +    + +G +IH  + +     +   TT+L+ MY KCG+L+ +  VF  ++ +DV  W+
Sbjct: 412 SFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWN 471

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           TMI   AM+G G+EAL LF +M  ++V+PN+VTFT VL  CSHS LV+EG   FN M   
Sbjct: 472 TMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 531

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           + V P   HY+C+VD+  RAG L+EA +FI+ MP+ P AS WGALL AC++++NVELA+ 
Sbjct: 532 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKI 591

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           +   L E+EP N G  V L NI      W   S++R  M+  G+ K PGCS ++V  ++H
Sbjct: 592 SAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVH 651

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F+ G+ S+    +IY+ LDE+V ++K  GY P+  ++LQ +++E+  E   N HSE+LA
Sbjct: 652 TFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCN-HSEKLA 710

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           +A+G++++     IR+ KNLR+CGDCH   K +SK+    I++RD  RFHHF+ GNCSC 
Sbjct: 711 VAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCK 770

Query: 653 DYW 655
           D W
Sbjct: 771 DLW 773



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 159/348 (45%), Gaps = 78/348 (22%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD IPQP+  T +TLI A ++     ++  I+  L       P+   F    KA A
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSL-QERGIKPDMPVFLAAAKACA 175

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                   + +H    +     D+F+ N+LIH Y  C  +  A  VF  +  +DVVSW S
Sbjct: 176 VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTS 235

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           + S +V+ GF  K ++++REM    VKP+ +T+ ++L ACA+ +DL+ G+          
Sbjct: 236 LSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGK---------- 285

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                                           +IH    + G+ +N ++ ++L+ +Y KC
Sbjct: 286 --------------------------------EIHGFAVRHGMVVNLFVCSALVSLYAKC 313

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIA----------GFAMY------------------- 361
            ++ +A  VF  +  RDV  W+ ++           GF+++                   
Sbjct: 314 LSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVI 373

Query: 362 -GC---GR--EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            GC   GR  EA+++F +MQ+   KPN +T +++L ACS S  +  G+
Sbjct: 374 GGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGK 421



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G F +A +L+  +     +PD  T   ++SA      L      NEA+ I+  LQ  + +
Sbjct: 112 GDFNRARQLFDNIP----QPDPTTCSTLISA------LTTHGLSNEAIKIYSSLQ-ERGI 160

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD   F++   ACA  G      ++H    + G+  + ++  +LI  Y KC  ++ A  
Sbjct: 161 KPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARR 220

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RDV  W+++ + +   G  R+ +D+F  M  + VKPN +T +++L AC+    
Sbjct: 221 VFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKD 280

Query: 399 VDEGR 403
           +  G+
Sbjct: 281 LKSGK 285



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L   LI +    G+ ++A ++F  +   D    ST+I+    +G   EA+ ++S +QE 
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 378 KVKPNAVTFTNVLCACSHSG 397
            +KP+   F     AC+ SG
Sbjct: 159 GIKPDMPVFLAAAKACAVSG 178


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 361/625 (57%), Gaps = 52/625 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL--GTFSSLEYAREMFD 96
           HP+ S +  C +++ L Q+H   ++ GL   P   ++L T C       + L YAR++FD
Sbjct: 26  HPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFD 85

Query: 97  QIPQPNLYTW-NTLIRAYS-----SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ++ QP+   W NTL+R Y+     SS+    +  +F++++      P+ +TF  ++KA A
Sbjct: 86  RVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEG-VAPDTYTFVSLLKACA 144

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                  G+  H + +K       ++  +LI+ YA CGD   A   F       VVS+N+
Sbjct: 145 AARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNA 204

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI+  V+                                            P EAL +F 
Sbjct: 205 MIAAAVRSS-----------------------------------------RPGEALVLFR 223

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q +K +NP   T +SVLSACA LGA+ +G  +H  ++K G+     ++T+L+DMY KC
Sbjct: 224 EMQ-AKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKC 282

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G+L+ A+ VF  ++SRD   WS MI  +A +G GREA+ LF  M++  +KP+ +TF  +L
Sbjct: 283 GSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLL 342

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSHSGLV EG  +F+ M+  +G+VPG+KHY C+ D+L R+G L+ A +FI+++PI P 
Sbjct: 343 YACSHSGLVSEGLRYFDDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT 401

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LL AC  H +VEL +     +LEL+  + G  V+ SN+ A TG W+ ++ +RK 
Sbjct: 402 PILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKL 461

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G+ K PGCSSIE++  +H+F AG+  HP  +E    +DE++ +LK  GY+P+ SH+
Sbjct: 462 MSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHV 521

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
             +   E+ +  +L  HSE+LAIA+GL++  P   +R+VKNLRVC DCH++AK +S ++N
Sbjct: 522 FHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFN 581

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R I+LRD  RFHHF  G CSC DYW
Sbjct: 582 RRIILRDLNRFHHFERGICSCGDYW 606


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/629 (36%), Positives = 353/629 (56%), Gaps = 66/629 (10%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFT---------------PCALGTFSS-----L 88
           K+    + +H  ++R G  FD Y+A+ L                 P A    ++     +
Sbjct: 90  KHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKI 149

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           +  R++FD++P  ++ +WNT+I   + +    ++  +  ++   +   P+ FT   ++  
Sbjct: 150 DSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKEN-LRPDSFTLSSILPI 208

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
                    G+ IHG  I+  F+ D+FI +SLI  YA C  + ++ C F ++  +D +SW
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISW 268

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           NS+I+G VQ G F++ +  +R M                                     
Sbjct: 269 NSIIAGCVQNGRFDQGLGFFRRM------------------------------------- 291

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                L + V P + +F SV+ ACA L A+++G Q+HA + + G   N ++ +SL+DMY 
Sbjct: 292 -----LKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYA 346

Query: 329 KCGNLDKALEVFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           KCGN+  A  +F+ ++   RD+  W+ +I G AM+G   +A+ LF  M    VKP  V F
Sbjct: 347 KCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAF 406

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL ACSH+GLVDEG  +FN M+  +GV PG++HY  + D+LGRAG L+EA +FI  M 
Sbjct: 407 MAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMG 466

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P  SVW  LL AC+ H+N+ELAE   + +L ++P N GA V++SNIY+   +W + ++
Sbjct: 467 EEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAK 526

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           LR  MR +GLKK P CS IEV  ++H FLAG+ SHP   +I   L+ ++ +++  GYV +
Sbjct: 527 LRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLD 586

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            + +L  V+EE  +   L  HSERLAIA+G+IS      IR++KN+RVC DCHT  K ++
Sbjct: 587 TNEVLHDVDEEH-KRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMA 645

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 646 KIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 14/262 (5%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+F+   +  N+ + K+IH   +R G   D +  S L    A  T   +E +   F  + 
Sbjct: 207 PIFT---EHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCT--QVELSVCAFHLLS 261

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  +WN++I     +    Q    F +++      P + +F  VI A A L    +G+
Sbjct: 262 NRDAISWNSIIAGCVQNGRFDQGLGFFRRML-KEKVKPMQVSFSSVIPACAHLTALNLGK 320

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQ 217
            +H  +I+  F+D+ FI++SL+  YA CG++ MA  +F  + +  +D+VSW ++I G   
Sbjct: 321 QLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAM 380

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A+ L+ EM ++ VKP  V  +AVL+AC+    ++      E    F+ +Q    
Sbjct: 381 HGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVD------EGWKYFNSMQRDFG 434

Query: 278 VNPDEFTFVSVLSACAQLGAMD 299
           V P    + +V     + G ++
Sbjct: 435 VAPGLEHYAAVADLLGRAGRLE 456



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 23/161 (14%)

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           +L+ F+ L+ S  ++PD   F S+L A       ++   +HA + + G   + Y   +L+
Sbjct: 60  SLASFNLLR-SFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALM 118

Query: 325 DMYTK----------------------CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           +MY+K                         +D   ++F  +  RDV  W+T+IAG A  G
Sbjct: 119 NMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNG 178

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
              EAL++   M +  ++P++ T +++L   +    V +G+
Sbjct: 179 MYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 359/619 (57%), Gaps = 34/619 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFD 96
           S +  C  +  L   KQ+H Q++R     DPY AS   +L+  C  G F     A+ +F+
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKC--GCFKE---AKGVFN 329

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +   N   W  LI  +       +S  +F Q+        ++F    +I      +   
Sbjct: 330 SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL-DQFALATLISGCCSRMDLC 388

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ +H + +KS     + +SNSLI  YA C +L  A  +F  + +KD+VSW SMI+   
Sbjct: 389 LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHS 448

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G   KA E +  M  +NV    +T  A+L A  +    E G      L +++ +   K
Sbjct: 449 QVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDG------LRMYNVMLSEK 498

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           +V PD  T+V++   CA LGA  +G QI  +  K G+ L+  +  ++I MY+KCG + +A
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEA 558

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  +D+  W+ MI G++ +G G++A+++F  + +   KP+ +++  VL  CSHS
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV EG+ +F+ M+ V+ + PG++H++CMVD+LGRAG L EA + I++MP+ P A VWGA
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL ACKIH N ELAE A  H+ EL+  + G+ +L++ IYA  GK D+ +++RK MR  G+
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG S +EVN ++H F A + SHP    I  KLDE++ ++   GYV   S   ++   
Sbjct: 739 KKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDSPRSEI--- 795

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
                     HSE+LA+A+GL+S+    PI I+KNLR+CGDCHTV KLIS +  RE ++R
Sbjct: 796 ---------HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIR 846

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF GG+CSC DYW
Sbjct: 847 DAVRFHHFNGGSCSCGDYW 865



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 197/403 (48%), Gaps = 42/403 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A E+F ++P  ++ +WNTL+  Y  S + + S   F+ +  +    PN FTF + +K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           +   L +  +   + GMV K   +DD  ++ +L+  +  CG + +A  +FV I +  +  
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            NSM+ G+V+    + A+EL+  M   +V    + MV+ LS   + R         EAL 
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNM-MVSALSQSGRVR---------EALD 256

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +  ++Q SK V  D  T+ S L+ACA+L ++  G Q+HA++ +    ++ Y+ ++L+++Y
Sbjct: 257 MVVDMQ-SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELY 315

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG   +A  VF+++  R+   W+ +IAGF  +GC  E+++LF++M+   +  +     
Sbjct: 316 AKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALA 375

Query: 388 NVLCACS-----------HSGLVDEGRM----FFNQMEPVYGVVPGVK------------ 420
            ++  C            HS  +  G++      N +  +Y     ++            
Sbjct: 376 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEK 435

Query: 421 ---HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
               +T M+    + G + +A EF + M        W A+LGA
Sbjct: 436 DIVSWTSMITAHSQVGNIAKAREFFDGMS-TKNVITWNAMLGA 477



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 178/378 (47%), Gaps = 15/378 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E+FD +P+ ++ +WN ++ A S S    ++  + + +        +  T+   + 
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL-DSTTYTSSLT 278

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL   R G+ +H  VI++    D +++++L+  YA CG    A  VF  +  ++ V+
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVA 338

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I+GF+Q G F +++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 339 WTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ------ 392

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L            S++S  A+   +     I   M ++ I       TS+I  +
Sbjct: 393 -LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDI----VSWTSMITAH 447

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTF 386
           ++ GN+ KA E F  + +++V  W+ M+  +  +G   + L +++ M  E  V+P+ VT+
Sbjct: 448 SQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G     +   V G++        ++ M  + G + EA +  + + 
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTVKV-GLILDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 447 IVPGASVWGALLGACKIH 464
           +    S W A++     H
Sbjct: 567 VKDIVS-WNAMITGYSQH 583



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 47/311 (15%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM-IGKKDVVSWNSMISGFVQGGF 220
           HG ++       +F+ N+L+H Y  CG L  A  + +  I   +V++ N M++G+V+ G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              A+EL+  M   +V      M     +      LE           F  +  S + +P
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLES----------FVSMHRSGDSSP 136

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN-------- 332
           + FTF   + +C  LG   + +Q+   ++K G + +  +  +L+DM+ +CG         
Sbjct: 137 NAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLF 196

Query: 333 -----------------------LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
                                  +D ALE+F ++  RDV  W+ M++  +  G  REALD
Sbjct: 197 VRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVD 427
           +   MQ   V+ ++ T+T+ L AC+    +  G+    Q   V   +P +  Y  + +V+
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ---VIRNLPCIDPYVASALVE 313

Query: 428 MLGRAGLLDEA 438
           +  + G   EA
Sbjct: 314 LYAKCGCFKEA 324



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 34/188 (18%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC------------- 330
            F   L +C   GA+     +H ++   G+    +L  +L+  Y  C             
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 331 -------------------GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                              G L  A+E+F  + +RDV  W+T+++G+        +L+ F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 372 SRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             M +     PNA TF   + +C   G           ++  +G          +VDM  
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQK-FGSQDDSDVAAALVDMFV 184

Query: 431 RAGLLDEA 438
           R G +D A
Sbjct: 185 RCGTVDLA 192


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 357/615 (58%), Gaps = 44/615 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +F+L+    ++++ KQ+H  +L+ G+FFD +  S L   CAL  + S++YA  +F QI +
Sbjct: 2   LFTLLHN-NHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDE 60

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P+ + +NT+IR   +  +  ++ ++++ ++      P++FT+PFV+KA + L     G  
Sbjct: 61  PSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVE-PDKFTYPFVLKACSLLGVVDEGIQ 119

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +HG V K   E D+ + NSLI+ Y  CG++  A  VF  + +K V SW+++I        
Sbjct: 120 VHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGA------ 173

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
                                       AC +        W NE L +  ++        
Sbjct: 174 ---------------------------HACVE-------MW-NECLMLLGKMSSEGRCRV 198

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           +E T V+VLSAC  LG+ D+G  IH  + +   +LN  + TSLIDMY K G L+K L VF
Sbjct: 199 EESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVF 258

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  ++ + ++ MI+G A++G G+EAL +FS M E  + P+ V +  V  ACSH+GLV+
Sbjct: 259 KNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVE 318

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG   F  M+  + + P V+HY CMVD+LGR G+L EA E I+ M I P   +W +LL A
Sbjct: 319 EGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSA 378

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CK+H N+E+ + A  +L  L   N G  ++L+N+YAK  KWD+V+++R  +    L + P
Sbjct: 379 CKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTP 438

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G S IE   +++KF++ + S P    IY  + ++  +LK  GY+P+ S +L  V++E+ +
Sbjct: 439 GFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKK 498

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E+ L  HS++LAIA+GLI      P+RI +NLR+C DCHT  K IS +Y REI +RDR R
Sbjct: 499 ER-LKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLR 557

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF+ G+CSC DYW
Sbjct: 558 FHHFKNGSCSCKDYW 572


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 346/570 (60%), Gaps = 12/570 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           ++++ A+ +FD+    NL   N +   Y       ++  +F  L+ +S   P+  +    
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSA 343

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I + ++L     G++ HG V+++ FE    I N+LI  Y  C     A+ +F  +  K V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+WNS+++G+V+ G  + A E +  M  +N+    V+   ++S   +      G    EA
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQ------GSLFEEA 453

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  +Q  + VN D  T +S+ SAC  LGA+D+   I+  ++K GI+L+  L T+L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+++CG+ + A+ +F+++ +RDV  W+  I   AM G    A++LF  M E  +KP+ V 
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F   L ACSH GLV +G+  F  M  ++GV P   HY CMVD+LGRAGLL+EAV+ IE M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+ P   +W +LL AC++  NVE+A YA   +  L PE  G+ VLLSN+YA  G+W++++
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R  M+  GL+K PG SSI++ G+ H+F +G+ SHP    I + LDE+  R    G+VP
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S++L  V+E++ +   L+ HSE+LA+AYGLIS      IRIVKNLRVC DCH+ AK  
Sbjct: 754 DLSNVLMDVDEKE-KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK+YNREI+LRD  RFH+ R G CSC D+W
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 203/387 (52%), Gaps = 50/387 (12%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY 71
           LS  V++      P+ L  +   +  P    S +K CK I +LK  H  + + GL  D  
Sbjct: 10  LSPMVLATTTTTKPSLLNQSKCTKATP----SSLKNCKTIDELKMFHRSLTKQGLDNDVS 65

Query: 72  SASKLFT-PCALGTFSSLEYAREMFDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
           + +KL    C LGT  SL +A+E+F+        + +N+LIR Y+SS    ++ ++FL++
Sbjct: 66  TITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRM 125

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + NS   P+++TFPF + A A+      G  IHG+++K  +  DLF+ NSL+HFYA CG+
Sbjct: 126 M-NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL-YREMEMENVKPDEVTMVAVLS 248
           L  A  VF  + +++VVSW SMI G+ +  F + A++L +R +  E V P+ VTMV V+S
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK  DLE G                                           +++A +
Sbjct: 245 ACAKLEDLETGE------------------------------------------KVYAFI 262

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
           +  GI++N  + ++L+DMY KC  +D A  +F    + ++ + + M + +   G  REAL
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREAL 322

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSH 395
            +F+ M ++ V+P+ ++  + + +CS 
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 182/383 (47%), Gaps = 23/383 (6%)

Query: 56  QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           QIH  +++ G   D +  + L   +  C       L+ AR++FD++ + N+ +W ++I  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECG-----ELDSARKVFDEMSERNVVSWTSMICG 209

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE- 171
           Y+       +  +F ++V +    PN  T   VI A A+L     G+ ++  +  S  E 
Sbjct: 210 YARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEV 269

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           +DL +S +L+  Y  C  + +A  +F   G  ++   N+M S +V+ G   +A+ ++  M
Sbjct: 270 NDLMVS-ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
               V+PD ++M++ +S+C++ R++ +G+         H   L       +    +++  
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGK-------SCHGYVLRNGFESWDNICNALIDM 381

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
             +    D   +I  +M  + +        S++  Y + G +D A E F T+  +++  W
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSW 437

Query: 352 STMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           +T+I+G        EA+++F  MQ +  V  + VT  ++  AC H G +D  +  +  +E
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE 497

Query: 411 PVYGVVPGVKHYTCMVDMLGRAG 433
              G+   V+  T +VDM  R G
Sbjct: 498 K-NGIQLDVRLGTTLVDMFSRCG 519



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 104/189 (55%), Gaps = 15/189 (7%)

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           NEA+ +F  + ++  ++PD++TF   LSACA+  A   G+QIH  + K G   + ++  S
Sbjct: 116 NEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNS 174

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKP 381
           L+  Y +CG LD A +VF  +  R+V  W++MI G+A     ++A+DLF RM ++ +V P
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTP 234

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV--PGVK----HYTCMVDMLGRAGLL 435
           N+VT   V+ AC+    ++ G       E VY  +   G++      + +VDM  +   +
Sbjct: 235 NSVTMVCVISACAKLEDLETG-------EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 436 DEAVEFIEK 444
           D A    ++
Sbjct: 288 DVAKRLFDE 296



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 48/210 (22%)

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSRDV-FVWSTMIAGFAM 360
           H  + KQG+  +    T L+    + G   +L  A EVF   +S    F+++++I G+A 
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS------------------------ 396
            G   EA+ LF RM  + + P+  TF   L AC+ S                        
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171

Query: 397 -----------GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                      G +D  R  F++M         V  +T M+    R     +AV+   +M
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMSE-----RNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 446 ----PIVPGASVWGALLGACKIHENVELAE 471
                + P +     ++ AC   E++E  E
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGE 256


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 355/632 (56%), Gaps = 75/632 (11%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           +R +FD++ + NL+ WN ++ AY+ +     +  IF +L+  + + P+ FT P VIKA A
Sbjct: 160 SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 219

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC-VFVMIGKKDVVSWN 209
            L+   +GQ IHGM  K     D+F+ N+LI  Y  CG +  A   VF ++  K V SWN
Sbjct: 220 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWN 279

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +++ G+ Q     KA++LY +M    + PD  T+ ++L AC++ + L +G          
Sbjct: 280 ALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE-------I 332

Query: 270 HELQLSKNVNPDEFTFVSVLS-------------------------------ACAQLGAM 298
           H   L   +  D F  +S+LS                                 +Q G  
Sbjct: 333 HGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLP 392

Query: 299 DIGVQIHAKMKKQGIK------------------------LNC-----------YLTTSL 323
           D  + +  +M   GI+                        L+C           ++++S+
Sbjct: 393 DEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSI 452

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           IDMY K G +  +  +F  ++ +DV  W+ +IAG+ ++G G+EAL+LF +M    +KP+ 
Sbjct: 453 IDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 512

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            TFT +L ACSH+GLV++G  +FNQM  ++ + P ++HYTC+VDMLGRAG +D+A+  IE
Sbjct: 513 FTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIE 572

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
           +MP  P + +W +LL +C+IH N+ L E   + LLELEPE     VL+SN++A +GKWD+
Sbjct: 573 EMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDD 632

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V  +R  M+  GL+K+ GCS IEV G++H FL G+   P  +E+      +  ++ S GY
Sbjct: 633 VRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGY 692

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
            P+   +L  +EEED +   L  HSE+LAI++GL++     P+R+ KNLR+CGDCH  AK
Sbjct: 693 TPDTGSVLHDLEEED-KIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAK 751

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            ISK+ NR+I++RD  RFHHFR G CSC DYW
Sbjct: 752 FISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 166/392 (42%), Gaps = 79/392 (20%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           +++A  +     VG+ +H MV  S+ F +D  ++  +I  Y++CG  + +  VF  + +K
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           ++  WN+++S + +   FE A+ ++ E+  +   KPD  T+  V+ ACA   DL  G+  
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI- 229

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                                                    IH    K  +  + ++  +
Sbjct: 230 -----------------------------------------IHGMATKMDLVSDVFVGNA 248

Query: 323 LIDMYTKCGNLDKALE-VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           LI MY KCG +++A++ VF  + ++ V  W+ ++ G+A     R+ALDL+ +M ++ + P
Sbjct: 249 LIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP 308

Query: 382 NAVTFTNVLCACS-----HSGLVDEGRMFFNQM--EPVYGV------------------V 416
           +  T  ++L ACS     H G    G    N +  +P  G+                   
Sbjct: 309 DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLF 368

Query: 417 PGVKH-----YTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVE 468
            G++H     +  M+    + GL DEA+    +M    I P       + GAC     + 
Sbjct: 369 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 428

Query: 469 LA-EYACSHLLELEPENHGALVLLSNIYAKTG 499
           L  E  C  L     E+      + ++YAK G
Sbjct: 429 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGG 460


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/567 (40%), Positives = 333/567 (58%), Gaps = 49/567 (8%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F+ L  A ++FDQ+PQ N+ +W T+I AYS   +  Q  +  L L+      PN +T+  
Sbjct: 61  FNLLNDAHQLFDQMPQRNVISWTTMISAYSK-CKIHQKALELLVLMLRDGVRPNVYTYSS 119

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++A   +   R+   +H  +IK   E D+++ ++LI  +A  G+   A  VF  +   D
Sbjct: 120 VLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGD 176

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            + WNS+I GF Q    + A+EL++ M+      ++ T+                     
Sbjct: 177 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT-------------------- 216

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                 SVL AC  L  +++G+Q H  + K    L   L  +L+
Sbjct: 217 ----------------------SVLRACTGLALLELGMQAHVHIVKYDQDL--ILNNALV 252

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ A  VF+ +K RDV  WSTMI+G A  G  +EAL LF  M+ +  KPN +
Sbjct: 253 DMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYI 312

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GL+++G  +F  M+ +YG+ PG +HY CM+D+LG+AG LD+AV+ + +
Sbjct: 313 TIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNE 372

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P A  W  LLGAC++  N+ LAEYA   ++ L+PE+ G   +LSNIYA + KWD+V
Sbjct: 373 MECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSV 432

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
            E+RK MR  G+KKEPGCS IEVN +IH F+ G+ SHP   E+  KL++++ RL   GYV
Sbjct: 433 EEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYV 492

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P  + +LQ +E E + E +L  HSE+LA+A+GL+++   + IRI KNLR+CGDCH   KL
Sbjct: 493 PETNFVLQDLEGEQM-EDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKL 551

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSC 651
            SKL NR I++RD  R+HHF+ G CSC
Sbjct: 552 ASKLENRNIVIRDPIRYHHFQDGKCSC 578


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 350/610 (57%), Gaps = 43/610 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI- 110
           KQ+H +++R+    DPY AS   +L+  C      S + A+ +F+ +   N  +W  LI 
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYAKCG-----SFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 111 -----RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
                  +S S E        L  +       ++F    +I      +   +G+ +H + 
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAI-------DQFALATLISGCFNRMDLCLGRQLHSLC 397

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +KS     + +SNSLI  YA CGDL  A  VF  + ++D+VSW SMI+ + Q G   KA 
Sbjct: 398 LKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           E +  M   N     +T  A+L A  +    E G      L ++  +   K+V PD  T+
Sbjct: 458 EFFDGMATRNA----ITWNAMLGAYIQHGAEEDG------LKMYSAMLSQKDVTPDWVTY 507

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           V++   CA +GA  +G QI     K G+ LN  +  + I MY+KCG + +A ++F  +  
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +DV  W+ MI G++ +G G++A   F  M     KP+ +++  VL  CSHSGLV EG+++
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ M  V+G+ PG++H++CMVD+LGRAG L EA + I+KMP+ P A VWGALL ACKIH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           N ELAE A  H+ EL+  + G+ +LL+ IY+  GK D+ +++RK MR  G+KK PG S +
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV  ++H F A + SHP    I +K+DE++ ++   GYV   S   ++            
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEI------------ 795

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+A+G++S+    PI I+KNLR+CGDCHTV KLIS + +RE ++RD  RFHHF+
Sbjct: 796 HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFK 855

Query: 646 GGNCSCMDYW 655
            G+CSC DYW
Sbjct: 856 SGSCSCGDYW 865



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 191/404 (47%), Gaps = 42/404 (10%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           SL  A E+FD++P+ ++ +WNTL+  Y  +   +     F+ +  +    PN FTF  V+
Sbjct: 86  SLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVM 145

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           K+   L    +   + G+  K  F  D  +  +L+  +  CG +  A  +F  I +  + 
Sbjct: 146 KSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 205

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
             NSM++G+ +    + AIE + +M   +V    + M+A LS   + R         EAL
Sbjct: 206 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM-MIAALSQSGRVR---------EAL 255

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +  E+   K V  D  T+ S L+ACA+L ++  G Q+HAK+ +   +++ Y+ ++LI++
Sbjct: 256 GLVVEMH-RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG+  +A  VF++++ R+   W+ +I G   Y C  ++++LF++M+   +  +    
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 387 TNVLCAC-----------SHSGLVDEGR----MFFNQMEPVYGVVPGVKH---------- 421
             ++  C            HS  +  G     +  N +  +Y     +++          
Sbjct: 375 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434

Query: 422 -----YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                +T M+    + G + +A EF + M     A  W A+LGA
Sbjct: 435 RDIVSWTSMITAYSQIGNIIKAREFFDGMA-TRNAITWNAMLGA 477



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 19/380 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E F+ + + ++ +WN +I A S S    ++  + +++ +      +  T+   + 
Sbjct: 220 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM-HRKGVRLDSTTYTSSLT 278

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL     G+ +H  VI+S  + D +++++LI  YA CG    A  VF  +  ++ VS
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 338

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I G +Q   F K++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 339 WTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ------ 392

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L    N       S++S  A+ G +     + + M ++ I       TS+I  Y
Sbjct: 393 -LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI----VSWTSMITAY 447

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTF 386
           ++ GN+ KA E F  + +R+   W+ M+  +  +G   + L ++S M   K V P+ VT+
Sbjct: 448 SQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G           G++  V      + M  + G + EA +  +   
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFD--- 563

Query: 447 IVPGASV--WGALLGACKIH 464
           ++ G  V  W A++     H
Sbjct: 564 LLNGKDVVSWNAMITGYSQH 583



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 143/341 (41%), Gaps = 48/341 (14%)

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWNSMISGFVQ 217
           +A+HG ++       +F+ N+L+H Y  CG L+ A  +    I + +V++ N M++G+ +
Sbjct: 24  RALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAK 83

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A EL+  M   +V      M     A   +R L       + L  F  +  S +
Sbjct: 84  QGSLSDAEELFDRMPRRDVASWNTLMSGYFQA---RRFL-------DGLETFVSMHRSGD 133

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG------ 331
             P+ FTF  V+ +C  LG  ++  Q+     K     +  + T+L+DM+ +CG      
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFAS 193

Query: 332 -------------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
                                     +D A+E F  +  RDV  W+ MIA  +  G  RE
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TC 424
           AL L   M    V+ ++ T+T+ L AC+    +  G+    +   V   +P +  Y  + 
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK---VIRSLPQIDPYVASA 310

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           ++++  + G   EA      +      S W  L+G    +E
Sbjct: 311 LIELYAKCGSFKEAKRVFNSLQDRNSVS-WTVLIGGSLQYE 350



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 40/198 (20%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT- 342
                L +C   GA+     +H ++   G+    +L  +L+  Y  CG L  A  +    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK---------------------- 380
           +K  +V   + M+ G+A  G   +A +LF RM    V                       
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 381 ----------PNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
                     PNA TF  V+ +C   G   L  +    F + +  +   P V+  T +VD
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFD--FWGDPDVE--TALVD 181

Query: 428 MLGRAGLLDEAVEFIEKM 445
           M  R G +D A     ++
Sbjct: 182 MFVRCGYVDFASRLFSQI 199


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/678 (35%), Positives = 366/678 (53%), Gaps = 72/678 (10%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           SL+K C     L   + +H Q+   GL  +  +A+ L   +  C          AR +FD
Sbjct: 230 SLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKC-----RRPGDARRVFD 284

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  +   WN L+  Y+ +     +  + +++       P+  T   V+ A A      
Sbjct: 285 RMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALG 344

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             + +H   ++  F++ + +S +++  Y  CG +  A  VF  +  ++ VSWN+MI G+ 
Sbjct: 345 ACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYA 404

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE------------ 264
           + G   +A+ L++ M  E V   +V+++A L AC +   L+ GR  +E            
Sbjct: 405 ENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVN 464

Query: 265 -----------------ALSIFHEL----QLSKN-------------------------- 277
                            A  +F EL    ++S N                          
Sbjct: 465 VMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLEN 524

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD FT VS++ A A +        IH    +  +  + Y+ T+LIDMY KCG +  A 
Sbjct: 525 VKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIAR 584

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F++ + R V  W+ MI G+  +G G+ A++LF  M+ +   PN  TF +VL ACSH+G
Sbjct: 585 SLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAG 644

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVDEG+ +F+ M+  YG+ PG++HY  MVD+LGRAG L EA  FI+KMP+ PG SV+GA+
Sbjct: 645 LVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAM 704

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK+H+NVELAE +   + ELEPE     VLL+NIYA    W +V+ +R  M   GL+
Sbjct: 705 LGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQ 764

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S +++  EIH F +G ++H   K+IY++L +++  +K+ GYVP+   +  +  E+
Sbjct: 765 KTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSIHDV--ED 822

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           DV+ Q LN HSE+LAIAYGLI   P   I+I KNLRVC DCH   KLIS +  REI++RD
Sbjct: 823 DVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRD 882

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 883 IQRFHHFKDGKCSCGDYW 900



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 155/362 (42%), Gaps = 45/362 (12%)

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +RA +S ++   +   F  +   S   P   TF  ++K  A       G+A+H  +    
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              +   + +L + YA C     A  VF  +  +D V+WN++++G+ + G  E A+ +  
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 230 EMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            M+ E+  +PD VT+V+VL ACA  +                                  
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQ---------------------------------A 342

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L AC          ++HA   + G      ++T+++D+Y KCG +D A +VF  ++ R+ 
Sbjct: 343 LGACR---------EVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS 393

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+ MI G+A  G   EAL LF RM    V    V+    L AC   G +DEGR     
Sbjct: 394 VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHEL 453

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           +  + G+   V     ++ M  +    D A +  +++      S W A++  C  + + E
Sbjct: 454 LVRI-GLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS-WNAMILGCTQNGSSE 511

Query: 469 LA 470
            A
Sbjct: 512 DA 513



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
           A L A A + DL        AL+ F  +  +    P   TF S+L  CA    +  G  +
Sbjct: 194 ARLRAAASRSDLR------GALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAV 247

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           HA++  +G+       T+L +MY KC     A  VF  + +RD   W+ ++AG+A  G  
Sbjct: 248 HAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLA 307

Query: 365 REALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
             A+ +  RMQE    +P+AVT  +VL AC+ +  +   R   +      G    V   T
Sbjct: 308 EAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE-VHAFAVRGGFDEQVNVST 366

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            ++D+  + G +D A +  + M      S W A++
Sbjct: 367 AILDVYCKCGAVDSARKVFDGMQDRNSVS-WNAMI 400


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/621 (38%), Positives = 358/621 (57%), Gaps = 54/621 (8%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           IK C ++  +   KQ H Q    G   D + +S L       T   LE AR++FD+IP+ 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIV--MYSTCGKLEDARKVFDEIPKR 140

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-----SPYFPNEFTFPFVIKAAARLVQFR 156
           N+ +W ++IR Y  +   + +  +F  L+ +        F +      VI A +R+    
Sbjct: 141 NIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD--LAMAYCVFVMIGKKDVVSWNSMISG 214
           + ++IH  VIK  F+  + + N+L+  YA  G+  +A+A  +F  I  KD VS+NS++S 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G                                           NEA  +F  L  
Sbjct: 261 YAQSGM-----------------------------------------SNEAFEVFRRLVK 279

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +K V  +  T  +VL A +  GA+ IG  IH ++ + G++ +  + TS+IDMY KCG ++
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVE 339

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A + F  +K+++V  W+ MIAG+ M+G   +AL+LF  M ++ V+PN +TF +VL ACS
Sbjct: 340 TARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS 399

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GL  EG  +FN M+  +GV PG++HY CMVD+LGRAG L +A + I++M + P + +W
Sbjct: 400 HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIW 459

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL AC+IH+NVELAE + + L EL+  N G  +LLS+IYA  G+W +V  +R  M+  
Sbjct: 460 SSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNR 519

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GL K PG S +E+NGE+H FL G+  HP  ++IY  L E+  +L   GYV N S +   V
Sbjct: 520 GLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDV 579

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E  L +HSE+LAIA+G+++  P   + +VKNLRVC DCH V KLISK+ +RE +
Sbjct: 580 DEEE-KEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF+ G CSC DYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 43  SLIKQCKNI--KQLKQ-IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +  K L + IH+ +++ G        + L    A G    +  AR++FDQI 
Sbjct: 188 SVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  ++N+++  Y+ S    ++F +F +LV N     N  T   V+ A +     R+G+
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  VI+   EDD+ +  S+I  Y  CG +  A   F  +  K+V SW +MI+G+   G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR-DLEFGRWPN 263
              KA+EL+  M    V+P+ +T V+VL+AC+     +E  RW N
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/685 (35%), Positives = 380/685 (55%), Gaps = 66/685 (9%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           GH+ +P    +++K   +++  +    +H  + + G   + +  + L    A     S+ 
Sbjct: 36  GHELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALID--AYAVCGSVN 93

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            AR+ FD I   ++ +W  ++  Y+ +     S  +F ++     + PN FTF  V+KA 
Sbjct: 94  SARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRM-VGFNPNHFTFAGVLKAC 152

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
             L  F VG+++HG V+K+ +E DL++   L+  Y   GD      VF  + K DV+ W+
Sbjct: 153 IGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWS 212

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP------- 262
            MIS + Q     +A+EL+ +M    V P++ T  +VL +CA   +L+ G+         
Sbjct: 213 FMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKV 272

Query: 263 ----------------------NEALSIFHE-------------------------LQLS 275
                                 + ++ +F E                         L L 
Sbjct: 273 GLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLY 332

Query: 276 KN-----VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           KN     V   E T+ SVL ACA L AM++G QIH+   K     +  +  +LIDMY KC
Sbjct: 333 KNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKC 392

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G++  A  VF  +  RD   W+ MI+G++M+G   EAL  F  MQE +  PN +TF ++L
Sbjct: 393 GSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSIL 452

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACS++GL+D G+ +F  M   YG+ P ++HYTCMV +LGR+G LD+AV+ IE++P+ P 
Sbjct: 453 SACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPN 512

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VW ALLGAC IH +V+L   +   +L+++P++    VLLSNIYA+T +W++V+ +RK 
Sbjct: 513 VKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKF 572

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+KKEPG S IE  G +H F  G++SHP  K I   L+ +  + +  GYVP+ + +
Sbjct: 573 MKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAV 632

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L+ V E+D +++ L +HSERLA+A+GLI       IRI+KNLR+C DCH+  KLISK+  
Sbjct: 633 LRDV-EDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQ 691

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R+I++RD  RFHHF+ G CSC DYW
Sbjct: 692 RDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P  N  ++ TLI+ Y  S +  +   +F + V+   +  N F F  ++K    +    +
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSR-VHREGHELNPFVFTTILKLLVSVECAEL 59

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
             ++H  + K   E + F+  +LI  YA+CG +  A   F  I  KD+VSW  M++ + +
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
              F+ +++L+ EM M                                            
Sbjct: 120 NDRFQDSLQLFAEMRM------------------------------------------VG 137

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
            NP+ FTF  VL AC  L A  +G  +H  + K   +++ Y+   L+D+YTK G+ +  L
Sbjct: 138 FNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVL 197

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +   DV  WS MI+ +A     REA++LF +M+ A V PN  TF +VL +C+   
Sbjct: 198 RVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIE 257

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            +  G+     +  V G+   V     ++D+  + G LD +++   ++P
Sbjct: 258 NLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/683 (36%), Positives = 380/683 (55%), Gaps = 85/683 (12%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFDQ 97
           +++ C  +  L   +++H  ++R G   D    + L T    C    FS    AR +FD+
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-DIFS----ARLVFDR 255

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF--PNEFTFPFVIKAAARLVQF 155
           +P+ +  +WN +I  Y  +   ++   +F  +     +F  P+  T   VI A   L   
Sbjct: 256 MPRRDRISWNAMISGYFENDVCLEGLRLFFMM---REFFVDPDLMTMTSVISACEALGDE 312

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           R+G+ +HG VIK+ F  ++ ++NSLI  ++  G    A  VF  +  KD+VSW +MISG+
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG---------------- 259
            + G  EKA+E Y  ME E V PDE+T+ +VLSACA    L+ G                
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 260 -------------RWPNEALSIFHEL-----------------------------QLSKN 277
                        R  ++AL +FH +                             Q+  +
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P+  T VSVLSACA++GA+  G +IHA   + G+  + +L  +L+DMY +CG ++ A 
Sbjct: 493 LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAW 552

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
             F++ + +DV  W+ ++ G+A  G G  A++LF +M E+ V P+ +TFT++LCACS SG
Sbjct: 553 NQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           +V +G  +F  ME  + + P +KHY  +VD+LGRAG L++A EFI+KMPI P  ++WGAL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+I++NVEL E A  H+ E++ ++ G  +LL N+YA +GKWD V+ +RK MR + L 
Sbjct: 672 LNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLT 731

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            +PGCS +EV G++H FL G+  HP  KEI + L+    ++++ G   ++         +
Sbjct: 732 VDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDS-----RRD 786

Query: 578 DVQEQALNL---HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           D+      +   HSERLAIA+GLI+  P  PI + KNL +C +CH   K ISK+  R I 
Sbjct: 787 DIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGIS 846

Query: 635 LRDRYRFHHFRGGNCSCMD--YW 655
           +RD  +FHHF+ G CSC D  YW
Sbjct: 847 VRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 63/379 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L  A  +F ++ + +L++WN L+  Y+ +    ++  ++ ++++     P+ +TFP 
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR-PDVYTFPC 200

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++    L     G+ +H  VI+  FE D+ + N+LI  Y  CGD+  A  VF  + ++D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---- 260
            +SWN+MISG+ +     + + L+  M    V PD +TM +V+SAC    D   GR    
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 261 --------------------------WPNEALSIFHELQLS------------------- 275
                                     W +EA  +F +++                     
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCW-DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 276 -----------KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                      + V PDE T  SVLSACA LG +D G+ +H    + G+     +  SLI
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLI 439

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY+KC  +DKALEVFH + +++V  W+++I G  +     EAL  F +M    +KPN+V
Sbjct: 440 DMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSV 498

Query: 385 TFTNVLCACSHSGLVDEGR 403
           T  +VL AC+  G +  G+
Sbjct: 499 TLVSVLSACARIGALSCGK 517



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 89/358 (24%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +H  V K+     + + N+L+  +   GDL  A+ VF  + ++D+ SWN ++ G+ +
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G+F++A+ LY  M    ++PD  T   VL  C    DL  GR                 
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR----------------- 215

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                    ++H  + + G + +  +  +LI MY KCG++  A 
Sbjct: 216 -------------------------EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC---- 393
            VF  +  RD   W+ MI+G+       E L LF  M+E  V P+ +T T+V+ AC    
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 394 -------------------------------SHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
                                          S  G  DE  M F++ME        +  +
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME-----FKDLVSW 365

Query: 423 TCMVDMLGRAGLLDEAVE---FIEKMPIVPGASVWGALLGACK----IHENVELAEYA 473
           T M+    + GL ++AVE    +E   +VP      ++L AC     + + + L E+A
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFA 423



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 20/274 (7%)

Query: 41  VFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           + S++  C  +  L +   +H    RTGL      A+ L   ++ C       ++ A E+
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC-----RCIDKALEV 454

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F +IP  N+ +W ++I     +    ++   F Q++ +    PN  T   V+ A AR+  
Sbjct: 455 FHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLK--PNSVTLVSVLSACARIGA 512

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ IH   +++    D F+ N+L+  Y  CG +  A+  F    +KDV SWN +++G
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTG 571

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G    A+EL+ +M   +V PDE+T  ++L AC++   +       + L  F  ++ 
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV------TDGLEYFESMEH 625

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
             ++ P+   + SV+    + G ++   +   KM
Sbjct: 626 KFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM 659



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 223 KAIELYREMEMENVKPDEVTM----VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           + I L +  E+  + P  +T       +L  C K  DLE      +AL     +Q    V
Sbjct: 39  RQISLRKHHEISVLNPSSITAQNPNSLILELCLKG-DLE------KALIHLDSMQ-ELQV 90

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           + +E T++++L  C    A   G ++H+ + K   +L   L  +L+ M+ + G+L +A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RD+F W+ ++ G+A  G   EAL+L+ RM    ++P+  TF  VL  C   GL
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC--GGL 208

Query: 399 VDEGRMFFNQMEPV-YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            D  R     +  + YG    V     ++ M  + G +  A    ++MP     S W A+
Sbjct: 209 PDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS-WNAM 267

Query: 458 LGA 460
           +  
Sbjct: 268 ISG 270


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/673 (35%), Positives = 367/673 (54%), Gaps = 66/673 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +L+   K+   + +IH  M+ TG+F    S +KL    A      +E AR++FD+ PQ  
Sbjct: 12  TLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYA--RLGHIESARQVFDKSPQCG 69

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +  WN +I AYS      ++  ++ ++  +    P+  T+  V+KA  R +  R G+   
Sbjct: 70  VDAWNAMIIAYSRRGAMFEALSLYHRMA-SEGVRPDSSTYTVVLKACTRSLDLRSGEETW 128

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              +   + DD+F+  ++++ YA CG +  A  VF  +G++D+V W +MI+G  Q G   
Sbjct: 129 RQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR 188

Query: 223 KAIELYREMEMENVKP-----------------------------------DEVTMVAVL 247
           +A+++YR+M  + V+                                    D +   +++
Sbjct: 189 EAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLV 248

Query: 248 SACAKKRDLEFGR-------------------------WPNEALSIFHELQLSKNVNPDE 282
              AK   LE                            +   AL +  ++Q S    PD 
Sbjct: 249 DMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQ-SFGYKPDS 307

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            + VSVL AC+Q+G + +G  +H  + ++ +  +C  +T++IDMY+KCG+L  A  VF  
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQ 366

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +  RD   W+ +IA + ++G G EAL LF +M+E  VKP+  TF ++L A SHSGLV++G
Sbjct: 367 ISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKG 426

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           R +F+ M   Y + P  KHY CMVD+L RAG ++EA E IE M   PG ++W ALL  C 
Sbjct: 427 RYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCL 486

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H    + E A   +LEL P++ G   L+SN +A   +WD V+E+RK M+ +G+KK PG 
Sbjct: 487 NHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGY 546

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S +EVNG++H FL  + SH   +EI   L ++   +K+ GYVP    +L  +EEE V+E+
Sbjct: 547 SVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEE-VKER 605

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSERLAIA+GL++  P   + I KNLRVCGDCH   K ISK+ NREI++RD  RFH
Sbjct: 606 MLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFH 665

Query: 643 HFRGGNCSCMDYW 655
           HF+ G CSC DYW
Sbjct: 666 HFKDGVCSCGDYW 678


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 366/621 (58%), Gaps = 57/621 (9%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +++ +C   + I++ +++HT M++T      Y  ++L   +  C       L  AREMFD
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKC-----DCLGDAREMFD 149

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++PQ N+ +W  +I AYS      ++  +F++++  S   PN FTF  ++ +    + F 
Sbjct: 150 EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFE 208

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH + IK ++E  +F+ +SL+  YA  G +  A+ VF  + ++DVV+  ++ISG+ 
Sbjct: 209 TGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 268

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL +F +LQ+ +
Sbjct: 269 QMGLDE-----------------------------------------EALKLFRQLQI-E 286

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            +N +  T+ SVL+A + L A++ G Q+H+ + + G      L  SLIDMY+KCGN+  A
Sbjct: 287 GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 346

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH 395
             +F ++  R    W+ M+ G++ +G  RE L+LF  M+E  KVKP+++T+  VL  CSH
Sbjct: 347 RRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSH 406

Query: 396 SGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             L D G  +F+N +    G+ P + HY C+VD+LGRAG ++EA +FI+KMP VP A++W
Sbjct: 407 GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIW 466

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LLG+C++H +VE+       LLELEPEN G  V+LSN+YA  GKW+++  +R  M+  
Sbjct: 467 GSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 526

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            + KEPG S +E++  +H F A + +HP  +E+  K+ E+  + K  GYVP+ S +L  V
Sbjct: 527 AVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDV 586

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE  +E+ L  HSE+LA+A+GLI+      IR++KNLR+C DCH+ AK +S+LY R ++
Sbjct: 587 DEEQ-KEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVI 645

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD+ RFH+  GG CSC DYW
Sbjct: 646 LRDKNRFHNIVGGVCSCGDYW 666


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 364/620 (58%), Gaps = 57/620 (9%)

Query: 44  LIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           L+ +C N   +++ +++H  M++T      Y +++L   +T C       L  AR +FD+
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKC-----ECLGCARHVFDE 70

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + N+ +W  +I  YS      ++  +F+Q++  S   PNEFTF  V+ +      F +
Sbjct: 71  MRERNVVSWTAMISGYSQRGFASEALHLFVQML-RSDTEPNEFTFATVLSSCTGFSGFEL 129

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  + K ++E+ +F+ +SL+  YA  G +  A  VF  + ++DVVS  ++ISG+ Q
Sbjct: 130 GRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 189

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E+A+EL                              F R   E +S          
Sbjct: 190 LGLDEEALEL------------------------------FCRLQREGMS---------- 209

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
              +  T+ S+L+A + L A+D G Q+H+ + +  +     L  SLIDMY+KCGNL+ A 
Sbjct: 210 --SNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYAR 267

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSHS 396
           ++F+ +  R V  W+ M+ G++ +G G E + LF  M+E  KVKP++VTF  VL  CSH 
Sbjct: 268 KIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHG 327

Query: 397 GLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           GL D+G  MF   M     +  G++HY C++D+LGRAG ++EA E I+KMP  P A++WG
Sbjct: 328 GLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWG 387

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           +LLGAC++H N  + E+    LLE+EPEN G  V+LSN+YA  G+W++V  +R+ M    
Sbjct: 388 SLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKA 447

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           + KEPG S IE++  IH F A + SHP  +E++ K+ E++ + K  GYVP++S +L  V+
Sbjct: 448 VIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVD 507

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE  +E+ L  HSE+LA+A+GLIS     P+R++KNLR+C DCH  AK +SK+Y R++ +
Sbjct: 508 EEQ-KEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSI 566

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD+ RFHH  GG CSC DYW
Sbjct: 567 RDKNRFHHVAGGICSCGDYW 586


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 354/618 (57%), Gaps = 14/618 (2%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + S+ K C +++ +   K++H   +R G   D    + L      G     E AR +F+ 
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALID--MYGKCRCSEGARLVFEG 138

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P  ++ +W ++   Y +     ++   F ++  N    PN  T   ++ A   L   + 
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGER-PNSVTVSSILPACTDLKDLKS 197

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG V+++    ++F+S++L++ YA C  +  A  VF  + ++D VSWN +I+ +  
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
               EK + ++  M  E V  +  +  AV+  C     ++ GR   +AL +   +Q S  
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGC-----MQNGR-TEKALEVLSRMQNS-G 310

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P++ T  SVL AC  L ++  G QIH  + +     +   TT+L+ MY KCG+L+ + 
Sbjct: 311 FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSR 370

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +  RD   W+TMI   +M+G G EAL LF  M ++ V+PN+VTFT VL  CSHS 
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSR 430

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVDEG + F+ M   + V P   H++CMVD+L RAG L+EA EFI+KMPI P A  WGAL
Sbjct: 431 LVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGAL 490

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LG C++++NVEL   A + L E+E +N G  VLLSNI      W   SE RK MR  G+ 
Sbjct: 491 LGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVT 550

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGCS I+V   +H F+ G+ S+    EIY  LD +  +++  GY+PN   +LQ V++E
Sbjct: 551 KNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQE 610

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E+ L  HSE+LA+A+G++++     IR+ KNLR+CGDCH   K ++K+   +I++RD
Sbjct: 611 E-KEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRD 669

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHFR G CSC D+W
Sbjct: 670 SLRFHHFRDGLCSCQDFW 687



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 182/426 (42%), Gaps = 95/426 (22%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ AR +FD+IPQP+L TW  LI A +     +++   +    + +   P++     V K
Sbjct: 27  LQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAK 86

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A L      + +H   I+  F  D+ + N+LI  Y  C     A  VF  +  +DV+S
Sbjct: 87  ACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVIS 146

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W SM S +V  G   +A+  +R+M +   +P+ VT+ ++L AC   +DL+ GR       
Sbjct: 147 WTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR------- 199

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                                              ++H  + + G+  N +++++L++MY
Sbjct: 200 -----------------------------------EVHGFVVRNGMGGNVFVSSALVNMY 224

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGF----------------------------- 358
             C ++ +A  VF ++  RD   W+ +I  +                             
Sbjct: 225 ASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWN 284

Query: 359 -AMYGC---GR--EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
             + GC   GR  +AL++ SRMQ +  KPN +T T+VL AC++   +  G+        +
Sbjct: 285 AVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQ-------I 337

Query: 413 YGVVPGVKHY--------TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +G +   +H+        T +V M  + G L+ +      M      S W  ++ A  +H
Sbjct: 338 HGYI--FRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVS-WNTMIIATSMH 394

Query: 465 ENVELA 470
            N E A
Sbjct: 395 GNGEEA 400



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 43/225 (19%)

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKP 238
            I  Y+  GDL  A  +F  I + D+ +W  +IS   + G   +AI+ Y +   +N V+P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
           D++ +++V  ACA  RD                +  +K V+ D   F             
Sbjct: 77  DKLLLLSVAKACASLRD----------------VMNAKRVHEDAIRF------------- 107

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
                        G   +  L  +LIDMY KC   + A  VF  +  RDV  W++M + +
Sbjct: 108 -------------GFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCY 154

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
              G  REAL  F +M     +PN+VT +++L AC+    +  GR
Sbjct: 155 VNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L    I +Y+  G+L +A  +F  +   D+  W+ +I+    +G   EA+  ++  +  
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 378 K-VKPNAVTFTNVLCAC-SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
             V+P+ +   +V  AC S   +++  R+  + +   +G    V     ++DM G+    
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIR--FGFCSDVLLGNALIDMYGKCRCS 129

Query: 436 DEAVEFIEKMP 446
           + A    E MP
Sbjct: 130 EGARLVFEGMP 140


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/609 (37%), Positives = 352/609 (57%), Gaps = 50/609 (8%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           +L+K+C   K L Q   +H  +L++    D    + L    A     SLE AR++F+++P
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMP 122

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q +  TW TLI  YS    P  + + F Q++    Y PNEFT   VIKAAA   +   G 
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGH 181

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG  +K  F+ ++ + ++L+  Y   G +  A  VF  +  ++ VSWN++I+G  +  
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             EKA+EL++ M                                          L     
Sbjct: 242 GTEKALELFQGM------------------------------------------LRDGFR 259

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P  F++ S+  AC+  G ++ G  +HA M K G KL  +   +L+DMY K G++  A ++
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 319

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  RDV  W++++  +A +G G+EA+  F  M+   ++PN ++F +VL ACSHSGL+
Sbjct: 320 FDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLL 379

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DEG  ++  M+   G+VP   HY  +VD+LGRAG L+ A+ FIE+MPI P A++W ALL 
Sbjct: 380 DEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLN 438

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H+N EL  YA  H+ EL+P++ G  V+L NIYA  G+W++ + +RK M+ SG+KKE
Sbjct: 439 ACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKE 498

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P CS +E+   IH F+A +  HP  +EI  K +E++A++K  GYVP+ SH++  V++++ 
Sbjct: 499 PACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE- 557

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L  HSE++A+A+ L++  P   I I KN+RVCGDCHT  KL SK+  REI++RD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 640 RFHHFRGGN 648
           RFHHF+  +
Sbjct: 618 RFHHFKDAS 626



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 113/261 (43%), Gaps = 44/261 (16%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           +  D   + ++L  C     +  G  +HA + +   + +  +  +L++MY KCG+L++A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA----- 392
           +VF  +  RD   W+T+I+G++ +    +AL  F++M      PN  T ++V+ A     
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 393 ---CSHS---------------------------GLVDEGRMFFNQMEPVYGVVPGVKHY 422
              C H                            GL+D+ ++ F+ +E    V      +
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV-----SW 230

Query: 423 TCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
             ++    R    ++A+E  + M      P    + +L GAC     +E  ++  +++++
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 480 L-EPENHGALVLLSNIYAKTG 499
             E     A   L ++YAK+G
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSG 311


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/651 (35%), Positives = 360/651 (55%), Gaps = 78/651 (11%)

Query: 39  HPVF-SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYS---------------------- 72
           H VF S++K C  +  L   + +H  ++R GL FD Y+                      
Sbjct: 106 HNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRL 165

Query: 73  -ASKLFTPCALGTFS-------SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
            A ++F      T S       S +  R++F+ +P+ +L +WNT+I   + +    ++  
Sbjct: 166 GAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
           +  ++   +   P+ FT   V+   A  V    G+ IHG  I+   + D+++++SLI  Y
Sbjct: 226 MIREM-GGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMY 284

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           A C  +A +  VF ++ ++D +SWNS+I+G VQ G F+                      
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD---------------------- 322

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
                              E L  F ++ ++K + P  ++F S++ ACA L  + +G Q+
Sbjct: 323 -------------------EGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHLGKQL 362

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  + + G   N ++ +SL+DMY KCGN+  A ++F  ++ RD+  W+ MI G A++G  
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            +A++LF +M+   +KPN V F  VL ACSH GLVDE   +FN M   +G+ PGV+HY  
Sbjct: 423 PDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAA 482

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           + D+LGRAG L+EA +FI  M I P  S+W  LL AC++H N+++AE   + +LE++P N
Sbjct: 483 VSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNN 542

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            GA +LL+NIY+   +W   ++ R  MR  G++K P CS IEV  +++ F+AG+ SHP  
Sbjct: 543 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCY 602

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           ++I   ++ +V  ++  GYVP+ S +   VEEE  ++  +  HSERLAI +G+I+     
Sbjct: 603 EKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQ-KKYLVCSHSERLAIVFGIINTPAGM 661

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IR+ KNLRVC DCHT  K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 662 TIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 128/324 (39%), Gaps = 73/324 (22%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P+++L  F  + L+  + PD   F SVL +CA L  +++G  +H  + + G+  + Y   
Sbjct: 87  PHQSLGSFIGM-LASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGN 145

Query: 322 SLIDMYTKCGNL--------------------------------DKALEVFHTVKSRDVF 349
           +L++MY+K   L                                D   ++F  +  +D+ 
Sbjct: 146 ALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLV 205

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC---------------ACS 394
            W+T+IAG A  G   E L +   M  A +KP++ T ++VL                 CS
Sbjct: 206 SWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCS 265

Query: 395 HSGLVDEGRMFFNQMEPVYG----VVPGVKHYTCMVDMLG-----------RAGLLDEAV 439
               +D      + +  +Y     V    + +T + +  G           + GL DE +
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325

Query: 440 EFIEKM---PIVPGASVWGALLGAC----KIHENVELAEYACSHLLELEPENHGALVLLS 492
            F  +M    I P +  + +++ AC     +H   +L  Y   +  +   EN      L 
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD---ENIFIASSLV 382

Query: 493 NIYAKTGKWDNVSELRKHMRVSGL 516
           ++YAK G      ++   MR+  +
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDM 406


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 355/618 (57%), Gaps = 55/618 (8%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           ++K C   +N    K +H  +L+T    D Y      +L+T C        + A   F  
Sbjct: 153 VLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCG-----DNDDAWRAFGD 207

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ ++  W+ +I  ++ S +  ++  IF Q+   +   PN+FTF  V++A+A +    +
Sbjct: 208 MPKNDVIPWSFMISRFAQSGQSEKALEIFCQM-RRAFVIPNQFTFSSVLQASADIESLDL 266

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + IHG  +K+    D+F+SN+L+  YA CG +  +  +F  +  ++ VSWN++I  +VQ
Sbjct: 267 SKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQ 326

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E+A+ L+  M                                          L   
Sbjct: 327 LGDGERALSLFSNM------------------------------------------LRYQ 344

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V   E T+ S+L ACA L A+++G+Q+H    K     +  +  +LIDMY KCG++  A 
Sbjct: 345 VQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDAR 404

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  +  RD   W+ +I G++M+G G EA+ +F+ M+E K KP+ +TF  VL ACS++G
Sbjct: 405 FMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTG 464

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            +DEG+ +F  M+  YG+ P ++HYTCMV ++GR+G LD+AV+FIE +P  P   +W AL
Sbjct: 465 RLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRAL 524

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC IH +VEL   +   +LELEP +  + VLLSNIYA+  +W NV+ +RKHM+  G+K
Sbjct: 525 LGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVK 584

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPG S IE  G +H F   ++SH   K I   L+ +  + +  GY P  + +L L  E+
Sbjct: 585 KEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVL-LDVED 643

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           D +E+ L LHSERLA+A+GL+ +    PIRI+KNLR+C DCH+V KLISK+  R+I++RD
Sbjct: 644 DEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRD 703

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF  G+CSC DYW
Sbjct: 704 MNRFHHFENGSCSCADYW 721



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 210/436 (48%), Gaps = 52/436 (11%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           GH+ +P    +++K   +++     + +H  +L+ G   + +  + L    ++    S+ 
Sbjct: 41  GHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSM- 99

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            ARE+FD+I   ++ +W  +I +Y+ +    ++   F Q+   + + PN FTF  V+KA 
Sbjct: 100 -AREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRV-AGFKPNNFTFAGVLKAC 157

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
             L  F  G+ +H  V+K+++E DL++   L+  Y  CGD   A+  F  + K DV+ W+
Sbjct: 158 LGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWS 217

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
            MIS F Q G  EKA+E++ +M    V P++ T  +VL A A   D+E            
Sbjct: 218 FMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA---DIE------------ 262

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                                      ++D+   IH    K G+  + +++ +L+  Y K
Sbjct: 263 ---------------------------SLDLSKTIHGHALKAGLSTDVFVSNALMACYAK 295

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG +++++E+F  +  R+   W+T+I  +   G G  AL LFS M   +V+   VT++++
Sbjct: 296 CGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSI 355

Query: 390 LCACSHSGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           L AC+    ++ G ++     + +YG    V +   ++DM  + G + +A  F+  M  +
Sbjct: 356 LRACATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDA-RFMFDMLDL 412

Query: 449 PGASVWGALLGACKIH 464
                W A++    +H
Sbjct: 413 RDKVSWNAIICGYSMH 428



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 163/353 (46%), Gaps = 44/353 (12%)

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +FD++P+ N  ++ TLI  Y+ S + I++F +F +L +   +  N F F  V+K    + 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARL-HGEGHELNPFVFTTVLKLLVSME 60

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
              +G+ +HG V+K  +  + FI  +LI  Y++ G ++MA  VF  I  KD+VSW  MI+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            + +   F +A+E + +M +   KP+  T   VL AC                       
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLG--------------------- 159

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                                L   D G  +H  + K   + + Y+   L+++YT+CG+ 
Sbjct: 160 ---------------------LQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDN 198

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           D A   F  +   DV  WS MI+ FA  G   +AL++F +M+ A V PN  TF++VL A 
Sbjct: 199 DDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQAS 258

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +    +D  +          G+   V     ++    + G +++++E  E + 
Sbjct: 259 ADIESLDLSKTIHGHALKA-GLSTDVFVSNALMACYAKCGCIEQSMELFEALS 310


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 338/583 (57%), Gaps = 59/583 (10%)

Query: 88   LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
            ++ + ++F Q+P  +  +WNT+I     +     +  +  ++V   P F N+ TF   + 
Sbjct: 470  MQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAF-NKLTFSIALV 528

Query: 148  AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---- 203
             A+ L    +G+ IH  V+K    DD F+ NSLI  Y  CG++  A  +F  + ++    
Sbjct: 529  LASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMM 588

Query: 204  -----------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
                       + VSW+SM+SG+VQ G FE A++ +  M                     
Sbjct: 589  NSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFM--------------------- 627

Query: 253  KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
                                 +   V  D+FT  SV+SACA  G +++G Q+H  ++K G
Sbjct: 628  ---------------------ICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIG 666

Query: 313  IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
              L+ +L +S+IDMY KCG+L+ A  +F+  K R+V +W++MI+G A++G GREA+ LF 
Sbjct: 667  HGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFE 726

Query: 373  RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
             M    + PN V+F  VL ACSH+GL++EG  +F  M  VYG+ PG +H+TCMVD+ GRA
Sbjct: 727  LMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRA 786

Query: 433  GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
            G L+E  EFI    I   +SVW + L +C++H+N+E+  + C  LLELEP + G  +L S
Sbjct: 787  GRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFS 846

Query: 493  NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
            +I A   +W+  +++R  M+  G+KK P  S I++  ++H F+ G+ SHP   +IYS LD
Sbjct: 847  SICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLD 906

Query: 553  EIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNL 612
            E++ RLK  GY  + + ++Q VE+E  ++  L  HSE+LAIAYG+IS  P  PIR++KNL
Sbjct: 907  ELIGRLKEIGYSTDVTPVMQDVEQEQ-RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNL 965

Query: 613  RVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            RVC DCH   K  S+L  REI++RD +RFHHF+ G+CSC DYW
Sbjct: 966  RVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 203/400 (50%), Gaps = 42/400 (10%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +LE A +MF++IPQ ++++W  LI  ++          +F ++  +    PN+FT   V+
Sbjct: 336 NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKM-QDQGVCPNQFTLSIVL 394

Query: 147 KAAARLVQ-FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           K+ +  V   R+G+ IHG ++++  + D  ++NS++ +Y  C     A  +F ++ +KD 
Sbjct: 395 KSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDT 454

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWN M+S ++Q G  +K+++L+R++  ++       +  ++    ++  LE       A
Sbjct: 455 VSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAA 514

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
              F++L           TF   L   + L  + +G QIH ++ K G+  + ++  SLID
Sbjct: 515 GPAFNKL-----------TFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLID 563

Query: 326 MYTKCGNLDKALEVF----------HTVKSRDVFV-----WSTMIAGFAMYGCGREALDL 370
           MY KCG ++KA  +F          ++ +S D  V     WS+M++G+   G   +AL  
Sbjct: 564 MYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKT 623

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH------YTC 424
           FS M  ++V+ +  T T+V+ AC+ +G+++ GR        V+G +  + H       + 
Sbjct: 624 FSFMICSQVEVDKFTLTSVVSACASAGVLELGR-------QVHGYIQKIGHGLDVFLGSS 676

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           ++DM  + G L++A   I          +W +++  C +H
Sbjct: 677 IIDMYVKCGSLNDA-WLIFNQAKDRNVVLWTSMISGCALH 715



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 20/221 (9%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLY--------- 104
           KQIHTQ+L+ G+  D +  + L    C  G    +E A  +F  +PQ +           
Sbjct: 540 KQIHTQVLKVGVLDDGFVRNSLIDMYCKCG---EMEKASVIFKHLPQESSMMNSEESCDD 596

Query: 105 ------TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
                 +W++++  Y  +     +   F   +  S    ++FT   V+ A A      +G
Sbjct: 597 AVVESVSWSSMVSGYVQNGRFEDALKTF-SFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG + K     D+F+ +S+I  Y  CG L  A+ +F     ++VV W SMISG    
Sbjct: 656 RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALH 715

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           G   +A+ L+  M  E + P+EV+ V VL+AC+    LE G
Sbjct: 716 GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEG 756



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 78/354 (22%)

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           ++FL    +S ++P    F      +   + +   + +H  +IK+         N L++ 
Sbjct: 276 LLFLGFSLSSYFYPPLXYFSSTFSDS---MNYPNSEVLHAKLIKNGCVG--IRGNHLLNL 330

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           YA   +L  A+ +F  I + DV SW  +ISGF + G     + L+ +M+ + V P++ T+
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTL 390

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
             VL +C                        S NVN                    IG  
Sbjct: 391 SIVLKSC------------------------SSNVNDSR-----------------IGKG 409

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKC-------------------------------GN 332
           IH  + + G+ L+  L  S++D Y KC                               G+
Sbjct: 410 IHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGD 469

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + K++++F  +  +D   W+TMI G    GC R AL+L  +M  A    N +TF+  L  
Sbjct: 470 MQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVL 529

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            S   ++  G+    Q+  V GV+        ++DM  + G +++A    + +P
Sbjct: 530 ASSLSVLGLGKQIHTQVLKV-GVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLP 582


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 348/639 (54%), Gaps = 65/639 (10%)

Query: 23  PNPTTLTVN---NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT- 78
           PNP+ LT           PHP          ++  +Q+H + L+     +P+  + L T 
Sbjct: 113 PNPSHLTFPIALKSASRLPHP----------LRAGEQLHARSLKLPSHTNPHVLTSLLTL 162

Query: 79  --PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
              C L     L  A+ +FD++P P+  +W  LI AY  + +  ++  +      N    
Sbjct: 163 YARCGL-----LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MR 216

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT   V+ A AR+     G+ +     +      +F++ + +  Y  CG++A A  V
Sbjct: 217 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 276

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD V+W +M+ G+   G                                     
Sbjct: 277 FDKMRDKDAVAWGAMVGGYASNGH------------------------------------ 300

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                P EAL +F  +Q ++ V PD +     LSAC +LGA+D+G Q    +       N
Sbjct: 301 -----PREALDLFLAMQ-AEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 354

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+LIDMY KCG+  +A  VF  ++ +D+ VW+ MI G  M G  + A  L  +M++
Sbjct: 355 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 414

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + VK N  TF  +LC+C+H+GL+ +GR +F+ M  +Y + P ++HY C+VD+L RAGLL 
Sbjct: 415 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 474

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA + I+ MP+   A + GALLG CKIH N ELAE+  + L+ LEP N G  V+LSNIY+
Sbjct: 475 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 534

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             G+W++ ++LR  M+  G++K P CS +E  G++H+F  G+ SHPL  +IY KLDE+  
Sbjct: 535 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 594

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            +K+ GY P    ++  VE+E+ +E  L  HSE+LAIA+ L+   P + IR+ KNLRVC 
Sbjct: 595 EMKTMGYEPTTEVVMFDVEDEE-KEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCS 653

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHT  KLIS++ +REI++RD  RFH FR G+CSC DYW
Sbjct: 654 DCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/505 (42%), Positives = 317/505 (62%), Gaps = 44/505 (8%)

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +   R+G+ IH +VI+S F   +++ NSL+H YA CGD+A AY VF  + +KD+V+WNS+
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+GF + G                                          P EAL+++ E
Sbjct: 61  INGFAENG-----------------------------------------KPEEALALYTE 79

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +  SK + PD FT VS+LSACA++GA+ +G ++H  M K G+  N + +  L+D+Y +CG
Sbjct: 80  MN-SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG 138

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVL 390
            +++A  +F  +  ++   W+++I G A+ G G+EA++LF  M+  + + P  +TF  +L
Sbjct: 139 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 198

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSH G+V EG  +F +M   Y + P ++H+ CMVD+L RAG + +A E+I+ MP+ P 
Sbjct: 199 YACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPN 258

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LLGAC +H + +LAE+A   +L+LEP + G  VLLSN+YA   +W +V ++RK 
Sbjct: 259 VVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQ 318

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M   G+KK PG S +EV   +H+FL G+ SHP    IY+KL E+  RL+S GYVP  S++
Sbjct: 319 MLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNV 378

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
              VEEE+ +E A+  HSE++AIA+ LIS     PI +VKNLRVC DCH   KL+SK+YN
Sbjct: 379 YVDVEEEE-KENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYN 437

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RDR RFHHF+ G+CSC DYW
Sbjct: 438 REIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 159/339 (46%), Gaps = 56/339 (16%)

Query: 50  NIKQLKQIHTQMLRTG---LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           +++  + IH+ ++R+G   L +   S   L+  C  G  +S   A ++FD++P+ +L  W
Sbjct: 3   DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC--GDVAS---AYKVFDKMPEKDLVAW 57

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           N++I  ++ + +P ++  ++ ++  NS    P+ FT   ++ A A++    +G+ +H  +
Sbjct: 58  NSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 115

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           IK     +L  SN L+  YA CG +  A  +F  +  K+ VSW S+I G    GF ++AI
Sbjct: 116 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 175

Query: 226 ELYREME-MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           EL++ ME  E + P E+T V +L AC+    ++      E    F  ++    + P    
Sbjct: 176 ELFKYMESTEGLLPCEITFVGILYACSHCGMVK------EGFEYFRRMREEYKIEP---- 225

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
                      G M                         +D+  + G + KA E   ++ 
Sbjct: 226 ------RIEHFGCM-------------------------VDLLARAGQVKKAYEYIKSMP 254

Query: 345 SR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
            + +V +W T++    ++  G   L  F+R+Q  +++PN
Sbjct: 255 MQPNVVIWRTLLGACTVH--GDSDLAEFARIQILQLEPN 291


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 347/578 (60%), Gaps = 35/578 (6%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           +  +  ARE+FD++P  ++ +WN ++  Y+   + +++  +F     ++    + FT+  
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTA 260

Query: 145 VIKAAARLVQFRVGQAIHGM------VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           V+           G A +GM      V  +  E +    N+++  Y     +  A  +F 
Sbjct: 261 VVS----------GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
           M+  ++V SWN+M++G+ Q G  E+A  ++  M     + D V+  A+L+A ++      
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQ------ 360

Query: 259 GRWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
           G    E L +F E+ +  + VN     F  VLS CA + A++ G+Q+H ++ + G  + C
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRS--AFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 418

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  +L+ MY KCGN++ A   F  ++ RDV  W+TMIAG+A +G G+EAL++F  M+  
Sbjct: 419 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 478

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
             KP+ +T   VL ACSHSGLV++G  +F  M   +GV    +HYTCM+D+LGRAG L E
Sbjct: 479 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 538

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + ++ MP  P +++WGALLGA +IH N EL   A   + ELEPEN G  VLLSNIYA 
Sbjct: 539 AHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYAS 598

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +GKW +  ++R  M   G+KK PG S IEV  ++H F AG+  HP  ++IY+ L+++  R
Sbjct: 599 SGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMR 658

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYV     +L  VEEE+ +E  L  HSE+LA+AYG++++ P +PIR++KNLRVCGD
Sbjct: 659 MKKAGYVSATDMVLHDVEEEE-KEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGD 717

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   K IS +  R ILLRD  RFHHFRGG+CSC DYW
Sbjct: 718 CHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 152/328 (46%), Gaps = 44/328 (13%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A  +F  IP+P+ Y++NTL+ A + S+    +  +F ++        +  T+  +I 
Sbjct: 85  LPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR-----DSVTYNVMIS 139

Query: 148 AAARLVQFRVGQAIHGMVIKSSF------EDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +           A HG+V  +        E D    N ++  Y   G +  A  +F    
Sbjct: 140 S----------HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           + D +SWN+++SG+VQ G   +A EL+  M   +V    V+   ++S  A++ D+     
Sbjct: 190 EWDAISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMV---- 241

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EA  +F    +      D FT+ +V+S  AQ G ++   ++   M ++    N     
Sbjct: 242 --EARRLFDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWN 290

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +++  Y +   +D+A E+F+ +  R+V  W+TM+ G+A  G   EA  +F  M +     
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----K 346

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +AV++  +L A S  G  +E    F +M
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEM 374



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 144/338 (42%), Gaps = 61/338 (18%)

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
            E ++  SN  I  +   G +A A  +F  + ++   ++N+M++G+   G    A  L+R
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL----SIFHELQLSKNVN------ 279
            +     +PD  +   +L A A    L   R   + +    S+ + + +S + N      
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSL 149

Query: 280 ----------PDEFTFVSVLSACAQLGAMDIGVQI-HAKMKKQGIKLNCYLTTSLIDMYT 328
                      D  ++  +L+A  + G ++    + +++ +   I  N     +L+  Y 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWN-----ALMSGYV 204

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           + G + +A E+F  +  RDV  W+ M++G+A  G   EA  LF    +A    +  T+T 
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTA 260

Query: 389 VLCACSHSGLVDEGRMFFNQM------------------------EPVYGVVP--GVKHY 422
           V+   + +G+++E R  F+ M                        + ++ ++P   V  +
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             M+    +AG+L+EA    + MP     S W A+L A
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-WAAMLAA 357


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 365/635 (57%), Gaps = 22/635 (3%)

Query: 25  PTTLTVNNGHQHH---PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           P++     G QH       V  L+  C  +++  ++H   +R G+  D     +L    A
Sbjct: 19  PSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQR--A 76

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                 L+    +    P P    + + I A+SS    + +  +  +++      P   T
Sbjct: 77  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEML-GRGLIPTSHT 135

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
               + A   L    +G+A+H    K +   D +++ +L+  YA  GD   A  +F  + 
Sbjct: 136 LSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMP 192

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
              VV   +M++ + + G  + A EL+  M       D +   A++         + GR 
Sbjct: 193 DPHVVPVTAMLTCYAKMGALDDARELFDGMP----SKDFICWNAMIDGYT-----QHGR- 242

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLT 320
           PNEAL +F  + L   V+PDE   +  LSA AQLG  + G  +H+ +K  + ++LN  + 
Sbjct: 243 PNEALRLFRWM-LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVG 301

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T+LIDMY KCG+L+ A+ VF+++  +D+ VW+ MI G+AM+G  R+AL++FS+++   + 
Sbjct: 302 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P  +TF  +L ACSHSGLVDEG  FF  ME  Y +VP ++HY CMVD+LGRAGL++EA  
Sbjct: 362 PTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFH 421

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            ++ M I P   +W +LL AC++H+N+ L +    +L+     N G  +LLSNIYA  G 
Sbjct: 422 LVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGN 481

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           W+ V+ +R  M+ SG++KEPGCS+IEV  ++++F+AG+ SHP   EIY+ L+++   +K 
Sbjct: 482 WEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKE 541

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            G+VP    +L  ++E   +E+AL +HSE+LA+A+GLIS  P + I+IVKNLR C DCH 
Sbjct: 542 QGHVPQTELVLHDLDEV-TKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHA 600

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           V KLISK+  R+I+ RDR RFHHF  G+C+C DYW
Sbjct: 601 VLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 365/635 (57%), Gaps = 22/635 (3%)

Query: 25  PTTLTVNNGHQHH---PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           P++     G QH       V  L+  C  +++  ++H   +R G+  D     +L    A
Sbjct: 18  PSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQR--A 75

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                 L+    +    P P    + + I A+SS    + +  +  +++      P   T
Sbjct: 76  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEML-GRGLIPTSHT 134

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
               + A   L    +G+A+H    K +   D +++ +L+  YA  GD   A  +F  + 
Sbjct: 135 LSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMP 191

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
              VV   +M++ + + G  + A EL+  M       D +   A++         + GR 
Sbjct: 192 DPHVVPVTAMLTCYAKMGALDDARELFDGMP----SKDFICWNAMIDGYT-----QHGR- 241

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLT 320
           PNEAL +F  + L   V+PDE   +  LSA AQLG  + G  +H+ +K  + ++LN  + 
Sbjct: 242 PNEALRLFRWM-LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVG 300

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T+LIDMY KCG+L+ A+ VF+++  +D+ VW+ MI G+AM+G  R+AL++FS+++   + 
Sbjct: 301 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P  +TF  +L ACSHSGLVDEG  FF  ME  Y +VP ++HY CMVD+LGRAGL++EA  
Sbjct: 361 PTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFH 420

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            ++ M I P   +W +LL AC++H+N+ L +    +L+     N G  +LLSNIYA  G 
Sbjct: 421 LVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGN 480

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           W+ V+ +R  M+ SG++KEPGCS+IEV  ++++F+AG+ SHP   EIY+ L+++   +K 
Sbjct: 481 WEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKE 540

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            G+VP    +L  ++E   +E+AL +HSE+LA+A+GLIS  P + I+IVKNLR C DCH 
Sbjct: 541 QGHVPQTELVLHDLDEV-TKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHA 599

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           V KLISK+  R+I+ RDR RFHHF  G+C+C DYW
Sbjct: 600 VLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/627 (38%), Positives = 363/627 (57%), Gaps = 50/627 (7%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-L 88
           G++ +   + + +K C  ++  K    +H   L+     D Y    L     L T S  +
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLE---LYTKSGEI 256

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
             A++ F+++P+ +L  W+ +I  Y+ S +  ++  +F ++  +S   PN FTF  V++A
Sbjct: 257 AEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQA 316

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A LV   +G  IH  V+K   + ++F+SN+L+  YA CG++  +  +F    +K+ V+W
Sbjct: 317 CASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAW 376

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N++I G+VQ G  EKA+ L+  M                                     
Sbjct: 377 NTIIVGYVQLGDGEKALNLFSNM------------------------------------- 399

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                L  ++ P E T+ SVL A A L A++ G QIH+   K     +  +  SLIDMY 
Sbjct: 400 -----LGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYA 454

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG +D A   F  +  +D   W+ +I G++++G G EAL+LF  MQ++  KPN +TF  
Sbjct: 455 KCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVG 514

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VL ACS++GL+D+GR  F  M   YG+ P ++HYTCMV +LGR+G  DEAV+ I ++P  
Sbjct: 515 VLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQ 574

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P   VW ALLGAC IH+N++L +     +LE+EP++    VLLSN+YA   +WDNV+ +R
Sbjct: 575 PSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVR 634

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K+M+   +KKEPG S +E  G +H F  G++SHP  K I++ L+ +  + +  GYVP+ S
Sbjct: 635 KNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCS 694

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            +L L  E+D +E+ L +HSERLA+A+GLI +     IRI+KNLR+C DCH V KL+SK+
Sbjct: 695 VVL-LDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKI 753

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             REI++RD  RFHHFR G CSC DYW
Sbjct: 754 VQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 174/388 (44%), Gaps = 47/388 (12%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H  +L+ G   D ++ + L        F  LE A ++FD++P  N  ++ TL + +S
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYV--HFGFLEDASKLFDEMPLTNTVSFVTLAQGFS 80

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S +  Q     L  ++   Y  N+F F  ++K    +       ++H  V K   + D 
Sbjct: 81  RSHQ-FQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADA 139

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+  +LI  Y++CG++  A  VF  I  KD+VSW  M++ + +    E ++ L+ +M + 
Sbjct: 140 FVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM 199

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             +P+                                           FT  + L +C  
Sbjct: 200 GYRPNN------------------------------------------FTISAALKSCNG 217

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L A  +G  +H    K     + Y+  +L+++YTK G + +A + F  +   D+  WS M
Sbjct: 218 LEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLM 277

Query: 355 IAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           I+ +A     +EAL+LF RM Q + V PN  TF +VL AC+   L++ G    + +  V 
Sbjct: 278 ISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV- 336

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           G+   V     ++D+  + G ++ +V+ 
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKL 364



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 152/347 (43%), Gaps = 62/347 (17%)

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D+ + N +++ +V  GF E A +L+ EM + N      T+  V  A    R  +F     
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTN------TVSFVTLAQGFSRSHQF----- 85

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           +           +    ++F F ++L     +   D  + +HA + K G + + ++ T+L
Sbjct: 86  QRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTAL 145

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           ID Y+ CGN+D A +VF  +  +D+  W+ M+A +A   C  ++L LF +M+    +PN 
Sbjct: 146 IDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNN 205

Query: 384 VTFTNVLCAC-----------------------------------SHSGLVDEGRMFFNQ 408
            T +  L +C                                   + SG + E + FF +
Sbjct: 206 FTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEE 265

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP----IVPGASVWGALLGACKIH 464
           M P   ++P    ++ M+    ++    EA+E   +M     +VP    + ++L AC   
Sbjct: 266 M-PKDDLIP----WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSN----IYAKTGKWDNVSEL 507
             + L     S +L++  +++   V +SN    +YAK G+ +N  +L
Sbjct: 321 VLLNLGNQIHSCVLKVGLDSN---VFVSNALMDVYAKCGEIENSVKL 364


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/621 (38%), Positives = 358/621 (57%), Gaps = 54/621 (8%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           IK C ++  +   KQ H Q    G   D + +S L       T   LE AR++FD+IP+ 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIV--MYSTCGKLEDARKVFDEIPKR 140

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-----SPYFPNEFTFPFVIKAAARLVQFR 156
           ++ +W ++IR Y  +   + +  +F  L+ +        F +      VI A +R+    
Sbjct: 141 DIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKG 200

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD--LAMAYCVFVMIGKKDVVSWNSMISG 214
           + ++IH  VIK  F+  + + N+L+  YA  G+  +A+A  +F  I  KD VS+NS++S 
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G                                           NEA  +F  L  
Sbjct: 261 YAQSGM-----------------------------------------SNEAFEVFRRLVK 279

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +K V  +  T  +VL A +  GA+ IG  IH ++ + G++ +  + TS+IDMY KCG ++
Sbjct: 280 NKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVE 339

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A + F  +K+++V  W+ MIAG+ M+G   +AL+LF  M ++ V+PN +TF +VL ACS
Sbjct: 340 TARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS 399

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GL  EG  +FN M+  +GV PG++HY CMVD+LGRAG L +A + I++M + P + +W
Sbjct: 400 HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIW 459

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL AC+IH+NVELAE + + L EL+  N G  +LLS+IYA  G+W +V  +R  M+  
Sbjct: 460 SSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNR 519

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GL K PG S +E+NGE+H FL G+  HP  ++IY  L E+  +L   GYV N S +   V
Sbjct: 520 GLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDV 579

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +E  L +HSE+LAIA+G+++  P   + +VKNLRVC DCH V KLISK+ +RE +
Sbjct: 580 DEEE-KEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF+ G CSC DYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 43  SLIKQCKNI--KQLKQ-IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +  K L + IH+ +++ G        + L    A G    +  AR++FDQI 
Sbjct: 188 SVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  ++N+++  Y+ S    ++F +F +LV N     N  T   V+ A +     R+G+
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  VI+   EDD+ +  S+I  Y  CG +  A   F  +  K+V SW +MI+G+   G
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHG 367

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR-DLEFGRWPN 263
              KA+EL+  M    V+P+ +T V+VL+AC+     +E  RW N
Sbjct: 368 HAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 348/639 (54%), Gaps = 65/639 (10%)

Query: 23  PNPTTLTVN---NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT- 78
           PNP+ LT           PHP          ++  +Q+H + L+     +P+  + L T 
Sbjct: 66  PNPSHLTFPIALKSASRLPHP----------LRAGEQLHARSLKLPSHTNPHVLTSLLTL 115

Query: 79  --PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
              C L     L  A+ +FD++P P+  +W  LI AY  + +  ++  +      N    
Sbjct: 116 YARCGL-----LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG-MR 169

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT   V+ A AR+     G+ +     +      +F++ + +  Y  CG++A A  V
Sbjct: 170 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD V+W +M+ G+   G                                     
Sbjct: 230 FDKMRDKDAVAWGAMVGGYASNGH------------------------------------ 253

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                P EAL +F  +Q ++ V PD +     LSAC +LGA+D+G Q    +       N
Sbjct: 254 -----PREALDLFLAMQ-AEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+LIDMY KCG+  +A  VF  ++ +D+ VW+ MI G  M G  + A  L  +M++
Sbjct: 308 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 367

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + VK N  TF  +LC+C+H+GL+ +GR +F+ M  +Y + P ++HY C+VD+L RAGLL 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 427

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA + I+ MP+   A + GALLG CKIH N ELAE+  + L+ LEP N G  V+LSNIY+
Sbjct: 428 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 487

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             G+W++ ++LR  M+  G++K P CS +E  G++H+F  G+ SHPL  +IY KLDE+  
Sbjct: 488 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 547

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            +K+ GY P    ++  VE+E+ +E  L  HSE+LAIA+ L+   P + IR+ KNLRVC 
Sbjct: 548 EMKTMGYEPTTEVVMFDVEDEE-KEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCS 606

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHT  KLIS++ +REI++RD  RFH FR G+CSC DYW
Sbjct: 607 DCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/601 (39%), Positives = 344/601 (57%), Gaps = 48/601 (7%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           QIH   ++ GL  D    + L    A   F S++Y   +FD++P  ++ +W T+I  ++ 
Sbjct: 440 QIHAYAMKNGLDSDLQVGNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    ++  +F ++        +      ++ A + L      + IH  +I+     DL 
Sbjct: 498 NGSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLV 555

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + N ++  Y  CG++  A  +F +I  KDVVSW SMIS +V  G                
Sbjct: 556 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGL--------------- 600

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                                      NEAL +FH L     V PD  + VS+LSA A L
Sbjct: 601 --------------------------ANEALELFH-LMKETGVEPDSISLVSILSAAASL 633

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A+  G +IH  + ++G  L   L ++L+DMY +CG L+K+  VF+ ++++D+ +W++MI
Sbjct: 634 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMI 693

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
             + M+GCGR A+DLF RM++  + P+ + F  VL ACSHSGL++EGR F   M+  Y +
Sbjct: 694 NAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQL 753

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
            P  +HY C+VD+LGRA  L+EA +F++ M + P A VW ALLGAC+IH N EL E A  
Sbjct: 754 EPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQ 813

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
            LLE++PEN G  VL+SN+YA   +W +V E+R  M+ SGLKK PGCS IEV  ++H F+
Sbjct: 814 KLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFM 873

Query: 536 AGESSHPLCKEIYSKLDEIVARL-KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           A + SHP   EIYSKL +I  +L K  GYV     +L   +EE+ + Q L  HSERLAIA
Sbjct: 874 ARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE-KVQMLYGHSERLAIA 932

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YG+++      +RI KNLRVCGDCH   KLISK + RE+++RD  RFHHF+GG CSC D 
Sbjct: 933 YGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDV 992

Query: 655 W 655
           W
Sbjct: 993 W 993



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 51/376 (13%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           +P+  +++  +      V  L    K + + +Q+H  M+ +   F+    S        G
Sbjct: 107 SPSQFSLDEAYS----SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLV-FMYG 161

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-VYNSPYFPNEFTF 142
               L  A ++FD +P   ++TWN +I AY ++ EP+ S  ++ ++ V   P   +  TF
Sbjct: 162 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL--DACTF 219

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIG 201
           P ++KA   L   R G  +HG+ IK  +   +F++NS++  Y  C DL  A  +F  M  
Sbjct: 220 PCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 279

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           K+DVVSWNSMIS +   G   +A+ L+ EM+  ++ P+  T VA L AC           
Sbjct: 280 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC----------- 328

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                              ++ +F+              G+ IHA + K    +N ++  
Sbjct: 329 -------------------EDSSFIKQ------------GMFIHATVLKSSYYINVFVAN 357

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI MY + G + +A  +F+ +   D   W++M++GF   G   EAL  +  M++A  KP
Sbjct: 358 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 417

Query: 382 NAVTFTNVLCACSHSG 397
           + V   +++ A + SG
Sbjct: 418 DLVAVISIIAASARSG 433



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 46/305 (15%)

Query: 158 GQAIHG-MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           GQ +H  M+  ++  + +F+S  L+  Y  CG L  A  +F  +  K + +WN+MI  +V
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G    ++ELYREM +  +  D  T   +L AC   +D                     
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRR------------------- 233

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                   G ++H    K+G     ++  S++ MYTKC +L+ A
Sbjct: 234 -----------------------CGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 270

Query: 337 LEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            ++F  +  + DV  W++MI+ ++  G   EAL LF  MQ+A + PN  TF   L AC  
Sbjct: 271 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 330

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           S  + +G MF +           V     ++ M  R G + EA      M      S W 
Sbjct: 331 SSFIKQG-MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTIS-WN 388

Query: 456 ALLGA 460
           ++L  
Sbjct: 389 SMLSG 393



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLY 104
           K I  +K+IH+ ++R GL       S L     +    G   +++YA  MF+ I   ++ 
Sbjct: 534 KLISSVKEIHSYIIRKGL-------SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVV 586

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +W ++I  Y  +    ++  +F  L+  +   P+  +   ++ AAA L   + G+ IHG 
Sbjct: 587 SWTSMISCYVHNGLANEALELF-HLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGF 645

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           +I+  F  +  ++++L+  YA CG L  +  VF  I  KD+V W SMI+ +   G    A
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 705

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           I+L+R ME E++ PD +  VAVL AC+    +  GR   E++   ++L+
Sbjct: 706 IDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 754



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 263 NEALSIFHELQLSKNVNPDEFT----FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-C 317
           NEA     +L    N +P +F+    + SVL  C    A+  G Q+HA M       N  
Sbjct: 93  NEAFQSLTDL--FANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSV 150

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L+T L+ MY KCG L  A ++F  +  + +F W+ MI  +   G    +L+L+  M+ +
Sbjct: 151 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 210

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGR--MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            +  +A TF  +L AC   GL+ + R     + +    G V  V     +V M  +   L
Sbjct: 211 GIPLDACTFPCILKAC---GLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 267

Query: 436 DEAVEFIEKMPIVPGASVWGALLGA 460
           + A +  ++MP       W +++ A
Sbjct: 268 NGARQLFDRMPEKEDVVSWNSMISA 292


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/561 (39%), Positives = 329/561 (58%), Gaps = 52/561 (9%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMI----FLQLVYNSPYFPNEFTFPFVIKAAARLVQF-R 156
           + +  NTLIRA+++S  PI S  +    F  L+      PN+FTFPF++KA A L     
Sbjct: 87  DAFLANTLIRAHATS--PIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPD 144

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD--LAMAYCVFVMIGKKDVVSWNSMISG 214
           VG   H   +K  F  D ++SN+LIH Y+  G   L  A  VF  + K+  V+W++MI G
Sbjct: 145 VGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGG 204

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +V+GG    A++L+REM+   V+ DEVT++ VL+A      LE  RW             
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARW------------- 251

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                                        +   ++++GI  +  L  +LID   KCG++D
Sbjct: 252 -----------------------------VRRFVEREGIGKSVTLCNALIDTLAKCGDVD 282

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A+ VF  ++ R V  W+++I   AM G G+EA+ +F  M+ A V P+ V F  VL ACS
Sbjct: 283 GAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACS 342

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+G+VDEG  +F+ M+  YG+ P ++HY CMVDM GRAG+++ A+EF+  MPI P   +W
Sbjct: 343 HAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIW 402

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +L+ AC+ H  +EL E     LL   P +    ++LSN++A T +W   SE+R+ M   
Sbjct: 403 RSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKR 462

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+KK PGCS +E++GE+H+F+AG+ SHP  K+IY  ++E+   L+  G++   S +L  +
Sbjct: 463 GIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDL 522

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EED +E AL  HSE+LAIA+ L+   P   +R+VKNLRVC DCH   K IS++Y REI+
Sbjct: 523 DEED-KEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIV 581

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RDR RFH F+ G+CSC D+W
Sbjct: 582 VRDRSRFHRFKDGSCSCKDFW 602


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 347/578 (60%), Gaps = 35/578 (6%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           +  +  ARE+FD++P  ++ +WN ++  Y+   + +++  +F     ++    + FT+  
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTA 260

Query: 145 VIKAAARLVQFRVGQAIHGM------VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           V+           G A +GM      V  +  E +    N+++  Y     +  A  +F 
Sbjct: 261 VVS----------GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
           M+  ++V SWN+M++G+ Q G  E+A  ++  M     + D V+  A+L+A ++      
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQ------ 360

Query: 259 GRWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
           G    E L +F E+ +  + VN     F  VLS CA + A++ G+Q+H ++ + G  + C
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRS--AFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 418

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  +L+ MY KCGN++ A   F  ++ RDV  W+TMIAG+A +G G+EAL++F  M+  
Sbjct: 419 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 478

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
             KP+ +T   VL ACSHSGLV++G  +F  M   +GV    +HYTCM+D+LGRAG L E
Sbjct: 479 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 538

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + ++ MP  P +++WGALLGA +IH N EL   A   + ELEPEN G  VLLSNIYA 
Sbjct: 539 AHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYAS 598

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +GKW +  ++R  M   G+KK PG S IEV  ++H F AG+  HP  ++IY+ L+++  R
Sbjct: 599 SGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMR 658

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYV     +L  VEEE+ +E  L  HSE+LA+AYG++++ P +PIR++KNLRVCGD
Sbjct: 659 MKKAGYVSATDMVLHDVEEEE-KEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGD 717

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   K IS +  R ILLRD  RFHHFRGG+CSC DYW
Sbjct: 718 CHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 153/328 (46%), Gaps = 44/328 (13%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A  +F  IP+P+ Y++NTL+ A + S+    +  +F ++        +  T+  +I 
Sbjct: 85  LPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR-----DSVTYNVMIS 139

Query: 148 AAARLVQFRVGQAIHGMVIKSSF------EDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +           A HG+V  +        E D    N ++  Y   G +  A  +F    
Sbjct: 140 S----------HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           + DV+SWN+++SG+VQ G   +A EL+  M   +V    V+   ++S  A++ D+     
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMV---- 241

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EA  +F    +      D FT+ +V+S  AQ G ++   ++   M ++    N     
Sbjct: 242 --EARRLFDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWN 290

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +++  Y +   +D+A E+F+ +  R+V  W+TM+ G+A  G   EA  +F  M +     
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----K 346

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +AV++  +L A S  G  +E    F +M
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEM 374



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 31/292 (10%)

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
            E ++  SN  I  +   G +A A  +F  + ++   ++N+M++G+   G    A  L+R
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
            +     +PD  +   +L A A    L       +A  +F E+ +      D  T+  ++
Sbjct: 94  AIP----RPDNYSYNTLLHALAVSSSLA------DARGLFDEMPVR-----DSVTYNVMI 138

Query: 290 SACAQLGAMDIGVQ-IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           S+ A  G + +         +K  +  N  L       Y + G +++A  +F++    DV
Sbjct: 139 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA-----YVRNGRVEEARGLFNSRTEWDV 193

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+ +++G+  +G   EA +LF RM    V    V++  ++   +  G + E R  F+ 
Sbjct: 194 ISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLFDA 249

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             PV  V      +T +V    + G+L+EA    + MP     S W A++ A
Sbjct: 250 -APVRDVFT----WTAVVSGYAQNGMLEEARRVFDAMPERNAVS-WNAMVAA 295


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/673 (35%), Positives = 367/673 (54%), Gaps = 65/673 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +LI     +  LKQIH  ++   L  D +  + L        F   +Y+  +F     PN
Sbjct: 18  TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLF--FRQTKYSYLLFSHTQFPN 75

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ +N+LI  + ++    ++  +FL +  +  Y  + FTFP V+KA  R    ++G  +H
Sbjct: 76  IFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYL-HGFTFPLVLKACTRASSRKLGIDLH 134

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            +V+K  F  D+    SL+  Y+  G L  A+ +F  I  + VV+W ++ SG+   G   
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHR 194

Query: 223 KAIELYREMEMENVKPD--------------------------------------EVTMV 244
           +AI+L+++M    VKPD                                        T+V
Sbjct: 195 EAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLV 254

Query: 245 AVLSACAK------------KRDL----------EFGRWPNEALSIFHELQLSKNVNPDE 282
            + + C K            ++D+              +P E + +F ++ L +N+ PD+
Sbjct: 255 NLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQM-LQENLKPDQ 313

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           F+ V  LS+CA LGA+D+G    + + +     N ++  +LIDMY KCG + +  EVF  
Sbjct: 314 FSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +K +D+ + +  I+G A  G  + +  +F + ++  + P+  TF  +LC C H+GL+ +G
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
             FFN +  VY +   V+HY CMVD+ GRAG+LD+A   I  MP+ P A VWGALL  C+
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           + ++ +LAE     L+ LEP N G  V LSNIY+  G+WD  +E+R  M   G+KK PG 
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGY 553

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IE+ G++H+FLA + SHPL  +IY+KL+++   ++  G+VP    +   VEEE+ +E+
Sbjct: 554 SWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEE-KER 612

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSE+LA+A GLIS +  Q IR+VKNLRVCGDCH V KLISK+  REI++RD  RFH
Sbjct: 613 VLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672

Query: 643 HFRGGNCSCMDYW 655
            F  G+CSC DYW
Sbjct: 673 CFTNGSCSCNDYW 685


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/636 (37%), Positives = 374/636 (58%), Gaps = 23/636 (3%)

Query: 25  PTTLTVNNGHQHH----PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           P+    ++   HH         SL+  C   ++  ++H  ++R GL  D   A +L    
Sbjct: 7   PSVAPASDSGGHHGALTADRAASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQR-- 64

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A      L+++  +  +   P    + + I A+SS    +    +   ++ +    P   
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDML-SEGLLPTAH 123

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T    + A   L    +G+A+H    K +   D +++ +L+  YA  GD A A  +F  +
Sbjct: 124 TLSASLPACRGL---SLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEM 180

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
               VVS  +M++ +   G  + A  L+  +     + D +   A++         + G+
Sbjct: 181 PDPHVVSVTAMLTCYANMGALDDARRLFDGLP----RKDFICWNAMIDGYT-----QHGK 231

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYL 319
            PNEAL +F  + L  +  PDE T V VLSA AQLG ++ G  +H+ +K  + ++LN  +
Sbjct: 232 -PNEALQLFRRM-LRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRV 289

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            T+L+DMY KCG+L+ A+ VFH + ++D+ VW+ MI G+AM+G  R+AL++F ++++  +
Sbjct: 290 ATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGL 349

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            P  +TF  +L ACSHSGLV+EGR FF  ME  YG+ P ++HY CMVD+LGRAGL++EA 
Sbjct: 350 WPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAF 409

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
             ++ + I P A +W +LL AC++H+N+ L +     L+     N G  +LLSNIYA  G
Sbjct: 410 HLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVG 469

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           KW+ V+ +R  M+ SG++KEPGCS+IE++ ++++F+AG+ SHP   EIY+ LD++ A +K
Sbjct: 470 KWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVK 529

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             G+VP    +L  ++E   +E+AL +HSE+LA+A+GLIS  P   I+IVKNLR C DCH
Sbjct: 530 EHGHVPQTELVLHDLDEA-TKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCH 588

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            V KLISK+ +R+I+ RDR RFHHF  G+C+C DYW
Sbjct: 589 AVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 370/623 (59%), Gaps = 26/623 (4%)

Query: 43  SLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +   +  K IH ++L  G   D Y  + L        F+ L+ AR++F+++P
Sbjct: 120 SVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALID--MYCRFNDLDKARKVFEEMP 177

Query: 100 QPNLYTWNTLIRAYSSSA---EPI----QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
             ++ +WN+LI  Y+++    E +    QS  +F+++V  + + P+  T   +++A   L
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMV--NQFKPDLLTITSILQACGHL 235

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ +H  +I S +E D   SN LI+ YA CG+L  +  VF  +  KD VSWNSMI
Sbjct: 236 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 295

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           + ++Q G    +++++  M+  ++    +T   ++++C    D   G      L +   +
Sbjct: 296 NVYIQNGKMGDSLKVFENMKARDI----ITWNTIIASCVHSEDCNLG------LRMISRM 345

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           + ++ V PD  T +S+L  C+ L A   G +IH  + K G++ +  +   LI+MY+KCG+
Sbjct: 346 R-TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGS 404

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L  + +VF  +K++DV  W+ +I+   MYG G++A+  F  M+ A + P+ V F  ++ A
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFA 464

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSHSGLV+EG  +F++M+  Y + P ++HY C+VD+L R+ LLD+A +FI  MP+ P +S
Sbjct: 465 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSS 524

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +WGALL AC++  + E+AE     ++EL P++ G  VL+SNIYA  GKWD V  +RK ++
Sbjct: 525 IWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIK 584

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             GLKK+PGCS +E+  +++ F  G       +E+   L  +   +   GY+ N   +L 
Sbjct: 585 ARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLH 644

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            + +ED +   L  HSERLAIA+GL++ +P  P++++KNLRVC DCHTV K ISK+  RE
Sbjct: 645 DI-DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRE 703

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           +L+RD  RFH F+ G CSC DYW
Sbjct: 704 LLVRDANRFHVFKDGACSCGDYW 726



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 213/447 (47%), Gaps = 37/447 (8%)

Query: 34  HQHHPHPVFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-----LGT 84
           H+     +FS I +         QL ++H+ ++  GL      ++KL    A       +
Sbjct: 8   HECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 67

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           FS    A       P  N+Y WN++IRA + +    ++  ++ +        P+ +TFP 
Sbjct: 68  FSVFRLAS------PSNNVYLWNSIIRALTHNGLFSEALSLYSE-TQRIRLQPDTYTFPS 120

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           VI A A L+ F + ++IH  V+   F  DL+I N+LI  Y    DL  A  VF  +  +D
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 205 VVSWNSMISGFVQGGFFEKAIELYRE-----MEMEN-VKPDEVTMVAVLSACAKKRDLEF 258
           VVSWNS+ISG+   G++ +A+E+Y +     MEM N  KPD +T+ ++L AC    DLEF
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEF 240

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNC 317
           G++        H+  ++     D      +++  A+ G +    ++ + MK K  +  N 
Sbjct: 241 GKY-------VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN- 292

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
               S+I++Y + G +  +L+VF  +K+RD+  W+T+IA           L + SRM+  
Sbjct: 293 ----SMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 348

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            V P+  T  ++L  CS      +G+     +  + G+   V     +++M  + G L  
Sbjct: 349 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDVPVGNVLIEMYSKCGSLRN 407

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIH 464
           + +  + M        W AL+ AC ++
Sbjct: 408 SFQVFKLMK-TKDVVTWTALISACGMY 433


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 347/578 (60%), Gaps = 35/578 (6%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           +  +  ARE+FD++P  ++ +WN ++  Y+   + +++  +F     ++    + FT+  
Sbjct: 81  WGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTA 135

Query: 145 VIKAAARLVQFRVGQAIHGM------VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           V+           G A +GM      V  +  E +    N+++  Y     +  A  +F 
Sbjct: 136 VVS----------GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 185

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
           M+  ++V SWN+M++G+ Q G  E+A  ++  M     + D V+  A+L+A ++      
Sbjct: 186 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAVSWAAMLAAYSQ------ 235

Query: 259 GRWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
           G    E L +F E+ +  + VN     F  VLS CA + A++ G+Q+H ++ + G  + C
Sbjct: 236 GGCSEETLQLFIEMGRCGEWVNRS--AFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 293

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++  +L+ MY KCGN++ A   F  ++ RDV  W+TMIAG+A +G G+EAL++F  M+  
Sbjct: 294 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 353

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
             KP+ +T   VL ACSHSGLV++G  +F  M   +GV    +HYTCM+D+LGRAG L E
Sbjct: 354 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 413

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A + ++ MP  P +++WGALLGA +IH N EL   A   + ELEPEN G  VLLSNIYA 
Sbjct: 414 AHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYAS 473

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           +GKW +  ++R  M   G+KK PG S IEV  ++H F AG+  HP  ++IY+ L+++  R
Sbjct: 474 SGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMR 533

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYV     +L  VEEE+ +E  L  HSE+LA+AYG++++ P +PIR++KNLRVCGD
Sbjct: 534 MKKAGYVSATDMVLHDVEEEE-KEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGD 592

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   K IS +  R ILLRD  RFHHFRGG+CSC DYW
Sbjct: 593 CHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 23/239 (9%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E D    N ++  Y   G +  A  +F    + DV+SWN+++SG+VQ G   +A EL+  
Sbjct: 34  EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 93

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M   +V    V+   ++S  A++ D+       EA  +F    +      D FT+ +V+S
Sbjct: 94  MPGRDV----VSWNIMVSGYARRGDMV------EARRLFDAAPVR-----DVFTWTAVVS 138

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
             AQ G ++   ++   M ++    N     +++  Y +   +D+A E+F+ +  R+V  
Sbjct: 139 GYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 194

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           W+TM+ G+A  G   EA  +F  M +     +AV++  +L A S  G  +E    F +M
Sbjct: 195 WNTMLTGYAQAGMLEEAKAVFDTMPQ----KDAVSWAAMLAAYSQGGCSEETLQLFIEM 249



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 60/288 (20%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D    N +I  +A  G +++A   F +  +KD VSWN M++ +V+ G  E+A  L+    
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---- 60

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                                     +     D  ++ +++S  
Sbjct: 61  ------------------------------------------NSRTEWDVISWNALMSGY 78

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
            Q G M    ++  +M  + +         ++  Y + G++ +A  +F     RDVF W+
Sbjct: 79  VQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT 134

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +++G+A  G   EA  +F  M E     NAV++  ++ A     ++DE +  FN M P 
Sbjct: 135 AVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELFNMM-PC 189

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             V      +  M+    +AG+L+EA    + MP     S W A+L A
Sbjct: 190 RNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-WAAMLAA 232


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/619 (38%), Positives = 356/619 (57%), Gaps = 55/619 (8%)

Query: 43  SLIKQCKN--IKQL-KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S +K C    +++L +Q+H+ +++  +  D +    L   ++ C     +S++ AR +F 
Sbjct: 217 SALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKC-----NSMDDARLVFK 271

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P+ ++  WN +I  +S + E  ++  +F  L++      N+ T   V+K+ A L    
Sbjct: 272 LMPERDMIAWNAVISGHSQNEEDEEAASLF-PLMHTEGIGFNQTTLSTVLKSIAALQANY 330

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + + IH + +KS FE D ++ NSLI  Y  CG +  A  VF      D+V + S+++ + 
Sbjct: 331 MCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYA 390

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL ++ E+Q  +
Sbjct: 391 QDGQGE-----------------------------------------EALRLYLEMQ-DR 408

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + PD F   S+L+ACA L A + G Q+H  + K G   + +   SL++MY KCG+++ A
Sbjct: 409 GIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDA 468

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              F  +  R +  WS MI G A +G G+EAL LF +M +  V PN +T  +VLCAC+H+
Sbjct: 469 SCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHA 528

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV E + +FN M+ ++G+ P  +HY CM+D+LGRAG L+ A+E + KMP    A VWGA
Sbjct: 529 GLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGA 588

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA +IH+N++L E A   LL LEPE  G  VLL+NIYA  G WD V+ +R+ M+   +
Sbjct: 589 LLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKV 648

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPG S +EV  +++ F+ G+ SH    EIY+KLDE+   LK  GYVP     L  VE 
Sbjct: 649 KKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVER 708

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +EQ L  HSE+LA+A+GLI+  P  PIR+ KNLR+C DCHTV K ISK+ +REI++R
Sbjct: 709 SE-KEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVR 767

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHFR G+CSC +YW
Sbjct: 768 DTNRFHHFREGSCSCGEYW 786



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 183/423 (43%), Gaps = 77/423 (18%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++K C   K L   KQ+H  ++ TG   D + A+ L   +  C  G F     AR +FD
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKC--GGFGD---ARSLFD 69

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            IP  ++ +WN L   Y  S    ++  +F  +V  S   PNEF+   +I     L    
Sbjct: 70  AIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVL-SGIRPNEFSLSSMINVCTGLEDSV 128

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG +IK  ++ D F +N+L+  YA  G L  A  VF  I K D+VSWN++I+G V
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
              +  +A+EL REM    + P+  T+ + L ACA     E GR                
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGR---------------- 232

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                     Q+H+ + K  +  + +L   LIDMY+KC ++D A
Sbjct: 233 --------------------------QLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDA 266

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL------ 390
             VF  +  RD+  W+ +I+G +      EA  LF  M    +  N  T + VL      
Sbjct: 267 RLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAAL 326

Query: 391 -----CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                C   H+  +  G  F N +               ++D  G+ G +++A    E+ 
Sbjct: 327 QANYMCRQIHALSLKSGFEFDNYV------------VNSLIDTYGKCGHVEDATRVFEES 374

Query: 446 PIV 448
           PIV
Sbjct: 375 PIV 377


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 354/608 (58%), Gaps = 54/608 (8%)

Query: 55  KQIHTQMLRTGLF-FDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +Q+H   LR+GLF  D Y AS L   +  C    F  L+ AR  FD+IP PN      + 
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMYHHC----FRPLD-ARRAFDEIPTPNPVIVTAMA 162

Query: 111 RAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
                +     +  IF  +V + S    +E      + A+AR+    +   IH +V K  
Sbjct: 163 SGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIG 222

Query: 170 FEDDLFISNSLIHFYAICG--DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
            +    ++N++I  YA  G  DL  A  +F M+  +DVVSWN+MI+ + Q G   +A+ L
Sbjct: 223 LDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGL 281

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           Y +M                                        L +  +V  +  T  +
Sbjct: 282 YSKM----------------------------------------LIVGGDVRCNAVTLSA 301

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL ACA  GA+  G +IH ++ + G++ N Y+ TS++DMY+KCG ++ A + F  +K ++
Sbjct: 302 VLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKN 361

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  WS MIAG+ M+G G+EAL +F+ M+++ +KPN +TF  VL ACSH+GL+ EGR ++N
Sbjct: 362 ILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYN 421

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M+  +G+ PGV+HY CMVD+LGRAG LDEA   I++M + P A++WGALL AC+I++NV
Sbjct: 422 TMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNV 481

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           ELA+     L EL+  N G  VLLSNIYA+ G W  V  +R  ++  G++K PG SS+E+
Sbjct: 482 ELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVEL 541

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G+ H F  G+ SHP  KEIY+ L++++ R+   GYVPN   +L  ++ E+ +E  L +H
Sbjct: 542 KGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEE-RESMLRIH 600

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LA+A+ L++      I ++KNLRVC DCH   K+I+KL  REI++RD  RFHHF+ G
Sbjct: 601 SEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDG 660

Query: 648 NCSCMDYW 655
            CSC DYW
Sbjct: 661 LCSCGDYW 668



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 167/381 (43%), Gaps = 54/381 (14%)

Query: 92  REMFDQIPQPNL-YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           R +F +   P+   +W+T +    SS +P+ +  +F   +  +         P  ++AAA
Sbjct: 41  RALFLRAVDPSRPSSWSTAVADLLSSGDPVAALAVFAAALRAN-PAALRPALPPALRAAA 99

Query: 151 RLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
                  G+ +H + ++S  F  D + +++L+H Y  C     A   F  I   + V   
Sbjct: 100 AATSLSAGRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVT 159

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +M SG ++       + ++R            +MVA  SA                    
Sbjct: 160 AMASGCMRNNLVYTTLSIFR------------SMVASGSAGVV----------------- 190

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                      DE   +  LSA A++    I   IHA + K G+     +  ++ID Y K
Sbjct: 191 -----------DEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAK 239

Query: 330 CG--NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM--QEAKVKPNAVT 385
            G  +L  A ++F  +  RDV  W+TMIA +A  G   EAL L+S+M      V+ NAVT
Sbjct: 240 GGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVT 298

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            + VL AC+H+G +  G+   NQ+  + G+   V   T +VDM  + G ++ A +  +K 
Sbjct: 299 LSAVLLACAHAGAIQTGKRIHNQVVRM-GLEDNVYVGTSVVDMYSKCGKVEMAWKAFQK- 356

Query: 446 PIVPGASV--WGALLGACKIH 464
             + G ++  W A++    +H
Sbjct: 357 --IKGKNILSWSAMIAGYGMH 375


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 366/679 (53%), Gaps = 74/679 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFD 96
           +++K C N   L++   +H   LR+G   D +   S   +++ C      ++  A ++F 
Sbjct: 56  TVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCG-----TVYDALKVFT 110

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +I  P++  W+ +I          ++  +F  L+      PN+FT   ++  A  +   R
Sbjct: 111 KIRNPDVVAWSAMITGLDQQGHGQEAAELF-HLMRRKGARPNQFTLSSLVSTATNMGDLR 169

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            GQ+IHG + K  FE D  +SN LI  Y     +     VF  +   D+VSWN+++SGF 
Sbjct: 170 YGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFY 229

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC-------------------------- 250
                 +   ++ +M +E  KP+  T ++VL +C                          
Sbjct: 230 DSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF 289

Query: 251 ---------AKKRDLE-----FGRWPN--------------------EALSIFHELQLSK 276
                    AK R LE     F R  N                    +A+  F ++Q  +
Sbjct: 290 VGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQ-RE 348

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            + P+E+T  S LS C+ +  ++ G Q+HA   K G   + ++ ++L+D+Y KCG ++ A
Sbjct: 349 GIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA 408

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  + SRD+  W+T+I+G++ +G G +AL+ F  M    + P+  TF  VL ACS  
Sbjct: 409 EAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFM 468

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+  F+ M  +YG+ P ++HY CMVD+LGRAG  +E   FIE+M + P + +W  
Sbjct: 469 GLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWET 528

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           +LGACK+H NV+  E A   L E+EP    + +LLSNI+A  G+WD+V  +R  M   G+
Sbjct: 529 VLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGI 588

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPGCS +EV+G++H FL+ + SHP  +EIY+KLD++   L S GYVP    +L  V  
Sbjct: 589 KKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSN 648

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ++  E  L  HSERLA+++ L+S    +PIRI KNLR+C DCH   KLIS + N+EI++R
Sbjct: 649 KEKMEH-LYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVR 707

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G CSC D W
Sbjct: 708 DIRRFHHFKRGTCSCQDRW 726



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 76/449 (16%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E A  +F  +P+ N  +WN L+  Y+   +  +   +F ++      F ++FT   V+K
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKF-SKFTLSTVLK 59

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             A     R G+ +H + ++S  E D F+  SL+  Y+ CG +  A  VF  I   DVV+
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------- 260
           W++MI+G  Q G  ++A EL+  M  +  +P++ T+ +++S      DL +G+       
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 261 -----------------------------------------WPNEALSIFHELQ------ 273
                                                    W N  LS F++ Q      
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSW-NALLSGFYDSQTCGRGP 238

Query: 274 ------LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                 L +   P+ FTF+SVL +C+ L   + G Q+HA + K     + ++ T+L+DMY
Sbjct: 239 RIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMY 298

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            K   L+ A   F  + +RD+F W+ +I+G+A      +A+  F +MQ   +KPN  T  
Sbjct: 299 AKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLA 358

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY------TCMVDMLGRAGLLDEAVEF 441
           + L  CSH   ++ GR        ++ V     H+      + +VD+ G+ G ++ A E 
Sbjct: 359 SCLSGCSHMATLENGR-------QLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA-EA 410

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELA 470
           I K  I      W  ++     H   E A
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKA 439


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 360/650 (55%), Gaps = 59/650 (9%)

Query: 15  PVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS 74
           P++S P  P  +        QH       L+        L Q    +L++GL  +    +
Sbjct: 3   PLVSSPSAPRLSPSAARAAEQH----CLRLLAASSTPTSLLQSVAFLLKSGLHANSLVLT 58

Query: 75  KLFTPCALGTFSSLE--YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI----FLQ 128
           +LF   A    + L+   A  +   +P  + +  NTLIRA+++S  PI S  +    F  
Sbjct: 59  RLFAASASAAPALLDPLVAALLRPSVPL-DAFLANTLIRAHATS--PIHSLRLRAAAFFP 115

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
           L+      PN+FTFPF++KA A L     VG   H   +K  F  D ++SN+LIH Y+  
Sbjct: 116 LMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCF 175

Query: 188 GD--LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
           G   L  A  VF  + K+  V+W++MI G+V+GG    A+EL                  
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVEL------------------ 217

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
                                  F E+Q +  V  DE T + VL+A   LGA+++   + 
Sbjct: 218 -----------------------FREMQ-ANGVQADEVTVIGVLAAATDLGALELARWVR 253

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
             ++++GI  +  L  +LID   KCG++D A+ VF  ++ R V  W+++I   AM G G+
Sbjct: 254 RFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGK 313

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           EA+ +F  M+ A V P+ V F  VL ACSH+G+VDEG  +F+ M+  YG+ P ++HY CM
Sbjct: 314 EAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCM 373

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
           VDM GRAG+++ A+EF+  MPI P   +W +L+ AC+ H  +EL E     LL   P + 
Sbjct: 374 VDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHE 433

Query: 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCK 545
              ++LSN++A T +W   SE+R+ M   G+KK PGCS +E++GE+H+F+AG+ SHP  K
Sbjct: 434 ANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYK 493

Query: 546 EIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP 605
           +IY  ++E+   L+  G++   S +L  ++EED +E AL  HSE+LAIA+ L+   P   
Sbjct: 494 DIYRMVEEMARELRRVGHIAATSEVLLDLDEED-KEGALQWHSEKLAIAFALLRTPPGTQ 552

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +R+VKNLRVC DCH   K IS++Y REI++RDR RFH F+ G+CSC D+W
Sbjct: 553 VRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/554 (38%), Positives = 340/554 (61%), Gaps = 45/554 (8%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           ++ +W +LI  Y+ +  P ++  + L  +    + PN FTF  ++KAA       +G+ I
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGL-LLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 63

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H + +K  + DD+++ ++L+  YA CG + MA  VF  +  K+ VSWN++I+     GF 
Sbjct: 64  HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA-----GF- 117

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
                                        A+K D E        L +F E+Q        
Sbjct: 118 -----------------------------ARKGDGE------TTLLMFAEMQ-RNGFEAT 141

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
            FT+ SV SA A +GA++ G  +HA M K G +L+ ++  +++DMY K G++  A +VF 
Sbjct: 142 HFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFD 201

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            V  +D+  W++M+  FA YG GREA+  F  M++  V  N +TF ++L ACSH GLV E
Sbjct: 202 HVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKE 261

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ +F+ M+  + + P + HY  +VD+LGRAGLL++A+ FI KMP+ P A+VWGALLG+C
Sbjct: 262 GKQYFDMMKE-HNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSC 320

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H+N ++ ++A  H+ EL+P++ G  VLL NIYA TG+WD  + +RK M+ +G+KKEP 
Sbjct: 321 RMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPA 380

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
           CS +E+   +H F+A + +HP  +EIY K +EI  +++  GYVPN  ++L  V+E++ Q 
Sbjct: 381 CSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQA 440

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           + L  HSE++A+A+ LI++     IRI+KN+R+CGDCH+  + ISK++ REI++RD  RF
Sbjct: 441 K-LQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRF 499

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G+CSC DYW
Sbjct: 500 HHFSSGSCSCGDYW 513



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +QIH   ++     D Y  S L    A      ++ A  +FDQ+   N  +WN LI  ++
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYA--RCGRMDMAIAVFDQLESKNGVSWNALIAGFA 118

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
              +   + ++F ++  N  +    FT+  V  A A +     G+ +H  +IKS      
Sbjct: 119 RKGDGETTLLMFAEMQRNG-FEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 177

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ N+++  YA  G +  A  VF  + KKD+V+WNSM++ F Q G   +A+  + EM   
Sbjct: 178 FVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKC 237

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
            V  +++T +++L+AC+    ++ G+        + ++    N+ P+   +V+V+    +
Sbjct: 238 GVHLNQITFLSILTACSHGGLVKEGK-------QYFDMMKEHNLEPEIDHYVTVVDLLGR 290

Query: 295 LGAMD 299
            G ++
Sbjct: 291 AGLLN 295



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           + +RD+  W+++IAG+A      EAL L   M   + KPN  TF ++L A   S     G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
               + +   Y     V   + ++DM  R G +D A+   +++    G S W AL+  
Sbjct: 61  EQ-IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIAG 116



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 47/275 (17%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           VFS I     ++Q K +H  M+++G     +  + +    A     S+  AR++FD + +
Sbjct: 148 VFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKS--GSMIDARKVFDHVDK 205

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            +L TWN+++ A++      ++   F ++     +  N+ TF  ++ A +     + G+ 
Sbjct: 206 KDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL-NQITFLSILTACSHGGLVKEGKQ 264

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
              M+ + + E +       I  Y    DL         +G+                G 
Sbjct: 265 YFDMMKEHNLEPE-------IDHYVTVVDL---------LGR---------------AGL 293

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              A+    +M M   KP      A+L +C   ++ + G++  +     H  +L    +P
Sbjct: 294 LNDALVFIFKMPM---KPTAAVWGALLGSCRMHKNAKIGQFAAD-----HVFEL----DP 341

Query: 281 DEFT-FVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
           D+    V + +  A  G  D   ++   MK  G+K
Sbjct: 342 DDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVK 376


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 366/621 (58%), Gaps = 57/621 (9%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++ +C   + I++ +++HT M++T      Y  ++L   +  C       L  AR MFD
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKC-----DCLGDARGMFD 121

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++PQ N+ +W  +I AYS      ++  +F++++  S   PN FTF  ++ +    + F 
Sbjct: 122 EMPQRNVVSWTAMISAYSQRGFAFEALNLFVEML-RSDTEPNHFTFATILTSCYGSLGFE 180

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH + IK ++E  +F+ +SL+  YA  G +  A+ VF  + ++DVV+  ++ISG+ 
Sbjct: 181 TGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 240

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL +F +LQ+ +
Sbjct: 241 QMGLDE-----------------------------------------EALKLFRQLQI-E 258

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            +N +  T+ SVL+A + L A++ G Q+H+ + + G      L  SLIDMY+KCGN+  A
Sbjct: 259 GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 318

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH 395
             +F ++  R    W+ M+ G++ +G  RE L+LF  M+E  KVKP+++T+  VL  CSH
Sbjct: 319 RRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSH 378

Query: 396 SGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             L D G  +F+N +    G+ P + HY C+VD+LGRAG ++EA +FI+KMP VP A++W
Sbjct: 379 GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIW 438

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LLG+C++H +VE+       LLELEPEN G  V+LSN+YA  GKW+++  +R  M+  
Sbjct: 439 GSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 498

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            + KEPG S +E++  +H F A + +HP  +E+ +K+ E+  + K  GYVP+ S +L  V
Sbjct: 499 AVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDV 558

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE  +E+ L  HSE+LA+A+GLI+      IR++KNLR+C DCH+ AK +S+LY R ++
Sbjct: 559 DEEQ-KEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVI 617

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD+ RFH+  GG CSC DYW
Sbjct: 618 LRDKNRFHNIVGGVCSCGDYW 638


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 349/628 (55%), Gaps = 59/628 (9%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  +E AR++FD++P+ +   WNT+I  Y  +   ++S  +F  L+  S    +  T   
Sbjct: 167 FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLD 226

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++ A A L + R+G  IH +  K+      ++    I  Y+ CG + MA  +F    + D
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPD 286

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV-------------------- 244
           +V++N+MI G+   G  E ++ L++E+ +   K    T+V                    
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSL 346

Query: 245 ------------AVLSACAKKRDLEFGR-------------W------------PNEALS 267
                       A+ +  +K  ++E  R             W              +A+S
Sbjct: 347 KSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+Q S+  +P+  T   +LSACAQLGA+ +G  +H  ++    + + Y++T+LI MY
Sbjct: 407 LFREMQNSE-FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++ +A  +F  +  ++   W+TMI+G+ ++G G+EAL +FS M  + + P  VTF 
Sbjct: 466 AKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFL 525

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSH+GLV EG   FN M   YG  P VKHY C+VD+LGRAG L  A++FIE MPI
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPI 585

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            PG SVW  LLGAC+IH++  LA      L EL+P+N G  VLLSNI++    +   + +
Sbjct: 586 QPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+  +   L K PG + IE+    H F +G+ SHP  K I+ KL+++  +++  GY P  
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPET 705

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
              L  VEEE+ +E  + +HSERLAIA+GLI+ EP   IRI+KNLRVC DCHT  KLISK
Sbjct: 706 ELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISK 764

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R I++RD  RFHHF+ G CSC DYW
Sbjct: 765 ITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/485 (21%), Positives = 206/485 (42%), Gaps = 71/485 (14%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
             L K+  +I  L Q H Q++  G   D    +KL     L    ++ YAR++F  + +P
Sbjct: 24  LDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQ--RLSDLGAIYYARDIFLSVQRP 81

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +++ +N L+R +S +  P  S  +F  L  ++   PN  T+ F I AA+     R G  I
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVI 141

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG  I    + +L + ++++  Y     +  A  VF  + +KD + WN+MISG+ +   +
Sbjct: 142 HGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 222 EKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNE---------------- 264
            ++I+++R++  E+  + D  T++ +L A A+ ++L  G   +                 
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG 261

Query: 265 -------------ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                        A ++F E +      PD   + +++      G  ++ + +  ++   
Sbjct: 262 FISLYSKCGKIKMASTLFREFR-----RPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 312 GIKL--------------------------------NCYLTTSLIDMYTKCGNLDKALEV 339
           G KL                                +  ++T+L  +Y+K   ++ A ++
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F     + +  W+ MI+G+   G   +A+ LF  MQ ++  PN VT T +L AC+  G +
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
             G+   + +         +   T ++ M  + G + EA    + MP       W  ++ 
Sbjct: 437 SLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMIS 494

Query: 460 ACKIH 464
              +H
Sbjct: 495 GYGLH 499



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYA 91
           +G +     + SL+    ++  +  IH   L++  F    S S   T       + +E A
Sbjct: 316 SGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSN-FLSHTSVSTALT-TVYSKLNEIESA 373

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R++FD+ P+ +L +WN +I  Y+ +     +  +F ++  NS + PN  T   ++ A A+
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM-QNSEFSPNPVTITCILSACAQ 432

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           L    +G+ +H +V  + FE  +++S +LI  YA CG +A A  +F  + KK+ V+WN+M
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTM 492

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           ISG+   G  ++A+ ++ EM    + P  VT + VL AC+
Sbjct: 493 ISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACS 532


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 339/571 (59%), Gaps = 49/571 (8%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L  A+++FD++P  N+ +W T+I AYS+ A+     + FL L+      PN FT+  
Sbjct: 13  FGLLHDAQDVFDKMPDRNVVSWTTMISAYSA-AKLNDKALEFLVLMLREGVRPNMFTYSS 71

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++A   L   R    +H  +IK   + D+F+ ++LI  Y+  G+L  A  VF  +   D
Sbjct: 72  VLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGD 128

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +V W+S+I+GF Q    ++A+ L++ M+       + T+ +VL AC     LE GR    
Sbjct: 129 LVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGR---- 184

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                                                V +H     Q + LN     +L+
Sbjct: 185 ------------------------------------QVHVHVLKYDQDLILN----NALL 204

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ A  VF  +  +DV  WSTMIAG A  G  +EAL LF  M+   +KPN V
Sbjct: 205 DMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYV 264

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GLV+EG  +F+ M+ ++G+ PG +HY CM+D+LGRAG L EAV+ I +
Sbjct: 265 TIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINE 324

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P A  W ALL AC++H NV++A +A   +L L+P++ G  VLLSNIYA T +W++V
Sbjct: 325 MECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDV 384

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +E+R+ M   G+KKEPGCS IEV+ +IH F+ G+ SHP  +EI  +L++++ +L   GYV
Sbjct: 385 AEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYV 444

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +LQ +E E +Q+ +L  HSE+LAI +GL+S+   Q IRI KNLR+CGDCH   KL
Sbjct: 445 PDTNFVLQDLEGEQMQD-SLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKL 503

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++K+  R I++RD  R+HHF+ G CSC D+W
Sbjct: 504 LAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L   LI+MY K G L  A +VF  +  R+V  W+TMI+ ++      +AL+    M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGL 434
            V+PN  T+++VL AC       +G     Q+       G+   V   + ++D+  R G 
Sbjct: 61  GVRPNMFTYSSVLRAC-------DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGE 113

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGA 460
           L+ A+   ++M +     VW +++  
Sbjct: 114 LENALRVFDEM-VTGDLVVWSSIIAG 138


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/534 (42%), Positives = 332/534 (62%), Gaps = 19/534 (3%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF----RVGQAIH 162
           N LIRA + SA P  +  ++  L+  + + P   T P ++K+ A          +  A+H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLL-RAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 163 GMVIKSSFEDDLFISNSLIHFYA-ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
              +K      L +SN+LI  +A I G L+ A  +       D  ++N++I+ + + G  
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
             A  L+ EM   N     V+  A+++   +  D   GR   EAL +F  +Q +  V PD
Sbjct: 294 TDARALFDEMPARNA----VSWSAMVNGYVQAGD---GR---EALGLFARMQ-ADGVRPD 342

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +   V VL+ACAQLG ++ G  +H  +K   I++  +L T+L+DMY KCG +  A+EVF 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K ++V  W+TMI G AM+G G EAL+LFS+M+   VKP+ + F   LCAC+H+GLVD+
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR  F+ M   YG+ P ++HY CMVD+L R GLL+EA E +EKMP+ P A +WGAL+  C
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC 522

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + H+NVELAEY   H +ELEP+  GA VLL NIYA +G+  +  E+R  MR  G+ K PG
Sbjct: 523 RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPG 582

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQ 580
           CS++E+ G IH+F+ G+ SHP  +EI SK DEI +R++   GYVP++  +L  +EEE+ +
Sbjct: 583 CSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEE-K 641

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           E AL+ HSE++AIA+ LI+     PIRIVKNLRVC DCH V KLISK+++  ++
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 47/299 (15%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           +LRT    D  + + L T  A      +  AR +FD++P  N  +W+ ++  Y  + +  
Sbjct: 268 LLRTAASVDASTFNTLIT--AYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++  +F ++  +    P++     V+ A A+L     G+ +HG +  ++    +F+  +L
Sbjct: 326 EALGLFARMQADG-VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  YA CG++ +A  VF ++ +K+V++W +MI G    G   +A+EL+ +ME   VKPD+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
           +  +  L AC                                             G +D 
Sbjct: 445 IAFIGALCAC------------------------------------------THTGLVDK 462

Query: 301 GVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAG 357
           G ++   M +K GIK        ++D+  + G L++A E+   +  + D  +W  ++AG
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/679 (36%), Positives = 378/679 (55%), Gaps = 83/679 (12%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFDQ 97
           +++ C  +  L   +++H  ++R G   D    + L T    C    FS    AR +FD+
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-DIFS----ARLVFDR 255

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF--PNEFTFPFVIKAAARLVQF 155
           +P+ +  +WN +I  Y  +   ++   +F  +     +F  P+  T   VI A   L   
Sbjct: 256 MPRRDRISWNAMISGYFENDVCLEGLRLFFMM---REFFVDPDLMTMTSVISACEALGDE 312

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           R+G+ +HG VIK+ F  ++ ++NSLI  ++  G    A  VF  +  KD+VSW +MISG+
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG---------------- 259
            + G  EKA+E Y  ME E V PDE+T+ +VLSACA    L+ G                
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 260 -------------RWPNEALSIFHEL-----------------------------QLSKN 277
                        R  ++AL +FH +                             Q+  +
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P+  T VSVLSACA++GA+  G +IHA   + G+  + +L  +L+DMY +CG ++ A 
Sbjct: 493 LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAW 552

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
             F++ + +DV  W+ ++ G+A  G G  A++LF +M E+ V P+ +TFT++LCACS SG
Sbjct: 553 NQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           +V +G  +F  ME  + + P +KHY  +VD+LGRAG L++A EFI+KMPI P  ++WGAL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+I++NVEL E A  H+ E++ ++ G  +LL N+YA +GKWD V+ +RK MR + L 
Sbjct: 672 LNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLT 731

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            +PGCS +EV G++H FL G+  HP  KEI + L+    ++++ G   ++         +
Sbjct: 732 VDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDS-----RRD 786

Query: 578 DVQEQALNL---HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           D+      +   HSERLAIA+GLI+  P  PI + KNL +C +CH   K ISK+  R I 
Sbjct: 787 DIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGIS 846

Query: 635 LRDRYRFHHFRGGNCSCMD 653
           +RD  +FHHF+ G CSC D
Sbjct: 847 VRDTEQFHHFKDGVCSCGD 865



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 63/379 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L  A  +F ++ + +L++WN L+  Y+ +    ++  ++ ++++     P+ +TFP 
Sbjct: 142 FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR-PDVYTFPC 200

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++    L     G+ +H  VI+  FE D+ + N+LI  Y  CGD+  A  VF  + ++D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---- 260
            +SWN+MISG+ +     + + L+  M    V PD +TM +V+SAC    D   GR    
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 261 --------------------------WPNEALSIFHELQLS------------------- 275
                                     W +EA  +F +++                     
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCW-DEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 276 -----------KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                      + V PDE T  SVLSACA LG +D G+ +H    + G+     +  SLI
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLI 439

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY+KC  +DKALEVFH + +++V  W+++I G  +     EAL  F +M    +KPN+V
Sbjct: 440 DMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSV 498

Query: 385 TFTNVLCACSHSGLVDEGR 403
           T  +VL AC+  G +  G+
Sbjct: 499 TLVSVLSACARIGALSCGK 517



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 89/358 (24%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +H  V K+     + + N+L+  +   GDL  A+ VF  + ++D+ SWN ++ G+ +
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G+F++A+ LY  M    ++PD  T   VL  C    DL  GR                 
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGR----------------- 215

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                    ++H  + + G + +  +  +LI MY KCG++  A 
Sbjct: 216 -------------------------EVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC---- 393
            VF  +  RD   W+ MI+G+       E L LF  M+E  V P+ +T T+V+ AC    
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 394 -------------------------------SHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
                                          S  G  DE  M F++ME        +  +
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME-----FKDLVSW 365

Query: 423 TCMVDMLGRAGLLDEAVE---FIEKMPIVPGASVWGALLGACK----IHENVELAEYA 473
           T M+    + GL ++AVE    +E   +VP      ++L AC     + + + L E+A
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFA 423



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 20/274 (7%)

Query: 41  VFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           + S++  C  +  L +   +H    RTGL      A+ L   ++ C       ++ A E+
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC-----RCIDKALEV 454

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F +IP  N+ +W ++I     +    ++   F Q++ +    PN  T   V+ A AR+  
Sbjct: 455 FHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLK--PNSVTLVSVLSACARIGA 512

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ IH   +++    D F+ N+L+  Y  CG +  A+  F    +KDV SWN +++G
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTG 571

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G    A+EL+ +M   +V PDE+T  ++L AC++   +       + L  F  ++ 
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMV------TDGLEYFESMEH 625

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
             ++ P+   + SV+    + G ++   +   KM
Sbjct: 626 KFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM 659



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 223 KAIELYREMEMENVKPDEVTM----VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           + I L +  E+  + P  +T       +L  C K  DLE      +AL     +Q    V
Sbjct: 39  RQISLRKHHEISVLNPSSITAQNPNSLILELCLKG-DLE------KALIHLDSMQ-ELQV 90

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           + +E T++++L  C    A   G ++H+ + K   +L   L  +L+ M+ + G+L +A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  RD+F W+ ++ G+A  G   EAL+L+ RM    ++P+  TF  VL  C   GL
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC--GGL 208

Query: 399 VDEGRMFFNQMEPV-YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            D  R     +  + YG    V     ++ M  + G +  A    ++MP     S W A+
Sbjct: 209 PDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS-WNAM 267

Query: 458 LGA 460
           +  
Sbjct: 268 ISG 270


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 359/619 (57%), Gaps = 56/619 (9%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFD-PYSASKLFTPCALGTFSSLEYAREMFDQI 98
           +L+K+C  + +LK+   +H  +L +    D     S LF     G   SLE AR +FD++
Sbjct: 79  TLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG---SLEGARRLFDEM 135

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  ++ +W ++I  Y+ +     + ++F +++ +    PNEFT   ++K    +  +  G
Sbjct: 136 PHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAE-PNEFTLSSLVKCCGYMASYNCG 194

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + IH    K     ++F+ +SL+  YA CG L  A  VF  +G K+ VSWN++I+G+ + 
Sbjct: 195 RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARK 254

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E                                         EAL++F  +Q  +  
Sbjct: 255 GEGE-----------------------------------------EALALFVRMQ-REGY 272

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P EFT+ ++LS+C+ +G ++ G  +HA + K   KL  Y+  +L+ MY K G++  A +
Sbjct: 273 RPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEK 332

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +   DV   ++M+ G+A +G G+EA   F  M    ++PN +TF +VL ACSH+ L
Sbjct: 333 VFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARL 392

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +DEG+ +F  M   Y + P V HY  +VD+LGRAGLLD+A  FIE+MPI P  ++WGALL
Sbjct: 393 LDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GA K+H+N E+  YA   + EL+P   G   LL+NIYA  G+W++V+++RK M+ SG+KK
Sbjct: 452 GASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKK 511

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           EP CS +EV   +H F+A + +HP  ++I+   +++  ++K  GYVP+ SH+L  V   D
Sbjct: 512 EPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFV---D 568

Query: 579 VQEQALNL--HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            QE+ LNL  HSE+LA+++ L++  P   IRI+KN+RVCGDCH+  K +S +  REI++R
Sbjct: 569 QQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVR 628

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF  G CSC DYW
Sbjct: 629 DTNRFHHFCDGFCSCGDYW 647


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 347/631 (54%), Gaps = 45/631 (7%)

Query: 27  TLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF- 85
           +++ ++G  H    + SLI        L+QIH  +LRT L  +        +  AL    
Sbjct: 4   SISSSSGDDH----LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIP 59

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             + Y+  +F Q   P L   NT+IRA+S S  P + F +F  L  NS    N  +  F 
Sbjct: 60  RDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFA 119

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +K   +      G  IHG +    F  D  +  +L+  Y+ C +   A  VF  I K+D 
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWN + S +++       + L+ +M+ +            +  C K             
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKND------------VDGCVK------------- 214

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                         PD  T +  L ACA LGA+D G Q+H  + + G+     L+ +L+ 
Sbjct: 215 --------------PDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVS 260

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CG++DKA +VF+ ++ R+V  W+ +I+G AM G G+EA++ F+ M +  + P   T
Sbjct: 261 MYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQT 320

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
            T +L ACSHSGLV EG MFF++M    + + P + HY C+VD+LGRA LLD+A   I+ 
Sbjct: 321 LTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKS 380

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M + P +++W  LLGAC++H +VEL E   SHL+EL+ E  G  VLL N Y+  GKW+ V
Sbjct: 381 MEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKV 440

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +ELR  M+   +  +PGCS+IE+ G +H+F+  + SHP  +EIY  L EI  +LK  GYV
Sbjct: 441 TELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYV 500

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
              +  L  +E E+ +  AL  HSE+LAIA+G++   P   IR+ KNLR C DCH  AK 
Sbjct: 501 AEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKF 560

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +S +Y+R +++RDR RFHHF+GG+CSC D+W
Sbjct: 561 VSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/645 (37%), Positives = 347/645 (53%), Gaps = 87/645 (13%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQH--HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           ST + ++P  P   +    +   H    + +  LI + K I  L QIH  + R GL   P
Sbjct: 3   STTLFTIPPSPATGSPPTTSTTHHFISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHP 62

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
               KL    A  +   L+Y+  +F +   P+++ W  +I  ++   + + +  +F    
Sbjct: 63  ILNFKLQRSYA--SLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLF---- 116

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
                     T P                           E  L    +++  YA  G+L
Sbjct: 117 ---------DTMP---------------------------EKSLVSLTAMLTCYAKHGEL 140

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             A  +F  + ++D V WN MI G+ Q G   +A+ L+R M     KP+EVT+++VLSAC
Sbjct: 141 DAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
            +   LE GRW                                          +H+ ++ 
Sbjct: 201 GQLGALESGRW------------------------------------------VHSYIEN 218

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            GI+ N ++ T+L+DMY+KCG+L+ A  VF  +  +DV  W++MI G+AM+G  +EAL L
Sbjct: 219 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 278

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F  M    + P  +TF  +L AC HSG V EG   FN+M+  YG+ P ++HY CMV++LG
Sbjct: 279 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 338

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG +++A E ++ M I P   +WG LLGAC++H  + L E     L++    N G  +L
Sbjct: 339 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 398

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           LSNIYA  G WD V+ LR  M+ SG+KKEPGCSSIEVN ++H+FLAG  +HP  KEIY  
Sbjct: 399 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMM 458

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           L+EI   LKS GY P    +L  + E + +E++L +HSE+LAIA+GLI+ +P   I+IVK
Sbjct: 459 LEEINGWLKSHGYTPQTDIVLHDIGETE-KERSLEVHSEKLAIAFGLINTQPGTTIKIVK 517

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLRVC DCH V KLISK+  R+I++RDR RFHHF  G+CSC DYW
Sbjct: 518 NLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/624 (38%), Positives = 353/624 (56%), Gaps = 27/624 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + S +  C N+ Q+KQIH  +LR GL    Y  +KL             Y R + + +  
Sbjct: 53  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQF 112

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N + W  +IR Y+   +  ++  ++   +      P  FTF  ++KA   +    +G+ 
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMY-GCMRKEEITPVSFTFSALLKACGSMGDLNLGRQ 171

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
            H    +      +++ N++I  Y  CG +  A  VF  + ++DV+SW  +I+ + + G 
Sbjct: 172 FHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGN 231

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E A +L+  +  +    D V   A+++  A+         P EAL  F  ++ S  +  
Sbjct: 232 MESAADLFESLPTK----DMVAWTAMVTGFAQNAK------PQEALEYFDRMEKS-GIRA 280

Query: 281 DEFTFVSVLSACAQLGA---MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           DE T    +SACAQLGA    D  VQI A+        +  + ++LIDMY+KCGN+++A+
Sbjct: 281 DEVTVAGYISACAQLGASKYADRAVQI-AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAV 339

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHS 396
            VF ++ +++VF +S+MI G A +G  +EALDLF  M  +  +KPN VTF   L ACSHS
Sbjct: 340 NVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHS 399

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLVD+GR  F  M   +GV P   HYTCMVD+LGRAG L EA+E I+ M + P   VWGA
Sbjct: 400 GLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGA 459

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGAC+IH N ++AE A  HL ELEP+  G  +LLSN+Y+  G W  V  +RK ++  GL
Sbjct: 460 LLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGL 519

Query: 517 KKEPGCS-SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           KK P  S  ++ NG++HKF  G  +HP+ K+I  KL+E+V RL + GY P+ S +     
Sbjct: 520 KKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSV----- 574

Query: 576 EEDVQEQALNL----HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             DV + A  L    H+E+LA+A+ L++      I+I+KNLR+C DCH   +L S++  R
Sbjct: 575 PYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGR 634

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
            I++RD  RFHHFR G CSC D+W
Sbjct: 635 VIIMRDNMRFHHFRSGACSCGDFW 658


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 352/630 (55%), Gaps = 61/630 (9%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYFPN 138
           L     L  AR++FD + +  +  W  LI  Y     + E ++ F+ FL+      + P+
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE----DGFEPD 253

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG-DLAMAYC-- 195
            +T   +I A   L   R+G  +H + ++     D  +S  L+  YA      AM Y   
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANK 313

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFE-KAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
           VF  + K DV+SW ++ISG+VQ G  E K + L+ EM  E++KP+ +T  ++L +CA   
Sbjct: 314 VFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASIS 373

Query: 255 DLEFGRWPN-----------------------------EALSIFHELQ------------ 273
           D + GR  +                             EA  +F++L             
Sbjct: 374 DHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGR 433

Query: 274 --------LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                   +  +V     TF S++SA A +G +  G Q+HA   K G   + +++ SL+ 
Sbjct: 434 DFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVS 493

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CG L+ A   F+ +K R+V  W++MI+G A +G    AL LF  M    VKPN VT
Sbjct: 494 MYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVT 553

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  VL ACSH GLV EG+ +F  M+  +G++P ++HY CMVD+L R+G++ EA+EFI +M
Sbjct: 554 YIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEM 613

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+   A VW  LLGAC+ H+N+E+ E    +++ELEP +    VLLSN+YA  G WD V+
Sbjct: 614 PLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVA 673

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R  MR + L KE G S +EV    H+F AG++SHP  ++IY KLD +V ++K  GYVP
Sbjct: 674 RIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVP 733

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S +L  + +E ++EQ L  HSE++A+A+GLI+    +PIRI KNLRVC DCH+  K +
Sbjct: 734 DTSIVLHDMSDE-LKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYM 792

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK   REI+LRD  RFH  + G CSC +YW
Sbjct: 793 SKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 67/402 (16%)

Query: 18  SLPRHPNPTTL--TVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF-FDPYSAS 74
           + PR+P        +++ H      + +   +  +++  + +H ++LR  L   D   A+
Sbjct: 29  TFPRYPRSLAAHPALSSSHPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVAN 88

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
            L T        ++  AR +FD +    ++ +W  +    + +     S ++  +++  S
Sbjct: 89  SLLT--LYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEML-ES 145

Query: 134 PYFPNEFT--------FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
              PN +T        FP  +      V       +H M +   +  D+ + ++LI   A
Sbjct: 146 GLLPNAYTLCAAAHACFPHELYCLVGGVVL---GLVHKMGL---WGTDVAVGSALIDMLA 199

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
             GDLA A  VF  + +K VV W  +IS +VQG   E+A+EL+ +   +  +PD  TM +
Sbjct: 200 RNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSS 259

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
           ++SAC                                           +LG++ +G+Q+H
Sbjct: 260 MISAC------------------------------------------TELGSVRLGLQLH 277

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           +   + G+  +  ++  L+DMY K      +D A +VF  +   DV  W+ +I+G+   G
Sbjct: 278 SLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSG 337

Query: 363 CGR-EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
               + + LF  M    +KPN +T++++L +C+     D GR
Sbjct: 338 VQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGR 379


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/682 (36%), Positives = 368/682 (53%), Gaps = 74/682 (10%)

Query: 40   PVFSLIKQCKNIKQLK---QIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYARE 93
             V SL+  C ++  L    Q+H+  ++ G+  D     S   L++ CA      +E A +
Sbjct: 364  TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA-----DVETAHK 418

Query: 94   MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
             F      N+  WN ++ AY        SF IF Q+       PN+FT+P +++    L 
Sbjct: 419  FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG-MIPNQFTYPSILRTCTSLG 477

Query: 154  QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
               +G+ IH  VIK+ F+ ++++ + LI  YA  G LA+A  +   + + DVVSW +MI+
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 214  GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------------ 261
            G+VQ   F +A++L+ EME   ++ D +   + +SACA  R L  G+             
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 262  ----PNEALSIFHE--------LQLSKNVNPDEFTFVSVLSACAQLG----AMDI----- 300
                 N  +S++          L   K  + +  ++ S++S  AQ G    A+ +     
Sbjct: 598  DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657

Query: 301  --------------------------GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                                      G QIH+ + K G      ++ SLI +Y K G++ 
Sbjct: 658  RTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 335  KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
             A   F+ +  R+V  W+ MI G++ +GCG EAL LF  M+   + PN VTF  VL ACS
Sbjct: 718  DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 395  HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            H GLV EG  +F  M  ++ +VP  +HY C+VD+LGRAG LD A+E+I++MPI   A +W
Sbjct: 778  HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 455  GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
              LL AC IH+N+E+ E A  HLLELEPE+    VL+SNIYA + +W +    RK M+  
Sbjct: 838  RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDR 897

Query: 515  GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            G+KKEPG S IEV   +H F AG+  HPL  +IY  +  +  R    GYV +   LL   
Sbjct: 898  GVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLN-- 955

Query: 575  EEEDVQEQAL-NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
            E E  Q+  + ++HSE+LAIA+GL+S+  + PIR++KNLRVC DCH   K +SK+ NR I
Sbjct: 956  ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSI 1015

Query: 634  LLRDRYRFHHFRGGNCSCMDYW 655
            ++RD +RFHHF GG CSC D+W
Sbjct: 1016 IVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 198/412 (48%), Gaps = 47/412 (11%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +KQ+H++    G    P  A+ L    +   +  +E A+++F+ I   ++ TW  +I   
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAMISGL 236

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +    ++ ++F  + + S  FP  +    V+ A+ ++  F +G+ +H +VIK  F  +
Sbjct: 237 SQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N L+  Y+    L  A  +F  +  +D VS+NS+ISG VQ GF ++A+EL+ +M+ 
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           + +KPD +T+ ++LSACA                                          
Sbjct: 356 DCLKPDCITVASLLSACAS----------------------------------------- 374

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            +GA+  G+Q+H+   K G+  +  L  SL+D+Y+KC +++ A + F T ++ ++ +W+ 
Sbjct: 375 -VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNV 433

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           M+  +       ++ ++F +MQ   + PN  T+ ++L  C+  G +  G      +    
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT- 492

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           G    V   + ++DM  + G L  A+  + ++P     S W A++     H+
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAMIAGYVQHD 543



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 179/430 (41%), Gaps = 49/430 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +Q+H  +++ G   + Y  + L    AL + S  L  A  +F  +   +  ++N+LI   
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGL---VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGL 337

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                  ++  +F ++  +    P+  T   ++ A A +     G  +H   IK+    D
Sbjct: 338 VQQGFSDRALELFTKMQRDCLK-PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + +  SL+  Y+ C D+  A+  F+    +++V WN M+  + Q      + E++R+M+M
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           E + P++ T  ++L  C                                           
Sbjct: 457 EGMIPNQFTYPSILRTCTS----------------------------------------- 475

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            LGA+ +G QIH  + K G +LN Y+ + LIDMY K G L  AL +   +   DV  W+ 
Sbjct: 476 -LGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+  +    EAL LF  M+   ++ + + F + + AC+    + +G+    Q     
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAA- 593

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G    +     ++ +  R G + EA    EK+      S W +L+         E A   
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQV 652

Query: 474 CSHLLELEPE 483
              +L  E E
Sbjct: 653 FVRMLRTEAE 662



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 146/376 (38%), Gaps = 85/376 (22%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  + KS F+ +  + +SL+  Y   GD   A  VF     + V SWN MI  FV    
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             +   L+R M  E + P+  T   VL AC                           V  
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKAC---------------------------VGG 172

Query: 281 D-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           D  F +V                Q+H++    G   +  +   LID+Y+K G ++ A +V
Sbjct: 173 DIAFNYVK---------------QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ +  +D+  W  MI+G +  G   EA+ LF  M  +++ P     ++VL A +   L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 400 DEGRM---------FFNQMEPVYGVVP----------------------GVKHYTCMVDM 428
           + G           F ++     G+V                       GV  Y  ++  
Sbjct: 278 ELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISG 336

Query: 429 LGRAGLLDEAVEFIEKMP---IVPGASVWGALLGAC----KIHENVELAEYACSHLLELE 481
           L + G  D A+E   KM    + P      +LL AC     +H+ ++L  +A    +  +
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 482 PENHGALVLLSNIYAK 497
               G+L+   ++Y+K
Sbjct: 397 IILEGSLL---DLYSK 409



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + V  +   ++ +L  C   G++   +++H ++ K G      L  SL+D Y + G+   
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++VF    +R VF W+ MI  F       +   LF RM    + PN  TF  VL AC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV- 170

Query: 396 SGLVDEGRMFFNQMEPV------YGVVPGVKHYTCMVDMLGRAGLLDEA 438
                 G + FN ++ V      YG          ++D+  + G ++ A
Sbjct: 171 -----GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 353/577 (61%), Gaps = 35/577 (6%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S +E A++MF+++PQ ++ +WNT++  Y+   +     M   + +++     + FT+  +
Sbjct: 276 SQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGD-----MAEARRLFDVAPIRDVFTWTAI 330

Query: 146 IKAAARLVQFRVGQAIHGMV-----IKSSFEDDLFIS-NSLIHFYAICGDLAMAYCVFVM 199
           +           G A +GM+     +  +  D   +S N+++  Y     +  A  +F  
Sbjct: 331 VS----------GYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDA 380

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           +  ++V SWN+M++G+ Q G  ++A  ++  M     + D V+  A+L+A +     + G
Sbjct: 381 MPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP----QKDAVSWAAMLAAYS-----QIG 431

Query: 260 RWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
            +  E L +F E+ +  + VN     F  VLS CA + A++ G+Q+H+++ K G  + C+
Sbjct: 432 -FSEETLQLFKEMGRCGEWVN--RSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCF 488

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           +  +L+ MY KCG++++A   F  ++ RDV  W+TMIAG+A +G G+EAL++F  M++  
Sbjct: 489 VGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTS 548

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
            KP+ +T   VL ACSHSGLV++G  +F  M   +GV    +HYTCM+D+LGRAG LDEA
Sbjct: 549 TKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEA 608

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
           V  ++ MP  P +++WGALLGA +IH N EL   A   + ELEPEN G  VLLSNIYA +
Sbjct: 609 VNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASS 668

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
           GKW +V ++R  M   G+KK PG S IEV  ++H F  G+S HP  ++IY+ L+++  R+
Sbjct: 669 GKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRM 728

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K  GYV     +L  VEEE+ +E  L  HSE+LA+AYG++ + P +PIR++KNLRVC DC
Sbjct: 729 KKAGYVSATDMVLHDVEEEE-KEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDC 787

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           HT  K IS +  R I+LRD  RFHHFR G+CSC DYW
Sbjct: 788 HTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I  + + G +  A  +F  +  R    ++TM+AG+A  G   +AL  F  +     +P++
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDS 169

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            ++  +L A   S  + + R  F++M PV   V     Y  M+      GL+  A  + +
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEM-PVKDSVS----YNVMISSHANHGLVSLARHYFD 224

Query: 444 KMPIVPGASVWGALLGA----CKIHENVEL 469
             P     S W  +L A     +I E  EL
Sbjct: 225 LAPEKDAVS-WNGMLAAYVRNGRIQEAREL 253


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/534 (42%), Positives = 332/534 (62%), Gaps = 19/534 (3%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF----RVGQAIH 162
           N LIRA + SA P  +  ++  L+  + + P   T P ++K+ A          +  A+H
Sbjct: 175 NALIRALAGSARPHLALPLYAHLL-RAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVH 233

Query: 163 GMVIKSSFEDDLFISNSLIHFYA-ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
              +K      L +SN+LI  +A I G L+ A  +       D  ++N++I+ + + G  
Sbjct: 234 AHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRV 293

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
             A  L+ EM   N     V+  A+++   +  D   GR   EAL +F  +Q +  V PD
Sbjct: 294 TDARALFDEMPARNA----VSWSAMVNGYVQAGD---GR---EALGLFARMQ-ADGVRPD 342

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +   V VL+ACAQLG ++ G  +H  +K   I++  +L T+L+DMY KCG +  A+EVF 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K ++V  W+TMI G AM+G G EAL+LFS+M+   VKP+ + F   LCAC+H+GLVD+
Sbjct: 403 VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDK 462

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           GR  F+ M   YG+ P ++HY CMVD+L R GLL+EA E +EKMP+ P A +WGAL+  C
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC 522

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + H+NVELAEY   H +ELEP+  GA VLL NIYA +G+  +  E+R  MR  G+ K PG
Sbjct: 523 RFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPG 582

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQ 580
           CS++E+ G IH+F+ G+ SHP  +EI SK DEI +R++   GYVP++  +L  +EEE+ +
Sbjct: 583 CSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEE-K 641

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           E AL+ HSE++AIA+ LI+     PIRIVKNLRVC DCH V KLISK+++  ++
Sbjct: 642 ENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 47/299 (15%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           +LRT    D  + + L T  A      +  AR +FD++P  N  +W+ ++  Y  + +  
Sbjct: 268 LLRTAASVDASTFNTLIT--AYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++  +F ++  +    P++     V+ A A+L     G+ +HG +  ++    +F+  +L
Sbjct: 326 EALGLFARMQADG-VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  YA CG++ +A  VF ++ +K+V++W +MI G    G   +A+EL+ +ME   VKPD+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
           +  +  L AC                                             G +D 
Sbjct: 445 IAFIGALCAC------------------------------------------THTGLVDK 462

Query: 301 GVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAG 357
           G ++   M +K GIK        ++D+  + G L++A E+   +  + D  +W  ++AG
Sbjct: 463 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/624 (40%), Positives = 357/624 (57%), Gaps = 49/624 (7%)

Query: 35  QHHPHPVFS-LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
            HHP P  S L+        LKQ H +++ TG        +KL T       +   +   
Sbjct: 3   SHHPSPEHSSLLLAGPRGGPLKQAHARLVVTGHGRSLPLITKLATLAVAAGAAPYAHL-- 60

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +    P P+ + +++L R  +    P+ +   +  L+  +  F + FTF  V KA A L 
Sbjct: 61  LATSHPAPDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPF-SSFTFTAVAKACADLS 119

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             R G AIH   I   F  D F+  +L+  Y+ CG L +A  +F  I  + VV+WN+MIS
Sbjct: 120 ALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMIS 179

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ Q G  E+ I +Y+E                                         +Q
Sbjct: 180 GYEQNGLAERGIGVYKE-----------------------------------------MQ 198

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
            +K V PD  TFV+ LSACAQ GA+D+G ++  ++  + + ++ +L ++L++MY +CG +
Sbjct: 199 AAKAV-PDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVV 257

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           DKA   F  ++ R+V  W++MIAG+ M+G GREA+ LF  M+     PN VTF  VL AC
Sbjct: 258 DKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSAC 317

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGAS 452
           +H+GLV EGR  F  M+ VYG+VP V+HY  MVDM GRAGLLDEA++FI + MP  PG  
Sbjct: 318 AHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPE 377

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VW A+LGACK+H+N  L       L+ LEPEN    VLLSNIYA +GK  +V ++R  M 
Sbjct: 378 VWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMI 437

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              LKK+ G S IE+ G  H F  GE SHP   EIY  L+E++ R+ + GY+P  +  + 
Sbjct: 438 KRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPE-TESVL 496

Query: 573 LVEEEDVQEQALNLHSERLAIAYGL-ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
              EE+ +E AL  HSE+LA+AYGL +SV  + PIR++KNLR+CGDCH   K +S + NR
Sbjct: 497 HELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENR 556

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD++RFHHF+ G CSC++YW
Sbjct: 557 EIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/617 (37%), Positives = 342/617 (55%), Gaps = 61/617 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFT-----PCAL------------GTFSSLEYAREMFDQI 98
            +H   +R+G F D ++A+ L       PC+             G+ ++ E  R++FD++
Sbjct: 71  SLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEM 130

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            + ++ +WNTL+   +      ++ + F++ +    + P+ FT   V+   A     + G
Sbjct: 131 IERDVVSWNTLVLGCAEEGRHHEA-LGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRG 189

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +HG   ++ F+ D+F+ +SLI  YA C     +  VF  +  +D + WNS+++G  Q 
Sbjct: 190 LEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQN 249

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E                                         EAL IF  + L   V
Sbjct: 250 GSVE-----------------------------------------EALGIFRRM-LQAGV 267

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P   TF S++  C  L ++  G Q+HA +   G + N ++++SLIDMY KCG +  A  
Sbjct: 268 RPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHC 327

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  + S DV  W+ MI G+A++G  REAL LF RM+    KPN +TF  VL ACSH+GL
Sbjct: 328 IFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGL 387

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VD+G  +F  M   YG+VP ++H+  + D LGRAG LDEA  FI KM I P ASVW  LL
Sbjct: 388 VDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLL 447

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            AC++H+N  LAE     ++ELEP + G+ V+LSN+Y+ +G+W+  + LR+ MR  G+KK
Sbjct: 448 RACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKK 507

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           +P CS IEV  ++H F+A + SHP    I   L+    ++   G+VPN   + Q +EEE 
Sbjct: 508 DPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEH 567

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +   L  HSE+LAI +G+IS      IR++KNLRVC DCHTV K ISKL +REI++RD 
Sbjct: 568 -KSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDA 626

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ GNCSC D+W
Sbjct: 627 NRFHHFKDGNCSCGDFW 643



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 135/269 (50%), Gaps = 9/269 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           V  +  +C ++K+  ++H    R G   D +  S L    A  T +  +Y+ ++FD +P 
Sbjct: 176 VLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRT--DYSVKVFDNLPV 233

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            +   WN+L+   + +    ++  IF +++  +   P   TF  +I     L   R G+ 
Sbjct: 234 RDHILWNSLLAGCAQNGSVEEALGIFRRML-QAGVRPVPVTFSSLIPVCGNLASLRFGKQ 292

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  VI   FED++FIS+SLI  Y  CG++++A+C+F  +   DVVSW +MI G+   G 
Sbjct: 293 LHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGP 352

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             +A+ L+  ME+ N KP+ +T +AVL+AC+    ++ G W       F  +     + P
Sbjct: 353 AREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKG-W-----KYFKSMSNHYGIVP 406

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
               F ++     + G +D      +KM+
Sbjct: 407 TLEHFAALADTLGRAGELDEAYNFISKMQ 435



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 36/234 (15%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSV---LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
           +A+S+F  L++  +  P      S+   L +CA LG   +G  +HA   + G   + +  
Sbjct: 31  DAVSLF--LRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTA 88

Query: 321 TSLIDMYTK--CGNLDKA-----------------LEVFHTVKSRDVFVWSTMIAGFAMY 361
            +L+++Y K  C  LD                    +VF  +  RDV  W+T++ G A  
Sbjct: 89  NALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEE 148

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVL-----CACSHSGLVDEGRMFFNQMEPVYGVV 416
           G   EAL    +M     +P++ T + VL     CA    GL   G  F N      G  
Sbjct: 149 GRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRN------GFD 202

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             V   + ++DM       D +V+  + +P V    +W +LL  C  + +VE A
Sbjct: 203 SDVFVGSSLIDMYANCTRTDYSVKVFDNLP-VRDHILWNSLLAGCAQNGSVEEA 255


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 347/639 (54%), Gaps = 65/639 (10%)

Query: 23  PNPTTLTVN---NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKL 76
           PNP+ LT+          PHP          ++  +Q+H + L+     +P+   S   L
Sbjct: 66  PNPSHLTIPIALKSASRLPHP----------LRAGEQLHARSLKLPSHTNPHVLTSLLSL 115

Query: 77  FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           +  C L     L  A+ +FD++P P+   W  LI AY  + +  ++  +      N    
Sbjct: 116 YAKCGL-----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MR 169

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FT   V+ A AR+     G+ +     +      +F++ + +  Y  CG++A A  V
Sbjct: 170 PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD V+W +M+ G+   G                                     
Sbjct: 230 FDKMRHKDAVAWGAMVGGYASNGH------------------------------------ 253

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                P EAL +F  +Q ++ + PD +     LSAC +LGA+D+G Q    +       N
Sbjct: 254 -----PREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             L T+LIDMY KCG+  +A  VF  ++ +D+ VW+ MI G  M G  + A  L  +M++
Sbjct: 308 PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 367

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + VK N  TF  +LC+C+H+GL+ +GR +F+ M  +Y + P ++HY CMVD+L RAGLL 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 427

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA + ++ MP+   A + GALLG CKIH N ELAE+    L+ LEP N G  V+LSNIY+
Sbjct: 428 EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 487

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
             G+W++ ++LR  M+  G++K P CS +E  G++H+F  G+ SHPL  +IY KLDE+  
Sbjct: 488 NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 547

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            +K+ GY P    ++  VE+E+ +E  L  HSE+LAIA+ L+   P + IR+ KNLRVC 
Sbjct: 548 EMKTMGYEPTTEVVMFDVEDEE-KEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCS 606

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCHT  KL+S++ +REI++RD  RFH FR G+CSC DYW
Sbjct: 607 DCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/518 (41%), Positives = 327/518 (63%), Gaps = 14/518 (2%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
             SL+++C NI +LKQIH Q+L+ G      + S+L T  A   FS+L YAR +FD+I  
Sbjct: 14  TMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISS 73

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQ 159
           PN   WNT+IRAYS+S +P ++ +++ Q++++S P+  N +TFPF++KA + L       
Sbjct: 74  PNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPH--NAYTFPFLLKACSALSALAETH 131

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  +IK  F  +++ +NSL+  YAI G +  A+ +F ++  +D+VSWN+MI G+++ G
Sbjct: 132 QIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCG 191

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E A ++++ M  +NV      +V  +     K          EAL +  ++ L   + 
Sbjct: 192 NVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHK----------EALCLLQQM-LVAGIK 240

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD+ T    LSACA LGA++ G  IH  + K  IK++  L  +LIDMY KCG + KAL V
Sbjct: 241 PDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLV 300

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ + V+ W+ +I GFA++G G EALD F++MQ+A +KP + TFT VL ACSH+GLV
Sbjct: 301 FSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLV 360

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG+  F  M   Y + P ++HY CMVD+LGRAG L EA EF+E MPI P A++WG+LL 
Sbjct: 361 EEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLN 420

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC +H+++EL +     L+EL+PE+ G  + L++I+A  G+WD  S++R H++  GL   
Sbjct: 421 ACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNL 480

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           PGCS+I +NG  H+F AG   HP  +E+Y   + I +R
Sbjct: 481 PGCSTITLNGVAHEFFAGAEPHPHVREMYDMSNLIASR 518


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/587 (38%), Positives = 340/587 (57%), Gaps = 57/587 (9%)

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
           Y+   LF  C           R++FD++   +L  W  +I AY  + +P ++ ++F ++ 
Sbjct: 2   YAKCGLFVDC-----------RKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQ 50

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
                  +      V  A  +L   +    +HG   + S  ++L + NS++  +  CG+ 
Sbjct: 51  QEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNT 110

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             A  VF M+ ++DV+SWNSM+SG+ Q G                               
Sbjct: 111 EKARLVFDMMMERDVISWNSMLSGYTQNG------------------------------- 139

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                        EAL +F E++ S +  P   T + ++SACA LG   +G + H  +  
Sbjct: 140 ----------QATEALLLFDEMRDS-DCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVD 188

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREAL 368
             ++++  L+ +L+DMY KCG+L+KA+++F+ +    R+   W+ +I+G+ M+G G+EAL
Sbjct: 189 SRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEAL 248

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           +LFSRMQE  V+PN  TFT++L ACSH+GL+DEGR  F +M+ +  V    KH+ C+VDM
Sbjct: 249 ELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRL-SVTLEDKHHACVVDM 307

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
           LGRAGLL EA + I++MP  P   VWGALL ACKIH N+EL + A S+LL+LEP + G  
Sbjct: 308 LGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYY 367

Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
           VL+SNIYA + KW  V +LR+ M+  GLKK    S IE   +I  F   +  +P   E+Y
Sbjct: 368 VLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVY 427

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
            K++ +   +K  GYVP+ S  L  VEEED +E+ LN HSE+LA+A+G++ ++P   IR+
Sbjct: 428 KKMESLAIEMKMAGYVPDLSCALHDVEEED-KERMLNYHSEKLAVAFGVLKIDPGMVIRV 486

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KNLRVC DCH+  K IS +Y R+I++RD  RFHHF+GG CSC DYW
Sbjct: 487 TKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 11/225 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFDQ 97
           V S + Q  ++K    +H    R  L  +     S   + T C      + E AR +FD 
Sbjct: 65  VASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCG-----NTEKARLVFDM 119

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + ++ +WN+++  Y+ + +  ++ ++F ++  +S   P   T   ++ A A L    +
Sbjct: 120 MMERDVISWNSMLSGYTQNGQATEALLLFDEM-RDSDCQPTPVTALIMVSACAYLGFRHL 178

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISGF 215
           G+  H  ++ S  E D  +SN+L+  YA CGDL  A  +F  I   +++  SWN +ISG+
Sbjct: 179 GRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGY 238

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
              G  ++A+EL+  M+ E V+P+  T  ++LSAC+    ++ GR
Sbjct: 239 GMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGR 283


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 324/559 (57%), Gaps = 45/559 (8%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P P+  +W  LI AY  +   +++  +  +  + S   P+ FT   V+ A AR+     
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGV-ARRAFASGMRPDSFTAVRVLTACARVADLET 59

Query: 158 GQAIHGMVIKS-SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           G+A+     +     + +F++ + +  Y  CG++  A  VF  +  +D V+W +M+ G+ 
Sbjct: 60  GEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G                                          P EAL +F  +Q+ +
Sbjct: 120 SNGH-----------------------------------------PREALDLFFAMQM-E 137

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
              PD +T V  LSAC +LGA+D+G Q    +    +  N  L T+LIDMY KCG+  +A
Sbjct: 138 GAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEA 197

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  +  RD+ VW+ MI G  M G  + A  L  +M+++ VK N  TF  +LC+C+H+
Sbjct: 198 WMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHT 257

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV++GR +F+ M  VY + P ++HY CMVD+  RAGLL+EA + I  MP++  A VWGA
Sbjct: 258 GLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGA 317

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLG CKIH N +LAE+A   L+ LEP N G  V+LSNIY+ +G+W++ ++LR  M+  G+
Sbjct: 318 LLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGI 377

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +K P  S +E++G++HKF  G+ SHPL  +IY+KLDE+   +K+ GY P    ++  VE 
Sbjct: 378 EKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVEN 437

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +E  L  HSE++AIA+ LI+ EP + IR+ KNLRVC DCH+  KLIS++  REI++R
Sbjct: 438 EE-KENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVR 496

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFH FR G+CSC DYW
Sbjct: 497 DNNRFHCFRDGHCSCNDYW 515



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 43/312 (13%)

Query: 68  FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
           F   +A  L+  C       +E AR +FD++   +   W  ++  Y+S+  P ++  +F 
Sbjct: 78  FVATAALDLYVKCG-----EMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFF 132

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
            +       P+ +T    + A  RL    +G+   GMV       +  +  +LI  YA C
Sbjct: 133 AMQMEGAK-PDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKC 191

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           G  + A+ VF  + ++D++ WN+MI G    G  + A  L  +M+   VK ++ T + +L
Sbjct: 192 GSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLL 251

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNP---------DEFTFVSVLSACAQL--- 295
            +C     +  GR        FH +     ++P         D F+   +L    QL   
Sbjct: 252 CSCTHTGLVNDGR------QYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGD 305

Query: 296 ----------GAMDIGVQIHAKMK------KQGIKLNCYLTTS---LIDMYTKCGNLDKA 336
                     GA+  G +IH          KQ I+L  + + +   L ++Y+  G  + A
Sbjct: 306 MPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDA 365

Query: 337 LEVFHTVKSRDV 348
            ++   +K++ +
Sbjct: 366 AKLRLEMKAKGI 377


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/569 (39%), Positives = 345/569 (60%), Gaps = 12/569 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           ++++ A+ +FD+    NL   N +   Y       ++  +F  L+ +S   P+  +    
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSA 343

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I + ++L     G++ HG V+++ FE    I N+LI  Y  C     A+ +F  +  K V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+WNS+++G+V+ G  + A E +  M  +N+    V+   ++S   +      G    EA
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQ------GSLFEEA 453

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  +Q  + VN D  T +S+ SAC  LGA+D+   I+  ++K GI+L+  L T+L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+++CG+ + A+ +F+++ +RDV  W+  I   AM G    A++LF  M E  +KP+ V 
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F   L ACSH GLV +G+  F  M  ++GV P   HY CMVD+LGRAGLL+EAV+ IE M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+ P   +W +LL AC++  NVE+A YA   +  L PE  G+ VLLSN+YA  G+W++++
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R  M+  GL+K PG SSI++ G+ H+F +G+ SHP    I + LDE+  R    G+VP
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S++L  V+E++ +   L+ HSE+LA+AYGLIS      IRIVKNLRVC DCH+ AK  
Sbjct: 754 DLSNVLMDVDEKE-KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           SK+YNREI+LRD  RFH+ R G CSC D+
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 203/387 (52%), Gaps = 50/387 (12%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY 71
           LS  V++      P+ L  +   +  P    S +K CK I +LK  H  + + GL  D  
Sbjct: 10  LSPMVLATTTTTKPSLLNQSKCTKATP----SSLKNCKTIDELKMFHRSLTKQGLDNDVS 65

Query: 72  SASKLFT-PCALGTFSSLEYAREMFDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
           + +KL    C LGT  SL +A+E+F+        + +N+LIR Y+SS    ++ ++FL++
Sbjct: 66  TITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRM 125

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + NS   P+++TFPF + A A+      G  IHG+++K  +  DLF+ NSL+HFYA CG+
Sbjct: 126 M-NSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL-YREMEMENVKPDEVTMVAVLS 248
           L  A  VF  + +++VVSW SMI G+ +  F + A++L +R +  E V P+ VTMV V+S
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK  DLE G                                           +++A +
Sbjct: 245 ACAKLEDLETGE------------------------------------------KVYAFI 262

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
           +  GI++N  + ++L+DMY KC  +D A  +F    + ++ + + M + +   G  REAL
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREAL 322

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSH 395
            +F+ M ++ V+P+ ++  + + +CS 
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 186/395 (47%), Gaps = 23/395 (5%)

Query: 56  QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           QIH  +++ G   D +  + L   +  C       L+ AR++FD++ + N+ +W ++I  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECG-----ELDSARKVFDEMSERNVVSWTSMICG 209

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE- 171
           Y+       +  +F ++V +    PN  T   VI A A+L     G+ ++  +  S  E 
Sbjct: 210 YARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEV 269

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           +DL +S +L+  Y  C  + +A  +F   G  ++   N+M S +V+ G   +A+ ++  M
Sbjct: 270 NDLMVS-ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
               V+PD ++M++ +S+C++ R++ +G+         H   L       +    +++  
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGK-------SCHGYVLRNGFESWDNICNALIDM 381

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
             +    D   +I  +M  + +        S++  Y + G +D A E F T+  +++  W
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSW 437

Query: 352 STMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           +T+I+G        EA+++F  MQ +  V  + VT  ++  AC H G +D  +  +  +E
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE 497

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
              G+   V+  T +VDM  R G  + A+     +
Sbjct: 498 K-NGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 104/189 (55%), Gaps = 15/189 (7%)

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           NEA+ +F  + ++  ++PD++TF   LSACA+  A   G+QIH  + K G   + ++  S
Sbjct: 116 NEAILLFLRM-MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNS 174

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKP 381
           L+  Y +CG LD A +VF  +  R+V  W++MI G+A     ++A+DLF RM ++ +V P
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTP 234

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV--PGVK----HYTCMVDMLGRAGLL 435
           N+VT   V+ AC+    ++ G       E VY  +   G++      + +VDM  +   +
Sbjct: 235 NSVTMVCVISACAKLEDLETG-------EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 436 DEAVEFIEK 444
           D A    ++
Sbjct: 288 DVAKRLFDE 296



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 48/210 (22%)

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSRDV-FVWSTMIAGFAM 360
           H  + KQG+  +    T L+    + G   +L  A EVF   +S    F+++++I G+A 
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS------------------------ 396
            G   EA+ LF RM  + + P+  TF   L AC+ S                        
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171

Query: 397 -----------GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                      G +D  R  F++M         V  +T M+    R     +AV+   +M
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMSE-----RNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 446 ----PIVPGASVWGALLGACKIHENVELAE 471
                + P +     ++ AC   E++E  E
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGE 256


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 327/565 (57%), Gaps = 14/565 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A+E+FD++P  N  +W  +I  Y+ +    ++  + LQ ++ S   P+  +   +  A +
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL-LQELHRSGMLPSLSSLTSIFFACS 430

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +V    G  +H + +K   + + F  N+LI  Y  C ++  A  VF  +  KD+VSWNS
Sbjct: 431 NIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNS 490

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
            ++  VQ    ++A   +  M    +  D+V+   ++SA A           NEA+  F 
Sbjct: 491 FLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQ------SNEAMGAFK 540

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            +     + P+      +L  C  LGA  IG QIH    K G+     +  +LI MY KC
Sbjct: 541 TMFCEHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G  D +  +F  ++ RD+F W+T+I G+A +G GREA+ ++  M+ A V PN VTF  +L
Sbjct: 600 GCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSH+GLVDEG  FF  M   YG+ P  +HY CMVD+LGR G +  A +FI  MPI P 
Sbjct: 659 NACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD 718

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W ALLGACKIH+N E+ + A   L  +EP N G  V+LSNIY+  G W  V+E+RK 
Sbjct: 719 TVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKI 778

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+ KEPGCS  ++  ++H F+ G+  H   +EI + L+E+   LK+ GYVP+   +
Sbjct: 779 MKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFV 838

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  ++EE  +E +L  HSE+LA+AY L++     PI+I+KNLR+CGDCHT  K +S +  
Sbjct: 839 LHDIDEEQ-KESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTK 897

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R+I +RD  RFHHFR G+CSC D+W
Sbjct: 898 RQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 237/518 (45%), Gaps = 55/518 (10%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           LG    +  ARE+FD +P+ ++  WN++I AY  +  P  +     + +Y++    N  T
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA-----RDLYDAISGGNMRT 98

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++    RL   RV +A    V     E +    N++I  Y   GD+ MA  +F  + 
Sbjct: 99  GAILLSGYGRL--GRVLEARR--VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP 154

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +DV SWNSM++G+        A  L+ +M   N+    V+   ++S         +GR 
Sbjct: 155 SRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL----VSWTVMISG--------YGRI 202

Query: 262 PN--EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
            N  +A  IF ++   + + PD+  F S LSA   LG +D+   +     K G + +  +
Sbjct: 203 ENHGKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 320 TTSLIDMYTK-CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
            T+++++Y++    LD A++ F ++  R+ + WSTMIA  +  G    A+ ++ R     
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER---DP 318

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           VK  A   T ++   +  G +D+ R+ F Q+ EP+      V  +  ++    + G+++E
Sbjct: 319 VKSIACR-TALITGLAQCGRIDDARILFEQIPEPI------VVSWNALITGYMQNGMVNE 371

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A E  +KMP     S  G + G    +     +E A   L EL     G L  LS++ + 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAG----YAQNGRSEEALGLLQEL--HRSGMLPSLSSLTSI 425

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGC--SSIEVNGEIHKFLAGESSHPLCKEI-YSKLDEI 554
                N+  L    +V  L  + GC  +S   N  I       + +  C+ + Y++  ++
Sbjct: 426 FFACSNIVALETGTQVHSLAVKVGCQFNSFACNALI-------TMYGKCRNMEYAR--QV 476

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            +R+ +   V   S L  LV + D+ ++A N     L+
Sbjct: 477 FSRMVTKDIVSWNSFLAALV-QNDLLDEARNTFDNMLS 513



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 168/393 (42%), Gaps = 64/393 (16%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           Q +     S +K   N+  L+ +    L+TG   D    + +    +  T S L+ A + 
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT-SVLDTAIKF 282

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ + + N YTW+T+I A S                                        
Sbjct: 283 FESMIERNEYTWSTMIAALSHGG------------------------------------- 305

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R+  AI   V +      +    +LI   A CG +  A  +F  I +  VVSWN++I+G
Sbjct: 306 -RIDAAI--AVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           ++Q G   +A EL+ +M   N     ++   +++  A+      GR   EAL +  EL  
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNT----ISWAGMIAGYAQN-----GR-SEEALGLLQELHR 412

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  + P   +  S+  AC+ + A++ G Q+H+   K G + N +   +LI MY KC N++
Sbjct: 413 SGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A +VF  + ++D+  W++ +A         EA + F  M    +  + V++T ++ A +
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYA 527

Query: 395 HSGLVDEGRMFFNQM--------EPVYGVVPGV 419
           H+   +E    F  M         P+  ++ GV
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGV 560


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 327/565 (57%), Gaps = 14/565 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A+E+FD++P  N  +W  +I  Y+ +    ++  + LQ ++ S   P+  +   +  A +
Sbjct: 372 AKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL-LQELHRSGMLPSLSSLTSIFFACS 430

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +V    G  +H + +K   + + F  N+LI  Y  C ++  A  VF  +  KD+VSWNS
Sbjct: 431 NIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNS 490

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
            ++  VQ    ++A   +  M    +  D+V+   ++SA A           NEA+  F 
Sbjct: 491 FLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQ------SNEAMGAFK 540

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            +     + P+      +L  C  LGA  IG QIH    K G+     +  +LI MY KC
Sbjct: 541 TMFCEHEL-PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G  D +  +F  ++ RD+F W+T+I G+A +G GREA+ ++  M+ A V PN VTF  +L
Sbjct: 600 GCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACSH+GLVDEG  FF  M   YG+ P  +HY CMVD+LGR G +  A +FI  MPI P 
Sbjct: 659 NACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD 718

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W ALLGACKIH+N E+ + A   L  +EP N G  V+LSNIY+  G W  V+E+RK 
Sbjct: 719 TVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKI 778

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+  G+ KEPGCS  ++  ++H F+ G+  H   +EI + L+E+   LK+ GYVP+   +
Sbjct: 779 MKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFV 838

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  ++EE  +E +L  HSE+LA+AY L++     PI+I+KNLR+CGDCHT  K +S +  
Sbjct: 839 LHDIDEEQ-KESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTK 897

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R+I +RD  RFHHFR G+CSC D+W
Sbjct: 898 RQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 237/518 (45%), Gaps = 55/518 (10%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           LG    +  ARE+FD +P+ ++  WN++I AY  +  P  +     + +Y++    N  T
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA-----RDLYDAISGGNMRT 98

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++    RL   RV +A    V     E +    N++I  Y   GD+ MA  +F  + 
Sbjct: 99  GAILLSGYGRL--GRVLEARR--VFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP 154

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +DV SWNSM++G+        A  L+ +M   N+    V+   ++S         +GR 
Sbjct: 155 SRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL----VSWTVMISG--------YGRI 202

Query: 262 PN--EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
            N  +A  IF ++   + + PD+  F S LSA   LG +D+   +     K G + +  +
Sbjct: 203 ENHGKAWDIFCKMH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 320 TTSLIDMYTK-CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
            T+++++Y++    LD A++ F ++  R+ + WSTMIA  +  G    A+ ++ R     
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER---DP 318

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           VK  A   T ++   +  G +D+ R+ F Q+ EP+      V  +  ++    + G+++E
Sbjct: 319 VKSIACR-TALITGLAQCGRIDDARILFEQIPEPI------VVSWNALITGYMQNGMVNE 371

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A E  +KMP     S  G + G    +     +E A   L EL     G L  LS++ + 
Sbjct: 372 AKELFDKMPFRNTISWAGMIAG----YAQNGRSEEALGLLQEL--HRSGMLPSLSSLTSI 425

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGC--SSIEVNGEIHKFLAGESSHPLCKEI-YSKLDEI 554
                N+  L    +V  L  + GC  +S   N  I       + +  C+ + Y++  ++
Sbjct: 426 FFACSNIVALETGTQVHSLAVKVGCQFNSFACNALI-------TMYGKCRNMEYAR--QV 476

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            +R+ +   V   S L  LV + D+ ++A N     L+
Sbjct: 477 FSRMVTKDIVSWNSFLAALV-QNDLLDEARNTFDNMLS 513



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 168/393 (42%), Gaps = 64/393 (16%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           Q +     S +K   N+  L+ +    L+TG   D    + +    +  T S L+ A + 
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT-SVLDTAIKF 282

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ + + N YTW+T+I A S                                        
Sbjct: 283 FESMIERNEYTWSTMIAALSHGG------------------------------------- 305

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R+  AI   V +      +    +LI   A CG +  A  +F  I +  VVSWN++I+G
Sbjct: 306 -RIDAAI--AVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           ++Q G   +A EL+ +M   N     ++   +++  A+      GR   EAL +  EL  
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNT----ISWAGMIAGYAQN-----GR-SEEALGLLQELHR 412

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  + P   +  S+  AC+ + A++ G Q+H+   K G + N +   +LI MY KC N++
Sbjct: 413 SGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNME 471

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A +VF  + ++D+  W++ +A         EA + F  M    +  + V++T ++ A +
Sbjct: 472 YARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYA 527

Query: 395 HSGLVDEGRMFFNQM--------EPVYGVVPGV 419
           H+   +E    F  M         P+  ++ GV
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGV 560


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/673 (34%), Positives = 365/673 (54%), Gaps = 65/673 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +LI        LKQ+H  ++   L  D +  + L        F    Y+  +F     PN
Sbjct: 18  TLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLF--FRQTHYSFLLFSHTQFPN 75

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ +NTLI  + ++    ++  +FL +  +     + FTFP V+KA  R    ++G  +H
Sbjct: 76  IFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNL-HGFTFPLVLKACTRASNRKLGIDLH 134

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            +V+K  F  D+    SL+  Y+  G L  A+ VF  I ++ VV+W ++ SG+   G   
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHR 194

Query: 223 KAIELYREMEMENVKPD--------------------------------------EVTMV 244
           +AI+L+++M    V+PD                                        T+V
Sbjct: 195 EAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLV 254

Query: 245 AVLSACAK------------KRDL----------EFGRWPNEALSIFHELQLSKNVNPDE 282
            + + C K            ++D+              +P E +  F ++ L +N+ PD+
Sbjct: 255 NLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQM-LQENLKPDQ 313

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           F+ V  LS+CA LGA+D+G    + + +     N ++  +LIDMY KCG + +  EVF  
Sbjct: 314 FSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +K +D+ + +  I+G A  G  + +  +F + ++  + P+  TF  +LC C H+GL+ +G
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
             FFN +  VY +   V+HY CMVD+ GRAG+LD+A   I  MP+ P A VWGALL  C+
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           + ++ +LAE     L+ LEP N G  V LSNIY+ +G+WD  +E+R  M   G+KK PG 
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGY 553

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IE+ G +H+FLA + SHPL  +IY+KL+++   ++  G+VP    +   VE+E+ +E+
Sbjct: 554 SWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEE-KER 612

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSE+LA+A+GLIS +  Q IR+VKNLRVCGDCH V KLISK+  REI++RD  RFH
Sbjct: 613 VLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672

Query: 643 HFRGGNCSCMDYW 655
            F  G+CSC DYW
Sbjct: 673 CFTNGSCSCNDYW 685


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 368/682 (53%), Gaps = 74/682 (10%)

Query: 40   PVFSLIKQCKNIKQLK---QIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYARE 93
             V SL+  C ++  L    Q+H+  ++ G+  D     S   L++ CA      +E A +
Sbjct: 364  TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA-----DVETAHK 418

Query: 94   MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
             F      N+  WN ++ AY        SF IF Q+       PN+FT+P +++    L 
Sbjct: 419  FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG-MIPNQFTYPSILRTCTSLG 477

Query: 154  QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
               +G+ IH  VIK+ F+ ++++ + LI  YA  G LA+A  +   + + DVVSW +MI+
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 214  GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-------------FG- 259
            G+VQ   F +A++L+ EME   ++ D +   + +SACA  R L              FG 
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 260  --RWPNEALSIFHE--------LQLSKNVNPDEFTFVSVLSACAQLG----AMDI----- 300
                 N  +S++          L   K  + +  ++ S++S  AQ G    A+ +     
Sbjct: 598  DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657

Query: 301  --------------------------GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                                      G QIH+ + K G      ++ SLI +Y K G++ 
Sbjct: 658  RTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 335  KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
             A   F+ +  R+V  W+ MI G++ +GCG EAL LF  M+   + PN VTF  VL ACS
Sbjct: 718  DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 395  HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            H GLV EG  +F  M  ++ +VP  +HY C+VD+LGRAG LD A+E+I++MPI   A +W
Sbjct: 778  HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 455  GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
              LL AC IH+N+E+ E A  HLLELEPE+    VL+SNIYA + +W +    RK M+  
Sbjct: 838  RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDX 897

Query: 515  GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            G+KKEPG S IEV   +H F AG+  HPL  +IY  +  +  R    GYV +   LL   
Sbjct: 898  GVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLN-- 955

Query: 575  EEEDVQEQAL-NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
            E E  Q+  + ++HSE+LAIA+GL+S+  + PIR++KNLRVC DCH   K +SK+ NR I
Sbjct: 956  ESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSI 1015

Query: 634  LLRDRYRFHHFRGGNCSCMDYW 655
            ++RD +RFHHF GG CSC D+W
Sbjct: 1016 IVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 197/412 (47%), Gaps = 47/412 (11%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +KQ+H++    G    P  A+ L    +   +  +E A+++F+ I   ++ TW  +I   
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY--IESAKKVFNCICMKDIVTWVAMISGL 236

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +    ++ ++F  + + S  FP  +    V+ A+ ++  F +G+ +H +VIK  F  +
Sbjct: 237 SQNGLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N L+  Y+    L  A  +F  +  +D VS+NS+ISG VQ GF ++A+EL+ +M+ 
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           + +KPD +T+ ++LSACA                                          
Sbjct: 356 DCLKPDCITVASLLSACAS----------------------------------------- 374

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            +GA+  G+Q+H+   K G+  +  L  SL+D+Y+KC +++ A + F   ++ ++ +W+ 
Sbjct: 375 -VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNV 433

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           M+  +       ++ ++F +MQ   + PN  T+ ++L  C+  G +  G      +    
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT- 492

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           G    V   + ++DM  + G L  A+  + ++P     S W A++     H+
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAMIAGYVQHD 543



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 179/430 (41%), Gaps = 49/430 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +Q+H  +++ G   + Y  + L    AL + S  L  A  +F  +   +  ++N+LI   
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGL---VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGL 337

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                  ++  +F ++  +    P+  T   ++ A A +     G  +H   IK+    D
Sbjct: 338 VQQGFSDRALELFTKMQRDCLK-PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + +  SL+  Y+ C D+  A+  F+    +++V WN M+  + Q      + E++R+M+M
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           E + P++ T  ++L  C                                           
Sbjct: 457 EGMIPNQFTYPSILRTCTS----------------------------------------- 475

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            LGA+ +G QIH  + K G +LN Y+ + LIDMY K G L  AL +   +   DV  W+ 
Sbjct: 476 -LGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+  +    EAL LF  M+   ++ + + F + + AC+    + +G+    Q     
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAA- 593

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G    +     ++ +  R G + EA    EK+      S W +L+         E A   
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQV 652

Query: 474 CSHLLELEPE 483
              +L  E E
Sbjct: 653 FVRMLRTEAE 662



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 146/376 (38%), Gaps = 85/376 (22%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  + KS F+ +  + +SL+  Y   GD   A  VF     + V SWN MI  FV    
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
             +   L+R M  E + P+  T   VL AC                           V  
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKAC---------------------------VGG 172

Query: 281 D-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           D  F +V                Q+H++    G   +  +   LID+Y+K G ++ A +V
Sbjct: 173 DIAFNYVK---------------QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ +  +D+  W  MI+G +  G   EA+ LF  M  +++ P     ++VL A +   L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 400 DEGRM---------FFNQMEPVYGVVP----------------------GVKHYTCMVDM 428
           + G           F ++     G+V                       GV  Y  ++  
Sbjct: 278 ELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISG 336

Query: 429 LGRAGLLDEAVEFIEKMP---IVPGASVWGALLGAC----KIHENVELAEYACSHLLELE 481
           L + G  D A+E   KM    + P      +LL AC     +H+ ++L  +A    +  +
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 482 PENHGALVLLSNIYAK 497
               G+L+   ++Y+K
Sbjct: 397 IILEGSLL---DLYSK 409



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + V  +   ++ +L  C   G++   +++H ++ K G      L  SL+D Y + G+   
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++VF    +R VF W+ MI  F       +   LF RM    + PN  TF  VL AC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV- 170

Query: 396 SGLVDEGRMFFNQMEPV------YGVVPGVKHYTCMVDMLGRAGLLDEA 438
                 G + FN ++ V      YG          ++D+  + G ++ A
Sbjct: 171 -----GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/608 (36%), Positives = 352/608 (57%), Gaps = 52/608 (8%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           ++ LK++H    R GL  +   A+     +T C      +L  +  +FD +    + +WN
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANAFIAAYTRCG-----ALCSSERVFDLMDTKTVSSWN 377

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            L+  Y+ +++P ++  ++LQ+  +S   P+ FT   ++ A +R+     G+ IHG  ++
Sbjct: 378 ALLCGYAQNSDPRKALDLYLQMT-DSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 436

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           +    D FI  SL+  Y  CG    A  +F  +  + +VSWN MI+G+ Q G        
Sbjct: 437 NGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL------- 489

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
                                             P+EA+++F ++ LS  + P E   + 
Sbjct: 490 ----------------------------------PDEAINLFRQM-LSDGIQPYEIAIMC 514

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           V  AC+QL A+ +G ++H    K  +  + ++++S+IDMY K G +  +  +F  ++ +D
Sbjct: 515 VCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD 574

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+ +IAG+ ++G G+EAL+LF +M    +KP+  TFT +L ACSH+GLV++G  +FN
Sbjct: 575 VASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFN 634

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
           QM  ++ + P ++HYTC+VDMLGRAG +D+A+  IE+MP  P + +W +LL +C+IH N+
Sbjct: 635 QMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNL 694

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
            L E   + LLELEPE     VL+SN++A +GKWD+V  +R  M+  GL+K+ GCS IEV
Sbjct: 695 GLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
            G++H FL G+   P  +E+      +  ++ S GY P+   +L  +EEED +   L  H
Sbjct: 755 GGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEED-KIGILRGH 813

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LAI++GL++     P+R+ KNLR+CGDCH  AK ISK+ NR+I++RD  RFHHFR G
Sbjct: 814 SEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDG 873

Query: 648 NCSCMDYW 655
            CSC DYW
Sbjct: 874 ICSCGDYW 881



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 150/307 (48%), Gaps = 46/307 (14%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           +R +FD++ + NL+ WN ++ AY+ +     +  IF +L+  + + P+ FT P VIKA A
Sbjct: 53  SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 112

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L+   +GQ IHGM  K     D+F+ N+LI  Y  CG +  A  VF  + ++++VSWNS
Sbjct: 113 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNS 172

Query: 211 MISGFVQGGFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           +I GF + GF +++   +REM +  E+  PD  T+V VL  CA + D+E           
Sbjct: 173 IICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIE----------- 221

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                           G+ +H    K G+     +  SLIDMY+
Sbjct: 222 -------------------------------KGMAVHGLAVKLGLNEELMVNNSLIDMYS 250

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ--EAKVKPNAVTF 386
           KC  L +A  +F     +++  W++MI G+A          L  +MQ  +AK+K +  T 
Sbjct: 251 KCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTI 310

Query: 387 TNVLCAC 393
            NVL  C
Sbjct: 311 LNVLPVC 317



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 171/370 (46%), Gaps = 54/370 (14%)

Query: 35  QHHPHPVFSL---IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           +H P   F+L   IK C  +  L   + IH    +  L  D +  + L      G    +
Sbjct: 96  EHKPDN-FTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIA--MYGKCGLV 152

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ-LVYNSPYFPNEFTFPFVIK 147
           E A ++F+ +P+ NL +WN++I  +S +    +SF  F + LV    + P+  T   V+ 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             A       G A+HG+ +K    ++L ++NSLI  Y+ C  L+ A  +F    KK++VS
Sbjct: 213 VCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMEN--VKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           WNSMI G+ +     +   L ++M+ E+  +K DE T++ VL  C ++            
Sbjct: 273 WNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLER------------ 320

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                ELQ  K                          ++H    + G++ N  +  + I 
Sbjct: 321 ----SELQSLK--------------------------ELHGYSWRHGLQSNELVANAFIA 350

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
            YT+CG L  +  VF  + ++ V  W+ ++ G+A     R+ALDL+ +M ++ + P+  T
Sbjct: 351 AYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFT 410

Query: 386 FTNVLCACSH 395
             ++L ACS 
Sbjct: 411 IGSLLLACSR 420



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 46/326 (14%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           +++A  +     VG+ +H MV  S+ F +D  ++  +I  Y++CG  + +  VF  + +K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           ++  WN+++S + +   FE                                         
Sbjct: 64  NLFQWNAIVSAYTRNELFE----------------------------------------- 82

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           +A+SIF EL       PD FT   V+ ACA L  + +G  IH    K  +  + ++  +L
Sbjct: 83  DAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNAL 142

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM--QEAKVKP 381
           I MY KCG +++A++VF  +  R++  W+++I GF+  G  +E+ + F  M   E    P
Sbjct: 143 IAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVP 202

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +  T   VL  C+    +++G M  + +    G+   +     ++DM  +   L EA   
Sbjct: 203 DVATLVTVLPVCAGEEDIEKG-MAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLL 261

Query: 442 IEKMPIVPGASVWGALLGACKIHENV 467
            +K       S W +++G     E+V
Sbjct: 262 FDKNDKKNIVS-WNSMIGGYAREEDV 286



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +L AC Q   +++G ++H  +       N + L T +I MY+ CG+   +  VF  ++ +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEG-RM 404
           ++F W+ +++ +       +A+ +FS +    + KP+  T   V+ AC  +GL+D G   
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             + M     +V  V     ++ M G+ GL++EAV+  E MP     S W +++  C   
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVS-WNSII--CGFS 178

Query: 465 ENVELAE 471
           EN  L E
Sbjct: 179 ENGFLQE 185


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/619 (36%), Positives = 356/619 (57%), Gaps = 55/619 (8%)

Query: 43  SLIKQCK--NIKQL-KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S +K C     K+L +Q+H+ +++     D ++A  L   ++ C +     ++ AR  +D
Sbjct: 289 SALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM-----MDDARRAYD 343

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P+ ++  WN LI  YS   + + +  +F ++      F N+ T   V+K+ A L   +
Sbjct: 344 SMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF-NQTTLSTVLKSVASLQAIK 402

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           V + IH + IKS    D ++ NSL+  Y  C  +  A  +F     +D+V++ SMI+ + 
Sbjct: 403 VCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYS 462

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E                                         EAL ++ ++Q   
Sbjct: 463 QYGDGE-----------------------------------------EALKLYLQMQ-DA 480

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           ++ PD F   S+L+ACA L A + G Q+H    K G   + + + SL++MY KCG+++ A
Sbjct: 481 DIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDA 540

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              F  + +R +  WS MI G+A +G G+EAL LF++M    V PN +T  +VLCAC+H+
Sbjct: 541 DRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHA 600

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+ +F +ME ++G+ P  +HY CM+D+LGR+G L+EAVE +  +P      VWGA
Sbjct: 601 GLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGA 660

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA +IH+N+EL + A   L +LEPE  G  VLL+NIYA  G W+NV+++RK M+ S +
Sbjct: 661 LLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKV 720

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPG S IE+  +++ F+ G+ SH    EIY+KLD++   L   GY       +  V++
Sbjct: 721 KKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDK 780

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +E+ L  HSE+LA+A+GLI+  P  PIR+ KNLR+C DCHT  K + K+ +REI++R
Sbjct: 781 SE-KEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVR 839

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G+CSC DYW
Sbjct: 840 DINRFHHFKDGSCSCGDYW 858



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 195/406 (48%), Gaps = 53/406 (13%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           ++H  +++ G   DP   + L T           YAR++ D+  + ++ +W++L+  Y  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVT--LYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    ++ ++F ++        NEFTFP V+KA +      +G+ +HGM + + FE D F
Sbjct: 60  NGFVEEALLVFNEMCLLGVK-CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGF 118

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           ++N+L+  YA CG L  +  +F  I +++VVSWN++ S +VQ     +A+ L++EM    
Sbjct: 119 VANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
           + P+E ++  +L+ACA  ++ + GR                                   
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGR----------------------------------- 203

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
                  +IH  M K G+ L+ +   +L+DMY+K G ++ A+ VF  +   DV  W+ +I
Sbjct: 204 -------KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAII 256

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN---QMEPV 412
           AG  ++ C   AL L   M+ +  +PN  T ++ L AC+  G  + GR   +   +M+  
Sbjct: 257 AGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAH 316

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             +   V     +VDM  +  ++D+A    + MP       W AL+
Sbjct: 317 SDLFAAVG----LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALI 357



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 187/408 (45%), Gaps = 55/408 (13%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++K C   +++   +++H   + TG   D + A+ L   +  C L     L+ +R +F 
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL-----LDDSRRLFG 141

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I + N+ +WN L   Y  S    ++  +F ++V  S   PNEF+   ++ A A L +  
Sbjct: 142 GIVERNVVSWNALFSCYVQSELCGEAVGLFKEMV-RSGIMPNEFSISIILNACAGLQEGD 200

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ IHG+++K   + D F +N+L+  Y+  G++  A  VF  I   DVVSWN++I+G V
Sbjct: 201 LGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV 260

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
                + A+ L  EM+    +P+  T+ + L ACA                         
Sbjct: 261 LHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA------------------------- 295

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                             +G  ++G Q+H+ + K     + +    L+DMY+KC  +D A
Sbjct: 296 -----------------AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDA 338

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              + ++  +D+  W+ +I+G++  G   +A+ LFS+M    +  N  T + VL + +  
Sbjct: 339 RRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASL 398

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
             +   +   + +    G+         ++D  G+   +DEA +  E+
Sbjct: 399 QAIKVCKQ-IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE 445



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 55/335 (16%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           N TTL+           V   +   + IK  KQIHT  +++G++ D Y  + L      G
Sbjct: 384 NQTTLST----------VLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD--TYG 431

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
             + ++ A ++F++    +L  + ++I AYS   +  ++  ++LQ+  ++   P+ F   
Sbjct: 432 KCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQM-QDADIKPDPFICS 490

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            ++ A A L  +  G+ +H   IK  F  D+F SNSL++ YA CG +  A   F  I  +
Sbjct: 491 SLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNR 550

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            +VSW++MI G+ Q G  ++A+ L+ +M  + V P+ +T+V+VL AC            N
Sbjct: 551 GIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCAC------NHAGLVN 604

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           E    F ++++   + P +  +     AC                              +
Sbjct: 605 EGKQYFEKMEVMFGIKPTQEHY-----AC------------------------------M 629

Query: 324 IDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAG 357
           ID+  + G L++A+E+ +++    D FVW  ++  
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGA 664



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 138/310 (44%), Gaps = 44/310 (14%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  +IK  F  D  + N L+  Y+ C     A  +     + DVVSW+S++SG+VQ GF
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E                                         EAL +F+E+ L   V  
Sbjct: 63  VE-----------------------------------------EALLVFNEMCL-LGVKC 80

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           +EFTF SVL AC+    +++G ++H      G + + ++  +L+ MY KCG LD +  +F
Sbjct: 81  NEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  R+V  W+ + + +       EA+ LF  M  + + PN  + + +L AC+     D
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            GR     M  + G+         +VDM  +AG ++ AV   + +   P    W A++  
Sbjct: 201 LGRKIHGLMLKM-GLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAG 258

Query: 461 CKIHENVELA 470
           C +H+  +LA
Sbjct: 259 CVLHDCNDLA 268



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
           +++HA + K G   +  L   L+ +Y+KC     A ++       DV  WS++++G+   
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G   EAL +F+ M    VK N  TF +VL ACS    ++ GR   + M  V G       
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRK-VHGMAVVTGFESDGFV 119

Query: 422 YTCMVDMLGRAGLLDEA 438
              +V M  + GLLD++
Sbjct: 120 ANTLVVMYAKCGLLDDS 136


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 345/620 (55%), Gaps = 53/620 (8%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + S++  C + + L   +++H   LR GL      S + L   C  G   ++E AR +FD
Sbjct: 122 LVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCG---AVEAARAVFD 178

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +P  N  +WN +I  Y+ +    ++  +F ++V       +       ++A   L    
Sbjct: 179 CMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA-ALQACGELGYLD 237

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGF 215
             + +H ++++     ++ ++N+LI  YA C    +A  VF  +G KK  +SWN+MI GF
Sbjct: 238 EVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGF 297

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q                              + C           P +A  +F  +QL 
Sbjct: 298 TQ------------------------------NEC-----------PEDAERLFARMQL- 315

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           +NV PD FT VSV+ A A +        IH    +  +  + Y+ T+LIDMY+KCG +  
Sbjct: 316 ENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F + + R V  W+ MI G+  +G G+ A++LF  M+     PN  TF +VL ACSH
Sbjct: 376 ARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSH 435

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLVDEG+ +F  M+  YG+ PG++HY  MVD+LGRAG LDEA  FI+ MPI PG SV+G
Sbjct: 436 AGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYG 495

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           A+LGACK+H+NVELAE +   + EL PE     VLL+NIYA    W +V+ +R  M   G
Sbjct: 496 AMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKG 555

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           L+K PG S I++  E+H F +G ++H   K+IY++L +++  +K  GYVP+   +  +  
Sbjct: 556 LQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSIHDV-- 613

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E+DV+ Q LN HSE+LAIAYGLI   P   I+I KNLRVC DCH   KLIS L  REI++
Sbjct: 614 EDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIM 673

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC DYW
Sbjct: 674 RDIQRFHHFKDGKCSCGDYW 693



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 139/346 (40%), Gaps = 43/346 (12%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++K  A       G+A+H  +       +   S +L + Y  C   A A  VF  +
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             +D V+WN++++G+ + G    A+E    M+ E                      E G 
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGE----------------------EGGE 115

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                              PD  T VSVL ACA   A+    ++HA   + G+     ++
Sbjct: 116 ------------------RPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVS 157

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T+++D Y KCG ++ A  VF  +  R+   W+ MI G+A  G   EA+ LF RM +  V 
Sbjct: 158 TAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVD 217

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
               +    L AC   G +DE R     +  V G+   V     ++    +    D A +
Sbjct: 218 VTDASVLAALQACGELGYLDEVRRVHELLVRV-GLSSNVSVTNALITTYAKCKRADLAAQ 276

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAE--YACSHLLELEPEN 484
              ++        W A++     +E  E AE  +A   L  + P++
Sbjct: 277 VFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDS 322


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/667 (35%), Positives = 360/667 (53%), Gaps = 79/667 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           + +H   +  G   D + AS   KL+   + G     + AR++FD +P P+   WNTL+ 
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSRG-----DDARKVFDTVPSPDTILWNTLLA 188

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
               S    ++   F+++V      P+  T    ++AAA      +G+ +HG  +K    
Sbjct: 189 GLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLA 244

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           +   +   L+  Y+ CGD+  A  +F  +   D+V++N++ISG+   G  E ++EL++E+
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304

Query: 232 EMENVKP-----------------------------------DEVTMVAVLSACAKKRDL 256
                +P                                   D +   A+ +   +  D+
Sbjct: 305 TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 257 EFGR-------------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
           E  R             W               A+++F  +Q   NV P+  T  S LSA
Sbjct: 365 ESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQ-ELNVQPNPITISSTLSA 423

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CA LGA+ +G  +H  + K+ ++LN Y+ T+LIDMY KCG++ +A  +F  + +++V  W
Sbjct: 424 CAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSW 483

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI+G+ ++G G EAL L+  M +A++ P + TF +V+ ACSH GLVDEG+  F  M  
Sbjct: 484 NAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTN 543

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHENVE 468
            Y + PG++H TCMVD+LGRAG L+EA+E I + P   I PG  VWGALLGAC +H+N +
Sbjct: 544 EYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPG--VWGALLGACMVHKNSD 601

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LA+ A   L EL+ EN G  VLLSN+Y     +   + +R+  +   L K PGC+ IE+ 
Sbjct: 602 LAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIG 661

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
              H F+AG+  HP  + IYS L+ + A++   GY P     L  VEEE+ +E  + +HS
Sbjct: 662 DRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEE-KEHMVKVHS 720

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           E+LAIA+GL+S EP   IRI+KNLRVC DCH   K ISK+  R I++RD  RFHHFR G 
Sbjct: 721 EKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGV 780

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 781 CSCGDYW 787


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 353/629 (56%), Gaps = 46/629 (7%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTG-LFFDPYSASKL---FTPCALGTFSSLEYARE 93
           + S++  C ++++L   K+IH  +LR   L  + +  S L   +  C       +E  R 
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC-----RQVESGRR 354

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +FD I    +  WN +I  Y+ +    ++ ++F++++  +   PN  T   V+ A     
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   ++IHG  +K  F++D ++ N+L+  Y+  G + ++  +F  +  +D VSWN+MI+
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 214 GFVQGGFFEKAIELYREME-MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           G+V  G +  A+ L  EM+ MEN K  +            K                   
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK------------------- 515

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                  P+  T ++VL  CA L A+  G +IHA   +  +  +  + ++L+DMY KCG 
Sbjct: 516 -------PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGC 568

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-----QEAKVKPNAVTFT 387
           L+ +  VF+ + +++V  W+ +I    M+G G EAL+LF  M     +  + KPN VTF 
Sbjct: 569 LNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFI 628

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            V  ACSHSGL+ EG   F +M+  +GV P   HY C+VD+LGRAG L+EA E +  MP 
Sbjct: 629 TVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPA 688

Query: 448 -VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
                  W +LLGAC+IH+NVEL E A  +LL LEP      VLLSNIY+  G W+   E
Sbjct: 689 EFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAME 748

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK+MR  G+KKEPGCS IE   E+HKF+AG+ SHP  ++++  L+ +  +++  GYVP+
Sbjct: 749 VRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPD 808

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +L  V +ED +E  L  HSE+LAIA+G+++  P   IR+ KNLRVC DCH   K IS
Sbjct: 809 TSCVLHNV-DEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFIS 867

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 868 KIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 194/441 (43%), Gaps = 78/441 (17%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  +  +W   +R+ + S +  ++   ++++   S   P+ F FP V+KA + L   + G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 159 QAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           + IH   +K  +    + ++N+L++ Y  CG +     VF  I  +D VSWNS I+   +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
              +E+A+E +R M+MEN++    T+V+V  AC+              L + H L+L K 
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSN-------------LGVMHGLRLGK- 217

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                    Q+H    + G +   +   +L+ MY K G +D + 
Sbjct: 218 -------------------------QLHGYSLRVGDQ-KTFTNNALMAMYAKLGRVDDSK 251

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F +   RD+  W+TMI+ F+      EAL  F  M    V+ + VT  +VL ACSH  
Sbjct: 252 ALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLE 311

Query: 398 LVDEGR------------------------MFFN--QMEP---VYGVVPG--VKHYTCMV 426
            +D G+                        M+ N  Q+E    V+  + G  ++ +  M+
Sbjct: 312 RLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMI 371

Query: 427 DMLGRAGLLDEA----VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE- 481
               R GL ++A    +E I+   ++P  +   +++ AC   E     E    + ++L  
Sbjct: 372 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGF 431

Query: 482 PENHGALVLLSNIYAKTGKWD 502
            E+      L ++Y++ GK D
Sbjct: 432 KEDRYVQNALMDMYSRMGKMD 452



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 186/433 (42%), Gaps = 72/433 (16%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFD 96
           V   +   +++K  +QIH   ++ G     Y +S +     L    G    +    ++FD
Sbjct: 98  VLKAVSGLQDLKTGEQIHAAAVKFG-----YGSSSVTVANTLVNMYGKCGGIGDVCKVFD 152

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV--- 153
           +I   +  +WN+ I A     +  Q+   F  +   +    + FT   V  A + L    
Sbjct: 153 RITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMEL-SSFTLVSVALACSNLGVMH 211

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             R+G+ +HG  ++   +   F +N+L+  YA  G +  +  +F     +D+VSWN+MIS
Sbjct: 212 GLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMIS 270

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            F Q   F +A+  +R M +E V+ D VT+ +VL AC                       
Sbjct: 271 SFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPAC----------------------- 307

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-MKKQGIKLNCYLTTSLIDMYTKCGN 332
                              + L  +D+G +IHA  ++   +  N ++ ++L+DMY  C  
Sbjct: 308 -------------------SHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ 348

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLC 391
           ++    VF  +  R + +W+ MI+G+A  G   +AL LF  M + A + PN  T  +V+ 
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408

Query: 392 ACSHSGLVDEGRMFFNQMEPVYG--VVPGVKH----YTCMVDMLGRAGLLDEAVEFIEKM 445
           AC H          F+  E ++G  V  G K        ++DM  R G +D +    + M
Sbjct: 409 ACVHCEA-------FSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSM 461

Query: 446 PIVPGASVWGALL 458
            +    S W  ++
Sbjct: 462 EVRDRVS-WNTMI 473


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 365/621 (58%), Gaps = 27/621 (4%)

Query: 45   IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS----LEYAREMFDQ 97
            +K C  +  +    +IH  +++ G   D Y        CAL  F      LE A ++F +
Sbjct: 530  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVY------LRCALMNFYGRCWGLEKANQVFHE 583

Query: 98   IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF-R 156
            +P P    WN  I   +  +E +Q  +   + +  S       T   V++A+   + F  
Sbjct: 584  MPNPEALLWNEAI-ILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLN 642

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            +G+  HG V+++ F+ D+++  SLI  Y     L  A  VF  +  +++ +WNS++SG+ 
Sbjct: 643  MGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYS 702

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP--NEALSIFHELQL 274
              G FE A+ L  +ME E +KPD VT   ++S         +  W    EAL+ F ++Q 
Sbjct: 703  FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISG--------YAMWGCGKEALAFFAQMQ- 753

Query: 275  SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
             + V P+  +   +L ACA L  +  G +IH    + G   + ++ T+LIDMY+K  +L 
Sbjct: 754  QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 813

Query: 335  KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
             A +VF  ++++ +  W+ MI GFA++G G+EA+ +F+ MQ+  V P+A+TFT +L AC 
Sbjct: 814  NAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 873

Query: 395  HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            +SGL+ EG  +F+ M   Y +VP ++HY CMVD+LGRAG LDEA + I  MP+ P A++W
Sbjct: 874  NSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIW 933

Query: 455  GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            GALLG+C+IH+N++ AE A  +L +LEP N    +L+ N+Y+   +W+++  LR+ M  +
Sbjct: 934  GALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAA 993

Query: 515  GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            G++     S I++N  +H F + E  HP   +IY +L ++V+ +K  GYVP+ + + Q +
Sbjct: 994  GVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNM 1053

Query: 575  EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            +E + Q+  L+ H+E+LAI YGLI ++  +PIR++KN R+C DCH+ AK IS +  RE+ 
Sbjct: 1054 DEVEKQKILLS-HTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELF 1112

Query: 635  LRDRYRFHHFRGGNCSCMDYW 655
            LRD  RFHHFR G CSC D+W
Sbjct: 1113 LRDGVRFHHFREGKCSCNDFW 1133



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 183/388 (47%), Gaps = 45/388 (11%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +K +H QM++    ++P +A+K      LG       A   +  +P+ N   WN+ +  +
Sbjct: 439 IKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSFVEEF 497

Query: 114 SSSAEPIQSFM-IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
            SSA  +   + +F +L      F +E  +   +K   R++   +G  IHG +IK  F+ 
Sbjct: 498 KSSAGSLHIVLEVFKELHGKGVVFDSE-VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDL 556

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+++  +L++FY  C  L  A  VF  +   + + WN  I   +Q    +K +EL+R+M+
Sbjct: 557 DVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQ 616

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
              +K +  T+V VL A                                         + 
Sbjct: 617 FSFLKAETATIVRVLQA-----------------------------------------SI 635

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           ++LG +++G + H  + + G   + Y+ TSLIDMY K  +L  A  VF  +K+R++F W+
Sbjct: 636 SELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWN 695

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           ++++G++  G   +AL L ++M++  +KP+ VT+  ++   +  G   E   FF QM+  
Sbjct: 696 SLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQ- 754

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            GV+P     TC++       LL +  E
Sbjct: 755 EGVMPNSASITCLLRACASLSLLQKGKE 782


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 354/619 (57%), Gaps = 34/619 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFD 96
           S +  C  +  L   KQ+H Q++R     DPY AS   +L+  C  G F   + A+ +F 
Sbjct: 296 SSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC--GCF---KEAKRVFS 350

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +   N  +W  LI  +       +S  +F Q+        ++F    +I      +   
Sbjct: 351 SLRDRNSVSWTVLIGGFLQYGCFSESVELFNQM-RAELMAVDQFALATLISGCCNTMDIC 409

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G  +H + +KS     + +SNSLI  YA CG+L  A  +F  + ++D+VSW  MI+ + 
Sbjct: 410 LGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYS 469

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G   KA E + +M   NV    +T  A+L A  +    E G      L ++ ++   K
Sbjct: 470 QVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEEDG------LKMYSDMLTEK 519

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           +V PD  T+V++   CA +GA  +G QI     K G+ L+  +  ++I MY+KCG + +A
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            + F  +  +D+  W+ MI G++ +G G++A+++F  +     KP+ +++  VL  CSHS
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+ +F+ M+  + + PG++H++CMVD+LGRAG L EA   I++MP+ P A VWGA
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL ACK H N +LAE A  HL +L+    G  +LL+ +YA  GK D+ +++RK MR  G+
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGI 759

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG S +EVN  +H F A + SHP    I  KLDE++ ++   GYV   S   ++   
Sbjct: 760 KKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTESPRSEI--- 816

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
                     HSE+LA+A+G++S+    PI I+KNLR+C DCHTV KLIS + +RE ++R
Sbjct: 817 ---------HHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIR 867

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+GG+CSCMDYW
Sbjct: 868 DGVRFHHFKGGSCSCMDYW 886



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 192/406 (47%), Gaps = 42/406 (10%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
             SL  A E+F ++P  ++ +WNT++  Y  S + + +  IF+ +       PN FTF  
Sbjct: 105 LGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGC 164

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+K+   L    V   + G++ K   +DD  +  +L+     CG +  A   F  I    
Sbjct: 165 VMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPT 224

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           ++  NSM+ G+ +    + A+E+++ M   +V    V+   V+SA +K      GR   E
Sbjct: 225 IICRNSMLVGYAKSHGVDHALEIFKSMPERDV----VSWNMVISALSKS-----GR-VRE 274

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +  ++   K V PD  T+ S L+ACA+L +++ G Q+H ++ +    ++ Y+ ++++
Sbjct: 275 ALDMVVDMH-GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMV 333

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           ++Y KCG   +A  VF +++ R+   W+ +I GF  YGC  E+++LF++M+   +  +  
Sbjct: 334 ELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQF 393

Query: 385 TFTNVLCACS-----------HSGLVDEGR----MFFNQMEPVYGVVPGVKH-------- 421
               ++  C            HS  +  G     +  N +  +Y     +++        
Sbjct: 394 ALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFM 453

Query: 422 -------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                  +T M+    + G + +A EF + M        W A+LGA
Sbjct: 454 AERDIVSWTGMITAYSQVGNIAKAREFFDDMS-TRNVITWNAMLGA 498



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 175/381 (45%), Gaps = 21/381 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E+F  +P+ ++ +WN +I A S S    ++  + + + +     P+  T+   + 
Sbjct: 241 VDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDM-HGKGVRPDSTTYTSSLT 299

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL     G+ +H  VI++    D +++++++  YA CG    A  VF  +  ++ VS
Sbjct: 300 ACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS 359

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I GF+Q G F +++EL+ +M  E +  D+  +  ++S C    D+  G       S
Sbjct: 360 WTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLG-------S 412

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L            S++S  A+ G +     I   M ++ I       T +I  Y
Sbjct: 413 QLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDI----VSWTGMITAY 468

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTF 386
           ++ GN+ KA E F  + +R+V  W+ M+  +  +G   + L ++S M  E  V P+ VT+
Sbjct: 469 SQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE---AVEFIE 443
             +   C+  G    G         V G++        ++ M  + G + E   A +F+ 
Sbjct: 529 VTLFRGCADIGANKLGDQIIGHTVKV-GLILDTSVVNAVITMYSKCGRISEARKAFDFLS 587

Query: 444 KMPIVPGASVWGALLGACKIH 464
           +  +V     W A++     H
Sbjct: 588 RKDLVS----WNAMITGYSQH 604



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 48/337 (14%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNSMISGFV 216
            + +H  +I       +F+ N+L+H Y  CG L+ A  +    I + +V++ N M++G+ 
Sbjct: 44  ARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYA 103

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G    A+EL+  M   +V      M     +         G++ N AL IF  ++ + 
Sbjct: 104 KLGSLSDAVELFGRMPTRDVASWNTIMSGYYQS---------GQFLN-ALDIFVSMRQTG 153

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG----- 331
           +  P+ FTF  V+ +C  LG  ++ +Q+   + K   + +  + T+L+DM  +CG     
Sbjct: 154 DSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFA 213

Query: 332 --------------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
                                      +D ALE+F ++  RDV  W+ +I+  +  G  R
Sbjct: 214 SKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVR 273

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--T 423
           EALD+   M    V+P++ T+T+ L AC+    ++ G+    Q   V   +P +  Y  +
Sbjct: 274 EALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQ---VIRNLPHIDPYVAS 330

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            MV++  + G   EA      +      S W  L+G 
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVS-WTVLIGG 366



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 48/195 (24%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC------------- 330
                L +C    A+     +H+++   G+    +L  +L+  Y  C             
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 331 -------------------GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                              G+L  A+E+F  + +RDV  W+T+++G+   G    ALD+F
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 372 SRM-QEAKVKPNAVTFTNVLCACSHSG-------LVDEGRMFFNQMEPVYGVVPGVKHYT 423
             M Q     PNA TF  V+ +C   G       L+     F +Q +P           T
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDP--------DVQT 198

Query: 424 CMVDMLGRAGLLDEA 438
            +VDML R G +D A
Sbjct: 199 ALVDMLVRCGAMDFA 213


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 343/601 (57%), Gaps = 48/601 (7%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           QIH   ++ GL  D    + L    A   F S++Y   +FD++P  ++ +W T+I  ++ 
Sbjct: 404 QIHAYAMKNGLDSDLQVGNSLVDMYA--KFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    ++  +F ++        +      ++ A + L      + IH  +I+     DL 
Sbjct: 462 NGSHSRALELFREVQLEGIDL-DVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLV 519

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + N ++  Y  CG++  A  +F +I  KDVVSW SMIS +V  G                
Sbjct: 520 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGL--------------- 564

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                                      NEAL +FH L     V PD  + VS+LSA A L
Sbjct: 565 --------------------------ANEALELFH-LMKETGVEPDSISLVSILSAAASL 597

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A+  G +IH  + ++G  L   L ++L+DMY +CG L+K+  VF+ ++++D+ +W++MI
Sbjct: 598 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMI 657

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
             + M+GCGR A+DLF RM++  + P+ + F  VL ACSHSGL++EGR F   M+  Y +
Sbjct: 658 NAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQL 717

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
            P  +HY C+VD+LGRA  L+EA +F++ M + P A VW ALLGAC+IH N EL E A  
Sbjct: 718 EPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQ 777

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
            LLE++PEN G  VL+SN+Y+   +W +V  +R  M+ SGLKK PGCS IEV  ++H F+
Sbjct: 778 KLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFM 837

Query: 536 AGESSHPLCKEIYSKLDEIVARL-KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           A + SHP   EIYSKL +I  +L K  GYV     +L   +EE+ + Q L  HSERLAIA
Sbjct: 838 ARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEE-KVQMLYGHSERLAIA 896

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YG+++      +RI KNLRVCGDCH   KLISK + RE+++RD  RFHHF+GG CSC D 
Sbjct: 897 YGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDV 956

Query: 655 W 655
           W
Sbjct: 957 W 957



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 51/376 (13%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           +P+  +++  +      V  L    K + + +Q+H  M+ +   F+    S        G
Sbjct: 71  SPSQFSLDEAYS----SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLV-FMYG 125

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-VYNSPYFPNEFTF 142
               L  A ++FD +P   ++TWN +I AY ++ EP+ S  ++ ++ V   P   +  TF
Sbjct: 126 KCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPL--DACTF 183

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIG 201
           P ++KA   L   R G  +HG+ IK  +   +F++NS++  Y  C DL  A  +F  M  
Sbjct: 184 PCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPE 243

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           K+DVVSWNSMIS +   G   +A+ L+ EM+  ++ P+  T VA L AC           
Sbjct: 244 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC----------- 292

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                              ++ +F+              G+ IHA + K    +N ++  
Sbjct: 293 -------------------EDSSFIKQ------------GMFIHATVLKSSYYINVFVAN 321

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI MY + G + +A  +F+ +   D   W++M++GF   G   EAL  +  M++A  KP
Sbjct: 322 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 381

Query: 382 NAVTFTNVLCACSHSG 397
           + V   +++ A + SG
Sbjct: 382 DLVAVISIIAASARSG 397



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 46/305 (15%)

Query: 158 GQAIHG-MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           GQ +H  M+  ++  + +F+S  L+  Y  CG L  A  +F  +  K + +WN+MI  +V
Sbjct: 97  GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G    ++ELYREM +  +  D  T   +L AC   +D  +                  
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRY------------------ 198

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                   G ++H    K+G     ++  S++ MYTKC +L+ A
Sbjct: 199 ------------------------GAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 234

Query: 337 LEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            ++F  +  + DV  W++MI+ ++  G   EAL LF  MQ+A + PN  TF   L AC  
Sbjct: 235 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 294

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           S  + +G MF +           V     ++ M  R G + EA      M      S W 
Sbjct: 295 SSFIKQG-MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTIS-WN 352

Query: 456 ALLGA 460
           ++L  
Sbjct: 353 SMLSG 357



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 15/240 (6%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYARE 93
           + S++  C  +K    +K+IH+ ++R GL       S L     +    G   +++YA  
Sbjct: 487 ISSILLACSGLKLISSVKEIHSYIIRKGL-------SDLVLQNGIVDVYGECGNVDYAAR 539

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           MF+ I   ++ +W ++I  Y  +    ++  +F  L+  +   P+  +   ++ AAA L 
Sbjct: 540 MFELIEFKDVVSWTSMISCYVHNGLANEALELF-HLMKETGVEPDSISLVSILSAAASLS 598

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             + G+ IHG +I+  F  +  ++++L+  YA CG L  +  VF  I  KD+V W SMI+
Sbjct: 599 ALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMIN 658

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            +   G    AI+L+R ME E++ PD +  VAVL AC+    +  GR   E++   ++L+
Sbjct: 659 AYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLE 718



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 263 NEALSIFHELQLSKNVNPDEFT----FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-C 317
           NEA     +L    N +P +F+    + SVL  C    A+  G Q+HA M       N  
Sbjct: 57  NEAFQSLTDL--FANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSV 114

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L+T L+ MY KCG L  A ++F  +  + +F W+ MI  +   G    +L+L+  M+ +
Sbjct: 115 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 174

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            +  +A TF  +L AC   GL+ + R     + +    G V  V     +V M  +   L
Sbjct: 175 GIPLDACTFPCILKAC---GLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 231

Query: 436 DEAVEFIEKMPIVPGASVWGALLGA 460
           + A +  ++MP       W +++ A
Sbjct: 232 NGARQLFDRMPEKEDVVSWNSMISA 256


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 348/621 (56%), Gaps = 50/621 (8%)

Query: 39  HPVF-SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           H VF S++K C  +  L+    +H  ++R G+  D Y+ + L           ++  R++
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMN--MYSKLLGIDSVRKV 162

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ +P+ ++ ++NT+I  Y+ S    +  +  ++ +  S   P+ FT   V+   +  V 
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSG-MYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVD 221

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ IHG VI+   + D++I +SL+  YA    +  +  VF  + ++D +SWNS+++G
Sbjct: 222 VLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAG 281

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +VQ G +                                         NEAL +F ++ +
Sbjct: 282 YVQNGRY-----------------------------------------NEALRLFRQM-V 299

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  V P    F SV+ ACA L  + +G Q+H  + + G   N ++ ++L+DMY+KCGN+ 
Sbjct: 300 SAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQ 359

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A ++F  +   D   W+ +I G A++G G EA+ LF  M+   VKPN V F  VL ACS
Sbjct: 360 AARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 419

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GLVDE   +FN M  VYG+   ++HY  + D+LGRAG L+EA +FI KM + P  SVW
Sbjct: 420 HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVW 479

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
             LL +C +H+N+ELAE     +  ++ EN GA VL+ N+YA  G+W  +++LR  +R  
Sbjct: 480 STLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKK 539

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GL+K+P CS IE+  + H F++G+ SHP    I   L  ++ +++  GYV + S +L  V
Sbjct: 540 GLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDV 599

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE  +E     HSERLA+A+G+I+ EP   IR+ KN+R+C DCH   K ISK+  REI+
Sbjct: 600 DEEHKRELLFG-HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREII 658

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF  G+CSC DYW
Sbjct: 659 VRDNSRFHHFNRGSCSCGDYW 679



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 208/428 (48%), Gaps = 57/428 (13%)

Query: 43  SLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE---MFD 96
           +LIK    IK   Q KQ+H Q +RT       S S       +  +++L+   E   +F 
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRT------QSLSHTSASIVISIYTNLKLLHEALLVFK 63

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +  P +  W ++IR ++  +   ++   F+++   S   P+   FP V+K+   ++  R
Sbjct: 64  TLESPPVLAWKSVIRCFTDQSLFSRALASFVEM-RASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+++HG +++   + DL+  N+L++ Y+    +     VF ++ +KDVVS+N++I+G+ 
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYA 182

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G +E A+ + REM   ++KPD  T+ +V                   L IF E     
Sbjct: 183 QSGMYEDALRMVREMGTSDLKPDAFTLSSV-------------------LPIFSE----- 218

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                   +V VL           G +IH  + ++GI  + Y+ +SL+DMY K   ++ +
Sbjct: 219 --------YVDVLK----------GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS 260

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  +  RD   W++++AG+   G   EAL LF +M  AKV+P AV F++V+ AC+H 
Sbjct: 261 ERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHL 320

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
             +  G+     +    G    +   + +VDM  + G +  A +  ++M +    S W A
Sbjct: 321 ATLHLGKQLHGYVLR-GGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS-WTA 378

Query: 457 LLGACKIH 464
           ++    +H
Sbjct: 379 IIMGHALH 386


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 353/606 (58%), Gaps = 46/606 (7%)

Query: 50   NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
            N+ Q++Q+H Q    G+  +   A+KL        + +L+ A  +FD +   +  +W+ +
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVX--FYSYYRALDDAYGLFDGMCVRDSVSWSVM 807

Query: 110  IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
            +  ++   + +  F  F +L+      P+ +T PFVI+A   L   ++G+ IH +V K  
Sbjct: 808  VGGFAKVGDYMNCFGTFRELIRCGAR-PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 866

Query: 170  FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
             + D F+  +L+  Y  C ++  A  +F  + ++D+V+W  MI G+ + G          
Sbjct: 867  LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGN--------- 917

Query: 230  EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
                                             NE+L +F +++  + V PD+   V+V+
Sbjct: 918  --------------------------------ANESLVLFDKMR-EEGVVPDKVAMVTVV 944

Query: 290  SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
             ACA+LGAM     I   ++++  +L+  L T++IDM+ KCG ++ A E+F  ++ ++V 
Sbjct: 945  FACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVI 1004

Query: 350  VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
             WS MIA +  +G GR+ALDLF  M  + + PN +T  ++L ACSH+GLV+EG  FF+ M
Sbjct: 1005 SWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXM 1064

Query: 410  EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
               Y V   VKHYTC+VD+LGRAG LDEA++ I  M       +WGA LGAC+ H++V L
Sbjct: 1065 WEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXL 1124

Query: 470  AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            AE A + LLEL+P+N G  +LLSNIYA  G+W++V+++R  M    LKK PG + IEV+ 
Sbjct: 1125 AEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDN 1184

Query: 530  EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
            + H+F  G+++HP  KEIY  L  +  +L+  GYVP+ + +L  V+EE ++   L  HSE
Sbjct: 1185 KSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEE-LKIGILYTHSE 1243

Query: 590  RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
            +LAIA+GLI+     PIRI+KNLRVCGDCHT  KL+S +  R I++RD  RFHHF+ G C
Sbjct: 1244 KLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGAC 1303

Query: 650  SCMDYW 655
            SC DYW
Sbjct: 1304 SCGDYW 1309



 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 330/577 (57%), Gaps = 46/577 (7%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           +P    S +  C+N+ Q++Q+H Q    G+  +   A+KL        + +L+ A  +FD
Sbjct: 61  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIY--FYSYYRALDDAYGLFD 118

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +   +  +W+ ++  ++   + I  F  F +L+      P+ +T PFVI+A   L   +
Sbjct: 119 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGAR-PDNYTLPFVIRACRDLKNLQ 177

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ IH +V K   + D F+  +L+  Y  C ++  A  +F  + ++D+V+W  MI G+ 
Sbjct: 178 MGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 237

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           +                                C K          NE+L +F +++  +
Sbjct: 238 E--------------------------------CGK---------ANESLVLFEKMR-EE 255

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PD+   V+V+ ACA+LGAM     I   ++++  +L+  L T++IDMY KCG ++ A
Sbjct: 256 GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 315

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            E+F  ++ ++V  WS MIA +  +G GR+ALDLF  M  + + P+ +T  ++L ACSH+
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG  FF+ M   Y V   VKHYTC+VD+LGRAG LDEA++ I+ M I     +WGA
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
            LGAC+ H++V LAE A + LLEL+ +N G  VLLSNIYA  G+W++V+++R  M    L
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG + IEV+ + H+F  G+++HP  KEIY  L  +  +L+  GYVP+ + +L  V+E
Sbjct: 496 KKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDE 555

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           E ++   L  HSE+LAIA+GLI+     PIRI+KNLR
Sbjct: 556 E-LKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 347/639 (54%), Gaps = 65/639 (10%)

Query: 23   PNPTTLTVN---NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKL 76
            PNP+ LT+          PHP          ++  +Q+H + L+     +P+   S   L
Sbjct: 521  PNPSHLTIPIALKSASRLPHP----------LRAGEQLHARSLKLPSHTNPHVLTSLLSL 570

Query: 77   FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
            +  C L     L  A+ +FD++P P+   W  LI AY  + +  ++  +      N    
Sbjct: 571  YAKCGL-----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MR 624

Query: 137  PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
            P+ FT   V+ A AR+     G+ +     +      +F++ + +  Y  CG++A A  V
Sbjct: 625  PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 684

Query: 197  FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            F  +  KD V+W +M+ G+   G                                     
Sbjct: 685  FDKMRHKDAVAWGAMVGGYASNGH------------------------------------ 708

Query: 257  EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 P EAL +F  +Q ++ + PD +     LSAC +LGA+D+G Q    +       N
Sbjct: 709  -----PREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 762

Query: 317  CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
              L T+LIDMY KCG+  +A  VF  ++ +D+ VW+ MI G  M G  + A  L  +M++
Sbjct: 763  PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 822

Query: 377  AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            + VK N  TF  +LC+C+H+GL+ +GR +F+ M  +Y + P ++HY CMVD+L RAGLL 
Sbjct: 823  SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 882

Query: 437  EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
            EA + ++ MP+   A + GALLG CKIH N ELAE+    L+ LEP N G  V+LSNIY+
Sbjct: 883  EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 942

Query: 497  KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              G+W++ ++LR  M+  G++K P CS +E  G++H+F  G+ SHPL  +IY KLDE+  
Sbjct: 943  NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 1002

Query: 557  RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
             +K+ GY P    ++  VE+E+ +E  L  HSE+LAIA+ L+   P + IR+ KNLRVC 
Sbjct: 1003 EMKTMGYEPTTEVVMFDVEDEE-KEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCS 1061

Query: 617  DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCHT  KL+S++ +REI++RD  RFH FR G+CSC DYW
Sbjct: 1062 DCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 356/621 (57%), Gaps = 53/621 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMF 95
           H +  L  + ++    +  H Q++R GL  D  +++ L   ++ C+L     ++ AR+ F
Sbjct: 47  HYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSL-----VDSARKKF 101

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           +++P  +L +WNT+I A + +AE  ++  + +Q+      F NEFT   V+   A     
Sbjct: 102 NEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPF-NEFTISSVLCNCAFKCAI 160

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
                +H   IK++ + + F+  +L+H YA C  +  A  +F  + +K+ V+W+SM++G+
Sbjct: 161 LECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGY 220

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           VQ GF E                                         EAL IF   QL 
Sbjct: 221 VQNGFHE-----------------------------------------EALLIFRNAQL- 238

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
              + D F   S +SACA L  +  G Q+HA   K G   N Y+++SLIDMY KCG + +
Sbjct: 239 MGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIRE 298

Query: 336 ALEVFHTV-KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           A  VF  V + R + +W+ MI+GFA +    EA+ LF +MQ+    P+ VT+  VL ACS
Sbjct: 299 AYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACS 358

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H GL +EG+ +F+ M   + + P V HY+CM+D+LGRAGL+ +A + IE+MP    +S+W
Sbjct: 359 HMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMW 418

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           G+LL +CKI+ N+E AE A  +L E+EP N G  +LL+NIYA   KWD V+  RK +R +
Sbjct: 419 GSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRET 478

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            ++KE G S IE+  +IH F  GE +HP   +IY+KLD +V  LK   Y  + S+ L  V
Sbjct: 479 DVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDV 538

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            EE+ ++  L  HSE+LAI +GL+ +    PIRI+KNLR+CGDCHT  KL+SK  +REI+
Sbjct: 539 -EENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREII 597

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF+ G CSC ++W
Sbjct: 598 VRDTNRFHHFKDGFCSCGEFW 618


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 316/520 (60%), Gaps = 11/520 (2%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+   +   +   AR   +     +HG   K        + N LIH Y++CG L  A  V
Sbjct: 73  PDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIHAYSVCGMLFDARKV 132

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F    + D+++WN ++ G+ QG       E + +M       D V+   V++ C    + 
Sbjct: 133 FDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPAR----DSVSWNTVIAWCVANGEH 188

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           E      EA+++F E+  S    PD  T VSV+SA A LGA+  G+  HA + ++ I+++
Sbjct: 189 E------EAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVD 242

Query: 317 CYLTTSLIDMYTKCGNLDKALEVF-HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
             L+++LI+MY+KCG ++ A+ VF ++   R V  W+ M+AGF   GC   AL+LF+RM+
Sbjct: 243 EKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELFTRME 302

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            +   PN +TF  +L ACSH G V+EG  +F +M     + P + HY CMVD+  RAGL 
Sbjct: 303 SSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLF 362

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           ++A E I+ MP+ P A+VW AL+GAC+ + N EL + A   L+E  P +H   VLLSNIY
Sbjct: 363 EKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSNIY 422

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A  G W  V ++RK M   G++K PG SSIE++G IH+F++G+ SH   +++Y  L EI 
Sbjct: 423 ALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLSEIC 482

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
            +LK  GY P+ S +L  +++EDV+E +L LHSERLA+A+GLIS  P  PIRIVKNLRVC
Sbjct: 483 QQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKNLRVC 542

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCH   KL+SK+Y R I++RD  RFH FR G+CSC DYW
Sbjct: 543 GDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 7/191 (3%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           RE F Q+P  +  +WNT+I    ++ E  ++  +F +++ ++   P+  T   VI A A 
Sbjct: 161 REFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAY 220

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNS 210
           L     G   H  V +   E D  +S++LI+ Y+ CG +  A  VF      + V +WN+
Sbjct: 221 LGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNA 280

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M++GF   G  E+A+EL+  ME     P+++T   +L+AC+       G +  E +  F 
Sbjct: 281 MLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSH------GGFVEEGIGYFE 334

Query: 271 ELQLSKNVNPD 281
            +  S ++ PD
Sbjct: 335 RMTNSSSIEPD 345



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 125/308 (40%), Gaps = 55/308 (17%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P+ AL +F  L L    +PD   +   L+ CA+  A     Q+H    K+G   +  +  
Sbjct: 56  PHLALRLFDHL-LRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRN 114

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE--ALDLFSRMQEAKV 379
            LI  Y+ CG L  A +VF      D+  W+ ++ G+A    GR+  AL  F     A+ 
Sbjct: 115 GLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQ---GRDTGALREFFAQMPAR- 170

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
             ++V++  V+  C  +G  +E    F +M         +    C  D            
Sbjct: 171 --DSVSWNTVIAWCVANGEHEEAVAVFREM---------LASNECQPDR----------- 208

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
             +  + ++   +  GAL      H       Y C   +E++ +   AL+   N+Y+K G
Sbjct: 209 --VTLVSVISAIAYLGALAQGLWAH------AYVCRKEIEVDEKLSSALI---NMYSKCG 257

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
             +    +           E  C+   V+   +  LAG ++   C E   +  E+  R++
Sbjct: 258 FIEGAVYV----------FENSCALRSVD-TWNAMLAGFTASG-CSE---RALELFTRME 302

Query: 560 SFGYVPNR 567
           S G+VPN+
Sbjct: 303 SSGFVPNK 310


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/679 (34%), Positives = 364/679 (53%), Gaps = 74/679 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +++K C N K LKQ   IH+ +++ G   + +    L   ++ C L        A  +F 
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI-----DAIGVFK 373

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I +P++  W+ LI       +  +S  +F  L+      PN++T   ++ AA      +
Sbjct: 374 TIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            GQ+IH  V K  FE D+ +SN+L+  Y   G +     ++  +  +D++SWN+ +SG  
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA------------------------- 251
             G +++ + ++  M  E   P+  T +++L +C+                         
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 252 ---------------KKRDLEFGR--------WP------------NEALSIFHELQLSK 276
                          +  D+ F R        W              +AL+ F ++Q  +
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ-QE 611

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V P+EFT    LS C+ L +++ G Q+H+ + K G   + ++ ++L+DMY KCG +++A
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  RD   W+T+I G+A  G G +AL  F  M +  + P+ VTFT +L ACSH 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+  FN M   +G+ P V H  CMVD+LGR G  DE  +FI+KM +   A +W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           +LGA K+H N+ L E A + L EL+PE   + +LLSNI+A  G+WD+V  +R  M   G+
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPGCS +E NG++H F++ + SHP  +EI+ KLDE+   L S  YVP   ++L  V E
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +E  L  HSERLA+ + LIS    + IRI KNLR+C DCH V K IS + N+EI++R
Sbjct: 912 TEKKEN-LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVR 970

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G CSC D+W
Sbjct: 971 DVRRFHHFKNGACSCNDFW 989



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 215/492 (43%), Gaps = 82/492 (16%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++++C + + L   K IH  +++  +  D +    L    A   +S+  YAR +  ++P
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA--YARLVLAKMP 174

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +W  LI+   +      S  +F Q + N    PNEFT    +KA +  +   +G+
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLF-QEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H    K     DLF+ ++L+  YA CG++ +A  +F+ + +++ V+WN +++G+ Q G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
                ++L+  M   +VK +E T+  VL  CA  ++L+ G+                   
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQ------------------- 334

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                   IH+ + K G + N ++   L+DMY+KCG    A+ V
Sbjct: 335 -----------------------VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F T+K  D+ VWS +I      G   E++ LF  M+     PN  T  ++L A +++G +
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 400 DEGRMFF---------------NQMEPVY---GVV-PGVKHYTCMVDM-----------L 429
             G+                  N +  +Y   G V  G K Y  MVD            L
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 430 GRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELE-PENH 485
              G+ D  +     M     +P    + ++LG+C    +V       +H+++ +  +N+
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNN 551

Query: 486 GALVLLSNIYAK 497
                L ++YAK
Sbjct: 552 FVCTALIDMYAK 563



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 2/176 (1%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + S+L  CA   ++ +   IH  + K  I  + +L  SL+++Y KC     A  V   + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RDV  W+ +I G    G   +++ LF  MQ   + PN  T    L ACS    +D G+ 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
              Q   + G++  +   + +VD+  + G ++ A +    MP     + W  LL  
Sbjct: 235 MHAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 347/639 (54%), Gaps = 65/639 (10%)

Query: 23   PNPTTLTVN---NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKL 76
            PNP+ LT+          PHP          ++  +Q+H + L+     +P+   S   L
Sbjct: 545  PNPSHLTIPIALKSASRLPHP----------LRAGEQLHARSLKLPSHTNPHVLTSLLSL 594

Query: 77   FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
            +  C L     L  A+ +FD++P P+   W  LI AY  + +  ++  +      N    
Sbjct: 595  YAKCGL-----LHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG-MR 648

Query: 137  PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
            P+ FT   V+ A AR+     G+ +     +      +F++ + +  Y  CG++A A  V
Sbjct: 649  PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 708

Query: 197  FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            F  +  KD V+W +M+ G+   G                                     
Sbjct: 709  FDKMRHKDAVAWGAMVGGYASNGH------------------------------------ 732

Query: 257  EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 P EAL +F  +Q ++ + PD +     LSAC +LGA+D+G Q    +       N
Sbjct: 733  -----PREALDLFLAMQ-AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 786

Query: 317  CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
              L T+LIDMY KCG+  +A  VF  ++ +D+ VW+ MI G  M G  + A  L  +M++
Sbjct: 787  PVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEK 846

Query: 377  AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            + VK N  TF  +LC+C+H+GL+ +GR +F+ M  +Y + P ++HY CMVD+L RAGLL 
Sbjct: 847  SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQ 906

Query: 437  EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
            EA + ++ MP+   A + GALLG CKIH N ELAE+    L+ LEP N G  V+LSNIY+
Sbjct: 907  EAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYS 966

Query: 497  KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
              G+W++ ++LR  M+  G++K P CS +E  G++H+F  G+ SHPL  +IY KLDE+  
Sbjct: 967  NRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 1026

Query: 557  RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
             +K+ GY P    ++  VE+E+ +E  L  HSE+LAIA+ L+   P + IR+ KNLRVC 
Sbjct: 1027 EMKTMGYEPTTEVVMFDVEDEE-KEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCS 1085

Query: 617  DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            DCHT  KL+S++ +REI++RD  RFH FR G+CSC DYW
Sbjct: 1086 DCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/630 (38%), Positives = 351/630 (55%), Gaps = 61/630 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q   +H   +R  L  +  S SKL     L
Sbjct: 111 PNASTLVA----------LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLL 160

Query: 83  GTF--------SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
           GT          SL YAR +FD +P  N  TW+ LI  +   +   Q+F++F  ++    
Sbjct: 161 GTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 220

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
            F +  +    ++A A L   R+G+ +H ++ KS    DL   NSL+  YA  G +  A 
Sbjct: 221 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            +F  +  KD VS+++++SG+VQ G  E+A  ++++M+                AC    
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ----------------AC---- 320

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                 NV PD  T VS++ AC+ L A+  G   H  +  +G+ 
Sbjct: 321 ----------------------NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLA 358

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               +  +LIDMY KCG +D + +VF+ + SRD+  W+TMIAG+ ++G G+EA  LF  M
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM 418

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                 P+ VTF  +L ACSHSGLV EG+ +F+ M   YG+ P ++HY CMVD+L R G 
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 478

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA EFI+ MP+     VW ALLGAC++++N++L +     + EL PE  G  VLLSNI
Sbjct: 479 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 538

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           Y+  G++D  +E+R   +V G KK PGCS IE+NG +H F+ G+ SHP   EIY +LD I
Sbjct: 539 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNI 598

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +  +K  GY P+ S +LQ +EEE  +E+AL  HSE+LAIAYG++S+   + I + KNLRV
Sbjct: 599 LVGIKKLGYQPDTSFVLQDLEEE-EKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 657

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHF 644
           CGDCHTV K IS +  R I++RD  RFHHF
Sbjct: 658 CGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 177/406 (43%), Gaps = 75/406 (18%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           PN +TFPF +KA + L     G+AIH   I +  + DLF+S +L+  Y  C  L  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIE--LYREMEMENVKPDEVTMVAVLSACAKKR 254
           F  +  +D+V+WN+M++G+   G +  A+   L  +M+M  ++P+  T+VA+L   A++ 
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
            L  G       +  H   +   ++P+                         +  K  + 
Sbjct: 128 ALAQG-------TSVHAYCIRACLHPN-------------------------RNSKSKLT 155

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               L T+L+DMY KCG+L  A  VF  + +R+   WS +I GF +     +A  LF  M
Sbjct: 156 DGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 215

Query: 375 -QEAKVKPNAVTFTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGR 431
             +     +  +  + L AC+    +D  RM    + +    GV   +     ++ M  +
Sbjct: 216 LAQGLCFLSPTSIASALRACAS---LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLG------------------ACKIHENVELAEY- 472
           AGL+D+A+   ++M +    S    + G                  AC +  +       
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 473 --ACSHLLELEPE--NHGALVL------------LSNIYAKTGKWD 502
             ACSHL  L+    +HG++++            L ++YAK G+ D
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 378



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L   V P+ +TF   L AC+ L     G  IH      G++ + +++T+L+DMY KC  L
Sbjct: 2   LRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL 61

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD--LFSRMQEAKVKPNAVTFTNVLC 391
             A  +F T+ +RD+  W+ M+AG+A +G    A+   L  +MQ  +++PNA T   +L 
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 121

Query: 392 ACSHSGLVDEGR---------MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
             +  G + +G                     +  GV   T ++DM  + G L  A    
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 181

Query: 443 EKMPIVPGASVWGALLGA 460
           + MP       W AL+G 
Sbjct: 182 DAMP-ARNEVTWSALIGG 198


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/681 (34%), Positives = 377/681 (55%), Gaps = 70/681 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  +++ C  +  L   KQIH  + R GL  D    + L +  +      LE AR +FD 
Sbjct: 237 IVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKN--GKLELARRVFDS 294

Query: 98  IPQPNLYTWNTLIRAY-----------------SSSAEP-----------------IQSF 123
           +   N  +WN++I +Y                 SS  +P                  +  
Sbjct: 295 MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 354

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           +  LQ +    + PN  +   V++A + L    +G+  HG V+++ F+ D+++  SLI  
Sbjct: 355 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 414

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y     L  A  VF  +  +++ +WNS++SG+   G FE A+ L  +ME E +KPD VT 
Sbjct: 415 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 474

Query: 244 VAVLSA-----CAKK------RDLEFGRWPN------------------EALSIFHELQL 274
             ++S      C K+      +    G  PN                  ++L  F ++Q 
Sbjct: 475 NGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQ- 533

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            + V P+  +   +L ACA L  +  G +IH    + G   + ++ T+LIDMY+K  +L 
Sbjct: 534 QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 593

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A +VF  ++++ +  W+ MI GFA++G G+EA+ +F+ MQ+  V P+A+TFT +L AC 
Sbjct: 594 NAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 653

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +SGL+ EG  +F+ M   Y +VP ++HY CMVD+LGRAG LDEA + I  MP+ P A++W
Sbjct: 654 NSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIW 713

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GALLG+C+IH+N++ AE A  +L +LEP N    +L+ N+Y+   +W+++  LR+ M  +
Sbjct: 714 GALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAA 773

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G++     S I++N  +H F + E  HP   +IY +L ++V+ +K  GYVP+ + + Q +
Sbjct: 774 GVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNM 833

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +E + Q+  L+ H+E+LAI YGLI ++  +PIR++KN R+C DCH+ AK IS +  RE+ 
Sbjct: 834 DEVEKQKILLS-HTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELF 892

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHFR G CSC D+W
Sbjct: 893 LRDGVRFHHFREGKCSCNDFW 913



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 175/392 (44%), Gaps = 46/392 (11%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           ++  +K +H QM++    ++P +A+K      LG       A   +  +P+ N   WN+ 
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSF 103

Query: 110 IRAYSSSAEPIQSFM-IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +  + SSA  +   + +F +L      F +E  +   +K   R++   +G  IHG +IK 
Sbjct: 104 VEEFKSSAGSLHIVLEVFKELHGKGVVFDSE-VYSVALKTCTRVMDIWLGMEIHGCLIKR 162

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F+ D+++  +L++FY  C  L  A  VF  +   + + WN  I   +Q    +K +EL+
Sbjct: 163 GFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELF 222

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
           R+M+   +K +  T+V VL AC K                                    
Sbjct: 223 RKMQFSFLKAETATIVRVLQACGK------------------------------------ 246

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
                 +GA++   QIH  + + G+  +  L   LI MY+K G L+ A  VF ++++R+ 
Sbjct: 247 ------MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNT 300

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W++MI+ +A  G   +A  LF  ++ + +KP+ VT+  +L      G  +E      +
Sbjct: 301 SSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQR 360

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           M+   G  P     T ++  +   G L+   E
Sbjct: 361 MQG-EGFKPNSSSMTSVLQAISELGFLNMGKE 391


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 343/614 (55%), Gaps = 55/614 (8%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE---MFDQIPQP 101
           +  C +I   ++IH ++ ++ L+ D +   +L T      ++ L YA +   +FD +P  
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVT-----CYNKLGYAEDALKLFDDMPHK 103

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L +WN+LI  +S       S   F  + +     PNE T   +I A +  +    G+ I
Sbjct: 104 DLVSWNSLISGFSRCLH--MSLTAFYTMKFEMSVKPNEVTILSMISACSGALD--AGKYI 159

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG  IK     ++ ++NSLI+ Y   GDL  A  +F  I   + VSWNS+I+  V  G  
Sbjct: 160 HGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCA 219

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            + I+ + +M                      R L                     +  D
Sbjct: 220 REGIDYFNKM----------------------RRL--------------------GIEQD 237

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           E T +++L AC  LG   +   IH  M   G      + T+L+D Y K G L  +  VF 
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            V   D   W+ M+AG+A +G GREA+ LF  M    ++P+ VTFT++L ACSHSGLV+E
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ +FN M  VYG+ P V HY+CMVD+LGR GLL++A E I+ MP+ P A VWGALLGAC
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H N+EL +    HL+ +EP +    ++LSN+Y+ +  W + +++R  ++  GLK+ PG
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            SSIE   + H F  G+ SHP  ++IYSKL+E++ +++  GY     ++LQ VEEE V+E
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEE-VKE 536

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
             +N HSE+LAIA+GL+  +  + + I KNLR+CGDCH+ AKLIS +  R I++RD  RF
Sbjct: 537 DMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRF 596

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G CSC DYW
Sbjct: 597 HHFSDGFCSCADYW 610



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 19/262 (7%)

Query: 41  VFSLIKQCKN-IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           + S+I  C   +   K IH   ++ G   +   A+ L      G    L  A  +F+ IP
Sbjct: 142 ILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLIN--MYGKSGDLTSACRLFEAIP 199

Query: 100 QPNLYTWNTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            PN  +WN++I A  ++    E I  F    +L        +E T   +++A   L   +
Sbjct: 200 DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ----DEGTILALLQACLHLGVGK 255

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + ++IHG++  + F   + I+ +L+  YA  G L+ +Y VF  +G  D V+W +M++G+ 
Sbjct: 256 LAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYA 315

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +AI+L+  M  + ++PD VT   +LSAC+    +      NE  S F+ +    
Sbjct: 316 AHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV------NEGKSYFNVMSEVY 369

Query: 277 NVNP--DEFT-FVSVLSACAQL 295
            + P  D ++  V +L  C  L
Sbjct: 370 GIEPRVDHYSCMVDLLGRCGLL 391


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/641 (37%), Positives = 358/641 (55%), Gaps = 59/641 (9%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG 83
           NPT        QH       L+++      L Q    +L++GL  +P   ++LF   A  
Sbjct: 21  NPTASPSRAAEQH----CLRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAASASA 76

Query: 84  TFSSLEYAREMFDQIPQPNL----YTWNTLIRAYSSSAEPI--QSFMIFLQLVYNSPYFP 137
             + LE    +   +  P+L    +  NTLIR + +S  P   +    F  L+  +   P
Sbjct: 77  APALLE---PLVSSLLGPSLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAP 133

Query: 138 NEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAI--CGDLAMAY 194
           N+FTFPF++K+ A L     VG   H   +K  F  D ++SN+LIH Y+    G L  A 
Sbjct: 134 NKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDAR 193

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            VF  + ++  V+W++MI G+V+ G    A+ L+R M++  V+PDEVT++ VL+A A   
Sbjct: 194 NVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLG 253

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
            LE  RW                                          +   ++++GI 
Sbjct: 254 ALELTRW------------------------------------------VGRFVEREGIG 271

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            +  L  +LID   KCG++D A+ VF  ++ R V  W+++I   AM G G+EA+ +F  M
Sbjct: 272 KSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEM 331

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +   V P+ V F  VL ACSH+G+VDEGR +F+ M+  YG+ P ++HY CMVDM GRAG+
Sbjct: 332 KAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGM 391

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           +++ +EF+  MP+ P   +W  L+ AC+ H  +EL E    +LL   P +    V+LSN+
Sbjct: 392 VEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNV 451

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA T +W   SE+R+ M   G+KK PGCS +E++GE+H+F+AG+ SHP  KEIY  ++E+
Sbjct: 452 YALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEM 511

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
              L+  G++   S +L  ++EED +E AL  HSE+LAIA+ L+   P   +R+VKNLRV
Sbjct: 512 SRELRRIGHIAATSEVLLDLDEED-KEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRV 570

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH   K IS++YNREI++RDR RFH F+ G+CSC D+W
Sbjct: 571 CSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 339/601 (56%), Gaps = 49/601 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + H   +R+GL      A+ +    C  G    +  AR +FD +P  N  +WN +I  Y+
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCG---DIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            + +  ++  +F ++V        + +    ++A   L     G  +H ++++   + ++
Sbjct: 239 QNGDSREALALFNRMVEEGVDV-TDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNV 297

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + N+LI  Y+ C  + +A  VF  + ++  VSWN+MI G  Q G  E A+ L       
Sbjct: 298 SVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRL------- 350

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                             F  +QL +NV PD FT VSV+ A A 
Sbjct: 351 ----------------------------------FTRMQL-ENVKPDSFTLVSVIPALAD 375

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +        IH    +  +  + Y+ T+LIDMY KCG ++ A  +F++ + R V  W+ M
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G+  +G G+ A++LF  M+   + PN  TF +VL ACSH+GLVDEGR +F  M+  YG
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + PG++HY  MVD+LGRAG LDEA  FI+KMP+ PG SV+GA+LGACK+H+NVELAE + 
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESA 555

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             + EL P+     VLL+NIYA    W +V+ +R  M  +GL+K PG S I++  EIH F
Sbjct: 556 QKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
            +G ++H   KEIYS+L +++  +K+ GYVP+   +  +  E+DV+ Q LN HSE+LAIA
Sbjct: 616 YSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDV--EDDVKAQLLNTHSEKLAIA 673

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLI   P   I+I KNLRVC DCH   KLIS +  REI++RD  RFHHF+ G CSC DY
Sbjct: 674 FGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDY 733

Query: 655 W 655
           W
Sbjct: 734 W 734



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 45/322 (13%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++K  A       G+A+H  +     + +   + +L + YA C   A A  VF  +
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIEL-YREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
             +D V+WN++++G+ + G    A+E+  R  E E  +PD +T+V               
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV--------------- 165

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                                      SVL ACA   A+    + HA   + G++    +
Sbjct: 166 ---------------------------SVLPACANARALAACREAHAFAIRSGLEELVNV 198

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            T+++D Y KCG++  A  VF  + +++   W+ MI G+A  G  REAL LF+RM E  V
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
               V+    L AC   G +DEG M  +++    G+   V     ++ M  +   +D A 
Sbjct: 259 DVTDVSVLAALQACGELGCLDEG-MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 440 EFIEKMPIVPGASVWGALLGAC 461
              +++      S W A++  C
Sbjct: 318 HVFDELDRRTQVS-WNAMILGC 338



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
           A L A A + DL        AL+ F  +  S    P   TF S+L  CA  G +  G  +
Sbjct: 29  ARLRASAARSDLP------AALAAFVAMS-SAGAPPVLRTFTSLLKLCAARGDLATGRAV 81

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           HA++  +GI       T+L +MY KC     A  VF  +  RD   W+ ++AG+A  G  
Sbjct: 82  HAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLA 141

Query: 365 REALDLFSRMQEAK-VKPNAVTFTNVL 390
           R A+++  RMQE +  +P+++T  +VL
Sbjct: 142 RMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 352/636 (55%), Gaps = 56/636 (8%)

Query: 28  LTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKLFTPCA 81
           + V++G+      +  LI  C  I+ L   K++H+ ++R+GL  D     S   ++  C 
Sbjct: 252 MLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCG 311

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY--SSSAEPIQSFMIFLQLVYNSPYFPNE 139
           L     ++ AR++FD + + N+ +W  L+  Y         ++  +F  ++      PN 
Sbjct: 312 L-----VQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNC 366

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           FTF  V+KA A L  F  G+ +HG  IK        + N L+  YA  G +  A   F +
Sbjct: 367 FTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDV 426

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           + +K++VS   +    V+        +L RE+E                           
Sbjct: 427 LFEKNLVSETVVDDTNVKDFNLNSEQDLDREVE--------------------------- 459

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
            +    +S               FT+ S+LS  A +G +  G QIHA + K G + +  +
Sbjct: 460 -YVGSGVS--------------SFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSV 504

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +LI MY+KCGN + AL+VF+ ++  +V  W+++I GFA +G   +AL+LF  M E  V
Sbjct: 505 NNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGV 564

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           KPN VT+  VL ACSH GL+DE    F  M   +G+VP ++HY CMVD+LGR+GLL EA+
Sbjct: 565 KPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAI 624

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           EFI  MP    A VW   LG+C++H N +L E+A   +LE EP +    +LLSN+YA  G
Sbjct: 625 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEG 684

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           +W++V+ +RK+M+   + KE G S IEV  ++HKF  G++ HP  ++IY KLDE+  ++K
Sbjct: 685 RWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIK 744

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           + GYVPN   +L  VE+E  +EQ L  HSE+LA+A+ LIS    +PIR+ KNLRVCGDCH
Sbjct: 745 NVGYVPNTDFVLHDVEDEQ-KEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCH 803

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           T  K IS +  REI++RD  RFHH + G CSC DYW
Sbjct: 804 TAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 185/395 (46%), Gaps = 72/395 (18%)

Query: 22  HPNPTTLTVNNGHQHHPHPVFS---LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASK 75
           H   TTL + +    H + + +   L+KQC   KN    K +H ++  + L  D    + 
Sbjct: 33  HKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNS 92

Query: 76  LFT--------PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
           L T          A   F S+E ++         ++ +++++I  ++++   +++  +F 
Sbjct: 93  LITLYSKSNDPITAFSIFQSMENSKR--------DVVSYSSIISCFANNRNCLKAVEMFD 144

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYA- 185
           QL+     +PNE+ F  VI+A  +   F+ G  + G V+K+  F+  + +   LI  +  
Sbjct: 145 QLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVK 204

Query: 186 --ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVT 242
                DL  A  VF  + +K+VV+W  MI+   Q G+ ++AI+L+ EM + +   PD  T
Sbjct: 205 GCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFT 264

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
           +  ++S CA                              E  F+S            +G 
Sbjct: 265 LTGLISVCA------------------------------EIQFLS------------LGK 282

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           ++H+ + + G+ L+  +  SL+DMY KCG + +A +VF  ++  +V  W+ ++ G+   G
Sbjct: 283 ELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGG 342

Query: 363 CG--REALDLFSRM-QEAKVKPNAVTFTNVLCACS 394
            G  REA+ +FS M  +  V PN  TF+ VL AC+
Sbjct: 343 GGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 132/310 (42%), Gaps = 45/310 (14%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T   ++K   R     +G+ +H  +  S+   D  + NSLI  Y+   D   A+ +F   
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIF--- 110

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
                                           MEN K D V+  +++S  A  R+     
Sbjct: 111 ------------------------------QSMENSKRDVVSYSSIISCFANNRNCL--- 137

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYL 319
              +A+ +F +L L   V P+E+ F +V+ AC + G    G+ +   + K G    +  +
Sbjct: 138 ---KAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCV 194

Query: 320 TTSLIDMYTK---CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ- 375
              LIDM+ K     +L+ A +VF  ++ ++V  W+ MI   A YG   EA+DLF  M  
Sbjct: 195 GCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLV 254

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            +   P+  T T ++  C+    +  G+   + +    G+V  +     +VDM  + GL+
Sbjct: 255 SSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWV-IRSGLVLDLCVGCSLVDMYAKCGLV 313

Query: 436 DEAVEFIEKM 445
            EA +  + M
Sbjct: 314 QEARKVFDGM 323


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 342/614 (55%), Gaps = 55/614 (8%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE---MFDQIPQP 101
           +  C +I   ++IH ++ ++ L+ D +   +L T      ++ L YA +   +FD +P  
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVT-----CYNKLGYAEDALKLFDDMPHK 103

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L +WN+LI  +S       S   F  + +     PNE T   +I A    +    G+ I
Sbjct: 104 DLVSWNSLISGFSRCLH--MSLTAFYTMKFEMSVKPNEVTILSMISACNGALD--AGKYI 159

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG  IK     ++ ++NSLI+ Y   GDL  A  +F  I   + VSWNS+I+  V  G  
Sbjct: 160 HGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCA 219

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            + I+ + +M                      R L                     +  D
Sbjct: 220 REGIDYFNKM----------------------RRL--------------------GIEQD 237

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           E T +++L AC  LG   +   IH  M   G      + T+L+D Y K G L  +  VF 
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            V   D   W+ M+AG+A +G GREA+ LF  M    ++P+ VTFT++L ACSHSGLV+E
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ +FN M  VYG+ P V HY+CMVD+LGR GLL++A E I+ MP+ P A VWGALLGAC
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H N+EL +    HL+ +EP +    ++LSN+Y+ +  W + +++R  ++  GLK+ PG
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
            SSIE   + H F  G+ SHP  ++IYSKL+E++ +++  GY     ++LQ VEEE V+E
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEE-VKE 536

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
             +N HSE+LAIA+GL+  +  + + I KNLR+CGDCH+ AKLIS +  R I++RD  RF
Sbjct: 537 DMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRF 596

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G CSC DYW
Sbjct: 597 HHFSDGFCSCADYW 610



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 19/262 (7%)

Query: 41  VFSLIKQCKN-IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           + S+I  C   +   K IH   ++ G   +   A+ L      G    L  A  +F+ IP
Sbjct: 142 ILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLIN--MYGKSGDLTSACRLFEAIP 199

Query: 100 QPNLYTWNTLIRAYSSSA---EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            PN  +WN++I A  ++    E I  F    +L        +E T   +++A   L   +
Sbjct: 200 DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ----DEGTILALLQACLHLGVGK 255

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + ++IHG++  + F   + I+ +L+  YA  G L+ +Y VF  +G  D V+W +M++G+ 
Sbjct: 256 LAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYA 315

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +AI+L+  M  + ++PD VT   +LSAC+    +      NE  S F+ +    
Sbjct: 316 AHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV------NEGKSYFNVMSEVY 369

Query: 277 NVNP--DEFT-FVSVLSACAQL 295
            + P  D ++  V +L  C  L
Sbjct: 370 GIEPRVDHYSCMVDLLGRCGLL 391


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 339/601 (56%), Gaps = 49/601 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + H   +R+GL      A+ +    C  G    +  AR +FD +P  N  +WN +I  Y+
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCG---DIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            + +  ++  +F ++V        + +    ++A   L     G  +H ++++   + ++
Sbjct: 239 QNGDSREALALFNRMVEEGVDV-TDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNV 297

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + N+LI  Y+ C  + +A  VF  + ++  VSWN+MI G  Q G  E A+ L       
Sbjct: 298 SVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRL------- 350

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                             F  +QL +NV PD FT VSV+ A A 
Sbjct: 351 ----------------------------------FTRMQL-ENVKPDSFTLVSVIPALAD 375

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +        IH    +  +  + Y+ T+LIDMY KCG ++ A  +F++ + R V  W+ M
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G+  +G G+ A++LF  M+   + PN  TF +VL ACSH+GLVDEGR +F  M+  YG
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + PG++HY  MVD+LGRAG LDEA  FI+KMP+ PG SV+GA+LGACK+H+NVELAE + 
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESA 555

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             + EL P+     VLL+NIYA    W +V+ +R  M  +GL+K PG S I++  EIH F
Sbjct: 556 QKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
            +G ++H   KEIYS+L +++  +K+ GYVP+   +  +  E+DV+ Q LN HSE+LAIA
Sbjct: 616 YSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDV--EDDVKAQLLNTHSEKLAIA 673

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GLI   P   I+I KNLRVC DCH   KLIS +  REI++RD  RFHHF+ G CSC DY
Sbjct: 674 FGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDY 733

Query: 655 W 655
           W
Sbjct: 734 W 734



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 45/322 (13%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++K  A       G+A+H  +     + +   + +L + YA C   A A  VF  +
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIEL-YREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
             +D V+WN++++G+ + G    A+E+  R  E E  +PD +T+V               
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLV--------------- 165

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                                      SVL ACA   A+    + HA   + G++    +
Sbjct: 166 ---------------------------SVLPACANARALAACREAHAFAIRSGLEELVNV 198

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            T+++D Y KCG++  A  VF  + +++   W+ MI G+A  G  REAL LF+RM E  V
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
               V+    L AC   G +DEG M  +++    G+   V     ++ M  +   +D A 
Sbjct: 259 DVTDVSVLAALQACGELGCLDEG-MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 440 EFIEKMPIVPGASVWGALLGAC 461
              +++      S W A++  C
Sbjct: 318 HVFDELDRRTQVS-WNAMILGC 338



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL+ F  +  S    P   TF S+L  CA  G +  G  +HA++  +GI       T+L 
Sbjct: 43  ALAAFVAMS-SAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNA 383
           +MY KC     A  VF  +  RD   W+ ++AG+A  G  R A+++  RMQE +  +P++
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 384 VTFTNVL 390
           +T  +VL
Sbjct: 162 ITLVSVL 168


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 354/617 (57%), Gaps = 30/617 (4%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQI 98
           S +  C  +  L   KQ+H Q++R     DPY AS L    A  G F     A+ +F+ +
Sbjct: 295 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE---AKGVFNSL 351

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              N   W  LI  +       +S  +F Q+        ++F    +I      +   +G
Sbjct: 352 HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL-DQFALATLISGCCSRMDLCLG 410

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H + +KS     + +SNSLI  YA C +L  A  +F  + +KD+VSW SMI+ + Q 
Sbjct: 411 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 470

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G   KA E +  M  +NV    +T  A+L A  +    E G      L ++  +   + V
Sbjct: 471 GNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDG------LRMYKVMLSEEYV 520

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  T+V++   CA LGA  +G QI  +  K G+ ++  +  ++I MY+KCG + +A +
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 580

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  +D+  W+ MI G++ +G G++A+++F  + +   KP+ +++  VL  CSHSGL
Sbjct: 581 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 640

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG+ +F+ M+  + + PG++H++CMVD+LGRAG L EA + I+ MP+ P A VWGALL
Sbjct: 641 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 700

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            ACKIH N ELAE A  H+ EL+  + G+ +L++ IYA  GK D+ +++RK MR  G+KK
Sbjct: 701 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 760

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG S +EV+ ++H F A + SHP    I  KLDE++ ++   GYV   S   ++     
Sbjct: 761 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEI----- 815

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
                   HSE+LA+A+GL+++    PI I+KNLR+CGDCHTV KLIS +  RE ++RD 
Sbjct: 816 -------HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDA 868

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF GG+CSC DYW
Sbjct: 869 VRFHHFNGGSCSCGDYW 885



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 194/403 (48%), Gaps = 42/403 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A E+F ++P  ++ +WNTL+  Y  S + + S   FL +  +   +PN FT    +K
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           +   L    +   +  MV K   +DD  ++ +L+  +  CG + +A  +FV I +  +  
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            NSM++G+V+    + A+EL+  M   +V    + MV+ LS   + R         EAL 
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM-MVSALSQSGRVR---------EALD 276

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +  ++Q SK V  D  T+ S L+ACA+L ++  G Q+HA++ +    ++ Y+ ++L+++Y
Sbjct: 277 MVVDMQ-SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELY 335

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            K G   +A  VF+++  R+   W+ +I+GF  YGC  E+++LF++M+   +  +     
Sbjct: 336 AKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALA 395

Query: 388 NVLCACS-----------HSGLVDEGRM----FFNQMEPVYGVVPGVK------------ 420
            ++  C            HS  +  G++      N +  +Y     ++            
Sbjct: 396 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 455

Query: 421 ---HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
               +T M+    + G + +A EF + M        W A+LGA
Sbjct: 456 DIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNAMLGA 497



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 175/378 (46%), Gaps = 15/378 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E+FD +P+ ++ +WN ++ A S S    ++  + + +        +  T+   + 
Sbjct: 240 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL-DSTTYTSSLT 298

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL   R G+ +H  VI++    D +++++L+  YA  G    A  VF  +  ++ V+
Sbjct: 299 ACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA 358

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +ISGF+Q G F +++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 359 WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ------ 412

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L            S++S  A+   +     I   M ++ I       TS+I  Y
Sbjct: 413 -LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI----VSWTSMITAY 467

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTF 386
           ++ GN+ KA E F  +  ++V  W+ M+  +  +G   + L ++  M  E  V+P+ VT+
Sbjct: 468 SQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 527

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G     +   V G++        ++ M  + G + EA +  + + 
Sbjct: 528 VTLFKGCADLGANKLGDQIIGRTVKV-GLIIDTSVANAVITMYSKCGRILEARKVFDFLN 586

Query: 447 IVPGASVWGALLGACKIH 464
           +    S W A++     H
Sbjct: 587 VKDIVS-WNAMITGYSQH 603



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 47/311 (15%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM-IGKKDVVSWNSMISGFVQGGF 220
           HG ++       +F+ N+L+H Y  CG L+ A  + +M I   +V++ N M++G+ + G 
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              A+EL+  M   +V      M     +          R    +L  F  +  S +  P
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQS----------RQYLVSLETFLSMHRSGDSWP 156

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG--------- 331
           + FT    + +C  LG   + +Q+ A ++K   + +  +  +L+DM+ +CG         
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 216

Query: 332 ----------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
                                  +D ALE+F ++  RDV  W+ M++  +  G  REALD
Sbjct: 217 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 276

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVD 427
           +   MQ   V+ ++ T+T+ L AC+    +  G+    Q   V   +P +  Y  + +V+
Sbjct: 277 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ---VIRNLPHIDPYVASALVE 333

Query: 428 MLGRAGLLDEA 438
           +  ++G   EA
Sbjct: 334 LYAKSGCFKEA 344


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 354/617 (57%), Gaps = 30/617 (4%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQI 98
           S +  C  +  L   KQ+H Q++R     DPY AS L    A  G F     A+ +F+ +
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKE---AKGVFNSL 331

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              N   W  LI  +       +S  +F Q+        ++F    +I      +   +G
Sbjct: 332 HDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL-DQFALATLISGCCSRMDLCLG 390

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H + +KS     + +SNSLI  YA C +L  A  +F  + +KD+VSW SMI+ + Q 
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 450

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G   KA E +  M  +NV    +T  A+L A  +    E G      L ++  +   + V
Sbjct: 451 GNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDG------LRMYKVMLSEEYV 500

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  T+V++   CA LGA  +G QI  +  K G+ ++  +  ++I MY+KCG + +A +
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 560

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +  +D+  W+ MI G++ +G G++A+++F  + +   KP+ +++  VL  CSHSGL
Sbjct: 561 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG+ +F+ M+  + + PG++H++CMVD+LGRAG L EA + I+ MP+ P A VWGALL
Sbjct: 621 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 680

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            ACKIH N ELAE A  H+ EL+  + G+ +L++ IYA  GK D+ +++RK MR  G+KK
Sbjct: 681 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 740

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG S +EV+ ++H F A + SHP    I  KLDE++ ++   GYV   S   ++     
Sbjct: 741 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEI----- 795

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
                   HSE+LA+A+GL+++    PI I+KNLR+CGDCHTV KLIS +  RE ++RD 
Sbjct: 796 -------HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDA 848

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF GG+CSC DYW
Sbjct: 849 VRFHHFNGGSCSCGDYW 865



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 194/403 (48%), Gaps = 42/403 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A E+F ++P  ++ +WNTL+  Y  S + + S   FL +  +   +PN FT    +K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           +   L    +   +  MV K   +DD  ++ +L+  +  CG + +A  +FV I +  +  
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            NSM++G+V+    + A+EL+  M   +V    + MV+ LS   + R         EAL 
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNM-MVSALSQSGRVR---------EALD 256

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +  ++Q SK V  D  T+ S L+ACA+L ++  G Q+HA++ +    ++ Y+ ++L+++Y
Sbjct: 257 MVVDMQ-SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELY 315

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            K G   +A  VF+++  R+   W+ +I+GF  YGC  E+++LF++M+   +  +     
Sbjct: 316 AKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALA 375

Query: 388 NVLCACS-----------HSGLVDEGRM----FFNQMEPVYGVVPGVK------------ 420
            ++  C            HS  +  G++      N +  +Y     ++            
Sbjct: 376 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 435

Query: 421 ---HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
               +T M+    + G + +A EF + M        W A+LGA
Sbjct: 436 DIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNAMLGA 477



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 175/378 (46%), Gaps = 15/378 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E+FD +P+ ++ +WN ++ A S S    ++  + + +        +  T+   + 
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL-DSTTYTSSLT 278

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A ARL   R G+ +H  VI++    D +++++L+  YA  G    A  VF  +  ++ V+
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVA 338

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +ISGF+Q G F +++EL+ +M  E +  D+  +  ++S C  + DL  GR       
Sbjct: 339 WTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ------ 392

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L            S++S  A+   +     I   M ++ I       TS+I  Y
Sbjct: 393 -LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDI----VSWTSMITAY 447

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTF 386
           ++ GN+ KA E F  +  ++V  W+ M+  +  +G   + L ++  M  E  V+P+ VT+
Sbjct: 448 SQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 507

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   C+  G    G     +   V G++        ++ M  + G + EA +  + + 
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTVKV-GLIIDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 447 IVPGASVWGALLGACKIH 464
           +    S W A++     H
Sbjct: 567 VKDIVS-WNAMITGYSQH 583



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 47/311 (15%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM-IGKKDVVSWNSMISGFVQGGF 220
           HG ++       +F+ N+L+H Y  CG L+ A  + +M I   +V++ N M++G+ + G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              A+EL+  M   +V      M     +          R    +L  F  +  S +  P
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQS----------RQYLVSLETFLSMHRSGDSWP 136

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG--------- 331
           + FT    + +C  LG   + +Q+ A ++K   + +  +  +L+DM+ +CG         
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF 196

Query: 332 ----------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
                                  +D ALE+F ++  RDV  W+ M++  +  G  REALD
Sbjct: 197 VRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVD 427
           +   MQ   V+ ++ T+T+ L AC+    +  G+    Q   V   +P +  Y  + +V+
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ---VIRNLPHIDPYVASALVE 313

Query: 428 MLGRAGLLDEA 438
           +  ++G   EA
Sbjct: 314 LYAKSGCFKEA 324


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 348/569 (61%), Gaps = 17/569 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +F+++       WN +I  Y  S   +++F +F ++V       +EFTF  V+ A A
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPL-DEFTFTSVLSACA 305

Query: 151 RLVQFRVGQAIHGMVIK--SSF--EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            +  F  G+++HG +I+   +F  E  L ++N+L+ FY+ CG++A+A  +F  +  KDVV
Sbjct: 306 NVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVV 365

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+++SG+V+    +KA+E++ EM  +N    E++ + ++S          G +  +AL
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKN----ELSWMVMVSGYVH------GGFAEDAL 415

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F++++ S+NV P ++T+   ++AC +LGA+  G Q+H  + + G + +     +LI M
Sbjct: 416 KLFNKMR-SENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITM 474

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y +CG + +A  +F  + + D   W+ MI+    +G GREAL+LF RM    + P+ ++F
Sbjct: 475 YARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISF 534

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL AC+HSGLVDEG  +F  M+  +G++PG  HYT ++D+LGRAG + EA + I+ MP
Sbjct: 535 LTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P  S+W A+L  C+   ++EL  +A   L ++ P++ G  +LLSN Y+  G W + + 
Sbjct: 595 FEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAAR 654

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK MR  G+KKEPGCS IE   ++H FL G++ HP   E+Y  L+ + A+++  GYVP+
Sbjct: 655 VRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPD 714

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  +E    +E  L  HSERLA+ +GL+++ P   + ++KNLR+C DCH     +S
Sbjct: 715 TKVVLHDMEPHQ-KEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMS 773

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K   REI++RD  RFHHF+ G CSC +YW
Sbjct: 774 KAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 187/469 (39%), Gaps = 58/469 (12%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMF 95
           HPH    LI      + L    T      LF  DP   S      A      L  A   F
Sbjct: 58  HPHLTLRLIHLYTLSRDLPAAAT------LFCADPCPVSATSLVAAYAAADRLPAAVSFF 111

Query: 96  DQIPQPNLYT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL- 152
           D +P     T   N +I AY+ ++    +  +F  L+ +    P++++F  ++ A   L 
Sbjct: 112 DAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLP 171

Query: 153 -VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC------------------------ 187
            +  R    +H  V+KS     L + N+L+  Y  C                        
Sbjct: 172 NISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTW 231

Query: 188 ----------GDLAMAYCVFVMI-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
                     GD+  A  VF  + GK DVV WN+MISG+V  G   +A EL+R M +E V
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVV-WNAMISGYVHSGMAVEAFELFRRMVLERV 290

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
             DE T  +VLSACA       G+  +  +       + +   P     V+  S C   G
Sbjct: 291 PLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKC---G 347

Query: 297 AMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            + +  +I   M  K  +  N  L+      Y +   LDKA+EVF  +  ++   W  M+
Sbjct: 348 NIAVARRIFDNMTLKDVVSWNTILSG-----YVESSCLDKAVEVFEEMPYKNELSWMVMV 402

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           +G+   G   +AL LF++M+   VKP   T+   + AC   G +  G+     +  + G 
Sbjct: 403 SGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQL-GF 461

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
                    ++ M  R G + EA      MP +   S W A++ A   H
Sbjct: 462 EGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVS-WNAMISALGQH 509



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 161/372 (43%), Gaps = 50/372 (13%)

Query: 8   HMETLSTPVISL-PRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQM-LRTG 65
           H +++   +I L P       L VNN        + +   +C NI   ++I   M L+  
Sbjct: 312 HGKSVHGQIIRLQPNFVPEAALPVNNA-------LVTFYSKCGNIAVARRIFDNMTLKDV 364

Query: 66  LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           + ++   +  + + C       L+ A E+F+++P  N  +W  ++  Y        +  +
Sbjct: 365 VSWNTILSGYVESSC-------LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKL 417

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           F ++  +    P ++T+   I A   L   + G+ +HG +++  FE      N+LI  YA
Sbjct: 418 FNKM-RSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYA 476

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
            CG +  A+ +F+++   D VSWN+MIS   Q G   +A+EL+  M  E + PD ++ + 
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 246 VLSAC--------------AKKRDLEFGRWPNE------------ALSIFHELQLSKNV- 278
           VL+AC              + KRD  FG  P E            A  I     L K + 
Sbjct: 537 VLTACNHSGLVDEGFRYFESMKRD--FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594

Query: 279 -NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKA 336
             P    + ++LS C   G M++G     ++ K   + +  Y+  S  + Y+  G    A
Sbjct: 595 FEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLS--NTYSAAGCWVDA 652

Query: 337 LEVFHTVKSRDV 348
             V   ++ R V
Sbjct: 653 ARVRKLMRDRGV 664


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 351/624 (56%), Gaps = 27/624 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + S +  C N+ Q+KQIH  +LR GL    Y  +KL             YAR + + +  
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N + W  +IR Y+   +  ++  ++   +      P  FTF  ++KA   +    +G+ 
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMY-GCMRKEEITPVSFTFSALLKACGTMKDLNLGRQ 170

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
            H    +      +++ N++I  Y  C  +  A  VF  + ++DV+SW  +I+ + + G 
Sbjct: 171 FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGN 230

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E A EL+  +  +    D V   A+++  A+         P EAL  F  ++ S  +  
Sbjct: 231 MECAAELFESLPTK----DMVAWTAMVTGFAQNAK------PQEALEYFDRMEKS-GIRA 279

Query: 281 DEFTFVSVLSACAQLGA---MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           DE T    +SACAQLGA    D  VQI A+        +  + ++LIDMY+KCGN+++A+
Sbjct: 280 DEVTVAGYISACAQLGASKYADRAVQI-AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAV 338

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHS 396
            VF ++ +++VF +S+MI G A +G  +EAL LF  M  + ++KPN VTF   L ACSHS
Sbjct: 339 NVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHS 398

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLVD+GR  F+ M   +GV P   HYTCMVD+LGR G L EA+E I+ M + P   VWGA
Sbjct: 399 GLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGA 458

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGAC+IH N E+AE A  HL ELEP+  G  +LLSN+YA  G W  V  +RK ++  GL
Sbjct: 459 LLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL 518

Query: 517 KKEPGCS-SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           KK P  S  ++ NG++HKF  G  +HP+  +I  KL+E+V RL   GY P+ S +     
Sbjct: 519 KKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSV----- 573

Query: 576 EEDVQEQALNL----HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             DV + A  L    H+E+LA+A+ L++      I I+KNLR+C DCH   +L S++  +
Sbjct: 574 PYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGK 633

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
            I++RD  RFHHFR G+CSC D+W
Sbjct: 634 VIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/641 (36%), Positives = 368/641 (57%), Gaps = 36/641 (5%)

Query: 39  HPVFSLIKQCK---NIKQLKQIHTQML-RTGLFFDPYSAS-KLFTPCALGTFSSLEYARE 93
           H +  L+  C+   +++ L+  H ++L    L   P SA+ ++    A    ++L  AR 
Sbjct: 16  HALLRLVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARA 75

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARL 152
           + D  P      +N L+R  ++++    + ++F  +       FP+ +T+P  +K+ A  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ IH    +   + ++F+++S I  YA CG    AY +F  +  +DVVSWN+MI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 213 SGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKR------------DLEFG 259
           SGF   G F +A++++RE+  ++  KPD  TM ++L +  K R            ++ F 
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 260 ---RWPN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
               W              EA+ +F  +Q    + PD  T  +VL +C ++ A+ +G +I
Sbjct: 256 GLISWNAMLAVYTNNEMHVEAVELFMRMQ-KDGIEPDAVTLATVLPSCGEVSALSLGKRI 314

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  +K++ +  +  L  +L+DMY  CG L +A +VF ++ +RDV  W+++I+ +  +G G
Sbjct: 315 HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 374

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
           REA+DLF +M    ++P+++ F  +L ACSH+GL+D G+ +F  M   + + P ++HY C
Sbjct: 375 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 434

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           MVD+LGRAG + EA +FI  MPI P   VWGALLGAC+IH N+++   A   LL L P+ 
Sbjct: 435 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 494

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G  VLLSNIYA+ G+W +VS +R  M   G+KK PG S+ E+   +H F  G++SHP  
Sbjct: 495 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQS 554

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           K IY KL E++ R++  GY P     L  VEEED +E  L++HSE+LAIA+ LI+  P  
Sbjct: 555 KMIYKKLSELLRRIREMGYNPEVEATLHDVEEED-KEGHLSVHSEKLAIAFLLINTNPGT 613

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
           PIRI  NLR C DCH  AKLIS +  REI+L+D  R H+ +
Sbjct: 614 PIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 354/585 (60%), Gaps = 36/585 (6%)

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C +G +   + L  AR++FD++P  ++ +WNT+I  Y+   +  Q+  +F     N    
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF-----NESPI 260

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFISNSLIHFYAICG-----DL 190
            + FT+  ++           G   +GMV ++  + D++ + N + +   + G      +
Sbjct: 261 RDVFTWTAMVS----------GYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKM 310

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            +A  +F  +  +++ SWN+MI+G+ Q G   +A +L+  M     + D V+  A++S  
Sbjct: 311 VIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP----QRDCVSWAAIISGY 366

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           A+    E      EAL++F E++     + +  TF   LS CA + A+++G Q+H ++ K
Sbjct: 367 AQNGHYE------EALNMFVEMKRDGE-SSNRSTFSCALSTCADIAALELGKQVHGQVVK 419

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            G +  C++  +L+ MY KCG+ D+A +VF  ++ +DV  W+TMIAG+A +G GR+AL L
Sbjct: 420 AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVL 479

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F  M++A VKP+ +T   VL ACSHSGL+D G  +F  M+  Y V P  KHYTCM+D+LG
Sbjct: 480 FESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLG 539

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG L+EA   +  MP  PGA+ WGALLGA +IH N EL E A   + ++EP+N G  VL
Sbjct: 540 RAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVL 599

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           LSN+YA +G+W +V ++R  MR +G++K  G S +EV  +IH F  G+  HP    IY+ 
Sbjct: 600 LSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAF 659

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVK 610
           L+E+  +++  GYV +   +L  VEEE+ +E  L  HSE+LA+A+G++++   +PIR++K
Sbjct: 660 LEELDLKMRREGYVSSTKLVLHDVEEEE-KEHMLKYHSEKLAVAFGILTIPAGRPIRVMK 718

Query: 611 NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           NLRVC DCH   K ISK+  R I+LRD +RFHHF  G CSC DYW
Sbjct: 719 NLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 193/448 (43%), Gaps = 47/448 (10%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF------FDPYSASKLFTPCALG 83
           + NGH      VF+ + +  ++     I +  LR   F      FD      LF+   + 
Sbjct: 57  MRNGHCDSALRVFNSMPRRSSVSYNAMI-SGYLRNAKFSLARDLFDKMPERDLFSWNVML 115

Query: 84  TF----SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           T       L  A ++FD +P+ ++ +WN ++  Y+ +      F+   + V+N     N 
Sbjct: 116 TGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNG-----FVDEAREVFNKMPHRNS 170

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            ++  ++  AA +   R+ +A      +S++E  L   N L+  Y     L  A  +F  
Sbjct: 171 ISWNGLL--AAYVHNGRLKEARRLFESQSNWE--LISWNCLMGGYVKRNMLGDARQLFDR 226

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           +  +DV+SWN+MISG+ Q G   +A  L+ E  + +V     T  A++S   +   ++  
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVD-- 280

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
               EA   F E+ +      +E ++ ++L+   Q   M I  ++   M  + I      
Sbjct: 281 ----EARKYFDEMPV-----KNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----S 327

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             ++I  Y + G + +A ++F  +  RD   W+ +I+G+A  G   EAL++F  M+    
Sbjct: 328 WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE 387

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA- 438
             N  TF+  L  C+    ++ G+    Q+    G   G      ++ M  + G  DEA 
Sbjct: 388 SSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEAN 446

Query: 439 --VEFIEKMPIVPGASVWGALLGACKIH 464
              E IE+  +V     W  ++     H
Sbjct: 447 DVFEGIEEKDVVS----WNTMIAGYARH 470



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 160/366 (43%), Gaps = 42/366 (11%)

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +   P++ TWN  I ++  +     +  +F     NS    +  ++  +I    R  +F 
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVF-----NSMPRRSSVSYNAMISGYLRNAKFS 94

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + + +   +     E DLF  N ++  Y     L  A+ +F ++ KKDVVSWN+M+SG+ 
Sbjct: 95  LARDLFDKMP----ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYA 150

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q GF ++A E++ +M   N     ++   +L+A      L+      EA  +F       
Sbjct: 151 QNGFVDEAREVFNKMPHRN----SISWNGLLAAYVHNGRLK------EARRLFES----- 195

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDK 335
             N +  ++  ++    +   +    Q+  +M  +  I  N     ++I  Y + G+L +
Sbjct: 196 QSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWN-----TMISGYAQVGDLSQ 250

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-CS 394
           A  +F+    RDVF W+ M++G+   G   EA   F  M    VK N +++  +L     
Sbjct: 251 AKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM---PVK-NEISYNAMLAGYVQ 306

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +  +V  G +F  +  P       +  +  M+   G+ G + +A +  + MP     S W
Sbjct: 307 YKKMVIAGELF--EAMP----CRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS-W 359

Query: 455 GALLGA 460
            A++  
Sbjct: 360 AAIISG 365


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/578 (39%), Positives = 335/578 (57%), Gaps = 52/578 (8%)

Query: 83  GTFSSLEY--AREMFDQIPQPNLYTWNTLIRA---YSSSAEPIQSFMIFLQLVYNSPYFP 137
           G F S ++  AR+MFD++P+ N+ TWN ++     +  + E +  F    +L     + P
Sbjct: 127 GYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNEL----GFLP 182

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           +EF    V++  A L     G+ +HG V K  FE +L + +SL H Y  CG L     + 
Sbjct: 183 DEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLI 242

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  ++VV+WN++I+G  Q G+ E+ ++ Y  M+M   +                    
Sbjct: 243 RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFR-------------------- 282

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                                 PD+ TFVSV+S+C++L  +  G QIHA++ K G  L  
Sbjct: 283 ----------------------PDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIV 320

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            + +SLI MY++CG L+ +L+VF   ++ DV  WS+MIA +  +G G EA+DLF++M++ 
Sbjct: 321 SVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQE 380

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           K++ N VTF ++L ACSH GL ++G  FF+ M   YGV P ++HYTCMVD+LGR G ++E
Sbjct: 381 KLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEE 440

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A   I  MP+      W  LL ACKIH+  E+A      +  L+P +    VLLSNI+A 
Sbjct: 441 AEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHAS 500

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
             +WD+VS++RK MR   LKKEPG S +EV  +IH+F  G+ SHP   EI S L E+ + 
Sbjct: 501 DKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSE 560

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYVP+   +L  ++ ED +E +L  HSE+LAIA+ L+      PIR++KNLRVC D
Sbjct: 561 MKKRGYVPDIDSVLHDMDVED-KEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSD 619

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   K IS++ NREI++RD  RFHHF+ G CSC DYW
Sbjct: 620 CHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 170/347 (48%), Gaps = 24/347 (6%)

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           Q+F  F   +++ P       F  ++++        +G+ +H ++I S    D FISN L
Sbjct: 39  QAFDRFSSHIWSEPSL-----FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHL 93

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           ++ Y+ CG L  A  +F ++ +K+++S N +I+G+ + G +  A +++ EM   NV    
Sbjct: 94  LNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWN 153

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
             +  ++         EF     E L +F  +       PDEF   SVL  CA L A+  
Sbjct: 154 AMVAGLI-------QFEFN---EEGLGLFSRMN-ELGFLPDEFALGSVLRGCAGLRALVA 202

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G Q+H  ++K G + N  + +SL  MY KCG+L +   +   + S++V  W+T+IAG A 
Sbjct: 203 GRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQ 262

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G   E LD ++ M+ A  +P+ +TF +V+ +CS    + +G+    ++    G    V 
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKA-GASLIVS 321

Query: 421 HYTCMVDMLGRAGLLDEAVEFI---EKMPIVPGASVWGALLGACKIH 464
             + ++ M  R G L+ +++     E   +V     W +++ A   H
Sbjct: 322 VISSLISMYSRCGCLEYSLKVFLECENGDVV----CWSSMIAAYGFH 364


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/643 (37%), Positives = 362/643 (56%), Gaps = 80/643 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL------------------------ 76
           L+K C   K  K+ +QIH  +L+ G   D Y  + L                        
Sbjct: 95  LLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRD 154

Query: 77  ---FTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
              +T    G  S   +E A+++FD+IP  ++ +WN +I  Y  +    ++  +F +++ 
Sbjct: 155 VVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMM 214

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y+  G++ 
Sbjct: 215 MTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +F  +  KDV+SWN++I G+         + LY+E                     
Sbjct: 275 TACELFDGLWNKDVISWNTLIGGYTH-------MNLYKE--------------------- 306

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                        AL +F E+ L     P++ T +S+L ACA LGA+DIG  IH  + K+
Sbjct: 307 -------------ALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKK 352

Query: 312 --GIKLNCY-LTTSLIDMYTKCGNLDKALEVFHT-VKSRDVFVWSTMIAGFAMYGCGREA 367
             G+  N   L TSLIDMY KCG++D A +VF + + +R +  W+ MI+GFAM+G    A
Sbjct: 353 LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
            D+FSRM+   ++P+ +TF  +L ACSHSG++D GR  F  M   Y + P ++HY CM+D
Sbjct: 413 FDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMID 472

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LG +GL  EA E I  MP+ P   +W +LL ACKIH N+EL E     L+++EP N G+
Sbjct: 473 LLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGS 532

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE-PGCSSIEVNGEIHKFLAGESSHPLCKE 546
            VLLSNIYA  G+W+ V+++R  +   G+KK+ PGCSSIE++  +H+F+ G+  HP  +E
Sbjct: 533 YVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNRE 592

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           IY  L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   +
Sbjct: 593 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE-WREGALRHHSEKLAIAFGLISTKPGTKL 651

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
            I+KNLRVC +CH   KLISK+Y REI+ RDR RF HFR G C
Sbjct: 652 TIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 249/447 (55%), Gaps = 20/447 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIR 111
            ++ IH QM++TGL    Y+ SKL   C +   F    YA  +FD I +PNL  WNT+ R
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            ++ S++P+ +  ++L ++ +    P+ +TFPF++K+ A+    + GQ IHG V+K  F+
Sbjct: 63  GHALSSDPVSALKLYLVMI-SLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D+++  SLI  YA  G L  A  VF +   +DVVS+ ++I+G+V  G+ E A +L+ E+
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
             ++V    V+  A++S       +E G +  EAL +F E+ +  NV PDE T V+V+SA
Sbjct: 182 PGKDV----VSWNAMISGY-----VETGNY-KEALELFKEMMMMTNVRPDESTMVTVVSA 231

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CAQ  ++++G  +H+ +   G   N  +  +LID+Y+K G ++ A E+F  + ++DV  W
Sbjct: 232 CAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISW 291

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR---MFFNQ 408
           +T+I G+      +EAL LF  M  +   PN VT  ++L AC+H G +D GR   ++ N+
Sbjct: 292 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINK 351

Query: 409 MEPVYGVVPGVKHY-TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH--E 465
              + GVV  V    T ++DM  + G +D A +  +        S W A++    +H   
Sbjct: 352 --KLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRA 409

Query: 466 NVELAEYACSHLLELEPENHGALVLLS 492
           N     ++   +  +EP++   + LLS
Sbjct: 410 NAAFDIFSRMRMNGIEPDDITFVGLLS 436


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/676 (34%), Positives = 377/676 (55%), Gaps = 68/676 (10%)

Query: 41  VFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
            F+ + +C      +K+ K++H  +L+ G   +    + L    A   F  +E A  +FD
Sbjct: 197 TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFD 254

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++ +P++ +WN++I     +        IF+Q++       +  T   V+ A A +    
Sbjct: 255 ELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVACANIGNLS 313

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+A+HG  +K+ F +++  SN+L+  Y+ CG+L  A  VFV +G   +VSW S+I+ +V
Sbjct: 314 LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYV 373

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------------- 260
           + G +  AI L+ EM+ + V+PD  T+ +++ ACA    L+ GR                
Sbjct: 374 REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP 433

Query: 261 -------------WPNEALSIFHELQL-------------SKNVNPDE------------ 282
                           EA  +F ++ +             S+N+ P+E            
Sbjct: 434 VTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQF 493

Query: 283 ----FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                T   VL ACA L A+D G +IH  + ++G   + ++  +L+DMY KCG L  A  
Sbjct: 494 KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQL 553

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  +  +D+  W+ MIAG+ M+G G EA+  F+ M+ A ++P+  +F+ +L ACSHSGL
Sbjct: 554 LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGL 613

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           ++EG  FFN M    GV P ++HY C+VD+L R G L +A +FIE MPI P  ++WG LL
Sbjct: 614 LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLL 673

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
             C+IH +V+LAE    H+ ELEP+N    V+L+N+YA+  KW+ V +LRK M+  G K+
Sbjct: 674 SGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQ 733

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PGCS IEV G+ + F+AG S HP  K+I   L ++  ++++  Y     ++  L+ E+D
Sbjct: 734 NPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYV--LINEDD 791

Query: 579 VQEQALNL-HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           ++++ +   HSE+ A+A+G++++ P + +R+ KN RVCGDCH + K +SK    EI+LRD
Sbjct: 792 MEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRD 851

Query: 638 RYRFHHFRGGNCSCMD 653
             RFHHF+ G CSC D
Sbjct: 852 SNRFHHFKDGLCSCRD 867



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 195/423 (46%), Gaps = 53/423 (12%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           V  L  + K+++  K++H+ ++  G+  D    +KL   +  C       L   R++FD+
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCG-----DLVQGRKIFDK 154

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I    ++ WN L+  Y+      +S  +F ++        N +TF  V+K  A L + + 
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKM-QKLGVVGNCYTFTCVLKCFAALGKVKE 213

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + +HG V+K  F  +  + NSLI  Y   G +  A+ +F  + + DVVSWNSMI+G V 
Sbjct: 214 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            GF    +E++ +M +  V+ D  T+V+VL ACA   +L  GR                 
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGR----------------- 316

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                     +H    K         + +L+DMY+KCGNL+ A 
Sbjct: 317 -------------------------ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 351

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           EVF  +    +  W+++IA +   G   +A+ LF  MQ   V+P+  T T+++ AC+ S 
Sbjct: 352 EVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 411

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            +D+GR   + +    G+   +     +++M  + G ++EA     K+P+    S W  +
Sbjct: 412 SLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTM 469

Query: 458 LGA 460
           +G 
Sbjct: 470 IGG 472



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 19/266 (7%)

Query: 39  HPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFD-PYSAS--KLFTPCALGTFSSLEYAR 92
           + V S++  C    ++ + + +H+ +++ G+  + P + +   ++  C      S+E AR
Sbjct: 398 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-----SVEEAR 452

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +F +IP  ++ +WNT+I  YS +  P ++  +FL +     + P++ T   V+ A A L
Sbjct: 453 LVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM--QKQFKPDDITMACVLPACAGL 510

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ IHG +++  +  DL ++ +L+  YA CG L +A  +F MI KKD++SW  MI
Sbjct: 511 AALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMI 570

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           +G+   GF  +AI  + EM +  ++PDE +  A+L+AC+    L      NE    F+ +
Sbjct: 571 AGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLL------NEGWKFFNSM 624

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAM 298
           +    V P    +  V+   A++G +
Sbjct: 625 RNECGVEPKLEHYACVVDLLARMGNL 650



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           ++ SVL  CA+  +++ G ++H+ +   GI ++  L   L+ MY  CG+L +  ++F  +
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            +  VF+W+ +++ +A  G  RE++ LF +MQ+  V  N  TFT VL   +  G V E +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 404 MFFNQMEPVYGVV--PGVKHYTCMVDMLGRA----GLLDEAVEFIEKMPIVPGASVWGAL 457
                   V+G V   G    T +V+ L  A    G ++ A    +++   P    W ++
Sbjct: 216 -------RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSM 267

Query: 458 LGACKIH 464
           +  C ++
Sbjct: 268 INGCVVN 274


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 346/605 (57%), Gaps = 53/605 (8%)

Query: 51  IKQLKQIHTQMLRTGL---FFDP-YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           + Q+ QI  Q++ + +     DP   A KL   CA    +++  A  +F  +  PN++  
Sbjct: 1   MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACA--DHANVRQAALIFAHLASPNIFAH 58

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN--EFTFPFVIKAAARLVQFRVGQAIHGM 164
           N  ++A + ++    +   F   V +SP  PN  EFTF  V+KA A L     GQ IH M
Sbjct: 59  NATLKALAQNSHWFHAIQFFNHQV-SSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAM 117

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFE 222
           V K  FE +LF+ NSLI  Y   G L +A  +F  + +  ++VV WN+MI+G+ Q   + 
Sbjct: 118 VTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYS 177

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            AIE++R M+                        +FG                  V P++
Sbjct: 178 DAIEVFRMMQ------------------------QFG-----------------GVVPND 196

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
            T VSVL ACA LGA+D+G  I   + ++ + L  +L  +L DMY KCG + +A  VF+ 
Sbjct: 197 VTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNK 256

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ RDV  WS +I G AMYG   EA   F  M +   KPN V F  +L AC+H+GLV +G
Sbjct: 257 MEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKG 316

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              FN M+  YGV P V+HY C+VD+L RAG LD+A + I  MP+ P   +WGALLG C+
Sbjct: 317 LNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCR 376

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           I+ +    +    H+LEL+ ++ G+ V L+N+Y+  G+ D+ ++ R  MR +G+ K PGC
Sbjct: 377 IYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGC 436

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IEV+  +H+F  G+ SHP   +IYS + E++ ++K  GY P    ++  ++EE+ +E 
Sbjct: 437 SWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEE-KED 495

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           AL++HSE+LAIA+GLIS      IR+VKNLR+C DCH  AK+IS +  REI++RDR RFH
Sbjct: 496 ALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFH 555

Query: 643 HFRGG 647
           HF+ G
Sbjct: 556 HFKDG 560


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 368/608 (60%), Gaps = 40/608 (6%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQ 97
           +PV S++ +CK++ +L+QIH QM++T L    ++ S+L   C+L G    L+YA  +F +
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSR 66

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFR 156
           I  PN + +  LI+ +S ++ P++S +++ +++    Y    EF+ P V+KA  +L+ F 
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFD 126

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG V+K+    D F+ NS++  Y   G++ +A  VF  +  +DVVSWNSMI+G++
Sbjct: 127 EGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL 186

Query: 217 QGGFFEKAIELYREMEMENV---------------------------KPDEVTMVAVLSA 249
           + G  E A EL+ EM   ++                             D VT  +++SA
Sbjct: 187 KAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISA 246

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
             +       R P +AL +F E+ LS  + PD    VSVLSA A LG ++ G  +HA + 
Sbjct: 247 YVQN------RCPMKALDLFREM-LSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 299

Query: 310 KQGIKLNC-YLTTSLIDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREA 367
              I+L+  ++ ++LIDMY+KCG ++ A  VF ++   R++  W++MI+G A++G  REA
Sbjct: 300 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 359

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           LD+F  M+   ++PN +TF  +L  CSH GLV+EG+ +F  M   Y +VP ++HY CM+D
Sbjct: 360 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 419

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           + GRAG L++A+  I+ MP       W A+L A   H ++E+ + A    +EL P++  +
Sbjct: 420 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 479

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG-ESSHPLCKE 546
            VLLSNIYAK G+WD+V+++R  MR  G+KK  GCSS+ VBG++H+FL G E       +
Sbjct: 480 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYSGQ 539

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           + +K+ E+V+RLK  GY P+ + +L  +E+E  +E  LNLHSE++A A+GLI +  S PI
Sbjct: 540 VLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEG-KESLLNLHSEKMAXAFGLIHINKSAPI 598

Query: 607 RIVKNLRV 614
            IVKNLR+
Sbjct: 599 HIVKNLRI 606


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 340/609 (55%), Gaps = 43/609 (7%)

Query: 58  HTQMLRTGLFFDPYSASK------LFTPCALGTF----SSLEYAREMFDQIPQPNLYTWN 107
           H +MLRTG     Y+          F   AL         +   R +FD +    +  WN
Sbjct: 227 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 286

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            +I  YS +    ++ ++F+ +  ++    N  T   V+ A  R   F   +AIHG V+K
Sbjct: 287 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 346

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
              + D F+ N+L+  Y+  G + +A  +F  +  +D+V+WN+MI+G+V     E A+ L
Sbjct: 347 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 406

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
             +M+    K         +S  A +  L+                      P+  T ++
Sbjct: 407 LHKMQNLERK---------VSKGASRVSLK----------------------PNSITLMT 435

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L +CA L A+  G +IHA   K  +  +  + ++L+DMY KCG L  + +VF  +  ++
Sbjct: 436 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN 495

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+ +I  + M+G G+EA+DL   M    VKPN VTF +V  ACSHSG+VDEG   F 
Sbjct: 496 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 555

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASVWGALLGACKIHEN 466
            M+P YGV P   HY C+VD+LGRAG + EA + +  MP     A  W +LLGA +IH N
Sbjct: 556 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 615

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           +E+ E A  +L++LEP      VLL+NIY+  G WD  +E+R++M+  G++KEPGCS IE
Sbjct: 616 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
              E+HKF+AG+SSHP  +++   L+ +  R++  GYVP+ S +L  V EED +E  L  
Sbjct: 676 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNV-EEDEKEILLCG 734

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+G+++  P   IR+ KNLRVC DCH   K ISK+ +REI+LRD  RFH F+ 
Sbjct: 735 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 794

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 795 GTCSCGDYW 803



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 191/421 (45%), Gaps = 74/421 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK----LFTPCALGTFSSLEYAREMF 95
           +L+K   +++ +   KQIH  + + G   D  + +     L+  C  G F ++    ++F
Sbjct: 15  ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC--GDFGAV---YKVF 69

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ- 154
           D+I + N  +WN+LI +  S  +   +   F + + +    P+ FT   V+ A + L   
Sbjct: 70  DRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMP 128

Query: 155 --FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ +H   ++   E + FI N+L+  Y   G LA +  +    G +D+V+WN+++
Sbjct: 129 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 187

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           S                                  S C  ++ LE       AL    E+
Sbjct: 188 S----------------------------------SLCQNEQLLE-------ALEYLREM 206

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCG 331
            L + V PDEFT  SVL AC+ L  +  G ++HA   K G +  N ++ ++L+DMY  C 
Sbjct: 207 VL-EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 265

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVL 390
            +     VF  +  R + +W+ MIAG++     +EAL LF  M+E A +  N+ T   V+
Sbjct: 266 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 325

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVV--PGVKH----YTCMVDMLGRAGLLDEAVEFIEK 444
            AC  SG        F++ E ++G V   G+         ++DM  R G +D A+    K
Sbjct: 326 PACVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 378

Query: 445 M 445
           M
Sbjct: 379 M 379



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 20/268 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + IH  +++ GL  D +  + L           ++ A  +F ++   +L TWNT+I  Y 
Sbjct: 338 EAIHGFVVKRGLDRDRFVQNTLMD--MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 395

Query: 115 SSAEPIQSFMIFLQLVYN-----------SPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            S E  +  ++ L  + N               PN  T   ++ + A L     G+ IH 
Sbjct: 396 FS-EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 454

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
             IK++   D+ + ++L+  YA CG L M+  VF  I +K+V++WN +I  +   G  ++
Sbjct: 455 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQE 514

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AI+L R M ++ VKP+EVT ++V +AC+    ++      E L IF+ ++    V P   
Sbjct: 515 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD------EGLRIFYVMKPDYGVEPSSD 568

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            +  V+    + G +    Q+   M + 
Sbjct: 569 HYACVVDLLGRAGRIKEAYQLMNMMPRD 596



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKA 336
           + PD + F ++L A A L  M++G QIHA + K G  ++   +  +L+++Y KCG+    
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  R+   W+++I+    +     AL+ F  M +  V+P++ T  +V+ ACS+ 
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKH---YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
            +  EG M   Q+   YG+  G  +      +V M G+ G L  +   +           
Sbjct: 126 PM-PEGLMMGKQVHA-YGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVT 182

Query: 454 WGALLGA-CKIHENVELAEYACSHLLE-LEPE 483
           W  +L + C+  + +E  EY    +LE +EP+
Sbjct: 183 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/685 (35%), Positives = 369/685 (53%), Gaps = 66/685 (9%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           GH+ +P    +L+K   ++        +H  + + G   D +  + L    A     +++
Sbjct: 131 GHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALID--AYSVRGNVD 188

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            AR +FD I   ++ +W  ++  Y+ +    +S  +F Q+     Y PN FT    +K+ 
Sbjct: 189 VARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG-YKPNNFTISGALKSC 247

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
             L  F VG+++HG  +K  ++ DLF+  +L+  YA  G++  A  +F  + K D++ W+
Sbjct: 248 LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWS 307

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-----------F 258
            MI+ + Q    ++A++L+  M   +V P+  T  +VL ACA    L+           F
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKF 367

Query: 259 GRWPN------------------EALSIFHEL---------------------------- 272
           G   N                   ++ +F EL                            
Sbjct: 368 GLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLF 427

Query: 273 --QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
              L  ++ P E T+ SVL A A L A++ G+QIH+   K     +  +  SLIDMY KC
Sbjct: 428 THMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKC 487

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G ++ A   F  +  RD   W+ MI G++M+G   EAL+LF  MQ    KPN +TF  VL
Sbjct: 488 GRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVL 547

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACS++GL+ +G+  F  M   Y + P ++HYTCMV +LGR G  DEA++ I ++   P 
Sbjct: 548 SACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPS 607

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             VW ALLGAC IH+ V+L      H+LE+EP +    VLLSN+YA  G+WDNV+ +RK+
Sbjct: 608 VMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKY 667

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+   ++KEPG S +E  G +H F  G++SHP  K I + L+ +  + +  GYVP+ + +
Sbjct: 668 MQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAV 727

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L L  ++D +E+ L +HSERLA+AYGLI    S  IRI+KNLR+C DCHTV KLISK+  
Sbjct: 728 L-LDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQ 786

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHFR G CSC DYW
Sbjct: 787 REIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 182/392 (46%), Gaps = 46/392 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H  +L+ G   D ++ + L         +SL+ A ++FD++PQ N  ++ TL + YS
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQS--NSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
              +  Q+    L+ ++   +  N F F  ++K    +    +   +H  V K     D 
Sbjct: 113 RDHQFHQALHFILR-IFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADA 171

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+  +LI  Y++ G++ +A  VF  I  KD+VSW  M++ + +  F+E++++L+ +M + 
Sbjct: 172 FVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             KP+  T+   L +C                                            
Sbjct: 232 GYKPNNFTISGALKSCLG------------------------------------------ 249

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L A ++G  +H    K     + ++  +L+++Y K G +  A  +F  +   D+  WS M
Sbjct: 250 LEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLM 309

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           IA +A     +EALDLF RM++  V PN  TF +VL AC+ S  +D G+   + +   +G
Sbjct: 310 IARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK-FG 368

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +   V     ++D+  + G ++ +++  E++P
Sbjct: 369 LNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/371 (52%), Positives = 264/371 (71%), Gaps = 1/371 (0%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
              +L ACA + A++ G Q+HA + K G +L+  ++  L+DMY KCG ++ A EVF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
             DV  W+ MI+G A +GCG+EA+ LF +M +  VKPN +TF  VL  CSH+GLVDEGR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +F+ M   +G+ P  +HY+CMVD+ GRAG LDEA+ FI +MP+ P ASVWG+LLGAC++H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            N+ELAE A   L+EL PEN G  VLLSNIYA  G+WD+  ++RK M+   +KKEPGCS 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IEV  ++H F+ G+SSHP  +EIY  L+ +  ++K+ GY+PN + +L  VEEE  +E  L
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQ-KEWIL 299

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LAIA+G+IS  P   IR+VKNLRVCGDCHT  K IS++ +REI+LRD +RFHHF
Sbjct: 300 GHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHF 359

Query: 645 RGGNCSCMDYW 655
           + G CSC DYW
Sbjct: 360 KDGQCSCGDYW 370



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 9/192 (4%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++A A +     G+ +H  +IK  FE D+ +SN L+  Y  CG +  A  VF  + + D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V SWN+MISG  Q G  ++A+ L+ +M    VKP+++T V VLS C+    ++ GR    
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGR---- 119

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
             + F  +     ++P    +  ++    + G +D  +    +M    ++ N  +  SL+
Sbjct: 120 --NYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMP---VEPNASVWGSLL 174

Query: 325 DMYTKCGNLDKA 336
                 GN++ A
Sbjct: 175 GACRVHGNIELA 186



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 112/275 (40%), Gaps = 47/275 (17%)

Query: 43  SLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            +++ C ++   +Q KQ+H  +++ G   D   ++ L      G    +E A+E+F ++ 
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVD--MYGKCGRIEDAQEVFSKLL 60

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           +P++ +WN +I   +      ++ ++F Q++  +   PN+ TF  V+   +       G 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQML-QTGVKPNQITFVVVLSGCS-----HAGL 114

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
              G     S   D  IS    H+                         + M+  F + G
Sbjct: 115 VDEGRNYFDSMTRDHGISPKAEHY-------------------------SCMVDLFGRAG 149

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             ++A+    +M +E   P+     ++L AC    ++E      E L     ++L+   N
Sbjct: 150 CLDEALNFINQMPVE---PNASVWGSLLGACRVHGNIELAERAVEQL-----IELTPE-N 200

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
           P  +  +S + A A  G  D   ++   MK + +K
Sbjct: 201 PGTYVLLSNIYAAA--GRWDDAGKVRKMMKDRSVK 233



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
            SK + PD  ++ +++S  AQ G     V +  +M + G+K N      ++   +  G +
Sbjct: 56  FSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLV 115

Query: 334 DKALEVFHTVKSRDVFV------WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           D+    F ++ +RD  +      +S M+  F   GC  EAL+  ++M    V+PNA  + 
Sbjct: 116 DEGRNYFDSM-TRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM---PVEPNASVWG 171

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           ++L AC   G ++       Q+  +    PG   Y  + ++   AG  D+A
Sbjct: 172 SLLGACRVHGNIELAERAVEQLIELTPENPGT--YVLLSNIYAAAGRWDDA 220


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 341/621 (54%), Gaps = 35/621 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLR-TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           S +  C  ++ L   +++H  +L+ + L  + + AS L    A  +   +  AR +FD +
Sbjct: 276 SALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYA--SHERVGVARRVFDMV 333

Query: 99  P--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           P     L  WN ++  Y+ +    ++  +F ++   +   P+E T   V+ A AR   F 
Sbjct: 334 PGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFA 393

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             +A+HG V+K    D+ F+ N+L+  YA  GD+  A  +F  I  +DVVSWN++I+G V
Sbjct: 394 GKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCV 453

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G    A +L REM+ +    D  T                     + ++   E    +
Sbjct: 454 VQGHIHDAFQLVREMQQQGRFTDATT--------------------EDGIAGTDE----E 489

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V P+  T +++L  CA L A   G +IH    +  +  +  + ++L+DMY KCG L  +
Sbjct: 490 PVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALS 549

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSH 395
             VF  +  R+V  W+ +I  + M+G G EA+ LF RM    + KPN VTF   L ACSH
Sbjct: 550 RAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSH 609

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVW 454
           SG+VD G   F+ M+  +GV P    + C VD+LGRAG LDEA   I  M P     S W
Sbjct: 610 SGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAW 669

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            + LGAC++H NV L E A   L +LEP+     VLL NIY+  G W+  SE+R  MR  
Sbjct: 670 SSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQR 729

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+ KEPGCS IE++G IH+F+AGES+HP    +++ +D +  R+++ GY P+ S +L  +
Sbjct: 730 GVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDI 789

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EE + +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK IS++  REI+
Sbjct: 790 EESE-KAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIV 848

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHF  G CSC DYW
Sbjct: 849 LRDVRRFHHFVDGACSCGDYW 869



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 192/468 (41%), Gaps = 87/468 (18%)

Query: 35  QHHPHPVFSLIK-------QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----G 83
           + HP   F+L+          ++++  ++ H   L+ G F D     + F   AL     
Sbjct: 156 EGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNG-FLD---GDERFAFNALLSMYA 211

Query: 84  TFSSLEYAREMFDQI-----PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN 138
               ++ A+ +F  +     P   + TWNT++     S    ++  +   +V      P+
Sbjct: 212 RLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARG-VRPD 270

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIK-SSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
             TF   + A ++L    +G+ +H  V+K S    + F++++L+  YA    + +A  VF
Sbjct: 271 GITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVF 330

Query: 198 VMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEME-NVKPDEVTMVAVLSACAKKR 254
            M+  G + +  WN+M+ G+ Q G  E+A+EL+  ME E  V P E T+  VL ACA+  
Sbjct: 331 DMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSE 390

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                        TF    +             +H  + K+G+ 
Sbjct: 391 -----------------------------TFAGKEA-------------VHGYVLKRGMA 408

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            N ++  +L+D+Y + G+++ A  +F  ++ RDV  W+T+I G  + G   +A  L   M
Sbjct: 409 DNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREM 468

Query: 375 Q------------------EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           Q                  E  V PN VT   +L  C+      +G+         + + 
Sbjct: 469 QQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR-HALD 527

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             +   + +VDM  + G L  +    +++P       W  L+ A  +H
Sbjct: 528 SDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMH 574



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 167/410 (40%), Gaps = 90/410 (21%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF--ISNSLIHFYAICGDLAMAYC 195
           + F  P   K+AA L      ++IHG  ++          ++N+L+  YA CGDL  A  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-KR 254
           +F  +  +D V++NS+I+       +  A++  R+M +E       T+V+VL AC+    
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 255 DLEFGRWPNEALSIFHELQLSKN-VNPDE-FTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
           DL  GR   EA    H   L    ++ DE F F ++LS                      
Sbjct: 178 DLRLGR---EA----HAFALKNGFLDGDERFAFNALLS---------------------- 208

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD-----VFVWSTMIAGFAMYGCGREA 367
                        MY + G +D A  +F +V + D     V  W+TM++     G   EA
Sbjct: 209 -------------MYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEA 255

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR------------------------ 403
           +++   M    V+P+ +TF + L ACS   ++  GR                        
Sbjct: 256 IEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVD 315

Query: 404 MFFNQ-----MEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKMP----IVPG 450
           M+ +         V+ +VPG    +  +  MV    +AG+ +EA+E   +M     +VP 
Sbjct: 316 MYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPS 375

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELE-PENHGALVLLSNIYAKTG 499
            +    +L AC   E     E    ++L+    +N      L ++YA+ G
Sbjct: 376 ETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLG 425


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 321/551 (58%), Gaps = 44/551 (7%)

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WN+LI          +  + F Q + +     +E+T P V+ + A +   +   ++H +
Sbjct: 8   SWNSLILGCVREGFE-EDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           +IK+ FE    ++N+LI  YA  G L  A  VF  +  KDVVSW S+++G+   G +E+A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           I+L                                         F ++++S  V PD+  
Sbjct: 127 IKL-----------------------------------------FCKMRIS-GVYPDQIA 144

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
             SVLSACA+L  MD G QIHA + K G++ +  +  SL+ MY KCG++  A   F  + 
Sbjct: 145 VASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMP 204

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
           +RDV  W+ +I G+A  G G+ +L  + +M     KP+ +TF  +L ACSH+GL+  GR 
Sbjct: 205 TRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRA 264

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +F  M+ VYG+ PG +HY CM+D+LGR+G L EA   + +M + P A VW ALL AC++H
Sbjct: 265 YFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           + +EL E A  +L ELEP N    V+LSN+Y+  GKW++ + +R+ MR  G+ KEPG S 
Sbjct: 325 KELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSW 384

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IE N ++  F++ + +HPL  EIYSK+DEI+  +K  GYVP+ S  L   ++E V+E  L
Sbjct: 385 IETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDE-VKELGL 443

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LA+A+GL++V    PIRI KNLRVCGDCHT  K  SK+Y R I+LRD   FHHF
Sbjct: 444 AYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHF 503

Query: 645 RGGNCSCMDYW 655
             G CSC DYW
Sbjct: 504 TEGRCSCGDYW 514



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 151/329 (45%), Gaps = 36/329 (10%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS---LEYAREMFDQIPQPNLYT 105
           K ++    +H  +++TG     + A KL     +  ++    L+ A  +F ++   ++ +
Sbjct: 55  KVMQNAISVHCLIIKTG-----FEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVS 109

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W +L+  YS +    ++  +F ++  +  Y P++     V+ A A L     GQ IH  +
Sbjct: 110 WTSLVTGYSHNGSYEEAIKLFCKMRISGVY-PDQIAVASVLSACAELTVMDFGQQIHATL 168

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +KS  E  L + NSL+  YA CG +  A   F  +  +DV+SW ++I G+ Q G  + ++
Sbjct: 169 VKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSL 228

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ------------ 273
           + Y +M     KPD +T + +L AC+    L  GR   EA+   + ++            
Sbjct: 229 QFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDL 288

Query: 274 LSKN--------------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
           L ++              V PD   + ++L+AC     +++G ++ AK   +   +N   
Sbjct: 289 LGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELG-EMAAKNLFELEPMNSMP 347

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
              L +MY+  G  + A  +   ++SR +
Sbjct: 348 YVMLSNMYSAAGKWEDAARIRRLMRSRGI 376



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 114/220 (51%), Gaps = 9/220 (4%)

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
           DEV+  +++  C ++       +  +ALS F +++ S+++  DE+T  SVL++ A +  M
Sbjct: 5   DEVSWNSLILGCVREG------FEEDALSFFQKMR-SRDMKIDEYTLPSVLNSFASMKVM 57

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
              + +H  + K G +    +  +LIDMY K G LD A+ VF  +  +DV  W++++ G+
Sbjct: 58  QNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGY 117

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           +  G   EA+ LF +M+ + V P+ +   +VL AC+   ++D G+     +    G+   
Sbjct: 118 SHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESS 176

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +     +V M  + G + +A    + MP     S W AL+
Sbjct: 177 LSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVIS-WTALI 215


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 338/616 (54%), Gaps = 49/616 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C         +QIH  M++     D Y A  L    A      L+ A+++FD IP
Sbjct: 308 SILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYA--KHGLLDDAKKVFDWIP 365

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q +L  WN LI   S  A+  ++  +F ++     +  N  T   V+K+ A L      +
Sbjct: 366 QRDLVLWNALISGCSHGAQHAEALSLFCRM-RKEGFDVNRTTLAAVLKSTASLEAISDTR 424

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H +  K  F  D  + N LI  Y  C  L  AY VF   G  D++++ SMI+   Q  
Sbjct: 425 QVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCD 484

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E AI+L+  MEM                                        L K ++
Sbjct: 485 HGEDAIKLF--MEM----------------------------------------LRKGLD 502

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD F   S+L+ACA L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLA 562

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  + V  WS MI G A +G G+ ALD+F RM +  + PN +T T+VLCAC+H+GLV
Sbjct: 563 FSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLV 622

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DE + +FN M+ ++G+    +HY CM+D+LGRAG LD+A+E +  MP    A+VWGALL 
Sbjct: 623 DEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLA 682

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           A ++H + EL   A   L  LEPE  G  VLL+N YA  G WD+V+++RK M+ S +KKE
Sbjct: 683 ASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P  S +E+  ++H F+ G+ SHP  ++IY+KLDE+   +   GYVPN    L  V++ + 
Sbjct: 743 PAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNE- 801

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L+ HSERLA+A+ LIS     PIR+ KNLR+C DCH   K IS + +REI++RD  
Sbjct: 802 KELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDIN 861

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHFR G CSC DYW
Sbjct: 862 RFHHFRDGACSCRDYW 877



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 199/426 (46%), Gaps = 59/426 (13%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLF--FDPYSASKLFTPCAL-GTFSSLEYAREMFD 96
           P+ +     +++ Q   IH  +L++GLF  F  +  S  ++ C L G+      AR +FD
Sbjct: 9   PLLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLS-FYSKCRLPGS------ARRVFD 61

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +IP P   +W++L+ AYS++A P  +   F  +  +     NEF  P V+K A       
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSM-RSCSVRCNEFVLPVVLKCAP---DAG 117

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGF 215
            G  +H + + +    D+F++N+L+  Y   G +  A  VF   G +++ VSWN ++S +
Sbjct: 118 FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+      A++++ EM    V+P+E     V++AC   RDLE GR               
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGR--------------- 222

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                                      ++HA + + G   + +   +L+DMY+K G++  
Sbjct: 223 ---------------------------KVHAMVIRTGYDKDVFTANALVDMYSKLGDIRM 255

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF  V   DV  W+  I+G  ++G  + AL+L  +M+ + + PN  T +++L AC+ 
Sbjct: 256 AAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAG 315

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SG  + GR     M            +  +VDM  + GLLD+A +  + +P      +W 
Sbjct: 316 SGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWN 373

Query: 456 ALLGAC 461
           AL+  C
Sbjct: 374 ALISGC 379



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 159/336 (47%), Gaps = 46/336 (13%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP-QPNLYTWNTLIRAYS 114
           Q+H   + TGL  D + A+ L      G F  ++ AR +FD+   + N  +WN L+ AY 
Sbjct: 121 QLHALAMATGLGGDIFVANALVA--MYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +     +  +F ++V+     PNEF F  V+ A         G+ +H MVI++ ++ D+
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQ-PNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F +N+L+  Y+  GD+ MA  VF  + + DVVSWN+ ISG V  G  + A+EL  +M+  
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
            + P+  T+ ++L ACA                                           
Sbjct: 298 GLVPNVFTLSSILKACAGS----------------------------------------- 316

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
            GA ++G QIH  M K     + Y+   L+DMY K G LD A +VF  +  RD+ +W+ +
Sbjct: 317 -GAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNAL 375

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           I+G +      EAL LF RM++     N  T   VL
Sbjct: 376 ISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 340/609 (55%), Gaps = 43/609 (7%)

Query: 58  HTQMLRTGLFFDPYSASK------LFTPCALGTF----SSLEYAREMFDQIPQPNLYTWN 107
           H +MLRTG     Y+          F   AL         +   R +FD +    +  WN
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 373

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            +I  YS +    ++ ++F+ +  ++    N  T   V+ A  R   F   +AIHG V+K
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 433

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
              + D F+ N+L+  Y+  G + +A  +F  +  +D+V+WN+MI+G+V     E A+ L
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
             +M+    K         +S  A +  L+                      P+  T ++
Sbjct: 494 LHKMQNLERK---------VSKGASRVSLK----------------------PNSITLMT 522

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L +CA L A+  G +IHA   K  +  +  + ++L+DMY KCG L  + +VF  +  ++
Sbjct: 523 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN 582

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+ +I  + M+G G+EA+DL   M    VKPN VTF +V  ACSHSG+VDEG   F 
Sbjct: 583 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 642

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASVWGALLGACKIHEN 466
            M+P YGV P   HY C+VD+LGRAG + EA + +  MP     A  W +LLGA +IH N
Sbjct: 643 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 702

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           +E+ E A  +L++LEP      VLL+NIY+  G WD  +E+R++M+  G++KEPGCS IE
Sbjct: 703 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
              E+HKF+AG+SSHP  +++   L+ +  R++  GYVP+ S +L  V EED +E  L  
Sbjct: 763 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNV-EEDEKEILLCG 821

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+G+++  P   IR+ KNLRVC DCH   K ISK+ +REI+LRD  RFH F+ 
Sbjct: 822 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 881

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 882 GTCSCGDYW 890



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 191/421 (45%), Gaps = 74/421 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK----LFTPCALGTFSSLEYAREMF 95
           +L+K   +++ +   KQIH  + + G   D  + +     L+  C  G F ++    ++F
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC--GDFGAV---YKVF 156

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ- 154
           D+I + N  +WN+LI +  S  +   +   F + + +    P+ FT   V+ A + L   
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMP 215

Query: 155 --FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ +H   ++   E + FI N+L+  Y   G LA +  +    G +D+V+WN+++
Sbjct: 216 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           S                                  S C  ++ LE       AL    E+
Sbjct: 275 S----------------------------------SLCQNEQLLE-------ALEYLREM 293

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCG 331
            L + V PDEFT  SVL AC+ L  +  G ++HA   K G +  N ++ ++L+DMY  C 
Sbjct: 294 VL-EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVL 390
            +     VF  +  R + +W+ MIAG++     +EAL LF  M+E A +  N+ T   V+
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVV--PGVKH----YTCMVDMLGRAGLLDEAVEFIEK 444
            AC  SG        F++ E ++G V   G+         ++DM  R G +D A+    K
Sbjct: 413 PACVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 445 M 445
           M
Sbjct: 466 M 466



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 20/268 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + IH  +++ GL  D +  + L           ++ A  +F ++   +L TWNT+I  Y 
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMD--MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 115 SSAEPIQSFMIFLQLVYN-----------SPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            S E  +  ++ L  + N               PN  T   ++ + A L     G+ IH 
Sbjct: 483 FS-EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
             IK++   D+ + ++L+  YA CG L M+  VF  I +K+V++WN +I  +   G  ++
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQE 601

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AI+L R M ++ VKP+EVT ++V +AC+    ++      E L IF+ ++    V P   
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD------EGLRIFYVMKPDYGVEPSSD 655

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            +  V+    + G +    Q+   M + 
Sbjct: 656 HYACVVDLLGRAGRIKEAYQLMNMMPRD 683



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKA 336
           + PD + F ++L A A L  M++G QIHA + K G  ++   +  +L+++Y KCG+    
Sbjct: 93  IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  R+   W+++I+    +     AL+ F  M +  V+P++ T  +V+ ACS+ 
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKH---YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
            +  EG M   Q+   YG+  G  +      +V M G+ G L  +   +           
Sbjct: 213 PM-PEGLMMGKQVH-AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVT 269

Query: 454 WGALLGA-CKIHENVELAEYACSHLLE-LEPE 483
           W  +L + C+  + +E  EY    +LE +EP+
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 340/609 (55%), Gaps = 43/609 (7%)

Query: 58  HTQMLRTGLFFDPYSASK------LFTPCALGTF----SSLEYAREMFDQIPQPNLYTWN 107
           H +MLRTG     Y+          F   AL         +   R +FD +    +  WN
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 373

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            +I  YS +    ++ ++F+ +  ++    N  T   V+ A  R   F   +AIHG V+K
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK 433

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
              + D F+ N+L+  Y+  G + +A  +F  +  +D+V+WN+MI+G+V     E A+ L
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
             +M+    K         +S  A +  L+                      P+  T ++
Sbjct: 494 LHKMQNLERK---------VSKGASRVSLK----------------------PNSITLMT 522

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L +CA L A+  G +IHA   K  +  +  + ++L+DMY KCG L  + +VF  +  ++
Sbjct: 523 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN 582

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+ +I  + M+G G+EA+DL   M    VKPN VTF +V  ACSHSG+VDEG   F 
Sbjct: 583 VITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFY 642

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASVWGALLGACKIHEN 466
            M+P YGV P   HY C+VD+LGRAG + EA + +  MP     A  W +LLGA +IH N
Sbjct: 643 VMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNN 702

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           +E+ E A  +L++LEP      VLL+NIY+  G WD  +E+R++M+  G++KEPGCS IE
Sbjct: 703 LEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
              E+HKF+AG+SSHP  +++   L+ +  R++  GYVP+ S +L  V EED +E  L  
Sbjct: 763 HGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNV-EEDEKEILLCG 821

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+G+++  P   IR+ KNLRVC DCH   K ISK+ +REI+LRD  RFH F+ 
Sbjct: 822 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 881

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 882 GTCSCGDYW 890



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 191/421 (45%), Gaps = 74/421 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK----LFTPCALGTFSSLEYAREMF 95
           +L+K   +++ +   KQIH  + + G   D  + +     L+  C  G F ++    ++F
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC--GDFGAV---YKVF 156

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ- 154
           D+I + N  +WN+LI +  S  +   +   F + + +    P+ FT   V+ A + L   
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMP 215

Query: 155 --FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ +H   ++   E + FI N+L+  Y   G LA +  +    G +D+V+WN+++
Sbjct: 216 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           S                                  S C  ++ LE       AL    E+
Sbjct: 275 S----------------------------------SLCQNEQLLE-------ALEYLREM 293

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCG 331
            L + V PDEFT  SVL AC+ L  +  G ++HA   K G +  N ++ ++L+DMY  C 
Sbjct: 294 VL-EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVL 390
            +     VF  +  R + +W+ MIAG++     +EAL LF  M+E A +  N+ T   V+
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVV--PGVKH----YTCMVDMLGRAGLLDEAVEFIEK 444
            AC  SG        F++ E ++G V   G+         ++DM  R G +D A+    K
Sbjct: 413 PACVRSGA-------FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 445 M 445
           M
Sbjct: 466 M 466



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 20/268 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + IH  +++ GL  D +  + L           ++ A  +F ++   +L TWNT+I  Y 
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMD--MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 115 SSAEPIQSFMIFLQLVYN-----------SPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            S E  +  ++ L  + N               PN  T   ++ + A L     G+ IH 
Sbjct: 483 FS-EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
             IK++   D+ + ++L+  YA CG L M+  VF  I +K+V++WN +I  +   G  ++
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQE 601

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           AI+L R M ++ VKP+EVT ++V +AC+    ++      E L IF+ ++    V P   
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD------EGLRIFYVMKPDYGVEPSSD 655

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            +  V+    + G +    Q+   M + 
Sbjct: 656 HYACVVDLLGRAGRIKEAYQLMNMMPRD 683



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKA 336
           + PD + F ++L A A L  M++G QIHA + K G  ++   +  +L+++Y KCG+    
Sbjct: 93  IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  R+   W+++I+    +     AL+ F  M +  V+P++ T  +V+ ACS+ 
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKH---YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
            +  EG M   Q+   YG+  G  +      +V M G+ G L  +   +           
Sbjct: 213 PM-PEGLMMGKQVH-AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVT 269

Query: 454 WGALLGA-CKIHENVELAEYACSHLLE-LEPE 483
           W  +L + C+  + +E  EY    +LE +EP+
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/676 (34%), Positives = 375/676 (55%), Gaps = 68/676 (10%)

Query: 41   VFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
             F+ + +C      +K+ K++H  +L+ G   +    + L    A   F  +E A  +FD
Sbjct: 472  TFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFD 529

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            ++ +P++ +WN++I     +        IF+Q++       +  T   V+ A A +    
Sbjct: 530  ELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEV-DLTTLVSVLVAWANIGNLS 588

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            +G+A+HG  +K+ F +++  SN+L+  Y+ CG+L  A  VFV +G   +VSW S I+ +V
Sbjct: 589  LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYV 648

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------------- 260
            + G +  AI L+ EM+ + V+PD  T+ +++ ACA    L+ GR                
Sbjct: 649  REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP 708

Query: 261  -------------WPNEALSIFHELQL-------------SKNVNPDE------------ 282
                            EA  +F ++ +             S+N  P+E            
Sbjct: 709  VTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQF 768

Query: 283  ----FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                 T   VL ACA L A+D G +IH  + ++G   + ++  +L+DMY KCG L  A  
Sbjct: 769  KPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQL 828

Query: 339  VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            +F  +  +D+  W+ MIAG+ M+G G EA+  F+ M+ A ++P+  +F+ +L ACSHSGL
Sbjct: 829  LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGL 888

Query: 399  VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            ++EG  FFN M    GV P ++HY C+VD+L R G L +A +FIE MPI P  ++WG LL
Sbjct: 889  LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLL 948

Query: 459  GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
              C+IH +V+LAE    H+ ELEP+N    V+L+N+YA+  KW+ V +LRK M+  G K+
Sbjct: 949  SGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQ 1008

Query: 519  EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
             PGCS IEV G+ + F+AG S HP  K I   L ++  ++++  Y     ++  L+ E+D
Sbjct: 1009 NPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYV--LINEDD 1066

Query: 579  VQEQALNL-HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            ++++ +   HSE+ A+A+G++++ P + +R+ KN RVCGDCH + K +SK   REI+LRD
Sbjct: 1067 MEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRD 1126

Query: 638  RYRFHHFRGGNCSCMD 653
              RFHHF+ G CSC D
Sbjct: 1127 SNRFHHFKDGLCSCRD 1142



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 195/423 (46%), Gaps = 53/423 (12%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           V  L  + K+++  K++H+ ++  G+  D    +KL   +  C       L   R++FD+
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCG-----DLVQGRKIFDK 429

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I    ++ WN L+  Y+      +S  +F ++        N +TF  V+K  A L + + 
Sbjct: 430 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKM-QKLGVVGNCYTFTCVLKCFAALGKVKE 488

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + +HG V+K  F  +  + NSLI  Y   G +  A+ +F  + + DVVSWNSMI+G V 
Sbjct: 489 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            GF    +E++ +M +  V+ D  T+V+VL A           W N              
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA-----------WAN-------------- 583

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                            +G + +G  +H    K         + +L+DMY+KCGNL+ A 
Sbjct: 584 -----------------IGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 626

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           EVF  +    +  W++ IA +   G   +A+ LF  MQ   V+P+  T T+++ AC+ S 
Sbjct: 627 EVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 686

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            +D+GR   + +    G+   +     +++M  + G ++EA     K+P+    S W  +
Sbjct: 687 SLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTM 744

Query: 458 LGA 460
           +G 
Sbjct: 745 IGG 747



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 141/266 (53%), Gaps = 19/266 (7%)

Query: 39  HPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFD-PYSAS--KLFTPCALGTFSSLEYAR 92
           + V S++  C    ++ + + +H+ +++ G+  + P + +   ++  C      S+E AR
Sbjct: 673 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-----SVEEAR 727

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +F +IP  ++ +WNT+I  YS ++ P ++  +FL +     + P++ T   V+ A A L
Sbjct: 728 LVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM--QKQFKPDDITMACVLPACAGL 785

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ IHG +++  +  DL ++ +L+  YA CG L +A  +F MI KKD++SW  MI
Sbjct: 786 AALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMI 845

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           +G+   GF  +AI  + EM +  ++PDE +   +L+AC+    L      NE    F+ +
Sbjct: 846 AGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLL------NEGWKFFNSM 899

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAM 298
           +    V P    +  V+   A++G +
Sbjct: 900 RNECGVEPKLEHYACVVDLLARMGNL 925



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           ++ SVL  CA+  +++ G ++H+ +   GI ++  L   L+ MY  CG+L +  ++F  +
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            +  VF+W+ +++ +A  G  RE++ LF +MQ+  V  N  TFT VL   +  G V E +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 404 MFFNQMEPVYGVV--PGVKHYTCMVDMLGRA----GLLDEAVEFIEKMPIVPGASVWGAL 457
                   V+G V   G    T +V+ L  A    G ++ A    +++   P    W ++
Sbjct: 491 R-------VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSM 542

Query: 458 LGACKIH 464
           +  C ++
Sbjct: 543 INGCVVN 549


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 349/610 (57%), Gaps = 60/610 (9%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H ++LR+G  FD  SA+      A    SSL YA  +      P  +++NT IR+ +
Sbjct: 13  KPLHARLLRSGALFDDPSAAAPLA--ASAANSSLPYAISLLQA--HPTTFSYNTTIRSLA 68

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV------QFRVGQAIHGMVIKS 168
               P  +  ++  ++ N    PN +T+P ++ A ARL+      +   G A+H  + + 
Sbjct: 69  HGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAGTAVHASLFRR 128

Query: 169 SFED-DLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAI 225
             E  D FIS S++ FYA  GDL  A  VF      ++D+  WNS++  ++  G +   +
Sbjct: 129 GLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVL 188

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
            L+R+M                                              V  DE T 
Sbjct: 189 RLFRQM----------------------------------------------VATDEVTL 202

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           ++V+SAC+ LGA+D G   HA   +        L T+L++MY +CG+++ A  VFH +  
Sbjct: 203 LAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLD 262

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +DV  WS MIAG A+ G  R+AL LF+ M+   V P+++T T VL ACSH+G+VDEG+MF
Sbjct: 263 KDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMF 322

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
            + M   Y + P ++HY C+VD+LGRAG L+EA+  IE +P     ++WGALL AC+ H+
Sbjct: 323 LHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHK 382

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           NV++ + A   +L+L+P + GA V LSN YA  GKWD V E+R  M+   + K PG S +
Sbjct: 383 NVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIV 442

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           E++G +++FL+G+ SHP    IY+ LDE+   L   G+ P+   +   ++EED +E  ++
Sbjct: 443 ELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEED-KEVCIS 501

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+A GLIS      IRIVKNLR+C DCH+V K++S++Y+R I++RDR RFHHF+
Sbjct: 502 QHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFK 561

Query: 646 GGNCSCMDYW 655
            G+CSC+DYW
Sbjct: 562 NGSCSCLDYW 571


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 345/602 (57%), Gaps = 53/602 (8%)

Query: 57  IHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           IH Q+++ G   D +  +    L+  C       +  A+ +FD +    + +W ++I  Y
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCG-----HIGVAKVVFDGLYHRTIVSWTSIISGY 230

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           + + + +++  +F Q+  N+   P+      +++A   +     G++IHG VIK   ED+
Sbjct: 231 AQNGKAVEALRMFSQM-RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDE 289

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
             +  SL  FYA CG + +A   F  +   +V+ WN+MISG+ + G  E           
Sbjct: 290 PALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAE----------- 338

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EA+++FH + +S+N+ PD  T  S + A A
Sbjct: 339 ------------------------------EAVNLFHYM-ISRNIKPDSVTVRSAVLASA 367

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           Q+G++++   +   + K     + ++ TSLIDMY KCG+++ A  VF     +DV +WS 
Sbjct: 368 QVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSA 427

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI G+ ++G G EA++L+  M++A V PN VTF  +L AC+HSGLV EG   F+ M+  +
Sbjct: 428 MIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-F 486

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            +VP  +HY+C+VD+LGRAG L EA  FI K+PI PG SVWGALL ACKI+  V L EYA
Sbjct: 487 EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYA 546

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
            + L  L+P N G  V LSN+YA +  WD V+ +R  MR  GL K+ G S IE+NG++  
Sbjct: 547 ANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQA 606

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F  G+ SHP+ KEI+ +L  +  RLK  G+VP    +L  +  E+ +E+ L+ HSER+A+
Sbjct: 607 FHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEE-KEENLSFHSERIAV 665

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           AYGLIS  P   +RI KNLR C +CH+  KLISKL  REI++RD  RFHHF+ G CSC D
Sbjct: 666 AYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGD 725

Query: 654 YW 655
           YW
Sbjct: 726 YW 727



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 203/418 (48%), Gaps = 53/418 (12%)

Query: 30  VNNGHQHHPHPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           VN+ H  +    + SLI    + + L QIH +++ +GL  + +  +KL    +      +
Sbjct: 47  VNHDHCFNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSS--NLGQI 104

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
            YAR++FD+   P+++ WN +IR+YS +     +  ++  + +   + P+ FTFP+V+KA
Sbjct: 105 CYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH-PDGFTFPYVLKA 163

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
              L+ F +   IHG +IK  F  D+F+ N L+  YA CG + +A  VF  +  + +VSW
Sbjct: 164 CTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSW 223

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
            S+ISG+ Q G   +A+ ++ +M    VKPD + +V++L A     DLE GR        
Sbjct: 224 TSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGR-------- 275

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                              IH  + K G++    L  SL   Y 
Sbjct: 276 ----------------------------------SIHGFVIKMGLEDEPALLISLTAFYA 301

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG +  A   F  +K+ +V +W+ MI+G+A  G   EA++LF  M    +KP++VT  +
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361

Query: 389 VLCACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
            + A +  G ++  +   + + +  YG    V   T ++DM  + G    +VEF  ++
Sbjct: 362 AVLASAQVGSLELAQWMDDYVSKSNYGSDIFVN--TSLIDMYAKCG----SVEFARRV 413


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/552 (40%), Positives = 338/552 (61%), Gaps = 14/552 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ AR +  Q P+ N+ +W +LI  YS +  P  +   F   + +    P+E      + 
Sbjct: 185 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCF-NCMLSDGVEPDEVAVIGALS 243

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVV 206
           A ++L     G+ +H +V K   +    +  +LI  YA CGD+A A  VF  +G+ +   
Sbjct: 244 ACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPE 303

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            WN +I G+ + G  + A  L+ +M   +V    +T  ++++       +  GR   +AL
Sbjct: 304 PWNVIIDGYCKLGHVDIARSLFDQMGARDV----ITFNSMITGY-----IHSGRL-RDAL 353

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F +L+    +  D FT VS+L+ACA LGA+  G  +HA ++++ ++ + YL T+L+DM
Sbjct: 354 QLFMQLR-RHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDM 412

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG +D+A  VFH +  RDV  WS MIAG A  G G +AL+ F +M+    +P +VT+
Sbjct: 413 YMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTY 472

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL ACSHS L++EGR  FN+M  ++ + P ++HY CM+D+L R+GLLDEA+  ++ MP
Sbjct: 473 IAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMP 532

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           + P A +W ++L AC++H+N++LA +A  HLL+L PE     V L NIY  + +W     
Sbjct: 533 MQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKR 592

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R  M   G+KK  G SSI V G++HKF+  + SHP   EI + ++EI  RLKS GY P 
Sbjct: 593 IRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPA 652

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +   V+EE+ +EQAL  HSE++AIA+GLIS+ P+ PI I+KNLRVC DCH+  KLIS
Sbjct: 653 TSRIAVDVDEEE-KEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKLIS 711

Query: 627 KLYNREILLRDR 638
           +L+NREI++RDR
Sbjct: 712 QLWNREIIVRDR 723



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 192/432 (44%), Gaps = 47/432 (10%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLF---TPCALGTFSSLEYAREMFDQIPQPNLYT 105
           ++++Q  Q+H  +  +G      SA  L    T C L     L Y   +FD++P P  + 
Sbjct: 10  RSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNC-LSAPRHLRYVLSLFDRLPHPTTFL 68

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            +T +RA   ++      ++ L+ +       + FTF FV +  A      + + +H   
Sbjct: 69  HDTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAAC 128

Query: 166 IKSSFEDDL-FISNSLIHFYAIC-------------------------------GDLAMA 193
           +++        ++N LIH YA                                 G L  A
Sbjct: 129 LRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEA 188

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             + V   +++VVSW S+I+G+ + G    A+  +  M  + V+PDEV ++  LSAC+K 
Sbjct: 189 RRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKL 248

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
           ++LEFGR       + H L   K +   +   V+++   A+ G  DI  Q  A     G 
Sbjct: 249 KNLEFGR-------LLHLLVGKKRIQMTDKLVVTLIDMYAKCG--DIA-QAQAVFDAVGR 298

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
                    +ID Y K G++D A  +F  + +RDV  +++MI G+   G  R+AL LF +
Sbjct: 299 GQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQ 358

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           ++   ++ +  T  ++L AC+  G + +GR     +E    V   V   T +VDM  + G
Sbjct: 359 LRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI-VEEDVYLVTALVDMYMKCG 417

Query: 434 LLDEAVEFIEKM 445
            +DEA     +M
Sbjct: 418 RVDEATAVFHRM 429



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            ++I    + G LD+A  +      R+V  W+++IAG++  G   +A+  F+ M    V+
Sbjct: 173 ATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVE 232

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P+ V     L ACS    ++ GR+  + +     +    K    ++DM  + G + +A  
Sbjct: 233 PDEVAVIGALSACSKLKNLEFGRL-LHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQA 291

Query: 441 FIEKMPIVPGASVWGALL-GACKI 463
             + +        W  ++ G CK+
Sbjct: 292 VFDAVGRGQKPEPWNVIIDGYCKL 315


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/621 (38%), Positives = 352/621 (56%), Gaps = 56/621 (9%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           ++++ C   + ++  +Q+H ++L +GL  D   A++L   +  C L     +  AR +FD
Sbjct: 68  TILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGL-----VSVARRLFD 122

Query: 97  QIP-QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           ++P Q N++ WN LIRAY+       +  ++ +++      P+ FT+P V+KA A L+  
Sbjct: 123 EMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDL 182

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ +H  V+++S+  D+F+   LI  YA CG +  A+ VF     +D V WNSMI+  
Sbjct: 183 GAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAAC 242

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G                                          P EAL++   +  +
Sbjct: 243 GQNGR-----------------------------------------PAEALALCRNMA-A 260

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P   T VS +SA A  GA+  G ++H    ++G      L TSL+DMY K G +  
Sbjct: 261 EGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTV 320

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACS 394
           A  +F  +  R++  W+ MI GF M+G    A +LF RM+ EA+V P+ +TF  VL AC+
Sbjct: 321 ARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACN 380

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H G+V E +  F+ M  VY + P V+HYTC+VD+LG +G   EA + I+ M + P + +W
Sbjct: 381 HGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIW 440

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GALL  CKIH+NVELAE A   L+ELEPE+ G  VLLSNIYA++GKW+  + +RK M   
Sbjct: 441 GALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNR 500

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GLKK   CS IE+ G+ H FL G++SHP   EIY +L+ +   +   GYVP+ + +   V
Sbjct: 501 GLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNV 560

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            E+D +   +  HSERLAIA+GLIS  P   + + KNLRVC DCH V KLIS++  REI+
Sbjct: 561 -EDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREII 619

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  R+HHF  G CSC D+W
Sbjct: 620 IRDVNRYHHFVNGECSCKDHW 640



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 8/182 (4%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
            + ++L +C    A+  G Q+HA++   G+ L+  L T L+D+Y  CG +  A  +F  +
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 344 KSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ +VF+W+ +I  +A  G    A++L+  M     ++P+  T+  VL AC+    +  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 402 GRMFFNQMEPVYGVVPGVKHYTC--MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           GR   ++   V         + C  ++DM  + G +DEA    +    V  A VW +++ 
Sbjct: 185 GREVHDR---VMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDST-TVRDAVVWNSMIA 240

Query: 460 AC 461
           AC
Sbjct: 241 AC 242


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 341/621 (54%), Gaps = 37/621 (5%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           S +  C  ++ L   +++H  +L+   L  + + AS L    A      +  AR +FD +
Sbjct: 287 SALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYA--GNEKVASARRVFDMV 344

Query: 99  PQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           P+P+  L  WN +I  Y+ +    ++  +F ++   +   P+E T   V+ A AR   F 
Sbjct: 345 PEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA 404

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             +A+HG V+K     + F+ N+L+  YA  G++ +A  +F MI  +DVVSWN++I+G V
Sbjct: 405 GKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCV 464

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +A +L  EM++ +  P   +                            E   + 
Sbjct: 465 VQGHAAEAFQLVTEMQLPSPSPSSSSTT--------------------------EEGEAH 498

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
              P+  T +++L  CA L A   G +IH    +  ++ +  + ++L+DMY KCG L  +
Sbjct: 499 RCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAAS 558

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH 395
             VF  +  R+V  W+ +I  + M+G G EA+ LF  M    +  PN VTF   L ACSH
Sbjct: 559 RAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSH 618

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVW 454
           SGLVD G   F+ ME  +GV P    + C+VD+LGRAG LDEA   I  M P     S W
Sbjct: 619 SGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAW 678

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LLGAC++H NVEL E A   L ELEP      VLL NIY+  G WD    +R  MR  
Sbjct: 679 SSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQ 738

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+ KEPGCS IE++G IH+F+AGESSHP   E+++ +D +  R++  GY P+ S +L  V
Sbjct: 739 GVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDV 798

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
            +ED +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK +SK+  R+I+
Sbjct: 799 -DEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIV 857

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHFR G+CSC DYW
Sbjct: 858 LRDVRRFHHFRDGSCSCGDYW 878



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 179/438 (40%), Gaps = 84/438 (19%)

Query: 56  QIHTQMLRTGLFFDPYSA--SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
            +H   LR  L   P  A  + L T  A         A          +  ++N+LI A 
Sbjct: 84  SLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISAL 143

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ---FRVGQAIHGMVIKSSF 170
               +  ++      ++    +  + FT   V+ A + L      R+G+  H   +K  F
Sbjct: 144 CLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGF 203

Query: 171 EDD---LFISNSLIHFYAICGDLAMAYCVFVMI------GKKDVVSWNSMISGFVQGGFF 221
            D+    F  N+L+  YA  G +  A  +F         G  DVV+WN+MIS  VQGG  
Sbjct: 204 LDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRC 263

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            +A+E+  +M                                          +S  V PD
Sbjct: 264 AEAVEVLYDM------------------------------------------VSLGVRPD 281

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
             TF S L AC++L  + +G ++HA  +K   +  N ++ ++L+DMY     +  A  VF
Sbjct: 282 GVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVF 341

Query: 341 HTV--KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSG 397
             V   SR + +W+ MI G+A  G   EAL+LFSRM+ EA   P+  T + VL AC+ S 
Sbjct: 342 DMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARS- 400

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKH--------YTCMVDMLGRAGLLDEA---VEFIEKMP 446
              EG   F   E ++G V  VK            ++DM  R G +D A      I+   
Sbjct: 401 ---EG---FAGKEAMHGYV--VKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRD 452

Query: 447 IVPGASVWGALLGACKIH 464
           +V     W  L+  C + 
Sbjct: 453 VVS----WNTLITGCVVQ 466


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/483 (43%), Positives = 317/483 (65%), Gaps = 12/483 (2%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ N ++  Y   G++A A  VF  +  +D+VSWN+MI G+   G     + + RE+ 
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRG----DVGMAREIF 170

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                 D  +  +++SA AK      GR   EAL ++ E++++  V PD  + VSVLSAC
Sbjct: 171 DGTRDRDAFSWSSMISAYAK------GRCSKEALELWREMRVA-GVAPDCISMVSVLSAC 223

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           + +GA+ IG ++H  ++   ++++  L T+L+DMY KCG+++ +L+VFH +  +DV  WS
Sbjct: 224 SAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWS 283

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +MI G A +G G +AL LFS M    ++PN +TF  VL AC+H GLV++G+ +F+ M  V
Sbjct: 284 SMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDV 343

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +GVVP ++HY CMVD+LGRAG ++EA+E I  M   P   +W  LLGAC+IH+NVE+AE 
Sbjct: 344 HGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEE 403

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A + L  L+P   G  VLLSNIYA+   W+ V+E+RK +R   +++ PG SSIE    +H
Sbjct: 404 AMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVH 463

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           +F++G+ SHP  +EIY  L+E++ RL+  GY P  S +LQ ++E+  +++AL  HSE+LA
Sbjct: 464 EFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQS-KKRALAEHSEKLA 522

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GL+       +RI KNLR C DCH+  KLIS  Y+R++++RDR RFHHF  G CSC 
Sbjct: 523 IAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCK 582

Query: 653 DYW 655
           DYW
Sbjct: 583 DYW 585



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 27/245 (11%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+FD     + ++W+++I AY+      ++  ++ ++   +   P+  +   V+ A +
Sbjct: 166 AREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRV-AGVAPDCISMVSVLSACS 224

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +    +G  +H  V  +  E D+ +  +L+  YA CGD+  +  VF  +  KDV++W+S
Sbjct: 225 AMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSS 284

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI G    G    A+ L+ EM  + ++P+E+T + VL AC     +  G+    ++S  H
Sbjct: 285 MIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVH 344

Query: 271 --------------------------ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
                                     EL  S    PD   + ++L AC     ++I  + 
Sbjct: 345 GVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEA 404

Query: 305 HAKMK 309
            AK+K
Sbjct: 405 MAKLK 409



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 34/220 (15%)

Query: 300 IGVQIHAKMKKQGIKL-NCYLTTSLIDMYTK--CGNLDKALEVFHTVKSRDVFVWSTMIA 356
           +G  +HA+  + G    + ++ T+L++MY K   G +  A   F     RDVF+ + M+A
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
            +   G   EA  +F  M       + V++  ++   +  G V   R  F+         
Sbjct: 125 AYVARGEVAEARKVFDGMS----GRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAF- 179

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKM-------------PIVPGASVWGALLGACKI 463
                ++ M+    +     EA+E   +M              ++   S  GAL    ++
Sbjct: 180 ----SWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
           H  VE      S+ +E++ +   ALV   ++YAK G  +N
Sbjct: 236 HRFVE------SNRVEVDMKLGTALV---DMYAKCGDIEN 266


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/632 (37%), Positives = 358/632 (56%), Gaps = 24/632 (3%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALG 83
           V  G + +P  +   I  C  +K L   K++   M   G+  +    + L   +  C   
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCG-- 272

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
               +   RE+FD+    NL  +NT++  Y       +  ++  +++      P++ T  
Sbjct: 273 ---DMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQR-PDKVTML 328

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
             I A A+L    VG++ H  V ++  E    ISN++I  Y  CG    A  VF  +  K
Sbjct: 329 STIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNK 388

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            VV+WNS+I+G V+ G  E A+ ++ EM   N+    V+   ++ A  +    E      
Sbjct: 389 TVVTWNSLIAGLVRDGELELALRIFGEMPESNL----VSWNTMIGAMVQASMFE------ 438

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EA+ +  E+Q ++ +  D  T V + SAC  LGA+D+   I+  ++K  I ++  L T+L
Sbjct: 439 EAIDLLREMQ-NQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTAL 497

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DM+++CG+   A+ VF  ++ RDV  W+  I   A+ G  + A++LF  M +  VK + 
Sbjct: 498 VDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADD 557

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
             F  +L A SH G VD+GR  F  ME ++GV P + HY CMVD+LGRAGLL+EA + ++
Sbjct: 558 FVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMK 617

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            MPI P   +WG+ L AC+ H+NVE A YA   + +L PE  G  VLLSNIYA  GKW++
Sbjct: 618 SMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWND 677

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V+ +R  M+  G +K  G SSIEV+G I +F +G+ SH    +I   L EI  R+   GY
Sbjct: 678 VARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGY 737

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
           VP+ +++L  V+E++ +E  L+ HSE+LA+AYGLI+     PIR+VKNLR+C DCH+ AK
Sbjct: 738 VPDTTNVLVDVDEQE-KEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAK 796

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L+SKLY REI +RD  R+H F+ G CSC D+W
Sbjct: 797 LVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 229/467 (49%), Gaps = 66/467 (14%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY 71
           ++T   +L +  +P  L           P  S ++ CK + +LKQ+H  ML+ G+F    
Sbjct: 1   MATTTTTLHQSSSPLLLPTTT-----QKPKNSSLQTCKTLIELKQLHCNMLKKGVF---- 51

Query: 72  SASKLFTPCA-LGTFSSLEYAREMF--DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           + +KL   C  +GT  SL YA   F  D+  + +LYT NTLIR Y++S    ++  I+L 
Sbjct: 52  NINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLH 111

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           ++      P+ FTFPF++ A ++++ F  G  +HG+V+K     DLF++NSLIHFYA CG
Sbjct: 112 MIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG 171

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
            + +   VF  + +++VVSW S+I+G+      ++A+ L+ EM    V+P+ VTMV  +S
Sbjct: 172 KVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAIS 231

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK +DLE G+                                          ++   M
Sbjct: 232 ACAKLKDLELGK------------------------------------------KVCNLM 249

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G+K N  +  +L+DMY KCG++    E+F     +++ +++T+++ +  +G   E L
Sbjct: 250 TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVL 309

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-----MFFNQMEPVYGVVPGVKHYT 423
            +   M +   +P+ VT  + + AC+  G +  G+     +F N +E +  +   +    
Sbjct: 310 VVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAI---- 365

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             +DM  + G  + A +  + M        W +L+        +ELA
Sbjct: 366 --IDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELA 409


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 348/624 (55%), Gaps = 53/624 (8%)

Query: 36  HHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           HH   V       +++   +Q+H ++L +GL  D   A+KL   +  C L     + +AR
Sbjct: 63  HHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGL-----VGHAR 117

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +FD +P+ N++ WN LIRAY+       +  ++  +V +    P+ FT+P  +KA A L
Sbjct: 118 RLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMV-DYGVEPDNFTYPLALKACAAL 176

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
           +    G+ +H  V+ + + +D+F+   L+  YA CG +  A  VF  I  +D V WNSMI
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           + + Q G   +A+ L R+M    V P   T+V+ +SA A    L  GR            
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGR------------ 284

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                                         ++H    ++G      L TSL+DMY K G 
Sbjct: 285 ------------------------------ELHGFGWRRGFDRQDKLKTSLVDMYAKSGW 314

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLC 391
           +  A  +F  +  R++  W+ MI G+ M+G   EAL LF++M+ EA+V P+ +TF  VL 
Sbjct: 315 VQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLS 374

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           AC+H G+V E + FF  M  VY + P V+H+TC+VD+LG AG  +EA + I+ MP+ P +
Sbjct: 375 ACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDS 434

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            +WGALL  CKIH+NVEL E A   L+ELEPE+ G  VLLSNIYA++GKW+  + +RK M
Sbjct: 435 GIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLM 494

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
              GLKK  GCS IE+ G+ H FL G++SHP   EIY +L+ +   +   GY+P+   + 
Sbjct: 495 TNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVF 554

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V  +D +   +  HSERLAIA+GLIS      + + KNLRVC DCH V KLIS++  R
Sbjct: 555 HDV-GDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQR 613

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD  R+HHF  G CSC DYW
Sbjct: 614 EIIIRDVNRYHHFVNGECSCKDYW 637


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 316/510 (61%), Gaps = 44/510 (8%)

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG--DLAMAYCVFVMIGKKDV 205
           A+AR+    V  ++H ++ K  FE +  + N+++  YA  G  DL +A  VF  + ++DV
Sbjct: 207 ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 265

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWNSMI+ + Q G   +AI LY +M                                  
Sbjct: 266 VSWNSMIALYAQNGMSAEAIGLYSKM---------------------------------- 291

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                 L +   +  +     +VL ACA  GA+  G +IH ++ + G++ N Y+ TS++D
Sbjct: 292 ------LNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVD 345

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY+KCG ++ A   F  +K +++  WS MI G+ M+G G+EAL++F+ M+ + ++PN +T
Sbjct: 346 MYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYIT 405

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F +VL ACSH+GL+DEGR ++N M+  +G+  GV+HY CMVD+LGRAG LDEA   I++M
Sbjct: 406 FISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM 465

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
            + P A++WGALL AC+IH+NVELAE +   L EL+  N G  VLLSNIYA+   W +V 
Sbjct: 466 KVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVE 525

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R  ++   ++K PG SS E+ G+I+ F  G+ SHP   EIYS L++++ R++  GYVP
Sbjct: 526 RIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVP 585

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           N   +L  ++EE+ +E AL +HSE+LA+A+ L++  P   I I+KNLRVC DCHT  K I
Sbjct: 586 NTGSVLHDLDEEE-KESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFI 644

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +K+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 645 TKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 135/283 (47%), Gaps = 36/283 (12%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
            FS   +  +      +H  + + G   +    + +    A G    LE AR++FD + +
Sbjct: 204 AFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER 263

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQ 159
            ++ +WN++I  Y+ +    ++  ++ +++        N      V+ A A     + G+
Sbjct: 264 -DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK 322

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  V++   E+++++  S++  Y+ CG + MA   F  I +K+++SW++MI+G+   G
Sbjct: 323 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 382

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPN--------------- 263
             ++A+E++ EM+   ++P+ +T ++VL+AC+    L+ GR W N               
Sbjct: 383 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 442

Query: 264 --------------EALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                         EA S+  E++    V PD   + ++LSAC
Sbjct: 443 GCMVDLLGRAGCLDEAYSLIKEMK----VKPDAAIWGALLSAC 481



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 13/189 (6%)

Query: 268 IFHELQLSKNVNP-------DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
           ++H L+L + +         DE   +   SA A++    +   +HA + K G + N  + 
Sbjct: 177 VYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVV 236

Query: 321 TSLIDMYTKCG--NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-- 376
            +++D Y K G  +L+ A +VF T++ RDV  W++MIA +A  G   EA+ L+S+M    
Sbjct: 237 NTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVG 295

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             +K NAV  + VL AC+H+G +  G+   NQ+  + G+   V   T +VDM  + G ++
Sbjct: 296 GGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRM-GLEENVYVGTSIVDMYSKCGRVE 354

Query: 437 EAVEFIEKM 445
            A     K+
Sbjct: 355 MASRAFRKI 363


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 323/549 (58%), Gaps = 44/549 (8%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N++IR Y    + + S  IF  L++     P+  TFP V+KA A+L    VG+ IHG+VI
Sbjct: 58  NSMIRTYLDLNKHLNSLYIF-ALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +  F  D++ S +L+H Y  C  ++ A  +F  + +++ V+WN++I+G+     F KAI+
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            +R M                                          L+    P E T V
Sbjct: 177 AFRGM------------------------------------------LADGAQPSERTVV 194

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
            VLSAC+ LGA + G  IH  +    ++LN ++ T+LIDMY KCG + +  +VF  ++ +
Sbjct: 195 VVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREK 254

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           +V+ W+ +I+G+AM G G  AL  FSRM     KP+ VTF  VLCAC H GLV EGR  F
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQF 314

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M+  +G+ P ++HY CMVD+LGRAGLL+EA+E I+ M I P   +W ALL AC++H N
Sbjct: 315 MSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
            +L EY    L+ELEP N    VLLSNIY++  +W  V +LR  M + G++K PGCSSIE
Sbjct: 375 TKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIE 434

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           +N  +++F+A     P  + IY +LD ++ +LK  GYV      L  +E+E+ +E ++  
Sbjct: 435 INNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEE-KEHSVMY 493

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LA+A+GL++      +RIVKNLR+C DCH   K++S +Y R I++RDR RFHHF  
Sbjct: 494 HSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYE 553

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 554 GFCSCRDYW 562



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 35/283 (12%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           K IH  +++ G   D Y+++ L   +  C      S+  A ++FD++P+ N  TWN LI 
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCL-----SISDASQLFDEMPERNAVTWNALIT 163

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+ + + +++   F  ++ +    P+E T   V+ A + L  F  G+ IH  +  +   
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQ-PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLR 222

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            ++F+  +LI  YA CG +     VF  I +K+V +WN +ISG+   G  + A++ +  M
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS--------IFH------------- 270
            MEN KPDEVT + VL AC  +  +  GRW   ++         I H             
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 271 -----ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
                EL  S ++ PD   + ++L AC   G   +G  I  ++
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRL 385


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/626 (37%), Positives = 345/626 (55%), Gaps = 42/626 (6%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE---YAREMFD 96
           S +  C  ++ L   +++H  +L+     D  +A+       +  ++S E   +AR +FD
Sbjct: 265 SALPACSRLELLGVGREVHAFVLKD----DDLAANSFVASALVDMYASNEQVSHARRVFD 320

Query: 97  QIPQ--PNLYTWNTLIRAYSS-SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
            +P+    L  WN +I  Y+       ++  +F ++   +   P+E T   V+ A AR  
Sbjct: 321 MVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   +A+HG V+K     + F+ N+L+  YA  G +  A+ +F MI  +D+VSWN++I+
Sbjct: 381 VFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLIT 440

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G +  G   +A +L REM++ +      TM+                   +  S+     
Sbjct: 441 GCIVQGLISEAFQLVREMQLPSSAASGETML-----------------EGDDTSVD---- 479

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
             +   P+  T +++L  CA L A   G +IH    +  ++ +  + ++L+DMY KCG L
Sbjct: 480 -GQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCL 538

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCA 392
             A  VF  +  R+V  W+ +I  + M+G G EAL LF RM    +  PN VTF   L A
Sbjct: 539 ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAA 598

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-- 450
           CSHSGLVD G   F  M+  YG  P    + C+VD+LGRAG LDEA   I  M   PG  
Sbjct: 599 CSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSM--APGEH 656

Query: 451 -ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
             S W  +LGAC++H NV+L   A   L ELEP+     VLL NIY+  G W+N +E+R 
Sbjct: 657 QVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRG 716

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR  G+ KEPGCS IE++G IH+F+AGES+HP   ++++ +D +  R++  GYVP+ S 
Sbjct: 717 MMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSC 776

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  V+E + +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK IS++ 
Sbjct: 777 VLHDVDEAE-KAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMV 835

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            REI+LRD  RFHHFR G CSC DYW
Sbjct: 836 GREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 187/456 (41%), Gaps = 94/456 (20%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSA--SKLFTPCA------LGTFSSLEYA 91
           P        ++ +  + IH   LR  L   P  A  + L T  A                
Sbjct: 53  PAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATP 112

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
            ++ D +   +L +   L R +  + + ++  +        + +  + FT   V+ A + 
Sbjct: 113 PDLRDAVSYNSLISALCLFRRWGHALDALRDML--------ADHEVSSFTLVSVLLACSH 164

Query: 152 LVQ--FRVGQAIHGMVIKSSFED---DLFISNSLIHFYAICGDLAMAYCVFVMIGKK--D 204
           L     R+G+  H   +K  F D   + F  N+L+  YA  G +  A  +F   G    D
Sbjct: 165 LADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGD 224

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +V+WN+MIS  VQGG  E+A+++  +M    V+PD VT  + L AC++            
Sbjct: 225 LVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSR------------ 272

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSL 323
                  L+L                       + +G ++HA  +K   +  N ++ ++L
Sbjct: 273 -------LEL-----------------------LGVGREVHAFVLKDDDLAANSFVASAL 302

Query: 324 IDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMY-GCGREALDLFSRMQ-EAKV 379
           +DMY     +  A  VF  V    R + +W+ MI G+A + G   EA++LFSRM+ EA  
Sbjct: 303 VDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGC 362

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH--------YTCMVDMLGR 431
            P+  T   VL AC+ S +       F   E V+G V  VK            ++DM  R
Sbjct: 363 APSETTMAGVLPACARSEV-------FTGKEAVHGYV--VKRDMASNRFVQNALMDMYAR 413

Query: 432 AGLLDEA---VEFIEKMPIVPGASVWGALLGACKIH 464
            G +DEA      I+   IV     W  L+  C + 
Sbjct: 414 LGRMDEAHTIFAMIDLRDIVS----WNTLITGCIVQ 445


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/507 (41%), Positives = 320/507 (63%), Gaps = 14/507 (2%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           +L+++C N+K+L QIH Q+L+ G   +  + S L    A     +L Y R +FD I  PN
Sbjct: 15  ALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPN 74

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQAI 161
              WNT++RAYS+S +P  + +++ Q+++NS P+  N +TFPF++KA + L  F   Q I
Sbjct: 75  TVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPH--NSYTFPFLLKACSALSAFEETQQI 132

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  +IK  F  +++ +NSL+  YAI G++  A+ +F  +  +D+VSWN MI G+++ G  
Sbjct: 133 HAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNL 192

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           + A ++++ M  +NV      +V  +     K          EALS+  ++ L   + PD
Sbjct: 193 DMAYKIFQAMPEKNVISWTTMIVGFVRIGMHK----------EALSLLQQM-LVAGIKPD 241

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
             T    LSACA LGA++ G  IH  ++K  IK++  L   L DMY KCG ++KAL VF 
Sbjct: 242 SITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFS 301

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            ++ + V  W+ +I G A++G GREALD F++MQ+A + PN++TFT +L ACSH+GL +E
Sbjct: 302 KLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEE 361

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+  F  M  VY + P ++HY CMVD++GRAGLL EA EFIE MP+ P A++WGALL AC
Sbjct: 362 GKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNAC 421

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           ++H++ EL +     L+EL+P++ G  + L++IYA  G+W+ V  +R  ++  GL   PG
Sbjct: 422 QLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPG 481

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIY 548
           CSSI +NG +H+F AG+ SHP  +EIY
Sbjct: 482 CSSITLNGVVHEFFAGDGSHPHIQEIY 508


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 323/549 (58%), Gaps = 44/549 (8%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N++IR Y    + + S  IF  L++     P+  TFP V+KA A+L    VG+ IHG+VI
Sbjct: 58  NSMIRTYLDLNKHLNSLYIF-ALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +  F  D++ S +L+H Y  C  ++ A  +F  + +++ V+WN++I+G+     F KAI+
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            +R M                                          L+    P E T V
Sbjct: 177 AFRGM------------------------------------------LADGAQPSERTVV 194

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
            VLSAC+ LGA + G  IH  +    ++LN ++ T+LIDMY KCG + +  +VF  ++ +
Sbjct: 195 VVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREK 254

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           +V+ W+ +I+G+AM G G  AL  FSRM     KP+ VTF  VLCAC H GLV EGR  F
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQF 314

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M+  +G+ P ++HY CMVD+LGRAGLL+EA+E I+ M I P   +W ALL AC++H N
Sbjct: 315 MSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
            +L EY    L+ELEP N    VLLSNIY++  +W  V +LR  M + G++K PGCSSIE
Sbjct: 375 TKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIE 434

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           +N  +++F+A     P  + IY +LD ++ +LK  GYV      L  +E+E+ +E ++  
Sbjct: 435 INNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEE-KEHSVMY 493

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LA+A+GL++      +RIVKNLR+C DCH   K++S +Y R I++RDR RFHHF  
Sbjct: 494 HSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYE 553

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 554 GFCSCRDYW 562



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 35/283 (12%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           K IH  +++ G   D Y+++ L   +  C      S+  A ++FD++P+ N  TWN LI 
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCL-----SISDASQLFDEMPERNAVTWNALIT 163

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+ + + +++   F  ++ +    P+E T   V+ A + L  F  G+ IH  +  +   
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQ-PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLR 222

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            ++F+  +LI  YA CG +     VF  I +K+V +WN +ISG+   G  + A++ +  M
Sbjct: 223 LNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRM 282

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS--------IFH------------- 270
            MEN KPDEVT + VL AC  +  +  GRW   ++         I H             
Sbjct: 283 LMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGL 342

Query: 271 -----ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
                EL  S ++ PD   + ++L AC   G   +G  I  ++
Sbjct: 343 LEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRL 385


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 341/588 (57%), Gaps = 61/588 (10%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           L L+      P    +  ++     L + + G+AIH  +  S+FEDDL + N +++ YA 
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG L  A  +F  +  KD+VSW  +ISG+ Q G   +A+ L+ +M     +P+E T+ ++
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 247 LSACAKK------RDLE---------------------FGRWPN--EALSIFHEL----- 272
           L A          R L                      + RW +  EA  IF+ L     
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 273 -------------------------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                                     L +   P  FT+ SV +ACA  G+++ G  +HA 
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + K G +   Y+  +LIDMY K G++  A +VF  +  +D+  W+++I+G+A +G G EA
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 392

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L LF +M +AKV+PN +TF +VL ACSHSGL+DEG+ +F  M+  + +   V H+  +VD
Sbjct: 393 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVD 451

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LGRAG L+EA +FIE+MPI P A+VWGALLG+C++H+N++L  YA   + EL+P + G 
Sbjct: 452 LLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGP 511

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
            VLLSNIYA  G+  + +++RK M+ SG+KKEP CS +E+  E+H F+A + SHP+ +EI
Sbjct: 512 HVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEI 571

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
               ++I  ++K  GYVP+ SH+L  + ++D +E  L  HSE+LA+A+ ++   P   IR
Sbjct: 572 QRMWEKISGKIKEIGYVPDTSHVLFFMNQQD-RELKLQYHSEKLALAFAVLKTPPGLTIR 630

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           I KN+R+CGDCH+  K  S++  REI++RD  RFHHF  G CSC DYW
Sbjct: 631 IKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/602 (37%), Positives = 355/602 (58%), Gaps = 15/602 (2%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K++H  +++TG+      ++ L      G    ++ A  +F+Q+P  +  +W +++ A +
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLIN--MYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +  P  +  +F  +       P+ + F  ++KA A L   + G+ +H   I S   DD 
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + +SL+  YA CG   +   VF  I  K+ +SW +MISG+ Q G    AI+L+++M ++
Sbjct: 141 VVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVK 200

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN-PDEFTFVSVLSACA 293
           N+    ++  A++S   +      G W  ++  +F E++ SK ++  D F   S++ A A
Sbjct: 201 NL----LSWTALISGLVQS-----GNWV-DSFYLFMEMR-SKGIDIVDPFILSSIIGASA 249

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L  + +G QIH  +   G + + +++ +L+DMY KC ++  A ++F  +  RD+  W++
Sbjct: 250 NLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTS 309

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +I G A +G   EAL L++RM    +KPN VTF  ++ ACSH GLV +GR FFN M   Y
Sbjct: 310 IIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDY 369

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P ++HYTC++D+L R+G L+EA   I+ MP  P  + W ALL AC  H N  +    
Sbjct: 370 GINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRV 429

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             HLL L+PE+    +LLSNIYA    W++VS++R+ M    +KKEPG S I +  E   
Sbjct: 430 ADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQV 489

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           FLAGE+SHP  +EI+  L+E+ A +K  GY+P+ S +L  +E+++ +E+ L  HSERLA+
Sbjct: 490 FLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQE-KERQLFWHSERLAV 548

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           AYGL+   P   + IVKNLRVCGDCHTV K IS +  REI++RD  R+HHF+ G CSC +
Sbjct: 549 AYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNN 608

Query: 654 YW 655
           +W
Sbjct: 609 FW 610



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 52/260 (20%)

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           + ++A AR     +G+ +H  +IK+  +    +SN+LI+ Y  CG +  A  +F  +  +
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           D +SW S+++   Q       + ++  M + + ++PD      ++ ACA           
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAI---------- 117

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                                           LGAM  G Q+HA      +  +  + +S
Sbjct: 118 --------------------------------LGAMKQGKQVHATFIVSPVSDDDVVKSS 145

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+DMY KCG  D    VF ++ S++   W+ MI+G+A  G   +A+ LF +M    VK N
Sbjct: 146 LVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM---PVK-N 201

Query: 383 AVTFTNVLCACSHSGLVDEG 402
            +++T ++     SGLV  G
Sbjct: 202 LLSWTALI-----SGLVQSG 216



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 149/352 (42%), Gaps = 69/352 (19%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            V  L ACA+  +  IG ++H  + K GI     L+ +LI+MY KCG +  AL +F+ + 
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            RD   W++++            L +F  M ++  ++P+   F  ++ AC+  G + +G+
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGK 125

Query: 404 MFFNQMEPVYGVVPGVKH---YTCMVDMLGRAGLLD------------------------ 436
               Q+   + V P        + +VDM  + GL D                        
Sbjct: 126 ----QVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGY 181

Query: 437 -------EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
                  +A++  +KMP+    S W AL+        V+   +  S  L +E  + G  +
Sbjct: 182 AQSGRKLDAIQLFQKMPVKNLLS-WTALISGL-----VQSGNWVDSFYLFMEMRSKGIDI 235

Query: 490 ----LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCK 545
               +LS+I   +           ++ V GL K+  C  I +  E   F++         
Sbjct: 236 VDPFILSSIIGASA----------NLAVLGLGKQIHCLVILLGYESSLFVSNA-----LV 280

Query: 546 EIYSKLDEIVARLKSFGYVPNR-----SHLLQLVEEEDVQEQALNLHSERLA 592
           ++Y+K  +++A  K FG +  R     + ++    +  + E+AL+L++  L+
Sbjct: 281 DMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLS 332


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 353/622 (56%), Gaps = 51/622 (8%)

Query: 39  HPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H   +L+  C + + L+   ++H  M++T      Y  ++L      G    LE AR++ 
Sbjct: 53  HGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLI--FYGKCDCLEDARKVL 110

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++P+ N+ +W  +I  YS +    ++  +F +++  S   PNEFTF  V+ +  R    
Sbjct: 111 DEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMM-RSDGKPNEFTFATVLTSCIRASGL 169

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G+ IHG+++K +++  +F+ +SL+  YA  G +  A  +F  + ++DVVS  ++I+G+
Sbjct: 170 GLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGY 229

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G  E                                         EAL +FH L  S
Sbjct: 230 AQLGLDE-----------------------------------------EALEMFHRLH-S 247

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + ++P+  T+ S+L+A + L  +D G Q H  + ++ +     L  SLIDMY+KCGNL  
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSY 307

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACS 394
           A  +F  +  R    W+ M+ G++ +G GRE L+LF  M+ E +VKP+AVT   VL  CS
Sbjct: 308 ARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 367

Query: 395 HSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           H  + D G   F+ M    YG  PG +HY C+VDMLGRAG +DEA EFI++MP  P A V
Sbjct: 368 HGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGV 427

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            G+LLGAC++H +V++ E     L+E+EPEN G  V+LSN+YA  G+W +V+ +R  M  
Sbjct: 428 LGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQ 487

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
             + KEPG S I+    +H F A + +HP  +E+ +K+ EI  ++K  GYVP+ S +L  
Sbjct: 488 KAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYD 547

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           V+EE  +E+ L  HSE+LA+ +GLI+     PIR+ KNLR+C DCH  AK+ SK++ RE+
Sbjct: 548 VDEEQ-KEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREV 606

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
            LRD+ RFH    G CSC DYW
Sbjct: 607 SLRDKNRFHQIVDGICSCGDYW 628


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/622 (36%), Positives = 354/622 (56%), Gaps = 51/622 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H   +L+  C + + L++   +H  M++T      Y  ++L      G    LE AR++ 
Sbjct: 52  HCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLI--FYGKCDCLEDARKVL 109

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++P+ N+ +W  +I  YS +    ++  +F +++  S   PNEFTF  V+ +  R    
Sbjct: 110 DEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMM-RSDGKPNEFTFATVLTSCIRASGL 168

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G+ IHG+++K +++  +F+ +SL+  YA  G +  A  +F  + ++DVVS  ++I+G+
Sbjct: 169 ALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGY 228

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            Q G  E                                         EAL +F  LQ S
Sbjct: 229 AQLGLDE-----------------------------------------EALEMFQRLQ-S 246

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P+  T+ S+L+A + L  +D G Q H  + ++ +     L  SLIDMY+KCGNL  
Sbjct: 247 EGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSY 306

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACS 394
           A  +F  +  R    W+ M+ G++ +G GRE L+LF  M+ E +VKP+AVT   VL  CS
Sbjct: 307 AQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCS 366

Query: 395 HSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           H  + D G   ++ M    YG+ P  +HY C+VDMLGRAG +DEA EFI++MP  P A V
Sbjct: 367 HGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGV 426

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            G+LLGAC++H +V++ EY    L+E+EPEN G  V+LSN+YA  G+W++V+ +R  M  
Sbjct: 427 LGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQ 486

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
             + KEPG S I+    +H F A + +HP  +E+ +K+ EI  ++K  GYVP+ S +L  
Sbjct: 487 KAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYD 546

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           V+EE  +E+ L  HSE+LA+ +GLI+     PIR+ KNLR+C DCH  AK+ SK++ RE+
Sbjct: 547 VDEEQ-KEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREV 605

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
            LRD+ RFH    G CSC DYW
Sbjct: 606 SLRDKNRFHQIVKGICSCGDYW 627


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 347/619 (56%), Gaps = 50/619 (8%)

Query: 41  VFSLIKQCKNIKQL----KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           + S+++ C ++++     +Q+HT  L+ G+  D + ++ L    + G    +E A  +F 
Sbjct: 401 ITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG--GKMEEAELLFH 458

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
                +L +WN ++  ++ S    ++  +F  L++      ++ TF    KAA  LV+ +
Sbjct: 459 NQDGFDLASWNAMMHGFTVSDNYREALRLF-SLMHERGEKADQITFANAAKAAGCLVRLQ 517

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IH +VIK  F  DLF+ + ++  Y  CG++  A  VF  I                
Sbjct: 518 QGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPS-------------- 563

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
                                PD+V    V+S C +  + E      +AL  +H+++L+ 
Sbjct: 564 ---------------------PDDVAWTTVISGCVENGEEE------QALFTYHQMRLA- 595

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PDE+TF +++ AC+ L A++ G QIHA + K     + ++ TSL+DMY KCGN++ A
Sbjct: 596 GVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDA 655

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  + +R V +W+ MI G A +G   EAL+ F+ M+   V P+ VTF  VL ACSHS
Sbjct: 656 YGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHS 715

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GL  +    F+ M+  YGV P ++HY+C+VD L RAG + EA + +  MP    A+++  
Sbjct: 716 GLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRT 775

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC++  + E  E     L  ++P +  A VLLSNIYA   +W+N    R  M+   +
Sbjct: 776 LLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNV 835

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPG S I++  ++H F+AG+ SH     IY+K++ ++ R+K  GYVP+    L  +EE
Sbjct: 836 KKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEE 895

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E AL+ HSE+LAIAYGL+   PS  +R++KNLRVCGDCH   K IS ++ REI+LR
Sbjct: 896 ED-KESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLR 954

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHFR G CSC DYW
Sbjct: 955 DANRFHHFRSGICSCGDYW 973



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 205/456 (44%), Gaps = 52/456 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN--LYTWNTLIRA 112
           K+ H  ++ +GL  D Y  + L T  A     SL  AR++FD  PQ +  L T+N ++ A
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYA--KCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 113 YSSSAE------PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           Y+ + E        ++F IF +L+  S       T   + K           +A+ G  +
Sbjct: 91  YAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAV 149

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K   + D+F++ +L++ YA    +  A  +F  +  +DVV WN M+  +V+ G  ++ + 
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLG 209

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKK----RDLEFGR-----------------WPN-- 263
           L+       ++PD V++  +L    KK    R+LE  R                 W    
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTL 269

Query: 264 ----------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                     EA+  F ++  S+ V  D  T++ +LS  A L  +++G QIH  + + G 
Sbjct: 270 SSYLQAGEGWEAVDCFRDMIKSR-VPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGW 328

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
                +  S I+MY K G+++ A  +F  +K  D+  W+T+I+G A  G    +L LF  
Sbjct: 329 DQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFID 388

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLG 430
           +  + + P+  T T+VL ACS    ++E      Q+       G+V      T ++D+  
Sbjct: 389 LLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYS 445

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
           + G ++EA            AS W A++    + +N
Sbjct: 446 KGGKMEEAELLFHNQDGFDLAS-WNAMMHGFTVSDN 480



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 173/378 (45%), Gaps = 56/378 (14%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           YA ++F      ++  WN  + +Y  + E  ++   F  ++  S    +  T+  ++   
Sbjct: 249 YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMI-KSRVPCDSLTYIVILSVV 307

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           A L    +G+ IHG V++  ++  + ++NS I+ Y   G +  A  +F  + + D++SWN
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           ++ISG  + G  E ++ L+ ++    + PD+ T+ +VL AC+   +              
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEE-------------- 413

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                               S C       +G Q+H    K GI L+ +++T+LID+Y+K
Sbjct: 414 --------------------SYC-------VGRQVHTCALKAGIVLDSFVSTALIDVYSK 446

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G +++A  +FH     D+  W+ M+ GF +    REAL LFS M E   K + +TF N 
Sbjct: 447 GGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFAN- 505

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVK-HYTCMV-----DMLGRAGLLDEAVEFIE 443
             A   +G +    +   Q + ++ VV  ++ HY   V     DM  + G +  A +   
Sbjct: 506 --AAKAAGCL----VRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFN 559

Query: 444 KMPIVPGASVWGALLGAC 461
           ++P  P    W  ++  C
Sbjct: 560 QIP-SPDDVAWTTVISGC 576



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISG 214
           +G+  H +++ S    D +++N+LI  YA CG L  A  +F +     +D+V++N++++ 
Sbjct: 31  LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +   G            E+ +V+                         +EA  IF  L+ 
Sbjct: 91  YAHTG------------ELHDVEK-----------------------THEAFHIFRLLRQ 115

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  +     T   +   C   G+      +     K G++ + ++  +L+++Y K   + 
Sbjct: 116 SVMLTT-RHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIR 174

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           +A  +F  +  RDV +W+ M+  +   G G E L LFS    + ++P+ V+   +L
Sbjct: 175 EARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 334/616 (54%), Gaps = 49/616 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C         +QIH  M++     D Y    L    A   F  L+ A ++FD + 
Sbjct: 215 SILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF--LDDAMKVFDWMS 272

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +L  WN LI   S      ++F IF  L        N  T   V+K+ A L      +
Sbjct: 273 HRDLILWNALISGCSHGGRHDEAFSIFYGL-RKEGLGVNRTTLAAVLKSTASLEAASATR 331

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H +  K  F  D  + N LI  Y  C  L+ A  VF      D+++  SMI+   Q  
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 391

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E AI+L+ EM                                          L K + 
Sbjct: 392 HGEGAIKLFMEM------------------------------------------LRKGLE 409

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD F   S+L+ACA L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 469

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F ++  R V  WS MI G A +G G+ AL+LF RM +  + PN +T T+VLCAC+H+GLV
Sbjct: 470 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 529

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DE + +FN M+ ++G+    +HY+CM+D+LGRAG LD+A+E +  MP    ASVWGALLG
Sbjct: 530 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLG 589

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           A ++H++ EL + A   L  LEPE  G  VLL+N YA +G W+ V+++RK M+ S +KKE
Sbjct: 590 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P  S +EV  ++H F+ G+ SHP+ KEIYSKLDE+   +   GY+PN    L  ++  + 
Sbjct: 650 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSE- 708

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L+ HSERLA+A+ L+S  P  PIR+ KNLR+C DCH   K IS + +REI++RD  
Sbjct: 709 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDIN 768

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHFR G CSC DYW
Sbjct: 769 RFHHFRDGTCSCGDYW 784



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 54/328 (16%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           NEF  P V+K    +   ++G  +H M + + F  D+F++N+L+  Y   G +  A  VF
Sbjct: 9   NEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 198 VMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
              G +++ VSWN ++S +V                    K D+                
Sbjct: 66  DEAGSERNAVSWNGLMSAYV--------------------KNDQC--------------- 90

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  +A+ +F E+  S  + P EF F  V++AC     +D G Q+HA + + G + +
Sbjct: 91  ------GDAIQVFGEMVWS-GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            +   +L+DMY K G +D A  +F  +   DV  W+ +I+G  + G    A++L  +M+ 
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           + + PN    +++L AC+ +G  D GR    F  +         GV     +VDM  +  
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG----LVDMYAKNH 259

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGAC 461
            LD+A++  + M       +W AL+  C
Sbjct: 260 FLDDAMKVFDWMS-HRDLILWNALISGC 286


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 335/589 (56%), Gaps = 49/589 (8%)

Query: 44  LIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           L+K+C  + +++Q   +H  ++ +  F D +   +            L+ AR MFD++P 
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSH-FLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPT 151

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            ++ TW  LI  +S +  P  + ++F Q++      PN FT   ++KA+        G  
Sbjct: 152 KDMVTWTALIAGFSQNNRPRDALLLFPQML-RLGLQPNHFTLSSLLKASGSEHGLDPGTQ 210

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   +K  ++  +++ ++L+  YA CG +  A   F  +  K  VSWN++ISG  + G 
Sbjct: 211 LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGE 270

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E                                          AL +  ++Q  KN  P
Sbjct: 271 GE-----------------------------------------HALHLLWKMQ-RKNFQP 288

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
             FT+ SV SACA +GA++ G  +HA M K G+KL  ++  +L+DMY K G++D A  VF
Sbjct: 289 THFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVF 348

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +   DV  W+TM+ G A +G G+E LD F +M    ++PN ++F  VL ACSHSGL+D
Sbjct: 349 DRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLD 408

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG  +F  M+  Y V P V HY   VD+LGR GLLD A  FI +MPI P A+VWGALLGA
Sbjct: 409 EGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGA 467

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C++H+N+EL  YA     EL+P + G  +LLSNIYA  G+W +V+++RK M+ SG+KK+P
Sbjct: 468 CRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQP 527

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
            CS +E+   +H F+A + +HP  KEI  K +EI  ++K  GYVP+ SH+L  V++++ +
Sbjct: 528 ACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQE-R 586

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           E+ L  HSE+LA+A+ L++     PIRI KN+RVCGDCH   K +SK+Y
Sbjct: 587 EEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIY 635



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALE 338
           PD   +  +L  C +LG ++ G  +HA +       N   L   +++MY KCG LD A  
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  + ++D+  W+ +IAGF+     R+AL LF +M    ++PN  T +++L A      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +D G    +     YG    V   + +VDM  R G +D A    + MP     S W AL+
Sbjct: 205 LDPGTQ-LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WNALI 262

Query: 459 GACKIHENVELAEYACSHLLELEPEN----HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
                H      E+A   L +++ +N    H     + +  A  G  +    +  HM  S
Sbjct: 263 SG---HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKS 319

Query: 515 GLK 517
           GLK
Sbjct: 320 GLK 322



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 39/225 (17%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           VFS       ++Q K +H  M+++GL    +  + L    A     S++ A+ +FD++ +
Sbjct: 296 VFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKA--GSIDDAKRVFDRLVK 353

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P++ +WNT++   +      ++   F Q++      PNE +F  V+ A +          
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQML-RIGIEPNEISFLCVLTACSH--------- 403

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNSMISGFVQGG 219
                  S   D+      L+  Y +  D+   Y  FV ++G+                G
Sbjct: 404 -------SGLLDEGLYYFELMKKYKVEPDVPH-YVTFVDLLGRV---------------G 440

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
             ++A    REM +E   P      A+L AC   +++E G +  E
Sbjct: 441 LLDRAERFIREMPIE---PTAAVWGALLGACRMHKNMELGVYAAE 482


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/477 (45%), Positives = 304/477 (63%), Gaps = 10/477 (2%)

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L+H YA+CG L  A  VF      D+V+WN ++ G+ Q G  E   +L R+        D
Sbjct: 117 LVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDE---DLLRDFFARMPSRD 173

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
            V+   VLS C    + +      EA+++F E+  S+   PD  T VSV+SA A LGA+ 
Sbjct: 174 SVSWNTVLSWCVVNGEYD------EAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALA 227

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGF 358
            G+  HA + ++ I++   L+++LI+MY+KCG ++ A+ VF  V   R +  W+ M+AGF
Sbjct: 228 HGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGF 287

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
              G    AL+LF+RM+  ++ PN +TF  VL ACSH GLV+EG  +F +M   YG+ P 
Sbjct: 288 TANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPD 347

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           + HY CMVD+  RAG+ ++A E I+ MP+ P AS+  ALLGAC+ H+N+EL +     L+
Sbjct: 348 IAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLI 407

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           E    +H   VLLSNIYA  G W  V ++RK M   G+ K PG SS+E+NG IH+F++G+
Sbjct: 408 EAAANDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGD 467

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
            SH   ++IY  L EI  +LKS GY P+ S +L  +++EDV+E +L LHSE+LAIA+GLI
Sbjct: 468 KSHSRKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLI 527

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S  P  PIR+V NLR+CGDCH   KLISK+Y R I++RD  RFHHFR G+CSC DYW
Sbjct: 528 STAPGTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 7/191 (3%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R+ F ++P  +  +WNT++     + E  ++  +F +++ +    P+  T   V+ A A 
Sbjct: 163 RDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAY 222

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNS 210
           L     G   H  V +   E +  +S++LI+ Y+ CG +  A  VF  + GK+ + +WN+
Sbjct: 223 LGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNA 282

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M++GF   G+ E+A+EL+  ME   + P+++T   VL+AC+       G    E +  F 
Sbjct: 283 MLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSH------GGLVEEGMKYFQ 336

Query: 271 ELQLSKNVNPD 281
            +     + PD
Sbjct: 337 RMSRFYGIEPD 347



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLT 320
           P+ AL +F  L L    +PD   +    ++CA+        Q+HA   K+G +  +  + 
Sbjct: 56  PHLALRLFDHL-LRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVR 114

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL-DLFSRMQEAKV 379
             L+  Y  CG L  A  VF      D+  W+ ++ G+A  G   + L D F+RM     
Sbjct: 115 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSR-- 172

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
             ++V++  VL  C  +G  DE    F +M
Sbjct: 173 --DSVSWNTVLSWCVVNGEYDEAIAVFREM 200


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 320/523 (61%), Gaps = 24/523 (4%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFD 96
           P P+ S  +   +I +L Q H  +L++GL    ++AS+L    +  + + ++ YA  +F 
Sbjct: 7   PPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFS 66

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +IP PN Y WNT+IRAY++S  P  +  IF Q+++ S   P+++TF F +K+        
Sbjct: 67  RIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVE 125

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG V+K+   DDLFI N+LIH YA CG +  A  +   + ++DVVSWN+++S + 
Sbjct: 126 EGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYA 185

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLS-ACAKKRDLEFGRWP------------- 262
           + G  E A  L+ EM   NV+     +   +     ++    FG  P             
Sbjct: 186 ERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITG 245

Query: 263 -------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                  +E L +F ++Q    V PD  T VSVLSACA +GA+  G  +HA + K GI +
Sbjct: 246 YSHAGRFSEVLVLFEDMQ-HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISI 304

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + ++ T+L+DMY+KCG+++KALEVF++   +D+  W+++I+G + +G G+ AL +FS M 
Sbjct: 305 DGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML 364

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
               KPN VTF  VL ACS +GL+DEGR  FN M  V+G+ P ++HY CMVD+LGR GLL
Sbjct: 365 VEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLL 424

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           +EA E ++KMP    + VW +LLGAC+ H NVELAE     LLEL P+   + V LSN+Y
Sbjct: 425 EEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMY 484

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           A  G+W +V E+R+ MR  G++K+PGCS IEV+G +++FLAGE
Sbjct: 485 ASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/578 (41%), Positives = 332/578 (57%), Gaps = 63/578 (10%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+ FTFPF+IKA + L  F  G  IH  V+K  ++  +FISNSLI  Y  C    ++  V
Sbjct: 8   PDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQV 67

Query: 197 FVMIGKKDVVSWNSMISGFVQG-----GF---------------------------FEKA 224
           F  +  K+ VSW+++I   +Q      GF                            E+A
Sbjct: 68  FDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHEEA 127

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W---------- 261
            ++YR +    +  D+    A     A+   +E  R             W          
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 262 --PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
             P EAL +  ++ L + + PD  T + V+ AC+ L +  +   +H  +   G   N  L
Sbjct: 188 DMPLEALGLLKQMML-QGIFPDAITLLGVIRACSTLASFQLAHIVHGIITT-GFFYNQLL 245

Query: 320 T--TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
              T+LID+Y KCG+L  A +VF  ++ R++  WS MI+G+ M+G GREAL+LF +M+ A
Sbjct: 246 AVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK-A 304

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            VKP+ +TF ++L ACSHSGLV EG   FN M   +GV P  +HY CMVD+LGRAG LDE
Sbjct: 305 SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDE 364

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A +FIE+MP+ P A+VWGALLGAC+IH NV+LAE     L +L+P N G  V+L NIY  
Sbjct: 365 ACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTL 424

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
           TGK      +R  M+  G+KK  G S IE+  +++ F+AG+ SHP    IYS+L+ ++ R
Sbjct: 425 TGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDR 484

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           ++  GY P+ + +L  V+EE  +E  L LHSE+LAI +GL+++ P   IRI KNLRVCGD
Sbjct: 485 IRQEGYTPDINFVLHDVDEE-TKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGD 543

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CHT  K ISK+  REI++RD +RFHHF+ G CSC DYW
Sbjct: 544 CHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 114/204 (55%), Gaps = 11/204 (5%)

Query: 52  KQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           ++   ++  ++  GL FD     +A+ +F  C       +E AR++FD I   +L TW T
Sbjct: 125 EEADDVYRVVVENGLDFDQSVQSAAAGMFARCG-----RVEVARKLFDGIMSKDLVTWAT 179

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
            I AY  +  P+++  +  Q++     FP+  T   VI+A + L  F++   +HG++   
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQG-IFPDAITLLGVIRACSTLASFQLAHIVHGIITTG 238

Query: 169 SFEDDLF-ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
            F + L  +  +LI  Y  CG L  A  VF  + ++++++W++MISG+   G+  +A+ L
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 228 YREMEMENVKPDEVTMVAVLSACA 251
           + +M+  +VKPD +T V++LSAC+
Sbjct: 299 FDQMK-ASVKPDHITFVSILSACS 321



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L   + PD FTF  ++ AC+ L   + G++IH  + K G +   +++ SLI MY KC   
Sbjct: 2   LRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKY 61

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-CA 392
           + + +VF  +  ++   WS +I         +E   LF +M     +P+     N + C 
Sbjct: 62  ELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACV 121

Query: 393 CSH 395
            SH
Sbjct: 122 RSH 124


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 340/618 (55%), Gaps = 52/618 (8%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           V   + + + +K    I    L+ G  FD Y  + L   F+ C       ++ AR +F  
Sbjct: 210 VLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKC-----EDVDTARLLFGM 264

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I +P+L ++N LI  +S + E   +   F +L+ +     +  T   +I  ++      +
Sbjct: 265 IRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSS-TMVGLIPVSSPFGHLHL 323

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
              I G  +KS       +S +L   Y+   ++ +A  +F    +K V +WN+MISG+ Q
Sbjct: 324 ACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQ 383

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  E AI                                         S+F E+ ++  
Sbjct: 384 SGLTEMAI-----------------------------------------SLFQEM-MTTE 401

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P+  T  S+LSACAQLGA+  G  +H  +K + ++ N Y++T+LIDMY KCGN+ +A 
Sbjct: 402 FTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEAS 461

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           ++F     ++   W+TMI G+ ++G G EAL LF+ M     +P++VTF +VL ACSH+G
Sbjct: 462 QLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAG 521

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV EG   F+ M   Y + P  +HY CMVD+LGRAG L++A+EFI KMP+ PG +VWG L
Sbjct: 522 LVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTL 581

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC IH++  LA  A   L EL+P N G  VLLSNIY+    +   + +R+ ++   L 
Sbjct: 582 LGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLS 641

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PGC+ IEVNG  H F+ G+ SH     IY+KL+E+  +++  GY       L  VEEE
Sbjct: 642 KTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEE 701

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E   N+HSE+LAIA+GLI+ EP   IRI+KNLRVC DCH   K ISK+  R I++RD
Sbjct: 702 E-KELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRD 760

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 761 ANRFHHFKDGICSCGDYW 778



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 204/464 (43%), Gaps = 66/464 (14%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           + + +LI +      L + H Q++R G   D  + +KL     L    +  +AR +F  +
Sbjct: 9   NTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQK--LFDVGATRHARALFFSV 66

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+P+++ +N LI+ +S S +   S   +  L+ N+   P+ FT+ F I A+       +G
Sbjct: 67  PKPDIFLFNVLIKGFSFSPDA-SSISFYTHLLKNTTLSPDNFTYAFAISASP---DDNLG 122

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +H   +   F+ +LF++++L+  Y     +A A  VF  +  +D V WN+MI+G V+ 
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP---------------- 262
             ++ +++++++M  + V+ D  T+  VL A A+ ++++ G                   
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 263 NEALSIFHELQLSKNV--------NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
              +S+F + +              PD  ++ +++S  +  G  +  V+   ++   G +
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 315 LNCYLTTSLIDMYTKCGNL-----------------------------------DKALEV 339
           ++      LI + +  G+L                                   D A ++
Sbjct: 303 VSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL 362

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F     + V  W+ MI+G+A  G    A+ LF  M   +  PN VT T++L AC+  G +
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGAL 422

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
             G+   +Q+     +   +   T ++DM  + G + EA +  +
Sbjct: 423 SFGKS-VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD 465


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/500 (42%), Positives = 314/500 (62%), Gaps = 13/500 (2%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
           +G  +H + +K+    DL++ N+L HFY +CGD+     VF  + + +DVV+WN++++G+
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+ G    A E++ EM +     DEV+   ++    K+ +L+       AL +F ++ + 
Sbjct: 208 VRAGMVRAAREVFEEMPVR----DEVSWSTLVGGYVKEGELDV------ALGVFRDM-VE 256

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           K V  +E   V+ LSA AQ+G ++ G  +H  +++ G+ ++  +  +L+DM++KCG +  
Sbjct: 257 KGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAV 316

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A EVF  +  RDVF W+ MI G A +G G++A++LF R  +  + P  +TF  VL ACS 
Sbjct: 317 AREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSR 376

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV EGR +F  M   Y + P ++HY CMVD+LGRAGL+ EA+E IE M I P   +WG
Sbjct: 377 CGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWG 436

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            +L ACK H  V+L     + L+ELEP + G  VLL++IYAK  KWD V E+RK M   G
Sbjct: 437 TVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRG 496

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
             K  G S +E  G +HKFL G+  H    +IY+ LD I  RL   GYVP+ S +L  + 
Sbjct: 497 TGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIG 556

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E+ +  A+ +HSERLAIAYG I  E   PIRIVKNL+VCGDCH  +K+++K++NREI++
Sbjct: 557 DEE-KVHAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIV 615

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC+DYW
Sbjct: 616 RDGSRFHHMKEGKCSCLDYW 635



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 39/299 (13%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+F+++P  +  +W+TL+  Y    E   +  +F  +V       NE      + AAA
Sbjct: 216 AREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRV-NEAAVVTALSAAA 274

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           ++     G+ +H +V ++     + +  +L+  ++ CG +A+A  VF  + ++DV +WN+
Sbjct: 275 QMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNA 334

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------- 260
           MI G    G  + A+EL+     E + P ++T V VL+AC++   +  GR          
Sbjct: 335 MICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKY 394

Query: 261 --------------------WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                                 +EA+ +   + ++    PD   + +VLSAC     +D+
Sbjct: 395 RIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIA----PDPVLWGTVLSACKTHNLVDL 450

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV---FVWSTMIA 356
           G+ +  K+ +     + +    L  +Y K    D+  EV   + SR       WS M A
Sbjct: 451 GITVGNKLIELEPAHDGHYVL-LASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEA 508


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/588 (39%), Positives = 327/588 (55%), Gaps = 52/588 (8%)

Query: 72  SASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
            A  LF   +L +    F  L+ A  MFD +P  N+ TW T++ A +S+    Q  + FL
Sbjct: 100 GAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFL 159

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
             +      PN +TF  V+ A           A+H   +K+  + D+F+ +SLI  Y   
Sbjct: 160 VAMRRDGVAPNAYTFSSVLGACTTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKL 216

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           GDL     VF  +  +D+V WNS+I+GF Q G    AIEL+  M                
Sbjct: 217 GDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRM---------------- 260

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                 +D  F                    + ++ T  SVL AC  +  ++ G Q+HA 
Sbjct: 261 ------KDAGF--------------------SSNQGTLTSVLRACTGMVMLEAGRQVHAH 294

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + K    L   L  +L+DMY KCG+L+ A  +FH +  RDV  WSTM++G A  G   EA
Sbjct: 295 VLKYDRDL--ILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEA 352

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L +F  M+   V PN VT   VL ACSH+GLV++G  +F  M+ ++G+ P  +H+ CMVD
Sbjct: 353 LRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVD 412

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LGRAG LDEAVEFI  M + P + +W  LLGAC++H+N  LA YA   +L+LEP++ GA
Sbjct: 413 LLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGA 472

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
            VLLSN YA   +W +  +  K MR  G++KEPG S IE+   +H F+AG+ SHP    I
Sbjct: 473 RVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTI 532

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
             +L+ ++ R+KS GYVP    +LQ +  E  +E  L  HSE++AI +G +     +PIR
Sbjct: 533 IQELNRLIGRIKSLGYVPQTEFVLQDLPTEQ-KEDLLKYHSEKMAIVFGTMHAVDGKPIR 591

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           I+KNLR+CGDCH  AKL+SK   R I++RD  RFHHF+ G CSC DYW
Sbjct: 592 IMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/617 (37%), Positives = 344/617 (55%), Gaps = 45/617 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQIP 99
           V S IK   +  +L QIH  ++RT L   P  + +  +  AL G      Y++  F Q+ 
Sbjct: 6   VISAIKSVSHKTRLLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLS 65

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P +  +NT+IRA S S  P +  +++  +        +  +  F +K+  R +    G 
Sbjct: 66  HPLVSHYNTMIRACSMSDSPQKGLLLYRDM-RRRGIAADPLSSSFAVKSCIRFLYLPGGV 124

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  + K   + D  +  +++  Y++C     A  VF  +  +D V+WN MIS  ++  
Sbjct: 125 QVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNN 184

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK-NV 278
                                           + RD         ALS+F  +Q S    
Sbjct: 185 --------------------------------RTRD---------ALSLFDVMQGSSYKC 203

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD+ T + +L ACA L A++ G +IH  + ++G +    L  SLI MY++CG LDKA E
Sbjct: 204 EPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYE 263

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  + +++V  WS MI+G AM G GREA++ F  M    V P+  TFT VL ACS+SG+
Sbjct: 264 VFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGM 323

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VDEG  FF++M   +GV P V HY CMVD+LGRAGLLD+A + I  M + P +++W  LL
Sbjct: 324 VDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLL 383

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+IH +V L E    HL+EL+ +  G  VLL NIY+  G W+ V+E+RK M+   ++ 
Sbjct: 384 GACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQT 443

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PGCS+IE+ G +H+F+  + SH   +EIY  LDEI  +L+  GYV   S  L  +++++
Sbjct: 444 TPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSELHKMDDKE 503

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +   L+ HSE+LA+A+G+++  P   +R+  NLRVC DCH   KL S +YNR+++LRD 
Sbjct: 504 -KGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDH 562

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFRGG CSC DYW
Sbjct: 563 NRFHHFRGGRCSCSDYW 579


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/657 (35%), Positives = 367/657 (55%), Gaps = 66/657 (10%)

Query: 19  LPRHPNPTTLTVNNG--------------------HQHHPHPVFSLIKQCKNIKQLKQIH 58
           LPR  N ++L+ N                      +++  H +  L  +   + + K  H
Sbjct: 25  LPRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACH 84

Query: 59  TQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE 118
            +++R  L  D    + L    +   F  +E AR++FD + + +L +WNT+I  Y+ +  
Sbjct: 85  GKIIRIDLEGDVTLLNVLINAYSKCGF--VELARQVFDGMLERSLVSWNTMIGLYTRNRM 142

Query: 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISN 178
             ++  IFL++  N  +  +EFT   V+ A          + +H + +K+  + +L++  
Sbjct: 143 ESEALDIFLEM-RNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGT 201

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
           +L+  YA CG +  A  VF  +  K  V+W+SM++G+VQ   +E+A+ LYR         
Sbjct: 202 ALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRR-------- 253

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
                       A++  LE                       ++FT  SV+ AC+ L A+
Sbjct: 254 ------------AQRMSLE----------------------QNQFTLSSVICACSNLAAL 279

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
             G Q+HA + K G   N ++ +S +DMY KCG+L ++  +F  V+ +++ +W+T+I+GF
Sbjct: 280 IEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGF 339

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           A +   +E + LF +MQ+  + PN VTF+++L  C H+GLV+EGR FF  M   YG+ P 
Sbjct: 340 AKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPN 399

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           V HY+CMVD+LGRAGLL EA E I+ +P  P AS+WG+LL +C++++N+ELAE A   L 
Sbjct: 400 VVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLF 459

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           ELEPEN G  VLLSNIYA   +W+ +++ RK +R   +KK  G S I++  ++H F  GE
Sbjct: 460 ELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGE 519

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
           S HP  +EI S LD +V + + FGY P+  H L  VE    +E+ L  HSE+LA+ +GL+
Sbjct: 520 SGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGK-KEELLMQHSEKLALVFGLM 578

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            +  S P+RI+KNLR+C DCH   K  S    R I++RD  RFHHF  G+CSC D+W
Sbjct: 579 CLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/655 (36%), Positives = 358/655 (54%), Gaps = 58/655 (8%)

Query: 5   PPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQM 61
           PP      S P    P   NP   +  + + HH     S+++ C    +++  +Q+H ++
Sbjct: 37  PPNTGFAASPP----PPSTNPRLASSPHAYHHHT----SILQSCVASGSLRAGRQLHGRL 88

Query: 62  LRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           L +GL  D   ++KL    A      + +AR +FD +P+ N++ WN LIRAY+       
Sbjct: 89  LVSGLGPDTVLSTKLVDLYA--ACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREA 146

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           +  ++  +V +    P+ FT+P V+KA A L+    G+ +H  V  + +  D+F+   ++
Sbjct: 147 AVRLYRGMVEHG-VEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVV 205

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
             YA CG +  A  VF  I  +D V WNSMI+ + Q G   +A+ L R+M          
Sbjct: 206 DMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMA--------- 256

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
                                            +  + P   T VS +SA A   A+  G
Sbjct: 257 ---------------------------------ANGIGPTIATLVSAVSAAADAAALPRG 283

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
            ++H    ++G  L   L TSL+DMY K G +  A  +F  +  R++  W+ MI G+ M+
Sbjct: 284 RELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMH 343

Query: 362 GCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
           G   EAL LF++M+ +A+V P+ +TF  VL AC+H G+V+E + FF  M   Y + P V+
Sbjct: 344 GHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQ 403

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HYTC++D+LG  G  +EA + I+ M I P + +WGALL  CKIH+NVEL E A   L+EL
Sbjct: 404 HYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIEL 463

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           EPE+ G  V LSNIYA++GKW+  + +RK M   GLKK   CS IE+ G+ H FL G++S
Sbjct: 464 EPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDAS 523

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HP   EIY +L+ +   +   GYVP+   +   V ++D +   +  HSERLAIA+GLIS 
Sbjct: 524 HPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNV-DDDEKRNMVRSHSERLAIAFGLIST 582

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P   + + KNLRVC DCH V KLIS++  REI++RD  R+HHF  G CSC DYW
Sbjct: 583 PPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 357/631 (56%), Gaps = 34/631 (5%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGT 84
           N G +       S +  C  +  L   KQ+H Q++R+    DPY AS   +L+  C  G 
Sbjct: 287 NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKC--GC 344

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F   + AR +F  +   N  +W  LI  +       +S  +F Q+        ++F    
Sbjct: 345 F---KEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQM-RAELMTVDQFALAT 400

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +I   +  +   + + +H + +KS     + ISNSLI  YA CG+L  A  +F  + ++D
Sbjct: 401 IISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERD 460

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +VSW  M++ + Q G   KA E +  M   NV    +T  A+L A  +    E G     
Sbjct: 461 IVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDG----- 511

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
            L ++  +   K+V PD  T+V++   CA +GA  +G QI     K G+ L+  +  ++I
Sbjct: 512 -LKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVI 570

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY+KCG + +A ++F  +  +D+  W+ MI G++ +G G++A+++F  M +   KP+ +
Sbjct: 571 TMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYI 630

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           ++  VL +CSHSGLV EG+ +F+ ++  + V PG++H++CMVD+L RAG L EA   I++
Sbjct: 631 SYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDE 690

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A VWGALL ACK H N ELAE A  HL +L+  + G  +LL+ IYA  GK  + 
Sbjct: 691 MPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDS 750

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +++RK MR  G+KK PG S +EV  ++H F A + SHP    I  KLDE++ ++   GYV
Sbjct: 751 AQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYV 810

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
              S   ++             HSE+LA+A+G++++    PI I+KNLR+CGDCHTV KL
Sbjct: 811 RTESLRSEI------------HHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKL 858

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IS +  RE ++RD  RFHHF+GG+CSC DYW
Sbjct: 859 ISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 192/406 (47%), Gaps = 42/406 (10%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
             SL  A E+F ++P+ ++ +WNTL+  Y  S   + +   F+ +  +    PN FTF  
Sbjct: 108 LGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGC 167

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
            +K+   L    V   + G++ K  F+ D  ++  ++  +  CG +  A   F  I +  
Sbjct: 168 AMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPT 227

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V   NSM++G+ +    + A+EL+  M   +V    + MV+ LS   + R         E
Sbjct: 228 VFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNM-MVSALSQSGRAR---------E 277

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           ALS+  ++  ++ V  D  T+ S L+ACA+L ++  G Q+HA++ +    ++ Y+ ++++
Sbjct: 278 ALSVAVDMH-NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMV 336

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           ++Y KCG   +A  VF +++ R+   W+ +I GF  YGC  E+L+LF++M+   +  +  
Sbjct: 337 ELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQF 396

Query: 385 TFTNVLCACS-----------HSGLVDEGR----MFFNQMEPVYGVVPGVKH-------- 421
               ++  CS           HS  +  G     +  N +  +Y     +++        
Sbjct: 397 ALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSM 456

Query: 422 -------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                  +T M+    + G + +A EF + M        W A+LGA
Sbjct: 457 EERDIVSWTGMLTAYSQVGNIGKAREFFDGMS-TRNVITWNAMLGA 501



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 179/381 (46%), Gaps = 21/381 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +++A E+F+ +P+ ++ +WN ++ A S S    ++  + + + +N     +  T+   + 
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDM-HNRGVRLDSTTYTSSLT 302

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A+L     G+ +H  VI+S    D +++++++  YA CG    A  VF  +  ++ VS
Sbjct: 303 ACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVS 362

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W  +I GF+Q G F +++EL+ +M  E +  D+  +  ++S C+ + D+   R       
Sbjct: 363 WTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQ------ 416

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
             H L L            S++S  A+ G +     I + M+++ I       T ++  Y
Sbjct: 417 -LHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDI----VSWTGMLTAY 471

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTF 386
           ++ GN+ KA E F  + +R+V  W+ M+  +  +G   + L ++S M  E  V P+ VT+
Sbjct: 472 SQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTY 531

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---VEFIE 443
             +   C+  G    G         V G++        ++ M  + G + EA    +F+ 
Sbjct: 532 VTLFRGCADMGANKLGDQITGHTVKV-GLILDTSVMNAVITMYSKCGRISEARKIFDFLS 590

Query: 444 KMPIVPGASVWGALLGACKIH 464
           +  +V     W A++     H
Sbjct: 591 RKDLVS----WNAMITGYSQH 607



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 57/354 (16%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM-IGKKDVVSWNSMISGFVQGGF 220
           HG ++       +F+ N+L+H Y  CG L  A  +    I + +V++ N M++G+ + G 
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
              A EL+  M   +V      M     +         GR+  +A+  F  ++ S +  P
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQS---------GRFL-DAMESFVSMRRSGDSLP 160

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG--------- 331
           + FTF   + +C  LG  ++ +Q+   + K G + +  + T ++DM+ +CG         
Sbjct: 161 NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQF 220

Query: 332 ----------------------NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
                                  +D ALE+F ++  RDV  W+ M++  +  G  REAL 
Sbjct: 221 SQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALS 280

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVD 427
           +   M    V+ ++ T+T+ L AC+    +  G+    Q   V   +P +  Y  + MV+
Sbjct: 281 VAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQ---VIRSLPCIDPYVASAMVE 337

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC-SHLLEL 480
           +  + G   EA      +      S W  L+G           +Y C S  LEL
Sbjct: 338 LYAKCGCFKEARRVFSSLRDRNTVS-WTVLIGG--------FLQYGCFSESLEL 382



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 34/188 (18%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC------------- 330
                L +C   GA+     +H ++   G+    +L  +L+  Y  C             
Sbjct: 30  ALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGD 89

Query: 331 -------------------GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                              G+L  A E+F  +  RDV  W+T+++G+   G   +A++ F
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149

Query: 372 SRMQEAKVK-PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
             M+ +    PNA TF   + +C   G  +        +   +G        T +VDM  
Sbjct: 150 VSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTK-FGFQGDPDVATGIVDMFV 208

Query: 431 RAGLLDEA 438
           R G +D A
Sbjct: 209 RCGAVDFA 216


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 365/657 (55%), Gaps = 68/657 (10%)

Query: 41   VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
            +  +++ C  +  L   KQIH  + R GL  D    + L +         LE AR +FD 
Sbjct: 778  IVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLIS--MYSKNGKLELARRVFDS 835

Query: 98   IPQPNLYTWNTLIRAY-----------------SSSAEP-----------------IQSF 123
            +   N  +WN++I +Y                 SS  +P                  +  
Sbjct: 836  MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895

Query: 124  MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
            +  LQ +    + PN  +   V++A + L    +G+  HG V+++ F+ D+++  SLI  
Sbjct: 896  LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955

Query: 184  YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
            Y     L  A  VF  +  +++ +WNS++SG+   G FE A+ L  +ME E +KPD VT 
Sbjct: 956  YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 1015

Query: 244  VAVLSA-----CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
              ++S      CA+K  +     PN A                  +   +L ACA L  +
Sbjct: 1016 NGMISGYAMWGCARKAFM-----PNSA------------------SITCLLRACASLSLL 1052

Query: 299  DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
              G +IH    + G   + ++ T+LIDMY+K  +L  A +VF  ++++ +  W+ MI GF
Sbjct: 1053 QKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGF 1112

Query: 359  AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
            A++G G+EA+ +F+ MQ+  V P+A+TFT +L AC +SGL+ EG  +F+ M   Y +VP 
Sbjct: 1113 AIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPR 1172

Query: 419  VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
            ++HY CMVD+LGRAG LDEA + I  MP+ P A++WGALLG+C+IH+N+  AE A  +L 
Sbjct: 1173 LEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLF 1232

Query: 479  ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
            +LEP N    +L+ N+Y+   +W+++  LR+ M  +G++     S I++N  +H F + E
Sbjct: 1233 KLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDE 1292

Query: 539  SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
              HP   +IY +L ++V+ +K  GYVP+ + + Q ++E + Q+  L+ H+E+LAI YGLI
Sbjct: 1293 KPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLS-HTEKLAITYGLI 1351

Query: 599  SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             ++  +PIR++KN R+C DCH+ AK IS +  RE+ LRD  RFHHFR G CSC D+W
Sbjct: 1352 KMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 168/381 (44%), Gaps = 46/381 (12%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           M++    ++P +A+K      LG       A   +  +P+ N   WN+ +  + SSA  +
Sbjct: 597 MIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSFVEEFKSSAGSL 655

Query: 121 QSFM-IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
              + +F +L      F +E  +   +K   R++   +G  IHG +IK  F+ D+++  +
Sbjct: 656 HIVLEVFKELHGKGVVFDSE-VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA 714

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L++FY  C  L  A  VF  +   + + WN  I   +Q    +K +EL+R+M+   +K +
Sbjct: 715 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAE 774

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
             T+V VL AC K                                          +GA++
Sbjct: 775 TATIVRVLQACGK------------------------------------------MGALN 792

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
              QIH  + + G+  +  L   LI MY+K G L+ A  VF ++++R+   W++MI+ +A
Sbjct: 793 AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYA 852

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
             G   +A  LF  ++ + +KP+ VT+  +L      G  +E      +M+   G  P  
Sbjct: 853 ALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG-EGFKPNS 911

Query: 420 KHYTCMVDMLGRAGLLDEAVE 440
              T ++  +   G L+   E
Sbjct: 912 SSMTSVLQAISELGFLNMGKE 932


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/500 (42%), Positives = 311/500 (62%), Gaps = 13/500 (2%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
           +G  +H + +K+    DLF+ N+L+HFY + GD+     VF  + + +DV++WN +++G+
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+ G    A E++ EM +     DE++   ++    K+ +LE       AL +F  + + 
Sbjct: 224 VRAGMMTVAREVFDEMPVR----DEISWSTLVGGYVKEEELEV------ALGVFRNM-VE 272

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + V P++   V+ LSA A+LG ++ G  +H  +++ G+ +   +  +L+DMY KCG +  
Sbjct: 273 QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAV 332

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A EVF  ++ RDVF W+ MI G A +G GR+A++LF R     + P  VTF  VL  CS 
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSR 392

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SGLV EGR +F  +   Y + P ++HY CMVD+LGRAGL+ EA+E IE M I P   +WG
Sbjct: 393 SGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWG 452

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            +L +CK H  V+L     + L+EL+P + G  VLLS IYAK  KWD V E+RK M   G
Sbjct: 453 TILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRG 512

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
             K  G S +E +G++HKFL G++ H    +IY  LD I  RL   GYVP+ S +L  + 
Sbjct: 513 TNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIG 572

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE+ +  A+ +HSERLAIAYG I +E   PIRIVKNLRVCGDCH  +K+++ ++ REI++
Sbjct: 573 EEE-KVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIV 631

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHH + G CSC+DYW
Sbjct: 632 RDGSRFHHMKEGKCSCLDYW 651



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 39/302 (12%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +  ARE+FD++P  +  +W+TL+  Y    E   +  +F  +V      PN+      + 
Sbjct: 229 MTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQG-VRPNQAAVVTALS 287

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           AAARL     G+ +H +V +S     + +  +L+  YA CG +A+A  VF  + ++DV +
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFA 347

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------ 261
           WN+MI G    G    A+EL+     E + P  VT V VL+ C++   +  GR       
Sbjct: 348 WNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIV 407

Query: 262 ------PN------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                 P                   EA+ +   + ++    PD   + ++LS+C   G 
Sbjct: 408 EKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIA----PDPVLWGTILSSCKTHGL 463

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV---FVWSTM 354
           +D+GV +  K+ +     + Y    L  +Y K    D+  EV   + SR       WS M
Sbjct: 464 VDLGVSVGNKLIELDPTHSGYYVL-LSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLM 522

Query: 355 IA 356
            A
Sbjct: 523 EA 524


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 361/639 (56%), Gaps = 49/639 (7%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           KQ  Q H   L++G  +    ++ L   ++ CA  + S L  AR++FD IP+ +  +W T
Sbjct: 166 KQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA-SSPSLLHSARKVFDDIPEKDERSWTT 224

Query: 109 LIRAYSSSA------EPIQSFMIFLQLV-YN---SPYFP--------------------- 137
           ++  Y  +       E ++     ++LV YN   S Y                       
Sbjct: 225 MMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL 284

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF-ISNSLIHFYAICGDLAMAYCV 196
           +EFT+P VI+A A     ++G+ +H  V++   ED  F   NSL+  Y  CG    A  +
Sbjct: 285 DEFTYPSVIRACANARLLQLGKQVHAYVLRR--EDFSFHFDNSLVTLYYKCGKFNEARAI 342

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD+VSWN+++SG+V  G   +A  +++EM+ +N+    ++ + ++S  A+    
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAEN--- 395

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            FG    E L +F  ++  +   P ++ F   + +CA LGA   G Q HA++ K G   +
Sbjct: 396 GFG---EEGLKLFSCMK-REGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSS 451

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
                +LI MY KCG +++A +VF T+   D   W+ +IA    +G G EA+D++  M +
Sbjct: 452 LSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLK 511

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             ++P+ +TF  VL ACSH+GLVD+GR +FN ME VY + PG  HY  ++D+L R+G   
Sbjct: 512 KGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFS 571

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA   IE +P  P A +W ALL  C++H N+EL   A   L  L PE+ G  +LLSN+YA
Sbjct: 572 EAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYA 631

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            TG+W+ V+ +RK MR  G+KKE  CS IE+  ++H FL  ++SHP  + +Y  L ++  
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGK 691

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            ++  GYVP+ S +L  VE +  +E  L  HSE++A+A+GL+ + P   IRI KNLR CG
Sbjct: 692 EMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   + +SK+  R+I+LRDR RFHHFR G CSC ++W
Sbjct: 752 DCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 42/254 (16%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLF---FDPYSASKLFTPCALGTFSSLEYAREMFD 96
           S+I+ C N + L   KQ+H  +LR   F   FD  S   L+  C  G F+    AR +F+
Sbjct: 291 SVIRACANARLLQLGKQVHAYVLRREDFSFHFDN-SLVTLYYKC--GKFNE---ARAIFE 344

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL--------------------------- 129
           ++P  +L +WN L+  Y SS    ++ +IF ++                           
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 130 ---VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
              +    + P ++ F   IK+ A L  +  GQ  H  ++K  F+  L   N+LI  YA 
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAK 464

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG +  A  VF  +   D VSWN++I+   Q G   +A+++Y EM  + ++PD +T + V
Sbjct: 465 CGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTV 524

Query: 247 LSACAKKRDLEFGR 260
           L+AC+    ++ GR
Sbjct: 525 LTACSHAGLVDQGR 538



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 38/304 (12%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           E D     +++  Y   GD+A+A  VF    +  +D V +N+MI+GF        AI L+
Sbjct: 77  EPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLF 136

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN---VNPDEFTF 285
            +M+ E  KPD+ T  +VL+  A   D E      +    FH   L      V       
Sbjct: 137 CKMKHEGFKPDDFTYASVLAGLALVVDDE------KQCVQFHAAALKSGAGYVTSVSNAL 190

Query: 286 VSVLSACAQL-----GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           VSV S CA        A  +   I  K ++          T+++  Y K G  D   E+ 
Sbjct: 191 VSVYSRCASSPSLLHSARKVFDDIPEKDERS--------WTTMMTGYVKNGCFDLGKELL 242

Query: 341 HTV-KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
             + ++  +  ++ MI+G+   G  +EAL++  RM  + ++ +  T+ +V+ AC+++ L+
Sbjct: 243 KGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYT-----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             G+        V+  V   + ++      +V +  + G  +EA    EKMP     S W
Sbjct: 303 QLGKQ-------VHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVS-W 354

Query: 455 GALL 458
            ALL
Sbjct: 355 NALL 358


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 347/618 (56%), Gaps = 50/618 (8%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           ++++ C   + ++  +Q+H ++L +G   D   A++L    A     SL  AR +FD++P
Sbjct: 73  TILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSL--ARRVFDEMP 130

Query: 100 -QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            Q N++ WN LIRAY+       +  ++  ++      P+ FT+P V+KA A L+    G
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H  V+++++  D+F+   LI  YA CG +  A+ VF     +D   WNSMI+   Q 
Sbjct: 191 REVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQN 250

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G   +A+ L R M  E + P   T+V+ +SA A    L  GR                  
Sbjct: 251 GRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGR------------------ 292

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                                   ++H    ++G      L TSL+DMY K G +  A  
Sbjct: 293 ------------------------ELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHV 328

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSG 397
           +F  +  R++  W+ MI GF M+G    A +LFSRM+ EA+V P+ +TF  VL AC+H G
Sbjct: 329 LFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGG 388

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           +V E +  F+ M  VY + P V+HYTC+VD+LG +G   EA + I+ M + P + +WGAL
Sbjct: 389 MVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGAL 448

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L  CKIH+NVELAE A   L+ELEPE+ G  VLLSNIYA++GKW+  + +RK M   GLK
Sbjct: 449 LNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLK 508

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K   CS IE+ G+ H FL G++SHP   +IY +L+ +   +   GYVP+ + +   VE++
Sbjct: 509 KIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDD 568

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +      HSERLAIA+GLIS  P   + + KNLRVC DCH V KLIS++  REI++RD
Sbjct: 569 EKRNMVWG-HSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRD 627

Query: 638 RYRFHHFRGGNCSCMDYW 655
             R+HHF  G CSC D+W
Sbjct: 628 VNRYHHFVNGECSCKDHW 645



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 4/179 (2%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + ++L +C    A+  G Q+HA++   G  L+  L T L+D+Y  CG++  A  VF  + 
Sbjct: 71  YATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP 130

Query: 345 SR-DVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           ++ +VF+W+ +I  +A  G    A++L+  M     +KP+  T+  VL AC+    +  G
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           R   +++         V   T ++DM  + G +DEA        I   A+VW +++ AC
Sbjct: 191 REVHDRVMRT-NWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTI-RDAAVWNSMIAAC 247


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/637 (37%), Positives = 348/637 (54%), Gaps = 59/637 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +T+            V   + Q  +++  K+IH   +R G   D    + +      
Sbjct: 218 PNSSTIV----------GVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILD--VY 265

Query: 83  GTFSSLEYAREMFDQIP-QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY--NSPYFPNE 139
           G    ++YAR +FD +    N  TW+ ++ AY       ++  +F QL+   +     + 
Sbjct: 266 GKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSA 325

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T   VI+  A L     G  +H   IKS F  DL + N+L+  YA CG           
Sbjct: 326 VTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCG----------- 374

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
                      +I+G         A+  + EM++     D V+  A++S   +  + E  
Sbjct: 375 -----------IING---------AMRFFNEMDLR----DAVSFTAIISGYVQNGNSE-- 408

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
               E L +F E+QLS  +NP++ T  SVL ACA L  +  G   H      G   +  +
Sbjct: 409 ----EGLRMFLEMQLS-GINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMI 463

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +LIDMY KCG +D A +VF  +  R +  W+TMI  + ++G G EAL LF  MQ   +
Sbjct: 464 CNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGL 523

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           KP+ VTF  ++ ACSHSGLV EG+ +FN M   +G++P ++HY CMVD+L RAGL  E  
Sbjct: 524 KPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVH 583

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
            FIEKMP+ P   VWGALL AC++++NVEL E     + +L PE+ G  VLLSN+Y+  G
Sbjct: 584 SFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVG 643

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE-SSHPLCKEIYSKLDEIVARL 558
           +WD+ +++R   +  G +K PGCS IE++G +H FL G   SHP   +I +KLDE++  +
Sbjct: 644 RWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEM 703

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K  GY    S++ Q VEEE+ +E+ L  HSE+LAIA+G++S+ P + I + KNLRVCGDC
Sbjct: 704 KRLGYQAESSYVFQDVEEEE-KERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDC 762

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           HT  K IS +  R+I +RD  RFHHF+ G C+C D+W
Sbjct: 763 HTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 199/430 (46%), Gaps = 67/430 (15%)

Query: 47  QCKNIKQLKQIHTQMLR-------TGL--FFDPYSA-SKLFTPCALGTFSSLEYAREMFD 96
           Q K++ + K IH  +L+       T L  F  P+     L+  C     S L+ AR +FD
Sbjct: 21  QSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIAC-----SELKIARHVFD 75

Query: 97  QIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           ++P    N+  WN LIRAY+ +    ++  ++ +++      PN FTFPFV+KA + L +
Sbjct: 76  KMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML-GYGITPNRFTFPFVLKACSALKE 134

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ IH  + +   E ++++S +L+ FYA CG L  A  VF  + K+DVV+WNSMISG
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 215 F-VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           F +  G +++   L  +M+  +V P+  T+V VL A A+   L  G+             
Sbjct: 195 FSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGK------------- 240

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                                        +IH    ++G   +  + T ++D+Y KC  +
Sbjct: 241 -----------------------------EIHGFCVRRGFVGDVVVGTGILDVYGKCQCI 271

Query: 334 DKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSR---MQEAKVKPNAVTFTNV 389
           D A  +F  +   ++   WS M+  + +    REAL+LF +   +++  +  +AVT   V
Sbjct: 272 DYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATV 331

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           +  C++   +  G    +      G V  +     ++ M  + G+++ A+ F  +M +  
Sbjct: 332 IRVCANLTDLSTGTC-LHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRD 390

Query: 450 GASVWGALLG 459
             S    + G
Sbjct: 391 AVSFTAIISG 400



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 47/284 (16%)

Query: 180 LIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           L+  Y  C +L +A  VF  +    K+VV WN +I  +   G +E+AI+LY +M      
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKM------ 110

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                                               L   + P+ FTF  VL AC+ L  
Sbjct: 111 ------------------------------------LGYGITPNRFTFPFVLKACSALKE 134

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
              G +IH  +K+  ++ N Y++T+L+D Y KCG LD A EVF  +  RDV  W++MI+G
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 358 FAMY-GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           F+++ G   E   L  +MQ   V PN+ T   VL A +    +  G+   +      G V
Sbjct: 195 FSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKE-IHGFCVRRGFV 252

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             V   T ++D+ G+   +D A    + M IV     W A++GA
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/503 (42%), Positives = 323/503 (64%), Gaps = 14/503 (2%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFD 96
           P P+ S  +   +I +L Q H  +L++GL    ++AS+L    +  + + ++ YA  +F 
Sbjct: 7   PPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFS 66

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +IP PN Y WNT+IRAY++S  P  +  IF Q+++ S   P+++TF F +K+        
Sbjct: 67  RIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVE 125

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG V+K+   DDLFI N+LIH YA CG +  A  +   + ++DVVSWN+++S + 
Sbjct: 126 EGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYA 185

Query: 217 QGGFFEKAIE-LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           + G  E A   ++ E  ++NV    V+  A+++  +       GR+ +E L +F ++Q  
Sbjct: 186 ERGLMELASRRVFGETPVKNV----VSWNAMITGYSHA-----GRF-SEVLVLFEDMQ-H 234

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             V PD  T VSVLSACA +GA+  G  +HA + K GI ++ ++ T+L+DMY+KCG+++K
Sbjct: 235 AGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEK 294

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           ALEVF++   +D+  W+++I+G + +G G+ AL +FS M     KPN VTF  VL ACS 
Sbjct: 295 ALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSR 354

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GL+DEGR  FN M  V+G+ P ++HY CMVD+LGR GLL+EA E ++KMP    + VW 
Sbjct: 355 AGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWE 414

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           +LLGAC+ H NVELAE     LLEL P+   + V LSN+YA  G+W +V E+R+ MR  G
Sbjct: 415 SLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQG 474

Query: 516 LKKEPGCSSIEVNGEIHKFLAGE 538
           ++K+PGCS IEV+G +++FLAGE
Sbjct: 475 VRKDPGCSMIEVDGTVYEFLAGE 497


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 331/603 (54%), Gaps = 52/603 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTLIRA 112
           KQ+H  + +TG   +P+  + L +    G  S ++ AR++FD+ PQ    T  +N+L+  
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLIS--MYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSG 87

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y+ ++      ++F ++        N  T   +++         +G  +HG  +K   + 
Sbjct: 88  YALNSRVKDVVVLFCEMRELGVEI-NGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDM 146

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D  + N L+  Y   G++     +F  + +K +++WN+MI+G+ Q G     +ELY+EME
Sbjct: 147 DSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEME 206

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                                     SK   PD  T V VLS+C
Sbjct: 207 ------------------------------------------SKGFCPDPLTLVGVLSSC 224

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A LGA+ +G ++  KM+  G   N +L  +L++MY +CGNL KA ++F  +  + V  W+
Sbjct: 225 AHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWT 284

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +I G+ M+G G  A+ LF  M    +KP+   F +VL ACSH+GL ++G  +F  ME  
Sbjct: 285 AIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERK 344

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           YG+ PG +HY+CMVD+LGRAG L+EA E IE M +    ++WGALLGACKIH NVELAE 
Sbjct: 345 YGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAEL 404

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   ++ELEP N G  VLLSN+Y + G  + +  +R  MR   LKK+PGCS +E  G +H
Sbjct: 405 AFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVH 464

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F AG+ +HP   EIY KL+E+   +K         H     E  +    ++ +HSE+LA
Sbjct: 465 LFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDH-----ERREEYLNSMGVHSEKLA 519

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           +A+ L++      I I+KNLR+CGDCH   KL+SK+ +R+ ++RD  RFHHF+ G CSC 
Sbjct: 520 VAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCK 579

Query: 653 DYW 655
           +YW
Sbjct: 580 EYW 582



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 38/249 (15%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L    +P+ FTF   + +CA L     G Q+H  + K G  L  ++ TSLI MY KC  +
Sbjct: 2   LRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLI 61

Query: 334 DKALEVF-HTVKSRDVFV-WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           D A ++F    +SR + V ++++++G+A+    ++ + LF  M+E  V+ N VT   ++ 
Sbjct: 62  DNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQ 121

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
            C   G +  G M  +     +G+        C++ M  ++G +D   +  ++MP   G 
Sbjct: 122 PCGIPGNLGLG-MCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP-RKGL 179

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
             W A++                                  N YA+ G  +NV EL K M
Sbjct: 180 ITWNAMI----------------------------------NGYAQNGLANNVLELYKEM 205

Query: 512 RVSGLKKEP 520
              G   +P
Sbjct: 206 ESKGFCPDP 214


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/659 (34%), Positives = 373/659 (56%), Gaps = 63/659 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGL----------FFDPY--SASKLFTPCALGTFSSLEY 90
           +L+    N +Q  Q+H  +++TG+              Y   AS+L  PC     S++  
Sbjct: 156 ALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPC-----SAMVS 210

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN---------SPYFP---- 137
           AR++FD++P+ +  TW T+I  Y  + +   +  +F  +V N         S Y      
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270

Query: 138 -----------------NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD----LFI 176
                            ++ T+  +I A A +  F++G+ +H  ++K+    +    L +
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSV 330

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           SN+LI  Y     +  A  +F  +  +++++WN+++SG+V  G  E+A   + EM ++N+
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
               +T+  ++S  A+     FG   +E L +F +++L     P +F F   L+AC+ LG
Sbjct: 391 ----LTLTVMISGLAQN---GFG---DEGLKLFKQMRLD-GFEPCDFAFAGALTACSVLG 439

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           A++ G Q+HA++   G + +  +  ++I MY KCG ++ A  VF T+ S D+  W++MIA
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
               +G G +A++LF +M +  V P+ +TF  VL ACSH+GLV++GR +FN M   YG+ 
Sbjct: 500 ALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P   HY  MVD+  RAG+   A   I+ MP  PGA VW ALL  C+IH N++L   A   
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQ 619

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           L +L P+N G  VLLSNIYA  G+W++V+++RK MR   ++KEP CS IEV  ++H F+ 
Sbjct: 620 LFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMV 679

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
            +  HP    +Y  L+++   +K  GY+P+   +L  +E E  +E AL+ HSE+LA+ +G
Sbjct: 680 DDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQ-KEHALSTHSEKLAVGFG 738

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++ + P   +R+ KN+R+CGDCH   K +SK+  REI++RDR RFHHF+ G+CSC DYW
Sbjct: 739 IMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 194/457 (42%), Gaps = 92/457 (20%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSS-----------SAEPI-------------- 120
           S++ YAR++F++IP P+     TLI AY +           +  P+              
Sbjct: 62  SNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITG 121

Query: 121 -------QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV--QFRVGQAIHGMVIKSSFE 171
                   S +   + +    + P++FTF  V+ A    V  + + GQ +H  V+K+   
Sbjct: 122 YAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ-MHCAVVKTGMG 180

Query: 172 -DDLFISNSLIHFYAI--------CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
                + N+L+  Y          C  +  A  +F  + K+D ++W +MI+G+V+     
Sbjct: 181 CVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN 240

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A E++  M +EN+      M++    C   +         EAL++  +++    +  D+
Sbjct: 241 GAREVFEAM-VENLGAAWNAMISGYVHCGCFQ---------EALTLCRKMRF-LGIQFDD 289

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN----CYLTTSLIDMYTKCGNLDKALE 338
            T+ +++SACA +G+  +G Q+HA + K  +  N      ++ +LI +Y K   +D+A +
Sbjct: 290 ITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 339 VFHTVKSRDVFVW-------------------------------STMIAGFAMYGCGREA 367
           +F+ +  R++  W                               + MI+G A  G G E 
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEG 409

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L LF +M+    +P    F   L ACS  G ++ GR    Q+  + G    +     M+ 
Sbjct: 410 LKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMIS 468

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           M  + G+++ A      MP V   S W +++ A   H
Sbjct: 469 MYAKCGVVEAAESVFVTMPSVDLVS-WNSMIAALGQH 504


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 345/546 (63%), Gaps = 14/546 (2%)

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +  Q P  ++ +W +LI AYS +    ++   F  ++ +    P+E T   V+ A A+L 
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG-IAPDEVTVIAVLSACAKLK 253

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMI 212
              +G+++H +V +        +  +LI  YA CGD   A  VF  +G+     SWN++I
Sbjct: 254 DLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAII 313

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
            G+ + G  + A  L+ EME+ ++    +T  ++++       L       EAL +F  +
Sbjct: 314 DGYCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLR------EALLLFMSM 363

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +   ++  D FT V++L+ACA LGA+  G  +HA ++++ ++ + YL T+L+DMY KCG 
Sbjct: 364 R-RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGR 422

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +D+A  VF  +  RDV  W+ MIAG A  G G+ AL+ F +M+    +PN+V++  VL A
Sbjct: 423 VDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTA 482

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSHS L++EGR++F++M  +Y + P ++HY CM+D+LGR+GLLDEA++ ++ MPI P A 
Sbjct: 483 CSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAV 542

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W ++L AC++H++++LA+ A  HLL+LEP+  G  V L NIY  + +W+N S++R  M 
Sbjct: 543 IWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLME 602

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              +KK  G SSI V G++HKF+  + SHP   EI + L+EI  RLKS GY P  S +  
Sbjct: 603 ERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITV 662

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            V+EE+ +EQAL  HSE+LAIA+GLI++ P+ P+ I KNLRVC DCH+  KLIS+L+NRE
Sbjct: 663 DVDEEE-KEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNRE 721

Query: 633 ILLRDR 638
           I++RDR
Sbjct: 722 IIVRDR 727



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 205/437 (46%), Gaps = 53/437 (12%)

Query: 49  KNIKQLKQIHTQMLRTG-LFFDPYSASKLFTP---CALGTFSSLEYAREMFDQIPQPNLY 104
           + ++Q  ++H ++  +G L   P SA  L      C       L YA  +FD++P P+ +
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTF 68

Query: 105 TWNTLIRAYS-SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK---AAARLVQFRVGQA 160
            ++T +RA S + ++P + F++F ++   +   P+ FTF F+ K   +++R     +   
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRM-RRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTM 127

Query: 161 IHGMVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           +H   +++       F+SNSLIH Y   G  A A   F  I  KD V+W  +ISG  + G
Sbjct: 128 LHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMG 187

Query: 220 FF-------------------------------EKAIELYREMEMENVKPDEVTMVAVLS 248
                                             +A+  ++ M    + PDEVT++AVLS
Sbjct: 188 MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLS 247

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           ACAK +DLE GR         H L   K +   E   V+++   A+ G      Q+   +
Sbjct: 248 ACAKLKDLELGR-------SLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDAL 300

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G +   +   ++ID Y K G++D A  +F  ++ RD+  +++M+ G+   G  REAL
Sbjct: 301 GR-GPRPQSW--NAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
            LF  M+   ++ +  T  N+L AC+  G + +GR     +E    V   +   T ++DM
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL-VEADIYLGTALLDM 416

Query: 429 LGRAGLLDEAVEFIEKM 445
             + G +DEA    ++M
Sbjct: 417 YMKCGRVDEATIVFQRM 433



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T LI    K G L     +      RDV  W+++IA ++     REA+  F  M    + 
Sbjct: 177 TMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIA 236

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P+ VT   VL AC+    ++ GR     +E   G+         ++DM  + G    A +
Sbjct: 237 PDEVTVIAVLSACAKLKDLELGRSLHLLVEE-KGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 441 FIEKMPIVPGASVWGALL-GACKIHENVELAE 471
             + +   P    W A++ G CK H +V++A 
Sbjct: 296 VFDALGRGPRPQSWNAIIDGYCK-HGHVDVAR 326


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 349/601 (58%), Gaps = 46/601 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K IH   ++T    +P+    L    A   +  +E AR +F+ IP  ++  W+ LI  Y+
Sbjct: 271 KGIHGCAVKTLCDTEPHVGGALLDMYAKCGY--IEDARTVFEIIPHDDVILWSFLISRYA 328

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S +  Q+F +FL+++  S   PNEF+   V++A A +    +GQ IH +VIK  +E +L
Sbjct: 329 QSYQNEQAFEMFLRMM-RSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESEL 387

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ N+L+  YA C ++  +  +F  +   + VSWN++I G+ Q GF E            
Sbjct: 388 FVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAE------------ 435

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                        +ALS+F E++ + +V   + TF SVL ACA 
Sbjct: 436 -----------------------------DALSVFQEMR-AAHVLSTQVTFSSVLRACAN 465

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
             ++   VQIH+ ++K     +  +  SLID Y KCG +  AL+VF ++   DV  W+ +
Sbjct: 466 TASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAI 525

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I+G+A++G   +AL+LF+RM ++  KPN VTF  +L  C  +GLV++G   FN M   + 
Sbjct: 526 ISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHR 585

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P + HYTC+V +LGRAG L++A++FI  +P  P   VW ALL +C +H+NV L +++ 
Sbjct: 586 IKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSA 645

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             +LE+EP++    VLLSN+YA  G  D V+ LRK MR  G+KKE G S +E+ GE+H F
Sbjct: 646 EKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAF 705

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
             G + HP  + I + L+ +  +    GYVP+ + +L  V+EE+ + + L +HSERLA+A
Sbjct: 706 SVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEE-KARMLWVHSERLALA 764

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YGL    P  PIRI+KNLR C DCHTV K+ISK+  REI++RD  RFHHF  G CSC DY
Sbjct: 765 YGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDY 824

Query: 655 W 655
           W
Sbjct: 825 W 825



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 50/369 (13%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           L+++C    + +  + +H ++++ G     D + A+ L    A      L  AR +FD +
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYA--KLGPLAAARRLFDGM 110

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ N+ ++ TL++ Y+      ++  +F +L     +  N F    ++K    +    + 
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGLFRRL-QREGHEVNHFVLTTILKVLVAMDAPGLT 169

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             IH    K   + + F+ +SLI  Y++CG ++ A CVF  I  KD V+W +M+S + + 
Sbjct: 170 CCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEN 229

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
              E A+  + +M M   KP                                        
Sbjct: 230 DIPEDALNTFSKMRMAGAKP---------------------------------------- 249

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
           NP  F   SVL A   L +  +G  IH    K       ++  +L+DMY KCG ++ A  
Sbjct: 250 NP--FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDART 307

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF  +   DV +WS +I+ +A      +A ++F RM  + V PN  + + VL AC++   
Sbjct: 308 VFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF 367

Query: 399 VDEGRMFFN 407
           +D G+   N
Sbjct: 368 LDLGQQIHN 376



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 140/310 (45%), Gaps = 56/310 (18%)

Query: 148 AAARLVQ-------FRVGQAIHGMVIKSS--FEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           A ARL+Q        R G+A+H  V++     + D F +N L++ YA  G LA A  +F 
Sbjct: 49  ACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFD 108

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
            + ++++VS+ +++ G+   G FE+A  L+R ++ E                        
Sbjct: 109 GMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREG----------------------- 145

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
                      HE+        + F   ++L     + A  +   IHA   K G   N +
Sbjct: 146 -----------HEV--------NHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAF 186

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           + +SLID Y+ CG +  A  VF  +  +D   W+ M++ ++      +AL+ FS+M+ A 
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246

Query: 379 VKPNAVTFTNVLCA--CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
            KPN    T+VL A  C  S ++ +G +    ++ +    P V     ++DM  + G ++
Sbjct: 247 AKPNPFVLTSVLKAAVCLSSAVLGKG-IHGCAVKTLCDTEPHVG--GALLDMYAKCGYIE 303

Query: 437 EAVEFIEKMP 446
           +A    E +P
Sbjct: 304 DARTVFEIIP 313


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 352/624 (56%), Gaps = 76/624 (12%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+FD++P+ N+ +W  ++R Y       ++  +F Q+       P +    + +    
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-------PEKNVVSWTVMLGG 231

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L + R+ +A    +     E D+    ++I  Y   G L  A  +F  + +++VVSW +
Sbjct: 232 LLQEGRIDEACR--LFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTT 289

Query: 211 MISGFVQG-------------------------------GFFEKAIELYREMEMENV--- 236
           MI+G+VQ                                G  ++A EL+  M +++V   
Sbjct: 290 MITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVAC 349

Query: 237 ------------------------KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
                                   + DE T  A++    +K  LE      +AL +F  +
Sbjct: 350 NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK-GLEL-----DALELFRMM 403

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q  + + P+  + +SVLS CA L  +D G +IHA++ +    L+ Y+ + L+ MY KCGN
Sbjct: 404 Q-REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L KA +VF     +DV +W+++I G+A +G G EAL +F  M  + + P+ VTF  VL A
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CS++G V +G   FN ME  Y V   ++HY CMVD+LGRAG L+EA++ IEKMP+   A 
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +WGALLGAC+ H  ++LAE A   LL LEP+N G  +LLSNIYA  G+WD+V+ELR++MR
Sbjct: 583 IWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMR 642

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESS-HPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
              + K PGCS I V  ++HKF  G+SS HP   EI   L+ +   L+  GY P++S +L
Sbjct: 643 DRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVL 702

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V+EE+ + Q+L  HSE+LA+AYGL+ +    PIR++KNLRVCGDCH   KLI+K+  R
Sbjct: 703 HDVDEEE-KVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGR 761

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHF+ G+CSC DYW
Sbjct: 762 EIILRDANRFHHFKDGSCSCRDYW 785



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 59/356 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              +E AR +FD++   N+ +WN+++  Y  +  P ++  +F ++   +    N     +
Sbjct: 111 LGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGY 170

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +           + +A    V     E ++    +++  Y   G ++ A  +F  + +K+
Sbjct: 171 INNGM-------INEARE--VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVSW  M+ G +Q G  ++A  L+  M  ++V    VT   ++         + GR   E
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYC-----QVGRLV-E 271

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           A  +F E+   +NV     ++ ++++   Q   +DI  ++   M ++    N    T+++
Sbjct: 272 ARMLFDEMP-RRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAML 322

Query: 325 DMYTKCGNLDKALEVFHTV----------------------KSRDVF---------VWST 353
             YT CG LD+A E+F+ +                      K+R VF          WS 
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           MI  +   G   +AL+LF  MQ   ++PN  +  +VL  C+    +D GR    Q+
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 44/324 (13%)

Query: 164 MVIKSSFEDDLFIS-NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           +V+   +  +  IS NSLI  Y+  G +  A  VF  +  K+++SWNS+++G+ Q    +
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 223 KAIELYREMEMENVKP---------------------DEVTMVAVLSACAKKRDLEFGRW 261
           +A  ++ +M   N                        D +    V+S  A  R       
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            +EA ++F ++   KNV     ++  +L    Q G +D   ++   M ++ +       T
Sbjct: 207 ISEAETLFWQMP-EKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRT 257

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           ++I  Y + G L +A  +F  +  R+V  W+TMI G+       + +D+  ++ E   + 
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ----NQQVDIARKLFEVMPEK 313

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N V++T +L   ++ G +DE    FN M P+  VV        M+   G+ G + +A + 
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELFNAM-PIKSVVA----CNAMILCFGQNGEVPKARQV 368

Query: 442 IEKMPIVPGASVWGALLGACKIHE 465
            ++M        W A++   K++E
Sbjct: 369 FDQMR-EKDEGTWSAMI---KVYE 388



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 20/166 (12%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            SLI  Y++ G ++KA  VF  ++ +++  W++++AG+      +EA ++F +M E    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            N +++  ++    ++G+++E R  F++M P   VV     +T MV    + G++ EA  
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRM-PERNVVS----WTAMVRGYVKEGMISEAET 212

Query: 441 FIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
              +MP   +V    + G LL   +I E       AC  L ++ PE
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDE-------AC-RLFDMMPE 250



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 50/276 (18%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           V S+     N+   ++IH Q++R+    D Y AS    ++  C      +L  A+++FD+
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG-----NLAKAKQVFDR 472

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
               ++  WN++I  Y+     +++  +F  + + S   P++ TF  V+ A +       
Sbjct: 473 FAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF-SGIMPDDVTFVGVLSACS-----YT 526

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G    G+ I +S E    +   + H+           C+  ++G+               
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHY----------ACMVDLLGR--------------- 561

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G   +A++L  +M ME    D +   A+L AC     L+      + L +       KN
Sbjct: 562 AGKLNEAMDLIEKMPME---ADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE----PKN 614

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
             P    F+ + +  A  G  D   ++   M+ + +
Sbjct: 615 AGP----FILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 346/569 (60%), Gaps = 17/569 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +F+++       WN +I  Y  S   +++F +F ++V       +EFTF  V+ A A
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPL-DEFTFTSVLSACA 305

Query: 151 RLVQFRVGQAIHGMV--IKSSF--EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
               F  G+++HG +  ++ +F  E  L ++N+L+  Y+ CG++A+A  +F  +  KDVV
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+++SG+V+    +KA+E++ EM  +N    E++ + ++S          G +  +AL
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKN----ELSWMVMVSGYVH------GGFSEDAL 415

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F+ ++ +++V P ++T+   +SAC +LG++  G Q+H  + + G + +     +LI M
Sbjct: 416 KLFNRMR-AEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITM 474

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y +CG + +A  +F  + + D   W+ MI+    +G GREAL+LF RM    + P+ ++F
Sbjct: 475 YARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISF 534

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL AC+HSGLVDEG  +F  M+  +G++PG  HYT ++D+LGRAG + EA + I+ MP
Sbjct: 535 LTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P  S+W A+L  C+   ++EL  +A   L ++ P++ G  +LLSN Y+  G+W + + 
Sbjct: 595 FEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAAR 654

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK MR  G+KKEPGCS IE   ++H F+ G++ HP   ++Y  L+ + AR++  GYVP+
Sbjct: 655 VRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPD 714

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  +E    +E  L  HSERLA+ +GL+ + P   + ++KNLR+C DCH V   +S
Sbjct: 715 TKVVLHDMEPHQ-KEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMS 773

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K   REI++RD  RFHHF+ G CSC +YW
Sbjct: 774 KAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 188/468 (40%), Gaps = 56/468 (11%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF--DPYSASKLFTPCALGTFSSLEYAREM 94
           HPH    LI        L  +   +      F  DP   +      A      L  A   
Sbjct: 58  HPHLTLRLI-------HLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSF 110

Query: 95  FDQIPQPNLYT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           FD +PQ    T   N +I AY+ ++    +  +F  L+ +    P++++F  ++ AA  L
Sbjct: 111 FDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHL 170

Query: 153 --VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC----------------------- 187
             +  R    +   V+KS     L +SN+L+  Y  C                       
Sbjct: 171 PNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALT 230

Query: 188 -----------GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
                      GD+  A  VF  +  K  V WN+MISG+V  G   +A EL+R M +E V
Sbjct: 231 WTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERV 290

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
             DE T  +VLSACA       G+  +  ++      + +   P     V++ S C   G
Sbjct: 291 PLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKC---G 347

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            + +  +I   MK + +        +++  Y +   LDKA+EVF  +  ++   W  M++
Sbjct: 348 NIAVARRIFDNMKSKDV----VSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVS 403

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           G+   G   +AL LF+RM+   VKP   T+   + AC   G +  G+     +  + G  
Sbjct: 404 GYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQL-GFE 462

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
                   ++ M  R G + EA      MP +   S W A++ A   H
Sbjct: 463 GSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVS-WNAMISALGQH 509



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 149/352 (42%), Gaps = 47/352 (13%)

Query: 26  TTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF 85
             L VNN        + +L  +C NI   ++I   M       D  S + + +       
Sbjct: 331 AALPVNNA-------LVTLYSKCGNIAVARRIFDNMKSK----DVVSWNTILS--GYVES 377

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S L+ A E+F+++P  N  +W  ++  Y        +  +F ++       P ++T+   
Sbjct: 378 SCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED-VKPCDYTYAGA 436

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I A   L   + G+ +HG +++  FE      N+LI  YA CG +  A  +F+++   D 
Sbjct: 437 ISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDS 496

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC--------------A 251
           VSWN+MIS   Q G   +A+EL+  M  E + PD ++ + VL+AC              +
Sbjct: 497 VSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFES 556

Query: 252 KKRDLEFGRWPNE------------ALSIFHELQLSKNV--NPDEFTFVSVLSACAQLGA 297
            KRD  FG  P E            A  I     L K +   P    + ++LS C   G 
Sbjct: 557 MKRD--FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGD 614

Query: 298 MDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           M++G     ++ K   + +  Y+  S  + Y+  G    A  V   ++ R V
Sbjct: 615 MELGAHAADQLFKMTPQHDGTYILLS--NTYSAAGRWVDAARVRKLMRDRGV 664


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 347/597 (58%), Gaps = 19/597 (3%)

Query: 66  LFFDPYSASKLFTPCALGTF----SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           + FD  +   + T  AL +        E A   F+++P  ++ +WN++I  YS     ++
Sbjct: 198 VVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLE 257

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           + +IF +++      P+ FT   ++ A A L +  +G+ IH  ++++  E    + N+LI
Sbjct: 258 ALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 182 HFYAICGDLAMAYCVFV--MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
             YA  G + +A  +         +++++ S++ G+ + G  + A E++ ++   +V   
Sbjct: 318 SMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAW 377

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
              +V  +         + G W N+AL +F  L +++   P+ +T  ++LS  + L  ++
Sbjct: 378 TAMIVGYV---------QNGLW-NDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILE 426

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGF 358
            G QIHA   K G      +T +LI MY K GN++ A  VF     + ++  W++MI   
Sbjct: 427 HGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL 486

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           A +G G+EA++LF RM    +KP+ +T+  VL AC+H GLV++GR ++N M  V+ + P 
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           + HY CM+D+ GRAGLL EA  FIE MPI P    WG+LL +CKIH+N +LA+ A   LL
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
            ++P N GA + L+N+Y+  GKW+N ++ RK M+  G++KE G S I +  E+H F   +
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
             HP   EIY  + EI   +K  G++P+   +L  +EEE V+EQ L  HSE+LAIA+GL+
Sbjct: 667 VIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEE-VKEQILKYHSEKLAIAFGLL 725

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +   +  +RI+KNLRVC DCH+  K ISKL  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 726 NTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 238/526 (45%), Gaps = 83/526 (15%)

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           V NSP   +EF F  +++ + R+     G+++H  +IK      +++ N+L+ FYA  G 
Sbjct: 3   VGNSPT-SSEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A+ VF  +  K   SWN++ISG+ + G FE +  L  EM       D V+  A++  
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP----DCDPVSWTAIIVG 116

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                  +FG + N A+ +F ++ +S+ V P +FT  +VLS+CA    +DIG +IH+ + 
Sbjct: 117 YN-----QFGLFDN-AIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVV 169

Query: 310 KQGIKLNCYLTTSLIDMYTKCGN-------------------------------LDKALE 338
           K G+     + TSL++MY KCG+                                + A  
Sbjct: 170 KLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAAS 229

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSG 397
            F  +  RD+  W++MI+G++  G   EAL +FS+M  E  +KP+  T  ++L AC++  
Sbjct: 230 QFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLE 289

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE-----KMPIVPGAS 452
            ++ G+     +        G      ++ M  ++G ++ A   +E      + I+   S
Sbjct: 290 KLNIGKQIHAYILRAETETSGAVG-NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS 348

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +   L G  K+  NV+ A    + L + +     A+++    Y + G W++  EL + M 
Sbjct: 349 L---LDGYTKLG-NVKPAREIFNKLRDRDVVAWTAMIVG---YVQNGLWNDALELFRLMV 401

Query: 513 VSG-----------LKKEPGCSSIEVNGEIH--KFLAGESSHPLCKE----IYSKLDEIV 555
             G           L      + +E   +IH     AGESS P        +Y+K   I 
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 556 ARLKSFGYVPNR-------SHLLQLVEEEDVQEQALNLHSERLAIA 594
              + F  +PN        + ++  + +  + ++A+NL    L++ 
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/636 (36%), Positives = 350/636 (55%), Gaps = 58/636 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q   +H   LR   + D      L     L
Sbjct: 199 PNASTLV----------SLLPLLAQHGALFQGTSVHAYCLRA--YLDQNEEQVLIGTALL 246

Query: 83  GTFSS---LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
             ++    L YA  +F  +   N  TW+ LI  +       ++F +F  ++     F + 
Sbjct: 247 DMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSA 306

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            +    ++  A L   R+G  +H ++ KS    DL   NSL+  YA  G +  A  +F  
Sbjct: 307 TSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDE 366

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           I  KD +S+ +++SG+VQ G  E+A  ++++M+                AC         
Sbjct: 367 IAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ----------------AC--------- 401

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                            NV PD  T VS++ AC+ L A+  G   H  +  +G+ L   +
Sbjct: 402 -----------------NVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI 444

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             SLIDMY KCG +D + +VF  + +RD+  W+TMIAG+ ++G G+EA  LF  M+    
Sbjct: 445 CNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGF 504

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           +P+ VTF  ++ ACSHSGLV EG+ +F+ M   YG++P ++HY CMVD+L R G LDEA 
Sbjct: 505 EPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAY 564

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           +FI+ MP+     VWGALLGAC+IH+N++L +     + +L PE  G  VLLSNI++  G
Sbjct: 565 QFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAG 624

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           ++D  +E+R   +V G KK PGCS IE+NG +H F+ G+ SHP   +IY +LD I+  +K
Sbjct: 625 RFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIK 684

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GY  + S +LQ +EEE  +E+AL  HSE+LAIA+G++S+   + I + KNLRVCGDCH
Sbjct: 685 KLGYQADTSFVLQDLEEE-EKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCH 743

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           T  K ++ + NR I++RD  RFHHF+ G CSC D+W
Sbjct: 744 TAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 220/530 (41%), Gaps = 106/530 (20%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF---PNEFTFPF 144
           L  AR++FD+IP P+   +N LIRAYS        F   + L  +  YF   PN++TFPF
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGP----FHAAIDLYRSMLYFRVPPNKYTFPF 104

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+KA + L     G+ IH          DLF+S +LI  Y  C     A  VF  +  +D
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VV+WN+M++G+   G +  AI    +M+                          G  PN 
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRG-----------------------GLRPNA 201

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTT 321
           +                  T VS+L   AQ GA+  G  +HA   +  +  N     + T
Sbjct: 202 S------------------TLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGT 243

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVK 380
           +L+DMY KC +L  A  VFH +  R+   WS +I GF +     EA +LF  M  E    
Sbjct: 244 ALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCF 303

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            +A +  + L  C+    +  G    + +    G+   +     ++ M  +AGL++EA  
Sbjct: 304 LSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATM 362

Query: 441 FIEKMPIVPGASVWGALLG-------------------ACKIHENVELAEY---ACSHLL 478
             +++ I    S +GALL                    AC +  ++        ACSHL 
Sbjct: 363 LFDEIAIKDTIS-YGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLA 421

Query: 479 ELEPE--NHGALVL------------LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            L+    +HG++++            L ++YAK G+ D   ++          K P    
Sbjct: 422 ALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQV--------FDKMPARDI 473

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           +  N      +AG   H L KE  +    +   +K+ G+ P+    + L+
Sbjct: 474 VSWN----TMIAGYGIHGLGKEATT----LFLSMKNQGFEPDDVTFICLI 515



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 116/282 (41%), Gaps = 58/282 (20%)

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           G LA+A  VF  I   D  ++N++I  +   G F  AI+LYR M    V P++ T   VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
            AC+   DL  GR                                           IHA 
Sbjct: 107 KACSALADLCAGR------------------------------------------TIHAH 124

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
               G+  + +++T+LID+Y +C     A  VF  +  RDV  W+ M+AG+A +G    A
Sbjct: 125 AAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHA 184

Query: 368 LDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEG--------RMFFNQMEPVYGVVPG 418
           +     MQ+   ++PNA T  ++L   +  G + +G        R + +Q E    V+ G
Sbjct: 185 IAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE--QVLIG 242

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
               T ++DM  +   L  A      M  V     W AL+G 
Sbjct: 243 ----TALLDMYAKCKHLVYACRVFHGMT-VRNEVTWSALIGG 279



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G L  A +VF  + + D   ++ +I  ++  G    A+DL+  M   +V PN  TF  VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACS    +  GR        V G+   +   T ++D+  R      A     KMP+   
Sbjct: 107 KACSALADLCAGRTIHAHAAAV-GLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM-RD 164

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPE-----NHGALVLLSNIYAKTG 499
              W A+L     + N  +  +A +HLL+++       N   LV L  + A+ G
Sbjct: 165 VVAWNAMLAG---YANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           + L+ A+E  +   +     WN +I  Y+     +++F +F +++ +     +EFTF  V
Sbjct: 237 NDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL-DEFTFTSV 295

Query: 146 IKAAARLVQFRVGQAIHGMVIKS----SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           I   A    FR+G+ +H   +K+    + +  + ++N+LI FY  CG + +A  +F  + 
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP 355

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++D+VSWN ++SG+V     ++A   + EM  +N+    ++ + ++S  A     + G +
Sbjct: 356 ERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI----LSWIIMISGLA-----QIG-F 405

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EAL  F+ ++L +   P ++ F   + +C+ LG++  G Q+HA++ + G + +     
Sbjct: 406 AEEALKFFNRMKL-QGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGN 464

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI MY +CG +D A  +F  +   D   W+ MIA    +G G +A++LF  M +  + P
Sbjct: 465 ALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILP 524

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + ++F  V+ ACSH+GLV EGR +F+ M  VYGV P  +HY  ++D+L RAG   EA E 
Sbjct: 525 DRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEV 584

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           +E MP  PGA +W ALL  C+IH N++L   A   L EL+P++ G  VLLSN+YA  G+W
Sbjct: 585 MESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQW 644

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++++++RK MR  G+KKEPGCS IEV  ++H FL G+++HP  ++IY+ L+++V  ++  
Sbjct: 645 NDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKI 704

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP+   +L  V E D++E  L+ HSE+LA+AYG + +     +R+ KNLR+CGDCH  
Sbjct: 705 GYVPDTKCVLHDV-ESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNA 763

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            K +SK+  REI++RD  RFHHFR G CSC DYW
Sbjct: 764 FKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 197/495 (39%), Gaps = 108/495 (21%)

Query: 55  KQIHTQMLRTGL---------FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           + +H  M+ +G            D YS S           S L YAR +FD+IPQP++  
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKS-----------SKLNYARYLFDEIPQPDIVA 81

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQ--------LVYNS------------------------ 133
             TLI AYS++ +   S  IF          + YN+                        
Sbjct: 82  RTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRD 141

Query: 134 PYFPNEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC----- 187
            + P+ +TF  V+ A A + +  +  Q +H  V+KS       + N+LI  Y  C     
Sbjct: 142 NFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPS 201

Query: 188 -----------------------------------GDLAMAYCVFVMIGKKDVVSWNSMI 212
                                               DL  A        KK  V+WN+MI
Sbjct: 202 AQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMI 261

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           SG+   G + +A E++R+M M  ++ DE T  +V+S CA       G+   E  + F  L
Sbjct: 262 SGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGK---EMHAYF--L 316

Query: 273 QLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTK 329
           +   N  PD    V  ++++   + G +DI  +I  KM ++  +  N  L+      Y  
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSG-----YVN 371

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
              +D+A   F+ +  +++  W  MI+G A  G   EAL  F+RM+    +P    F   
Sbjct: 372 VRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGA 431

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           + +CS  G +  GR    Q+   YG    +     ++ M  R G++D A      MP V 
Sbjct: 432 IISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVD 490

Query: 450 GASVWGALLGACKIH 464
             S W A++ A   H
Sbjct: 491 AIS-WNAMIAALGQH 504



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 170/409 (41%), Gaps = 57/409 (13%)

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
           + + + + +H  +I S F+    I N LI  Y+    L  A  +F  I + D+V+  ++I
Sbjct: 27  ISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLI 86

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           + +   G  + + +++ +  +     D V   A+++A +   D       + A+ +F ++
Sbjct: 87  AAYSAAGDLKLSRKIFSDTPLG--MRDSVFYNAMITAYSHNHD------GHAAIELFCDM 138

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ-IHAKMKKQGIKLNCYLTTSLIDMYTKC- 330
           Q   N  PD +TF SVL A A +   +   Q +H  + K G      +  +LI  Y KC 
Sbjct: 139 Q-RDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCA 197

Query: 331 ---------------------------------------GNLDKALEVFHTVKSRDVFVW 351
                                                   +LD A E  +    +    W
Sbjct: 198 ASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAW 257

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-MFFNQME 410
           + MI+G+A  G   EA ++F +M  +K++ +  TFT+V+  C+++G    G+ M    ++
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317

Query: 411 PVYGVVPGVKH--YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
            V    P V       ++    + G +D A E   KMP     S W  +L     + NV 
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVS-WNIILSG---YVNVR 373

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
             + A S   E+  +N  + +++ +  A+ G  +   +    M++ G +
Sbjct: 374 CMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFE 422


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 352/624 (56%), Gaps = 76/624 (12%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+FD++P+ N+ +W  ++R Y       ++  +F Q+       P +    + +    
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-------PEKNVVSWTVMLGG 231

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L + R+ +A    +     E D+    ++I  Y   G L  A  +F  + +++VVSW +
Sbjct: 232 LLQEGRIDEACR--LFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTT 289

Query: 211 MISGFVQG-------------------------------GFFEKAIELYREMEMENV--- 236
           MI+G+VQ                                G  ++A EL+  M +++V   
Sbjct: 290 MITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVAC 349

Query: 237 ------------------------KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
                                   + DE T  A++    +K  LE      +AL +F  +
Sbjct: 350 NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK-GLEL-----DALELFRMM 403

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           Q  + + P+  + +SVLS CA L  +D G +IHA++ +    L+ Y+ + L+ MY KCGN
Sbjct: 404 Q-REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L KA +VF     +DV +W+++I G+A +G G EAL +F  M  + + P+ VTF  VL A
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CS++G V +G   FN ME  Y V   ++HY CMVD+LGRAG L+EA++ IEKMP+   A 
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +WGALLGAC+ H  ++LAE A   LL LEP+N G  +LLSNIYA  G+WD+V+ELR++MR
Sbjct: 583 IWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMR 642

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESS-HPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
              + K PGCS I V  ++HKF  G+SS HP   EI   L+ +   L+  GY P++S +L
Sbjct: 643 DRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVL 702

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V+EE+ + Q+L  HSE+LA+AYGL+ +    PIR++KNLRVCGDCH   KLI+K+  R
Sbjct: 703 HDVDEEE-KVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGR 761

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHF+ G+CSC DYW
Sbjct: 762 EIILRDANRFHHFKDGSCSCRDYW 785



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 59/356 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              +E AR +FD++   N+ +WN+++  Y  +  P ++  +F ++   +    N     +
Sbjct: 111 LGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGY 170

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +           + +A    V     E ++    +++  Y   G ++ A  +F  + +K+
Sbjct: 171 INNGM-------INEARE--VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVSW  M+ G +Q G  ++A  L+  M  ++V    VT   ++         + GR   E
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYC-----QVGRLV-E 271

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           A  +F E+   +NV     ++ ++++   Q   +DI  ++   M ++    N    T+++
Sbjct: 272 ARMLFDEMP-RRNV----VSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAML 322

Query: 325 DMYTKCGNLDKALEVFHTV----------------------KSRDVF---------VWST 353
             YT CG LD+A E+F+ +                      K+R VF          WS 
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSA 382

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           MI  +   G   +AL+LF  MQ   ++PN  +  +VL  C+    +D GR    Q+
Sbjct: 383 MIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 44/324 (13%)

Query: 164 MVIKSSFEDDLFIS-NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           +V+   +  +  IS NSLI  Y+  G +  A  VF  +  K+++SWNS+++G+ Q    +
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 223 KAIELYREMEMENVKP---------------------DEVTMVAVLSACAKKRDLEFGRW 261
           +A  ++ +M   N                        D +    V+S  A  R       
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            +EA ++F ++   KNV     ++  +L    Q G +D   ++   M ++ +       T
Sbjct: 207 ISEAETLFWQMP-EKNV----VSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRT 257

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           ++I  Y + G L +A  +F  +  R+V  W+TMI G+       + +D+  ++ E   + 
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ----NQQVDIARKLFEVMPEK 313

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N V++T +L   ++ G +DE    FN M P+  VV        M+   G+ G + +A + 
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELFNAM-PIKSVVA----CNAMILCFGQNGEVPKARQV 368

Query: 442 IEKMPIVPGASVWGALLGACKIHE 465
            ++M        W A++   K++E
Sbjct: 369 FDQMR-EKDEGTWSAMI---KVYE 388



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 20/166 (12%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            SLI  Y++ G ++KA  VF  ++ +++  W++++AG+      +EA ++F +M E    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            N +++  ++    ++G+++E R  F++M P   VV     +T MV    + G++ EA  
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRM-PERNVVS----WTAMVRGYVKEGMISEAET 212

Query: 441 FIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
              +MP   +V    + G LL   +I E       AC  L ++ PE
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDE-------AC-RLFDMMPE 250



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 50/276 (18%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQ 97
           V S+     N+   ++IH Q++R+    D Y AS    ++  C      +L  A+++FD+
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG-----NLAKAKQVFDR 472

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
               ++  WN++I  Y+     +++  +F  + + S   P++ TF  V+ A +       
Sbjct: 473 FAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF-SGIMPDDVTFVGVLSACS-----YT 526

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G    G+ I +S E    +   + H+           C+  ++G+               
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHY----------ACMVDLLGR--------------- 561

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G   +A++L  +M ME    D +   A+L AC     L+      + L +       KN
Sbjct: 562 AGKLNEAMDLIEKMPME---ADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE----PKN 614

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
             P    F+ + +  A  G  D   ++   M+ + +
Sbjct: 615 AGP----FILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 359/601 (59%), Gaps = 39/601 (6%)

Query: 66  LFFDPYSASKLFT-PCALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           L F+  S   L +  C +G F     L  AR +FD++P  +  +WNT+I  Y+      Q
Sbjct: 194 LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQ 253

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDL-----F 175
           +  +F +    SP   + FT+  ++           G   +GM+ ++ +F D++      
Sbjct: 254 ARRLFDE----SPT-RDVFTWTAMVS----------GYVQNGMLDEAKTFFDEMPEKNEV 298

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
             N++I  Y     + +A  +F  +  +++ SWN+MI+G+ Q G   +A + +  M    
Sbjct: 299 SYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP--- 355

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-QLSKNVNPDEFTFVSVLSACAQ 294
            + D V+  A+++  A+    E      EAL++F E+ Q  +++N    TF   LS CA 
Sbjct: 356 -QRDCVSWAAIIAGYAQSGHYE------EALNMFVEIKQDGESLN--RATFGCALSTCAD 406

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           + A+++G QIH +  K G    C++  +L+ MY KCG++D+A + F  ++ +DV  W+TM
Sbjct: 407 IAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTM 466

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           +AG+A +G GR+AL +F  M+ A VKP+ +T   VL ACSH+GL+D G  +F  M   YG
Sbjct: 467 LAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYG 526

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           V+P  KHYTCM+D+LGRAG L+EA + I  MP  PGA+ WGALLGA +IH N EL E A 
Sbjct: 527 VIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA 586

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             + ++EP+N G  VLLSN+YA +G+W +  ++R  MR  G++K PG S +EV  +IH F
Sbjct: 587 EMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTF 646

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
             G+ SHP  + IY+ L+E+  +++  GYV     +L  VEEE+ +E  L  HSE+LA+A
Sbjct: 647 SVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEE-KEHMLKYHSEKLAVA 705

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +G++++   +PIR++KNLRVC DCH+  K ISK+  R I+LRD +RFHHF  G CSC DY
Sbjct: 706 FGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDY 765

Query: 655 W 655
           W
Sbjct: 766 W 766



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 199/472 (42%), Gaps = 67/472 (14%)

Query: 20  PRHPNPTTLTVN--------NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF---- 67
           PR  +P  L  N        NGH      VF+ + +  ++     I +  LR   F    
Sbjct: 42  PRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI-SGYLRNSKFNLAR 100

Query: 68  --FDPYSASKLFT----------PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
             FD      LF+           C LG       AR +FD +P+ ++ +WN+L+  Y+ 
Sbjct: 101 NLFDQMPERDLFSWNVMLTGYVRNCRLGD------ARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    ++  +F  +       P + +  +    AA +   R+ +A   ++ +S  + DL 
Sbjct: 155 NGYVDEAREVFDNM-------PEKNSISWNGLLAAYVHNGRIEEAC--LLFESKSDWDLI 205

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
             N L+  +     L  A  +F  +  +D +SWN+MISG+ QGG   +A  L+ E    +
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
           V     T  A++S   +   L+      EA + F E+        +E ++ ++++   Q 
Sbjct: 266 V----FTWTAMVSGYVQNGMLD------EAKTFFDEMP-----EKNEVSYNAMIAGYVQT 310

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
             MDI  ++   M  + I        ++I  Y + G++ +A + F  +  RD   W+ +I
Sbjct: 311 KKMDIARELFESMPCRNIS----SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           AG+A  G   EAL++F  +++     N  TF   L  C+    ++ G+    Q   + G 
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM-GY 425

Query: 416 VPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPIVPGASVWGALLGACKIH 464
             G      ++ M  + G +DEA    E IE+  +V     W  +L     H
Sbjct: 426 GTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS----WNTMLAGYARH 473


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 342/579 (59%), Gaps = 25/579 (4%)

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C +G +     L+ AR +FD++P  +  +WN +I  Y+ +    ++  +F +L       
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------- 272

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P    F +    +  +    + +A    + +   E +    N++I  Y     +  A  +
Sbjct: 273 PIRDVFAWTAMVSGFVQNGMLDEATR--IFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  ++  SWN+M++G+ Q G  ++A  L+ EM     + D ++  A++S  A+    
Sbjct: 331 FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP----QRDCISWAAMISGYAQSGQS 386

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           E      EAL +F +++    +  +       LS+CA++ A+++G Q+H ++ K G +  
Sbjct: 387 E------EALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTG 439

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
                +L+ MY KCG++++A +VF  +  +D+  W+TMIAG+A +G G+EAL LF  M+ 
Sbjct: 440 YIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK- 498

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             +KP+ VT   VL ACSH+GLVD+G  +FN M   YG+    KHYTCM+D+LGRAG LD
Sbjct: 499 MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLD 558

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA+  ++ MP  P A+ WGALLGA +IH + EL E A   + E+EP+N G  VLLSN+YA
Sbjct: 559 EALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYA 618

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            +G+W  V E+R  MR  G+KK PG S +E+  + H F  G+ SHP  + IY+ L+E+  
Sbjct: 619 ASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDL 678

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            LK  G+V +   +L  VEEE+ +E  L  HSE+LA+A+G++S+ P +PIR++KNLRVC 
Sbjct: 679 ELKKDGFVSSTKLVLHDVEEEE-KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCE 737

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   K ISK+  R+I++RD  RFHHF  G+CSC DYW
Sbjct: 738 DCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 168/426 (39%), Gaps = 92/426 (21%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I   ++  WN  I AY    +   +  +F     N     +  T+  +I       +F  
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYNAMISGYLSNNKFDC 109

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            +     V +   + DL   N ++  Y   G+L+ A  +F  + +KDVVSWN+M+SGF Q
Sbjct: 110 ARK----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-------------KRDLEFGRWP-- 262
            GF E+A +++ +M ++N    E++   +LSA  +             K D E   W   
Sbjct: 166 NGFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL 221

Query: 263 ----------NEALSIFHELQLSKNVN--------------------------PDEFTFV 286
                     ++A S+F  + +   ++                           D F + 
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT 281

Query: 287 SVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLT------------------------- 320
           +++S   Q G +D   +I  +M +K  +  N  +                          
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 321 -TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +++  Y +CGN+D+A  +F  +  RD   W+ MI+G+A  G   EAL LF +M+    
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
             N       L +C+    ++ G+    ++    G   G      ++ M G+ G ++EA 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 440 EFIEKM 445
           +  E +
Sbjct: 461 DVFEDI 466



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 50/274 (18%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           +  C  I  L   KQ+H ++++ G      + + L      G   S+E A ++F+ I + 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA--MYGKCGSIEEAFDVFEDITEK 469

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           ++ +WNT+I  Y+      ++  +F  +       P++ T   V+ A +           
Sbjct: 470 DIVSWNTMIAGYARHGFGKEALALFESMKMTIK--PDDVTLVGVLSACS----------- 516

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  ++    E      NS+   Y I  +     C+  ++G+                G  
Sbjct: 517 HTGLVDKGME----YFNSMYQNYGITANAKHYTCMIDLLGR---------------AGRL 557

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           ++A+ L + M      PD  T  A+L A     D E G     A  +F        + PD
Sbjct: 558 DEALNLMKSMPF---YPDAATWGALLGASRIHGDTELG--EKAAEKVFE-------MEPD 605

Query: 282 EFTFVSVLSAC-AQLGAMDIGVQIHAKMKKQGIK 314
                 +LS   A  G      ++ +KM+ +G+K
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVK 639


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 360/602 (59%), Gaps = 54/602 (8%)

Query: 58  HTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           H Q++R GL  D  +++ L   ++ C L     +E AR++FD++P  +L +WNT++ +++
Sbjct: 70  HAQIIRVGLRADTITSNMLMNMYSKCGL-----VESARKLFDEMPVRSLVSWNTMVGSHT 124

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVGQAIHGMVIKSSFEDD 173
            + +  ++ ++F+Q+        +EFT   V+ A AA+   F   Q +HG  +K++ + +
Sbjct: 125 QNGDCEKALVLFMQMQKEGTS-CSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSN 182

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +F+  +L+  YA CG +  A  VF  + ++  V+W+SM++G+VQ   +E           
Sbjct: 183 VFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE----------- 231

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EAL +FH  Q +  +  ++FT  S LSACA
Sbjct: 232 ------------------------------EALVLFHRAQ-AMGLEHNQFTISSALSACA 260

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
              A+  G Q+ A   K GI  N ++ +SLIDMY KCG +++A  VF +V+ ++V +W+ 
Sbjct: 261 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 320

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +++GF+ +    EA+  F +MQ+  + PN +T+ +VL ACSH GLV++GR +F+ M  V+
Sbjct: 321 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 380

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            V P V HY+CMVD+LGRAGLL EA +FI++MP    AS+WG+LL +C+I+ N+ELAE A
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVA 440

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             HL E+EP N G  VLLSNIYA   +W+ V+  R  ++ S  KKE G S IE+  ++H 
Sbjct: 441 AKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHS 500

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+ GE +HP   EIY KL+++V  +K  GY     H L  VEE   QE  L  HSE+LA+
Sbjct: 501 FMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQE-LLRHHSEKLAL 559

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
            +G++ +    PIRI+KNLR+CGDCH+  KL S +  REI++RD  RFHHF+ G CSC +
Sbjct: 560 TFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGE 619

Query: 654 YW 655
           +W
Sbjct: 620 FW 621



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 56/326 (17%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++++AR      G A H  +I+     D   SN L++ Y+ CG +  A  +F  +  + 
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +VSWN+M+    Q G  EKA+ L+ +M+ E     E T+ +V+ ACA K           
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAK----------- 161

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
              +F                      C QL         H    K  +  N ++ T+L+
Sbjct: 162 -CCVFE---------------------CKQL---------HGFALKTALDSNVFVGTALL 190

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           D+Y KCG +  A  VF  +  R    WS+M+AG+       EAL LF R Q   ++ N  
Sbjct: 191 DVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQF 250

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           T ++ L AC+    + EG+    Q++ V    G+   +   + ++DM  + G+++EA   
Sbjct: 251 TISSALSACAARAALIEGK----QVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTV 306

Query: 442 ---IEKMPIVPGASVWGALLGACKIH 464
              +E+  +V    +W A+L     H
Sbjct: 307 FSSVEEKNVV----LWNAILSGFSRH 328



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           + KQ+H   L+T L  + +  + L   +  C L   ++L     +F+ +P+ +  TW+++
Sbjct: 166 ECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANL-----VFECMPERSDVTWSSM 220

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +  Y  + E  +  ++            N+FT    + A A       G+ +  +  K+ 
Sbjct: 221 VAGYVQN-ELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG 279

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              ++F+ +SLI  YA CG +  AY VF  + +K+VV WN+++SGF +     +A+  + 
Sbjct: 280 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFE 339

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           +M+   + P+++T ++VLSAC+    +E GR
Sbjct: 340 KMQQMGICPNDITYISVLSACSHLGLVEKGR 370


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/709 (33%), Positives = 392/709 (55%), Gaps = 74/709 (10%)

Query: 11  TLSTPVISLPRH---PNPTTLTVNN-----GHQHH-PHPVF------------------S 43
           +LSTP +SL      P+PT  + ++        HH PH +                   S
Sbjct: 50  SLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPS 109

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPC----------------- 80
            IK C +++ L   +Q+H     +G   D   AS L   +  C                 
Sbjct: 110 AIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRD 169

Query: 81  ------ALGTFSSL---EYAREMFDQIP----QPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
                  +  +S L   E A+E+F ++     +PNL +WN ++  + ++    ++  +F 
Sbjct: 170 VVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFR 229

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
            ++    ++P+  T   V+ A   L    VG  +HG VIK     D F+ ++++  Y  C
Sbjct: 230 MMLVQG-FWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKC 288

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           G +     VF  + + ++ S N+ ++G  + G  + A+E++ + + + ++ + VT  +++
Sbjct: 289 GCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSII 348

Query: 248 SACAKK-RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           ++C++  +DLE       AL +F ++Q +  V P+  T  S++ AC  + A+  G +IH 
Sbjct: 349 ASCSQNGKDLE-------ALELFRDMQ-AYGVEPNAVTIPSLIPACGNISALMHGKEIHC 400

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
              ++GI  + Y+ ++LIDMY KCG +  A   F  + + ++  W+ ++ G+AM+G  +E
Sbjct: 401 FSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKE 460

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
            +++F  M ++  KP+ VTFT VL AC+ +GL +EG   +N M   +G+ P ++HY C+V
Sbjct: 461 TMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLV 520

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
            +L R G L+EA   I++MP  P A VWGALL +C++H N+ L E A   L  LEP N G
Sbjct: 521 TLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPG 580

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             +LLSNIYA  G WD  + +R+ M+  GL+K PG S IEV  ++H  LAG+ SHP  K+
Sbjct: 581 NYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKD 640

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           I  KLD++  ++K  GY+P  + +LQ VEE+D +EQ L  HSE+LA+  GL++  P QP+
Sbjct: 641 ILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQD-KEQILCGHSEKLAVVLGLLNTSPGQPL 699

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +++KNLR+C DCH V K+IS+L  REI +RD  RFHHF+ G CSC D+W
Sbjct: 700 QVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 194/385 (50%), Gaps = 19/385 (4%)

Query: 41  VFSLIKQC-----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG-TFSSLEYAREM 94
           +F  + QC      ++ Q +Q H  +LR  LF D    + L +  A   + S+ + +  +
Sbjct: 1   MFHALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTL 60

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
              +P P L+++++LI A++ S         F  L +     P+ F  P  IK+ A L  
Sbjct: 61  SSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHL-HPLRLIPDAFLLPSAIKSCASLRA 119

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              GQ +H     S F  D  +++SL H Y  C  +  A  +F  +  +DVV W++MI+G
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG 179

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR--WPNEALSIFHEL 272
           + + G  E+A EL+ EM    V+P+ V+   +L+         FG   + +EA+ +F  +
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAG--------FGNNGFYDEAVGMF-RM 230

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
            L +   PD  T   VL A   L  + +G Q+H  + KQG+  + ++ ++++DMY KCG 
Sbjct: 231 MLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGC 290

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           + +   VF  V+  ++   +  + G +  G    AL++F++ ++ K++ N VT+T+++ +
Sbjct: 291 VKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIAS 350

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVP 417
           CS +G   E    F  M+  YGV P
Sbjct: 351 CSQNGKDLEALELFRDMQ-AYGVEP 374


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/600 (38%), Positives = 357/600 (59%), Gaps = 37/600 (6%)

Query: 66  LFFDPYSASKLFT-PCALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           L F+  S   L +  C +G F     L  AR +FD++P  +  +WNT+I  Y+      Q
Sbjct: 194 LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQ 253

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDL-----F 175
           +  +F +    SP   + FT+  ++           G   +GM+ ++ +F D++      
Sbjct: 254 ARRLFDE----SPT-RDVFTWTAMVS----------GYVQNGMLDEAKTFFDEMPEKNEV 298

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
             N++I  Y     + +A  +F  +  +++ SWN+MI+G+ Q G   +A + +  M    
Sbjct: 299 SYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP--- 355

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
            + D V+  A+++  A+    E      EAL++F E++     + +  TF   LS CA +
Sbjct: 356 -QRDCVSWAAIIAGYAQSGHYE------EALNMFVEIK-QDGESLNRATFGCALSTCADI 407

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A+++G QIH +  K G    C++  +L+ MY KCG++D+A + F  ++ +DV  W+TM+
Sbjct: 408 AALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTML 467

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           AG+A +G GR+AL +F  M+ A VKP+ +T   VL ACSH+GL+D G  +F  M   YGV
Sbjct: 468 AGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV 527

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
           +P  KHYTCM+D+LGRAG L+EA + I  MP  PGA+ WGALLGA +IH N EL E A  
Sbjct: 528 IPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAE 587

Query: 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
            + ++EP+N G  VLLSN+YA +G+W +  ++R  MR  G++K PG S +EV  +IH F 
Sbjct: 588 MVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFS 647

Query: 536 AGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAY 595
            G+ SHP  + IY+ L+E+  +++  GYV     +L  VEEE+ +E  L  HSE+LA+A+
Sbjct: 648 VGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEE-KEHMLKYHSEKLAVAF 706

Query: 596 GLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           G++++   +PIR++KNLRVC DCH+  K ISK+  R I+LRD +RFHHF  G CSC DYW
Sbjct: 707 GILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 126/283 (44%), Gaps = 70/283 (24%)

Query: 386 FTNVLCACS------------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           F    C+C             ++GL+D G  +F  M   Y V P  KHYTCM+D+LGR  
Sbjct: 755 FNEGFCSCGDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVD 814

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            L+E                 GALLGA +IH N EL E A     ++ P+N G       
Sbjct: 815 RLEE-----------------GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI------ 851

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
                            MR  G++K PG S  EV  +IH F  G           S+  E
Sbjct: 852 ---------------SKMRDVGVQKVPGYSWFEVQNKIHTFSVG--------LFLSRERE 888

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN-L 612
            +  L+           L++ E E+ +E+ L   SE LA A G++++   +P R++K  +
Sbjct: 889 NIGFLEELD--------LKMREREEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRV 940

Query: 613 RVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            VC DC +  K +SK+  R I LRD +RF+      CSC +YW
Sbjct: 941 YVCEDCRSAIKHMSKIVGRLITLRDSHRFNE---SICSCGEYW 980



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 199/472 (42%), Gaps = 67/472 (14%)

Query: 20  PRHPNPTTLTVN--------NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF---- 67
           PR  +P  L  N        NGH      VF+ + +  ++     I +  LR   F    
Sbjct: 42  PRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI-SGYLRNSKFNLAR 100

Query: 68  --FDPYSASKLFT----------PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
             FD      LF+           C LG       AR +FD +P+ ++ +WN+L+  Y+ 
Sbjct: 101 NLFDQMPERDLFSWNVMLTGYVRNCRLGD------ARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    ++  +F  +       P + +  +    AA +   R+ +A   ++ +S  + DL 
Sbjct: 155 NGYVDEAREVFDNM-------PEKNSISWNGLLAAYVHNGRIEEAC--LLFESKSDWDLI 205

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
             N L+  +     L  A  +F  +  +D +SWN+MISG+ QGG   +A  L+ E    +
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
           V     T  A++S   +   L+      EA + F E+        +E ++ ++++   Q 
Sbjct: 266 V----FTWTAMVSGYVQNGMLD------EAKTFFDEMP-----EKNEVSYNAMIAGYVQT 310

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
             MDI  ++   M  + I        ++I  Y + G++ +A + F  +  RD   W+ +I
Sbjct: 311 KKMDIARELFESMPCRNIS----SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           AG+A  G   EAL++F  +++     N  TF   L  C+    ++ G+    Q   + G 
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM-GY 425

Query: 416 VPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPIVPGASVWGALLGACKIH 464
             G      ++ M  + G +DEA    E IE+  +V     W  +L     H
Sbjct: 426 GTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS----WNTMLAGYARH 473


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 346/597 (57%), Gaps = 19/597 (3%)

Query: 66  LFFDPYSASKLFTPCALGTF----SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           + FD  +   + T  AL +        E A   F+++P  ++ +WN++I  YS     ++
Sbjct: 198 VVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLE 257

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           +  IF +++      P+ FT   ++ A A L +  +G+ IH  ++++  E    + N+LI
Sbjct: 258 ALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 182 HFYAICGDLAMAYCVFV--MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
             YA  G + +A  +         +++++ S++ G+ + G  + A E++ ++   +V   
Sbjct: 318 SMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAW 377

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
              +V  +         + G W N+AL +F  L +++   P+ +T  ++LS  + L  ++
Sbjct: 378 TAMIVGYV---------QNGLW-NDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILE 426

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGF 358
            G QIHA   K G      +T +LI MY K GN++ A  VF     + ++  W++MI   
Sbjct: 427 HGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMAL 486

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           A +G G+EA++LF RM    +KP+ +T+  VL AC+H GLV++GR ++N M  V+ + P 
Sbjct: 487 AQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           + HY CM+D+ GRAGLL EA  FIE MPI P    WG+LL +CKIH+N +LA+ A   LL
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
            ++P N GA + L+N+Y+  GKW+N ++ RK M+  G++KE G S I +  E+H F   +
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
             HP   EIY  + EI   +K  G++P+   +L  +EEE V+EQ L  HSE+LAIA+GL+
Sbjct: 667 VIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEE-VKEQILKYHSEKLAIAFGLL 725

Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +   +  +RI+KNLRVC DCH+  K ISKL  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 726 NTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 238/526 (45%), Gaps = 83/526 (15%)

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           V NSP   +EF F  +++ + R+     G+++H  +IK      +++ N+L+ FYA  G 
Sbjct: 3   VGNSPT-SSEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A+ VF  +  K   SWN++ISG+ + G FE +  L  EM       D V+  A++  
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP----DCDPVSWTAIIVG 116

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                  +FG + N A+ +F ++ +S+ V P +FT  +VLS+CA    +DIG +IH+ + 
Sbjct: 117 YN-----QFGLFDN-AIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVV 169

Query: 310 KQGIKLNCYLTTSLIDMYTKCGN-------------------------------LDKALE 338
           K G+     + TSL++MY KCG+                                + A  
Sbjct: 170 KLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAAS 229

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSG 397
            F  +  RD+  W++MI+G++  G   EAL +FS+M  E  +KP+  T  ++L AC++  
Sbjct: 230 QFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLE 289

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE-----KMPIVPGAS 452
            ++ G+     +        G      ++ M  ++G ++ A   +E      + I+   S
Sbjct: 290 KLNIGKQIHAYILRAETETSGAVG-NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS 348

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +   L G  K+  NV+ A    + L + +     A+++    Y + G W++  EL + M 
Sbjct: 349 L---LDGYTKLG-NVKPAREIFNKLRDRDVVAWTAMIVG---YVQNGLWNDALELFRLMV 401

Query: 513 VSG-----------LKKEPGCSSIEVNGEIH--KFLAGESSHPLCKE----IYSKLDEIV 555
             G           L      + +E   +IH     AGESS P        +Y+K   I 
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 556 ARLKSFGYVPNR-------SHLLQLVEEEDVQEQALNLHSERLAIA 594
              + F  +PN        + ++  + +  + ++A+NL    L++ 
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 359/629 (57%), Gaps = 67/629 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFV 145
           L  AR++FD++   +  TWN++I  Y  + + ++ F IF  +QL   +   P   TF  V
Sbjct: 245 LRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL---AGVKPTHMTFASV 301

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KD 204
           IK+ A L +  + + +    +KS F  D  +  +L+   + C ++  A  +F ++ + K+
Sbjct: 302 IKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKN 361

Query: 205 VVSWNSMISGFVQGGFFEKAI-------------------------------ELYREMEM 233
           VVSW +MISG +Q G  ++A+                               E++ E+  
Sbjct: 362 VVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIK 421

Query: 234 ENVKPDEVTMVAVLSACAK---------------KRDL-----------EFGRWPNEALS 267
            N +       A+L A  K                +DL           + G    EA  
Sbjct: 422 TNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGE-TEEAAK 480

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
           +FH+L + + + P+EFTF SV++ACA    A + G Q HA   K  +     ++++L+ M
Sbjct: 481 LFHQL-IKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTM 539

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y K GN+D A EVF   K RD+  W++MI+G++ +G  ++AL++F  MQ+  +  +AVTF
Sbjct: 540 YAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTF 599

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             V+ AC+H+GLV++G+ +FN M   + + P +KHY+CM+D+  RAG+L++A+  I +MP
Sbjct: 600 IGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMP 659

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             PGA+VW  LLGA ++H NVEL E A   L+ L+PE+  A VLLSN+YA  G W   + 
Sbjct: 660 FPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTN 719

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK M    +KKEPG S IEV  + + FLAG+ +HPL  +IYSKL E+  RLK  GY P+
Sbjct: 720 VRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPD 779

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
             ++   +E+E  +E  L+ HSERLAIA+GLI+  P  PI+IVKNLRVCGDCH   KL+S
Sbjct: 780 TKNVFHDIEDEQ-KETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVS 838

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            +  R I++RD  RFHHF+ G CSC DYW
Sbjct: 839 LVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 221/469 (47%), Gaps = 77/469 (16%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           VF++     + K  +Q+H Q ++ GL  D  S         + T  ++   R +FD++ +
Sbjct: 99  VFNICAGSLDGKLGRQVHCQCVKFGLV-DHVSVGTSLVDMYMKT-ENVNDGRRVFDEMGE 156

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N+ +W +L+  YS +      + +F Q+ Y     PN +T   VI A        +G  
Sbjct: 157 RNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG-VLPNRYTVSTVIAALVNEGVVGIGLQ 215

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H MV+K  FE+ + + NSLI  Y+  G L  A  VF  +  +D V+WNSMI+G+V+ G 
Sbjct: 216 VHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ 275

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------------------- 261
             +  E++ +M++  VKP  +T  +V+ +CA  R+L   +                    
Sbjct: 276 DLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITA 335

Query: 262 ----------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                      ++ALS+F  ++  KNV     ++ +++S C Q G  D  V + ++M+++
Sbjct: 336 LMVALSKCKEMDDALSLFSLMEEGKNV----VSWTAMISGCLQNGGNDQAVNLFSQMRRE 391

Query: 312 GIKLNCY-------------------------------LTTSLIDMYTKCGNLDKALEVF 340
           G+K N +                               + T+L+D Y K GN   A++VF
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-SHSGLV 399
             ++++D+  WS M+AG+A  G   EA  LF ++ +  +KPN  TF++V+ AC S +   
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEAVEFIEK 444
           ++G+ F       Y +   + +  C    +V M  + G +D A E  ++
Sbjct: 512 EQGKQFH-----AYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR 555



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 169/374 (45%), Gaps = 48/374 (12%)

Query: 91  AREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           A  +FD+IP     L   N L+ +YS   +  ++  +F+ L+++S   P+E T   V   
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQ-PDESTLSCVFNI 102

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A  +  ++G+ +H   +K    D + +  SL+  Y    ++     VF  +G+++VVSW
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
            S+++G+   G +    EL+ +M+ E V P+  T+  V++A   +               
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNE--------------- 207

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                      G + IG+Q+HA + K G +    +  SLI +Y+
Sbjct: 208 ---------------------------GVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           + G L  A +VF  ++ RD   W++MIAG+   G   E  ++F++MQ A VKP  +TF +
Sbjct: 241 RLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFAS 300

Query: 389 VLCACSHSGLVDEGRMFFNQMEPV-YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           V+ +C  + L +   +   Q + +  G        T ++  L +   +D+A+     M  
Sbjct: 301 VIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEE 358

Query: 448 VPGASVWGALLGAC 461
                 W A++  C
Sbjct: 359 GKNVVSWTAMISGC 372



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD--IGVQIHAKMKKQGIKLNCYLTT 321
           EAL++F  L L  ++ PDE T   V + CA  G++D  +G Q+H +  K G+  +  + T
Sbjct: 76  EALNLFVSL-LHSSLQPDESTLSCVFNICA--GSLDGKLGRQVHCQCVKFGLVDHVSVGT 132

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SL+DMY K  N++    VF  +  R+V  W++++AG++  G      +LF +MQ   V P
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N  T + V+ A  + G+V  G +  + M   +G    +  +  ++ +  R G+L +A + 
Sbjct: 193 NRYTVSTVIAALVNEGVVGIG-LQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAE 471
            +KM I    +    + G  +  +++E+ E
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 350/620 (56%), Gaps = 52/620 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMF 95
           H +  L  + +++   K  H   +  GL  D  + +    L+T C        + AR +F
Sbjct: 60  HELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQN-----DCARRVF 114

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D +   ++ +WNT+I  Y+ + E +++  +F ++ +       EFT    + A A     
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM-HREGTQMTEFTLSSTLCACAAKYAI 173

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
              + +H + IK + +   F+  + +  YA C  +  A  VF  + +K  V+W+S+ +GF
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           VQ G  E+ + L++  + E                                     +QL+
Sbjct: 234 VQNGLHEEVLCLFQSTQREG------------------------------------MQLT 257

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                 EFT  S+LS CA L  +  G Q+HA + K G   N ++ TSL+D+Y KCG ++K
Sbjct: 258 ------EFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEK 311

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           + EVF  ++ ++V +W+ MIA F+ +    EA+ LF +MQ+  + PN VT+ ++L ACSH
Sbjct: 312 SYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSH 371

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EGR +FN +       P V HY+CMVD+LGR+G  DEA + ++KMP  P AS+WG
Sbjct: 372 TGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWG 431

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           +LLG+ +IH+N+ LA  A   L  LEPEN G  VLLSN+YA +G W+NV   RK++R SG
Sbjct: 432 SLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSG 491

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
            KKE G S IE  G+IH F+AGE  HP   ++Y+KL+EI   ++   +  N    L  V 
Sbjct: 492 AKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDV- 550

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
             D +E+ L  HSE+LA A+GLIS+ P+ PI I KNLR+CGDCH+  K++S +  R++++
Sbjct: 551 HADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIV 610

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G+CSC D+W
Sbjct: 611 RDINRFHHFKDGSCSCGDFW 630



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 2/180 (1%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D FT   +L  CA+  ++ +G   H      G+  +      LI++YTKCG  D A  VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  R +  W+TMIAG+       EAL LFSRM     +    T ++ LCAC+    + 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           E +   + +     +       T  +D+  +  ++ +A    E MP    +  W +L   
Sbjct: 175 ECKQ-LHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMP-EKTSVTWSSLFAG 232


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 334/565 (59%), Gaps = 16/565 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A ++F+++P  N  +W  +I  Y+ +    Q+ ++ LQ ++     P+  +      
Sbjct: 368 VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQA-LVSLQALHRKGMLPSLSSLTSSFF 426

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A + +     G+ +H + +K+  + + ++ N+LI  Y     +     +F  +  KD VS
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS 486

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           +NS +S  VQ   F++A +++  M      PD V+   ++SACA+          NEA+ 
Sbjct: 487 YNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQ------GNEAVE 536

Query: 268 IFHELQLSKNV-NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
           IF  +   + + NP   T +  LS    LGA  +G QIH    K G+     +  +L+ M
Sbjct: 537 IFRSMLHERELPNPPILTILLGLSG--NLGAPQLGQQIHTIAIKLGMDSGLVVANALVSM 594

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KC + D +L+VF +++ RD+F W+T+I G+A +G GREA+ ++  M  A V PN VTF
Sbjct: 595 YFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTF 653

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +L ACSHSGLVDEG  FF  M   YG+ P ++HY CMVD+LGRAG +  A  FI  MP
Sbjct: 654 VGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMP 713

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           I P + +W ALLGACKIH+NVE+   A   L  +EP N G  V+LSNIY+  G WD V++
Sbjct: 714 IEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAK 773

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK M+  G+ K+PGCS +++  ++H F+ G+  H   + IY+ L E+   LK+ GYVP+
Sbjct: 774 VRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPD 833

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  ++EE  +E +L  HSE+LA+AYGL+      PI+I+KNLR+CGDCHT  K +S
Sbjct: 834 TDFVLHDIDEEQ-KESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVS 892

Query: 627 KLYNREILLRDRYRFHHFRGGNCSC 651
            +  REI +RD  RFHHFR G+CSC
Sbjct: 893 SVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 181/383 (47%), Gaps = 32/383 (8%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           LG    L  ARE+FD +P  ++  WN++I AY ++  P        + + ++    N  T
Sbjct: 43  LGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG-----RSLADAISGGNLRT 97

Query: 142 FPFVIKAAARLVQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
              ++   AR  + R  + +  GM ++++        N+++  Y   GD+ +A  +F  +
Sbjct: 98  GTILLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLARKLFDAM 152

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             +DV SWN+M++G+      E+A  L+  M   N     V+   ++S        + GR
Sbjct: 153 PSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERN----GVSWTVMISGYVLIE--QHGR 206

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
               A  +F  + L + + P++   VSVLSA   LG   I   IH  + K G + +  + 
Sbjct: 207 ----AWDMFRTM-LCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVG 261

Query: 321 TSLIDMYTKCGN-LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           T++++ YTK  N LD A++ F  + +R+ + WST+IA  +  G   +A  ++ R    K 
Sbjct: 262 TAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQR-DPLKS 320

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            P+    T++L   +  G +D+ ++ F+Q+       P V  +  M+    +  ++DEA 
Sbjct: 321 VPSR---TSMLTGLARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAE 372

Query: 440 EFIEKMPIVPGASVWGALLGACK 462
           +   +MP     S  G + G  +
Sbjct: 373 DLFNRMPFRNTISWAGMIAGYAR 395


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 341/588 (57%), Gaps = 62/588 (10%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           L L+      P    +  ++     L + + G+AIH  +  S+FEDDL + N +++ YA 
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG L  A  +F  +  KD+VSW  +ISG+ Q G   +A+ L+ +M     +P+E T+ ++
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 247 LSACAKK------RDLE---------------------FGRWPN--EALSIFHEL----- 272
           L A          R L                      + RW +  EA  IF+ L     
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 273 -------------------------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                                     L +   P  FT+ SVL ACA  G+++ G  +HA 
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAH 331

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           + K G +   Y+  +LIDMY K G++  A +VF  +  +D+  W+++I+G+A +G G EA
Sbjct: 332 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 391

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L LF +M +AKV+PN +TF +VL ACSHSGL+DEG+ +F  M+  + +   V H+  +VD
Sbjct: 392 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVD 450

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +LGRAG L+EA +FIE+MPI P A+VWGALLGAC++H+N++L  YA   + EL+P + G 
Sbjct: 451 LLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGP 510

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
            VLLSNIYA  G+  + +++RK M+ SG+KKEP CS +E+  E+H F+A + SHP+ +EI
Sbjct: 511 HVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEI 570

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
               ++I  ++K  GYVP+ SH+L  + ++D +E  L  HSE+LA+A+ ++   P   IR
Sbjct: 571 QRMWEKISGKIKEIGYVPDTSHVLFFMNQQD-RELKLQYHSEKLALAFAVLKTPPGLTIR 629

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           I KN+R+CGDCH+  K  S++  REI++RD  RFHHF  G CSC DYW
Sbjct: 630 IKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/675 (34%), Positives = 361/675 (53%), Gaps = 74/675 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           +++K C N K LKQ   IH+ +++ G   + +    L   ++ C L        A  +F 
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI-----DAIGVFK 373

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I +P++  W+ LI       +  +S  +F  L+      PN++T   ++ AA      +
Sbjct: 374 TIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            GQ+IH  V K  FE D+ +SN+L+  Y   G +     ++  +  +D++SWN+ +SG  
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLH 492

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA------------------------- 251
             G +++ + ++  M  E   P+  T +++L +C+                         
Sbjct: 493 DCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 252 ---------------KKRDLEFGR--------WP------------NEALSIFHELQLSK 276
                          +  D+ F R        W              +AL+ F ++Q  +
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQ-QE 611

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V P+EFT    LS C+ L +++ G Q+H+ + K G   + ++ ++L+DMY KCG +++A
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEA 671

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             +F  +  RD   W+T+I G+A  G G +AL  F  M +  + P+ VTFT +L ACSH 
Sbjct: 672 EALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+EG+  FN M   +G+ P V H  CMVD+LGR G  DE  +FI+KM +   A +W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           +LGA K+H N+ L E A + L EL+PE   + +LLSNI+A  G+WD+V  +R  M   G+
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKEPGCS +E NG++H F++ + SHP  +EI+ KLDE+   L S  YVP   ++L  V E
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +E  L  HSERLA+ + LIS    + IRI KNLR+C DCH V K IS + N+EI++R
Sbjct: 912 TEKKEN-LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVR 970

Query: 637 DRYRFHHFRGGNCSC 651
           D  RFHHF+ G CSC
Sbjct: 971 DVRRFHHFKNGACSC 985



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 215/492 (43%), Gaps = 82/492 (16%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++++C + + L   K IH  +++  +  D +    L    A   +S+  YAR +  ++P
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA--YARLVLAKMP 174

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +W  LI+   +      S  +F Q + N    PNEFT    +KA +  +   +G+
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLF-QEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H    K     DLF+ ++L+  YA CG++ +A  +F+ + +++ V+WN +++G+ Q G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
                ++L+  M   +VK +E T+  VL  CA  ++L+ G+                   
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQ------------------- 334

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                   IH+ + K G + N ++   L+DMY+KCG    A+ V
Sbjct: 335 -----------------------VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGV 371

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F T+K  D+ VWS +I      G   E++ LF  M+     PN  T  ++L A +++G +
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 400 DEGRMFF---------------NQMEPVY---GVV-PGVKHYTCMVDM-----------L 429
             G+                  N +  +Y   G V  G K Y  MVD            L
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 430 GRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELE-PENH 485
              G+ D  +     M     +P    + ++LG+C    +V       +H+++ +  +N+
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNN 551

Query: 486 GALVLLSNIYAK 497
                L ++YAK
Sbjct: 552 FVCTALIDMYAK 563



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 2/176 (1%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + S+L  CA   ++ +   IH  + K  I  + +L  SL+++Y KC     A  V   + 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RDV  W+ +I G    G   +++ LF  MQ   + PN  T    L ACS    +D G+ 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
              Q   + G++  +   + +VD+  + G ++ A +    MP     + W  LL  
Sbjct: 235 MHAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/548 (41%), Positives = 338/548 (61%), Gaps = 13/548 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++FD++ + ++ TW+ LI  +  +    ++   F+ + +      +E      + A A
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM-HKIGVMVDEVVAVSALSACA 252

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L+   +G+ IH + +K   E  + + N+LI+ Y+ CGD+ +A  +F      D++SWNS
Sbjct: 253 NLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNS 312

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MISG+++    + A  ++  M     + D V+  +++S  A+  DL      +E L++F 
Sbjct: 313 MISGYLKCNLVDNAKAIFDSMP----EKDVVSWSSMISGYAQN-DL-----FDETLALFQ 362

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q+S    PDE T VSV+SACA+L A++ G  +HA +K+ G+ +N  L T+LIDMY KC
Sbjct: 363 EMQMS-GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKC 421

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G ++ ALEVF+ +  + +  W+ +I G AM G    +LD+FS M++  V PN +TF  VL
Sbjct: 422 GCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVL 481

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC H GLVDEG+  F  M   + + P VKHY CMVD+LGRAG L EA E + +MP+ P 
Sbjct: 482 GACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPD 541

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
            + WGALLGACK H + E+       L+EL+P++ G  VLLSNIYA  GKWD+V E+R  
Sbjct: 542 VATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGM 601

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M    + K PGCS IE NG IH+FLAG+ +HP    I   L E+  +LK  GY P+ + +
Sbjct: 602 MTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEV 661

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  V+EE+ +E  L  HSE+LAIA+GLI++ P  PIRI+KNLR+C DCHT AKLISK + 
Sbjct: 662 LLDVDEEE-KESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFC 720

Query: 631 REILLRDR 638
           R+I+   R
Sbjct: 721 RKIVFLFR 728



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 217/461 (47%), Gaps = 58/461 (12%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
           ML TG   + Y+AS+L        F  ++Y R +F+ I   N + WN +IRAY  +  P 
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAA-RLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
            +F ++  ++ N     N +T+P +I+A + R  ++   Q +H  V+K  F+ D+++ N+
Sbjct: 61  FAFTLYKSMLSNYLGADN-YTYPLLIQACSIRRSEWEAKQ-VHNHVLKLGFDSDVYVRNT 118

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           LI+ +++C ++  A  VF      D VSWNS+++G+++ G  E+A  +Y +M   ++   
Sbjct: 119 LINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIAS 178

Query: 240 EVTMV------AVLSACAKKRDL---EFGRWP------------NEALSIFHELQLSKNV 278
              +V       V+ AC    ++   +   W              EA+  F  +     V
Sbjct: 179 NSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMH-KIGV 237

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL----- 333
             DE   VS LSACA L  +++G  IH+   K G +    L  +LI MY+KCG++     
Sbjct: 238 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 297

Query: 334 --------------------------DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
                                     D A  +F ++  +DV  WS+MI+G+A      E 
Sbjct: 298 LFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDET 357

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L LF  MQ +  KP+  T  +V+ AC+    +++G+     ++   G+   V   T ++D
Sbjct: 358 LALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR-NGLTINVILGTTLID 416

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M  + G ++ A+E    M I  G S W AL+    ++  VE
Sbjct: 417 MYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 456


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 342/602 (56%), Gaps = 63/602 (10%)

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           +S    P  +  +F  L       P+  TF   + A ARL   R G+++      + ++D
Sbjct: 84  HSRRGSPASALRVFRAL--PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ +SL+H YA  G +  A  VFV + ++D V+W++M++GFV  G    AI++YR M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL------------SKN--- 277
            + VK DEV M+ V+ AC   R++  G   +  L + H +++            +KN   
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 278 ----------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK------------- 314
                     V+ ++ ++ +++S  AQ G  D  +++   M+  GI+             
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 315 ---------------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                                 NC L T+ IDMY+KCG+L  A  +F+ +  RD+ +W+ 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIA    +G G++AL LF  M E  ++P+  TF ++L A SHSGLV+EG+++F +M   +
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF 440

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            + P  KHY C+VD+L R+GL++EA + +  M   P  ++W ALL  C  ++ +EL E  
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             ++LEL+P++ G L L+SN+YA T KWD V ++RK M+ SG KK PGCSSIE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHV 560

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+  + SHP  +EI SK+ ++   ++  GY+P    +   +EEE V+EQ L+ HSERLAI
Sbjct: 561 FVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE-VKEQQLSYHSERLAI 619

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+GL++  P   + I+KNLRVCGDCH   K ISK+ +REI++RD  RFHHF+ G CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 654 YW 655
           YW
Sbjct: 680 YW 681



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 41  VFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  +I+ C   +N++    +H  +LR G+  D  +A+ L    A      L+ A  +F  
Sbjct: 212 MIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL--LDVACRVFGL 269

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   N  +W+ +I  ++ + +  ++  +F  +   S   P+       + A + +   ++
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKL 328

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+++HG +++  F+ +  +  + I  Y+ CG LA A  +F MI  +D++ WN+MI+    
Sbjct: 329 GRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGA 387

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEALSIFHELQLSK 276
            G  + A+ L++EM    ++PD  T  ++LSA +    +E G+ W    ++ F       
Sbjct: 388 HGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF------- 440

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            + P E  +V ++   A+ G ++    +   MK +
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE 475


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/632 (36%), Positives = 356/632 (56%), Gaps = 55/632 (8%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS---KLFTPCALG 83
           V +G +     V +++     +++LK    I    L+ G  F  Y  +    L++ C   
Sbjct: 201 VADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCG-- 258

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
               +  AR +F +I +P+L  +N +I  ++++     S  +F +L+++     +  T  
Sbjct: 259 ---DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSS-TIV 314

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            +I   +      +  +IHG  +KS    +  +S +    Y    ++ +A  +F    +K
Sbjct: 315 GLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEK 374

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            VV+WN+MISG+ Q G  E AI L++EM                                
Sbjct: 375 TVVAWNAMISGYTQNGSTETAISLFKEM-------------------------------- 402

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
                     +     P+  T  ++LSACAQLG++  G  +H  +K + ++ N Y++T+L
Sbjct: 403 ----------MKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTAL 452

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMY KCGN+ +A ++F ++  ++   W+TMI G+ ++G G EAL L++ M      P+A
Sbjct: 453 VDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSA 512

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           VTF +VL ACSH+GLV EG   F+ M   Y + P ++HY CMVD+LGR+G L++A+EFI+
Sbjct: 513 VTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIK 572

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
           KMP+ PG +VWG LLGAC IH++ ++A  A   L EL+P + G  VLLSNIY+    +  
Sbjct: 573 KMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPK 632

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
            + +R+ ++   L K PGC+ IEVNG  H F++G+ SH    +IY+KL+++  +++  GY
Sbjct: 633 AASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGY 692

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
                  L  VEEE+ +E A+N+HSE+LAIA+GLI+ EP   IRI+KNLRVC DCHT  K
Sbjct: 693 QAETVPALHDVEEEE-KELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATK 751

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            ISK+  R I++RD  RFHHF+ G CSC DYW
Sbjct: 752 FISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/515 (23%), Positives = 223/515 (43%), Gaps = 67/515 (13%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +FSLI +      L Q H Q +  G  FD  + +KL     L  FS+  +AR +F  +P+
Sbjct: 15  LFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQK--LFDFSATRHARALFFSVPK 72

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P+++ +N L+R +S +  P  S  ++  L  N+   P+ FT+ F + A +      +   
Sbjct: 73  PDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML--- 129

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   I   +  ++F+ ++L+  Y     +  A  VF  + ++D V WN+MI+G V+   
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP----------------NE 264
           F+ +I+L+REM  + V+ D  T+ AVL A A+ ++L+ G                     
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTG 249

Query: 265 ALSIFHELQ-------LSKNVN-PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            +S++ +         L + +N PD   + +++S     G  +  V++  ++   G +++
Sbjct: 250 LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVS 309

Query: 317 CYLTTSLIDM-----------------------------------YTKCGNLDKALEVFH 341
                 LI +                                   Y K   +D A  +F 
Sbjct: 310 SSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFD 369

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
               + V  W+ MI+G+   G    A+ LF  M + +  PNAVT T +L AC+  G +  
Sbjct: 370 ESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSF 429

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ + + +     + P +   T +VDM  + G + EA +  + M        W  ++   
Sbjct: 430 GK-WVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGY 487

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
            +H     A    + +L L   N  A+  LS +YA
Sbjct: 488 GLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYA 521


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 354/618 (57%), Gaps = 60/618 (9%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALG---TFSSLEYAREMFDQ 97
           LIK C     +++ K++H  +   G     Y      T   +     F+ LE A+ +FD+
Sbjct: 291 LIKCCLAHGAVREGKRVHRHIFSNG-----YHPKTFLTNILINMYVKFNLLEEAQVLFDK 345

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ N+ +W T+I AYS+ A+     M  L  ++     PN FTF  V++A  RL   + 
Sbjct: 346 MPERNVVSWTTMISAYSN-AQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK- 403

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
              +H  ++K   E D+F+ ++LI  Y+  G+L                           
Sbjct: 404 --QLHSWIMKVGLESDVFVRSALIDVYSKMGELL-------------------------- 435

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                +A++++REM    +  D V   ++++A A+  D       +EAL ++  ++    
Sbjct: 436 -----EALKVFREM----MTGDSVVWNSIIAAFAQHSD------GDEALHLYKSMR-RVG 479

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
              D+ T  SVL AC  L  +++G Q H  + K     +  L  +L+DMY KCG+L+ A 
Sbjct: 480 FPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAK 537

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F+ +  +DV  WSTMIAG A  G   EAL+LF  M+    KPN +T   VL ACSH+G
Sbjct: 538 FIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAG 597

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+EG  +F  M  +YG+ PG +HY CM+D+LGRA  LD+ V+ I +M   P    W  L
Sbjct: 598 LVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTL 657

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+  +NV+LA YA   +L+L+P++ GA VLLSNIYA + +W++V+E+R+ M+  G++
Sbjct: 658 LDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIR 717

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPGCS IEVN +IH F+ G+ SHP   EI  +L++ + RL   GYVP+ + +LQ +E E
Sbjct: 718 KEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGE 777

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             +E +L  HSE+LAI +G++S    + IRI KNL++CGDCH  AKLI++L  R I++RD
Sbjct: 778 Q-REDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRD 836

Query: 638 RYRFHHFRGGNCSCMDYW 655
             R+HHF+ G CSC DYW
Sbjct: 837 PIRYHHFQDGVCSCGDYW 854


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/651 (34%), Positives = 357/651 (54%), Gaps = 85/651 (13%)

Query: 39  HPVF-SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYS---------------------- 72
           H VF S++K C  +  L   + +H  ++R GL FD Y+                      
Sbjct: 106 HNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRL 165

Query: 73  -ASKLFTPCALGTFS-------SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
            A ++F      T S       S +  R++F+ +P+ +L +WNT+I   + +    ++  
Sbjct: 166 GAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
           +  ++   +   P+ FT   V+   A  V    G+ IHG  I+   + D+++++SLI  Y
Sbjct: 226 MIREM-GGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMY 284

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           A C  +A +  VF ++ ++D +SWNS+I+G VQ G F+                      
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFD---------------------- 322

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
                              E L  F ++ ++K + P  ++F S++ ACA L  + +G Q+
Sbjct: 323 -------------------EGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHLGKQL 362

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  + + G   N ++ +SL+DMY KCGN+  A ++F  ++ RD+  W+ MI G A++G  
Sbjct: 363 HGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQA 422

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            +A++LF +M+   +K        VL ACSH GLVDE   +FN M   +G+ PGV+HY  
Sbjct: 423 PDAIELFEQMETEGIKA-------VLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAA 475

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           + D+LGRAG L+EA +FI  M I P  S+W  LL AC++H+N+++AE   + +LE++P N
Sbjct: 476 VSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNN 535

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            GA +LL+NIY+   +W   ++ R  MR  G++K P CS IEV  +++ F+AG+ SHP  
Sbjct: 536 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCY 595

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           ++I   ++ +V  ++  GYVP+ S +   VEEE  ++  +  HSERLAI +G+I+     
Sbjct: 596 EKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQ-KKYLVCSHSERLAIVFGIINTPAGM 654

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IR+ KNLRVC DCHT  K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 655 TIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 128/324 (39%), Gaps = 73/324 (22%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P+++L  F  + L+  + PD   F SVL +CA L  +++G  +H  + + G+  + Y   
Sbjct: 87  PHQSLGSFIGM-LASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGN 145

Query: 322 SLIDMYTKCGNL--------------------------------DKALEVFHTVKSRDVF 349
           +L++MY+K   L                                D   ++F  +  +D+ 
Sbjct: 146 ALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLV 205

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC---------------ACS 394
            W+T+IAG A  G   E L +   M  A +KP++ T ++VL                 CS
Sbjct: 206 SWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCS 265

Query: 395 HSGLVDEGRMFFNQMEPVYG----VVPGVKHYTCMVDMLG-----------RAGLLDEAV 439
               +D      + +  +Y     V    + +T + +  G           + GL DE +
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325

Query: 440 EFIEKM---PIVPGASVWGALLGAC----KIHENVELAEYACSHLLELEPENHGALVLLS 492
            F  +M    I P +  + +++ AC     +H   +L  Y   +  +   EN      L 
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD---ENIFIASSLV 382

Query: 493 NIYAKTGKWDNVSELRKHMRVSGL 516
           ++YAK G      ++   MR+  +
Sbjct: 383 DMYAKCGNIRTAKQIFDRMRLRDM 406


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 360/602 (59%), Gaps = 54/602 (8%)

Query: 58  HTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           H Q++R GL  D  +++ L   ++ C L     +E AR++FD++P  +L +WNT++ +++
Sbjct: 43  HAQIIRVGLRADTITSNMLMNMYSKCGL-----VESARKLFDEMPVRSLVSWNTMVGSHT 97

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA-AARLVQFRVGQAIHGMVIKSSFEDD 173
            + +  ++ ++F+Q+        +EFT   V+ A AA+   F   Q +HG  +K++ + +
Sbjct: 98  QNGDCEKALVLFMQMQKEGTS-CSEFTVSSVVCACAAKCCVFECKQ-LHGFALKTALDSN 155

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +F+  +L+  YA CG +  A  VF  + ++  V+W+SM++G+VQ   +E           
Sbjct: 156 VFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYE----------- 204

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EAL +FH  Q +  +  ++FT  S LSACA
Sbjct: 205 ------------------------------EALVLFHRAQ-AMGLEHNQFTISSALSACA 233

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
              A+  G Q+ A   K GI  N ++ +SLIDMY KCG +++A  VF +V+ ++V +W+ 
Sbjct: 234 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 293

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +++GF+ +    EA+  F +MQ+  + PN +T+ +VL ACSH GLV++GR +F+ M  V+
Sbjct: 294 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 353

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            V P V HY+CMVD+LGRAGLL EA +FI++MP    AS+WG+LL +C+I+ N+ELAE A
Sbjct: 354 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVA 413

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             HL E+EP N G  VLLSNIYA   +W+ V+  R  ++ S  KKE G S IE+  ++H 
Sbjct: 414 AKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHS 473

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+ GE +HP   EIY KL+++V  +K  GY     H L  VEE   QE  L  HSE+LA+
Sbjct: 474 FMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQE-LLRHHSEKLAL 532

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
            +G++ +    PIRI+KNLR+CGDCH+  KL S +  REI++RD  RFHHF+ G CSC +
Sbjct: 533 TFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGE 592

Query: 654 YW 655
           +W
Sbjct: 593 FW 594



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 56/326 (17%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++++AR      G A H  +I+     D   SN L++ Y+ CG +  A  +F  +  + 
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +VSWN+M+    Q G  EKA+ L+ +M+ E     E T+ +V+ ACA K           
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAK----------- 134

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
              +F                      C QL         H    K  +  N ++ T+L+
Sbjct: 135 -CCVFE---------------------CKQL---------HGFALKTALDSNVFVGTALL 163

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           D+Y KCG +  A  VF  +  R    WS+M+AG+       EAL LF R Q   ++ N  
Sbjct: 164 DVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQF 223

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           T ++ L AC+    + EG+    Q++ V    G+   +   + ++DM  + G+++EA   
Sbjct: 224 TISSALSACAARAALIEGK----QVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTV 279

Query: 442 ---IEKMPIVPGASVWGALLGACKIH 464
              +E+  +V    +W A+L     H
Sbjct: 280 FSSVEEKNVV----LWNAILSGFSRH 301



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 108/211 (51%), Gaps = 9/211 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           + KQ+H   L+T L  + +  + L   +  C L   ++L     +F+ +P+ +  TW+++
Sbjct: 139 ECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANL-----VFECMPERSDVTWSSM 193

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +  Y  + E  +  ++            N+FT    + A A       G+ +  +  K+ 
Sbjct: 194 VAGYVQN-ELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG 252

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              ++F+ +SLI  YA CG +  AY VF  + +K+VV WN+++SGF +     +A+  + 
Sbjct: 253 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFE 312

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           +M+   + P+++T ++VLSAC+    +E GR
Sbjct: 313 KMQQMGICPNDITYISVLSACSHLGLVEKGR 343


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/494 (42%), Positives = 317/494 (64%), Gaps = 43/494 (8%)

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           +A A+L+  R G+ +H + I++ FE  +F+ N+L+H YA CG    A+ +F ++ ++++V
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +WNS+I+G+   G                                          PNEAL
Sbjct: 63  TWNSVINGYALNG-----------------------------------------RPNEAL 81

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
           ++F E+ L + V PD FT VS+LSACA+LGA+ +G + H  M K G+  N +   +L+D+
Sbjct: 82  TLFREMGL-RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDL 140

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG++ +A +VF  ++ + V  W+++I G A+ G G+EAL+LF  ++   + P+ +TF
Sbjct: 141 YAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITF 200

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL ACSH G+VDEG  +F +M+  YG+VP ++HY CMVD+LGRAGL+ +A EFI+ MP
Sbjct: 201 VGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 260

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           + P A VW  LLGAC IH ++ L E A + LL+LEP++ G  VLLSN+YA   +W +V +
Sbjct: 261 MQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHK 320

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R+ M   G+KK PG S +E+   +H+F+ G+ SHP  +EIY KL EI   LK  GYVP+
Sbjct: 321 VRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPH 380

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S++L  +EEE+ +E AL+ HSE++AIA+ LI+     PIR+VKNLRVC DCH   KLIS
Sbjct: 381 ISNVLADIEEEE-KETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLIS 439

Query: 627 KLYNREILLRDRYR 640
           K+++REI++RDR R
Sbjct: 440 KVFDREIVVRDRSR 453



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 9/210 (4%)

Query: 45  IKQCKNIKQLKQIHTQMLRTG---LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           I +  ++++ +++H+  +R G   L F   +   ++  C        E A ++F+ + + 
Sbjct: 5   IAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG-----HAESAHKLFELMAER 59

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           NL TWN++I  Y+ +  P ++  +F ++       P+ FT   ++ A A L    +G+  
Sbjct: 60  NLVTWNSVINGYALNGRPNEALTLFREMGLRG-VEPDGFTMVSLLSACAELGALALGRRA 118

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  ++K   + +L   N+L+  YA CG +  A+ VF  + +K VVSW S+I G    GF 
Sbjct: 119 HVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFG 178

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACA 251
           ++A+EL++E+E + + P E+T V VL AC+
Sbjct: 179 KEALELFKELERKGLMPSEITFVGVLYACS 208


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 342/602 (56%), Gaps = 63/602 (10%)

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           +S    P  +  +F  L       P+  TF   + A ARL   R G+++      + ++D
Sbjct: 84  HSRRGSPASALRVFRAL--PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ +SL+H YA  G +  A  VFV + ++D V+W++M++GFV  G    AI++YR M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL------------SKN--- 277
            + VK DEV M+ V+ AC   R++  G   +  L + H +++            +KN   
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 278 ----------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK------------- 314
                     V+ ++ ++ +++S  AQ G  D  +++   M+  GI+             
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 315 ---------------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                                 NC L T+ IDMY+KCG+L  A  +F+ +  RD+ +W+ 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIA    +G G++AL LF  M E  ++P+  TF ++L A SHSGLV+EG+++F +M   +
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF 440

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            + P  KHY C+VD+L R+GL++EA + +  M   P  ++W ALL  C  ++ +EL E  
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             ++LEL+P++ G L L+SN+YA T KWD V ++RK M+ SG KK PGCSSIE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHV 560

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+  + SHP  +EI SK+ ++   ++  GY+P    +   +EEE V+EQ L+ HSERLAI
Sbjct: 561 FVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE-VKEQQLSYHSERLAI 619

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+GL++  P   + I+KNLRVCGDCH   K ISK+ +REI++RD  RFHHF+ G CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 654 YW 655
           YW
Sbjct: 680 YW 681



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 41  VFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  +I+ C   +N++    +H  +LR G+  D  +A+ L    A      L+ A  +F  
Sbjct: 212 MIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL--LDVACRVFGL 269

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   N  +W+ +I  ++ + +  ++  +F  +   S   P+       + A + +   ++
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKL 328

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+++HG +++  F+ +  +  + I  Y+ CG LA A  +F MI  +D++ WN+MI+    
Sbjct: 329 GRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGA 387

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEALSIFHELQLSK 276
            G  + A+ L++EM    ++PD  T  ++LSA +    +E G+ W    ++ F       
Sbjct: 388 HGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF------- 440

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            + P E  +V ++   A+ G ++    +   MK +
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE 475


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 341/579 (58%), Gaps = 25/579 (4%)

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C +G +     L+ AR +FD++P  +  +WN +I  Y+ +    ++  +F +L       
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL------- 272

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P    F +    +  +    + +A    + +   E +    N++I  Y     +  A  +
Sbjct: 273 PIRDVFAWTAMVSGFVQNGMLDEATR--IFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  ++  SWN+M++G+ Q G  ++A  L+ EM     + D ++  A++S  A+    
Sbjct: 331 FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP----QRDCISWAAMISGYAQSGQS 386

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           E      EAL +F +++    +  +       LS+CA++ A+++G Q+H ++ K G +  
Sbjct: 387 E------EALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTG 439

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
                +L+ MY KCG++++A +VF  +  +D+  W+TMIAG+A +G G+EAL LF  M+ 
Sbjct: 440 YIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK- 498

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             +KP+ VT   VL ACSH+G VD+G  +FN M   YG+    KHYTCM+D+LGRAG LD
Sbjct: 499 MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLD 558

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA+  ++ MP  P A+ WGALLGA +IH + EL E A   + E+EP+N G  VLLSN+YA
Sbjct: 559 EALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYA 618

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            +G+W  V E+R  MR  G+KK PG S +E+  + H F  G+ SHP  + IY+ L+E+  
Sbjct: 619 ASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDL 678

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            LK  G+V +   +L  VEEE+ +E  L  HSE+LA+A+G++S+ P +PIR++KNLRVC 
Sbjct: 679 ELKKDGFVSSTKLVLHDVEEEE-KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCE 737

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   K ISK+  R+I++RD  RFHHF  G+CSC DYW
Sbjct: 738 DCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 168/426 (39%), Gaps = 92/426 (21%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I   ++  WN  I AY    +   +  +F     N     +  T+  +I       +F  
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVF-----NGMRRRSTVTYNAMISGYLSNNKFDC 109

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            +     V +   + DL   N ++  Y   G+L+ A  +F  + +KDVVSWN+M+SGF Q
Sbjct: 110 ARK----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-------------KRDLEFGRWP-- 262
            GF E+A +++ +M ++N    E++   +LSA  +             K D E   W   
Sbjct: 166 NGFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL 221

Query: 263 ----------NEALSIFHELQLSKNVN--------------------------PDEFTFV 286
                     ++A S+F  + +   ++                           D F + 
Sbjct: 222 MGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT 281

Query: 287 SVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLT------------------------- 320
           +++S   Q G +D   +I  +M +K  +  N  +                          
Sbjct: 282 AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 321 -TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +++  Y +CGN+D+A  +F  +  RD   W+ MI+G+A  G   EAL LF +M+    
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
             N       L +C+    ++ G+    ++    G   G      ++ M G+ G ++EA 
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 440 EFIEKM 445
           +  E +
Sbjct: 461 DVFEDI 466



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 50/274 (18%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           +  C  I  L   KQ+H ++++ G      + + L      G   S+E A ++F+ I + 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA--MYGKCGSIEEAFDVFEDITEK 469

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           ++ +WNT+I  Y+      ++  +F  +       P++ T   V+ A +       G   
Sbjct: 470 DIVSWNTMIAGYARHGFGKEALALFESMKMTIK--PDDVTLVGVLSACS-----HTGFVD 522

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
            GM        + F  NS+   Y I  +     C+  ++G+                G  
Sbjct: 523 KGM--------EYF--NSMYQNYGITANAKHYTCMIDLLGR---------------AGRL 557

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           ++A+ L + M      PD  T  A+L A     D E G     A  +F        + PD
Sbjct: 558 DEALNLMKSMPF---YPDAATWGALLGASRIHGDTELG--EKAAEKVFE-------MEPD 605

Query: 282 EFTFVSVLSAC-AQLGAMDIGVQIHAKMKKQGIK 314
                 +LS   A  G      ++ +KM+ +G+K
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVK 639


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 339/580 (58%), Gaps = 50/580 (8%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           +++ C       L  A  +F+++ +  + +W ++I  Y        +  +F ++  +   
Sbjct: 397 MYSKCG-----DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM-KSRGV 450

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ +    ++ A A     + G+ +H  + +++ E + F+SN+L   YA CG +  A+ 
Sbjct: 451 VPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHD 510

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  + KKDV+SWN+MI G+ +     +A+ L+ EM+ E+ KPD  T+  +L ACA    
Sbjct: 511 VFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACA---- 565

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                                                  L A+D G +IH    + G   
Sbjct: 566 --------------------------------------SLAALDKGREIHGYALRNGYSE 587

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + Y+T +++DMY KCG L  A  +F  + ++D+  W+ MIAG+ M+G G EA++ F++M+
Sbjct: 588 DKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR 647

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
              ++P+ V+F ++L ACSHSGL+DEG   FN M+    + P ++HY CMVD+L R G L
Sbjct: 648 MTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNL 707

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
            +A +FI+ MPI P A++WGALL  C+IH +V+LAE     + ELEPEN G  VLL+NIY
Sbjct: 708 VKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIY 767

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A+  KW+ V +LRK +   GLKK PGCS IE+ G+I+ F+AG+ S P  K+I   L  + 
Sbjct: 768 AEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLR 827

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           +++K  GY P  ++ L L  +E  +E AL  HSE+LA+A+G++++ P + IR+ KNLRVC
Sbjct: 828 SKMKEEGYSPKTAYAL-LNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVC 886

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCH +AK +SK  +REI+LRD  RFHHF+ G+CSC  YW
Sbjct: 887 GDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 223/492 (45%), Gaps = 80/492 (16%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
            +  L  + K+I+  +++ + +  +G+  D     KL   +  C       L+  R +FD
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCG-----DLKEGRMVFD 209

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++ +  ++ WN +I  YS S    +S  +F Q++      PN +TF  ++K  A + +  
Sbjct: 210 KLSESKIFLWNLMISEYSGSGNYGESINLFKQML-ELGIKPNSYTFSSILKCFAAVARVE 268

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG++ K  F     + NSLI FY +   +  A  +F  +  +DV+SWNSMISG+V
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----WPNEALSIFHEL 272
           + G  ++ IE++ +M +  V  D  TMV V  ACA    L  G+    +  +A ++  E+
Sbjct: 329 KNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREV 388

Query: 273 QLSKNV------------------NPDEFTFVS--------------------------- 287
           + +  +                    DE T VS                           
Sbjct: 389 RFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSR 448

Query: 288 -----------VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                      +L+ACA  G +  G  +H  +++  ++ N +++ +L DMY KCG++  A
Sbjct: 449 GVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +K +DV  W+TMI G+       EAL LF+ MQ  + KP+  T   +L AC+  
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACASL 567

Query: 397 GLVDEGRMFFNQMEPVYGVVPGV---KHYT-CMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
             +D+GR         Y +  G    K+ T  +VDM  + GLL  A    + +P     S
Sbjct: 568 AALDKGREIHG-----YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVS 622

Query: 453 VWGALLGACKIH 464
            W  ++    +H
Sbjct: 623 -WTVMIAGYGMH 633



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 151/292 (51%), Gaps = 22/292 (7%)

Query: 39  HPVFSLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           + V S++  C    N+K  K +H  +    L  + + ++ L   +  C      S++ A 
Sbjct: 455 YAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCG-----SMKDAH 509

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++F  + + ++ +WNT+I  Y+ ++ P ++  +F ++   S   P+  T   ++ A A L
Sbjct: 510 DVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESK--PDGTTVACILPACASL 567

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ IHG  +++ + +D +++N+++  Y  CG L +A  +F MI  KD+VSW  MI
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           +G+   G+  +AI  + +M M  ++PDEV+ +++L AC+    L+ G W      IF+ +
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEG-WK-----IFNIM 681

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           +    + P+   +  ++   A+ G +   V+ H  +K   IK +  +  +L+
Sbjct: 682 KKECQIEPNLEHYACMVDLLARTGNL---VKAHKFIKAMPIKPDATIWGALL 730



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S+N N D   + S+L  CA+  ++  G ++ + ++  G+ ++  L   L+ MY KCG+L 
Sbjct: 143 SQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLK 202

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           +   VF  +    +F+W+ MI+ ++  G   E+++LF +M E  +KPN+ TF+++L   +
Sbjct: 203 EGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFA 262

Query: 395 HSGLVDEGRMFFNQMEPVYGVV--PGVKHYTCMVDML 429
               V+EGR        V+G++   G   Y  +V+ L
Sbjct: 263 AVARVEEGR-------QVHGLICKLGFNSYNTVVNSL 292


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/651 (37%), Positives = 369/651 (56%), Gaps = 35/651 (5%)

Query: 15  PVISLPRHP-NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSA 73
           P  +  RHP     LT +           +L+  C +  +  +IH   +R  +  D   A
Sbjct: 8   PSPASTRHPAGGGALTADR--------AAALLAGCASASRAAEIHAAAVRASVDQDKAVA 59

Query: 74  SKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
            +L    A      L+ A  +  + P P    + + I A+SS      +  +  +++ + 
Sbjct: 60  FRLQR--AYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSR 117

Query: 134 -PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
               P   T    + A   L    VG+A+HG  +K +   + +++ +L+  YA  G+ A 
Sbjct: 118 HGLLPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAA 174

Query: 193 AYCVF-VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           A  +F  M     VVS  +M+S + + G  + A  L+  +     + D V   A++    
Sbjct: 175 ARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALP----RKDLVCWNAMMDGYT 230

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                + GR P+EAL +F ++ L   V PDE + V  LSA AQLG  + G  +H+ +   
Sbjct: 231 -----QHGR-PSEALRLFRQM-LRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANG 283

Query: 312 G----IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCG 364
           G    ++LN  + T+L+DMY KCG+L++A+ VF  +     RDV  W+ MI G+AM+G  
Sbjct: 284 GRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRS 343

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
           REAL+ F +++   + P  +TF  VL ACSHSGLVDEGR  F  ME  YG+VP V+HY C
Sbjct: 344 REALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGC 403

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           MVD+LGRAG ++EA + ++ M   P A++W +LLGAC++H+N+ L +    +L+     N
Sbjct: 404 MVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLAN 463

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G  VLLSN+YA  GKW  V  +R  MR SG++KEPGCS++EV   + +F+AG+ SHP  
Sbjct: 464 SGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRS 523

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
            EIY+KL+E+ +  ++ G+VP+   +L  +++   +E+AL +HSE+LA+A+GLIS  P  
Sbjct: 524 AEIYAKLEEVNSIARARGHVPHTELVLHDLDDA-AKERALAVHSEKLALAFGLISTPPRT 582

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            I+IVKNLR C DCH V KL+S+   R+I+ RDR RFHHF  G+CSC DYW
Sbjct: 583 GIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/601 (39%), Positives = 349/601 (58%), Gaps = 49/601 (8%)

Query: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP-NLYTWNTLIRAYSSSAEP 119
           +L++GL  +P   ++LF   A    + LE       +   P + +  NTLIRA+++S  P
Sbjct: 50  LLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLRPSVPIDAFLVNTLIRAHAASPLP 109

Query: 120 IQSF--MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFI 176
                   F  L+  S   PN+FTFPF++KA A L  F  VG   H   +K  F  D ++
Sbjct: 110 SARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYV 169

Query: 177 SNSLIHFYAICGD--LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           SN+LIH Y+  G   L  A  VF  + K  VV+W++MI G+V+GG               
Sbjct: 170 SNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGL-------------- 215

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                       ++A+ +F E+Q S  V PDE T + VL+A A 
Sbjct: 216 ---------------------------SSDAVGLFREMQAS-GVRPDEVTVIGVLAAAAD 247

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           LGA+++   +   ++++GI  +  L  +LID   KCG++D A+ VF  ++ R V  W+++
Sbjct: 248 LGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSV 307

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I   AM G G+EA+ +F  M+ A V+P+ V F  VL ACSH+G+VDEG  +F+ M+  YG
Sbjct: 308 IDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYG 367

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++HY CMVDM GRAG+++ A+EFI  MP+ P   +W  L+ AC+ H  +EL E   
Sbjct: 368 IDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESIT 427

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
            +LL   P +    V+LSN+YA T +W   SE+R+ M   G+KK PGCS +E++GE+H+F
Sbjct: 428 RNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEF 487

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           +AG+ SHP  KEIY  ++E+   LK  G++   S +L  ++EED +E AL  HSE+LAIA
Sbjct: 488 IAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEED-KEGALQWHSEKLAIA 546

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           + L+   P   +R+VKNLRVC DCH   K IS +YNREI++RDR RFH F+ G+CSC D+
Sbjct: 547 FVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDF 606

Query: 655 W 655
           W
Sbjct: 607 W 607


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/673 (35%), Positives = 366/673 (54%), Gaps = 69/673 (10%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQI 98
           S+++ C     L   +++H  ++R     D    + L T     G   S   AR +FD++
Sbjct: 140 SVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS---ARMLFDKM 196

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  +  +WN +I  Y  + E ++   +F ++   S   P+  T   VI A   L   R+G
Sbjct: 197 PTRDRISWNAMISGYFENDECLEGLELFFRMRELS-IDPDLMTMTSVISACELLGDERLG 255

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             +H  V++++++ ++ + NSLI  Y   G    A  VF  +  +DVVSW ++ISG V  
Sbjct: 256 TQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDN 315

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE-------------- 264
              +KA+E Y+ ME+    PDEVT+ +VLSACA    L+ G   +E              
Sbjct: 316 LLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVA 375

Query: 265 ---------------ALSIFHEL-----------------------------QLSKNVNP 280
                          AL IFH++                             ++     P
Sbjct: 376 NSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKP 435

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           +  T +S LSACA++GA+  G +IHA   K G+  + +L  +++D+Y +CG +  AL  F
Sbjct: 436 NSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF 495

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
           + +  +DV  W+ ++ G+A  G G   ++LF RM E+++ P+ VTF ++LCACS SG+V 
Sbjct: 496 N-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVT 554

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG  +F +M+  Y + P +KHY C+VD+LGRAG L+EA EFIE+MPI P  ++WGALL A
Sbjct: 555 EGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNA 614

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C+IH +V L E A  H+ + + E+ G  +LL N+YA +GKWD V+++R+ M+  GL  +P
Sbjct: 615 CRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDP 674

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCS +EV G++H FL+G++ HP  +EI   L+    ++K+ G+       +  ++    +
Sbjct: 675 GCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTS--K 732

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
                 HSER AIAY LI+  P  PI + KNL +C  CH+  K ISK+  REI +RD  +
Sbjct: 733 ADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQ 792

Query: 641 FHHFRGGNCSCMD 653
           FHHF+ G CSC D
Sbjct: 793 FHHFKDGLCSCGD 805



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 187/379 (49%), Gaps = 63/379 (16%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  +  A  +F ++ + +L++WN L+  Y+ +    ++  ++ ++++ +   P+ +TFP 
Sbjct: 82  FGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW-AGIRPDVYTFPS 140

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+++ A  +    G+ +H  V++  F+ D+ + N+LI  Y  CGD+  A  +F  +  +D
Sbjct: 141 VLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRD 200

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD--------- 255
            +SWN+MISG+ +     + +EL+  M   ++ PD +TM +V+SAC    D         
Sbjct: 201 RISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHS 260

Query: 256 ---------------------LEFGRWPNEALSIFHELQLSKNVN--------------- 279
                                L  G W  EA S+F  ++    V+               
Sbjct: 261 YVVRTAYDGNISVYNSLIQMYLSVGHW-KEAESVFSGMECRDVVSWTTIISGCVDNLLPD 319

Query: 280 ---------------PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                          PDE T  SVLSACA LG +D+G+++H   ++ G  L   +  SLI
Sbjct: 320 KALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLI 379

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY+KC  ++KALE+FH +  +DV  W+++I G  +     EAL  F +M   K KPN+V
Sbjct: 380 DMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI-LKSKPNSV 438

Query: 385 TFTNVLCACSHSGLVDEGR 403
           T  + L AC+  G +  G+
Sbjct: 439 TLISALSACARVGALMCGK 457



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 62/276 (22%)

Query: 123 FMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           F+  ++L  N   Y   E+ +  V+ +   L+  R+G A+  M ++              
Sbjct: 36  FVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNALLSMFVRF------------- 82

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
                 GD+  A+ VF  +G++D+ SWN ++ G+ + GFF++A+ LY  +    ++PD  
Sbjct: 83  ------GDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVY 136

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           T  +VL +CA   DL  GR                                         
Sbjct: 137 TFPSVLRSCAGAMDLVRGR----------------------------------------- 155

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
            ++HA + +    ++  +  +LI MY KCG++  A  +F  + +RD   W+ MI+G+   
Sbjct: 156 -EVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEN 214

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
               E L+LF RM+E  + P+ +T T+V+ AC   G
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/676 (35%), Positives = 363/676 (53%), Gaps = 70/676 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++  C ++  +K+   +H  + + G+  D    + L +      F  L  AR +F ++ 
Sbjct: 227 SVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLS--MYFKFERLREARRVFSKMA 284

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  TWNT+I  Y+       S  +F+ ++    + P+  +    I+A  +    +VG+
Sbjct: 285 VKDSVTWNTMICGYAQLGRHEASVKLFMDMI--DGFVPDMLSITSTIRACGQSGDLQVGK 342

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  +I S FE D    N LI  YA CGDL  A  VF     KD V+WNS+I+G+ Q G
Sbjct: 343 FVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSG 402

Query: 220 FFEKAIELYREMEMENVKPDEVT------------------------------------- 242
           ++++ +E ++ M+ME  KPD VT                                     
Sbjct: 403 YYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGN 461

Query: 243 -MVAVLSACAKKRDL----------EFGRWPNEALSIFH------------ELQLSKNVN 279
            ++ V + C +  DL          +   W     S  H            E++ ++ + 
Sbjct: 462 SLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMR-TEGLM 520

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PDE T + +L  C+ L     G +IH  + K G + N  +  +LI+MY+KCG+L+  ++V
Sbjct: 521 PDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKV 580

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +K +DV  W+ +I+ F MYG G++AL  F  M+ + V P++V F   + ACSHSG+V
Sbjct: 581 FKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMV 640

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG  FF++M+  Y + P ++HY C+VD+L R+GLL +A EFI  MP+ P AS+WGALL 
Sbjct: 641 KEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLS 700

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+   N  +A+     +LEL  ++ G  VL+SNIYA  GKWD V  +R  M+  GLKKE
Sbjct: 701 ACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S IE+   ++ F  G+ S     ++   L+ +V  +   GYV +    L  VEE+D 
Sbjct: 761 PGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDD- 819

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +   L  HSERLAIA+GL++ +P  P+ ++KNLRVCGDCHTV K I+K+  REIL+RD  
Sbjct: 820 KRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDAN 879

Query: 640 RFHHFRGGNCSCMDYW 655
           RFH F+ G CSC D+W
Sbjct: 880 RFHRFKDGACSCGDHW 895



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 193/419 (46%), Gaps = 65/419 (15%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL--GTFSSLEYAREMFDQIPQPN 102
           +   KN  QL+ +H+ ++ +GL      + KL +  A      SS+   R +    P  N
Sbjct: 29  LSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSI---SPTNN 85

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           +Y WN++IRA + +    Q+   + ++       P+ FTFP VI + AR++   +G  +H
Sbjct: 86  VYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              ++  FE DL+I N+LI  Y+   DL  A  VF  +  +D VSWNS+ISG+   GF+E
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----------------PNEAL 266
            A+++Y +  M  + PD  TM +VL AC     ++ G                   N  L
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLL 264

Query: 267 SIFHELQ--------LSKNVNPDEFTFVSVLSACAQLGA--------------------- 297
           S++ + +         SK    D  T+ +++   AQLG                      
Sbjct: 265 SMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLS 324

Query: 298 -------------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
                        + +G  +H  +   G + +      LIDMY KCG+L  A EVF T K
Sbjct: 325 ITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTK 384

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            +D   W+++I G+   G  +E L+ F +M + + KP++VTF  +L   S    +++GR
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGR 442



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 45/328 (13%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           N+P    EF    ++K  +        + +H ++I S     +  S  LI  YA   D  
Sbjct: 12  NTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPI 71

Query: 192 MAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            +  VF  I    +V  WNS+I      G F +A+  Y EM  + ++PD  T  +V+++C
Sbjct: 72  SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSC 131

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           A+  DLE G        I HE                                 HA   +
Sbjct: 132 ARILDLELG-------CIVHE---------------------------------HA--ME 149

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            G + + Y+  +LIDMY++  +LD A  VF  + +RD   W+++I+G+   G   +ALD+
Sbjct: 150 MGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDM 209

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           + + +   + P+  T ++VL AC     V EG      +E + G+   V     ++ M  
Sbjct: 210 YHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKI-GIAGDVIIGNGLLSMYF 268

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +   L EA     KM  V  +  W  ++
Sbjct: 269 KFERLREARRVFSKMA-VKDSVTWNTMI 295



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 161/363 (44%), Gaps = 46/363 (12%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYS 72
           S  ++ + R P+  T  +          + S+  Q  +I Q + IH  +++ G   +   
Sbjct: 410 SFKMMKMERKPDSVTFVL----------LLSIFSQLADINQGRGIHCDVIKFGFEAELII 459

Query: 73  ASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
            + L    A      ++   ++F  +   ++ +WNT+I +     +    F +  ++   
Sbjct: 460 GNSLLDVYA--KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEM-RT 516

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
               P+E T   ++   + L   R G+ IHG + KS FE ++ I N+LI  Y+ CG L  
Sbjct: 517 EGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLEN 576

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
              VF  + +KDVV+W ++IS F   G  +KA++ +++ME+  V PD V  +A + AC+ 
Sbjct: 577 CIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSH 636

Query: 253 ----KRDLE-FGRWPNE---------------------ALSIFHELQLSKNVNPDEFTFV 286
               K  L  F R   +                      L+   E  LS  + PD   + 
Sbjct: 637 SGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWG 696

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI---DMYTKCGNLDKALEVFHTV 343
           ++LSAC   G  +I  ++  K+    ++LN   T   +   ++Y   G  D+   V +++
Sbjct: 697 ALLSACRARGNTNIAQRVSKKI----LELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSM 752

Query: 344 KSR 346
           K++
Sbjct: 753 KTK 755


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 349/601 (58%), Gaps = 13/601 (2%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K+IH Q++++GL       + L    A G  + L+ A  +FD++PQ +  +W +++ AY+
Sbjct: 22  KKIHAQIVKSGLNQCQPLPNTLLD--AYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYN 79

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +  P ++  IF  +       P+ F +  ++KA A L   R+G+ +H   + S F DD 
Sbjct: 80  QAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDD 139

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + +SL+  YA CG  ++A  VF  I  K  VSW +M+SG+ + G  ++A+EL+    + 
Sbjct: 140 VVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVR 199

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
           N+     +  A++S   +        +  +   +F E++       D     SV+ ACA 
Sbjct: 200 NL----YSWTALISGLVQ------SGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACAN 249

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L  + +G QIH  +   G +   +++ +L+DMY KC ++  A  VF+ +  RDV  W+++
Sbjct: 250 LAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSI 309

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G A +G  +EALDL+ +M  A++KPN VTF  ++ ACSH+GLV +GR  F  M   Y 
Sbjct: 310 IVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYR 369

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++ +TC +D+L R+G L+EA + I+ MP  P    W ALL ACK H N E+     
Sbjct: 370 ISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIA 429

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             LL L        VLLSN+YA  GKW+ +S +RK M    +K++PG SSI++  E   F
Sbjct: 430 DRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVF 489

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
            AGE+ HP+  EI+  L E+ A ++  GY+P+ S++L  +EE++ +E+ L  HSER A+A
Sbjct: 490 HAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQE-KERELFWHSERWAVA 548

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YGL+   P   IRIVKNLR+CGDCHT  KL S + ++EI++RD  R+HHF+ G CSC D+
Sbjct: 549 YGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDF 608

Query: 655 W 655
           W
Sbjct: 609 W 609



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 42/213 (19%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           +++  L  C +  A     +IHA++ K G+     L  +L+D Y KC  L  A  +F  +
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACS-------- 394
             RD   W++++  +       + L +F  M    +++P+   +  +L AC+        
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 395 ------------------HSGLVDE---------GRMFFNQMEPVYGVVPGVKHYTCMVD 427
                              S LVD           R  F+ +     +V     +T M+ 
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSI-----LVKTSVSWTAMLS 178

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
              R+GL DEA+E   + P+    S W AL+  
Sbjct: 179 GYARSGLKDEAMELFLRTPVRNLYS-WTALISG 210


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 347/569 (60%), Gaps = 12/569 (2%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           ++++ A+ +FD+    NL   N +   Y       ++  + L L+ +S   P+  +    
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGV-LNLMMDSGIRPDRISMLSA 342

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I + ++L     G++ HG V+++ FE    I N+LI  Y  C     A+ +F  +  K V
Sbjct: 343 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 402

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+WNS+++G+++ G  + A E +  M  +N+    V+   ++SA  ++   E      EA
Sbjct: 403 VTWNSIVAGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYE------EA 452

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +FH +Q  + VN D  T +S+ SAC  LGA+D+   I+  ++K  I+L+  L T+L+D
Sbjct: 453 IEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVD 512

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+++CG+ + A+ +F+++ +RDV  W+  I   AM G    A++LF+ M E  +KP+ V 
Sbjct: 513 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVV 572

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F   L AC H GLV +G+  FN ME ++GV P   HY CMVD+LGRAGLL+EA++ I+ M
Sbjct: 573 FIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDM 632

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P   +W +LL AC++  NVE+A +A   +  L PE  G+ VLLSN+YA  G+W++++
Sbjct: 633 PTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 692

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           ++R  M+  GL+K PG S I++ G+ H+F +G+ SHP  ++I + LDE+  R    G+VP
Sbjct: 693 KVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVP 752

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + S++L  V+E++ +   L+ HSE+LA+A+GLIS      IRIVKNLRVC  CH+ AK  
Sbjct: 753 DLSNVLMDVDEQE-KIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFA 811

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           SK+YNREI+LRD  RFH  R G CSC D+
Sbjct: 812 SKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 52/383 (13%)

Query: 22  HPNPTTLTVNNGHQHHPH------PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           H +P  L ++      P+         S +K CK I +LK  H  + + GL  D  + +K
Sbjct: 9   HFSPMVLAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITK 68

Query: 76  LFT-PCALGTFSSLEYAREMFDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
           L    C LGT  SL +A+E+F+        + +N+LIR Y+SS    ++ ++F++++ NS
Sbjct: 69  LVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMM-NS 127

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P+++TFPF +   A+      G  IHG++IK  +  DLF+ NSL+HFYA CG+L  A
Sbjct: 128 GISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCA 187

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL-YREMEMENVKPDEVTMVAVLSACAK 252
             VF  + +++VVSW SMI G+ +  F + A++L +R +  E+V P+ VTMV V+SACAK
Sbjct: 188 RKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAK 247

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
             DLE G                                           +++  ++  G
Sbjct: 248 LEDLETGE------------------------------------------KVYDFIRDSG 265

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           I++N  + ++L+DMY KC  +D A  +F    + ++ + + M + +   G  +EAL + +
Sbjct: 266 IEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLN 325

Query: 373 RMQEAKVKPNAVTFTNVLCACSH 395
            M ++ ++P+ ++  + + +CS 
Sbjct: 326 LMMDSGIRPDRISMLSAISSCSQ 348



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 206/453 (45%), Gaps = 39/453 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTF----SSLEYAREMFDQIPQPNLYTWNTLIR 111
           QIH      GL      A  LF   +L  F      L+ AR++FD++ + N+ +W ++I 
Sbjct: 154 QIH------GLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMIC 207

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+       +  +F ++V +    PN  T   VI A A+L     G+ ++  +  S  E
Sbjct: 208 GYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIE 267

Query: 172 -DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
            +DL IS +L+  Y  C  + +A  +F   G  ++   N+M S +V+ G  ++A+ +   
Sbjct: 268 VNDLMIS-ALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNL 326

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M    ++PD ++M++ +S+C++ R++ +G+         H   L       +    +++ 
Sbjct: 327 MMDSGIRPDRISMLSAISSCSQLRNILWGK-------SCHGYVLRNGFESWDNICNALID 379

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
              +    D   +I  +M  + +        S++  Y + G +D A E F+T+  +++  
Sbjct: 380 MYMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYIENGEVDAAWETFNTMPEKNIVS 435

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           W+T+I+         EA+++F  MQ  + V  + VT  ++  AC H G +D  +  +  +
Sbjct: 436 WNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYI 495

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
           E    +   V+  T +VDM  R G  + A+     +      S W A +GA  +  NVE 
Sbjct: 496 EK-NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAWTAAIGAMAMAGNVER 553

Query: 470 AEYACSHLLE--LEPEN-----------HGALV 489
           A    + ++E  L+P+            HG LV
Sbjct: 554 AIELFNEMIEQGLKPDGVVFIGALTACCHGGLV 586



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 3/182 (1%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EA+ +F  + ++  ++PD++TF   LS CA+      G+QIH  + K     + ++  SL
Sbjct: 116 EAILLFIRM-MNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSL 174

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPN 382
           +  Y +CG LD A +VF  +  R+V  W++MI G+A     ++A+DLF RM ++  V PN
Sbjct: 175 VHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPN 234

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
           +VT   V+ AC+    ++ G   ++ +    G+       + +VDM  +   +D A    
Sbjct: 235 SVTMVCVISACAKLEDLETGEKVYDFIRD-SGIEVNDLMISALVDMYMKCNAIDIAKRLF 293

Query: 443 EK 444
           ++
Sbjct: 294 DE 295



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 48/210 (22%)

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSRDV-FVWSTMIAGFAM 360
           H  + KQG+  +    T L+    + G   +L  A EVF   +S    F+++++I G+A 
Sbjct: 51  HLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYAS 110

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS------------------------ 396
            G  +EA+ LF RM  + + P+  TF   L  C+ S                        
Sbjct: 111 SGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFV 170

Query: 397 -----------GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                      G +D  R  F++M         V  +T M+    R     +AV+   +M
Sbjct: 171 QNSLVHFYAECGELDCARKVFDEMSE-----RNVVSWTSMICGYARREFAKDAVDLFFRM 225

Query: 446 ----PIVPGASVWGALLGACKIHENVELAE 471
                ++P +     ++ AC   E++E  E
Sbjct: 226 VRDEDVIPNSVTMVCVISACAKLEDLETGE 255


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 350/625 (56%), Gaps = 49/625 (7%)

Query: 34  HQHHPHPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAR 92
           H H   P + SL+     +  LKQ H +++ +G        +KL T        +  YA 
Sbjct: 5   HHHRRSPEYNSLLLAGARLGPLKQAHARLVVSGHAHSLPLTTKLAT--LAVAAGAASYAG 62

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +    P P+ + + +L RA +    P  +   + +L+  +  F + F F  V KA A L
Sbjct: 63  LLAASHPSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPF-SSFAFTSVAKACADL 121

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              R G  +H   +   F  D F+  +L+  Y+ CG L +A  +F  I  + VV+WN+MI
Sbjct: 122 SALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMI 181

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           SG+ Q G   +AIE+YREM                            R   EA       
Sbjct: 182 SGYEQNGLAGRAIEVYREM----------------------------RVAGEA------- 206

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                  PD  TFV+ LSACAQ GA+D+G ++   +  + +++N  L  +L++MY +CG 
Sbjct: 207 -------PDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGL 259

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           ++KA E F  ++ R+V  W++MIAG+ M+G G EA+ LF  M++    PN VTF  VL A
Sbjct: 260 VNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSA 319

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGA 451
           C+H+GLV +GR  F  M+ VYG+VP  +HY  MVDM GRAGLLD+A++FI + +P  PG 
Sbjct: 320 CAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGP 379

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            VW A+LGACK+H+N  L       L+ LEPEN    VLLSNIYA +GK ++V ++R  M
Sbjct: 380 EVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTM 439

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
               LKK  G S IE+ G  H F  GE SHP   EIY  L++++ R+   GY+P    +L
Sbjct: 440 IKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPETDSVL 499

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEP-SQPIRIVKNLRVCGDCHTVAKLISKLYN 630
             +EEE  +E AL  H E+LA+A+GL+     + PIRI+KNLR+CGDCH   K +S + N
Sbjct: 500 HELEEE-EREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICGDCHLAIKYMSAVEN 558

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD +RFHHF+ G CSC +YW
Sbjct: 559 REIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/686 (36%), Positives = 368/686 (53%), Gaps = 68/686 (9%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           GH+ +P    +++K   + +  K    +H  + + G   D +  + L    ++  ++  E
Sbjct: 140 GHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYA--E 197

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            AR++FD I   ++ +W  ++  Y  +    +S  +F ++     + PN FTF  V+KA 
Sbjct: 198 CARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRI-VGFKPNNFTFASVLKAC 256

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
             L  F VG+A+HG   K+S+ ++LF+   LI  Y   GD+  A  VF  + K DV+ W+
Sbjct: 257 VGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWS 316

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV------------------------- 244
            MI+ + Q    E+AIE++  M    V P++ T+                          
Sbjct: 317 FMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV 376

Query: 245 ----------AVLSACAKKRDLE-----FGRWPN--------------------EALSIF 269
                     A++   AK   +E     F   PN                    +AL +F
Sbjct: 377 GLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILF 436

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
            ++ L   V   E T+ SVL ACA + A++ G QIH+   K     N  +  +LIDMY K
Sbjct: 437 KDM-LECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAK 495

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CGN+  A  VF  ++  D   W+ MI+G++++G   EAL  F  M E + KP+ VTF  +
Sbjct: 496 CGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGI 555

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACS++GL+D G+ +F  M   Y + P  +HYTCMV +LGR+G LD+A + + ++P  P
Sbjct: 556 LSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEP 615

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              VW ALL AC IH +VEL   +   +LE+EPE+    VLLSNIYA   +W NV+ +R 
Sbjct: 616 SVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRT 675

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            M+  G++KEPG S IE  G +H F  G++SHP  K I   L+ +  + ++ GYVP+ S 
Sbjct: 676 SMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSS 735

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  VE+ D +EQ L +HSERLA+AYGLI      P+RI+KNLR+C DCH   KLISK+ 
Sbjct: 736 VLLDVEDVD-KEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIV 794

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            R+I++RD  RFHHF  G CSC DYW
Sbjct: 795 QRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 225/497 (45%), Gaps = 75/497 (15%)

Query: 37  HPHPVF------SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS 87
           H  P F      SL++ C    +    K +H ++++ G   D ++ + L        + S
Sbjct: 37  HSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYV--KYDS 94

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A ++FD++P  N  ++ TLI+ YS      ++  +F +L     +  N F F  V+K
Sbjct: 95  LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRL-QGEGHELNPFVFSTVLK 153

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
                   ++G ++H  V K  F+ D F+  +LI  Y++CG    A  VF  I  KD+VS
Sbjct: 154 LLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------ 261
           W  M++ +V+   FE++++L+  M +   KP+  T  +VL AC        G+       
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAF 273

Query: 262 -----------------------PNEALSIFHEL-------------------------- 272
                                   ++AL +F E+                          
Sbjct: 274 KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIE 333

Query: 273 ---QLSKN-VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
              ++ +  V P++FT  S+L ACA L  + +G QIH  + K G+ +N +++ +L+DMY 
Sbjct: 334 MFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYA 393

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG ++ +L++F    +     W+T+I G+   G G +AL LF  M E +V+   VT+++
Sbjct: 394 KCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSS 453

Query: 389 VLCACSHSGLVDEGRMFFN-QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           VL AC+    ++ G    +  ++ +Y     V +   ++DM  + G + +A   +  M  
Sbjct: 454 VLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFDMLR 510

Query: 448 VPGASVWGALLGACKIH 464
                 W A++    +H
Sbjct: 511 EHDQVSWNAMISGYSVH 527



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 263 NEALSIFHE----LQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           N AL I  +     Q + + +P+  T++  S+L +C + G    G  +H ++ K+G  L+
Sbjct: 19  NTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLD 78

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            +    L++ Y K  +L  A ++F  +  R+   + T+I G++      EA+ LFSR+Q 
Sbjct: 79  LFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQG 138

Query: 377 AKVKPNAVTFTNVL 390
              + N   F+ VL
Sbjct: 139 EGHELNPFVFSTVL 152


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/655 (37%), Positives = 363/655 (55%), Gaps = 56/655 (8%)

Query: 7   QHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL 66
           + + +  +P++       P         QH  H    L+++      + Q    +L++GL
Sbjct: 15  RRIASAPSPLLHRTGLSPPADCGARAAEQHCLH----LLERSSAPAAVLQSLAFLLKSGL 70

Query: 67  FFDPYSASKLFTPCALGTFSSLE--YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM 124
             +P   ++LF   A    + LE   A  +   +P  + +  NTLIRA+++S  P     
Sbjct: 71  HANPLVLTRLFASSAAAAPALLEPLVAALLVPSVPI-DAFLANTLIRAHAASPLPSARLR 129

Query: 125 I--FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
              F  L+  S   PN+FTFPF++KA A      VG   H   +K  F  D ++SN+LIH
Sbjct: 130 AASFFPLMLRSATLPNKFTFPFLLKACAAFPG--VGVQAHAAALKFGFTTDQYVSNTLIH 187

Query: 183 FYAICGD--LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
            Y+  G   L  A  VF  + K   V+W++MI G+V+ G                     
Sbjct: 188 MYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGL-------------------- 227

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                                 ++A+ +F E+Q S  V PDE T + VL+A A LGA+++
Sbjct: 228 ---------------------SSDAVGLFREMQAS-GVRPDEVTMIGVLAAAADLGALEL 265

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
              +   ++K+GI  +  L  +LID   KCG+LD A+ VF  +K R +  W+++I   AM
Sbjct: 266 ARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAM 325

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G G+EA+ +F  M+ A V+P+ V F  VL ACSH+G+VDEG  +F  M   YG+ P ++
Sbjct: 326 EGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIE 385

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVDM GRAG+++ A+EF+ KMP+ P   +W  L+ AC+ H  +EL E    +LL  
Sbjct: 386 HYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNE 445

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
            P +    V+LSN+YA T +W   SE+R+ M   G+KK PGCS +E++GE+H+F+AG+ S
Sbjct: 446 YPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDES 505

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HP  KEIY  ++E+   L+  G++   S +L  ++EED +E AL  HSE+LAIA+ L+  
Sbjct: 506 HPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEED-KEVALQWHSEKLAIAFVLLRT 564

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P   +R+VKNLRVC DCH   K IS +YNREI++RDR RFH F+ G+CSC D+W
Sbjct: 565 PPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 325/571 (56%), Gaps = 48/571 (8%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  L+ A  +FD++P+ N+ TW T++ A +++    +  + FL  ++     PN +TF  
Sbjct: 128 FGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSS 187

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+ A        V  A+H   +K   + D+F+ +SLI  Y   GDL     VF  +  +D
Sbjct: 188 VLGACG---TPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRD 244

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +V WNS+I+GF Q G    AIEL+  M                      +D  F      
Sbjct: 245 LVVWNSIIAGFAQSGDGVGAIELFMRM----------------------KDAGF------ 276

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                         + ++ T  SVL AC  +  ++ G Q+HA + K   + +  L  +L+
Sbjct: 277 --------------SANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALL 320

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+L+ A  +FH +  RDV  WSTMI+G A  G   EAL +F  M+   V PN +
Sbjct: 321 DMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRI 380

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL ACSH+GLV++G  +F  M+ ++G+ P  +H+ CMVD+LGRAG LDEAVEFI  
Sbjct: 381 TMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRD 440

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M + P A +W  LLGAC++H++  LA YA   +L+LEP++ GA VLLSN YA   +W + 
Sbjct: 441 MNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDA 500

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
            +  K MR  G+KKEPG S IE+   +H F+AG+ SHP    I  +L+ ++ R+ + GYV
Sbjct: 501 EKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYV 560

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P    +LQ +  E  +E  L  HSE++AIA+G +     +PIRI+KNLR+CGDCH  AKL
Sbjct: 561 PQTEFVLQDLAIEQ-KEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKL 619

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +SK   R I++RD  RFHHF+ G CSC DYW
Sbjct: 620 VSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 54/345 (15%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S++  C     L  +H   ++ GL  D +  S L    A      L+  R +FD++   +
Sbjct: 187 SVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLID--AYMKLGDLDGGRRVFDEMVTRD 244

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           L  WN++I  ++ S + + +  +F+++  ++ +  N+ T   V++A   +V    G+ +H
Sbjct: 245 LVVWNSIIAGFAQSGDGVGAIELFMRM-KDAGFSANQGTLTSVLRACTGMVMLEAGRQVH 303

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
             V+K  +E DL + N+L+  Y  CG L  A  +F  + ++DV+SW++MISG  Q G   
Sbjct: 304 AHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSA 361

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           +A+ ++  M+ E V P+ +TMV VL AC+    +E G +       F  ++    + P+ 
Sbjct: 362 EALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWY------YFRSMKKLFGIQPER 415

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
                               + H          NC     ++D+  + G LD+A+E    
Sbjct: 416 --------------------EHH----------NC-----MVDLLGRAGKLDEAVEFIRD 440

Query: 343 VK-SRDVFVWSTMIAGFAMYGCG-------REALDLFSRMQEAKV 379
           +    D  +W T++    M+  G       RE L L    Q A+V
Sbjct: 441 MNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARV 485



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 159/366 (43%), Gaps = 46/366 (12%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK---- 147
           + +F + P+  L       R   +   P  S  IF +L    P FP        +     
Sbjct: 10  KSLFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGP-FPAALALLPDLAAAGL 68

Query: 148 -----AAARLVQF--RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
                +  RLV+   R G A  G +I    E        L H+    G       +FV  
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVE----AHGQLSHYSGGAGG-----GIFVS- 118

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
                   NS++S + + G  + A+ L+  M   NV    VT   V++A A       GR
Sbjct: 119 --------NSLVSMYAKFGLLDDALRLFDRMPERNV----VTWTTVVAALANAD----GR 162

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
              EAL  F        V P+ +TF SVL AC   G +     +HA   K G+  + ++ 
Sbjct: 163 -KEEALR-FLVAMWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVR 217

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           +SLID Y K G+LD    VF  + +RD+ VW+++IAGFA  G G  A++LF RM++A   
Sbjct: 218 SSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS 277

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            N  T T+VL AC+   +++ GR        V      +  +  ++DM  + G L++A  
Sbjct: 278 ANQGTLTSVLRACTGMVMLEAGRQVHAH---VLKYERDLILHNALLDMYCKCGSLEDAEA 334

Query: 441 FIEKMP 446
              +MP
Sbjct: 335 LFHRMP 340


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 339/614 (55%), Gaps = 51/614 (8%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY---AREMFDQIPQP 101
           I  C ++     IH +++++  + D +   +L +      +  L Y   A+ +FD++P  
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVS-----MYFKLGYDEDAQRLFDEMPNK 183

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L +WN+L+   S           F ++   S   PNE T   V+ A A +     G+++
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG+V+K        + NSLI+ Y   G L  A  +F  +  + +VSWNSM+      G+ 
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           EK ++L+  M+                                             +NPD
Sbjct: 304 EKGMDLFNLMK------------------------------------------RAGINPD 321

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           + T V++L AC   G       IHA + + G   +  + T+L+++Y K G L+ + ++F 
Sbjct: 322 QATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 381

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K RD   W+ M+AG+A++ CGREA+ LF  M +  V+ + VTFT++L ACSHSGLV+E
Sbjct: 382 EIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 441

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ +F  M  VY V P + HY+CMVD+LGR+G L++A E I+ MP+ P + VWGALLGAC
Sbjct: 442 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC 501

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           +++ NVEL +     LL L+P +H   ++LSNIY+  G W + S++R  M+   L + PG
Sbjct: 502 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPG 561

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
           CS IE   +IH+F+ G+  HP   EI++KL+E++ +++  G  P    +L  ++EE V+ 
Sbjct: 562 CSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEE-VKV 620

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
             +N HSE+LAIA+GL+      P+ I KNLR+CGDCH+ AK  S L  R I++RD  RF
Sbjct: 621 DMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRF 680

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G CSC DYW
Sbjct: 681 HHFADGLCSCRDYW 694


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 345/613 (56%), Gaps = 20/613 (3%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT-PCALGTFSSLEYAREMFDQIPQPNLYT 105
            C  +   KQ+H  + R  L    Y  + L      L       Y   +F Q+  PN + 
Sbjct: 20  HCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFL 79

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           ++ LIRAY+ +     S  ++  ++ N+   P  FTF  +    + L    +G  +H   
Sbjct: 80  YSALIRAYARNGPFHHSIRLYTSML-NNNVSPVSFTFSALF---SLLKNPSLGSQLHLHA 135

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
               F +DL++ N++IH Y   G L  A  VF  +  +DVV+W  +I  + + G  + A 
Sbjct: 136 FLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSAC 195

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           EL+  + ++    D V   ++++  ++         P +AL  F +++    V  DE T 
Sbjct: 196 ELFVGLPVK----DMVAWTSMVTGYSQNA------MPKKALQFFRKMR-EAGVVTDEITL 244

Query: 286 VSVLSACAQLGAMDIGVQIH--AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           V  +SACAQLG       I   A+  + G   N ++ ++LIDMY+KCGN+++A  VF  +
Sbjct: 245 VGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           K  +VF +S+MI GFA++G  R A+ LF  M E  +KPN VTF  +  ACSH+G+V++G+
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQ 364

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             F  M+  YGV P   HY CM D+LGRAG L++A++ ++ MP+ P   VWGALLGA  I
Sbjct: 365 QLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHI 424

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H N ++AE A   L ELEP+N G  +LLS  YA   KWD+VS +RK MR   L+K PGCS
Sbjct: 425 HGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCS 484

Query: 524 SIEV-NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
            +E  NG IH+F AG+  HP   EI   LD+++ RLK  GY P  + +   +++E  +  
Sbjct: 485 WVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEG-KRC 543

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSE+LA+AYGL+S +    I+I+KNLR+C DCH V    SKL  R+I++RD  RFH
Sbjct: 544 LLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFH 603

Query: 643 HFRGGNCSCMDYW 655
           HF  G CSC ++W
Sbjct: 604 HFLNGACSCNNFW 616


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 349/610 (57%), Gaps = 59/610 (9%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           KQ+H   +++GL  D   A+ L             +ARE+F+ +   +L +WN++I + +
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVN--MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 363

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI-----KAAARLVQFRVGQAIHGMVIKSS 169
            S+   +S  +F+ L++     P+ FT   +      KA   LV    G+ IH   IK+ 
Sbjct: 364 QSSLEEESVNLFIDLLHEGLK-PDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAG 422

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           F+ DL +++ ++  Y  CGD+  A  VF  I                             
Sbjct: 423 FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA--------------------------- 455

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
                   PD+V   +++S C    +       ++AL I+H ++ S+ V PDE+TF +++
Sbjct: 456 --------PDDVAWTSMISGCVDNGN------EDQALRIYHRMRQSR-VMPDEYTFATLI 500

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKCGNLDKALEVFHTVKS 345
            A + + A++ G Q+HA +    IKL+C    ++ TSL+DMY KCGN++ A  +F  +  
Sbjct: 501 KASSCVTALEQGRQLHANV----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 556

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           R++ +W+ M+ G A +G   EA++LF  M+   ++P+ V+F  +L ACSH+GL  E   +
Sbjct: 557 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 616

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
            + M   YG+ P ++HY+C+VD LGRAGL+ EA + IE MP    AS+  ALLGAC+I  
Sbjct: 617 LHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQG 676

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           +VE  +   + L  LEP +  A VLLSNIYA   +WD+V++ RK M+   +KK+PG S I
Sbjct: 677 DVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWI 736

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           +V   +H F+  + SHP    IY K++E++  ++  GYVP+   +L  VE+E+ +E++L 
Sbjct: 737 DVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE-KERSLY 795

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LAIAYGLIS   S  IR++KNLRVCGDCH   K ISK++ REI+LRD  RFHHFR
Sbjct: 796 YHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFR 855

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 856 DGVCSCGDYW 865



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 224/493 (45%), Gaps = 88/493 (17%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K  H +++ +G   D + ++ L T        SL  AR++FD  P+ +L TWN ++ AY+
Sbjct: 97  KCTHARIVVSGSAGDHFLSNNLLT--MYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 115 SSAEP----IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           +S +      Q  +   +L+  S       T   V+K           + +HG  IK   
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E D+F+S +L++ Y+ CG +  A  +F  + ++DVV WN M+ G+VQ G  ++A +L+ E
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 231 MEMENVKPDEVTMVAVLSAC--AKKRDLEFGRW----------------PNEALSIFHEL 272
                ++PDE ++  +L+ C  A   DLE G+                  N  ++++ ++
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 273 Q---LSKNV-----NPDEFTFVSVLSACAQ------------------------------ 294
                ++ V     + D  ++ S++S+CAQ                              
Sbjct: 335 GCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASIT 394

Query: 295 ----------LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
                     L  +D G QIHA   K G   + ++ + ++DMY KCG++  A  VF+ + 
Sbjct: 395 LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS 454

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
           + D   W++MI+G    G   +AL ++ RM++++V P+  TF  ++ A S    +++GR 
Sbjct: 455 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 514

Query: 405 FFNQM-------EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
               +       +P  G        T +VDM  + G +++A    +KM  V   ++W A+
Sbjct: 515 LHANVIKLDCVSDPFVG--------TSLVDMYAKCGNIEDAYRLFKKMN-VRNIALWNAM 565

Query: 458 LGACKIHENVELA 470
           L     H N E A
Sbjct: 566 LVGLAQHGNAEEA 578



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 15/249 (6%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           + Q KQIH   ++ G   D +  S    ++  C       +  A  +F+ I  P+   W 
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG-----DMVNAGIVFNYISAPDDVAWT 462

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           ++I     +    Q+  I+ ++   S   P+E+TF  +IKA++ +     G+ +H  VIK
Sbjct: 463 SMISGCVDNGNEDQALRIYHRM-RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 521

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
                D F+  SL+  YA CG++  AY +F  +  +++  WN+M+ G  Q G  E+A+ L
Sbjct: 522 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 581

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           ++ M+   ++PD V+ + +LSAC+           +EA    H +     + P+   +  
Sbjct: 582 FKSMKSHGIEPDRVSFIGILSACSH------AGLTSEAYEYLHSMPNDYGIEPEIEHYSC 635

Query: 288 VLSACAQLG 296
           ++ A  + G
Sbjct: 636 LVDALGRAG 644



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 135/318 (42%), Gaps = 39/318 (12%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++ A       +G+  H  ++ S    D F+SN+L+  Y+ CG L+ A  VF    ++D
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +V+WN                                   A+L A A   D   G    E
Sbjct: 143 LVTWN-----------------------------------AILGAYAASVDSNDGN-AQE 166

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
            L +F  L+ S   +    T   VL  C   G +     +H    K G++ + +++ +L+
Sbjct: 167 GLHLFRLLRASLG-STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALV 225

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           ++Y+KCG +  A  +F  ++ RDV +W+ M+ G+   G  +EA  LFS    + ++P+  
Sbjct: 226 NIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEF 285

Query: 385 TFTNVLCACSHSGLVD-EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +   +L  C  +G  D E     + +    G+   V     +V+M  + G    A E   
Sbjct: 286 SVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFN 345

Query: 444 KMPIVPGASVWGALLGAC 461
            M  +   S W +++ +C
Sbjct: 346 DMKHLDLIS-WNSMISSC 362


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/479 (45%), Positives = 311/479 (64%), Gaps = 16/479 (3%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           NS+IH YA+ GD+  A  +F  +     V+W SM++GF + G  E A  ++ EM     +
Sbjct: 81  NSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMP----E 136

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            D V+  A++S C   R       P EAL +F  + + +   P+  T VSVLSAC   GA
Sbjct: 137 RDLVSWNAMISGCVGNR------LPVEALCLFRWM-MEEGFVPNRGTVVSVLSACTGAGA 189

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           ++ G  +H  ++K+ ++ + +L T+L+DMY KCG ++ ALEVF  +++R+   W+ MI G
Sbjct: 190 LETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMING 249

Query: 358 FAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
            AM G   +ALD+F +M+    V P+ VTF  VL ACSH+G VD G+  F  +   YGV 
Sbjct: 250 LAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVE 309

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
             ++HY CMVD+L R+G L EA + I +MP+ P   VW ALLG C++H+NV++AE   S 
Sbjct: 310 LILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVIS- 368

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
             E+E    G  VLLSN+YA  G+W+ V ++R+ MR  G++K PGCSS+E++G IH+F++
Sbjct: 369 --EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFIS 426

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           G+ SHP   +I++KL EI  R++  GYV   + +   +E+E+ +EQAL  HSE+LAIA+G
Sbjct: 427 GDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEE-KEQALGYHSEKLAIAFG 485

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LI   P   IRIVKNLR C DCH+ AKL+SK+Y+REI++RDR RFHHFRGG CSC D+W
Sbjct: 486 LIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 47/321 (14%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             +E AR +F+++P+ +L +WN +I     +  P+++  +F + +    + PN  T   V
Sbjct: 122 GDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLF-RWMMEEGFVPNRGTVVSV 180

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A         G+ +H  V K     D F+  +L+  YA CG + +A  VF  +  ++ 
Sbjct: 181 LSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNT 240

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            +WN+MI+G    G+  KA++++R+ME+   V PDEVT V VL A               
Sbjct: 241 CTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLA--------------- 285

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ-IHAKMKKQGIKLNCYLTTSL 323
                                      C+  G +D G +  +   +K G++L       +
Sbjct: 286 ---------------------------CSHAGFVDAGKEHFYTIPQKYGVELILEHYACM 318

Query: 324 IDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           +D+  + G+L +A ++   +  + DV VW  ++ G  ++   + A ++ S M EA    +
Sbjct: 319 VDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEM-EATCSGD 377

Query: 383 AVTFTNVLCACSHSGLVDEGR 403
            V  +N+  A      V++ R
Sbjct: 378 HVLLSNLYAAVGRWNGVEDVR 398



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +HA   K G  L      + I  Y   G +  A  VF  +  RD   +++MI G+A+ G 
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
              A  LF R+    + P  VT+T+++     +G V+  R  F +M
Sbjct: 93  VGSAQRLFERV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEM 134



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           V S++  C     L   K +H  + +  L +D +  + L   +  C      ++E A E+
Sbjct: 177 VVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCG-----AVELALEV 231

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F  +   N  TWN +I   + +    ++  +F Q+  N    P+E TF  V+ A +    
Sbjct: 232 FTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGF 291

Query: 155 FRVGQAIHGMVIKSSFEDDLFISN--SLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNSM 211
              G+  H   I   +  +L + +   ++   A  G L  A+ +   M  K DVV W ++
Sbjct: 292 VDAGKE-HFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRAL 350

Query: 212 ISG 214
           + G
Sbjct: 351 LGG 353


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/740 (35%), Positives = 384/740 (51%), Gaps = 112/740 (15%)

Query: 24  NP-TTLTVNNGHQHHPHP----VF-SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS 74
           NP T LT     Q H  P     F +L+K C  +++L    Q+H  + R GL  D +SA+
Sbjct: 32  NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAA 91

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
            L    A G      YA ++FD++P+   ++ +W  LI AYSS+    ++F  F ++ + 
Sbjct: 92  ALVD--AYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWM 149

Query: 133 SPYFPNEFTFPFVIKAAARLVQ---------FRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
             +  +E     V+   A +            R G A+HG+V+K  F     + NS++H 
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 184 YAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN------ 235
           Y+ C D+  A+ VF  + I ++DVVSWNS+ISGF   G  E+A+  + +M  E       
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 236 ------------------------------------VKPDEVTMVAVLSACAKKRDLEFG 259
                                               V  D V + A+L   A+  +L   
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 260 R-------------W------------PNEALSIFHELQLSKN-----VNPDEFTFVSVL 289
           R             W            P EAL +F ++ +  N     V P+  T VSV+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRD 347
           +AC++LGA      IH      G+  +  + ++LIDM  KCG+++   +VF  +   +R 
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRT 449

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  WS+MI    ++G G+ AL+LFS M+    +PN +T+ +VL ACSH+GLV++G+  FN
Sbjct: 450 VVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFN 509

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            ME  YG+ P  KHY C+VD+LGRAG LDEA   I  MPI    ++WG+LL AC +H N 
Sbjct: 510 SMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNC 569

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           +L E     +L L+  + G  VLL+N+Y   G+WD+V  +R  +R SGL+K PG S IE+
Sbjct: 570 KLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL- 586
             E++ F+A + SHP  + IY +LD +  R++        + L   VE+ D+    L   
Sbjct: 630 GNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTETGL--NVEDGDIAGLILRCK 687

Query: 587 -HSERLAIAYGLI----------SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
            HSERLAIA+GLI          S+  + PIRI KNLRVC DCH   KL+SK+ +RE+++
Sbjct: 688 YHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIV 747

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD +RFHHFR G CSC DYW
Sbjct: 748 RDAHRFHHFRDGFCSCGDYW 767



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 181/455 (39%), Gaps = 90/455 (19%)

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I   + + WN+LI A +++  P Q+ + F   +       N FTFP ++KA A L +  
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISG 214
               +H  + +     D F + +L+  Y  CG    A  VF  +  G  DVVSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 215 FVQGGFFEKAIELYREMEM-------ENVKPDEVTMVAVLSACAK-------KR------ 254
           +   G  ++A + +  M         E    D V++ A++SACA        +R      
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 255 ---DLEFGRWPNEALSIFHELQLSKNVNP-------------DEFTFVSVLSACAQLGAM 298
                 FG   +   S+ H     K+V               D  ++ S++S     G  
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 299 DIGVQIHAKMKKQGI------------------KLNCYLTTSLIDMY------------- 327
           +  ++    M  +G                   +L C  T+S +  Y             
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 328 -----------TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR--- 373
                       +CGNL  A E+F  V+ ++V  WS MIAG+    C  EAL LF +   
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 374 ---MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
              M   +VKPNAVT  +V+ ACS  G      M  ++     G+    +  + ++DM  
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRSASM-IHKYAVATGLDQDARIASALIDMCA 428

Query: 431 RAGLLDEAVEFIEKMPIVPGASV-WGALLGACKIH 464
           + G ++   +   +M       V W +++GA  IH
Sbjct: 429 KCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 346/618 (55%), Gaps = 58/618 (9%)

Query: 45   IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFS---SLEYAREMFDQI 98
            +  C N+  L   + +H Q ++       +S   +F    L  +S   +L  A + F+++
Sbjct: 661  VAACANVGSLSLGRALHGQGVKA-----CFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 99   PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             Q  + +W +LI AY        +  +F ++  +    P+ ++   V+ A A       G
Sbjct: 716  GQKTVVSWTSLIAAYVREGLYDDAIRLFYEM-ESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 159  QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            + +H  + K++    L +SN+L+  YA CG +  AY VF  I  KD+VSWN+MI G+ + 
Sbjct: 775  RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 219  GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
                                                       PNEAL +F E+Q  K  
Sbjct: 835  SL-----------------------------------------PNEALKLFAEMQ--KES 851

Query: 279  NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             PD  T   +L AC  L A++IG  IH  + + G     ++  +LIDMY KCG+L  A  
Sbjct: 852  RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARL 911

Query: 339  VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            +F  +  +D+  W+ MI+G  M+G G EA+  F +M+ A +KP+ +TFT++L ACSHSGL
Sbjct: 912  LFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGL 971

Query: 399  VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            ++EG  FFN M     + P ++HY CMVD+L R G L +A   IE MPI P A++WGALL
Sbjct: 972  LNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALL 1031

Query: 459  GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
              C+IH +VELAE    H+ ELEP+N G  VLL+NIYA+  KW+ V +LR+ +   GLKK
Sbjct: 1032 CGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKK 1091

Query: 519  EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
             PGCS IEV G+   F++ +++HP  K I+S L+ +  ++K+ G+ P   +   L+   D
Sbjct: 1092 SPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRY--ALINAGD 1149

Query: 579  VQEQ-ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            ++++ AL  HSE+LA+A+G++++   + IR+ KNLRVC DCH +AK +SK   REI+LRD
Sbjct: 1150 MEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRD 1209

Query: 638  RYRFHHFRGGNCSCMDYW 655
              RFHHF+ G CSC D+W
Sbjct: 1210 SNRFHHFKDGFCSCRDFW 1227



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 191/425 (44%), Gaps = 54/425 (12%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
            +  L  + K +++ K +H+ +   G+  +    +KL   +  C      +L   R +FD
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG-----ALREGRRIFD 510

Query: 97  QIPQPN-LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            I   N ++ WN ++  Y+   +  +S  +F ++        N +TF  ++K  A L + 
Sbjct: 511 HILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKM-QKLGITGNSYTFSCILKCFATLGRV 569

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
              + IHG V K  F     + NSLI  Y   G++  A+ +F  +G +DVVSWNSMISG 
Sbjct: 570 GECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V  GF   A+E + +M +  V  D  T+V  ++ACA                        
Sbjct: 630 VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACA------------------------ 665

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                              +G++ +G  +H +  K           +L+DMY+KCGNL+ 
Sbjct: 666 ------------------NVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLND 707

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++ F  +  + V  W+++IA +   G   +A+ LF  M+   V P+  + T+VL AC+ 
Sbjct: 708 AIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACAC 767

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
              +D+GR   N +     +   +     ++DM  + G ++EA     ++P+    S W 
Sbjct: 768 GNSLDKGRDVHNYIRK-NNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS-WN 825

Query: 456 ALLGA 460
            ++G 
Sbjct: 826 TMIGG 830



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 15/197 (7%)

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           L++S+    D   + S+L  CA+   +  G  +H+ +   GI +   L   L+ MY  CG
Sbjct: 441 LRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG 500

Query: 332 NLDKALEVF-HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
            L +   +F H +    VF+W+ M++ +A  G  RE++ LF +MQ+  +  N+ TF+ +L
Sbjct: 501 ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL 560

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVV--PGVKHYTCMVDML----GRAGLLDEAVEFIEK 444
              +  G V E +        ++G V   G   Y  +V+ L     ++G +D A +  ++
Sbjct: 561 KCFATLGRVGECK-------RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE 613

Query: 445 MPIVPGASVWGALLGAC 461
           +      S W +++  C
Sbjct: 614 LGDRDVVS-WNSMISGC 629


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 325/568 (57%), Gaps = 64/568 (11%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A+ +FD++ + ++ +W  +I     S    +    F +++     FPNE T   +I 
Sbjct: 242 LASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRML-EEKLFPNEITLLSLIT 300

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
               +    +G+  H  ++++ F   L +  +LI  Y  CG +  A  +F  + KKDV  
Sbjct: 301 ECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKI 360

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W+ +IS +      ++   L+ EM                                    
Sbjct: 361 WSVLISAYAHVSCMDQVFNLFVEM------------------------------------ 384

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                 L+ +V P+  T VS+LS CA+ GA+D+G   HA + + G++++  L T+LI+MY
Sbjct: 385 ------LNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMY 438

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++  A  +F+    RD+ +W+TM+AGF+M+GCG+EAL+LFS M+   V+PN +TF 
Sbjct: 439 AKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFV 498

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++  ACSHSGL++                    HY C+VD+LGRAG LDEA   IE MP+
Sbjct: 499 SIFHACSHSGLME--------------------HYGCLVDLLGRAGHLDEAHNIIENMPM 538

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +WGALL ACK+H+N+ L E A   +LEL+P+N G  VL SNIYA   +W++V+ +
Sbjct: 539 RPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSV 598

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ M  SG+KKEPG S IEV+G +H F +G+ +     ++Y  + E+  +L+  GY PN 
Sbjct: 599 REAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNT 658

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           + +L  ++EE+ +E AL+ HSE+LA A+GLIS  P  PIRIVKNLR+C DCH   KL+SK
Sbjct: 659 AAVLLNIDEEE-KESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSK 717

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +Y R I++RDR RFHHF  G CSCM YW
Sbjct: 718 IYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 219/506 (43%), Gaps = 111/506 (21%)

Query: 50  NIKQLKQIHTQMLRTGLFF-DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           N++Q  Q+H   ++T      P+ +   FTP A                        +N 
Sbjct: 21  NLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEA-----------------------NYNL 57

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           LI +Y+++  P  SF  +L +  N     + F  P ++KA A+     +G+ +HG   K+
Sbjct: 58  LISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKN 117

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            F  D+F+ N+L++ Y  CG L  A  VF  + ++DVVSW +M+  +V+   F +A+ L 
Sbjct: 118 GFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLV 177

Query: 229 REME----------------------------------MENVKPD--EVTMVAVL----- 247
           REM+                                  + NV  +  EV+M   L     
Sbjct: 178 REMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYC 237

Query: 248 -SACAKKRDLEFGR--------WPNEALSIFHELQL---SKNVN--------PDEFTFVS 287
              C       F R        W           +L   +KN N        P+E T +S
Sbjct: 238 KGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLS 297

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +++ C  +G +D+G   HA + + G  ++  L T+LIDMY KCG +  A  +F+ VK +D
Sbjct: 298 LITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKD 357

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR---M 404
           V +WS +I+ +A   C  +  +LF  M    VKPN VT  ++L  C+ +G +D G+    
Sbjct: 358 VKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHA 417

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAG-------LLDEAVEFIEKMPIVPGASVWGAL 457
           + N+    +G+   V   T +++M  + G       L +EA++   +M        W  +
Sbjct: 418 YINR----HGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRM--------WNTM 465

Query: 458 LGACKIH----ENVELAEYACSHLLE 479
           +    +H    E +EL     SH +E
Sbjct: 466 MAGFSMHGCGKEALELFSEMESHGVE 491


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 370/665 (55%), Gaps = 64/665 (9%)

Query: 5   PPQHMETLS---TPVISLPRHPNPTTLTVNNG------HQHHPHPVFSLIKQCKNIKQLK 55
           P Q++ T S    P+I         T+T  N        + + H    L+ Q ++   LK
Sbjct: 13  PLQNILTKSQHQNPIIKTQSLSQEGTITPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLK 72

Query: 56  --QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
             QIH  ++++GL   P     L   ++   L   SS     ++F++  + +  TW+++I
Sbjct: 73  GQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSS-----QVFEESERKSSTTWSSVI 127

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            +++ + EP+ +   F +++      P++  FP   KA A L +  VG+++H +VIK+ +
Sbjct: 128 SSFAQNEEPVLAIQYFCRMI-GENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGY 186

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + D+F+ +SL+  YA CGD+  A  VF  +  ++VVSW+ MI G+ Q G  E+A+ L++E
Sbjct: 187 DVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKE 246

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
             +E                                           ++ ++FT  SV+ 
Sbjct: 247 ALLEG------------------------------------------LDVNDFTLSSVIR 264

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
            C     +++G QIH    K    L+ ++ +SLI +Y+KCG ++ A  VF  V  +++ +
Sbjct: 265 VCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGM 324

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+   A +   +EA DLF++M+ A ++PN +TF  VL ACSH+GLV+EG+ +F  M+
Sbjct: 325 WNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMK 384

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             Y + PG +HY  MVD+LGRAG L EA+  I+ MP  P  SVWGA +  C+IH N +LA
Sbjct: 385 K-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLA 443

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
            +A   + EL   + G  V+LSN YA  G++++ ++ RK +R  G+KKE G S IE    
Sbjct: 444 AFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNR 503

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +HKF AG+  H   KEIY KL+++   ++  GYV + S +L+ V  E+ + Q +  HSER
Sbjct: 504 VHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEE-KNQTIRYHSER 562

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+GLIS+   +PIRI+KNLRVCGDCH   K ISKL  R I++RD  RFH F  G CS
Sbjct: 563 LAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCS 622

Query: 651 CMDYW 655
           C DYW
Sbjct: 623 CADYW 627


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/628 (35%), Positives = 344/628 (54%), Gaps = 58/628 (9%)

Query: 38  PHPVFSL-------IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY 90
           P  V+S+       I  C ++     IH +++++  + D +   +L +      +  L Y
Sbjct: 58  PFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVS-----MYFKLGY 112

Query: 91  ---AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
              A+ +FD++P  +L +WN+L+   S           F ++   S   PNE T   V+ 
Sbjct: 113 DEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVS 172

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A +     G+++HG+V+K        + NSLI+ Y   G L  A  +F  +  + +VS
Sbjct: 173 ACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVS 232

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WNSM+      G+ EK ++L+  M+                                   
Sbjct: 233 WNSMVVIHNHNGYAEKGMDLFNLMK----------------------------------- 257

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                     +NPD+ T V++L AC   G       IHA + + G   +  + T+L+++Y
Sbjct: 258 -------RAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLY 310

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            K G L+ + ++F  +K RD   W+ M+AG+A++ CGREA+ LF  M +  V+ + VTFT
Sbjct: 311 AKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFT 370

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++L ACSHSGLV+EG+ +F  M  VY V P + HY+CMVD+LGR+G L++A E I+ MP+
Sbjct: 371 HLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPM 430

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P + VWGALLGAC+++ NVEL +     LL L+P +H   ++LSNIY+  G W + S++
Sbjct: 431 EPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKV 490

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M+   L + PGCS IE   +IH+F+ G+  HP   EI++KL+E++ +++  G  P  
Sbjct: 491 RALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKT 550

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++EE V+   +N HSE+LAIA+GL+      P+ I KNLR+CGDCH+ AK  S 
Sbjct: 551 EFVLHDIDEE-VKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASL 609

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L  R I++RD  RFHHF  G CSC DYW
Sbjct: 610 LEKRTIIIRDSKRFHHFADGLCSCRDYW 637


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 351/624 (56%), Gaps = 41/624 (6%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTG-LFFDPYSASKLFTP-CALGTFSSLEYAREMFDQ 97
           S++  C ++  L   K+IH   LRT  +  + +  S L    C  G    +E  R +FD 
Sbjct: 221 SVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCG---QVESGRLVFDS 277

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +    +  WN +I  Y+ S    ++ M+F+++   +  + N  T   ++ A  R      
Sbjct: 278 VLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR 337

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            + IHG VIK   E + ++ N+LI  Y+  GD+  +  +F  +  +D+VSWN++I+ +V 
Sbjct: 338 KEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVI 397

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G    A+ L  EM+                   +++    G + +E    F        
Sbjct: 398 CGRSSDALLLLHEMQR-----------------IEEKSTYDGDYNDEKQVPF-------- 432

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P+  T ++VL  CA L A+  G +IHA   +  +     + ++L+DMY KCG L+ A 
Sbjct: 433 -KPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLAR 491

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-----QEAKVKPNAVTFTNVLCA 392
            VF  +  R+V  W+ +I  + M+G G+E+L+LF  M     +  +VKP  VTF  +  +
Sbjct: 492 RVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFAS 551

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI-VPGA 451
           CSHSG+VDEG   F++M+  +G+ P   HY C+VD++GRAG ++EA   +  MP      
Sbjct: 552 CSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKV 611

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
             W +LLGAC+I+ N+E+ E A  +LL+L+P+     VLLSNIY+  G WD    LR+ M
Sbjct: 612 GAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRM 671

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           +  G+KKEPGCS IE   E+HKFLAG+ SHP  ++++  L+ +  RLK  GYVP+ + +L
Sbjct: 672 KAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVL 731

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             ++EE+ +E  L  HSE+LAIA+G+++  P   IR+ KNLRVC DCHT +K ISK+ +R
Sbjct: 732 HDIDEEE-KETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDR 790

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHF+ G CSC DYW
Sbjct: 791 EIILRDARRFHHFKDGTCSCGDYW 814



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 192/446 (43%), Gaps = 75/446 (16%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE--DDLFISNSLIHFYAICGD 189
            S + P+ F FP V+KA A + +  +G+ IH  V K  +     + I N+L++ Y  CG 
Sbjct: 3   GSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGG 62

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  AY VF  I ++D VSWNS+IS   +   +E AI+ +R M ME  +P   T+V++  A
Sbjct: 63  LGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALA 122

Query: 250 CA--KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
           C+  +KRD   G W                                      +G QIH  
Sbjct: 123 CSNLRKRD---GLW--------------------------------------LGKQIHGC 141

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
             ++G     +   +L+ MY K G LD A  +    + RD+  W++MI+ F+      EA
Sbjct: 142 CFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEA 200

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L     M    VKP+ VTF +VL ACSH  L+  G+           V+      + +VD
Sbjct: 201 LMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVD 260

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           M    G + E+   +    +     +W A+           +A YA S        +  A
Sbjct: 261 MYCNCGQV-ESGRLVFDSVLDRKIGLWNAM-----------IAGYAQSE------HDEKA 302

Query: 488 LVLLSNIYAKTGKWDNVSELRK----HMRVSGLKKEPGCSS--IEVNGEIHKFLAGESSH 541
           L+L   + A  G + N + +      ++R  G+ ++ G     I+   E +++L      
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYL-----Q 357

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNR 567
               ++YS++ +I    + F  + +R
Sbjct: 358 NALIDMYSRMGDIKTSKRIFDSMEDR 383



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 165/363 (45%), Gaps = 62/363 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCA--LGTFSSLEYAREMFDQ 97
           +++K    I++L   KQIH  + + G  +  +S+  +        G    L  A ++FD+
Sbjct: 15  AVLKAVAGIQELYLGKQIHAHVFKFG--YGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDR 72

Query: 98  IPQPNLYTWNTLIRAYSSSAE---PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           I + +  +WN++I A     E    I++F + L       + P+ FT   +  A + L +
Sbjct: 73  ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLM----EGFEPSSFTLVSMALACSNLRK 128

Query: 155 ---FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                +G+ IHG   +       F +N+L+  YA  G L  A  + V+   +D+V+WNSM
Sbjct: 129 RDGLWLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSM 187

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           IS F Q   F +A+   R M +E VKPD VT  +VL A                      
Sbjct: 188 ISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPA---------------------- 225

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKC 330
                               C+ L  +  G +IHA  ++   +  N ++ ++L+DMY  C
Sbjct: 226 --------------------CSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNC 265

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNV 389
           G ++    VF +V  R + +W+ MIAG+A      +AL LF  M+ A  +  NA T +++
Sbjct: 266 GQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSI 325

Query: 390 LCA 392
           + A
Sbjct: 326 VPA 328



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT--TSLIDMYTKCG 331
           +    +PD F F +VL A A +  + +G QIHA + K G      +T   +L++MY KCG
Sbjct: 2   IGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCG 61

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            L  A +VF  +  RD   W+++I+    +     A+  F  M     +P++ T  ++  
Sbjct: 62  GLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMAL 121

Query: 392 ACSH 395
           ACS+
Sbjct: 122 ACSN 125


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 337/614 (54%), Gaps = 51/614 (8%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY---AREMFDQIPQP 101
           I  C ++     IH +++++  + D +   +L +      +  L Y   A+ +FD++P  
Sbjct: 149 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVS-----MYFKLGYDEDAQRLFDEMPNR 203

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L +WN+L+   S           F ++   S   PNE T   V+ A A +     G+++
Sbjct: 204 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           HG+V+K        + NSLI+ Y   G L  A  +F  +  + +VSWNSM+      G+ 
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           EK ++L+  M+                                             +NPD
Sbjct: 324 EKGMDLFNLMK------------------------------------------RAGINPD 341

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           + T V++L AC   G       IHA + + G   +  + T+L+++Y K G L+ + ++F 
Sbjct: 342 QATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 401

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +K RD   W+ M+AG+A++ CGREA+ LF  M +  V+ + VTFT++L ACSHSGLV+E
Sbjct: 402 EIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 461

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+ +F  M  VY V P + HY+CMVD+LGR+G L++A E I+ MP+ P + VWGALLGAC
Sbjct: 462 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC 521

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           +++ NVEL +     LL L+P +H   ++LSNIY+  G W   S++R  M+   L + PG
Sbjct: 522 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPG 581

Query: 522 CSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE 581
           CS IE   +IH+F+ G+  HP   EI++KL+E++ ++   G  P    +L  ++EE V+ 
Sbjct: 582 CSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEE-VKV 640

Query: 582 QALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
             +N HSE+LAIA+GL+      P+ I KNLR+CGDCH+ AK  S L  R I++RD  RF
Sbjct: 641 DMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRF 700

Query: 642 HHFRGGNCSCMDYW 655
           HHF  G CSC DYW
Sbjct: 701 HHFADGLCSCRDYW 714


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 342/620 (55%), Gaps = 49/620 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFD-PYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           VFS   + +N+   KQ+H+  +R+GL  D   S   ++  C+     S++  R++FD++ 
Sbjct: 275 VFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD--GSVDDCRKVFDRME 332

Query: 100 QPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
             ++ +W  LI  Y  +     ++  +F +++      PN FTF    KA   L   RVG
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVG 392

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + + G   K     +  ++NS+I  +     +  A   F  + +K++VS+N+ + G  + 
Sbjct: 393 KQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRN 452

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
             FE+A +L  E+                                            + +
Sbjct: 453 LNFEQAFKLLSEIT------------------------------------------EREL 470

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
               FTF S+LS  A +G++  G QIH+++ K G+  N  +  +LI MY+KCG++D A  
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF+ +++R+V  W++MI GFA +G     L+ F++M E  VKPN VT+  +L ACSH GL
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG   FN M   + + P ++HY CMVD+L RAGLL +A EFI  MP      VW   L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC++H N EL + A   +LEL+P    A + LSNIYA  GKW+  +E+R+ M+   L K
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVK 710

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS---HLLQLVE 575
           E GCS IEV  +IHKF  G+++HP   +IY +LD ++  +K  GYVP+     H L+   
Sbjct: 711 EGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEEN 770

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E  +E+ L  HSE++A+A+GLIS   S+P+R+ KNLRVCGDCH   K IS +  REI+L
Sbjct: 771 DEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVL 830

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC DYW
Sbjct: 831 RDLNRFHHFKDGKCSCNDYW 850



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 50/374 (13%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           +S E A ++FD++ + N+ TW  +I        P ++   FL +V  S +  ++FT   V
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVL-SGFESDKFTLSSV 275

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYC--VFVMIGK 202
             A A L    +G+ +H   I+S   DD  +  SL+  YA C  D ++  C  VF  +  
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
             V+SW ++I+G+                 M+N                           
Sbjct: 334 HSVMSWTALITGY-----------------MKNCN-----------------------LA 353

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            EA+++F E+    +V P+ FTF S   AC  L    +G Q+  +  K+G+  N  +  S
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           +I M+ K   ++ A   F ++  +++  ++T + G        +A  L S + E ++  +
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---V 439
           A TF ++L   ++ G + +G    +Q+  + G+         ++ M  + G +D A    
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKL-GLSCNQPVCNALISMYSKCGSIDTASRVF 532

Query: 440 EFIEKMPIVPGASV 453
            F+E   ++   S+
Sbjct: 533 NFMENRNVISWTSM 546



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 30  VNNGHQHHPHPVFS-LIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF 85
           +  GH    H  FS   K C N+   +  KQ+  Q  + GL  +   A+ + +       
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVIS--MFVKS 421

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             +E A+  F+ + + NL ++NT +     +    Q+F + L  +       + FTF  +
Sbjct: 422 DRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL-LSEITERELGVSAFTFASL 480

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +   A +   R G+ IH  V+K     +  + N+LI  Y+ CG +  A  VF  +  ++V
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +SW SMI+GF + GF  + +E + +M  E VKP+EVT VA+LSAC+
Sbjct: 541 ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 123/548 (22%), Positives = 228/548 (41%), Gaps = 97/548 (17%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-----CALGTFSSLEYAREM 94
           SL+K C   ++ +  K +H +++     FD    S L+          G  +  E   E 
Sbjct: 67  SLLKSCIRARDFRLGKLVHARLIE----FDIEPDSVLYNSLISLYSKSGDSAKAEDVFET 122

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
             +  + ++ +W+ ++  Y ++   + +  +F++ +      PN++ +  VI+A +    
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFL-ELGLVPNDYCYTAVIRACSNSDF 181

Query: 155 FRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAM--AYCVFVMIGKKDVVSWNSM 211
             VG+   G ++K+  FE D+ +  SLI  + + G+ +   AY VF  + + +VV+W  M
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMF-VKGENSFENAYKVFDKMSELNVVTWTLM 240

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+  +Q GF  +AI  + +M +   + D+ T+ +V SACA+  +L  G+           
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGK----------- 289

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC- 330
                                          Q+H+   + G+  +  +  SL+DMY KC 
Sbjct: 290 -------------------------------QLHSWAIRSGLVDD--VECSLVDMYAKCS 316

Query: 331 --GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC--GREALDLFSRM-QEAKVKPNAVT 385
             G++D   +VF  ++   V  W+ +I G+ M  C    EA++LFS M  +  V+PN  T
Sbjct: 317 ADGSVDDCRKVFDRMEDHSVMSWTALITGY-MKNCNLATEAINLFSEMITQGHVEPNHFT 375

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F++   AC +      G+    Q     G+         ++ M  ++  +++A    E +
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGKWDN 503
                 S    L G C+ + N E A    S + E E          LLS +        N
Sbjct: 435 SEKNLVSYNTFLDGTCR-NLNFEQAFKLLSEITERELGVSAFTFASLLSGVA-------N 486

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCK---EIYSKLDEIVARLKS 560
           V  +RK  ++     + G S                + P+C     +YSK   I    + 
Sbjct: 487 VGSIRKGEQIHSQVVKLGLS---------------CNQPVCNALISMYSKCGSIDTASRV 531

Query: 561 FGYVPNRS 568
           F ++ NR+
Sbjct: 532 FNFMENRN 539



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 153/356 (42%), Gaps = 56/356 (15%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           +  TF  ++K+  R   FR+G+ +H  +I+   E D  + NSLI  Y+  GD A A  VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 198 VMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
             +   GK+DVVSW++M++ +   G    AI+++ E                        
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF----------------------- 157

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG-VQIHAKMKKQGI 313
            LE G  PN                  ++ + +V+ AC+    + +G V +   MK    
Sbjct: 158 -LELGLVPN------------------DYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHF 198

Query: 314 KLNCYLTTSLIDMYTKCGN-LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           + +  +  SLIDM+ K  N  + A +VF  +   +V  W+ MI      G  REA+  F 
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFL 258

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
            M  +  + +  T ++V  AC+    +  G+   +      G+V  V+    +VDM  + 
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQ-LHSWAIRSGLVDDVE--CSLVDMYAKC 315

Query: 433 ---GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
              G +D+  +  ++M      S W AL+      +N  LA  A +   E+  + H
Sbjct: 316 SADGSVDDCRKVFDRMEDHSVMS-WTALITG--YMKNCNLATEAINLFSEMITQGH 368



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 156/359 (43%), Gaps = 35/359 (9%)

Query: 271 ELQLSKNVNP-DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           +L     + P D  TF S+L +C +     +G  +HA++ +  I+ +  L  SLI +Y+K
Sbjct: 50  DLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSK 109

Query: 330 CGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
            G+  KA +VF T++    RDV  WS M+A +   G   +A+ +F    E  + PN   +
Sbjct: 110 SGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCY 169

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA-GLLDEAVEFIEKM 445
           T V+ ACS+S  V  GR+    +         V     ++DM  +     + A +  +KM
Sbjct: 170 TAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM 229

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN-HGALVLLSNIYAKTGKWDNV 504
             +     W  ++  C     +     A    L++           LS++++   + +N+
Sbjct: 230 SEL-NVVTWTLMITRCM---QMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENL 285

Query: 505 S---ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKL-DEIVARLKS 560
           S   +L      SGL  +  CS +++  +     + + S   C++++ ++ D  V    +
Sbjct: 286 SLGKQLHSWAIRSGLVDDVECSLVDMYAKC----SADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 561 F--GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
              GY+ N           ++  +A+NL SE +   +    VEP+         + CG+
Sbjct: 342 LITGYMKNC----------NLATEAINLFSEMITQGH----VEPNH-FTFSSAFKACGN 385


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/659 (34%), Positives = 371/659 (56%), Gaps = 63/659 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGL----------FFDPY--SASKLFTPCALGTFSSLEY 90
           +L+    N +Q  Q+H  +++TG+              Y   AS+L   C     S++  
Sbjct: 156 ALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISC-----SAMVS 210

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN---------SPYFP---- 137
           AR++FD++P+ +  TW T+I  Y  + +   +  +F  +V N         S Y      
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270

Query: 138 -----------------NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD----LFI 176
                            ++ T+  +I A A +  F++G+ +H  ++K+    +    L +
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSV 330

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           SN+LI  Y     +  A  +F  +  +++++WN+++SG+V  G  E+A   + EM ++N+
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
               +T+  ++S  A+     FG   +E L +F +++L     P +F F   L+AC+ LG
Sbjct: 391 ----LTLTVMISGLAQN---GFG---DEGLKLFKQMRLD-GFEPCDFAFAGALTACSVLG 439

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           A++ G Q+HA++   G + +  +  ++I MY KCG ++ A  VF T+ S D+  W++MIA
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
               +G G +A++LF +M +  V P+ +TF  VL ACSH+GLV++GR +FN M   YG+ 
Sbjct: 500 ALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGIT 559

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P   HY  MVD+  RAG+   A   I+ MP  PGA VW ALL  C+IH N++L   A   
Sbjct: 560 PCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQ 619

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           L +L P+N G  VLLSNIYA  G+W+ V+++RK MR   ++KEP CS IEV  ++H F+ 
Sbjct: 620 LFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMV 679

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
            +  HP    +Y  L+++   +K  GY+P+   +L  +E E  +E AL+ HSE+LA+ +G
Sbjct: 680 DDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQ-KEHALSTHSEKLAVGFG 738

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++ + P   +R+ KN+R+CGDCH   K +SK+  REI++RDR RFHHF+ G+CSC DYW
Sbjct: 739 IMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 194/457 (42%), Gaps = 92/457 (20%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSS-----------SAEPI-------------- 120
           S+L YAR++F++IP P+     TLI AY +           +  P+              
Sbjct: 62  SNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITG 121

Query: 121 -------QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV--QFRVGQAIHGMVIKSSFE 171
                   S +   + +    + P++FTF  V+ A    V  + + GQ +H  V+K+   
Sbjct: 122 YAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ-MHCAVVKTGMG 180

Query: 172 -DDLFISNSLIHFYA--------ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
                + N+L+  Y          C  +  A  +F  + K+D ++W +MI+G+V+     
Sbjct: 181 CVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN 240

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A E++  M +EN+      M++    C   +         EAL++  +++    +  D+
Sbjct: 241 GAREVFEAM-VENLGAAWNAMISGYVHCGCFQ---------EALTLCRKMRF-LGIQFDD 289

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN----CYLTTSLIDMYTKCGNLDKALE 338
            T+ +++SACA +G+  +G Q+HA + K  +  N      ++ +LI +Y K   +D+A +
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 339 VFHTVKSRDVFVW-------------------------------STMIAGFAMYGCGREA 367
           +F+ +  R++  W                               + MI+G A  G G E 
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEG 409

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L LF +M+    +P    F   L ACS  G ++ GR    Q+  + G    +     M+ 
Sbjct: 410 LKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMIS 468

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           M  + G+++ A      MP V   S W +++ A   H
Sbjct: 469 MYAKCGVVEAAESVFVTMPSVDLVS-WNSMIAALGQH 504



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 161/357 (45%), Gaps = 24/357 (6%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           D     +LI  Y   G+L +   +F    +  +D V +N+MI+G+   G    A+EL+R 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M  ++ +PD+ T  +VLSA      L  G    +     H   +   +     + ++ L 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALV----LFVGN--EQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 291 ACAQLGAMDIGVQIHAKMKKQGI-----KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           +     A ++G+   A +  + +     K +    T++I  Y +  +L+ A EVF  +  
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR-- 403
                W+ MI+G+   GC +EAL L  +M+   ++ + +T+T ++ AC++ G    G+  
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311

Query: 404 ---MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
              +  N++ P +     V +   ++ +  +   +DEA +    MP V     W A+L  
Sbjct: 312 HAYILKNELNPNHSFCLSVSN--ALITLYCKNNKVDEARKIFYAMP-VRNIITWNAILSG 368

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
              + N    E A S   E+  +N   L ++ +  A+ G  D   +L K MR+ G +
Sbjct: 369 ---YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 331/616 (53%), Gaps = 49/616 (7%)

Query: 43   SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
            S++K C  +  L+   QIH+Q+++T    + Y  S L    A      L+ A ++  +  
Sbjct: 478  SILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYA--KLGKLDTAWDILIRFA 535

Query: 100  QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
              ++ +W T+I  Y+      ++   F Q++ +     +E      + A A L   + GQ
Sbjct: 536  GKDVVSWTTMIAGYTQYNFDDKALTTFRQML-DRGIRSDEVGLTNAVSACAGLQALKEGQ 594

Query: 160  AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
             IH     S F  DL   N+L+  Y+ CG++  AY  F      D ++WN+++SGF Q G
Sbjct: 595  QIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSG 654

Query: 220  FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              E+A+ ++  M  E                                           ++
Sbjct: 655  NNEEALRVFARMNREG------------------------------------------ID 672

Query: 280  PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
             + FTF S + A ++   M  G Q+HA + K G      +  ++I MY KCG++  A + 
Sbjct: 673  SNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQ 732

Query: 340  FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
            F  +  ++   W+ MI  ++ +G G EALD F +M  + V+PN VT   VL ACSH GLV
Sbjct: 733  FLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 792

Query: 400  DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            D+G  +F  M   YG+ P  +HY C+VDML RAGLL  A +FI +MPI P A VW  LL 
Sbjct: 793  DKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLS 852

Query: 460  ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
            AC +H+N+E+ E+A  HLLELEPE+    VLLSN+YA   KWD     R+ M+  G+KKE
Sbjct: 853  ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKE 912

Query: 520  PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
            PG S IEV   IH F  G+ +HPL  EI+    ++  R    GYV +   LL  +++E  
Sbjct: 913  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQ- 971

Query: 580  QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            ++  + +HSE+LAI++GL+S+  + PI ++KNLRVC DCH   K +SK+ NREI++RD Y
Sbjct: 972  KDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAY 1031

Query: 640  RFHHFRGGNCSCMDYW 655
            RFHHF GG CSC DYW
Sbjct: 1032 RFHHFEGGACSCKDYW 1047



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 224/478 (46%), Gaps = 68/478 (14%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++QIH +++  GL       + L    +   F  ++ AR +FD +   +  +W  +I   
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGF--VDRARRVFDGLYLKDHSSWVAMISGL 246

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S +   +++  +F  + Y     P  + F  V+ A  ++    +G+ +HG+V+K  F  D
Sbjct: 247 SKNECEVEAIRLFCDM-YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 305

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            ++ N+L+  Y   G L  A  +F  + ++D V++N++I+G  Q G+ EKA+EL++ M++
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL 365

Query: 234 ENVKPDEVTMV-----------------------------------AVLSACAKKRDLE- 257
           + ++PD  T+                                    A+L+  AK  D+E 
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIET 425

Query: 258 ----------------------FGRWPN--EALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                 +G   +   +  IF ++Q+ + V P+++T+ S+L  C 
Sbjct: 426 ALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV-PNQYTYPSILKTCI 484

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           +LG +++G QIH+++ K   +LN Y+ + LIDMY K G LD A ++      +DV  W+T
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 544

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+  Y    +AL  F +M +  ++ + V  TN + AC+    + EG+    Q   V 
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQA-CVS 603

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGALLGACKIHENVELA 470
           G    +     +V +  + G ++EA    E+     G ++ W AL+   +   N E A
Sbjct: 604 GFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTE--AGDNIAWNALVSGFQQSGNNEEA 659



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 219/509 (43%), Gaps = 80/509 (15%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           HQ     +   +K   ++ + +++H+Q+L+ G   +   + KL           L+ A +
Sbjct: 67  HQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFK--GDLDGALK 124

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA-ARL 152
           +FD++P+  ++TWN +I+  +S +   + F +F ++V N    PNE TF  V++A     
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMV-NENVTPNEGTFSGVLEACRGGS 183

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
           V F V + IH  +I         + N LI  Y+  G +  A  VF  +  KD  SW +MI
Sbjct: 184 VAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMI 243

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           SG  +     +AI L+ +M +  + P      +VLSAC K   LE               
Sbjct: 244 SGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE--------------- 288

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                                      IG Q+H  + K G   + Y+  +L+ +Y   G+
Sbjct: 289 ---------------------------IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           L  A  +F  +  RD   ++T+I G +  G G +A++LF RMQ   ++P++ T  +++ A
Sbjct: 322 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVA 381

Query: 393 CSHSGLVDEG--------RMFFNQMEPVYGVV-------------------PGVKHYTCM 425
           CS  G +  G        ++ F   + + G +                     V++    
Sbjct: 382 CSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLW 441

Query: 426 VDMLGRAGLLDE---AVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
             ML   GLLD+   +     +M    IVP    + ++L  C    ++EL E   S +++
Sbjct: 442 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 501

Query: 480 LEPE-NHGALVLLSNIYAKTGKWDNVSEL 507
              + N     +L ++YAK GK D   ++
Sbjct: 502 TSFQLNAYVCSVLIDMYAKLGKLDTAWDI 530



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 161/406 (39%), Gaps = 82/406 (20%)

Query: 130 VYNSPYFPNEFTFPFVIKAAARLV-QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           V N    PN  T  ++++   +       G+ +H  ++K  F+++  +S  L+ FY   G
Sbjct: 58  VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           DL  A  VF  + ++ + +WN MI          K   L+  M  ENV P+E T   VL 
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           AC                                    SV        A D+  QIHA++
Sbjct: 178 ACRGG---------------------------------SV--------AFDVVEQIHARI 196

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
             QG+  +  +   LID+Y++ G +D+A  VF  +  +D   W  MI+G +   C  EA+
Sbjct: 197 IYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAI 256

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF---------------NQMEPVY 413
            LF  M    + P    F++VL AC     ++ G                   N +  +Y
Sbjct: 257 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY 316

Query: 414 ---GVVPGVKH------------YTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWG 455
              G +   +H            Y  +++ L + G  ++A+E  ++M    + P ++   
Sbjct: 317 FHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLA 376

Query: 456 ALLGACK----IHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           +L+ AC     +    +L  Y          +  GAL+   N+YAK
Sbjct: 377 SLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALL---NLYAK 419


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 329/568 (57%), Gaps = 14/568 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A+E+FD++P  N  +W  +I  Y+ +    ++ +  LQ ++ +   P+  +      
Sbjct: 368 VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEA-LDLLQALHRNGMLPSLSSLTSSFL 426

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A + +     G+ +H + +K+  + + ++ N+LI  Y  C ++     VF  +  KD VS
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WNS I+  VQ    E A  ++  M    +  D V+   ++SA A+    E G   +EA+ 
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQA---ERG---DEAVE 536

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
            F  + L ++  P+      +LS C  LG+  +G QIH    K G+     +  +L+ MY
Sbjct: 537 FFKTM-LHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMY 595

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG  D + +VF +++ RD+F W+T I G A +G GREA+ ++  M+   V PN VTF 
Sbjct: 596 FKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFV 654

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSH+GLVDEG  FF  M   YG+ P ++HY CMVD+LGR G +  A +FI  MPI
Sbjct: 655 GLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPI 714

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W ALLGACKIH+N E+   A   L   EP N G  V+LSNIY+  G W  V+EL
Sbjct: 715 EPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAEL 774

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           RK M+  G+ KEPGCS +++  ++H F+ G+  H   +EI   L ++   L+  GYVP+ 
Sbjct: 775 RKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDT 834

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++EE  +E +L  HSE+LA+AYGL+      PI+I+KNLR+CGDCHT  K +S 
Sbjct: 835 EFVLHDIDEEQ-KESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSH 893

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R+I +RD  RFHHFR G+CSC D+W
Sbjct: 894 VTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 173/381 (45%), Gaps = 34/381 (8%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           L     L  ARE+FD +P  ++  WN++I AY +S       +   ++++++    N  T
Sbjct: 43  LARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSG-----MLEDARILFDAISGGNVRT 97

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++   ARL   RV  A    V     E +    N+++  Y   GD+ MA  +F  + 
Sbjct: 98  ATILLSGYARL--GRVLDARR--VFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMP 153

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +DV SWNSM++G+        A  L+++M   N+    VT   ++S   +         
Sbjct: 154 SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQ------ 203

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQGIKLNCYL 319
             +   IF  +   +  +PD+  F SVLSA    G  D+GV   +   + K G + +  +
Sbjct: 204 HGKGWDIFRMMH-HEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVI 260

Query: 320 TTSLIDMYTK-CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
            TS++++YT+    LD A++ F  +  R+ + WSTMIA  +  G    A+ ++ R    K
Sbjct: 261 GTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR-DPVK 319

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
             P+       L  C   G + E R+ F Q+       P V  +  M+    + G++DEA
Sbjct: 320 SIPSQTALLTGLARC---GRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEA 371

Query: 439 VEFIEKMPIVPGASVWGALLG 459
            E  ++MP     S  G + G
Sbjct: 372 KELFDRMPFRNTISWAGMIAG 392



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 27  TLTVNNGHQHHPH---PVFSLIKQCKNIKQLKQIHTQM-LRTGLFFDPYSASKLFTPCAL 82
           +L V  G Q + +    + S+  +C+N++ ++Q+  +M ++  + ++ + A       AL
Sbjct: 442 SLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIA-------AL 494

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
              + LE AR +FD +   ++ +W T+I AY+ +    ++   F  +++     PN    
Sbjct: 495 VQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK-PNSPIL 553

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
             ++     L   ++GQ IH + IK   + +L ++N+L+  Y  CG  A ++ VF  + +
Sbjct: 554 TILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEE 612

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +D+ +WN+ I+G  Q G   +AI++Y  ME   V P+EVT V +L+AC+
Sbjct: 613 RDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACS 661



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 28/280 (10%)

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
           A  G L  A  VF  +  +D+++WNSMIS +   G  E A  L+  +   NV+    T  
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TAT 99

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
            +LS  A+      GR   +A  +F  +     V      + +++S   Q G + +  ++
Sbjct: 100 ILLSGYAR-----LGR-VLDARRVFDGMPERNTV-----AWNAMVSCYVQNGDITMARRL 148

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
              M  + +        S++  Y     +  A  +F  +  R++  W+ MI+G+      
Sbjct: 149 FDAMPSRDVT----SWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQH 204

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPGVKH 421
            +  D+F  M      P+   F +VL A   +GL D G      + P+    G    V  
Sbjct: 205 GKGWDIFRMMHHEGASPDQSNFASVLSAV--TGLQDLG--VLEVLRPLVLKTGFESDVVI 260

Query: 422 YTCMVDMLGR-AGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            T ++++  R A  LD A++F + M +      W  ++ A
Sbjct: 261 GTSILNVYTRDASALDIAIKFFDGM-VERNEYTWSTMIAA 299



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           + G L +A EVF  +  RD+  W++MI+ +   G   +A  LF  +    V+    T T 
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TATI 100

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           +L   +  G V + R  F+ M P    V     +  MV    + G +  A    + MP  
Sbjct: 101 LLSGYARLGRVLDARRVFDGM-PERNTVA----WNAMVSCYVQNGDITMARRLFDAMPSR 155

Query: 449 PGASVWGALLGACKIHENVE 468
              S    + G C   + V+
Sbjct: 156 DVTSWNSMVTGYCHSRQMVD 175


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/658 (36%), Positives = 356/658 (54%), Gaps = 76/658 (11%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF------FDPYSASKLFT-PCAL 82
           V +GH      VF  +   KN      +    +R+G        F+  S  +L +  C +
Sbjct: 137 VRSGHVDEARDVFDRMPH-KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLM 195

Query: 83  GTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE-----------PIQSFMIFLQ 128
           G +   + L  AR++FDQIP  +L +WNT+I  Y+   +           P++    +  
Sbjct: 196 GGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTA 255

Query: 129 LVYN--SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS--------- 177
           +VY        +E    F      R + + V  A +    +     +LF           
Sbjct: 256 MVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSW 315

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           N +I  Y   GDLA A  +F M+ ++D VSW ++I+G+ Q G +E+A+ +  EM      
Sbjct: 316 NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM------ 369

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                          KRD E                     + +  TF   LSACA + A
Sbjct: 370 ---------------KRDGE---------------------SLNRSTFCCALSACADIAA 393

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +++G Q+H ++ + G +  C +  +L+ MY KCG +D+A +VF  V+ +D+  W+TM+AG
Sbjct: 394 LELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAG 453

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +A +G GR+AL +F  M  A VKP+ +T   VL ACSH+GL D G  +F+ M   YG+ P
Sbjct: 454 YARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITP 513

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
             KHY CM+D+LGRAG L+EA   I  MP  P A+ WGALLGA +IH N+EL E A   +
Sbjct: 514 NSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMV 573

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
            ++EP N G  VLLSN+YA +G+W +VS++R  MR  G++K PG S +EV  +IH F  G
Sbjct: 574 FKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVG 633

Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597
           +  HP    IY+ L+E+  ++K  GYV +   +L  VEEE+ ++  L  HSE+LA+A+G+
Sbjct: 634 DCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEE-KKHMLKYHSEKLAVAFGI 692

Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +++   +PIR++KNLRVC DCH   K ISK+  R I++RD +R+HHF  G CSC DYW
Sbjct: 693 LTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 174/416 (41%), Gaps = 73/416 (17%)

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           V+++    N  ++  +I    R  +F + + +           DLF  N ++  YA    
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDL----FDKMPHKDLFSWNLMLTGYARNRR 110

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L  A  +F  + +KDVVSWN+M+SG+V+ G  ++A +++  M  +N     ++   +L+A
Sbjct: 111 LRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN----SISWNGLLAA 166

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
             +   LE      EA  +F                                    +K  
Sbjct: 167 YVRSGRLE------EARRLF-----------------------------------ESKSD 185

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            + I  NC     L+  Y K   L  A ++F  +  RD+  W+TMI+G+A  G   +A  
Sbjct: 186 WELISCNC-----LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARR 240

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF   +E+ V+ +  T+T ++ A    G++DE R  F++M     +      Y  M+   
Sbjct: 241 LF---EESPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGY 291

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALL-GACKIHENVELAEYACSHLLELEPENHG-A 487
            +   +D   E  E+MP  P    W  ++ G C   +N +LA+    +L ++ P+    +
Sbjct: 292 AQYKRMDMGRELFEEMPF-PNIGSWNIMISGYC---QNGDLAQ--ARNLFDMMPQRDSVS 345

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSG--LKKEPGCSSIEVNGEIHKFLAGESSH 541
              +   YA+ G ++    +   M+  G  L +   C ++    +I     G+  H
Sbjct: 346 WAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVH 401



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T  I  + + G+ D AL VF  +  R+   ++ MI+G+        A DLF +M    + 
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDL- 95

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
               ++  +L   + +  + + RM F+ M P   VV     +  M+    R+G +DEA +
Sbjct: 96  ---FSWNLMLTGYARNRRLRDARMLFDSM-PEKDVVS----WNAMLSGYVRSGHVDEARD 147

Query: 441 FIEKMPIVPGASVWGALLGA 460
             ++MP     S W  LL A
Sbjct: 148 VFDRMPHKNSIS-WNGLLAA 166


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 330/569 (57%), Gaps = 47/569 (8%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ A  +FD +    + TW +LI AY+      ++  +F ++       P+ FT   V+ 
Sbjct: 49  LDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEM-DREGVSPDIFTITTVLH 107

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A       G+ +H  + ++  + ++F+ N+L+  YA CG +  A  VF+ +  KD++S
Sbjct: 108 ACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS 167

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN+MI G+ +                                            PNEALS
Sbjct: 168 WNTMIGGYSKNSL-----------------------------------------PNEALS 186

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F ++ L   + PD  T   +L ACA L ++D G ++H  + + G   +  +  +L+DMY
Sbjct: 187 LFGDMVLE--MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMY 244

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG    A  +F  + ++D+  W+ MIAG+ M+G G  A+  F+ M++A ++P+ V+F 
Sbjct: 245 VKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFI 304

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++L ACSHSGL+DEG  FFN M+    V P ++HY C+VD+L R+G L  A +FI+ MPI
Sbjct: 305 SILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPI 364

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P A++WGALL  C+IH +V+LAE    H+ ELEPEN G  VLL+N YA+  KW+ V +L
Sbjct: 365 EPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKL 424

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ +   GLKK PGCS IEV  ++H FLAG SSHP  K+I   L  + +++K  GY P  
Sbjct: 425 RQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKT 484

Query: 568 SHLLQLVEEEDVQ-EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            +   L+  + +Q E AL  HSE+LA+A+G++++ P++ IR+ KNLRVCGDCH +AK IS
Sbjct: 485 RY--ALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFIS 542

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K   REI+LRD  RFHHF+ G C C  +W
Sbjct: 543 KTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 43/259 (16%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++A A      +G+A+HG  +K+         N+L+  YA CG L  A  VF ++  + 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VV+W S+I+ + + G                                           +E
Sbjct: 64  VVTWTSLIAAYAREGL-----------------------------------------SDE 82

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           A+ +FHE+   + V+PD FT  +VL ACA  G+++ G  +H  +++  ++ N ++  +L+
Sbjct: 83  AIRLFHEMD-REGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALM 141

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG+++ A  VF  +  +D+  W+TMI G++      EAL LF  M   ++KP+  
Sbjct: 142 DMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGT 200

Query: 385 TFTNVLCACSHSGLVDEGR 403
           T   +L AC+    +D G+
Sbjct: 201 TLACILPACASLASLDRGK 219



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 8/223 (3%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            S+E A  +F ++P  ++ +WNT+I  YS ++ P ++  +F  +V      P+  T   +
Sbjct: 148 GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMK--PDGTTLACI 205

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A A L     G+ +HG ++++ F  D  ++N+L+  Y  CG   +A  +F MI  KD+
Sbjct: 206 LPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDL 265

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           ++W  MI+G+   GF   AI  + EM    ++PDEV+ +++L AC+    L+      E 
Sbjct: 266 ITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLD------EG 319

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
              F+ +Q   NV P    +  ++   A+ G + +  +    M
Sbjct: 320 WRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM 362



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 2/176 (1%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            VS+L ACA  G + +G  +H    K  +        +L+DMY KCG LD A+ VF  + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            R V  W+++IA +A  G   EA+ LF  M    V P+  T T VL AC+ +G ++ G+ 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             N +     +   +     ++DM  + G +++A     +MP+    S W  ++G 
Sbjct: 121 VHNYIRE-NDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-WNTMIGG 174



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           ++  C ++  L   K++H  +LR G F D   A+ L   +  C +        AR +FD 
Sbjct: 205 ILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVL-----ARLLFDM 259

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           IP  +L TW  +I  Y        +   F ++   +   P+E +F  ++ A +       
Sbjct: 260 IPTKDLITWTVMIAGYGMHGFGNNAITTFNEM-RQAGIEPDEVSFISILYACS-----HS 313

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAIC------GDLAMAY-CVFVMIGKKDVVSWNS 210
           G    G    +  +D+  +   L H+  I       G LAMAY  +  M  + D   W +
Sbjct: 314 GLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGA 373

Query: 211 MISGFV---QGGFFEKAIELYREMEMENV 236
           ++SG          EK  E   E+E EN 
Sbjct: 374 LLSGCRIHHDVKLAEKVAEHVFELEPENT 402


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 340/605 (56%), Gaps = 54/605 (8%)

Query: 55   KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
            +QIH   L+TG   D + A+ L           +E A  +F      +L  WN ++  Y 
Sbjct: 1026 RQIHVHALKTGNIADSFVATTLID--VYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYI 1083

Query: 115  SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
               +  ++  +F  L++ S    ++ T     KA   LV    G+ IH   IK+ F+ DL
Sbjct: 1084 IGNDGKKALELF-SLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 1142

Query: 175  FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
             +++ ++  Y  CGD+  A  VF  I                                  
Sbjct: 1143 HVNSGILDMYIKCGDMVNAGIVFNYISA-------------------------------- 1170

Query: 235  NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
               PD+V   +++S C    +       ++AL I+H ++ S+ V PDE+TF +++ A + 
Sbjct: 1171 ---PDDVAWTSMISGCVDNGN------EDQALRIYHRMRQSR-VMPDEYTFATLIKASSC 1220

Query: 295  LGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
            + A++ G Q+HA +    IKL+C    ++ TSL+DMY KCGN++ A  +F  +  R++ +
Sbjct: 1221 VTALEQGRQLHANV----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 1276

Query: 351  WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
            W+ M+ G A +G   EA++LF  M+   ++P+ V+F  +L ACSH+GL  E   + + M 
Sbjct: 1277 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 1336

Query: 411  PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
              YG+ P ++HY+C+VD LGRAGL+ EA + IE MP    AS+  ALLGAC+I  +VE  
Sbjct: 1337 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETG 1396

Query: 471  EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
            +   + L  LEP +  A VLLSNIYA   +WD+V++ RK M+   +KK+PG S I+V   
Sbjct: 1397 KRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNM 1456

Query: 531  IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
            +H F+  + SHP    IY K++E++  ++  GYVP+   +L  VE+E+ +E++L  HSE+
Sbjct: 1457 LHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE-KERSLYYHSEK 1515

Query: 591  LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
            LAIAYGLIS   S  IR++KNLRVCGDCH   K ISK++ REI+LRD  RFHHFR G CS
Sbjct: 1516 LAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCS 1575

Query: 651  CMDYW 655
            C DYW
Sbjct: 1576 CGDYW 1580



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 213/446 (47%), Gaps = 49/446 (10%)

Query: 55   KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
            K  H +++ +G   D + ++ L T        SL  AR++FD  P+ +L TWN ++ AY+
Sbjct: 641  KCTHARIVVSGSAGDHFLSNNLLT--MYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 115  SSAEP----IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            +S +      Q  +   +L+  S       T   V+K           + +HG  IK   
Sbjct: 699  ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 171  EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
            E D+F+S +L++ Y+ CG +  A  +F  + ++DVV WN M+ G+VQ G  ++A +L+ E
Sbjct: 759  EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 231  MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF-HELQLSKNVNPDEF------ 283
                 ++PDE ++  +L+  ++  + + G+W  + +  +  +L LS + NPD F      
Sbjct: 819  FHRSGLRPDEFSVQLILNGVSEV-NWDEGKWLADQVQAYAAKLSLSDD-NPDVFCWNKKL 876

Query: 284  -----------------------------TFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                         T + VL+A A    +++G Q+H    K G+ 
Sbjct: 877  SECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLD 936

Query: 315  LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
             +  +  SL++MY+K G    A EVF+ +K  D+  W++MI+  A      E+++LF  +
Sbjct: 937  SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL 996

Query: 375  QEAKVKPNAVTFTNVLCACSH--SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
                +KP+  T  +VL ACS    GL    ++  + ++   G +      T ++D+  ++
Sbjct: 997  LHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKT--GNIADSFVATTLIDVYSKS 1054

Query: 433  GLLDEAVEFIEKMPIVPGASVWGALL 458
            G ++EA EF+ +       + W A++
Sbjct: 1055 GKMEEA-EFLFQNKDDLDLACWNAMM 1079



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 212/496 (42%), Gaps = 89/496 (17%)

Query: 52   KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE--------YAREMFDQIPQPNL 103
            K+  Q+ ++  R+GL  D +S   +    +   +   +        YA ++      P++
Sbjct: 810  KEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDV 869

Query: 104  YTWNTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
            + WN  +     + +   +   F+ +   N  Y  +  T   V+ A A      +G+ +H
Sbjct: 870  FCWNKKLSECLWAGDNWGAIECFVNMNGLNIDY--DAVTLLVVLAAVAGTDDLELGKQVH 927

Query: 163  GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
            G+ +KS  + D+ ++NSL++ Y+  G    A  VF  +   D++SWNSMIS   Q    E
Sbjct: 928  GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 987

Query: 223  KAIELYREMEMENVKPDEVTMVAVLSACA------------------------------- 251
            +++ L+ ++  E +KPD  T+ +VL AC+                               
Sbjct: 988  ESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTL 1047

Query: 252  ------------------KKRDLEFGRW------------PNEALSIFHELQLSKNVNPD 281
                               K DL+   W              +AL +F  +  S     D
Sbjct: 1048 IDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGE-KSD 1106

Query: 282  EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
            + T  +   AC  L  +D G QIHA   K G   + ++ + ++DMY KCG++  A  VF+
Sbjct: 1107 QITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 1166

Query: 342  TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
             + + D   W++MI+G    G   +AL ++ RM++++V P+  TF  ++ A S    +++
Sbjct: 1167 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 1226

Query: 402  GRMFFNQM-------EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            GR     +       +P  G        T +VDM  + G +++A    +KM  V   ++W
Sbjct: 1227 GRQLHANVIKLDCVSDPFVG--------TSLVDMYAKCGNIEDAYRLFKKMN-VRNIALW 1277

Query: 455  GALLGACKIHENVELA 470
             A+L     H N E A
Sbjct: 1278 NAMLVGLAQHGNAEEA 1293



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 15/249 (6%)

Query: 51   IKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
            + Q KQIH   ++ G   D +  S    ++  C       +  A  +F+ I  P+   W 
Sbjct: 1123 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG-----DMVNAGIVFNYISAPDDVAWT 1177

Query: 108  TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            ++I     +    Q+  I+ ++   S   P+E+TF  +IKA++ +     G+ +H  VIK
Sbjct: 1178 SMISGCVDNGNEDQALRIYHRM-RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 1236

Query: 168  SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
                 D F+  SL+  YA CG++  AY +F  +  +++  WN+M+ G  Q G  E+A+ L
Sbjct: 1237 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 1296

Query: 228  YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
            ++ M+   ++PD V+ + +LSAC+           +EA    H +     + P+   +  
Sbjct: 1297 FKSMKSHGIEPDRVSFIGILSACSH------AGLTSEAYEYLHSMPNDYGIEPEIEHYSC 1350

Query: 288  VLSACAQLG 296
            ++ A  + G
Sbjct: 1351 LVDALGRAG 1359


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 346/623 (55%), Gaps = 58/623 (9%)

Query: 41   VFSLIKQCKNIKQ----LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
            V S+++ C +++       QIH   ++ G+  D + ++ L           +E A  +F 
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALID--VYSKRGKMEEAEFLFV 1096

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
                 +L +WN ++  Y  S +  ++  +++ L+  S    ++ T     KAA  LV  +
Sbjct: 1097 NQDGFDLASWNAIMHGYIVSGDFPKALRLYI-LMQESGERSDQITLVNAAKAAGGLVGLK 1155

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             G+ IH +V+K  F  DLF+++ ++  Y  CG++  A  VF  I                
Sbjct: 1156 QGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPS-------------- 1201

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
                                 PD+V    ++S C +    E       AL  +H+++LSK
Sbjct: 1202 ---------------------PDDVAWTTMISGCVENGQEE------HALFTYHQMRLSK 1234

Query: 277  NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKCGN 332
             V PDE+TF +++ AC+ L A++ G QIHA +    +KLNC    ++ TSL+DMY KCGN
Sbjct: 1235 -VQPDEYTFATLVKACSLLTALEQGRQIHANI----VKLNCAFDPFVMTSLVDMYAKCGN 1289

Query: 333  LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
            ++ A  +F    +R +  W+ MI G A +G  +EAL  F  M+   V P+ VTF  VL A
Sbjct: 1290 IEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSA 1349

Query: 393  CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
            CSHSGLV E    F  M+  YG+ P ++HY+C+VD L RAG ++EA + I  MP    AS
Sbjct: 1350 CSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASAS 1409

Query: 453  VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
            ++  LL AC++  + E  +     LL LEP +  A VLLSN+YA   +W+NV+  R  MR
Sbjct: 1410 MYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMR 1469

Query: 513  VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
               +KK+PG S +++  ++H F+AG+ SH     IY+K++ I+ R++  GYVP+    L 
Sbjct: 1470 KVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALV 1529

Query: 573  LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
             VEEED +E +L  HSE+LAIAYGL+   PS  +R++KNLRVCGDCH+  K ISK++ RE
Sbjct: 1530 DVEEED-KECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKRE 1588

Query: 633  ILLRDRYRFHHFRGGNCSCMDYW 655
            I+LRD  RFHHFR G CSC DYW
Sbjct: 1589 IVLRDANRFHHFRNGICSCGDYW 1611



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 212/483 (43%), Gaps = 49/483 (10%)

Query: 2    TDNPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHP-VFSLIKQCKNIKQL---KQI 57
            +DNP      ++   + L    +         H  H  P  FS+++Q      L   K+ 
Sbjct: 619  SDNPSPTAMIMALMHLRLRAATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRA 678

Query: 58   HTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN--LYTWNTLIRAYSS 115
            H ++L +G   D +  + L T  A     SL  AR++FD  P  N  L TWN ++ A ++
Sbjct: 679  HARILTSGHHPDRFVTNNLITMYA--KCGSLSSARKLFDTTPDTNRDLVTWNAILSALAA 736

Query: 116  SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
             A+         +L+  S       T   V K           +++HG  +K   + D+F
Sbjct: 737  HADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVF 796

Query: 176  ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
            ++ +L++ YA  G +  A  +F  +  +DVV WN M+  +V      +A+ L+ E     
Sbjct: 797  VAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTG 856

Query: 236  VKPDEVTM--VAVLSACAKKRDLEFGRWP-------------------NEALSIFHEL-- 272
             +PD+VT+  ++ +  C KK  LE  ++                    N+ALS F +   
Sbjct: 857  FRPDDVTLRTLSRVVKC-KKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGE 915

Query: 273  ----------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                       ++  V  D  TFV +L+  A L  +++G QIH  + + G+     +   
Sbjct: 916  AWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNC 975

Query: 323  LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
            LI+MY K G++ +A  VF  +   D+  W+TMI+G  + G    ++ +F  +    + P+
Sbjct: 976  LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPD 1035

Query: 383  AVTFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVVPGVKHYTCMVDMLGRAGLLDEAV 439
              T  +VL ACS    ++ G     Q+       GVV      T ++D+  + G ++EA 
Sbjct: 1036 QFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA- 1091

Query: 440  EFI 442
            EF+
Sbjct: 1092 EFL 1094



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 199/452 (44%), Gaps = 91/452 (20%)

Query: 44   LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
            ++K  KNI +LKQ           F  Y A+KLF                M+D     ++
Sbjct: 870  VVKCKKNILELKQ-----------FKAY-ATKLF----------------MYDD-DGSDV 900

Query: 104  YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
              WN  +  +    E  ++   F+ ++ NS    +  TF  ++   A L    +G+ IHG
Sbjct: 901  IVWNKALSRFLQRGEAWEAVDCFVDMI-NSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959

Query: 164  MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
            +V++S  +  + + N LI+ Y   G ++ A  VF  + + D++SWN+MISG    G  E 
Sbjct: 960  IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEEC 1019

Query: 224  AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
            ++ ++  +  +++ PD+ T+ +VL AC+    LE G +                      
Sbjct: 1020 SVGMFVHLLRDSLLPDQFTVASVLRACSS---LEGGYY---------------------- 1054

Query: 284  TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
                            +  QIHA   K G+ L+ +++T+LID+Y+K G +++A  +F   
Sbjct: 1055 ----------------LATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQ 1098

Query: 344  KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
               D+  W+ ++ G+ + G   +AL L+  MQE+  + + +T  N   A +  GLV    
Sbjct: 1099 DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVN--AAKAAGGLVG--- 1153

Query: 404  MFFNQMEPVYGVVPGVKH--------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
                Q + ++ VV  VK          + ++DM  + G ++ A     ++P  P    W 
Sbjct: 1154 --LKQGKQIHAVV--VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWT 1208

Query: 456  ALLGAC--KIHENVELAEYACSHLLELEPENH 485
             ++  C     E   L  Y    L +++P+ +
Sbjct: 1209 TMISGCVENGQEEHALFTYHQMRLSKVQPDEY 1240


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 310/483 (64%), Gaps = 12/483 (2%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ N ++  Y    ++A A  VF  +  +D+VSWN+MI G+   G    A E++   E
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                 D  +  +++SA AK R         EAL ++ E+  + ++ PD  T VSV+SAC
Sbjct: 82  ----DRDAFSWSSMISAYAKSRR------SKEALELWREMH-AASIIPDCITLVSVVSAC 130

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           + LGA+ +G ++H  ++   I+L+  L T+LIDMY KCG+++ A  VF  +  +DV  WS
Sbjct: 131 SDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWS 190

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +MI G A +G G E+L LFS+M    +KPN VTF  VL AC+H GLV EG+ +F  M  V
Sbjct: 191 SMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEV 250

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +G+ P V+HY CMVD+LGR+G ++EA + I  M   P   +W ALLGAC+IH+NVE+AE 
Sbjct: 251 HGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEE 310

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A + L  L+P   G  VLLSNIYA+   W+ V+E+RK +R   +++ PG SSIE + +IH
Sbjct: 311 AMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIH 370

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           +F++G+  HP  KEIY  L+E++ RLK  GY P    +LQ ++E+  +E++L  HSE+LA
Sbjct: 371 EFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQS-KERSLAEHSEKLA 429

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+ L++      IRI KNLR C DCH+  KLIS +Y+R++++RDR RFHHF  G CSC 
Sbjct: 430 IAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCK 489

Query: 653 DYW 655
           DYW
Sbjct: 490 DYW 492



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+FD     + ++W+++I AY+ S    ++  ++ ++ + +   P+  T   V+ A +
Sbjct: 73  AREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM-HAASIIPDCITLVSVVSACS 131

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    VG  +H  V  +  E DL +  +LI  YA CGD+  A  VF  + +KDV +W+S
Sbjct: 132 DLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSS 191

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           MI G    G   +++ L+ +M  E +KP+ VT V VL AC
Sbjct: 192 MIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIAC 231



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 63/183 (34%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFV-------------------------------WSTM 354
           MY K G +D A + F     RDVF+                               W+TM
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60

Query: 355 IAGFAMYG-------------------------------CGREALDLFSRMQEAKVKPNA 383
           I G+AM G                                 +EAL+L+  M  A + P+ 
Sbjct: 61  IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +T  +V+ ACS  G +  G      +E    +   +K  T ++DM  + G ++ A    +
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVHRFVES-NRIELDLKLGTALIDMYAKCGDIESAQRVFD 179

Query: 444 KMP 446
           +MP
Sbjct: 180 RMP 182


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/579 (38%), Positives = 348/579 (60%), Gaps = 24/579 (4%)

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C LG F     +  AR+ FD +   ++ +WNT+I  Y+ + E  ++  +F +    SP  
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE----SP-V 273

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
            + FT+  ++      +Q R+ +    +  +    +++   N+++  Y     + MA  +
Sbjct: 274 HDVFTWTAMVSG---YIQNRMVEEARELFDRMPERNEVSW-NAMLAGYVQGERVEMAKEL 329

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F ++  ++V +WN+MI+G+ Q G   +A  L+ +M     K D V+  A+++  ++    
Sbjct: 330 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGH- 384

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EAL +F  L   +    +  +F S LS CA + A+++G Q+H ++ K G +  
Sbjct: 385 -----SYEALRLF-VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 438

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           C++  +L+ MY KCG++++A ++F  +  +D+  W+TMIAG++ +G G EAL  F  M+ 
Sbjct: 439 CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKR 498

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             +KP+  T   VL ACSH+GLVD+GR +F+ M   YGV P  +HY CMVD+LGRAGLL+
Sbjct: 499 EGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLE 558

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA   ++ MP  P A++WG LLGA ++H N ELAE A   +  +EPEN G  VLLSN+YA
Sbjct: 559 EAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYA 618

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            +G+W +V +LR  MR  G+KK PG S IE+  + H F  G+  HP   EI++ L+++  
Sbjct: 619 SSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDL 678

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           R+K  GYV   S +L  VEEE+ +E+ +  HSERLA+AYG++ V   +PIR++KNLRVC 
Sbjct: 679 RMKKAGYVSKTSVVLHDVEEEE-KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCE 737

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   K ++K+  R I+LRD  RFHHF+ G+CSC DYW
Sbjct: 738 DCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 40/360 (11%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           ++  WN  I +Y  +    ++  +F ++    P + +  ++  +I    R  +F + +  
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRM----PRWSS-VSYNAMISGYLRNGEFELAR-- 110

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
             M+     E DL   N +I  Y    +L  A  +F  + ++DV SWN+++SG+ Q G  
Sbjct: 111 --MLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCV 168

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           + A  ++  M  +N    +V+  A+LSA  +   LE      EA  +F   +        
Sbjct: 169 DDARRVFDRMPEKN----DVSWNALLSAYVQNSKLE------EACVLFGSRE-------- 210

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEVF 340
              +  V   C   G +     + A+     +K+   ++  ++I  Y + G +D+A ++F
Sbjct: 211 --NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF 268

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
                 DVF W+ M++G+       EA +LF RM E     N V++  +L        V+
Sbjct: 269 DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVE 324

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             +  F+ M         V  +  M+    + G + EA    +KMP     S W A++  
Sbjct: 325 MAKELFDVMP-----CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-WAAMIAG 378



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 154/334 (46%), Gaps = 36/334 (10%)

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           S + D+   N  I  Y   G  + A  VF  + +   VS+N+MISG+++ G FE A  L+
Sbjct: 54  SGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLF 113

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
            EM     + D V+   ++    + R+L       +A  +F  +        D  ++ ++
Sbjct: 114 DEMP----ERDLVSWNVMIKGYVRNRNL------GKARELFERMP-----ERDVCSWNTI 158

Query: 289 LSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           LS  AQ G +D   ++  +M +K  +  N     +L+  Y +   L++A  +F + ++  
Sbjct: 159 LSGYAQNGCVDDARRVFDRMPEKNDVSWN-----ALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+ ++ GF       EA   F  M   KV+ + V++  ++   + +G +DE R  F+
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFDSM---KVR-DVVSWNTIITGYAQNGEIDEARQLFD 269

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
           +  PV+ V      +T MV    +  +++EA E  ++MP     S W A+L      E V
Sbjct: 270 E-SPVHDVFT----WTAMVSGYIQNRMVEEARELFDRMPERNEVS-WNAMLAGYVQGERV 323

Query: 468 ELAEYACSHLLELEP-ENHGALVLLSNIYAKTGK 500
           E+A+     L ++ P  N      +   YA+ GK
Sbjct: 324 EMAK----ELFDVMPCRNVSTWNTMITGYAQCGK 353


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/740 (35%), Positives = 383/740 (51%), Gaps = 112/740 (15%)

Query: 24  NP-TTLTVNNGHQHHPHP----VF-SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSAS 74
           NP T LT     Q H  P     F +L+K C  +++L    Q+H  + R GL  D +SA+
Sbjct: 32  NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAA 91

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
            L    A G      YA ++FD++P+   ++ +W  LI AYSS+    ++F  F ++ + 
Sbjct: 92  ALVD--AYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWM 149

Query: 133 SPYFPNEFTFPFVIKAAARLVQ---------FRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
             +  +E     V+   A +            R G A+HG+V+K  F     + NS++H 
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 184 YAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN------ 235
           Y+ C D+  A+ VF  + I ++DVVSWNS+ISGF   G  E+A+  + +M  E       
Sbjct: 210 YSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEP 269

Query: 236 ------------------------------------VKPDEVTMVAVLSACAKKRDLEFG 259
                                               V  D V + A+L   A+  +L   
Sbjct: 270 NRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALA 329

Query: 260 R-------------W------------PNEALSIFHELQLSKN-----VNPDEFTFVSVL 289
           R             W            P EAL +F ++ +  N     V P+  T VSV+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRD 347
           +AC++LGA      IH      G+  +  + ++LIDM  KCG+++   +VF  +   +R 
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRT 449

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  WS+MI    ++G G+ AL+LFS M+    +PN +T+ +VL ACSH+GLV++G+  FN
Sbjct: 450 VVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFN 509

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            ME  YG+ P  KHY C+VD+LGRAG LDEA   I  MPI    ++WG+LL AC +H N 
Sbjct: 510 SMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNC 569

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           +L E     +L L+  + G  VLL+N+Y   G+WD+V  +R  +R SGL+K PG S IE+
Sbjct: 570 KLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEI 629

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQE--QALN 585
             E++ F+A + SHP  + IY +LD +  R++        + L   VE+ D+        
Sbjct: 630 GNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTETGL--NVEDGDIAGLIXRCK 687

Query: 586 LHSERLAIAYGLI----------SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
            HSERLAIA+GLI          S+  + PIRI KNLRVC DCH   KL+SK+ +RE+++
Sbjct: 688 YHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRELIV 747

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD +RFHHFR G CSC DYW
Sbjct: 748 RDAHRFHHFRDGFCSCGDYW 767



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 204/486 (41%), Gaps = 81/486 (16%)

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I   + + WN+LI A +++  P Q+ + F   +       N FTFP ++KA A L +  
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISG 214
               +H  + +     D F + +L+  Y  CG    A  VF  +  G  DVVSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 215 FVQGGFFEKAIELYREMEM-------ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           +   G  ++A   +  M         E    D V++ A++SACA                
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA---------------- 173

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                             V   S C + G+      +H  + K G  ++ +L  S++ MY
Sbjct: 174 ------------------VGCGSNCLRRGS-----AVHGLVVKYGFGVSTHLGNSMVHMY 210

Query: 328 TKCGNLDKALEVFHT--VKSRDVFVWSTMIAGFAMYGCGREALDLFSRM---QEAKVKPN 382
           + C ++  A  VF+   ++ RDV  W+++I+GF + G    AL  F  M     + V+PN
Sbjct: 211 SACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPN 270

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG---VVPGVKHYTCMVDMLGRAGLLDEAV 439
            VT   +L +C+  G V+        +   +    V   V   T ++DM  R G L  A 
Sbjct: 271 RVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAR 330

Query: 440 EFIEKMPIVPGASV--WGALLGACKIHENVELAEYACSHLLELEPENH--------GALV 489
           E  +    V G +V  W A++     +E     E A     ++  E +         A+ 
Sbjct: 331 EIFDG---VEGKNVVCWSAMIAG---YEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVT 384

Query: 490 LLSNIYA--KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
           L+S I A  + G   + S + K+   +GL ++   +S  ++        G+  H   +++
Sbjct: 385 LVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALID---MCAKCGDIEHG--RQV 439

Query: 548 YSKLDE 553
           +S++DE
Sbjct: 440 FSEMDE 445


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 359/665 (53%), Gaps = 92/665 (13%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q K++H   +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 327

Query: 90  Y---------------------AREMFDQIPQPNL----YTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F  + + N+     TW  +I  YS      ++  
Sbjct: 328 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 387

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----------EDDL 174
           +F Q+++ S   PN  T   V+ A A L  F  G  IH   +K+            ++DL
Sbjct: 388 LFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446

Query: 175 FISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
            + N+LI  Y+ C     A  +F  + + +++VV+W  MI G  Q G    A++L+ EM 
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 506

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            E                       +G                  V P+ +T   +L AC
Sbjct: 507 SE----------------------PYG------------------VAPNAYTISCILMAC 526

Query: 293 AQLGAMDIGVQIHAK-MKKQGIKLNCYLTTS-LIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A L A+ IG QIHA  ++    + + Y   + LIDMY+KCG++D A  VF ++  +    
Sbjct: 527 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS 586

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++M+ G+ M+G G EALD+F +M++A   P+ +TF  VL ACSH G+VD+G  +F+ M 
Sbjct: 587 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 646

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY C +D+L R+G LD+A   ++ MP+ P A VW ALL AC++H NVELA
Sbjct: 647 ADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELA 706

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E+A + L+E+  EN G+  L+SNIYA  G+W +V+ +R  M+ SG+KK PGCS ++    
Sbjct: 707 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 766

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
              F  G+ SHPL  +IY+ L+ ++ R+K+ GYVP  +  L  V+EE+ +   L  HSE+
Sbjct: 767 TASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE-KNNLLVEHSEK 825

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+ G+CS
Sbjct: 826 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 885

Query: 651 CMDYW 655
           C  YW
Sbjct: 886 CGGYW 890



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 204/414 (49%), Gaps = 57/414 (13%)

Query: 87  SLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQL---VYNSPYFPNE- 139
           SLE A  +FD+I Q    ++ +WN+++ A+  S+    +  +F ++   V+  P   NE 
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP--TNER 262

Query: 140 ---FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
               +   ++ A   L      + +HG  I++    D+F+ N+LI  YA CG +  A  V
Sbjct: 263 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 322

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F M+  KDVVSWN+M++G+ Q G FE A EL++ M  EN+  D VT  AV++  +++   
Sbjct: 323 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQR--- 379

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 +EAL++F ++  S ++ P+  T +SVLSACA LGA   G +IHA   K     N
Sbjct: 380 ---GCSHEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLK-----N 430

Query: 317 CYLT---------------TSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFA 359
           C LT                +LIDMY+KC +   A  +F  +  + R+V  W+ MI G A
Sbjct: 431 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 490

Query: 360 MYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-------E 410
            YG   +AL LF  M  +   V PNA T + +L AC+H   +  G+     +        
Sbjct: 491 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 550

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             Y V        C++DM  + G +D A    + M      S W +++    +H
Sbjct: 551 SAYFVA------NCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMH 597



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 195/399 (48%), Gaps = 47/399 (11%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTG----------LFFDPYSASKLFTPCALGT-- 84
           +P    SL+K+CK+   + QIH Q++ +G          +      +    +P +LGT  
Sbjct: 36  YPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGV 95

Query: 85  ------FSSLEYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
                   + +YA  + +++ P P ++ WN LIR +        +  +  +++  +   P
Sbjct: 96  VASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRML-RAGTRP 153

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FT P V+KA   L  +R G A HG++  + FE ++FI N+L+  Y+ CG L  A  +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 198 VMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEM------ENVKPDEVTMVAVLS 248
             I   G  DV+SWNS++S  V+      A++L+ +M +       N + D +++V +L 
Sbjct: 214 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 273

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           AC   + +   +         H   +     PD F   +++ A A+ G M+  V++   M
Sbjct: 274 ACGSLKAVPQTK-------EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 309 K-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGC 363
           + K  +  N     +++  Y++ GN + A E+F  ++      DV  W+ +IAG++  GC
Sbjct: 327 EFKDVVSWN-----AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 381

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
             EAL+LF +M  +   PN VT  +VL AC+  G   +G
Sbjct: 382 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 420


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 345/570 (60%), Gaps = 19/570 (3%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAA 149
           AR +F+++       WN +I  Y  S     +F +F ++V  S   P +EFTF  V+ A 
Sbjct: 253 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV--SEKVPLDEFTFTSVLSAC 310

Query: 150 ARLVQFRVGQAIHGMVIK--SSF--EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           A    F  G+++HG +I+   +F  E  L ++N+L+  Y+  G + +A  +F  +  KDV
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV 370

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWN+++SG++  G  +KA+E+++ M  +N    +++ + ++S          G    +A
Sbjct: 371 VSWNTILSGYIDSGCLDKAVEVFKVMPYKN----DLSWMVMVSGYVH------GGLSEDA 420

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L +F++++ +++V P ++T+   ++AC +LGA+  G Q+HA + + G + +     +L+ 
Sbjct: 421 LKLFNQMR-AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLT 479

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG ++ A  VF  + + D   W+ MI+    +G GREAL+LF +M    + P+ ++
Sbjct: 480 MYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 539

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  +L AC+H+GLVDEG  +F  M+  +G+ PG  HY  ++D+LGR+G + EA + I+ M
Sbjct: 540 FLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTM 599

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P  S+W A+L  C+ + ++E   YA   L  + P++ G  +LLSN Y+  G+W + +
Sbjct: 600 PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAA 659

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK MR  G+KKEPGCS IEV  +IH FL G++ HP  +E+Y  L+ I AR++  GYVP
Sbjct: 660 RVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVP 719

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           +   +L  +E  + +E  L  HSE+LA+ +GL+ + P   + ++KNLR+CGDCHT    +
Sbjct: 720 DTKFVLHDMEPHE-KEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFM 778

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK   REI++RD  RFHHF+ G CSC +YW
Sbjct: 779 SKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 193/470 (41%), Gaps = 58/470 (12%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           HPH    LI     +         + R+     P +A+ L    A      L  A   FD
Sbjct: 62  HPHLTLRLI-HLYTLSPDLATPAALFRSDPDPGPVAATSLVA--AHAAAGRLRDAAAFFD 118

Query: 97  QIPQPNLYT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
            +P     T   N ++ A++ ++    +  +F  L+ +    P++++F  +I A  ++  
Sbjct: 119 AVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHN 178

Query: 155 FRVGQA--IHGMVIKSSFEDDLFISNSLIHFYAIC------------------------- 187
                   +H  V+KS     L +SN+LI  Y  C                         
Sbjct: 179 LAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWT 238

Query: 188 ---------GDLAMAYCVFVMI-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
                    GD+  A  VF  + GK DVV WN+MISG+VQ G    A EL+R M  E V 
Sbjct: 239 TMVVGYVRRGDVNAARSVFEEVDGKFDVV-WNAMISGYVQSGMCADAFELFRRMVSEKVP 297

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV--SVLSACAQL 295
            DE T  +VLSACA       G+  +  +     ++L  N  P+    V  ++++  ++ 
Sbjct: 298 LDEFTFTSVLSACANAGFFVHGKSVHGQI-----IRLQPNFVPEAALPVNNALVTLYSKG 352

Query: 296 GAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           G + I  +I   M  K  +  N  L+      Y   G LDKA+EVF  +  ++   W  M
Sbjct: 353 GKIVIAKRIFDTMNLKDVVSWNTILSG-----YIDSGCLDKAVEVFKVMPYKNDLSWMVM 407

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           ++G+   G   +AL LF++M+   VKP   T+   + AC   G +  GR     +    G
Sbjct: 408 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-G 466

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
                     ++ M  + G +++A      MP +   S W A++ A   H
Sbjct: 467 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVS-WNAMISALGQH 515


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 336/580 (57%), Gaps = 48/580 (8%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           +++ C       L+ A+ +F ++   ++ ++ ++I  Y+      ++  +F ++      
Sbjct: 340 MYSKCG-----DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM-EEEGI 393

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P+ +T   V+   AR      G+ +H  + ++    D+F+SN+L+  YA CG +  A  
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  +  KD++SWN++I G+ +  +                                   
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCY----------------------------------- 478

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                  NEALS+F+ L   K  +PDE T   VL ACA L A D G +IH  + + G   
Sbjct: 479 ------ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + ++  SL+DMY KCG L  A  +F  + S+D+  W+ MIAG+ M+G G+EA+ LF++M+
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           +A ++ + ++F ++L ACSHSGLVDEG  FFN M     + P V+HY C+VDML R G L
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
            +A  FIE MPI P A++WGALL  C+IH +V+LAE     + ELEPEN G  VL++NIY
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIY 712

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           A+  KW+ V  LRK +   GL+K PGCS IE+ G ++ F+AG+SS+P  + I + L ++ 
Sbjct: 713 AEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVR 772

Query: 556 ARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVC 615
           AR+   GY P   + L   EE + +E+AL  HSE+LA+A G+IS    + IR+ KNLRVC
Sbjct: 773 ARMIEEGYSPLTKYALIDAEEME-KEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 831

Query: 616 GDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           GDCH +AK +SKL  REI+LRD  RFH F+ G+CSC  +W
Sbjct: 832 GDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 195/440 (44%), Gaps = 58/440 (13%)

Query: 28  LTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCA 81
           L V+      P  + S+++ C   K++K  K++   +   G   D    SKL   +T C 
Sbjct: 84  LCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCG 143

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                 L+ A  +FD++       WN L+   + S +   S  +F +++ +S    + +T
Sbjct: 144 -----DLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYT 197

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  V K+ + L     G+ +HG ++KS F +   + NSL+ FY     +  A  VF  + 
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           ++DV+SWNS+I+G+V  G  EK + ++ +M                              
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQM------------------------------ 287

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                       L   +  D  T VSV + CA    + +G  +H+   K           
Sbjct: 288 ------------LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY+KCG+LD A  VF  +  R V  +++MIAG+A  G   EA+ LF  M+E  + P
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP 395

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQM-EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           +  T T VL  C+   L+DEG+     + E   G    V +   ++DM  + G + EA  
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAEL 453

Query: 441 FIEKMPIVPGASVWGALLGA 460
              +M +    S W  ++G 
Sbjct: 454 VFSEMRVKDIIS-WNTIIGG 472



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 188/389 (48%), Gaps = 61/389 (15%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q+H  +L++G F +  S         L     ++ AR++FD++ + ++ +WN++I  Y 
Sbjct: 215 EQLHGFILKSG-FGERNSVGNSLVAFYLKN-QRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 115 SSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S+    +   +F+Q++ +            F   A +RL+   +G+A+H + +K+ F  +
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLIS--LGRAVHSIGVKACFSRE 330

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
               N+L+  Y+ CGDL  A  VF  +  + VVS+ SMI+G+ + G              
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL------------- 377

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EA+ +F E++  + ++PD +T  +VL+ CA
Sbjct: 378 ----------------------------AGEAVKLFEEME-EEGISPDVYTVTAVLNCCA 408

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           +   +D G ++H  +K+  +  + +++ +L+DMY KCG++ +A  VF  ++ +D+  W+T
Sbjct: 409 RYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 468

Query: 354 MIAGFAMYGCGREALDLFS-RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +I G++      EAL LF+  ++E +  P+  T   VL AC+     D+GR        +
Sbjct: 469 IIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGR-------EI 521

Query: 413 YGVVPGVKHYT------CMVDMLGRAGLL 435
           +G +    +++       +VDM  + G L
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGAL 550



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 120/219 (54%), Gaps = 11/219 (5%)

Query: 39  HPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           + V +++  C   + L   K++H  +    L FD + ++ L   +  C      S++ A 
Sbjct: 398 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG-----SMQEAE 452

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
            +F ++   ++ +WNT+I  YS +    ++  +F  L+    + P+E T   V+ A A L
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
             F  G+ IHG ++++ +  D  ++NSL+  YA CG L +A+ +F  I  KD+VSW  MI
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +G+   GF ++AI L+ +M    ++ DE++ V++L AC+
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 359/665 (53%), Gaps = 92/665 (13%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q K++H   +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 334

Query: 90  Y---------------------AREMFDQIPQPNL----YTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F  + + N+     TW  +I  YS      ++  
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 394

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----------EDDL 174
           +F Q+++ S   PN  T   V+ A A L  F  G  IH   +K+            ++DL
Sbjct: 395 LFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 453

Query: 175 FISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
            + N+LI  Y+ C     A  +F  + + +++VV+W  MI G  Q G    A++L+ EM 
Sbjct: 454 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 513

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            E                       +G                  V P+ +T   +L AC
Sbjct: 514 SE----------------------PYG------------------VAPNAYTISCILMAC 533

Query: 293 AQLGAMDIGVQIHAK-MKKQGIKLNCYLTTS-LIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A L A+ IG QIHA  ++    + + Y   + LIDMY+KCG++D A  VF ++  +    
Sbjct: 534 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS 593

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++M+ G+ M+G G EALD+F +M++A   P+ +TF  VL ACSH G+VD+G  +F+ M 
Sbjct: 594 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 653

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY C +D+L R+G LD+A   ++ MP+ P A VW ALL AC++H NVELA
Sbjct: 654 ADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELA 713

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E+A + L+E+  EN G+  L+SNIYA  G+W +V+ +R  M+ SG+KK PGCS ++    
Sbjct: 714 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 773

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
              F  G+ SHPL  +IY+ L+ ++ R+K+ GYVP  +  L  V+EE+ +   L  HSE+
Sbjct: 774 TASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE-KNNLLVEHSEK 832

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+ G+CS
Sbjct: 833 LALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 892

Query: 651 CMDYW 655
           C  YW
Sbjct: 893 CGGYW 897



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 204/414 (49%), Gaps = 57/414 (13%)

Query: 87  SLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQL---VYNSPYFPNE- 139
           SLE A  +FD+I Q    ++ +WN+++ A+  S+    +  +F ++   V+  P   NE 
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP--TNER 269

Query: 140 ---FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
               +   ++ A   L      + +HG  I++    D+F+ N+LI  YA CG +  A  V
Sbjct: 270 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 329

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F M+  KDVVSWN+M++G+ Q G FE A EL++ M  EN+  D VT  AV++  +++   
Sbjct: 330 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQR--- 386

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 +EAL++F ++  S ++ P+  T +SVLSACA LGA   G +IHA   K     N
Sbjct: 387 ---GCSHEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLK-----N 437

Query: 317 CYLT---------------TSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFA 359
           C LT                +LIDMY+KC +   A  +F  +  + R+V  W+ MI G A
Sbjct: 438 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 497

Query: 360 MYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-------E 410
            YG   +AL LF  M  +   V PNA T + +L AC+H   +  G+     +        
Sbjct: 498 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 557

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             Y V        C++DM  + G +D A    + M      S W +++    +H
Sbjct: 558 SAYFVA------NCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMH 604



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 195/399 (48%), Gaps = 47/399 (11%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTG----------LFFDPYSASKLFTPCALGT-- 84
           +P    SL+K+CK+   + QIH Q++ +G          +      +    +P +LGT  
Sbjct: 43  YPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGV 102

Query: 85  ------FSSLEYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
                   + +YA  + +++ P P ++ WN LIR +        +  +  +++  +   P
Sbjct: 103 VASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRML-RAGTRP 160

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FT P V+KA   L  +R G A HG++  + FE ++FI N+L+  Y+ CG L  A  +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 198 VMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEM------ENVKPDEVTMVAVLS 248
             I   G  DV+SWNS++S  V+      A++L+ +M +       N + D +++V +L 
Sbjct: 221 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 280

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           AC   + +   +         H   +     PD F   +++ A A+ G M+  V++   M
Sbjct: 281 ACGSLKAVPQTK-------EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 309 K-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGC 363
           + K  +  N     +++  Y++ GN + A E+F  ++      DV  W+ +IAG++  GC
Sbjct: 334 EFKDVVSWN-----AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 388

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
             EAL+LF +M  +   PN VT  +VL AC+  G   +G
Sbjct: 389 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 427


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 325/569 (57%), Gaps = 45/569 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E AR +FD++  P+L T+N LI  YS +     S  +F +LV      P+  T   +I 
Sbjct: 272 MECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELV-GMGLRPSSSTLVALIP 330

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             +      +   +H  V+K+  + +  +S +L   Y    D+  A   F  + +K + S
Sbjct: 331 VHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMES 390

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN+MISG+ Q G  E A+ L+++M                                +AL 
Sbjct: 391 WNAMISGYAQNGLTEMAVALFQQM--------------------------------QAL- 417

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                    NV P+  T  S LSACAQLGA+ +G  +H  +  + ++LN Y+ T+LIDMY
Sbjct: 418 ---------NVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMY 468

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++ +A  +F ++ +++V  W+ MI+G+ ++G G EAL L+  M +A + P + TF 
Sbjct: 469 VKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFL 528

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP- 446
           +VL ACSH GLV EG   F  M   YG+ PG++H TCMVD+LGRAG L EA E I + P 
Sbjct: 529 SVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPK 588

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
              G  +WGALLGAC +H++ +LA+ A   L ELEPEN G  VLLSN+Y    ++   + 
Sbjct: 589 SAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAV 648

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R+  +   L K PGC+ IE+    H F+AG+ +HP    IY  L+++ A++   GY P+
Sbjct: 649 VRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPD 708

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
               L  VEEE+ +E  + +HSE+LAIA+GL++ EP   IRI+KNLRVC DCH   K+IS
Sbjct: 709 TEAALYDVEEEE-KEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIIS 767

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+  R I++RD  RFHHFR G CSC DYW
Sbjct: 768 KVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/463 (20%), Positives = 181/463 (39%), Gaps = 104/463 (22%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           LI     +  L Q+    L +G +  D   AS L    A    S   +   ++   P+P+
Sbjct: 30  LISLSSTLGHLDQLLAVSLASGHYTLDHAPASSLLLRYA-SLRSPPAHLLRLYRAFPRPD 88

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG---- 158
            +  N+L+R+  +    +++ ++F          P+ F+F F   + A     R G    
Sbjct: 89  RFLRNSLLRSLPT----LRADLLFPS--------PDSFSFAFAATSLASSCS-RGGISPP 135

Query: 159 -------QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                  + +H + + S F  D F++++L   Y        A  VF  +   D V WN++
Sbjct: 136 SAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTL 195

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           ++G                                                +EAL  F  
Sbjct: 196 LAGLSG---------------------------------------------SEALEAFVR 210

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +  + +V PD  T  SVL A A++    +G  +HA  +K G+  + ++ T LI +Y KCG
Sbjct: 211 MAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCG 270

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV-- 389
           +++ A  +F  ++  D+  ++ +I+G+++ G    +++LF  +    ++P++ T   +  
Sbjct: 271 DMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIP 330

Query: 390 ---------LCACSHSGLVDEG--------------RMFFNQMEP---VYGVVP--GVKH 421
                    L  C H+ +V  G                 FN M+     +  +P   ++ 
Sbjct: 331 VHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMES 390

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALLGAC 461
           +  M+    + GL + AV   ++M    + P      + L AC
Sbjct: 391 WNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC 433


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/672 (33%), Positives = 375/672 (55%), Gaps = 70/672 (10%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           + K + + KQ+H  ++R G   + + ++    L++ C       L+Y  ++FD++ Q N+
Sbjct: 87  RTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCG-----ELDYTIKLFDKMSQRNM 141

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHG 163
            +W ++I  ++ ++   ++   F Q+         +F    V++A   L   + G  +H 
Sbjct: 142 VSWTSIITGFAHNSRFQEALSSFCQMRIEGE-IATQFALSSVLQACTSLGAIQFGTQVHC 200

Query: 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           +V+K  F  +LF+ ++L   Y+ CG+L+ A   F  +  KD V W SMI GFV+ G F+K
Sbjct: 201 LVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKK 260

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------------WPNEALSI 268
           A+  Y +M  ++V  D+  + + LSAC+  +   FG+               +   AL+ 
Sbjct: 261 ALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTD 320

Query: 269 FH----ELQLSKNV---NPDEFTFVS---VLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
            +    ++  + NV   + D  + VS   ++    ++  ++  +     ++++GI+ N +
Sbjct: 321 MYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEF 380

Query: 319 LTTSLI-----------------------------------DMYTKCGNLDKALEVFHTV 343
             TSLI                                   DMY KCG  D ++++F  +
Sbjct: 381 TFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEI 440

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           ++ D   W+T++  F+ +G GR A++ F+ M    +KPNAVTF N+L  CSH+G+V++G 
Sbjct: 441 ENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGL 500

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +F+ ME +YGVVP  +HY+C++D+LGRAG L EA +FI  MP  P    W + LGACKI
Sbjct: 501 NYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKI 560

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H ++E A++A   L++LEPEN GA VLLSNIYAK  +W++V  LRK ++   + K PG S
Sbjct: 561 HGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYS 620

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            +++  + H F   + SHP  KEIY KLD ++ ++K  GYVP    +L +  +++++E+ 
Sbjct: 621 WVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVL-IDMDDNLKEKL 679

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L+ HSER+A+A+ L++     PI + KNLRVC DCH+  K ISK+  R I++RD  RFHH
Sbjct: 680 LHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHH 739

Query: 644 FRGGNCSCMDYW 655
           F  G+CSC DYW
Sbjct: 740 FSNGSCSCGDYW 751



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 42/277 (15%)

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
           E I SF     L  +     +  T   +I+  AR  +   G+ +H M+I+     + F+S
Sbjct: 54  EEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLS 113

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           N  ++ Y+ CG+L     +F  + ++++VSW S+I+GF     F++A+  + +M +E   
Sbjct: 114 NHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEI 173

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
             +  + +VL AC                                            LGA
Sbjct: 174 ATQFALSSVLQAC------------------------------------------TSLGA 191

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +  G Q+H  + K G     ++ ++L DMY+KCG L  A + F  +  +D  +W++MI G
Sbjct: 192 IQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDG 251

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           F   G  ++AL  + +M    V  +     + L ACS
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D  T   ++   A+   ++ G Q+HA + + G   N +L+   +++Y+KCG LD  +++
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  R++  W+++I GFA     +EAL  F +M+           ++VL AC+  G +
Sbjct: 133 FDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI 192

Query: 400 DEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             G ++    ++  +G    V   + + DM  + G L +A +  E+MP    A +W +++
Sbjct: 193 QFGTQVHCLVVKCGFGCELFVG--SNLTDMYSKCGELSDACKAFEEMP-CKDAVLWTSMI 249


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/616 (36%), Positives = 338/616 (54%), Gaps = 43/616 (6%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI-P 99
           +  +++ C ++K+L++IH+ ++  GL   P   + L   CA+    SL +A+ +FD    
Sbjct: 8   IVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDS 67

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P+   WN LIR +S+S+ P+ S + + +++ +S   P+ FTF F +K+  R+       
Sbjct: 68  DPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG VI+S F DD  ++ SL+  Y+  G + +A  VF  +  +D+VSWN MI  F   G
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A+ +Y+                              R  NE             V 
Sbjct: 188 LHNQALSMYK------------------------------RMGNEG------------VC 205

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D +T V++LS+CA + A+++GV +H        +   +++ +LIDMY KCG+L+ A+ V
Sbjct: 206 GDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGV 265

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F+ ++ RDV  W++MI G+ ++G G EA+  F +M  + V+PNA+TF  +L  CSH GLV
Sbjct: 266 FNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLV 325

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG   F  M   + + P VKHY CMVD+ GRAG L+ ++E I          +W  LLG
Sbjct: 326 KEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLG 385

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +CKIH N+EL E A   L++LE  N G  VL+++IY+        + +RK +R   L+  
Sbjct: 386 SCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTV 445

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S IE+  ++HKF+  +  HP    IYS+L E++ R    GY P  S+       +  
Sbjct: 446 PGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRC 505

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
              A   HSE+LAIAYGL+       +RI KNLRVC DCH+  K +SK +NREI++RDR 
Sbjct: 506 LGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRV 565

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF  G CSC DYW
Sbjct: 566 RFHHFADGICSCNDYW 581


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/604 (36%), Positives = 346/604 (57%), Gaps = 13/604 (2%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           + ++++H ++L+ GL   P + + L +  A      L  AR  FD  P+ +L+ ++ L+ 
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCL--LPDARRAFDDAPRRDLHLYSALLA 75

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
           A S S++P     +  +++ +    P+ F    +  AA RL   R+G+ +H     S + 
Sbjct: 76  AVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYS 135

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D  + +SLI  Y  CG    A  VF  IG K+ V W ++ISG+   G   +A++L++ M
Sbjct: 136 ADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSM 195

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
               +     T  A++S   K  +         A+ +F E++       D F   +V+  
Sbjct: 196 PAHGL----FTWTALISGFVKAGNY------TGAMGLFVEMRRDDIRIHDAFVLATVIGG 245

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
            A L A+ +G Q+H  + + G   +  +  +L+DMY+KC ++  A EVF  +  RDV  W
Sbjct: 246 AADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISW 305

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +T++ G A +G   E   L++RM  A +KPN VTF  ++ ACSH+GLV +GR  F+ M+ 
Sbjct: 306 TTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKR 365

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            YG+ PGV+HYTC +D+L R+G L EA + I  MP  P  + WGALL ACK H + ++  
Sbjct: 366 EYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCL 425

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
               +LLEL P++    +LLSN+YA   KWD+V+++RK M    ++K PG S +E   E 
Sbjct: 426 RVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRES 485

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
             F AGE    + +EI   L+E+V+ ++  GYVP+ S ++  +EE + +EQ L +HSERL
Sbjct: 486 RIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHE-KEQHLFVHSERL 544

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+A+G++   P   IR+VKNLRVCGDCHTV K IS +  R+I++RD  RFHHF  GNCSC
Sbjct: 545 AVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSC 604

Query: 652 MDYW 655
            ++W
Sbjct: 605 SEFW 608


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 334/616 (54%), Gaps = 49/616 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C         +QIH  M++     D Y    L    A   F  L+ AR++FD + 
Sbjct: 308 SILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF--LDDARKVFDWMF 365

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +L   N LI   S      ++  +F +L        N  T   V+K+ A L      +
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYEL-RKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H + +K  F  D  + N LI  Y  C  L+ A  VF      D+++  SMI+   Q  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E AI+L+ EM                                          L K + 
Sbjct: 485 HGEGAIKLFMEM------------------------------------------LRKGLE 502

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD F   S+L+ACA L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F ++  R V  WS MI G A +G G+ AL+LF RM +  + PN +T T+VLCAC+H+GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DE + +FN M+ ++G+    +HY+CM+D+LGRAG LD+A+E +  MP    AS+WGALLG
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           A ++H++ EL + A   L  LEPE  G  VLL+N YA  G W+ V+++RK M+ S +KKE
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P  S IEV  ++H F+ G+ SHP+ KEIY+KL E+   +   G+VPN    L  ++  + 
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSE- 801

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L+ HSERLA+A+ L+S  P  PIR+ KNLR+C DCH   K ISK+ +REI++RD  
Sbjct: 802 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 861

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHFR G CSC DYW
Sbjct: 862 RFHHFRDGTCSCGDYW 877



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 164/359 (45%), Gaps = 54/359 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +FD+IP P   +W++L+ AYS++  P  +   F  +        NEF  P V+K   
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC-- 112

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWN 209
            +   R+G  +H M + + F  D+F++N+L+  Y   G +  A  VF     +++ VSWN
Sbjct: 113 -VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWN 171

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
            ++S +V+      AI+++ EM    ++P E     V++AC   R++E GR         
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR--------- 222

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                                            Q+HA + + G   + +   +L+DMY K
Sbjct: 223 ---------------------------------QVHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G +D A  +F  +   DV  W+ +I+G  + G    A++L  +M+ + + PN  T +++
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 390 LCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           L ACS +G  D GR    F  +         GV     +VDM  +   LD+A +  + M
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG----LVDMYAKNHFLDDARKVFDWM 364


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 341/601 (56%), Gaps = 47/601 (7%)

Query: 56   QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
            Q+H   ++ G+  D + ++ L    + G    ++ A  +       +L +WN ++  Y  
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKG--GKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 116  SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
            S +  ++   F  L++      +E T    IKA+  L+  + G+ I    IK  F +DL+
Sbjct: 1077 SNKSRKALEHF-SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLW 1135

Query: 176  ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
            +S+ ++  Y  CGD+                                 A+EL+ E+    
Sbjct: 1136 VSSGVLDMYIKCGDMP-------------------------------NALELFGEIS--- 1161

Query: 236  VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
             +PDEV    ++S   +  D       + ALS++H +++S  V PDE+TF +++ A + L
Sbjct: 1162 -RPDEVAWTTMISGYIENGD------EDHALSVYHLMRVS-GVQPDEYTFATLIKASSCL 1213

Query: 296  GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
             A++ G QIHA + K    L+ ++ TSL+DMY KCG++  A  VF  +  R V  W+ M+
Sbjct: 1214 TALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 356  AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
             G A +G   EAL+LF  MQ   ++P+ VTF  VL ACSHSGL  E   +F+ M   YG+
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 416  VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
             P ++HY+C+VD LGRAG + EA   I  MP    AS++ ALLGAC+   + E A+    
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 476  HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
             LL L+P +  A VLLSNIYA + +WD+V++ R  M++  +KK+PG S I+V  ++H F+
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 536  AGESSHPLCKEIYSKLDEIVARLKSFG-YVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
              + SHP    IY K+++++ R++  G YVP+    L  VEEE+ +E+AL  HSE+LAIA
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE-KERALYYHSEKLAIA 1512

Query: 595  YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
            +GLIS  PS  IR++KNLRVCGDCH+  K ISKL  REI+LRD  RFHHFR G CSC DY
Sbjct: 1513 FGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDY 1572

Query: 655  W 655
            W
Sbjct: 1573 W 1573



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 196/453 (43%), Gaps = 51/453 (11%)

Query: 50   NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
            ++K  K+ H +++ +G   D Y  + L T        SL  AR++FD+    +L TWN++
Sbjct: 626  DLKLGKRAHARIVTSGDLPDRYLTNNLIT--MYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 110  IRAYSSSAEP-----IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            + AY+  A+      ++ F +F  L+    +     T   ++K        +V + +HG 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 165  VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
             +K  FE DLF+S +L++ Y   G +  A  +F  + ++D V WN M+  +V+  F ++A
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 225  IELYREMEMENVKPDEVTMVAVLSAC------AKKRDLEFGR-----------------W 261
            +  +         PD   +  V+          +KR  E  +                 W
Sbjct: 803  LRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAW 862

Query: 262  PNEALSIFHELQ-----------LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
              +     H  Q           L   +  D  T V +LSA      +D+G QIHA + K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 311  QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
                    ++ SL++MY+K G +  A + F      D+  W+TMI+ +A      EA+  
Sbjct: 923  SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 371  FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF-FNQMEPVYGVVPGVKH----YTCM 425
            F  +    +KP+  T  +VL ACS     DEG  F       VY +  G+ +     T +
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 426  VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            +D+  + G +DEA EF+         + W A++
Sbjct: 1040 IDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 56/387 (14%)

Query: 91   AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
            A + F   P+ +L +WNT+I +Y+ +   +++   F  L+ +    P++FT   V++A +
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACS 1006

Query: 151  RLVQ---FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
               +   F +G  +H   IK    +D F+S +LI  Y+  G +  A   F++ GK D  +
Sbjct: 1007 TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE--FLLHGKYDFDL 1064

Query: 206  VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
             SWN+++ G+++     KA+E +                                     
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHF------------------------------------- 1087

Query: 266  LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
             S+ HE+     +  DE T  + + A   L  +  G QI A   K G   + ++++ ++D
Sbjct: 1088 -SLMHEM----GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLD 1142

Query: 326  MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
            MY KCG++  ALE+F  +   D   W+TMI+G+   G    AL ++  M+ + V+P+  T
Sbjct: 1143 MYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYT 1202

Query: 386  FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVDMLGRAGLLDEAVEFIE 443
            F  ++ A S    +++G+        V  +   + H+  T +VDM  + G + +A     
Sbjct: 1203 FATLIKASSCLTALEQGKQIHAN---VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFR 1259

Query: 444  KMPIVPGASVWGALLGACKIHENVELA 470
            KM  V     W A+L     H +V+ A
Sbjct: 1260 KMD-VRKVVFWNAMLLGLAQHGHVDEA 1285



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 50   NIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
            N+KQ KQI    ++ G   D + +S    ++  C       +  A E+F +I +P+   W
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCG-----DMPNALELFGEISRPDEVAW 1168

Query: 107  NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
             T+I  Y  + +   +  ++  L+  S   P+E+TF  +IKA++ L     G+ IH  V+
Sbjct: 1169 TTMISGYIENGDEDHALSVY-HLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 167  KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
            K  +  D F+  SL+  Y  CG +  AY VF  +  + VV WN+M+ G  Q G  ++A+ 
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALN 1287

Query: 227  LYREMEMENVKPDEVTMVAVLSACA 251
            L+R M+   ++PD+VT + VLSAC+
Sbjct: 1288 LFRTMQSNGIQPDKVTFIGVLSACS 1312



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 40/303 (13%)

Query: 90   YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            YA +MF      N++ WN  +  +  + + + +   F  L+  S    +  T   ++ AA
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL-RSTIGHDSVTLVIILSAA 904

Query: 150  ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
                   +G+ IH +VIKSSF   + +SNSL++ Y+  G +  A   F+   + D++SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 210  SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
            +MIS + Q     +AI  +R++  + +KPD+ T+ +VL AC+   + E+           
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEY----------- 1013

Query: 270  HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                         FT               +G Q+H    K GI  + +++T+LID+Y+K
Sbjct: 1014 -------------FT---------------LGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 330  CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
             G +D+A  + H     D+  W+ ++ G+      R+AL+ FS M E  +  + +T    
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATA 1105

Query: 390  LCA 392
            + A
Sbjct: 1106 IKA 1108



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 53/301 (17%)

Query: 99  PQPNLYTWNTLIRAY------SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           PQP L     L+RA+      SS       F++F +    S      F+   ++++A  +
Sbjct: 568 PQPGLLRVKMLLRAHLKVPSISSRTSFACPFLLFCRFSSLSSSSSQWFS---LLRSAIAM 624

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              ++G+  H  ++ S    D +++N+LI  Y+ CG L  A  VF     +D+V+WNS++
Sbjct: 625 ADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 213 SGFVQ--GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           + + Q     +E  +E +R             +  +L         EFG       SI  
Sbjct: 685 AAYAQFADSSYENVLEGFR-------------LFGLLR--------EFG------FSI-- 715

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                        T   +L  C   G + +   +H    K G +L+ +++ +L+++Y K 
Sbjct: 716 ----------TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKY 765

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G + +A  +F  +  RD  +W+ M+  +       EAL  FS    +   P+   F+N+ 
Sbjct: 766 GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD---FSNLH 822

Query: 391 C 391
           C
Sbjct: 823 C 823



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +  + +G + HA++   G   + YLT +LI MY+KCG+L  A +VF     RD+  W+++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 355 IAGFAMYGCGR-----EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +A +A +         E   LF  ++E       +T   +L  C  SG       F    
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSG-------FVQVS 736

Query: 410 EPVYGVVPGVKH------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           E V+G    +           +V++  + GL+ +A    +KMP    A +W  +L A
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 340/569 (59%), Gaps = 17/569 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+ + +       WN +I  Y       ++F + L+ +++     +E+T+  VI AA+
Sbjct: 227 ARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDL-LRRMHSLGIQLDEYTYTSVISAAS 285

Query: 151 RLVQFRVGQAIHGMVIKSSFEDD----LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
               F +G+ +H  V+++  +      L ++N+LI  Y  CG L  A  VF  +  KD+V
Sbjct: 286 NAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLV 345

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+++SG V     E+A  ++REM + ++    +T   ++S  A+     FG    E L
Sbjct: 346 SWNAILSGCVNARRIEEANSIFREMPVRSL----LTWTVMISGLAQN---GFGE---EGL 395

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F++++L + + P ++ +   +++C+ LG++D G Q+H+++ + G   +  +  +LI M
Sbjct: 396 KLFNQMKL-EGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITM 454

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y++CG ++ A  VF T+   D   W+ MIA  A +G G +A+ L+ +M +  + P+ +TF
Sbjct: 455 YSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITF 514

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +L ACSH+GLV EGR +F+ M   YG+ P   HY+ ++D+L RAG+  EA    E MP
Sbjct: 515 LTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP 574

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             PGA +W ALL  C IH N+EL   A   LLEL P+  G  + LSN+YA  G+WD V+ 
Sbjct: 575 FEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVAR 634

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK MR  G+KKEPGCS IEV   +H FL  ++ HP    +Y  L+++V  ++  GYVP+
Sbjct: 635 VRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPD 694

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  +E E  +E AL+ HSE+LA+ YG++ +     IR+ KNLR+CGDCH   K IS
Sbjct: 695 TKFVLHDMESEQ-KEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 753

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+ +REI++RDR RFHHFR G CSC +YW
Sbjct: 754 KVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 175/416 (42%), Gaps = 63/416 (15%)

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           A+L      +A+H  ++ S F+    I N LI  Y    ++  A  +F  I K D+V+  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +M+S +   G  + A +L+    M     D V+  A+++A +   D       + AL +F
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMS--IRDTVSYNAMITAFSHSHD------GHAALQLF 118

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV-QIHAKMKKQG---------IKLNCYL 319
            +++    V PD FTF SVL A + +   +    Q+H ++ K G           ++CY+
Sbjct: 119 VQMKRLGFV-PDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYV 177

Query: 320 T---------------------------------TSLIDMYTKCGNLDKALEVFHTVKSR 346
           +                                 T++I  Y +  +L  A E+   +   
Sbjct: 178 SCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDH 237

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
               W+ MI+G+   G   EA DL  RM    ++ +  T+T+V+ A S++GL + GR   
Sbjct: 238 IAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVH 297

Query: 407 NQMEPVYGVVPGVKHYT-----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
             +  +  VV    H+       ++ +  R G L EA    +KMP+    S W A+L  C
Sbjct: 298 AYV--LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGC 354

Query: 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
               N    E A S   E+   +     ++ +  A+ G  +   +L   M++ GL+
Sbjct: 355 V---NARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLE 407


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 341/601 (56%), Gaps = 47/601 (7%)

Query: 56   QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
            Q+H   ++ G+  D + ++ L    + G    ++ A  +       +L +WN ++  Y  
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKG--GKMDEAEFLLHGKYDFDLASWNAIMFGYIK 1076

Query: 116  SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
            S +  ++   F  L++      +E T    IKA+  L+  + G+ I    IK  F +DL+
Sbjct: 1077 SNKSRKALEHF-SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLW 1135

Query: 176  ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
            +S+ ++  Y  CGD+                                 A+EL+ E+    
Sbjct: 1136 VSSGVLDMYIKCGDMP-------------------------------NALELFGEIS--- 1161

Query: 236  VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
             +PDEV    ++S   +  D       + ALS++H +++S  V PDE+TF +++ A + L
Sbjct: 1162 -RPDEVAWTTMISGYIENGD------EDHALSVYHLMRVS-GVQPDEYTFATLIKASSCL 1213

Query: 296  GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
             A++ G QIHA + K    L+ ++ TSL+DMY KCG++  A  VF  +  R V  W+ M+
Sbjct: 1214 TALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 356  AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
             G A +G   EAL+LF  MQ   ++P+ VTF  VL ACSHSGL  E   +F+ M   YG+
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 416  VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACS 475
             P ++HY+C+VD LGRAG + EA   I  MP    AS++ ALLGAC+   + E A+    
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 476  HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFL 535
             LL L+P +  A VLLSNIYA + +WD+V++ R  M++  +KK+PG S I+V  ++H F+
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 536  AGESSHPLCKEIYSKLDEIVARLKSFG-YVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
              + SHP    IY K+++++ R++  G YVP+    L  VEEE+ +E+AL  HSE+LAIA
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE-KERALYYHSEKLAIA 1512

Query: 595  YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
            +GLIS  PS  IR++KNLRVCGDCH+  K ISKL  REI+LRD  RFHHFR G CSC DY
Sbjct: 1513 FGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDY 1572

Query: 655  W 655
            W
Sbjct: 1573 W 1573



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 196/453 (43%), Gaps = 51/453 (11%)

Query: 50   NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
            ++K  K+ H +++ +G   D Y  + L T        SL  AR++FD+    +L TWN++
Sbjct: 626  DLKLGKRAHARIVTSGDLPDRYLTNNLIT--MYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 110  IRAYSSSAEP-----IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            + AY+  A+      ++ F +F  L+    +     T   ++K        +V + +HG 
Sbjct: 684  LAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY 742

Query: 165  VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
             +K  FE DLF+S +L++ Y   G +  A  +F  + ++D V WN M+  +V+  F ++A
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 225  IELYREMEMENVKPDEVTMVAVLSAC------AKKRDLEFGR-----------------W 261
            +  +         PD   +  V+          +KR  E  +                 W
Sbjct: 803  LRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAW 862

Query: 262  PNEALSIFHELQ-----------LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
              +     H  Q           L   +  D  T V +LSA      +D+G QIHA + K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 311  QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
                    ++ SL++MY+K G +  A + F      D+  W+TMI+ +A      EA+  
Sbjct: 923  SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 371  FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF-FNQMEPVYGVVPGVKH----YTCM 425
            F  +    +KP+  T  +VL ACS     DEG  F       VY +  G+ +     T +
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 426  VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            +D+  + G +DEA EF+         + W A++
Sbjct: 1040 IDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 56/387 (14%)

Query: 91   AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
            A + F   P+ +L +WNT+I +Y+ +   +++   F  L+ +    P++FT   V++A +
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACS 1006

Query: 151  RLVQ---FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
               +   F +G  +H   IK    +D F+S +LI  Y+  G +  A   F++ GK D  +
Sbjct: 1007 TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE--FLLHGKYDFDL 1064

Query: 206  VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
             SWN+++ G+++     KA+E +                                     
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHF------------------------------------- 1087

Query: 266  LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
             S+ HE+     +  DE T  + + A   L  +  G QI A   K G   + ++++ ++D
Sbjct: 1088 -SLMHEM----GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLD 1142

Query: 326  MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
            MY KCG++  ALE+F  +   D   W+TMI+G+   G    AL ++  M+ + V+P+  T
Sbjct: 1143 MYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYT 1202

Query: 386  FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY--TCMVDMLGRAGLLDEAVEFIE 443
            F  ++ A S    +++G+        V  +   + H+  T +VDM  + G + +A     
Sbjct: 1203 FATLIKASSCLTALEQGKQIHAN---VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFR 1259

Query: 444  KMPIVPGASVWGALLGACKIHENVELA 470
            KM  V     W A+L     H +V+ A
Sbjct: 1260 KMD-VRKVVFWNAMLLGLAQHGHVDEA 1285



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 50   NIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
            N+KQ KQI    ++ G   D + +S    ++  C       +  A E+F +I +P+   W
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCG-----DMPNALELFGEISRPDEVAW 1168

Query: 107  NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
             T+I  Y  + +   +  ++  L+  S   P+E+TF  +IKA++ L     G+ IH  V+
Sbjct: 1169 TTMISGYIENGDEDHALSVY-HLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 167  KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
            K  +  D F+  SL+  Y  CG +  AY VF  +  + VV WN+M+ G  Q G  ++A+ 
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALN 1287

Query: 227  LYREMEMENVKPDEVTMVAVLSACA 251
            L+R M+   ++PD+VT + VLSAC+
Sbjct: 1288 LFRTMQSNGIQPDKVTFIGVLSACS 1312



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 40/303 (13%)

Query: 90   YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            YA +MF      N++ WN  +  +  + + + +   F  L+  S    +  T   ++ AA
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL-RSTIGHDSVTLVIILSAA 904

Query: 150  ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
                   +G+ IH +VIKSSF   + +SNSL++ Y+  G +  A   F+   + D++SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 210  SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
            +MIS + Q     +AI  +R++  + +KPD+ T+ +VL AC+   + E+           
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEY----------- 1013

Query: 270  HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                         FT               +G Q+H    K GI  + +++T+LID+Y+K
Sbjct: 1014 -------------FT---------------LGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 330  CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
             G +D+A  + H     D+  W+ ++ G+      R+AL+ FS M E  +  + +T    
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATA 1105

Query: 390  LCA 392
            + A
Sbjct: 1106 IKA 1108



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 53/301 (17%)

Query: 99  PQPNLYTWNTLIRAY------SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           PQP L     L+RA+      SS       F++F +    S      F+   ++++A  +
Sbjct: 568 PQPGLLRVKMLLRAHLKVPSISSRTSFACPFLLFCRFSSLSSSSSQWFS---LLRSAIAM 624

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              ++G+  H  ++ S    D +++N+LI  Y+ CG L  A  VF     +D+V+WNS++
Sbjct: 625 ADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 213 SGFVQ--GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           + + Q     +E  +E +R             +  +L         EFG       SI  
Sbjct: 685 AAYAQFADSSYENVLEGFR-------------LFGLLR--------EFG------FSI-- 715

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                        T   +L  C   G + +   +H    K G +L+ +++ +L+++Y K 
Sbjct: 716 ----------TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKY 765

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G + +A  +F  +  RD  +W+ M+  +       EAL  FS    +   P+   F+N+ 
Sbjct: 766 GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD---FSNLH 822

Query: 391 C 391
           C
Sbjct: 823 C 823



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +  + +G + HA++   G   + YLT +LI MY+KCG+L  A +VF     RD+  W+++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 355 IAGFAMYGCGR-----EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +A +A +         E   LF  ++E       +T   +L  C  SG       F    
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSG-------FVQVS 736

Query: 410 EPVYGVVPGVKH------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           E V+G    +           +V++  + GL+ +A    +KMP    A +W  +L A
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/693 (35%), Positives = 372/693 (53%), Gaps = 77/693 (11%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG---LFFDPYSASKLFTP 79
           PNP T T           V S +     +   +++H Q ++ G     F   S   +++ 
Sbjct: 199 PNPFTFT----------SVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSK 248

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C L     +E A+ +F Q+   ++ +WNTL+     +   +++  +F     +     ++
Sbjct: 249 CGL-----VEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKL-SQ 302

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T+  VIK  A L Q  + + +H  V+K  F  D  +  +++  Y+ CG+L  A+ +F++
Sbjct: 303 STYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLL 362

Query: 200 I-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC-------- 250
           + G ++VVSW +MI G +Q      A  L+  M  +NVKP+E T   VL+A         
Sbjct: 363 MPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQI 422

Query: 251 -AKKRDLEFGRWPN----------------EALSIFHELQ----------LS-------- 275
            A+     +   P+                EALSIF  +           LS        
Sbjct: 423 HAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDC 482

Query: 276 ------------KNVNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                       + + P+EFT  S + ACA     +D G Q HA   K   +    + ++
Sbjct: 483 DGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSA 542

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+ MY + G++D A  VF     RD+  W++MI+G+A +G  +EALD F +M+   ++ +
Sbjct: 543 LVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMD 602

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
             TF  V+  C+H+GLV EG+ +F+ M   + + P ++HY+CMVD+  RAG LDE +  I
Sbjct: 603 GATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLI 662

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           E MP   GA VW  LLGAC++H+NVEL + A   LL LEP++    VLLSNIYA  G+W 
Sbjct: 663 EGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWK 722

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
              E+RK M    +KKE GCS I++  ++H F+A + SHPL ++IY+KL  +  RLK  G
Sbjct: 723 ERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEG 782

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y PN S +L  + EE  +E  L +HSERLA+A+GLI+  P  P++IVKNLRVCGDCH V 
Sbjct: 783 YCPNTSVVLHDIAEEQ-KETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVM 841

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K++S + +REI++RD  RFHHF  G CSC D+W
Sbjct: 842 KMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 184/418 (44%), Gaps = 67/418 (16%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E  R +F+ +P+ N+ TW +L+  Y           +F ++     + PN FTF  V+ 
Sbjct: 151 VEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW-PNPFTFTSVLS 209

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A      +G+ +H   +K      +F+ NSLI+ Y+ CG +  A  VF  +  +D+VS
Sbjct: 210 AVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVS 269

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------ 261
           WN++++G +      +A++L+ +      K  + T   V+  CA  + L   R       
Sbjct: 270 WNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVL 329

Query: 262 -----------------------PNEALSIFHELQLSKN--------------------- 277
                                   ++A +IF  +  S+N                     
Sbjct: 330 KHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAA 389

Query: 278 ----------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                     V P+EFT+ +VL+A   +    +  QIHA++ K   +    + T+L+  Y
Sbjct: 390 ALFSRMREDNVKPNEFTYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASY 445

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +K GN ++AL +F  +  +DV  WS M++ ++  G    A ++F +M    +KPN  T +
Sbjct: 446 SKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTIS 505

Query: 388 NVLCAC-SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           + + AC S +  +D+GR  F+ +   Y     +   + +V M  R G +D A    E+
Sbjct: 506 SAIDACASPTAGIDQGRQ-FHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFER 562



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 155/330 (46%), Gaps = 45/330 (13%)

Query: 152 LVQFRV-GQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           L+  RV G+ +H + +K  F+  ++ +  +L+  Y  CG +     VF  + K++VV+W 
Sbjct: 111 LIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWT 170

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           S+++G+VQG      + L+  M  E V                        WPN      
Sbjct: 171 SLLTGYVQGRACSDVMALFFRMRAEGV------------------------WPNP----- 201

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                        FTF SVLSA A  GA+D+G ++HA+  K G +   ++  SLI+MY+K
Sbjct: 202 -------------FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSK 248

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG +++A  VF  +++RD+  W+T++AG  +     EAL LF   + +  K +  T++ V
Sbjct: 249 CGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTV 308

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           +  C++   +   R   + +   +G        T ++D   + G LD+A      MP   
Sbjct: 309 IKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQ 367

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLE 479
               W A++G C  + ++ LA    S + E
Sbjct: 368 NVVSWTAMIGGCIQNADIPLAAALFSRMRE 397


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 330/581 (56%), Gaps = 85/581 (14%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSP 134
           ++  CA     S++ +R++F+Q+P+ N+ +W  +I AY  S E   ++  +F +++  S 
Sbjct: 1   MYAKCAAD--GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV 58

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
                                                    + NSLI  YA  G +  A 
Sbjct: 59  NC---------------------------------------VGNSLISMYARSGRMEDAR 79

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
             F ++ +K++VS+N+++ G+ +                 N+K +E              
Sbjct: 80  KAFDILFEKNLVSYNAIVDGYAK-----------------NLKSEE-------------- 108

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                     A  +F+E+     +    FTF S+LS  A +GAM  G QIH ++ K G K
Sbjct: 109 ----------AFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 157

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
            N  +  +LI MY++CGN++ A +VF+ ++ R+V  W++MI GFA +G    AL++F +M
Sbjct: 158 SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM 217

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
            E   KPN +T+  VL ACSH G++ EG+  FN M   +G+VP ++HY CMVD+LGR+GL
Sbjct: 218 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 277

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L EA+EFI  MP++  A VW  LLGAC++H N EL  +A   +LE EP++  A +LLSN+
Sbjct: 278 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 337

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           +A  G+W +V ++RK M+   L KE GCS IEV   +H+F  GE+SHP   +IY +LD++
Sbjct: 338 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQL 397

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
            +++K  GY+P+   +L  +EEE  +EQ L  HSE++A+A+GLIS   S+PIRI KNLRV
Sbjct: 398 ASKIKEMGYIPDTDFVLHDIEEEQ-KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRV 456

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CGDCHT  K IS    REI++RD  RFHH + G CSC DYW
Sbjct: 457 CGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 339/571 (59%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A   F+Q+ + ++ TWN++I  Y+     +++  +F +++ +S   P+ FT   V+ 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
           A A L +  +G+ IH  ++ + F+    + N+LI  Y+ CG +  A  +    G KD  +
Sbjct: 288 ACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
             + +++ G+++ G   +A  ++     +++K  +V     +    ++  L +G    EA
Sbjct: 348 EGFTALLDGYIKLGDMNEAKNIF-----DSLKDRDVVAWTAMIVGYEQHGL-YG----EA 397

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           +++F  + + +   P+ +T  ++LS  + L ++  G QIH    K G   +  ++ +LI 
Sbjct: 398 INLFRSM-VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALIT 456

Query: 326 MYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY K G++  A   F  ++  RD   W++MI   A +G   EAL+LF  M    ++P+ +
Sbjct: 457 MYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  V  AC+H+GLV++GR +F+ M+ V  ++P + HY CMVD+ GRAGLL EA EFIEK
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEK 576

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MPI P    WG+LL AC++++N++L + A   LL LEPEN GA   L+N+Y+  GKW+  
Sbjct: 577 MPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA 636

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +++RK M+   +KKE G S IEV  ++H F   +  HP   EIY  + +I   +K  GYV
Sbjct: 637 AKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYV 696

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +L  +EEE V+EQ L  HSE+LAIA+GLIS      +RI+KNLRVC DCHT  K 
Sbjct: 697 PDTASVLHDLEEE-VKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKF 755

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISKL  REI++RD  RFHHF+ G CSC DYW
Sbjct: 756 ISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 222/506 (43%), Gaps = 85/506 (16%)

Query: 38  PHPVFSLIKQCKNIKQ-----------LKQIHTQMLRTGLFFDPY--------------- 71
           P  + +L++ C N+ Q            + +H +++++GL F  Y               
Sbjct: 6   PLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYA 65

Query: 72  -SASKLFTPCALGTFSSLE-----YAR--------EMFDQIPQPNLYTWNTLIRAYSSSA 117
             A KLF    L T  S       YA+        E FD++PQ +  +W T+I  Y +  
Sbjct: 66  LHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIG 125

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
           +  ++  I  +++      P++FT   V+ + A       G+ +H  ++K     ++ +S
Sbjct: 126 QYHKAIRIMGEMMREGIE-PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVS 184

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           NSL++ YA CGD  MA  VF  +  KD+ SWN+MI+  +Q G  + A+  + +M     +
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQM----AE 240

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            D VT  +++S   ++       +   AL +F ++     ++PD FT  SVLSACA L  
Sbjct: 241 RDIVTWNSMISGYNQR------GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK 294

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC--------------------------- 330
           + IG QIH+ +   G  ++  +  +LI MY++C                           
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 331 ------GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
                 G++++A  +F ++K RDV  W+ MI G+  +G   EA++LF  M   + +PN+ 
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   +L   S    +  G+          G +  V     ++ M  +AG +  A    + 
Sbjct: 415 TLAAMLSVASSLASLGHGKQIHGSAVK-SGEIYSVSVSNALITMYAKAGSITSASRAFDL 473

Query: 445 MPIVPGASVWGALLGACKIHENVELA 470
           +        W +++ A   H + E A
Sbjct: 474 IRCERDTVSWTSMIIALAQHGHAEEA 499


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 329/581 (56%), Gaps = 50/581 (8%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           L++ C       +E AR +FD + +P+L  +N LI  YS +     S  +F +L+     
Sbjct: 256 LYSKCG-----DVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELM-TLGL 309

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
           +PN  T   +I   +      + Q +HG V+KS F  +  +S ++   +    D+  A  
Sbjct: 310 WPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARK 369

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
            F  + +K + SWN+MISG+ Q G  E A+ L+ +M                        
Sbjct: 370 AFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQM------------------------ 405

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                             +  NV P+  T  S LSACAQLGA+ +G  +H  + ++ ++ 
Sbjct: 406 ------------------VKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEP 447

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N Y+ T+LIDMY KCG++ +A  +F+T+ +++V  W+ MIAG+ ++G G EAL L+  M 
Sbjct: 448 NVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDML 507

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           +A + P + TF +VL ACSH GLV+EG   F  M   Y + PG++H TCMVD+LGRAG L
Sbjct: 508 DAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQL 567

Query: 436 DEAVEFIEKMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
            EA E I + P    G  VWGALLGAC +H++ +LA+ A   L EL+PEN G  VLLSN+
Sbjct: 568 KEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNL 627

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           +    ++   + +R+  +   L K PG + IE+  + H F+AG+ +HP  + IYS L+++
Sbjct: 628 HTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKL 687

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
            A++   GY P     L  VEEE+ +E  + +HSE+LAIA+GL+S EP   IRI+KNLRV
Sbjct: 688 TAKMIEAGYRPETEAALYDVEEEE-KEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRV 746

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH   K ISK+  R I++RD  RFHHFR G CSC DYW
Sbjct: 747 CLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 21/270 (7%)

Query: 12  LSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFD-P 70
           L T +++L   PN +TL V     H P     L+ QC        +H  +L++G   + P
Sbjct: 300 LFTELMTLGLWPNSSTL-VALIPVHSPFG-HDLLAQC--------LHGFVLKSGFTANSP 349

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
            S +     C L   + +E AR+ FD +P+  + +WN +I  Y+ +     +  +F Q+V
Sbjct: 350 VSTAITTLHCRL---NDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMV 406

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
             +   PN  T    + A A+L    +G+ +H ++ +   E ++++  +LI  YA CG +
Sbjct: 407 KLN-VRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSI 465

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           + A  +F  +  K+VVSWN+MI+G+   G   +A++LY++M   ++ P   T ++VL AC
Sbjct: 466 SEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYAC 525

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           +       G    E   +F  +     +NP
Sbjct: 526 SH------GGLVEEGWKVFRSMTDDYAINP 549


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 334/616 (54%), Gaps = 49/616 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C         +QIH  M++     D Y    L    A   F  L+ AR++FD + 
Sbjct: 308 SILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF--LDDARKVFDWMF 365

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +L   N LI   S      ++  +F +L        N  T   V+K+ A L      +
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYEL-RKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H + +K  F  D  + N LI  Y  C  L+ A  VF      D+++  SMI+   Q  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E AI+L+ EM                                          L K + 
Sbjct: 485 HGEGAIKLFMEM------------------------------------------LRKGLE 502

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD F   S+L+ACA L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELA 562

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F ++  R V  WS MI G A +G G+ AL+LF RM +  + PN +T T+VLCAC+H+GLV
Sbjct: 563 FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLV 622

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DE + +FN M+ ++G+    +HY+CM+D+LGRAG LD+A+E +  MP    AS+WGALLG
Sbjct: 623 DEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLG 682

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           A ++H++ EL + A   L  LEPE  G  VLL+N YA  G W+ V+++RK M+ S +KKE
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P  S IEV  ++H F+ G+ SHP+ KEIY+KL E+   +   G+VPN    L  ++  + 
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSE- 801

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E  L+ HSERLA+A+ L+S  P  PIR+ KNLR+C DCH   K ISK+ +REI++RD  
Sbjct: 802 KELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 861

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHFR G CSC DYW
Sbjct: 862 RFHHFRDGTCSCGDYW 877



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 54/359 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR  FD+IP P   +W++L+ AYS++  P  +   F  +        NEF  P V+K   
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKC-- 112

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWN 209
            +   R+G  +H M + + F  D+F++N+L+  Y   G +  A  VF     +++ VSWN
Sbjct: 113 -VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWN 171

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
            ++S +V+      AI+++ EM    ++P E     V++AC   R++E GR         
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGR--------- 222

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                                            Q+HA + + G   + +   +L+DMY K
Sbjct: 223 ---------------------------------QVHAMVVRMGYDKDVFTANALVDMYMK 249

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G +D A  +F  +   DV  W+ +I+G  + G    A++L  +M+ + + PN  T +++
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSI 309

Query: 390 LCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           L ACS +G  D GR    F  +         GV     +VDM  +   LD+A +  + M
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG----LVDMYAKNHFLDDARKVFDWM 364


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/579 (37%), Positives = 349/579 (60%), Gaps = 24/579 (4%)

Query: 80  CALGTF---SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
           C LG F     +  AR+ FD +   ++ +WNT+I  Y+ S +  ++  +F +    SP  
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SP-V 278

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
            + FT+  ++      +Q R+ +    +  K    +++   N+++  Y     + MA  +
Sbjct: 279 QDVFTWTAMVSG---YIQNRMVEEARELFDKMPERNEVSW-NAMLAGYVQGERMEMAKEL 334

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F ++  ++V +WN+MI+G+ Q G   +A  L+ +M     K D V+  A+++  ++    
Sbjct: 335 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGH- 389

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EAL +F +++  +    +  +F S LS CA + A+++G Q+H ++ K G +  
Sbjct: 390 -----SFEALRLFVQME-REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           C++  +L+ MY KCG++++A ++F  +  +D+  W+TMIAG++ +G G  AL  F  M+ 
Sbjct: 444 CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             +KP+  T   VL ACSH+GLVD+GR +F  M   YGV+P  +HY CMVD+LGRAGLL+
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A   ++ MP  P A++WG LLGA ++H N ELAE A   +  +EPEN G  VLLSN+YA
Sbjct: 564 DAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYA 623

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            +G+W +V +LR  MR  G+KK PG S IE+  + H F  G+  HP   EI++ L+E+  
Sbjct: 624 SSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDL 683

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           R+K  GYV   S +L  VEEE+ +E+ +  HSERLA+AYG++ V   +PIR++KNLRVC 
Sbjct: 684 RMKKAGYVSKTSVVLHDVEEEE-KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCE 742

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   K ++++  R I+LRD  RFHHF+ G+CSC DYW
Sbjct: 743 DCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           ++  WN  I +Y  +    ++  +F ++    P + +  ++  +I    R  +F + + +
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRM----PRWSS-VSYNGMISGYLRNGEFELARKL 117

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
                    E DL   N +I  Y    +L  A  +F ++ ++DV SWN+M+SG+ Q G  
Sbjct: 118 ----FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           + A  ++  M  +N    +V+  A+LSA  +   +E      EA  +F   +        
Sbjct: 174 DDARSVFDRMPEKN----DVSWNALLSAYVQNSKME------EACMLFKSRE-------- 215

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEVF 340
              +  V   C   G +     + A+     + +   ++  ++I  Y + G +D+A ++F
Sbjct: 216 --NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF 273

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
                +DVF W+ M++G+       EA +LF +M E     N V++  +L     +G V 
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAML-----AGYVQ 324

Query: 401 EGRMFFNQMEPVYGVVP--GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             RM     + ++ V+P   V  +  M+    + G + EA    +KMP     S W A++
Sbjct: 325 GERM--EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-WAAMI 381

Query: 459 GA 460
             
Sbjct: 382 AG 383



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 36/332 (10%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + D+   N  I  Y   G    A  VF  + +   VS+N MISG+++ G FE A +L+ E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M     + D V+   ++    + R+L   R   E   I  E         D  ++ ++LS
Sbjct: 121 MP----ERDLVSWNVMIKGYVRNRNLGKAR---ELFEIMPE--------RDVCSWNTMLS 165

Query: 291 ACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
             AQ G +D    +  +M +K  +  N     +L+  Y +   +++A  +F + ++  + 
Sbjct: 166 GYAQNGCVDDARSVFDRMPEKNDVSWN-----ALLSAYVQNSKMEEACMLFKSRENWALV 220

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+ ++ GF       EA   F  M    V    V++  ++   + SG +DE R  F++ 
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDV----VSWNTIITGYAQSGKIDEARQLFDE- 275

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
            PV  V      +T MV    +  +++EA E  +KMP     S W A+L      E +E+
Sbjct: 276 SPVQDVFT----WTAMVSGYIQNRMVEEARELFDKMPERNEVS-WNAMLAGYVQGERMEM 330

Query: 470 AEYACSHLLELEP-ENHGALVLLSNIYAKTGK 500
           A+     L ++ P  N      +   YA+ GK
Sbjct: 331 AK----ELFDVMPCRNVSTWNTMITGYAQCGK 358


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 372/633 (58%), Gaps = 39/633 (6%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           ++  + +  +ML+     D +S + L +  A     S++  +  FD++P  +  ++NT I
Sbjct: 74  LRDAQNLFDKMLKR----DXFSWNALLS--AYAKSGSIQNLKATFDRMPFRDSVSYNTTI 127

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             +S ++ P +S  +F ++     + P E+T   ++ A+A+L+  R G+ IHG +I  +F
Sbjct: 128 AGFSGNSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNF 186

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
             ++FI N+L   YA CG++  A  +F  + KK++VSWN MISG+ + G  EK I L  +
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246

Query: 231 MEMENVKPDEVTMVAVLSA---CA------------KKRDL-----------EFGRWPNE 264
           M +    PD+VTM  +++A   C             K++D+           + GR   +
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR-EED 305

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F+E+ L +++ PD +T  SV+S+CA+L ++  G  +H K    G+  N  ++++LI
Sbjct: 306 ALLLFNEMLL-EHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY+KCG +D A  VF+ + +R+V  W+ MI G A  G  ++AL+LF  M + K KP+ V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF  +L AC H   +++G+ +F+ +   +G+ P + HY CMV++LGR G +++AV  I+ 
Sbjct: 425 TFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKN 484

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P   +W  LL  C    ++  AE A  HL EL+P      ++LSN+YA  G+W +V
Sbjct: 485 MAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDV 544

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + +R  M+   +KK  G S IE++ E+H+F + + +HP  ++IY KL+ ++ +L+  G+ 
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFT 604

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPS--QPIRIVKNLRVCGDCHTVA 622
           PN + +L  V  ED + +++  HSE+LA+A+GLI  +P+   PIRI+KN+R+C DCH   
Sbjct: 605 PNTNLVLHDV-GEDEKFKSICFHSEKLALAFGLIK-KPNGISPIRIIKNIRICNDCHEFM 662

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K  S++  R+I+LRD  RFHHF  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 19/292 (6%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D F+ N L+H YA  G L  A  +F  + K+D  SWN+++S + + G  +     +  M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
             +      T+         +  LE          +F  +Q  +   P E+T VS+L+A 
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLE----------LFKRMQ-REGFEPTEYTIVSILNAS 165

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           AQL  +  G QIH  +  +    N ++  +L DMY KCG +++A  +F  +  +++  W+
Sbjct: 166 AQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWN 225

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            MI+G+A  G   + + L  +M+ +   P+ VT + ++ A    G VDE R  F++ +  
Sbjct: 226 LMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE- 284

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGAC 461
                 +  +T M+    + G  ++A+    +M    I P +    +++ +C
Sbjct: 285 ----KDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/573 (39%), Positives = 341/573 (59%), Gaps = 21/573 (3%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY----NSPYFPNEFTFPFV 145
           YA  +F  +  P+ +    L+R    +  P+++F +F  L      + P+ P  F F  +
Sbjct: 95  YAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLP--FAFSPL 152

Query: 146 IKAAARLVQFRVGQAIHGM-VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
            K+AA           H + ++   F+   F+ NSLI  Y  CGD+  A  V   +  KD
Sbjct: 153 AKSAAAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKD 212

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V+SW S+++ + +      A E++    ++    D V   A+++  A+         P +
Sbjct: 213 VISWTSIVAAYSRSRDMGSAEEVFALCPVK----DMVAWTAMVTGYAQNA------MPVK 262

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL  F ++     +  DE +    +SACAQLGA+   V I     + G+  N  + + L+
Sbjct: 263 ALEAFEQMA-GAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLV 321

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNA 383
           DMY KCG +D+A  VF  ++ ++V+ +S+MI G A +G   +A+ LF+ M + A V+PN 
Sbjct: 322 DMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNH 381

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           VTF  VL ACSH+G+V EGR +F QM+  YG++P   HYTCMVD+LGRAGL+ EA++ ++
Sbjct: 382 VTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVK 441

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            M + P   VWGALLGAC+IH N ++A+ A  HL +LEPE  G  VLLSN  A  G+WD 
Sbjct: 442 SMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDE 501

Query: 504 VSELRKHMRVSGLKKEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           VS++RK MR+ GLKK+P  SS E  +G +H+F AG+++HP   EI   L E+ ARLK  G
Sbjct: 502 VSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLAG 561

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           YVP  S ++  V +E+ +E+ L  HSE+LA+++GL+++E    IRIVKNLR+C DCH   
Sbjct: 562 YVPVLSSVVYNVSDEE-KERLLMGHSEKLALSFGLLTLESRSSIRIVKNLRICEDCHLFI 620

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +L+SK+   EI++RD  RFHHFR G CSC  +W
Sbjct: 621 RLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 323/568 (56%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++  R +F+ +P+ ++ ++NT+I  Y+ S    +  +  ++ +  +   P+ FT   V+ 
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSG-MYEDALRMVREMGTTDLKPDSFTLSSVLP 250

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             +  V    G+ IHG VI+   + D++I +SL+  YA    +  +  VF  +  +D +S
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WNS+++G+VQ G +                                         NEAL 
Sbjct: 311 WNSLVAGYVQNGRY-----------------------------------------NEALR 329

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F ++  +K V P    F SV+ ACA L  + +G Q+H  + + G   N ++ ++L+DMY
Sbjct: 330 LFRQMVTAK-VKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY 388

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCGN+  A ++F  +   D   W+ +I G A++G G EA+ LF  M+   VKPN V F 
Sbjct: 389 SKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFV 448

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSH GLVDE   +FN M  VYG+   ++HY  + D+LGRAG L+EA  FI KM +
Sbjct: 449 AVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCV 508

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P  SVW  LL +C +H+N+ELAE     +  ++ EN GA VL+ N+YA  G+W  +++L
Sbjct: 509 EPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKL 568

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  MR  GL+K+P CS IE+  + H F++G+ SHP   +I   L  ++ +++  GYV + 
Sbjct: 569 RLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADT 628

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +L  V+EE  +E     HSERLA+A+G+I+ EP   IR+ KN+R+C DCH   K ISK
Sbjct: 629 SGVLHDVDEEHKRELLFG-HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISK 687

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI++RD  RFHHF  GNCSC DYW
Sbjct: 688 ITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 212/464 (45%), Gaps = 93/464 (20%)

Query: 43  SLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM---FD 96
           +LIK    IK   Q KQ+H Q +RT       S S       +  +++L+   E    F 
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRT------QSLSHTSASIVISIYTNLKLLHEALLLFK 63

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +  P +  W ++IR ++  +   ++   F+++   S   P+   FP V+K+   ++  R
Sbjct: 64  TLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM-RASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYA-ICG------------------------DLA 191
            G+++HG +++   + DL+  N+L++ YA + G                        D+ 
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK 182

Query: 192 MAYC-----------VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
              C           VF ++ +KDVVS+N++I+G+ Q G +E A+ + REM   ++KPD 
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS 242

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
            T+ +V                   L IF E             +V V+           
Sbjct: 243 FTLSSV-------------------LPIFSE-------------YVDVIK---------- 260

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G +IH  + ++GI  + Y+ +SL+DMY K   ++ +  VF  +  RD   W++++AG+  
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G   EAL LF +M  AKVKP AV F++V+ AC+H   +  G+     +    G    + 
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR-GGFGSNIF 379

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             + +VDM  + G +  A +  ++M ++   S W A++    +H
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALH 422



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 167/344 (48%), Gaps = 18/344 (5%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+FS   +  ++ + K+IH  ++R G+  D Y  S L    A    + +E +  +F ++ 
Sbjct: 250 PIFS---EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKS--ARIEDSERVFSRLY 304

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  +WN+L+  Y  +    ++  +F Q+V  +   P    F  VI A A L    +G+
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMV-TAKVKPGAVAFSSVIPACAHLATLHLGK 363

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG V++  F  ++FI+++L+  Y+ CG++  A  +F  +   D VSW ++I G    G
Sbjct: 364 QLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A+ L+ EM+ + VKP++V  VAVL+AC+    ++      EA   F+ +     +N
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD------EAWGYFNSMTKVYGLN 477

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL---DKA 336
            +   + +V     + G ++      +KM    ++    + ++L+   +   NL   +K 
Sbjct: 478 QELEHYAAVADLLGRAGKLEEAYNFISKM---CVEPTGSVWSTLLSSCSVHKNLELAEKV 534

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            E   TV S ++  +  M   +A  G  +E   L  RM++  ++
Sbjct: 535 AEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLR 578


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 341/602 (56%), Gaps = 63/602 (10%)

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           +S    P  +  +F  L   +   P+  TF   + A ARL   R G+++      + ++D
Sbjct: 84  HSRRGSPASALRVFRALPPAAR--PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+F+ +SL+H YA  G +  A  VF  + ++D V+W++M++GFV  G    AI++YR M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL------------SKN--- 277
            + VK DEV M+ V+ AC   R++  G   +  L + H +++            +KN   
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 278 ----------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK------------- 314
                     V+ ++ ++ +++S  AQ G  D  +++   M+  GI+             
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 315 ---------------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                                 NC L T+ IDMY+KCG+L  A  +F+ +  RD+ +W+ 
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIA    +G G++AL LF  M E  ++P+  TF ++L A SHSGLV+EG+++F  M   +
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHF 440

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            + P  KHY C+VD+L R+GL++EA + +  M   P  ++W ALL  C  ++ +EL E  
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
             ++LEL+P++ G L L+SN+YA T KWD V ++RK M+ SG KK PGCSSIE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHA 560

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           FL  + SHP  +EI SK+ ++   ++  GY+P    +   +EEE V+EQ L+ HSE+LAI
Sbjct: 561 FLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE-VKEQQLSYHSEKLAI 619

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+GL++  P   + I+KNLRVCGDCH   K ISK+ +REI++RD  RFHHF+ G CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 654 YW 655
           YW
Sbjct: 680 YW 681



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 41  VFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  +I+ C   +N++    +H  +LR G+  D  +A+ L    A      L+ A  +F  
Sbjct: 212 MIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGL--LDVACRVFGL 269

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   N  +W+ +I  ++ + +  ++  +F  +   S   P+       + A + +   ++
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNM-QASGIQPDSGALVSALLACSNIGFLKL 328

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+++HG +++  F+ +  +  + I  Y+ CG LA A  +F MI  +D++ WN+MI+    
Sbjct: 329 GRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGA 387

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEALSIFHELQLSK 276
            G  + A+ L++EM    ++PD  T  ++LSA +    +E G+ W    ++ F       
Sbjct: 388 HGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHF------- 440

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
            + P E  +V ++   A+ G ++    +   MK +
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAE 475


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 335/559 (59%), Gaps = 46/559 (8%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  + +  ++L RA +    P ++   + +L+  +  F + F F    KA A L   R G
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPF-SSFAFTAAAKACADLSALRTG 128

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            A+H   +   F  D F+  +L+  Y+ CG L +A  +F  I  + VV+WN+MISG+ Q 
Sbjct: 129 MAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQN 188

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E+AIE+YR                                         E+Q+++ V
Sbjct: 189 GLAERAIEVYR-----------------------------------------EMQVAQVV 207

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TFV+ LSACAQ GA+D+G ++  ++    + ++ +L ++L++MY +CG + KA +
Sbjct: 208 -PDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARD 266

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            F  ++ R+V  W++MIAG+ M+G GREA+ LF  M+     PN VTF  VL AC+H+GL
Sbjct: 267 WFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGL 326

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGAL 457
           V+EGR  F+ M+ VYG+VP  +HY  MVDM GRAGLLD+A++FI + +P  PG  VW A+
Sbjct: 327 VNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAM 386

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK+H+N  L       L+ LEPEN    VLLSNIYA +GK ++V ++R  M    LK
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLK 446

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K+ G S IE+ G  H F  GE SH   +EIY  L+E++ R+   GYVP    +L  +EEE
Sbjct: 447 KQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVPETDSVLHELEEE 506

Query: 578 DVQEQALNLHSERLAIAYGL-ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
             +E AL  HSE+LA+AYGL +S   + PIR++KNLR+CGDCH   K +S + +REI++R
Sbjct: 507 -EREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVESREIIVR 565

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D++RFHHF+ G CSC++YW
Sbjct: 566 DKHRFHHFKDGKCSCLEYW 584


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/637 (37%), Positives = 364/637 (57%), Gaps = 31/637 (4%)

Query: 24  NPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFD---PYSASKLFTPC 80
           +PT L + +        +FSL +  KN    K++H Q++++GL      P +    +  C
Sbjct: 6   SPTVLALKS-------QLFSLGR--KNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKC 56

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
            L     L+ A ++FD +PQ +   W T++ A + S  P ++F I L +++     P+ F
Sbjct: 57  GL-----LKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQ-PDHF 110

Query: 141 TFPFVIKAAARL--VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
            F  +IKA A L  V  ++G+ +H   + S F +D  + +SL+  YA          VF 
Sbjct: 111 VFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFD 170

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
            I +   +SW +MISG+ + G   +A+EL+RE   +N+        A++S   +  +   
Sbjct: 171 SIFELSSISWTAMISGYARSGRKLEALELFRESPFKNL----YAWTALISGLVQSGN--- 223

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
               N+AL +F E++       D     SV+ ACA     ++G Q+H  +   G +   +
Sbjct: 224 ---ANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLF 280

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           ++ +L+DMY KC ++  A  +F  ++ +DV  W+++I G A +G   EAL L+  M  A 
Sbjct: 281 ISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAG 340

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           VKPN VTF  ++ ACSH GLV +GR  F  M   +G+ P ++HYTC++D+  R+G LDEA
Sbjct: 341 VKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEA 400

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
              I  MP+ P    W ALL ACK H N ++A     HLL+L+PE+  + +LLSNIYA  
Sbjct: 401 ENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGA 460

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
           G W+NVS +RK M V  +KK PG S +++  E   F AGE+S P+  EI   + ++ + +
Sbjct: 461 GMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEM 520

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           +  GYVP+ S +L  +++++ +E+ L  HSERLA+AYGL+   P   IRIVKNLRVCGDC
Sbjct: 521 RRRGYVPDTSSVLLDMDQQE-KERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDC 579

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           HTV KLIS + +REI +RD  R+HHF+ G CSC D+W
Sbjct: 580 HTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/481 (42%), Positives = 303/481 (62%), Gaps = 43/481 (8%)

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            ++N+L+  YA  G    A+ VF  +  KDV+SW S+++G V  G +E            
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYE------------ 50

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                        EAL +F E+++   ++PD+    +VLSACA+
Sbjct: 51  -----------------------------EALRLFCEMRI-MGIHPDQIVIAAVLSACAE 80

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L  ++ G Q+HA   K G+  +  +  SL+ MY KCG ++ A +VF +++ +DV  W+ +
Sbjct: 81  LTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTAL 140

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G+A  G GRE+L+ ++ M  + VKP+ +TF  +L ACSH+GLV+ GR +F  ME VYG
Sbjct: 141 IVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYG 200

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + PG +HY CM+D+LGR+G L EA E + +M + P A+VW ALL AC++H NVEL E A 
Sbjct: 201 IKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAA 260

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
           ++L ELEP+N    VLLSN+Y+  GKW+  ++ R+ M++ G+ KEPGCS IE++ ++H+F
Sbjct: 261 NNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRF 320

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           ++ + SHP   EIYSK+DEI+  +K  GYVP+ +  L  ++EE  +E  L  HSE+LA+A
Sbjct: 321 MSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG-KELGLAYHSEKLAVA 379

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GL+++ P  PIRI KNLR+CGDCHT  K +S +++R ++LRD   FHHFR G CSC DY
Sbjct: 380 FGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDY 439

Query: 655 W 655
           W
Sbjct: 440 W 440



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 28/287 (9%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
            +YA ++F+++   ++ +W +L+     +    ++  +F ++     + P++     V+ 
Sbjct: 18  FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH-PDQIVIAAVLS 76

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A L     G+ +H   +KS     L + NSL+  YA CG +  A  VF  +  +DV++
Sbjct: 77  ACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVIT 136

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W ++I G+ Q G   +++  Y +M    VKPD +T + +L AC+    +E GR   +++ 
Sbjct: 137 WTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSME 196

Query: 268 IFH--------------------------ELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
             +                          EL     V PD   + ++L+AC   G +++G
Sbjct: 197 EVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELG 256

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
            +    + +   K N      L ++Y+  G  ++A +    +K R V
Sbjct: 257 ERAANNLFELEPK-NAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 55/285 (19%)

Query: 37  HPHPVF--SLIKQCKNIKQL---KQIHTQMLRTGL---FFDPYSASKLFTPCALGTFSSL 88
           HP  +   +++  C  +  L   KQ+H   L++GL        S   ++  C       +
Sbjct: 65  HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCG-----CI 119

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E A ++FD +   ++ TW  LI  Y+ +    +S   +  ++  S   P+  TF  ++ A
Sbjct: 120 EDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMI-ASGVKPDFITFIGLLFA 178

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            +       G   HG     S E+   I     H+           C+  ++G+      
Sbjct: 179 CS-----HAGLVEHGRSYFQSMEEVYGIKPGPEHY----------ACMIDLLGRS----- 218

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
                     G   +A EL  +M    V+PD     A+L+AC    ++E G     A + 
Sbjct: 219 ----------GKLMEAKELLNQMA---VQPDATVWKALLAACRVHGNVELGE---RAANN 262

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
             EL+  KN  P  +  +S L + A  G  +   +    MK +G+
Sbjct: 263 LFELE-PKNAVP--YVLLSNLYSAA--GKWEEAAKTRRLMKLRGV 302


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/692 (34%), Positives = 375/692 (54%), Gaps = 96/692 (13%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H ++L+ G   D ++ + L        F  L  A ++FD++P+ N  ++ TLI+ Y+
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S   +++  +F++L +   +  N F F  ++K         +G  IH  + K   E + 
Sbjct: 116 ESVRFLEAIELFVRL-HREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNA 174

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+  +LI  Y++CG + +A  VF  I  KD+VSW  M++ F +   F++A++L+ +M M 
Sbjct: 175 FVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMV 234

Query: 235 NVKPDEVTMVAVLSA---------------CA--------------------KKRDLEFG 259
             KP+  T  +V  A               CA                    K  D++  
Sbjct: 235 GFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDA 294

Query: 260 R-------------WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
           R             W              EA+ +F +++ +  V P++FTF SVL ACA 
Sbjct: 295 RRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL-VLPNQFTFASVLQACAT 353

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +  +++G QIH  + K G+  + +++ +L+D+Y KCG ++ ++E+F     R+   W+T+
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTV 413

Query: 355 IAGFAMYGCGREALDLFSRMQEAKV-------------------------------KPNA 383
           I G    G G +AL LF  M E +V                               KP+ 
Sbjct: 414 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDK 473

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +TF  VL AC+++GL+D+G+ +F  M   +G+ P ++HYTCMV +LGR G LD+AV+ I+
Sbjct: 474 LTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLID 533

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
           ++P  P   VW ALLGAC IH ++EL   +   +LE+EP++    VLLSN+YA   +WDN
Sbjct: 534 EIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDN 593

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V+ +RK+M+  G+KKEPG S IE  G +H F  G++SHP  + I   L+ +  + K  GY
Sbjct: 594 VASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGY 653

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
           +PN + +L  VE+E+ +E+ L +HSERLA+++G+I      PIRI+KNLR+C DCH   K
Sbjct: 654 IPNYNVVLLDVEDEE-KERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIK 712

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 713 CISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 186/444 (41%), Gaps = 93/444 (20%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           N  +  +S     +QS  +  + V + SP   N   +   ++   +  +   G+ +H  +
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K     DLF  N L++ Y     L  A  +F  + +++ +S+ ++I G+ +   F +AI
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           EL+  +  E                                   HEL      NP  F F
Sbjct: 125 ELFVRLHREG----------------------------------HEL------NP--FVF 142

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
            ++L         ++G  IHA + K G + N ++ T+LID Y+ CG +D A EVF  +  
Sbjct: 143 TTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILY 202

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC------------ 393
           +D+  W+ M+  FA   C +EAL LFS+M+    KPN  TF +V  AC            
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262

Query: 394 -----------------------SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
                                  + SG +D+ R  F ++ P   V+P    ++ M+    
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEI-PKKDVIP----WSFMIARYA 317

Query: 431 RAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           ++    EAVE   +M    ++P    + ++L AC   E + L      H++++   +   
Sbjct: 318 QSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSD-- 375

Query: 488 LVLLSN----IYAKTGKWDNVSEL 507
            V +SN    +YAK G+ +N  EL
Sbjct: 376 -VFVSNALMDVYAKCGRMENSMEL 398


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/633 (37%), Positives = 363/633 (57%), Gaps = 40/633 (6%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTF----SSLEYAREMFD 96
           L++ C     L   +++H  ++ TG+   P    + F   AL  F         AR++FD
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAP----ETFLHNALLQFYASCGCAWQARKVFD 74

Query: 97  QIPQPNLYT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           +IP  +  T  W TL+  +       ++ +IF+++       P+E T   +    ARL  
Sbjct: 75  EIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEM-RRCGVKPDEVTLVCLFGGCARLGD 133

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             VG   HG ++K          N+++  YA  G +  A  VF  +  + VVSW  ++ G
Sbjct: 134 VVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDG 193

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
            ++         ++ EM   N     + +   L +   +          E+ ++  E+  
Sbjct: 194 VIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQ----------ESFALVREMIF 243

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKCGNL 333
              +  +  T  S+L+AC+Q G + +G  +HA  +K +  +LN  + T+++DMY KCG +
Sbjct: 244 DLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRI 303

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A + F  +  R+V  W+ M++G AM+G GR ALD+F +M + + KP+ VTFT+VL AC
Sbjct: 304 HIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFK-EAKPDDVTFTSVLSAC 362

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SHSGLVD+G  +F  +E VYG+ P V+HY CMVD+LGRAG L+EA   + +MPI P   V
Sbjct: 363 SHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVV 422

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            G+LLG+C IH  ++L E+    L++L+P+N    +LLSN+YA  GK +  + LR+ ++ 
Sbjct: 423 LGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKK 482

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ- 572
            G+KK PG SSI V G++H+F AG+ SHP  +E+Y+ LDE++ RL+  GY PN +  LQ 
Sbjct: 483 RGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTA--LQT 540

Query: 573 ----------LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
                     LVE+E+ +EQAL  HSE+LAI +GLIS  P  P+ I KNLR+C DCH+  
Sbjct: 541 FAGCDSLEDDLVEQEE-KEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAI 599

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K++SK+YNREI++RDR RFH F+ G+CSC DYW
Sbjct: 600 KIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 342/604 (56%), Gaps = 13/604 (2%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           + L++ H ++++ GL   P + + L +  A      L   R +FD+ P+ +L+ +++L+ 
Sbjct: 20  RSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRL--LPDTRLLFDETPRRDLHLYSSLLA 77

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
           A S S  P     +  +++      P+ F    +  A ARL    +G+ +HG  + S + 
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYS 137

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D  + +SLI  Y  CG    A  VF  I  K+ V W ++ISG+V  G  ++A+EL+R M
Sbjct: 138 SDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
               +        A++S   +  +         A+ +F +++       D F   S +  
Sbjct: 198 PGRTL----FAWTALISGFVRSGE------SVSAVKLFVDMRRDGVSIDDAFVLSSAIGG 247

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
            A L A  +G Q+H+   + G   +  +  +++DMY+KC ++  A EVF  +  RD+  W
Sbjct: 248 AADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISW 307

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +TM+ G A +G   EA  L+ RM  A VKPN VTF  ++ ACSH+GLV +GR  F+ M+ 
Sbjct: 308 TTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKG 367

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            YG+ P ++HYTC +D+L R+G L EA E I  MP VP  + W +LL ACK + N E++ 
Sbjct: 368 EYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSI 427

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
               +LLEL P+     VLLSN+YA  GKWD+V  +RK M    ++KEPG S IEV  E 
Sbjct: 428 RVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREF 487

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
             F AGE    L +EI   L+E+V+ ++  GYVP+ S ++  +EE + +E  L LHSERL
Sbjct: 488 RLFHAGEVPIDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHE-KEHHLCLHSERL 546

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+A+G++       IR+VKNLRVC DCHTV K IS+++ R+I++RD  RFHHF GG CSC
Sbjct: 547 AVAFGILRSPLGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSC 606

Query: 652 MDYW 655
            ++W
Sbjct: 607 SEFW 610


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 342/621 (55%), Gaps = 55/621 (8%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRT-----GLFFDPYSASKLFTPCALGTFSSLEYAREM 94
            + + I  C +I   + +H +++++     G   D   +S +   C        + A E+
Sbjct: 43  ALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCT-------KDALEL 95

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD++P  +L +WN+LI  +S  A+      +  ++ +     PNE T   V+ A A + +
Sbjct: 96  FDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGE 155

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             VG+ IHG+ +KS    ++ + NSLI+ Y  CG L  A C+F  +  + +VSWNSM++ 
Sbjct: 156 LDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAV 215

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
            V  G  EK I  +  M                                           
Sbjct: 216 HVHMGLAEKGIGYFIMMR------------------------------------------ 233

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
              +N D+ T VS+L AC  LG   +   +H  +   G+  N  + T+L+D+Y K G L 
Sbjct: 234 RAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLS 293

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            + +VF  + + D   W+ M++ +AM+G GREA++ F  M    V P+ VTFT++L ACS
Sbjct: 294 DSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACS 353

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           HSGLV+EG+ +F  M   YGV   V+HY+CMVD+LGR+G L++A + I+ MP+ P + VW
Sbjct: 354 HSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVW 413

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GAL+GAC++  N+EL +     L  L+P +    + LSN+Y+  G+W + S++R  M+  
Sbjct: 414 GALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKER 473

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
            L + PGCS IE   +IH F+ G+ SHP  ++IY+KL+E+V + +  G+     ++L  V
Sbjct: 474 VLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDV 533

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE V+E  +N HSE+LAIA+GL+      P+ I KN+R+CGDCH  AKLIS +  R I+
Sbjct: 534 DEE-VKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTII 592

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF  G CSC DYW
Sbjct: 593 IRDTKRFHHFTNGLCSCGDYW 613



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 9/203 (4%)

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           NV+      ++ +S C+ +        +H ++ K     + ++   L+  Y + G    A
Sbjct: 36  NVDSLVSALITAISTCSSISYCR---ALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDA 92

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSH 395
           LE+F  +  +D+  W+++I+GF+        L L  RM+ E  +KPN VT   V+ AC+ 
Sbjct: 93  LELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAG 152

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G +D G+   + +    G++  VK    ++++ G+ G L+ A    E M +    S W 
Sbjct: 153 VGELDVGKC-IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVS-WN 210

Query: 456 ALLGACKIHENVELAEYACSHLL 478
           +++    +H ++ LAE    + +
Sbjct: 211 SMVA---VHVHMGLAEKGIGYFI 230


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 355/623 (56%), Gaps = 61/623 (9%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R +FD + +  +  W  LI  Y+ S    ++  +FL ++ N  + P+++T   ++ A   
Sbjct: 209 RRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENG-FQPDQYTLSSMLSACTE 267

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD---LAMAYCVFVMIGKKDVVSW 208
           L  FR+GQ +H + ++   E D  +S  L+  YA   +   L  A  VF  + K +V++W
Sbjct: 268 LGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAW 327

Query: 209 NSMISGFVQGGFFEKAIE-LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------ 261
            +++SG+VQ G  +  +  L+ +M  E ++P+ +T  ++L ACA   D + GR       
Sbjct: 328 TALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCV 387

Query: 262 ----------PNEALSIFHE-------------------LQLSKNVNPD----------- 281
                      N  +S++ E                   +  S N++ D           
Sbjct: 388 KSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQI 447

Query: 282 --------EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                    FTF S++SA A +G +  G ++HA   K G   +  +  SL+ MY++CG L
Sbjct: 448 ERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYL 507

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A +VF  +   +V  W++MI+G A +G    AL+LF  M  A VKPN VT+  VL AC
Sbjct: 508 VDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSAC 567

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SH+GLV EG+  F  M+  +G++P ++HY CMVD+LGR+GL+++A++FI +MP    A V
Sbjct: 568 SHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALV 627

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           W  LLGACK H N+++ E A +H+++LEP++    VLLSN+YA+ G WD V+ +R  MR 
Sbjct: 628 WKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRD 687

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
             L KE G S + V+  IH+F AG++SHP  +EIY+KL+ ++  +K  GYVP+ S +L  
Sbjct: 688 KNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHD 747

Query: 574 VEEEDVQEQALNLHSERLAIAYGLIS-VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
           + +E ++E  L  HSE++A+A+GLIS    ++PIRI KNLRVC DCH+  K +SK   RE
Sbjct: 748 MSDE-LKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGRE 806

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I+LRD  RFH  + G CSC +YW
Sbjct: 807 IILRDSNRFHRMKDGECSCGEYW 829



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 177/398 (44%), Gaps = 60/398 (15%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQCK---NIKQLKQIHTQMLRTG--LFFDPYSAS 74
            RH  P T T        P    +L+       +I   + +   +LRTG  L  D   A+
Sbjct: 29  SRHRKPLTTTAAGQAALQPSEAAALLTAAARARDIHLGRALQGHLLRTGSLLETDAVVAN 88

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
            L T       S++  AR +FD +P    +L +W  +    S +    ++  +F + +  
Sbjct: 89  SLLT--LYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETL-E 145

Query: 133 SPYFPNEFTFPFVIKA--AARLVQFRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGD 189
               PN FT     +A  A+ L     G A+ G+V K  F   D+ +  +LI  +A  GD
Sbjct: 146 EGLLPNAFTLCAATQACFASELFHL-AGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGD 204

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           L     VF  + ++ VV W  +I+ + Q G+ ++A+EL+ +M     +PD+ T+ ++LSA
Sbjct: 205 LVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSA 264

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C                                           +LG+  +G Q+H+   
Sbjct: 265 C------------------------------------------TELGSFRLGQQLHSLAL 282

Query: 310 KQGIKLNCYLTTSLIDMYTKCGN---LDKALEVFHTVKSRDVFVWSTMIAGFAMYGC-GR 365
           + G++ +  ++  L+DMY K  N   L  A EVF+ +   +V  W+ +++G+   G    
Sbjct: 283 RLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDN 342

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           + + LF +M    ++PN +T++++L AC++ G  D GR
Sbjct: 343 QVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGR 380



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 13/213 (6%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C N+      +QIHT  +++ L       + L +  A     S+E AR  FDQ+ 
Sbjct: 365 SMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYA--ESGSIEEARHAFDQLY 422

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMI-FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           + N+ +++  +     S    Q + I  ++L  ++      FTF  +I AAA +     G
Sbjct: 423 EKNMVSFSGNLDGDGRS-NTYQDYQIERMELGIST------FTFGSLISAAASVGMLTKG 475

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           Q +H + +K+ F  D  I NSL+  Y+ CG L  A  VF  +   +V+SW SMISG  + 
Sbjct: 476 QRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKH 535

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           G+  +A+EL+ +M    VKP++VT +AVLSAC+
Sbjct: 536 GYAARALELFHDMIAAGVKPNDVTYIAVLSACS 568


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 294/464 (63%), Gaps = 12/464 (2%)

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           MA  +F  I  +++V   +MISG+ + G  E A  ++ +ME    + D V   A++S  A
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQME----EKDLVCWSAMISGYA 56

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
           +         P EAL++F E+Q+   + PD+ T +SV+SACA+LG +D    IH  + K 
Sbjct: 57  ESDK------PQEALNLFSEMQVF-GIKPDQVTILSVISACARLGVLDRAKWIHMYVDKN 109

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
           G+     +  +LIDMY KCGNL  A  VF  ++SR+V  W++MI  FA++G    AL  F
Sbjct: 110 GLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFF 169

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            +M++  +KPN VTF  VL ACSH+GLV+EGR  F  M   + + P  +HY CMVD+ GR
Sbjct: 170 YQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGR 229

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491
           A LL +A+E +E MP+ P   +WG+L+ AC+IH   EL E+A   +LELEP++ GALV L
Sbjct: 230 ANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQL 289

Query: 492 SNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKL 551
           SNIYAK  +W +V ELR  M+  G+ KE GCS IE+N ++++F+  +  H    +IY KL
Sbjct: 290 SNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKL 349

Query: 552 DEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           DE+V  LK  GY PN   +L  VEEE  +E  L  HSE+LA+ YGL+       IRIVKN
Sbjct: 350 DEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVL-WHSEKLALCYGLMGEGKGSCIRIVKN 408

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LRVC DCHT  KL+SK+Y  EI++RDR RFHH++ G CSC DYW
Sbjct: 409 LRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 47/297 (15%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-VYNSPYFPNEFTFPFVI 146
           +E AR +FDQ+ + +L  W+ +I  Y+ S +P ++  +F ++ V+     P++ T   VI
Sbjct: 30  VEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIK--PDQVTILSVI 87

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A ARL      + IH  V K+     L ++N+LI  YA CG+L  A  VF  +  ++V+
Sbjct: 88  SACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVI 147

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SW SMI+ F   G    A++ + +M+ EN+KP+ VT V VL AC+    +E GR      
Sbjct: 148 SWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGR------ 201

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
             F  +    N+ P    +      C                              ++D+
Sbjct: 202 RTFASMTNEHNITPKHEHY-----GC------------------------------MVDL 226

Query: 327 YTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           + +   L  ALE+  T+  + +V +W +++A   ++  G   L  F+  Q  +++P+
Sbjct: 227 FGRANLLRDALELVETMPLAPNVVIWGSLMAACQIH--GENELGEFAAKQVLELEPD 281


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 365/659 (55%), Gaps = 68/659 (10%)

Query: 19  LPRHPNPTTLTVN-----NGHQHHPHP-----------------VFSLIKQCKNIKQLKQ 56
           LPR  N ++L+ N     +  Q    P                 +  L  +   + + K 
Sbjct: 25  LPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKA 84

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
            H + +R  L  D   ++ L    +   F  +E AR++FD + + +L +WNT+I  Y+ +
Sbjct: 85  CHGKTMRMELQGDVTLSNVLINAYSKCGF--VELARQVFDGMLERSLVSWNTMIGLYTRN 142

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
               ++  IF ++  N  +  +EFT   V+ A          + +H + +K+S + +L++
Sbjct: 143 RMESEALDIFWEM-RNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYV 201

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
             +L+  YA CG +  A  VF  +  K  V+W+SM++G+VQ   +E+A+ LYR       
Sbjct: 202 GTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRR------ 255

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                         A++  LE                       ++FT  SV+ AC+ L 
Sbjct: 256 --------------AQRMSLE----------------------QNQFTLSSVICACSNLA 279

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
           A+  G Q+HA ++K G   N ++ +S +DMY KCG+L ++  +F  V+ +++ +W+T+I+
Sbjct: 280 ALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIIS 339

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           GFA +   +E + LF +MQ+  + PN VTF+++L  C H+GLV+EGR FF  M   YG+ 
Sbjct: 340 GFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLS 399

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
           P V HY+CMVD+LGRAGLL EA E I+ +P  P AS+WG+LL +C++ +N+ELAE A   
Sbjct: 400 PNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKK 459

Query: 477 LLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536
           L ELEPEN G  VLLSNIYA   +W+ +++ RK +R   +KK  G S I++  ++H F  
Sbjct: 460 LFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRV 519

Query: 537 GESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           GESSHP  +EI + LD +V  L+ FGY P+  H L  VE    +E+ L  HSE+LA+ +G
Sbjct: 520 GESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGK-KEELLMQHSEKLALVFG 578

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L+ +     +RI+KNLR+C DCH   K  S    R I++RD  RFHHF  G+CSC ++W
Sbjct: 579 LMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 336/606 (55%), Gaps = 58/606 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTLIRAY 113
           Q H Q+ + G  F+P+  + L +    G+   ++ AR++F++       T  +N L+  Y
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSL--VDNARKVFEENFHSRKLTVCYNALVSGY 118

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
            S+++   + ++F Q+  N    P N  T   +I A    +   +G ++H   +K  F+ 
Sbjct: 119 VSNSKCSDAVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDS 176

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+ + N  I  Y  CG +  A  +F  +  K ++SWN+M+SG+ Q G     +ELYR M+
Sbjct: 177 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 236

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           M                                            V+PD  T V VLS+C
Sbjct: 237 M------------------------------------------NGVHPDPVTLVGVLSSC 254

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A LGA  +G ++  KM+  G   N +L  +LI+MY +CGNL KA  VF  +  R +  W+
Sbjct: 255 ANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWT 314

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +I G+ M+G G  A+ LF  M  + ++P+   F  VL ACSH+GL D+G  +F  M+  
Sbjct: 315 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRN 374

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           Y + PG +HY+CMVD+LGRAG L EA   IE MPI P  +VWGALLGACKIH+NVELAE 
Sbjct: 375 YQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAEL 434

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   ++ELEPEN G  VLLSNIY+       V  +R  M+   LKK+PGCS +E+ G +H
Sbjct: 435 AFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVH 494

Query: 533 KFLAGESSHPLCKEIYSKLDEIVA-RLKSFGYVPNRSHLLQLVEEEDVQE--QALNLHSE 589
            F+ G+ +H    EIY  L+E+ A  ++ FG  P + +      EE  ++    + +HSE
Sbjct: 495 PFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK-PEKDN-----REESNKDGFTRVGVHSE 548

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL++      + I+KNLR+C DCH   K++SK+ +R++ +RD  RFHHFR G+C
Sbjct: 549 KLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSC 608

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 609 SCKDYW 614



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 176/420 (41%), Gaps = 51/420 (12%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WNT +R  +   + +Q+  ++ Q++ +    PN FTFPF +K+ A L    +G   HG +
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDR-PNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV--MIGKKDVVSWNSMISGFVQGGFFEK 223
            K     + F+   LI  Y     +  A  VF      +K  V +N+++SG+V       
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+ L+R+M  E V  + VT++                                       
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLG-------------------------------------- 148

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
               ++ AC     +++G  +H    K G   +  +    I MY KCG+++ A ++F  +
Sbjct: 149 ----LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEM 204

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             + +  W+ M++G+A  G     L+L+  M    V P+ VT   VL +C++ G    G 
Sbjct: 205 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 264

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
               +M+   G          +++M  R G L +A    + MP     S W A++G   +
Sbjct: 265 EVEFKMQ-ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS-WTAIIGGYGM 322

Query: 464 HENVELAEYACSHLLE--LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           H + E+A      ++   +EP+    + +LS   +  G  D   E  K M+    + EPG
Sbjct: 323 HGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC-SHAGLTDQGLEYFKMMK-RNYQLEPG 380


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/674 (35%), Positives = 370/674 (54%), Gaps = 73/674 (10%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFDQ 97
           +++ C  I  L   K++H  ++R G   D    + L T    C       ++ AR +FD+
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG-----DVKSARLLFDR 256

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ ++ +WN +I  Y  +    +   +F  +       P+  T   VI A   L   R+
Sbjct: 257 MPRRDIISWNAMISGYFENGMCHEGLELFFAM-RGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  VI + F  D+ + NSL   Y   G    A  +F  + +KD+VSW +MISG+  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------------------ 259
               +KAI+ YR M+ ++VKPDE+T+ AVLSACA   DL+ G                  
Sbjct: 376 NFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435

Query: 260 -----------RWPNEALSIFHEL-----------------------------QLSKNVN 279
                      +  ++AL IFH +                             Q+   + 
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQ 495

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P+  T  + L+ACA++GA+  G +IHA + + G+ L+ +L  +L+DMY +CG ++ A   
Sbjct: 496 PNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQ 555

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F++ K +DV  W+ ++ G++  G G   ++LF RM +++V+P+ +TF ++LC CS S +V
Sbjct: 556 FNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMV 614

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            +G M+F++ME  YGV P +KHY C+VD+LGRAG L EA +FI+KMP+ P  +VWGALL 
Sbjct: 615 RQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLN 673

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH  ++L E +  H+ EL+ ++ G  +LL N+YA  GKW  V+++R+ M+ +GL  +
Sbjct: 674 ACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD 733

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
            GCS +EV G++H FL+ +  HP  KEI + L+    ++   G +   S    + E E  
Sbjct: 734 AGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVG-LTKISESSSMDETEIS 792

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +++    HSER AIA+GLI+  P  PI + KNL +C +CH   K ISK   REI +RD  
Sbjct: 793 RDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAE 852

Query: 640 RFHHFRGGNCSCMD 653
            FHHF+ G CSC D
Sbjct: 853 HFHHFKDGECSCGD 866



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 172/358 (48%), Gaps = 62/358 (17%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F +L  A  +F ++ + NL++WN L+  Y+      ++  ++ ++++     P+ +TFP 
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPC 201

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++    +     G+ +H  V++  +E D+ + N+LI  Y  CGD+  A  +F  + ++D
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---- 260
           ++SWN+MISG+ + G   + +EL+  M   +V PD +T+ +V+SAC    D   GR    
Sbjct: 262 IISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 261 --------------------------WPNEALSIFHELQLSK-------------NVNPD 281
                                     W  EA  +F  ++                N  PD
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLNAGSW-REAEKLFSRMERKDIVSWTTMISGYEYNFLPD 380

Query: 282 -----------------EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                            E T  +VLSACA LG +D GV++H    K  +     +  +LI
Sbjct: 381 KAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLI 440

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           +MY+KC  +DKAL++FH +  ++V  W+++IAG  +     EAL +F R  +  ++PN
Sbjct: 441 NMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPN 497



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 47/264 (17%)

Query: 145 VIKAAARLVQFRV----GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           V  A  RL +++     G  ++ + + S     + + N+ +  +   G+L  A+ VF  +
Sbjct: 96  VFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKM 155

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELY-REMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
            ++++ SWN ++ G+ + G+F++A+ LY R + +  VKPD  T   VL  C    DL  G
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG 215

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
           +                                          ++H  + + G +L+  +
Sbjct: 216 K------------------------------------------EVHVHVVRYGYELDIDV 233

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +LI MY KCG++  A  +F  +  RD+  W+ MI+G+   G   E L+LF  M+   V
Sbjct: 234 VNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSV 293

Query: 380 KPNAVTFTNVLCACSHSGLVDEGR 403
            P+ +T T+V+ AC   G    GR
Sbjct: 294 DPDLMTLTSVISACELLGDRRLGR 317



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EA+ + + +Q    V  DE  FV+++  C    A + G ++++        L   L  + 
Sbjct: 77  EAMKLLNSMQ-ELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAF 135

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPN 382
           + M+ + GNL  A  VF  +  R++F W+ ++ G+A  G   EA+ L+ RM     VKP+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPV-YGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
             TF  VL  C   G+ D  R     +  V YG    +     ++ M  + G +  A   
Sbjct: 196 VYTFPCVLRTC--GGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 442 IEKMPIVPGASVWGALL------GACKIHENVEL 469
            ++MP     S W A++      G C  HE +EL
Sbjct: 254 FDRMPRRDIIS-WNAMISGYFENGMC--HEGLEL 284


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 361/620 (58%), Gaps = 56/620 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S I+ C ++  +   KQ+H   L+ G+  + +  S L   ++ C      ++  A ++F+
Sbjct: 111 SAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG-----AMFDACKVFE 165

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  +  +W  +I  YS   E  ++ + F +++ +     ++      + A   L   +
Sbjct: 166 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI-DEEVTIDQHVLCSTLGACGALKACK 224

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
            G+++H  V+K  FE D+F+ N+L   Y+  GD+  A  VF +  + ++VVS+  +I G+
Sbjct: 225 FGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGY 284

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+    EK                                          LS+F EL+  
Sbjct: 285 VETEQIEKG-----------------------------------------LSVFVELR-R 302

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P+EFTF S++ ACA   A++ G Q+HA++ K     + ++++ L+DMY KCG L++
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 362

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++ F  +       W+++++ F  +G G++A+ +F RM +  VKPNA+TF ++L  CSH
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSH 422

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG  +F  M+  YGVVPG +HY+C++D+LGRAG L EA EFI +MP  P A  W 
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 482

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           + LGAC+IH + E+ + A   L++LEP+N GALVLLSNIYA   +W++V  +R  MR   
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KK PG S ++V  + H F A + SHP    IY KLD ++ ++K+ GYVP R+  + L  
Sbjct: 543 VKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP-RTDSVPLDM 601

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           ++ ++E+ L+ HSER+A+A+ LIS+   +PI + KNLRVC DCH+  K ISK+  R+I++
Sbjct: 602 DDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIV 661

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G+CSC DYW
Sbjct: 662 RDNSRFHHFTDGSCSCGDYW 681



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 13/264 (4%)

Query: 39  HPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H + S +  C  +K  K    +H+ +++ G   D +  + L           +E A  +F
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD--MYSKAGDMESASNVF 265

Query: 96  DQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
               +  N+ ++  LI  Y  + +  +   +F++L       PNEFTF  +IKA A    
Sbjct: 266 GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL-RRQGIEPNEFTFSSLIKACANQAA 324

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G  +H  V+K +F++D F+S+ L+  Y  CG L  A   F  IG    ++WNS++S 
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSV 384

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G  + AI+++  M    VKP+ +T +++L+ C+    +E      E L  F+ +  
Sbjct: 385 FGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE------EGLDYFYSMDK 438

Query: 275 SKNVNPDEFTFVSVLSACAQLGAM 298
           +  V P E  +  V+    + G +
Sbjct: 439 TYGVVPGEEHYSCVIDLLGRAGRL 462



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 3/186 (1%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D      V+   A+   +  G Q+HA +   G     +LT  L++MY+KCG LD AL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
            T+  R++  W+ MI+G +      EA+  F  M+     P    F++ + AC+  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-G 459
            G+   + +   +G+   +   + + DM  + G + +A +  E+MP     S W A++ G
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181

Query: 460 ACKIHE 465
             KI E
Sbjct: 182 YSKIGE 187


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 361/620 (58%), Gaps = 56/620 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S I+ C ++  +   KQ+H   L+ G+  + +  S L   ++ C      ++  A ++F+
Sbjct: 46  SAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG-----AMFDACKVFE 100

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  +  +W  +I  YS   E  ++ + F +++ +     ++      + A   L   +
Sbjct: 101 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI-DEEVTIDQHVLCSTLGACGALKACK 159

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
            G+++H  V+K  FE D+F+ N+L   Y+  GD+  A  VF +  + ++VVS+  +I G+
Sbjct: 160 FGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGY 219

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+    EK                                          LS+F EL+  
Sbjct: 220 VETEQIEKG-----------------------------------------LSVFVELR-R 237

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P+EFTF S++ ACA   A++ G Q+HA++ K     + ++++ L+DMY KCG L++
Sbjct: 238 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 297

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++ F  +       W+++++ F  +G G++A+ +F RM +  VKPNA+TF ++L  CSH
Sbjct: 298 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSH 357

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG  +F  M+  YGVVPG +HY+C++D+LGRAG L EA EFI +MP  P A  W 
Sbjct: 358 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 417

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           + LGAC+IH + E+ + A   L++LEP+N GALVLLSNIYA   +W++V  +R  MR   
Sbjct: 418 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 477

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KK PG S ++V  + H F A + SHP    IY KLD ++ ++K+ GYVP R+  + L  
Sbjct: 478 VKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP-RTDSVPLDM 536

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           ++ ++E+ L+ HSER+A+A+ LIS+   +PI + KNLRVC DCH+  K ISK+  R+I++
Sbjct: 537 DDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIV 596

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G+CSC DYW
Sbjct: 597 RDNSRFHHFTDGSCSCGDYW 616



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 13/264 (4%)

Query: 39  HPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H + S +  C  +K  K    +H+ +++ G   D +  + L           +E A  +F
Sbjct: 143 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD--MYSKAGDMESASNVF 200

Query: 96  DQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
               +  N+ ++  LI  Y  + +  +   +F++L       PNEFTF  +IKA A    
Sbjct: 201 GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL-RRQGIEPNEFTFSSLIKACANQAA 259

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G  +H  V+K +F++D F+S+ L+  Y  CG L  A   F  IG    ++WNS++S 
Sbjct: 260 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSV 319

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G  + AI+++  M    VKP+ +T +++L+ C+    +E      E L  F+ +  
Sbjct: 320 FGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE------EGLDYFYSMDK 373

Query: 275 SKNVNPDEFTFVSVLSACAQLGAM 298
           +  V P E  +  V+    + G +
Sbjct: 374 TYGVVPGEEHYSCVIDLLGRAGRL 397


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 364/619 (58%), Gaps = 33/619 (5%)

Query: 67  FFDPYSASKLFTPCA-LGTFS---SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
            FD  S   +F+  A L  +S   ++E  R +FDQ+   +  ++NT+I  +S +    Q+
Sbjct: 80  LFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQA 139

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
              F+++     +   ++T   V+ A ++L+  + G+ IHG ++ +S  + +F+ N+L +
Sbjct: 140 LEFFVRM-QEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTN 198

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA CG L  A  +F  +  K+VVSWNSMISG++Q G  E   +L+ EM+   + PD+VT
Sbjct: 199 MYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVT 258

Query: 243 MVAVLSA----------CAKKRDLEFGR---WPN------------EALSIFHELQLSKN 277
           +  +LSA          C   R+++      W              +AL +F E+ L +N
Sbjct: 259 ISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLL-EN 317

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD FT  SV+S+CA+L ++  G  +H K    G+  +  ++++L+DMY+KCG    A 
Sbjct: 318 VRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAW 377

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  + +R+V  W++MI G+A  G   EAL L+  M    +KP+ +TF  VL AC H+G
Sbjct: 378 IVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG 437

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV+ G+ +F  +  ++G+ P   HY+CM+++LGRAG +D+AV+ I+ M   P   +W  L
Sbjct: 438 LVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTL 497

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L  C+I+ +V   E A  HL EL+P N G  ++LSNIYA  G+W +V+ +R  M+ + +K
Sbjct: 498 LSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIK 557

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K    S IE++ ++HKF+A + +H   ++IY +L+ ++ +L+  G+ P+ + +L  V EE
Sbjct: 558 KFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEE 617

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQ-PIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           + +  ++  HSE+LA+A+ LI     + PIRI+KN+RVCGDCH   K +SK+  R I+LR
Sbjct: 618 E-KFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILR 676

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF  G CSC D W
Sbjct: 677 DINRFHHFIEGRCSCKDSW 695



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D F+ N L+H YA  G+L+ A  +F  + ++DV SWN+M+S + + G  E    ++ +M 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           +     D V+   V++              ++AL  F  +Q  +     ++T VSVL AC
Sbjct: 117 VH----DAVSYNTVIAG------FSGNGCSSQALEFFVRMQ-EEGFESTDYTHVSVLHAC 165

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           +QL  +  G QIH ++    +  + ++  +L +MY KCG LD+A  +F  + +++V  W+
Sbjct: 166 SQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWN 225

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           +MI+G+   G       LF  MQ + + P+ VT +N+L A    G +DE    F +++
Sbjct: 226 SMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIK 283



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 47/193 (24%)

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
            H  +  D F+ + ++  +A  G   +A DLF +M     + +  ++  +L A S SG V
Sbjct: 50  LHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMS----RRDVFSWNAMLSAYSKSGNV 105

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           ++ R  F+QM     V   V + T +    G  G   +A+EF  +M              
Sbjct: 106 EDLRAVFDQM----SVHDAVSYNTVIAGFSGN-GCSSQALEFFVRMQ------------- 147

Query: 460 ACKIHENVELAEY-------ACSHLLELE--PENHGALV------------LLSNIYAKT 498
                E  E  +Y       ACS LL+++   + HG +V             L+N+YAK 
Sbjct: 148 ----EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKC 203

Query: 499 GKWDNVSELRKHM 511
           G  D    L   M
Sbjct: 204 GALDQARWLFDRM 216


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/687 (33%), Positives = 365/687 (53%), Gaps = 105/687 (15%)

Query: 33  GHQHHPHPVFSLIKQCKN---IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFS 86
           G +   + + S+++ C     I++ + IH  +++ G   + Y  + L   +  C   + +
Sbjct: 207 GQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEA 266

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            + +    F++    N   W  ++  Y+ + +  ++ + F + ++      N+FTFP ++
Sbjct: 267 EILFKGLAFNK---GNHVLWTAMVTGYAQNGDDHKA-IEFFRYMHTEGVESNQFTFPSIL 322

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A + +     G+ +HG ++++ F  + ++ ++L+  YA CGDL  A  V   +   DVV
Sbjct: 323 TACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVV 382

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC---------------- 250
           SWNSMI G V+ GF E+AI L+++M   N+K D  T  +VL+ C                
Sbjct: 383 SWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIK 442

Query: 251 -----------------AKKRDLEFG-------------RWPN------------EALSI 268
                            AK  DL                 W +            E+L  
Sbjct: 443 TGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKT 502

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           F ++++S  V+PD+F   S+LSACA+L  ++ G Q+H+   K G++ +  +  SL+ MY 
Sbjct: 503 FCDMRIS-GVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYA 561

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG LD A  +F ++  RDV  W+ +I G+A  G GR++L                    
Sbjct: 562 KCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLK------------------- 602

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
                           +F QM+ +YG+ PG +HY CM+D+ GR G LDEA E + +M + 
Sbjct: 603 ----------------YFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVK 646

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A+VW ALL AC++H N+EL E A ++L ELEP N    V+LSN+Y    KWD+ +++R
Sbjct: 647 PDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIR 706

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           + M+  G+ KEPGCS IE+N  +H F++ +  HP   EIYSK+DEI+ R+K  GYVP+ +
Sbjct: 707 RLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMN 766

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
             L  ++ E  +E  L  HSE+LA+A+GL++  P  PIRI KNLRVCGDCH+  K IS +
Sbjct: 767 FSLHDMDREG-KEAGLAYHSEKLAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGV 825

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           + R I+LRD   FHHF+ G CSC DYW
Sbjct: 826 FTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 74/345 (21%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF-----------LQL 129
            L     ++ ARE+FD++ Q + YTWNT++  Y++    +++  +F             L
Sbjct: 124 GLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSL 183

Query: 130 VYNSPYF-------------------PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
           +     F                   P+++T   +++  + L   + G+ IHG V+K+ F
Sbjct: 184 ISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGF 243

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           E ++++   L+  YA C  ++ A  +F  +   K + V W +M++G+ Q G   KAIE +
Sbjct: 244 ESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFF 303

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
           R M  E V+ ++ T  ++L+AC+                                   SV
Sbjct: 304 RYMHTEGVESNQFTFPSILTACS-----------------------------------SV 328

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
            + C        G Q+H  + + G   N Y+ ++L+DMY KCG+L  A  V   ++  DV
Sbjct: 329 SAHC-------FGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDV 381

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             W++MI G   +G   EA+ LF +M    +K +  TF +VL  C
Sbjct: 382 VSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC 426



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 27/299 (9%)

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +F SN L++  +  G +  A  +F  + ++D  +WN+M+SG+   G   +A EL+     
Sbjct: 115 IFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSS 174

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            +      T  +++S   +     FGR   EA  +F  ++L +   P ++T  S+L  C+
Sbjct: 175 RSSI----TWSSLISGYCR-----FGRQA-EAFDLFKRMRL-EGQKPSQYTLGSILRGCS 223

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVW 351
            LG +  G  IH  + K G + N Y+   L+DMY KC ++ +A  +F  +     +  +W
Sbjct: 224 ALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLW 283

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + M+ G+A  G   +A++ F  M    V+ N  TF ++L ACS       G       E 
Sbjct: 284 TAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFG-------EQ 336

Query: 412 VYGVVP----GVKHY--TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           V+G +     G   Y  + +VDM  + G L  A   +E M      S W +++  C  H
Sbjct: 337 VHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVS-WNSMIVGCVRH 394



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 30/198 (15%)

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
           SIFH  QL              L+  ++ G +D   ++  KM    ++ + Y   +++  
Sbjct: 114 SIFHSNQL--------------LNGLSKSGQIDDARELFDKM----LQRDEYTWNTMVSG 155

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y   G L +A E+F+   SR    WS++I+G+  +G   EA DLF RM+    KP+  T 
Sbjct: 156 YANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTL 215

Query: 387 TNVLCACSHSGLVDEGRMFF-----NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            ++L  CS  GL+ +G M       N  E    VV G      +VDM  +   + EA   
Sbjct: 216 GSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAG------LVDMYAKCRHISEAEIL 269

Query: 442 IEKMPIVPGASV-WGALL 458
            + +    G  V W A++
Sbjct: 270 FKGLAFNKGNHVLWTAMV 287


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 349/603 (57%), Gaps = 28/603 (4%)

Query: 69  DPYSASKLFTPCALGTFSS-------------LEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           DP +A  +F    L + SS             ++ A+  F+Q+ + ++ +WN +I  Y+ 
Sbjct: 195 DPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQ 254

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
                ++  IF +++ +S   P++FT    + A A L   ++G+ IH  +I++ F+    
Sbjct: 255 HGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGA 314

Query: 176 ISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + N+LI  Y+  G + +A  +    MI   DV+++ +++ G+V+ G    A  ++  + +
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV 374

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            +V      +V  +             +  +A+ +F  + + +   P+ +T  ++LS  +
Sbjct: 375 RDVVAWTAMIVGYVQ----------NGFNQDAMELFRSM-IKEGPKPNNYTLATMLSVSS 423

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-SRDVFVWS 352
            L ++D G QIHA   + G   +  ++ +LI MY K G+++ A  VF+ +   RD   W+
Sbjct: 424 SLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWT 483

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +MI   A +G G EAL LF RM E  +KP+ +T+  VL AC+H GLV++GR ++N M+  
Sbjct: 484 SMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNA 543

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           + ++P   HY CM+D+ GRAGLL EA  FIE MPI P    WG+LL +CK+H+NVELAE 
Sbjct: 544 HKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEV 603

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   LL +EPEN GA   L+N+Y+  G+W+N + +RK M+  G+KK+ G S +++  ++H
Sbjct: 604 AAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVH 663

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F   +  HP    IY  + +I   +K  G+VP+   +L  +EEE ++EQ L+ HSE+LA
Sbjct: 664 IFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEE-LKEQILSHHSEKLA 722

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GLI    +  +RI+KNLRVC DCH+  K ISKL  REI++RD  RFHHF+ G CSC 
Sbjct: 723 IAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCR 782

Query: 653 DYW 655
           DYW
Sbjct: 783 DYW 785



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 201/446 (45%), Gaps = 88/446 (19%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVI 146
           LE A  +F+++P+P+  +W  +I  Y+   +   +  +F ++V +  P  P +FT   V+
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP--PTQFTLTNVL 152

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            + A +    +G+ +H  V+K      + ++NSL++ YA  GD   A  VF  +  K   
Sbjct: 153 ASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTS 212

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+MIS  +Q G  + A   + +M    ++ D V+  A++S   +     F R   EAL
Sbjct: 213 SWNTMISSHMQSGLVDLAQVQFEQM----IERDVVSWNAMISGYNQH---GFDR---EAL 262

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM------------------ 308
            IF ++ +  +  PD+FT  S LSACA L  + +G QIHA +                  
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISM 322

Query: 309 --KKQGIK-------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
             K  G++             L+    T+L+D Y K G+++ A  +F +++ RDV  W+ 
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTA 382

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPN------------------------------- 382
           MI G+   G  ++A++LF  M +   KPN                               
Sbjct: 383 MIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSG 442

Query: 383 ---AVTFTNVLCAC-SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
              +V+ +N L    + SG +++ R  FN +      +     +T M+  L + GL +EA
Sbjct: 443 NASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTIT----WTSMIIALAQHGLGEEA 498

Query: 439 VEFIEKM---PIVPGASVWGALLGAC 461
           +   E+M    I P    +  +L AC
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSAC 524



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 147/280 (52%), Gaps = 46/280 (16%)

Query: 151 RLVQFR---VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           R ++F+    G++IH  +IK+     +F+ N+L++FYA  G +  A+ VF  +  K V S
Sbjct: 22  RSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFS 81

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN ++SG+ +GG  E+A  ++ EM     +PD V+  A++         + G++ N A+ 
Sbjct: 82  WNIILSGYAKGGRLEEAHRVFEEMP----EPDSVSWTAMIVGYN-----QMGQFEN-AIG 131

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+ +S +V P +FT  +VL++CA +  + IG ++H+ + K G+     +  SL++MY
Sbjct: 132 MFREM-VSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMY 190

Query: 328 TKCGN-------------------------------LDKALEVFHTVKSRDVFVWSTMIA 356
            K G+                               +D A   F  +  RDV  W+ MI+
Sbjct: 191 AKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMIS 250

Query: 357 GFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSH 395
           G+  +G  REALD+FS+M  ++  KP+  T  + L AC++
Sbjct: 251 GYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACAN 290


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/621 (36%), Positives = 354/621 (57%), Gaps = 53/621 (8%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY---AREMFD 96
            + + +K C +I+  + +H +++++  +   +   +L     +G +  L +   A ++FD
Sbjct: 36  SLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQL-----VGCYLRLGHDVCAEKLFD 90

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQF 155
           ++P+ +L +WN+LI  YS      + F +  +++ +   F PNE TF  +I A       
Sbjct: 91  EMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSK 150

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ IHG+V+K    +++ + N+ I++Y   GDL  +  +F  +  K++VSWN+MI   
Sbjct: 151 EEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIH 210

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           +Q G  EK +  +                                  N +  + HE    
Sbjct: 211 LQNGLAEKGLAYF----------------------------------NMSRRVGHE---- 232

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
               PD+ TF++VL +C  +G + +   IH  +   G   N  +TT+L+D+Y+K G L+ 
Sbjct: 233 ----PDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLED 288

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +  VFH + S D   W+ M+A +A +G GR+A+  F  M    + P+ VTFT++L ACSH
Sbjct: 289 SSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSH 348

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SGLV+EG+ +F  M   Y + P + HY+CMVD+LGR+GLL +A   I++MP+ P + VWG
Sbjct: 349 SGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWG 408

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALLGAC+++++ +L   A   L ELEP +    V+LSNIY+ +G W + S +R  M+  G
Sbjct: 409 ALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKG 468

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS-FGYVPNRSHLLQLV 574
           L +  GCS IE   +IHKF+ G+ SHP  ++I  KL EI  ++KS  GY      +L  V
Sbjct: 469 LVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDV 528

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
             EDV+E+ +N HSE++A+A+GL+ V P +PI I KNLR+CGDCH  AK IS +  R I+
Sbjct: 529 -GEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRII 587

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF  G+CSC DYW
Sbjct: 588 IRDSKRFHHFLDGSCSCSDYW 608



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
           A + +C+K R L   R+ +++ S  H L    NV+    + ++ + +C    ++++   +
Sbjct: 4   ANVYSCSKFRFLYRRRFLSQS-SFVHSLD--ANVS----SLIAAVKSCV---SIELCRLL 53

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H K+ K     + ++   L+  Y + G+   A ++F  +  RD+  W+++I+G++  G  
Sbjct: 54  HCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYL 113

Query: 365 REALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            +  ++ SRM   E   +PN VTF +++ AC + G  +EGR     +   +GV+  VK  
Sbjct: 114 GKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMK-FGVLEEVKVV 172

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPI 447
              ++  G+ G L  + +  E + I
Sbjct: 173 NAFINWYGKTGDLTSSCKLFEDLSI 197


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/529 (41%), Positives = 317/529 (59%), Gaps = 22/529 (4%)

Query: 137 PNEFTFPFVI---------KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
           P+ FTF              AA  +    +G  +H + +K+    DL++ N+ IHFY +C
Sbjct: 121 PHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVC 180

Query: 188 GDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           GD+A    VF  +   +DVV+WN++++G+V+ G    A E++  M +     DEV+   V
Sbjct: 181 GDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVR----DEVSWSTV 236

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           +    K+ +      P  AL +F  + +++ V  +E   V+ LSA AQLG ++ G  +H 
Sbjct: 237 IGGYVKEGE------PEVALGVFKNM-VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHE 289

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            +K+ G+ ++  L  +LIDMY+KCG++  A EVF  +  RDVF W++MI G A +G G +
Sbjct: 290 VVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHD 349

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           A+ LF +       P ++TF  VL ACS +GLVDEGR +F  M   Y +   ++HY CMV
Sbjct: 350 AVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMV 409

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+L RAGL+ EAVE IE M I P   +WG +L ACK H  V+L     + L+EL+P + G
Sbjct: 410 DLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDG 469

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
             VLL++IYAK  KWD V ++RK M   G  K  G S +E +G +HKFL G+ +H     
Sbjct: 470 YYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSAR 529

Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
           IY+ L  I  RL   GYVP+ S +L  + +E+ +  A+ +HSERLAIAYG I VE   PI
Sbjct: 530 IYNMLCTINRRLAEAGYVPDVSSVLHDIGDEE-KVHAIKVHSERLAIAYGFIVVEAGSPI 588

Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           RIVKNL VCGDCH  +K+++K++ REI++RD  RFHH + G CSC DYW
Sbjct: 589 RIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 31/295 (10%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+FD +P  +  +W+T+I  Y    EP  +  +F  +V       NE      + AAA
Sbjct: 218 AREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG-VKANEAAIVTALSAAA 276

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           +L     G+ +H +V +      + +  +LI  Y+ CG +A A  VF  + ++DV +WNS
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----WPNEAL 266
           MI G    G    A++L+ +   E   P  +T V VL+AC++   ++ GR       E  
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 267 SIFHELQ--------LSK--------------NVNPDEFTFVSVLSACAQLGAMDIGVQI 304
            I  E++        LS+               + PD   + ++LSAC + G +D+G+ +
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV---FVWSTMIA 356
             K+ +     + Y    L  +Y K    D+  +V   + +R       WS M A
Sbjct: 457 GNKLIELDPAHDGYYVL-LASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEA 510



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 42/209 (20%)

Query: 279 NPDEFTFV---------SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           NP  FTF+         +  +A   + +  +G  +HA   K G   + Y+  + I  Y  
Sbjct: 120 NPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGV 179

Query: 330 CGNLDK--------------------------------ALEVFHTVKSRDVFVWSTMIAG 357
           CG++                                  A EVF  +  RD   WST+I G
Sbjct: 180 CGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGG 239

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G    AL +F  M    VK N       L A +  GL+++G+ F +++    G+  
Sbjct: 240 YVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK-FVHEVVKRVGMTM 298

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            V     ++DM  + G +  A E  + MP
Sbjct: 299 SVNLGAALIDMYSKCGSVAAAKEVFDAMP 327



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 42/221 (19%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQI 98
            S   Q   ++Q K +H  + R G+       + L   ++ C      S+  A+E+FD +
Sbjct: 272 LSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCG-----SVAAAKEVFDAM 326

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ +++ WN++I   ++      +  +F + V +  + P   TF  V+ A +     R G
Sbjct: 327 PRRDVFAWNSMICGLATHGLGHDAVQLFEKFV-SEGFCPTSITFVGVLNACS-----RTG 380

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
               G        +   I + + H+                           M+    + 
Sbjct: 381 LVDEGRRYFKLMAEKYDIESEMEHY-------------------------GCMVDLLSRA 415

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           G  ++A+EL   M    + PD V    +LSAC +   ++ G
Sbjct: 416 GLVQEAVELIEGMR---IPPDPVLWGTILSACKRHGLVDLG 453


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 352/627 (56%), Gaps = 49/627 (7%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           +G + +P  + S++K    +  +   K IH   ++T    +P+    L    A      +
Sbjct: 257 SGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYA--KCGDI 314

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           + AR  F+ IP  ++   + +I  Y+ S +  Q+F +FL+L+ +S   PNE++   V++A
Sbjct: 315 KDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS-VLPNEYSLSSVLQA 373

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
              +VQ   G+ IH   IK   E DLF+ N+L+ FYA C D+  +  +F  +   + VSW
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N+++ GF Q G  E                                         EALS+
Sbjct: 434 NTIVVGFSQSGLGE-----------------------------------------EALSV 452

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           F E+Q ++ +   + T+ SVL ACA   ++    QIH  ++K     +  +  SLID Y 
Sbjct: 453 FCEMQAAQ-MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 511

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG +  AL+VF  +  RD+  W+ +I+G+A++G   +AL+LF RM ++ V+ N +TF  
Sbjct: 512 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           +L  CS +GLV+ G   F+ M   +G+ P ++HYTC+V +LGRAG L++A++FI  +P  
Sbjct: 572 LLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA 631

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A VW ALL +C IH+NV L  ++   +LE+EP++    VLLSN+YA  G  D V+ LR
Sbjct: 632 PSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLR 691

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K MR  G++K PG S +E+ GEIH F  G   HP  + I + L+ +  +    GY+P+ +
Sbjct: 692 KSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDIN 751

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            +L  V++E  + + L +HSERLA+AYGL+   P  PIRI+KNLR C DCHT   +ISK+
Sbjct: 752 VVLHDVDKEQ-KTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKI 810

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             REI++RD  RFHHF  G CSC DYW
Sbjct: 811 VKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 181/406 (44%), Gaps = 64/406 (15%)

Query: 55  KQIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           + +H  ++R G     D + A+ L      G    L  AR +FD++P+ N+ ++ TL++A
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLN--MYGKLGPLASARRLFDRMPERNMVSFVTLVQA 136

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           ++   +   +  +F +L +   +  N+F    ++K A  +    +   +H    K   + 
Sbjct: 137 HAQRGDFEAAAALFRRLRWEG-HEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH 195

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           + F+ + LI  Y++C  ++ A  VF  I +KD V W +M+S + +    E A  ++ +M 
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMR 255

Query: 233 MENVKPDEVTMVAVLSAC-----------------------------------AKKRDLE 257
           +   KP+   + +VL A                                    AK  D++
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 315

Query: 258 FGRWPNEALSIFHELQLS--------KNVNPDEF----------------TFVSVLSACA 293
             R   E +     + LS         N N   F                +  SVL AC 
Sbjct: 316 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 375

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            +  +D G QIH    K G + + ++  +L+D Y KC ++D +L++F +++  +   W+T
Sbjct: 376 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 435

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           ++ GF+  G G EAL +F  MQ A++    VT+++VL AC+ +  +
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 481



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 147/352 (41%), Gaps = 71/352 (20%)

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-------FRVGQAIHG 163
           R +++ A  +Q     L  +   P  P   +F     A AR +Q        R G+A+HG
Sbjct: 29  RGFAAYAAALQWLEDELTSLAILPSVPGVDSF-----ACARQLQGCIARGDARGGRAVHG 83

Query: 164 MVIKSSFED--DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
            V++       DLF +N L++ Y   G LA A  +F  + ++++VS+ +++    Q G F
Sbjct: 84  HVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDF 143

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E A  L+R +                            RW        HE+        +
Sbjct: 144 EAAAALFRRL----------------------------RWEG------HEV--------N 161

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +F   ++L     + A  +   +H+   K G   N ++ + LID Y+ C  +  A  VF+
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN 221

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA--CSHSGLV 399
            +  +D  VW+ M++ ++   C   A  +FS+M+ +  KPN    T+VL A  C  S ++
Sbjct: 222 GIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVL 281

Query: 400 DEG-----RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            +G         N  EP  G          ++DM  + G + +A    E +P
Sbjct: 282 GKGIHGCAIKTLNDTEPHVG--------GALLDMYAKCGDIKDARLAFEMIP 325


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 344/623 (55%), Gaps = 57/623 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ-IPQ 100
           SL+ +  +++   Q H ++L +G L   P   ++     AL    +      +  + +P 
Sbjct: 14  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 73

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQFRVGQ 159
           P     N  +R  ++S  P +S ++    +  +    P+  +  F +KA+AR        
Sbjct: 74  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTV 133

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H +V++     D+ +  +L+  YA CGDLA A  VF  +  +DV +WNS+++G  QG 
Sbjct: 134 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG- 192

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-----QL 274
                                                     PN AL++FH L     +L
Sbjct: 193 ----------------------------------------TEPNLALALFHRLANSFQEL 212

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                P+E T V+VLSACAQ+G +  G+ +H   KK G+  N  +  SLIDMY+KCG+L 
Sbjct: 213 PSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLS 272

Query: 335 KALEVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +AL+VFH++K  D  +  ++  I   +M+G G +AL LF  M   +++P+ VT+  VLC 
Sbjct: 273 RALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEPDGVTYLAVLCG 331

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+HSGLVD+G   FN M     V P +KHY  +VD+LGRAG L EA + +  MP      
Sbjct: 332 CNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIV 387

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W  LLGA K+H  VELAE A + L EL     G  VLLSN+YA   +W +V  +R  MR
Sbjct: 388 LWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMR 447

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
            + ++K PG S  E++G +HKF+ G+  HP  +EIY  L++IV+R+   GY P  S++L 
Sbjct: 448 SNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLH 507

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            + EE+ ++ AL  HSE+LAIA+GLI+  P + +R++KNLR+CGDCH VAKLISK Y R 
Sbjct: 508 DIGEEE-KQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRV 566

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFH F  G CSC DYW
Sbjct: 567 IVIRDRARFHRFEDGQCSCRDYW 589


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 337/606 (55%), Gaps = 58/606 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTLIRAY 113
           Q H Q+ + G  F+P+  + L +    G+   ++ AR++F++       T  +N L+  Y
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSL--VDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
            S+++  ++ ++F Q+  N    P N  T   +I A    +   +G ++H   +K  F+ 
Sbjct: 128 VSNSKCSEAVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDS 185

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D+ + N  I  Y  CG +  A  +F  +  K ++SWN+M+SG+ Q G     +ELYR M+
Sbjct: 186 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 245

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           M                                            V+PD  T V VLS+C
Sbjct: 246 M------------------------------------------NGVHPDPVTLVGVLSSC 263

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A LGA  +G ++  K++  G   N +L  +LI+MY +CGNL KA  VF  +  R +  W+
Sbjct: 264 ANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWT 323

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +I G+ M+G G  A+ LF  M  + ++P+   F  VL ACSH+GL D+G  +F  M+  
Sbjct: 324 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRN 383

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           Y + PG +HY+CMVD+LGRAG L EA   IE MPI P  +VWGALLGACKIH+NVELAE 
Sbjct: 384 YQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAEL 443

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   ++ELEPEN G  VLLSNIY+       V  +R  M+   LKK+PGCS +E+ G +H
Sbjct: 444 AFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVH 503

Query: 533 KFLAGESSHPLCKEIYSKLDEIVA-RLKSFGYVPNRSHLLQLVEEEDVQE--QALNLHSE 589
            F+ G+ +H    EIY  L+E+ A  ++ FG  P + +      EE  ++    + +HSE
Sbjct: 504 PFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK-PEKDN-----REESNKDGFTRVGVHSE 557

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LA+A+GL++      + I+KNLR+C DCH   K++SK+ +R++ +RD  RFHHFR G+C
Sbjct: 558 KLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSC 617

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 618 SCKDYW 623



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 176/420 (41%), Gaps = 51/420 (12%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WNT +R  +   + +Q+  ++ Q++ +    PN FTFPF +K+ A L    +G   HG +
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDR-PNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV--MIGKKDVVSWNSMISGFVQGGFFEK 223
            K     + F+   LI  Y     +  A  VF      +K  V +N+++SG+V      +
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+ L+R+M  E V  + V                                          
Sbjct: 136 AVLLFRQMNEEGVPVNSV------------------------------------------ 153

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T + ++ AC     +++G  +H    K G   +  +    I MY KCG+++ A ++F  +
Sbjct: 154 TLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEM 213

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             + +  W+ M++G+A  G     L+L+  M    V P+ VT   VL +C++ G    G 
Sbjct: 214 PVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 273

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
               +++   G          +++M  R G L +A    + MP     S W A++G   +
Sbjct: 274 EVEFKIQ-ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS-WTAIIGGYGM 331

Query: 464 HENVELAEYACSHLLE--LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           H + E+A      ++   +EP+    + +LS   +  G  D   E  K M+    + EPG
Sbjct: 332 HGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC-SHAGLTDQGLEYFKMMK-RNYQLEPG 389


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 331/569 (58%), Gaps = 46/569 (8%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +EY+  +FD++   +  +W T+I  Y+ S+  I++  IF +         +      +++
Sbjct: 417 IEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFRE-AQKEGIKVDPMMIGSILE 475

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A + L    + + +H   I++   D L + N +I  Y  CG++  +  +F  + +KD+V+
Sbjct: 476 ACSGLETILLAKQLHCYAIRNGLLD-LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVT 534

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W SMI+ +   G                                           NEAL 
Sbjct: 535 WTSMINCYANSGLL-----------------------------------------NEALV 553

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+Q S +V PD    VS+L A   L ++  G ++H  + ++   +   + +SL+DMY
Sbjct: 554 LFAEMQ-STDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMY 612

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           + CG+L  AL+VF+ VK +D+ +W+ MI    M+G G++A+DLF RM +  V P+ V+F 
Sbjct: 613 SGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFL 672

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSHS LV+EG+ + + M   Y + P  +HY C+VD+LGR+G  +EA EFI+ MP+
Sbjct: 673 ALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPL 732

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P + VW +LLGAC++H+N ELA  A + LLELEP+N G  VL+SN++A+ GKW+N  E+
Sbjct: 733 KPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEV 792

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL-KSFGYVPN 566
           R  +   GL+K+P CS IE+   +H F   ++SH   + I  KL EI  RL K  GY  +
Sbjct: 793 RARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTED 852

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  V EE+ +   L+ HSERLAI++GLI+  P  P+RI KNLRVCGDCH   KL+S
Sbjct: 853 TRSVLHDVSEEE-KVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVS 911

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KL++R+I++RD  RFHHF GG+CSC D+W
Sbjct: 912 KLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 223/523 (42%), Gaps = 101/523 (19%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAR 92
           Q H   V  L+   K + Q  Q+H   + TG     D + A+KL      G    +  AR
Sbjct: 58  QEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLF--MYGKCGRVADAR 115

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAA 150
            +FD +    +++WN LI AY SS    ++  ++  ++L   S   P+  T   V+KA+ 
Sbjct: 116 LLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASG 175

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIGKKDVVSWN 209
                R G  +HG+ +K   +   F++N+LI  YA CG L  A  VF +M   +DV SWN
Sbjct: 176 VEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWN 235

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR--------- 260
           SMISG +Q G F +A++L+R M+   +  +  T V VL  C +   L  GR         
Sbjct: 236 SMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS 295

Query: 261 -------------------WPNEALSIFHELQ---------------------------- 273
                                + AL +F E+                             
Sbjct: 296 GSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFIS 355

Query: 274 --LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
             L     PD    VS+ SA   LG +  G ++HA   KQ +  +  +  +L+DMY KC 
Sbjct: 356 EMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCR 415

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            ++ +  VF  ++ +D   W+T+I  +A      EAL++F   Q+  +K + +   ++L 
Sbjct: 416 YIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILE 475

Query: 392 ACS----------------HSGLVDEGRMFFNQMEPVYGVVPGVKH-------------- 421
           ACS                 +GL+D   +  N++  +YG    V H              
Sbjct: 476 ACSGLETILLAKQLHCYAIRNGLLD--LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIV 533

Query: 422 -YTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGA 460
            +T M++    +GLL+EA+    +M    + P +    ++LGA
Sbjct: 534 TWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 38  PHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           P  + S+++ C  ++ +   KQ+H   +R GL  D    +++      G    + ++ +M
Sbjct: 467 PMMIGSILEACSGLETILLAKQLHCYAIRNGLL-DLVVKNRIID--IYGECGEVYHSLKM 523

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ + Q ++ TW ++I  Y++S    ++ ++F ++  ++   P+      ++ A   L  
Sbjct: 524 FETVEQKDIVTWTSMINCYANSGLLNEALVLFAEM-QSTDVQPDSVALVSILGAIGGLSS 582

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ +HG +I+ +F  +  I +SL+  Y+ CG L+ A  VF  +  KD+V W +MI+ 
Sbjct: 583 LAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINA 642

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
               G  ++AI+L++ M    V PD V+ +A+L AC+  + +  G+
Sbjct: 643 TGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGK 688



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 22/196 (11%)

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLIDMYTKCGNLDKA 336
           +P +  +  VL   A   A+  GVQ+HA     G     + +L T L+ MY KCG +  A
Sbjct: 55  SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADA 114

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ---EAKVKPNAVTFTNVLCAC 393
             +F  + SR VF W+ +I  +   G   EAL ++  M+    + V P+  T  +VL A 
Sbjct: 115 RLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA- 173

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKH--------YTCMVDMLGRAGLLDEAVEFIEKM 445
             SG+  +GR        V+G+   VKH           ++ M  + G+LD A+   E M
Sbjct: 174 --SGVEGDGRCGCE----VHGL--AVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELM 225

Query: 446 PIVPGASVWGALLGAC 461
                 + W +++  C
Sbjct: 226 HDGRDVASWNSMISGC 241


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/738 (32%), Positives = 375/738 (50%), Gaps = 129/738 (17%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SL+K C   +N  Q K++H  +L+T    + + ++ L T  A     +L YA  +FD IP
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLIT--AYYKLGNLAYAHHVFDHIP 67

Query: 100 QPNLYT-------------------------------WNTLIRAYSSSAEPIQSFMIFLQ 128
           QPNL++                               WN  I  Y++      +  ++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI-- 186
           ++ ++    N  TF  ++   ++     +G+ I+G ++K  F  D+F+ + L+  Y    
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 187 -----------------------------CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
                                        CG +  +  +F  + ++D +SW  MI+G +Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA-------------------------- 251
            G   +A++++REM +     D+ T  +VL+AC                           
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 252 --------------KKRDLEFGRWPN--------------------EALSIFHELQLSKN 277
                         K  +  F R P                     EA+ IF E+Q    
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQ-RNG 366

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD+FT  SV+S+CA L +++ G Q H +    G+     ++ +LI +Y KCG+ + + 
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  +  RD   W+ ++AG+A +G   E + LF RM    +KP+ VTF  VL ACS +G
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV++G  +F  M   +G++P V H TC++D+LGRAG L+EA  FI  MP  P    W  L
Sbjct: 487 LVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATL 546

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L +C++H ++E+ ++A   L+ LEP+N  + VLLS++YA  GKWD V++LR+ MR   ++
Sbjct: 547 LSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVR 606

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPG S I+  G++H F A + S P   +IY++L+++  ++   GYVP+ S +L  VEE 
Sbjct: 607 KEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEES 666

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + + + LN HSE+LAIA+GLI V P  PIR++KNLRVCGDCH   K ISK+  REIL+RD
Sbjct: 667 E-KIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRD 725

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFH F+ G CSC D+W
Sbjct: 726 AVRFHLFKDGTCSCGDFW 743



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 33/194 (17%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + S+L  C +        ++H  + K   +   +L+ +LI  Y K GNL  A  VF  + 
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 345 SRDVFVWSTM-------------------------------IAGFAMYGCGREALDLFSR 373
             ++F W+T+                               I+G+A YG   +A+ ++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 374 M-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           M ++A +  N +TF+ +L  CS    VD GR    Q+   +G    V   + +VDM  + 
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILK-FGFGSDVFVGSPLVDMYTKL 186

Query: 433 GLLDEAVEFIEKMP 446
           GL+ +A  + ++MP
Sbjct: 187 GLIYDAKRYFDEMP 200


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 330/587 (56%), Gaps = 64/587 (10%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +FD++P  ++  W  ++  Y  +    ++  +F ++                     
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-------------------- 201

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                               + ++    ++I  YA  G++ +A  +F ++ +++ VSW +
Sbjct: 202 --------------------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTA 241

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMV---------AVLSACAKKRDLEFGRW 261
           M+ G++Q G  E A EL+  M    V      MV         A  +   K R+ + G W
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTW 301

Query: 262 PN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                         EALS F E+ L + V P+  + +S+L+ CA L  +D G ++HA M 
Sbjct: 302 SAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           +    ++ +  ++LI MY KCGNLDKA  VFHT + +D+ +W++MI G+A +G G +AL 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +F  M+ A + P+ +T+   L ACS++G V EGR  FN M     + PG +HY+CMVD+L
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           GR+GL++EA + I+ MP+ P A +WGAL+GAC++H N E+AE A   LLELEP N G  V
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYV 540

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIY 548
           LLS+IY   G+W++ S++RK +    L K PGCS IE +  +H F +G+  +HP    I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
             L+++   L   GY  + S +L  ++EE  +  +L  HSER A+AYGL+ +    PIR+
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQ-KSHSLRYHSERQAVAYGLLKIPEGMPIRV 659

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +KNLRVCGDCH+  KLI+K+ +REI+LRD  RFHHF+ G CSC DYW
Sbjct: 660 MKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 110/202 (54%), Gaps = 11/202 (5%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS--PYFPN 138
             G    ++ A+ +F+++ + +  TW+ +I+AY  +   +++   F ++++    P +P+
Sbjct: 276 GFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPS 335

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
             +   ++   A L     G+ +H  +++ SF+ D+F  ++LI  Y  CG+L  A  VF 
Sbjct: 336 VIS---ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
               KD+V WNSMI+G+ Q G  E+A+ ++ +M +  + PD +T +  L+AC+    ++ 
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 259 GRWPNEALSIFHELQLSKNVNP 280
           GR       IF+ + ++ ++ P
Sbjct: 453 GR------EIFNSMTVNSSIRP 468



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 26/282 (9%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           N+ I   A  G++  A   F  +  +   S+N++++G+ +    + A+ L+R M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            D  +  A++S  + +R       P+ A ++      S    P   +F S+L    + G 
Sbjct: 78  -DLASYNALISGLSLRRQT----LPDAAAAL-----ASIPFPPSVVSFTSLLRGYVRHGL 127

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +   +++  +M ++       L   L+D     G +++A  +F  +  RDV  W+ M++G
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSG 183

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G   EA  LF  M     K N V++T ++   + +G V+  R  F  M     V  
Sbjct: 184 YCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-- 237

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
               +T M+    +AG +++A E    MP  P A+    ++G
Sbjct: 238 ---SWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 51/228 (22%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREM 94
           V S++  C  +  L   +++H  MLR     D ++ S L T    C      +L+ A+ +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-----NLDKAKRV 390

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARL 152
           F      ++  WN++I  Y+      Q+  IF  ++L   S   P+  T+   + A +  
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMS---PDGITYIGALTACSYT 447

Query: 153 VQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            + + G+ I + M + SS      I     H+           C+  ++G+         
Sbjct: 448 GKVKEGREIFNSMTVNSS------IRPGAEHY----------SCMVDLLGRS-------- 483

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
                  G  E+A +L + M +E   PD V   A++ AC   R+ E  
Sbjct: 484 -------GLVEEAFDLIKNMPVE---PDAVIWGALMGACRMHRNAEIA 521


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 371/633 (58%), Gaps = 39/633 (6%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           ++  + +  +ML+     D +S + L +  A     S++  +  FD++P  +  ++NT I
Sbjct: 74  LRDAQNLFDKMLKR----DIFSWNALLS--AYAKSGSIQNLKATFDRMPFRDSVSYNTTI 127

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             +S ++ P +S  +F ++     + P E+T   ++ A+A+L   R G+ IHG +I  +F
Sbjct: 128 AGFSGNSCPQESLELFKRM-QREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNF 186

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
             ++FI N+L   YA CG++  A  +F  + KK++VSWN MISG+ + G  EK I L  +
Sbjct: 187 LGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ 246

Query: 231 MEMENVKPDEVTMVAVLSA---CA------------KKRDL-----------EFGRWPNE 264
           M +    PD+VTM  +++A   C             K++D+           + GR   +
Sbjct: 247 MRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR-EED 305

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F+E+ L +++ PD +T  SV+S+CA+L ++  G  +H K    G+  N  ++++LI
Sbjct: 306 ALLLFNEMLL-EHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALI 364

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY+KCG +D A  VF+ + +R+V  W+ MI G A  G  ++AL+LF  M + K KP+ V
Sbjct: 365 DMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNV 424

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF  +L AC H   +++G+ +F+ +   +G+ P + HY CMV++LGR G +++AV  I+ 
Sbjct: 425 TFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKN 484

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           M   P   +W  LL  C    ++  AE A  HL EL+P      ++LSN+YA  G+W +V
Sbjct: 485 MAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDV 544

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + +R  M+   +KK  G S IE++ E+H+F + + +HP  ++IY KL+ ++ +L+  G+ 
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFT 604

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPS--QPIRIVKNLRVCGDCHTVA 622
           PN + +L  V  ED + +++  HSE+LA+A+GLI  +P+   PIRI+KN+R+C DCH   
Sbjct: 605 PNTNLVLHDV-GEDEKFKSICFHSEKLALAFGLIK-KPNGISPIRIIKNIRICNDCHEFM 662

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K  S++  R+I+LRD  RFHHF  G CSC D W
Sbjct: 663 KFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D F+ N L+H YA  G L  A  +F  + K+D+ SWN+++S + + G  +     +  M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
             +      T+         +  LE          +F  +Q  +   P E+T VS+L+A 
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLE----------LFKRMQ-REGFEPTEYTIVSILNAS 165

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           AQL  +  G QIH  +  +    N ++  +L DMY KCG +++A  +F  +  +++  W+
Sbjct: 166 AQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWN 225

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            MI+G+A  G   + + L  +M+ +   P+ VT + ++ A    G VDE R  F++ +  
Sbjct: 226 LMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE- 284

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGAC 461
                 +  +T M+    + G  ++A+    +M    I P +    +++ +C
Sbjct: 285 ----KDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/641 (35%), Positives = 346/641 (53%), Gaps = 73/641 (11%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSS--------------- 87
           L + C+ ++ L+Q+H     +G   D ++A+ L    A LG  ++               
Sbjct: 112 LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 171

Query: 88  -------------LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
                        L  AR++FD++P+ N+ TWN ++   ++     +S   FL +     
Sbjct: 172 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 231

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
           + P+EF    V +  A L     G+ +H  V++S  + D+ + +SL H Y  CG L    
Sbjct: 232 H-PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGE 290

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            V  M+    +VS N++I+G  Q G  E A+E +  M                       
Sbjct: 291 AVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMR---------------------- 328

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                               S  V  D  TFVS +S+C+ L A+  G QIH ++ K G+ 
Sbjct: 329 --------------------SVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 368

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               + T L+ MY++CG L  +  VF      D F+ S MI+ +  +G G++A++LF +M
Sbjct: 369 KVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 428

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                +P+ VTF  +L ACSHSGL +EG   F  M   YG+ P VKHYTC+VD+LGR+G 
Sbjct: 429 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGC 488

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA   I  MP+ P   +W  LL ACK  +N ++AE     ++EL+P +  + VLLSNI
Sbjct: 489 LDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNI 548

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
            A + +W +VSE+RK MR + ++KEPG S +E+ G IH+F  G+ SHP  KEI   L+E+
Sbjct: 549 RATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEM 608

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +A+++  GY P+ S +L  +E+E+ +E +L+ HSE+LAIA+  +S+    PIR++KNLRV
Sbjct: 609 MAKIRQCGYSPDMSMVLHDMEDEE-KEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRV 667

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH   KL+S++  REI++RD  RFHHF+ G CSC DYW
Sbjct: 668 CDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F  +  AC  L  +    Q+HA     G   + +    L+  Y   G+L  A E+F  + 
Sbjct: 109 FSHLFRACRALRPLR---QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 165

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            R+V  W+ +  G+   G    A  LF  M E     N  T+  ++   ++ G  +E   
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPE----RNVATWNAMVAGLTNLGFDEESLG 221

Query: 405 FFNQME 410
           FF  M 
Sbjct: 222 FFLDMR 227


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/606 (36%), Positives = 343/606 (56%), Gaps = 46/606 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  LK++H   L+     +    +  F   +     SL YA  +F  I    + +WN LI
Sbjct: 408 LPNLKELHCYSLKQEFVHNNELVANAFVA-SYAKCGSLSYAHRVFCSIRSKTVNSWNALI 466

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             YS S++P  S   + Q+  +S   P+ FT   ++ A +++   ++G+ +HG++I++  
Sbjct: 467 GGYSQSSDPRLSLDAYFQM-KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRL 525

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E D F+  SL+  Y  CG+L+ A+ +F  +  K +VSWN+M++G++Q GF          
Sbjct: 526 ERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGF---------- 575

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                          P  ALS+F ++ L   V P E + +SV  
Sbjct: 576 -------------------------------PERALSLFRQMVL-YGVQPCEISMMSVFG 603

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC+ L ++ +G + H    K  ++ N ++  S+IDMY K G++ ++ +VF+ +K R V  
Sbjct: 604 ACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVAS 663

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+ G+ ++G  +EA+ LF  MQ     P+ +TF  VL AC+HSGLV EG  + +QM+
Sbjct: 664 WNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMK 723

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF-IEKMPIVPGASVWGALLGACKIHENVEL 469
            ++G+ P +KHY C++DML RAG LDEA++   E+M   PG  +W  LL +C+IH+N+E+
Sbjct: 724 TLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEM 783

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            E   + L   EPE     VLLSN+YA +GKWD V ++R+ M+   L+K+ GCS IE+NG
Sbjct: 784 GEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNG 843

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589
           ++  F+AGESS    +EI S    +   +   GY P+ S +   + EE+  EQ L  HSE
Sbjct: 844 KVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQ-LRGHSE 902

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LAI YGLI       +R+ KNLR+C DCH  AKLISK+  REI++RD  RFHHF+ G C
Sbjct: 903 KLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFC 962

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 963 SCGDYW 968



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 48/309 (15%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           +R +FD + + NL+ WN +I +YS +        +F++++  S   P+ FTFP V+KA A
Sbjct: 136 SRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACA 195

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            + + +VG A+HG+V+K+   +D+F+SN+L+ FY   G ++ A  VF ++ ++++VSWNS
Sbjct: 196 GVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNS 255

Query: 211 MISGFVQGGFFEKAIELYREMEMEN----VKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           MI  F   G  E+   L  +M  ++      PD  T+  VL  CA  RD E G       
Sbjct: 256 MIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCA--RDREIG------- 306

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                                            +G  +H    K  +     +  +L+DM
Sbjct: 307 ---------------------------------VGKGVHGLAMKLSLDKEVVVNNALMDM 333

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE--AKVKPNAV 384
           Y+KCG ++ A  +F    +++V  W+TM+ GF+  G   +  DL  +M      ++ + V
Sbjct: 334 YSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEV 393

Query: 385 TFTNVLCAC 393
           T  N +  C
Sbjct: 394 TILNAVPVC 402



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 175/360 (48%), Gaps = 51/360 (14%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           ++K C  + +++    +H  +++T L  D + ++ L +    GT  S+  A  +F  +P+
Sbjct: 190 VVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVS--FYGTNGSVSDALRVFKIMPE 247

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS---PYFPNEFTFPFVIKAAARLVQFRV 157
            NL +WN++IR +S +    + F++  Q++       + P+  T   V+   AR  +  V
Sbjct: 248 RNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGV 307

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG+ +K S + ++ ++N+L+  Y+ CG +  A  +F +   K+VVSWN+M+ GF  
Sbjct: 308 GKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSA 367

Query: 218 GGFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            G   K  +L R+M     +++ DEVT++  +  C ++  L     PN       EL   
Sbjct: 368 AGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVL-----PN-----LKELH-- 415

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                           C  L             K++ +  N  +  + +  Y KCG+L  
Sbjct: 416 ----------------CYSL-------------KQEFVHNNELVANAFVASYAKCGSLSY 446

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF +++S+ V  W+ +I G++     R +LD + +M+ + + P+  T  ++L ACS 
Sbjct: 447 AHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQ 506



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 165/353 (46%), Gaps = 25/353 (7%)

Query: 41  VFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREM 94
           V SL+  C  IK LK   ++H  ++R  L  D +   S   L+  C       L  A  +
Sbjct: 497 VCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCG-----ELSTAHVL 551

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD +    L +WNT++  Y  +  P ++  +F Q+V      P E +   V  A + L  
Sbjct: 552 FDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQ-PCEISMMSVFGACSLLPS 610

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R+G+  HG  +K   ED+ FI+ S+I  YA  G +  ++ VF  + ++ V SWN+M+ G
Sbjct: 611 LRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMG 670

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +   G  ++AI+L+ EM+     PDE+T + VL+AC            +E L+   +++ 
Sbjct: 671 YGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTAC------NHSGLVHEGLTYLDQMKT 724

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK--MKKQGIKL-NCYLTTSLIDMYTKCG 331
              +NP    +  V+    + G +D  ++I  +   ++ G+ + N  L++  I    + G
Sbjct: 725 LFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMG 784

Query: 332 -NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
             +   L V    K  +  + S + AG   +    E   +  RM+E  ++ +A
Sbjct: 785 EKIAAKLFVSEPEKPENYVLLSNLYAGSGKWD---EVRKVRQRMKEMSLRKDA 834



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 142/332 (42%), Gaps = 52/332 (15%)

Query: 147 KAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +A+ R    ++G+ IH +V +S+   +D  +   +I  Y++CG    +  VF  + KK++
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
             WN++IS + +   +   +E++ +M         +T   +L                  
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKM---------ITESGLL------------------ 181

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                         PD FTF  V+ ACA +  + +G+ +H  + K  +  + +++ +L+ 
Sbjct: 182 --------------PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVS 227

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK----VKP 381
            Y   G++  AL VF  +  R++  W++MI  F+  G   E   L  +M E        P
Sbjct: 228 FYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTP 287

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +  T   VL  C+    +  G+   + +     +   V     ++DM  + G +++A + 
Sbjct: 288 DVATLATVLPVCARDREIGVGKG-VHGLAMKLSLDKEVVVNNALMDMYSKCGCINDA-QV 345

Query: 442 IEKMPIVPGASVWGALLG----ACKIHENVEL 469
           I K+        W  ++G    A  IH+  +L
Sbjct: 346 IFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDL 377



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL-----SACAQLGAMDIGVQIHAKMKKQ 311
           E G  P   L +  E    +  + D F  +         A  +   + +G +IH  + + 
Sbjct: 51  ETGNPPQGVLQVIEEFDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQLVSES 110

Query: 312 G-IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
             +  +  L T +I MY+ CG+ D +  VF  ++ +++F W+ +I+ ++        L++
Sbjct: 111 ARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEM 170

Query: 371 FSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           F +M  E+ + P+  TF  V+ AC+    V  G +  + +     +V  V     +V   
Sbjct: 171 FVKMITESGLLPDNFTFPCVVKACAGVSEVQVG-LAVHGLVVKTRLVEDVFVSNALVSFY 229

Query: 430 GRAGLLDEAVEFIEKMP 446
           G  G + +A+   + MP
Sbjct: 230 GTNGSVSDALRVFKIMP 246


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 297/464 (64%), Gaps = 44/464 (9%)

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A+ +F  +  +DVVSWNSM++ + Q                                C K
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQ--------------------------------CGK 194

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
                    PNEAL++F +++ +  V P E T VS+LSACA LGA+D G+ +H  +    
Sbjct: 195 ---------PNEALALFDQMR-AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 244

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           I++N  + T+L+DMY KCG +  A +VF+ ++S+DV  W+T+IAG A++G  +EA  LF 
Sbjct: 245 IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFK 304

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
            M+EA V+PN +TF  +L ACSH+G+VDEG+   + M   YG+ P V+HY C++D+L RA
Sbjct: 305 EMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARA 364

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
           GLL+EA+E I  MP+ P     GALLG C+IH N EL E     L+ L+P + G  +LLS
Sbjct: 365 GLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLS 424

Query: 493 NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
           NIYA   KWD+  ++R  M+V+G+ K PG S IE+ G +H+F+AG+ SHP   +IY KL+
Sbjct: 425 NIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLN 484

Query: 553 EIVARLKS-FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           EI  RLKS  G+  +   +L  +EEED +E AL +HSE+LAIAYGL+ ++  + IRIVKN
Sbjct: 485 EIHTRLKSAIGHSADTGDVLLDMEEED-KEHALPVHSEKLAIAYGLLHLDSKEAIRIVKN 543

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LRVC DCH V KLISK+Y REI++RDR RFHHF  G CSC+D+W
Sbjct: 544 LRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
           TF   + A  +F ++P  ++ +WN+++  Y+   +P ++  +F Q+       P E T  
Sbjct: 160 TFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVV 218

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            ++ A A L     G  +H  +  +  E +  +  +L+  YA CG +++A  VF  +  K
Sbjct: 219 SLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK 278

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           DV++WN++I+G    G  ++A  L++EM+   V+P+++T VA+LSAC+
Sbjct: 279 DVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACS 326


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/675 (34%), Positives = 364/675 (53%), Gaps = 67/675 (9%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTG---LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           V S++     +   +++H Q ++ G     F   S   ++  C L     +E AR +F  
Sbjct: 211 VLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL-----VEEARVVFCG 265

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   ++ +WNTL+     +   +++  +F     +S     + T+  VIK  A + Q  +
Sbjct: 266 METRDMVSWNTLMAGLVLNGHDLEALQLFHD-SRSSITMLTQSTYATVIKLCANIKQLGL 324

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNSMISGFV 216
            + +H  V+K  F     +  +L+  Y+  G L  A  +F+++ G ++VVSW +MI+G +
Sbjct: 325 ARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-----------KRDLE-------- 257
           Q G    A  L+  M  + V P++ T   +L+A              K + E        
Sbjct: 385 QNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTA 444

Query: 258 ----FGRWPN--EALSIFHELQLSKNVN------------------------------PD 281
               + +  N  EALSIF  +     V+                              P+
Sbjct: 445 LLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPN 504

Query: 282 EFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           EFT  SV+ ACA     +D+G Q HA   K        ++++L+ MY + G+++ A  +F
Sbjct: 505 EFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIF 564

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
                RD+  W++M++G+A +G  ++ALD+F +M+   ++ + VTF +V+  C+H+GLV+
Sbjct: 565 ERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVE 624

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG+ +F+ M   YG+ P ++HY CMVD+  RAG LDEA+  IE M    G  VW  LLGA
Sbjct: 625 EGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGA 684

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CK+H+NVEL + A   LL LEP +    VLLSNIY+  GKW    E+RK M    +KKE 
Sbjct: 685 CKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEA 744

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCS I++  ++H F+A + SHPL ++IY+KL  +  +LK  GY P+ S  L  V EE  +
Sbjct: 745 GCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQ-K 803

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           E  L +HSERLA+A+GLI+  P  P+ I KNLRVCGDCHTV K++SK+ +REI++RD  R
Sbjct: 804 EAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSR 863

Query: 641 FHHFRGGNCSCMDYW 655
           FHHF  G CSC D+W
Sbjct: 864 FHHFNSGVCSCGDFW 878



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 167/394 (42%), Gaps = 54/394 (13%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR+ FD+IP  N  T +  +  ++      Q+   FL +               V+K   
Sbjct: 57  ARQAFDEIPHRN--TLDHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 151 RLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
            +    +G+ +HG+ I+   +  D+ +  SL+  Y     +     VF  + K++VV+W 
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           S+++G++Q G     +EL+  M  E V                        WPN      
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGV------------------------WPNS----- 205

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                         TF SVLS  A  G +D+G ++HA+  K G     ++  SL++MY K
Sbjct: 206 -------------VTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAK 252

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG +++A  VF  +++RD+  W+T++AG  + G   EAL LF   + +       T+  V
Sbjct: 253 CGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATV 312

Query: 390 LCACSHSGLVDEGRMFFNQMEP----VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  C++   +   R   + +       YG V      T ++D   +AG L  A++    M
Sbjct: 313 IKLCANIKQLGLARQLHSSVLKRGFHSYGNV-----MTALMDAYSKAGQLGNALDIFLLM 367

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
                   W A++  C  + +V LA    S + E
Sbjct: 368 SGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 343/577 (59%), Gaps = 26/577 (4%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           ALG  +    AR +FD+IP P+  ++NTL+  + +S +   +  +F  +        +  
Sbjct: 110 ALGRLAD---ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVV 161

Query: 141 TFPFVIKAAARLVQFRVGQAIH-GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           ++  ++   ++       +A+   M +++S        N+++  +A   D++ A   F  
Sbjct: 162 SWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVS-----WNAMVSGFACSRDMSAAEEWFRN 216

Query: 200 IGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
             +K D V W +M+SG++  G   KAIE +  M + N+    V+  AV++   K      
Sbjct: 217 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL----VSWNAVVAGYVKNSH--- 269

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
               ++AL +F  +    NV P+  T  SVL  C+ L A+  G QIH    K  +  N  
Sbjct: 270 ---ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT 326

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           + TSL+ MY KCG+L  A ++F  + +RDV  W+ MI+G+A +G G+EA++LF RM++  
Sbjct: 327 VGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 386

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           V+PN +TF  VL AC H+GL D G   F  M+ +YG+ P V HY+CMVD+L RAG L+ A
Sbjct: 387 VEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 446

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
           V+ I  MP  P  S +G LL AC++++N+E AE A   L+E +P++ GA V L+NIYA  
Sbjct: 447 VDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGA 506

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
            +WD+VS +R+ M+ + + K PG S IE+ G +H+F + +  HP    I+ KL ++  R+
Sbjct: 507 NQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERM 566

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K+ GYVP+   +L  V+E  ++ Q L  HSE+LAI++GLIS  P   +RI KNLRVCGDC
Sbjct: 567 KAMGYVPDLDFVLHDVDET-LKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDC 625

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           H  AK+ISK+ +REI+LRD  RFHHFRGG+CSC DYW
Sbjct: 626 HNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR--EALDLFSR 373
            C L+T  +    + G+L  A E F +   +    ++ ++AG+A    GR  +A  LF R
Sbjct: 65  TCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYAR-ALGRLADARHLFDR 123

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           +      P+AV++  +L     SG  D  R  F  M PV  VV     +  MV  L ++G
Sbjct: 124 IP----TPDAVSYNTLLSCHFASGDADGARRLFASM-PVRDVVS----WNTMVSGLSKSG 174

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            ++EA      MP+    S W A++       ++  AE
Sbjct: 175 AVEEAKAVFLAMPVRNSVS-WNAMVSGFACSRDMSAAE 211


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 359/659 (54%), Gaps = 65/659 (9%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH   L++  F D Y A+ L    A      +E A  +F  +   +  +WNTL+     +
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYA--KCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
            E  +  + + + + NS   P++ +   +I A+ R      G+ +H   I++  + ++ I
Sbjct: 328 -ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQI 386

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N+LI  YA C  +      F  + +KD++SW ++I+G+ Q     +AI L+R+++++ +
Sbjct: 387 GNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGM 446

Query: 237 KPDEVTMVAVLSACAK---------------KRDL-------------------EFGR-- 260
             D + + +VL AC+                KRDL                   ++ R  
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRA 506

Query: 261 -----------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                      W            P EAL +F+ L+ + N+ PD    +S LSA A L +
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT-NIQPDSIAIISALSATANLSS 565

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +  G +IH  + ++G  L   + +SL+DMY  CG ++ + ++FH+VK RD+ +W++MI  
Sbjct: 566 LKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINA 625

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
             M+GCG EA+ LF +M +  V P+ +TF  +L ACSHSGL+ EG+ FF  M+  Y + P
Sbjct: 626 NGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEP 685

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
             +HY CMVD+L R+  L+EA +F+  MPI P + VW ALLGAC IH N EL E A   L
Sbjct: 686 WPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKEL 745

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
           L+ + +N G   L+SNI+A  G+W++V E+R  M+ +GLKK PGCS IEV+ +IH F+A 
Sbjct: 746 LQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMAR 805

Query: 538 ESSHPLCKEIYSKLDEIVARL-KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           + SHP   +IY KL +    L K  GY+     +   V EE+ + Q L  HSERLA+ YG
Sbjct: 806 DKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEE-KTQMLYRHSERLALGYG 864

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L+       IRI KNLR+C DCHT  K+ S++  R +++RD  RFHHF  G CSC D+W
Sbjct: 865 LLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 59/390 (15%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL-- 76
           L  HP  T   + + H      +  L    K + Q +Q+H ++L++ L    + A+KL  
Sbjct: 34  LSTHPLATPSRLEHAHS----LLLDLCVAVKALPQGQQLHARLLKSHL--SAFLATKLLH 87

Query: 77  -FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
            +  C      SL+ A ++FD++ +  ++TWN ++ A+ SS + +++  ++ ++      
Sbjct: 88  MYEKCG-----SLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA 142

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             +  TFP V+KA   L + R+G  IHG+ +K  F + +F+ N+LI  Y  CGDL  A  
Sbjct: 143 I-DACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 196 VF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
           +F  +M+ K+D VSWNS+IS  V  G                              C   
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEG-----------------------------KCL-- 230

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                     EALS+F  +Q    V  + +TFV+ L        + +G+ IH    K   
Sbjct: 231 ----------EALSLFRRMQ-EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNH 279

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
             + Y+  +LI MY KCG ++ A  VF ++  RD   W+T+++G       R+AL+ F  
Sbjct: 280 FADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRD 339

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           MQ +  KP+ V+  N++ A   SG +  G+
Sbjct: 340 MQNSAQKPDQVSVLNLIAASGRSGNLLNGK 369



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 13/220 (5%)

Query: 38  PHPVFSLIKQCKNIKQ---LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL---EYA 91
           P  + S+++ C  +K    +++IH      G  F    A  +     +  +  +   +YA
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIH------GYVFKRDLADIMLQNAIVNVYGEVGHRDYA 503

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R  F+ I   ++ +W ++I     +  P+++  +F  L   +   P+       + A A 
Sbjct: 504 RRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL-KQTNIQPDSIAIISALSATAN 562

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           L   + G+ IHG +I+  F  +  I++SL+  YA CG +  +  +F  + ++D++ W SM
Sbjct: 563 LSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSM 622

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           I+     G   +AI L+++M  ENV PD +T +A+L AC+
Sbjct: 623 INANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACS 662


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/674 (35%), Positives = 366/674 (54%), Gaps = 73/674 (10%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREMFDQ 97
           +++ C  I  L   +++H  ++R G   D    + L T    C       ++ AR +FD+
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG-----DVKSARLLFDR 256

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ ++ +WN +I  Y  +    +   +F  +       P+  T   VI A   L   R+
Sbjct: 257 MPRRDIISWNAMISGYFENGMGHEGLKLFFAM-RGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  VI + F  D+ + NSL   Y   G    A  +F  +  KD+VSW +MISG+  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEY 375

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------------------ 259
               EKAI+ YR M+ ++VKPDE+T+ AVLSACA   DL+ G                  
Sbjct: 376 NFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435

Query: 260 -----------RWPNEALSIFHEL-----------------------------QLSKNVN 279
                      +  ++AL IFH +                             Q+   + 
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMTLQ 495

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           P+  T  + L+ACA++GA+  G +IHA + + G+ L+ +L  +L+DMY +CG ++ A   
Sbjct: 496 PNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQ 555

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F++ K +DV  W+ ++ G++  G G   ++LF RM +A+V+P+ +TF ++LC C  S +V
Sbjct: 556 FNSQK-KDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMV 614

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            +G M+F++ME  YGV P +KHY C+VD+LGRAG L EA +FI+KMP+ P  +VWGALL 
Sbjct: 615 RQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLN 673

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH N++L E +   + EL+  + G  +LL N+YA  GKW  V+++R+ M+ +GL  +
Sbjct: 674 ACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD 733

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
            GCS +EV G++H FL+ +  HP  KEI + LD    ++   G +   S    + E E  
Sbjct: 734 AGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVG-LTTSSESSSMDETEIS 792

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +++    HSER AIA+GLI+  P  PI + KNL +C  CH   K ISK   REI +RD  
Sbjct: 793 RDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHDTVKFISKTVRREISVRDSE 852

Query: 640 RFHHFRGGNCSCMD 653
            FHHF+ G CSC D
Sbjct: 853 HFHHFKDGECSCGD 866



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 176/362 (48%), Gaps = 43/362 (11%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F +L  A  +F ++ + NL++WN L+  Y+      ++  ++ ++++     P+ +TFP 
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPC 201

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V++    +     G+ +H  V++  +E D+ + N+LI  Y  CGD+  A  +F  + ++D
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           ++SWN+MISG+ + G   + ++L+  M   +V PD +T+ +V+SAC              
Sbjct: 262 IISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISAC-------------- 307

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                 EL                      LG   +G  IHA +   G  ++  +  SL 
Sbjct: 308 ------EL----------------------LGDRRLGRDIHAYVITTGFAVDISVCNSLT 339

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY   G+  +A ++F  +  +D+  W+TMI+G+       +A+D +  M +  VKP+ +
Sbjct: 340 QMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEI 399

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL AC+  G +D G +  +++     ++  V     +++M  +   +D+A++    
Sbjct: 400 TVAAVLSACATLGDLDTG-VELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHN 458

Query: 445 MP 446
           +P
Sbjct: 459 IP 460



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 47/264 (17%)

Query: 145 VIKAAARLVQFRV----GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           V  A  RL +++     G  ++ + + S     + + N+ +  +   G+L  A+ VF  +
Sbjct: 96  VFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKM 155

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELY-REMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
            ++++ SWN ++ G+ + G+F++AI LY R + +  VKPD  T   VL  C    DL  G
Sbjct: 156 SERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARG 215

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
           R                                          ++H  + + G +L+  +
Sbjct: 216 R------------------------------------------EVHVHVVRYGYELDIDV 233

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +LI MY KCG++  A  +F  +  RD+  W+ MI+G+   G G E L LF  M+   V
Sbjct: 234 VNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSV 293

Query: 380 KPNAVTFTNVLCACSHSGLVDEGR 403
            P+ +T T+V+ AC   G    GR
Sbjct: 294 DPDLMTLTSVISACELLGDRRLGR 317



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 5/185 (2%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EA+ + + +Q    V  DE  FV+++  C    A + G ++++        L+  L  + 
Sbjct: 77  EAMKLLNSMQ-ELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAF 135

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPN 382
           + M+ + GNL  A  VF  +  R++F W+ ++ G+A  G   EA+ L+ RM     VKP+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPD 195

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPV-YGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
             TF  VL  C   G+ D  R     +  V YG    +     ++ M  + G +  A   
Sbjct: 196 VYTFPCVLRTC--GGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 442 IEKMP 446
            ++MP
Sbjct: 254 FDRMP 258


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 343/569 (60%), Gaps = 17/569 (2%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR  F++I       WN +I  Y  S    ++F +F ++V +    P+EFTF  ++ A A
Sbjct: 249 ARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMV-SKRIPPDEFTFTSLLSACA 307

Query: 151 RLVQFRVGQAIHGMVIK--SSF--EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
               F  G+++HG  I+    F  E  L ++N+L+  Y+  G +A+A  +F  +  KDVV
Sbjct: 308 NAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVV 367

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN+++SG+++ G  + A  +++EM  ++    E++ + ++S          G    +AL
Sbjct: 368 SWNTILSGYIESGCLDNAARIFKEMPYKS----ELSWMVMVSGYVH------GGLAEDAL 417

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F++++ S++V P ++T+   ++AC +LGA+  G Q+HA + + G + +     +L+ M
Sbjct: 418 KLFNQMR-SEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTM 476

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y +CG +  A  VF  + + D   W+ MI+    +G GREAL+LF +M    + P+ ++F
Sbjct: 477 YARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISF 536

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +L AC+H+GLVD+G  +F  ME  +G+ PG  HY  ++D+LGRAG + EA + I+ MP
Sbjct: 537 LTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMP 596

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P  ++W A+L  C+I+ ++EL  YA   L ++ PE+ G  +LLSN Y+  G+W + + 
Sbjct: 597 FEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAAR 656

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +RK MR  G+KKEPGCS IEV  ++H FL G++ HP   E+Y  L+ + A+++  GYVP+
Sbjct: 657 VRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPD 716

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
               LQ +   + +E  L  HSERLA+++GL+ +     + ++KNL++CGDCHT    +S
Sbjct: 717 TKFALQDMAPHE-KEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMS 775

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +   REI++RD  RFHHF+ G CSC +YW
Sbjct: 776 RAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 182/438 (41%), Gaps = 58/438 (13%)

Query: 70  PYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
           P +A+ L +  A+     L  +   FD +P  + +    N +I A++ ++    +  +F 
Sbjct: 89  PVAATSLVSAYAVA--GRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFR 146

Query: 128 QLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQA--IHGMVIKSSFEDDLFISNSLIHFY 184
            L+ +     P++++F  ++ A  ++    V     +H  V K      L +SN+LI  Y
Sbjct: 147 SLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALY 206

Query: 185 AIC----------------------------------GDLAMAYCVFVMI-GKKDVVSWN 209
             C                                  GD+  A   F  I G+ DVV WN
Sbjct: 207 MKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVV-WN 265

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +MISG+VQ G   +A EL+R M  + + PDE T  ++LSACA       G+  +      
Sbjct: 266 AMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQF--- 322

Query: 270 HELQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDM 326
             ++L  +  P+    V  ++++  ++ G + +  +I   M  K  +  N  L+      
Sbjct: 323 --IRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSG----- 375

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y + G LD A  +F  +  +    W  M++G+   G   +AL LF++M+   VKP   T+
Sbjct: 376 YIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTY 435

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              + AC   G +  G+     +    G          ++ M  R G + +A      MP
Sbjct: 436 AGAVAACGELGALKHGKQLHAHLVQC-GFEASNSAGNALLTMYARCGAVKDARLVFLVMP 494

Query: 447 IVPGASVWGALLGACKIH 464
            V   S W A++ A   H
Sbjct: 495 NVDSVS-WNAMISALGQH 511


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/659 (35%), Positives = 359/659 (54%), Gaps = 65/659 (9%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH  +L++  F D Y A+ L    A      +E A  +F+ +   +  +WNTL+     +
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYA--KCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
            E     + + + + NS   P++ +   +I A+ R      G+ +H   I++  + ++ I
Sbjct: 328 -ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQI 386

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
            N+L+  YA C  +      F  + +KD++SW ++I+G+ Q  F  +AI L+R+++++ +
Sbjct: 387 GNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGM 446

Query: 237 KPDEVTMVAVLSACAK---------------KRDL-------------------EFGR-- 260
             D + + +VL AC+                KRDL                   ++ R  
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRA 506

Query: 261 -----------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                      W            P EAL +F+ L+   N+ PD    +S LSA A L +
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK-QTNIQPDSIAIISALSATANLSS 565

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +  G +IH  + ++G  L   + +SL+DMY  CG ++ + ++FH+VK RD+ +W++MI  
Sbjct: 566 LKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINA 625

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
             M+GCG +A+ LF +M +  V P+ +TF  +L ACSHSGL+ EG+ FF  M+  Y + P
Sbjct: 626 NGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEP 685

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
             +HY CMVD+L R+  L+EA  F+  MPI P + +W ALLGAC IH N EL E A   L
Sbjct: 686 WPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKEL 745

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
           L+ + EN G   L+SNI+A  G+W++V E+R  M+ +GLKK PGCS IEV+ +IH F+A 
Sbjct: 746 LQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMAR 805

Query: 538 ESSHPLCKEIYSKLDEIVARL-KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYG 596
           + SHP   +IY KL +    L K  GY+     +   V EE+ + Q L  HSERLA+ YG
Sbjct: 806 DKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEE-KTQMLYGHSERLALGYG 864

Query: 597 LISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           L+       IRI KNLR+C DCHT  K+ S++  R +++RD  RFHHF  G CSC D+W
Sbjct: 865 LLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 182/387 (47%), Gaps = 53/387 (13%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           L  HP  T   + + H      +  L    K + Q +Q+H  +L++ L    + A+KL  
Sbjct: 34  LSTHPLATPSRLEHAHS----LLLDLCVAAKALPQGQQLHALLLKSHL--SAFLATKLVL 87

Query: 79  PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN 138
               G   SL  A ++FD++ +  +++WN L+ A+ SS + +++  ++  +        +
Sbjct: 88  --MYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAI-D 144

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF- 197
             TFP V+KA   L + R+G  IHG+ +K  + + +F+ N+LI  Y  CGDL  A  +F 
Sbjct: 145 ACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFD 204

Query: 198 -VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            +M+ K+D VSWNS+IS  V  G                              C      
Sbjct: 205 GIMMEKEDTVSWNSIISAHVAEG-----------------------------NCL----- 230

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                  EALS+F  +Q    V  + +TFV+ L        + +G+ IH  + K     +
Sbjct: 231 -------EALSLFRRMQ-EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFAD 282

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            Y+  +LI MY KCG ++ A  VF ++  RD   W+T+++G        +AL+ F  MQ 
Sbjct: 283 VYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQN 342

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGR 403
           +  KP+ V+  N++ A   SG + +G+
Sbjct: 343 SGQKPDQVSVLNLIAASGRSGNLLKGK 369



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 110/217 (50%), Gaps = 7/217 (3%)

Query: 38  PHPVFSLIKQCKNIKQ---LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           P  + S+++ C  +K    +++IH  + +  L  D    + +      G    ++YAR  
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVN--VYGEVGHIDYARRA 506

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ I   ++ +W ++I     +  P+++  +F  L   +   P+       + A A L  
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL-KQTNIQPDSIAIISALSATANLSS 565

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            + G+ IHG +I+  F  +  I++SL+  YA CG +  +  +F  + ++D++ W SMI+ 
Sbjct: 566 LKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINA 625

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
               G   KAI L+++M  +NV PD +T +A+L AC+
Sbjct: 626 NGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 343/603 (56%), Gaps = 45/603 (7%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           +LK+IH   LR G        +  F         SL YA  +F  +    + +WN LI  
Sbjct: 418 KLKEIHGYALRHGFIQSDELVANAFVA-GYAKCGSLHYAEGVFCGMESKMVSSWNALIGG 476

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           +  +  P ++  ++L L+  S   P+ FT   ++ A ARL     G+ IHG ++++ FE 
Sbjct: 477 HVQNGFPRKALDLYL-LMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFEL 535

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D FI  SL+  Y  CG + +A   F  + +K++V WN+MI+GF Q  F            
Sbjct: 536 DEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEF------------ 583

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                        P +AL +FH++ LS  + PDE + +  L AC
Sbjct: 584 -----------------------------PFDALDMFHQM-LSSKIWPDEISIIGALGAC 613

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           +Q+ A+ +G ++H    K  +  + ++T SLIDMY KCG ++++  +F  V  +    W+
Sbjct: 614 SQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWN 673

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +I G+ ++G GR+A++LF  MQ A  +P++VTF  +L AC+H+GLV EG  +  QM+ +
Sbjct: 674 VLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSL 733

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +G+ P ++HY C+VDMLGRAG L+EA+E + ++P  P + +W +LL +C+ + ++++ E 
Sbjct: 734 FGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEK 793

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
             + LLEL P+     VL+SN YA+ GKWD V ++R+ M+  GL+K+ GCS IE+ G++ 
Sbjct: 794 VANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVS 853

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           +FL G+ S     +I     E+  ++   GY P+ S +L  + EED + + L  HSE+LA
Sbjct: 854 RFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHEL-EEDEKIKILRNHSEKLA 912

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           I++GL++      +R+ KNLR+C DCH   KL+SK+  REI++RD  RFHHF+ G CSC 
Sbjct: 913 ISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCG 972

Query: 653 DYW 655
           DYW
Sbjct: 973 DYW 975



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 46/303 (15%)

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +F+   + NL+ WN L+  Y  ++    +  +F++++  + + P+ FT P VIKA   + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             R+G+A+HG  +K+    D+F+ N+LI  Y   G +  A  VF  + ++++VSWNS++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 214 GFVQGGFFEKAIELYREM--EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
             ++ G FE++  L++ +    E + PD  TMV V+  CA++ ++  G        +FH 
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-------VFHG 323

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           L L              L  C +L                  K+N    +SL+DMY+KCG
Sbjct: 324 LALK-------------LGLCGEL------------------KVN----SSLLDMYSKCG 348

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVL 390
            L +A  +F T   ++V  W++MI G++     R A +L  +MQ E KVK N VT  NVL
Sbjct: 349 YLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL 407

Query: 391 CAC 393
             C
Sbjct: 408 PVC 410



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 173/357 (48%), Gaps = 51/357 (14%)

Query: 44  LIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +IK C  +  ++    +H   L+T +  D +  + L      G F  +E A ++FD++PQ
Sbjct: 202 VIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIA--MYGKFGFVESAVKVFDKMPQ 259

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            NL +WN+++ A   +    +S+ +F  L+  +    P+  T   VI   AR  + R+G 
Sbjct: 260 RNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM 319

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
             HG+ +K     +L +++SL+  Y+ CG L  A  +F    +K+V+SWNSMI G+ +  
Sbjct: 320 VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDR 378

Query: 220 FFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
            F  A EL R+M+ME+ VK +EVT++ VL  C                            
Sbjct: 379 DFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC---------------------------- 410

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCGNLDKAL 337
             +E  F+ +              +IH    + G I+ +  +  + +  Y KCG+L  A 
Sbjct: 411 -EEEIQFLKL-------------KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAE 456

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            VF  ++S+ V  W+ +I G    G  R+ALDL+  M+ + ++P+  T  ++L AC+
Sbjct: 457 GVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACA 513



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 49/341 (14%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREM 94
           + SL+  C  +K L   K+IH  MLR G   D +   S   L+  C       +  A+  
Sbjct: 505 IASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCG-----KILLAKLF 559

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD + + NL  WNT+I  +S +  P  +  +F Q++ +S  +P+E +    + A +++  
Sbjct: 560 FDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQML-SSKIWPDEISIIGALGACSQVSA 618

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R+G+ +H   +KS   +  F++ SLI  YA CG +  +  +F  +  K  V+WN +I+G
Sbjct: 619 LRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITG 678

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK----KRDLE--------FGRWP 262
           +   G   KAIEL++ M+    +PD VT +A+L+AC         LE        FG  P
Sbjct: 679 YGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKP 738

Query: 263 ------------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
                             NEAL + +EL       PD   + S+LS+C     +DIG ++
Sbjct: 739 KLEHYACVVDMLGRAGRLNEALELVNELP----DKPDSRIWSSLLSSCRNYRDLDIGEKV 794

Query: 305 HAKMKKQG-IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
             K+ + G  K   Y+  S  + Y + G  D+  ++   +K
Sbjct: 795 ANKLLELGPDKAENYVLIS--NFYARLGKWDEVRKMRQRMK 833



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 149/382 (39%), Gaps = 74/382 (19%)

Query: 68  FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP-------NLYTWNTLIRAYSSSAEPI 120
           F P  +S LF+P  + +    + A + F  +          N    N      SS+++P 
Sbjct: 35  FTPPKSSHLFSP-IISSHKKQQNASKHFHNLCNTGNLNQAFNFLQSNLNDVVSSSNSKPK 93

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFISNS 179
           Q   + LQL                           +G+ IH  +  S  F++D+ +   
Sbjct: 94  QLIGLLLQL-------------------CGEYKNIEIGRKIHNFISTSPHFQNDVVLITR 134

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKP 238
           L+  Y+IC     +  VF    +K++  WN+++SG+++   F  A+ ++ EM  +    P
Sbjct: 135 LVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVP 194

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
           D  T+  V+ AC    D+  G    EA+   H   L   V  D F   ++++   + G  
Sbjct: 195 DNFTLPCVIKACVGVYDVRLG----EAV---HGFALKTKVLSDVFVGNALIAMYGKFGF- 246

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
                                             ++ A++VF  +  R++  W++++   
Sbjct: 247 ----------------------------------VESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 359 AMYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
              G   E+  LF  +   +  + P+  T   V+  C+  G V  G M F+ +    G+ 
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG-MVFHGLALKLGLC 331

Query: 417 PGVKHYTCMVDMLGRAGLLDEA 438
             +K  + ++DM  + G L EA
Sbjct: 332 GELKVNSSLLDMYSKCGYLCEA 353



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 17/195 (8%)

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNL 333
           S N  P +   + +L  C +   ++IG +IH  +      + +  L T L+ MY+ C + 
Sbjct: 87  SSNSKPKQLIGL-LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSP 145

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCA 392
             +  VF+  + +++F+W+ +++G+      R+A+ +F  M    +  P+  T   V+ A
Sbjct: 146 YDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKA 205

Query: 393 CSHSGLVDEGRMFFNQMEPVYG------VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           C     V  G       E V+G      V+  V     ++ M G+ G ++ AV+  +KMP
Sbjct: 206 CVGVYDVRLG-------EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP 258

Query: 447 IVPGASVWGALLGAC 461
                S W +++ AC
Sbjct: 259 QRNLVS-WNSVMYAC 272


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 352/676 (52%), Gaps = 80/676 (11%)

Query: 49  KNIKQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           K++KQ + +H  +L T L  FD    + L T  A      LE AR+ FD++ +  L TWN
Sbjct: 72  KDLKQGQLLHAMILETQLLEFDIILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWN 129

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSP--YFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            LI  YS + +   +  I+  +V  SP    P+  TF   + A + +     G+ I    
Sbjct: 130 ALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEART 189

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           + S +  D  + N+LI+ Y+ CG L  A  VF  +  +DV++WN+MISG+ + G   +A+
Sbjct: 190 VASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQAL 249

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN---------------------- 263
           EL++ M   + KP+ VT + +L+AC    DLE GR  +                      
Sbjct: 250 ELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMY 309

Query: 264 --------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG----AMDI----------- 300
                   EA  +F  L+       D  T+  ++ A  Q G    A+DI           
Sbjct: 310 TKCSSSLEEARQVFERLR-----TRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 301 --------------------GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
                               G  +HA +     K +  L  SL++MY +CG+LD  + VF
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             ++ + +  WST+IA +A +G  R  L+ F  + +  +  + VT  + L ACSH G++ 
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLK 484

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG   F  M   +G+ P  +H+ CMVD+L RAG L+ A   I  MP +P A  W +LL  
Sbjct: 485 EGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544

Query: 461 CKIHENVELAEYACSHLLELEPEN-HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           CK+H + + A      L ELE E+ H  + LLSN+YA+ G+WD+V   RK       +K 
Sbjct: 545 CKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKN 601

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PGCS IE+N  +H+F+AG+ SHP  + I +++  +  ++K  GYVP+   +L  V+EE+ 
Sbjct: 602 PGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEE- 660

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +EQ L  HSE+LAIAYGLIS  P  P+ IVKNLR C DCH  AK IS++  R+I++RD  
Sbjct: 661 KEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDST 720

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF  G+CSC DYW
Sbjct: 721 RFHHFENGSCSCKDYW 736



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 163/329 (49%), Gaps = 41/329 (12%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G   S+  A  +F  I  PN  +W  ++ A++ +    ++   + ++V      P+   F
Sbjct: 3   GKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMF 61

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              I   +     + GQ +H M++++   E D+ +  +LI  YA C DL +A   F  +G
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           KK +V+WN++I+G+ + G    A+++Y++M                            + 
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDM--------------------------VSKS 155

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P             + + PD  TF S L AC+ +G +  G +I A+    G   +  +  
Sbjct: 156 P-------------EGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY+KCG+L+ A +VF  +K+RDV  W+TMI+G+A  G   +AL+LF RM     KP
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           N VTF  +L AC++   +++GR    +++
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVK 291



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 64/396 (16%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSAS-- 74
           P  P P  +T              L+  C N++ L+Q   IH ++   G   D    +  
Sbjct: 257 PNDPKPNVVTF-----------IGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVL 305

Query: 75  -KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
             ++T C+    SSLE AR++F+++   ++ TWN LI AY    +   +  IF Q+   +
Sbjct: 306 LNMYTKCS----SSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              PNE T   V+ A A L   R G+A+H ++     + D+ + NSL++ Y  CG L   
Sbjct: 362 -VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  I  K +VSW+++I+ + Q G     +E + E+  E +  D+VTMV+ LSAC+  
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACS-- 478

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                G    E +  F  +     + PD   F+                           
Sbjct: 479 ----HGGMLKEGVQSFLSMVGDHGLAPDYRHFL--------------------------- 507

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFS 372
                    ++D+ ++ G L+ A  + H +    D   W+++++G  ++   + A  +  
Sbjct: 508 --------CMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVAD 559

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           ++ E + +    T T +    + +G  D+ R   N+
Sbjct: 560 KLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNR 595



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 45/266 (16%)

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            Y  CG +A A  VF  I   + VSW  +++ F + G + +A+  YR M +E ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
            V  +  C+  +DL+ G+       + H + L                            
Sbjct: 61  FVVAIGVCSSSKDLKQGQ-------LLHAMIL---------------------------- 85

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
                 + Q ++ +  L T+LI MY +C +L+ A + F  +  + +  W+ +IAG++  G
Sbjct: 86  ------ETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNG 139

Query: 363 CGREALDLFSRMQEAK---VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
             R AL ++  M       +KP+A+TF++ L ACS  G + +GR          G     
Sbjct: 140 DHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE-IEARTVASGYASDS 198

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKM 445
                +++M  + G L+ A +  +++
Sbjct: 199 IVQNALINMYSKCGSLESARKVFDRL 224



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG++  AL VFH ++  +   W+ ++A FA  G  REAL  + RM    ++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F   +  CS S  + +G++    +     +   +   T ++ M  R   L+ A +  ++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 446 ---------PIVPGASVWGALLGACKIHENV 467
                     ++ G S  G   GA KI++++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDM 151


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 342/594 (57%), Gaps = 41/594 (6%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           LE AR +F+++      TWNT++  Y+  A  ++        +++    P+  ++  ++ 
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKE----AHELFDKIPEPDSVSYNIMLV 144

Query: 148 AAARLVQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
              R    +   A  + M +K     D+   N+LI  +A  G +  A+ +F ++ +K+ V
Sbjct: 145 CYLRSYGVKAALAFFNKMPVK-----DIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGV 199

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------ 260
           SW++MISG+V+ G  E A ELY+ + M++V    V   A+L+   K   +E         
Sbjct: 200 SWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQRM 255

Query: 261 -------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
                  W              + L +F  + +   V P+  +  SVL  C+ L A+ +G
Sbjct: 256 AVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCSNLSALPLG 314

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
            Q+H  + K  +  +    TSLI MY KCG+LD A ++F  +  +DV  W+ MI+G+A +
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQH 374

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G GR+AL LF +M+   +KP+ +TF  V+ AC+H+G VD G  +F  M+  +G+     H
Sbjct: 375 GAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVH 434

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           YTC++D+LGRAG LDEAV  I++MP  P A+++G LLGAC+IH+N++LAE+A  +LL L+
Sbjct: 435 YTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLD 494

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P +    V L+NIYA T KWD V+++RK M+   + K PG S IE+    H+F + +  H
Sbjct: 495 PTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLH 554

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P    I+ KL+E+  ++K  GYVP+    L  VEEE  +E+ L  HSE+LAIA+GL+   
Sbjct: 555 PELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEH-KEKLLLWHSEKLAIAFGLMKTA 613

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           P  PIR+ KNLRVCGDCH   K IS +  REI++RD  RFHHFR G CSC DYW
Sbjct: 614 PGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 150/313 (47%), Gaps = 30/313 (9%)

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ-GGFFEKAIELYRE 230
           D + ++ ++  F   C DL  A  VF  +  +  V+WN+M+SG+ +  G  ++A EL+ +
Sbjct: 72  DVVSLNKTIASFVRAC-DLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLE-FGRWPNEALSIFHEL--------QLSK----- 276
           +   +     + +V  L +   K  L  F + P + ++ ++ L        Q+ K     
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 277 NVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           +V P++   ++ +++S   + G ++   +++   K  G+K +  + T+++  Y K G ++
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELY---KNVGMK-SVVVETAMLTGYMKFGKVE 246

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  +F  +  +++  W++MIAG+       + L +F  M E++V+PN ++ ++VL  CS
Sbjct: 247 LAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTC---MVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           +   +  GR    QM  +    P  K  T    ++ M  + G LD A +   +MP     
Sbjct: 307 NLSALPLGR----QMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 452 SVWGALLGACKIH 464
             W A++     H
Sbjct: 362 ITWNAMISGYAQH 374


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 322/568 (56%), Gaps = 43/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L YAR++FD +   N  +W+ +I  Y +S    ++  +F Q++      P   T   V++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A+L     G+ +H  +IK     D+ + N+L+  YA C                    
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC-------------------- 360

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
                      G  + AI  + EM       D V+  A++S C +  +         ALS
Sbjct: 361 -----------GVIDDAIRFFDEMN----PKDSVSFSAIVSGCVQNGNAAV------ALS 399

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           IF  +QLS  ++PD  T + VL AC+ L A+  G   H  +  +G   +  +  +LIDMY
Sbjct: 400 IFRMMQLS-GIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMY 458

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG +  A EVF+ +   D+  W+ MI G+ ++G G EAL LF  +    +KP+ +TF 
Sbjct: 459 SKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFI 518

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L +CSHSGLV EGR++F+ M   + +VP ++H  CMVD+LGRAGL+DEA  FI  MP 
Sbjct: 519 CLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPF 578

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W ALL AC+IH+N+EL E     +  L PE+ G  VLLSNIY+  G+WD+ + +
Sbjct: 579 EPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 638

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R   +  GLKK PGCS IE+NG +H F+ G+ SH    +I  KL+E++  +K  GY    
Sbjct: 639 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAEC 698

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S + Q VEEE+ +EQ L  HSE+LAIA+G+++++  +PI + KNLRVCGDCHT  K ++ 
Sbjct: 699 SFVFQDVEEEE-KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTL 757

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI +RD  RFHHF+ G C+C D+W
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 228/529 (43%), Gaps = 98/529 (18%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP---YSASKLFTPCA 81
           P    V N + H    +     Q K++ + K+IH   L+     D    +  ++L+  C 
Sbjct: 2   PLRFEVKNNYLH----LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC- 56

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
               + +  AR +FD+IP P++  WN +IRAY+ +  P    +     + +    PN++T
Sbjct: 57  ----NQVVLARRLFDEIPNPSVILWNQIIRAYAWNG-PFDGAIDLYHSMLHLGVRPNKYT 111

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +PFV+KA + L+    G  IH        E D+F+  +L+ FYA CG L  A  +F  + 
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +DVV+WN+MI+G    G  + A++L  +M+ E + P+  T+V VL    + + L  G+ 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK- 230

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                                     +H    ++       + T
Sbjct: 231 -----------------------------------------ALHGYCVRRSFDNGVVVGT 249

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVK 380
            L+DMY KC  L  A ++F  +  R+   WS MI G+    C +EAL+LF +M  +  + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 381 PNAVTFTNVLCACSHSGLVDEGR---MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
           P  VT  +VL AC+    +  GR    +  ++  V  ++ G      ++ M  + G++D+
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG----NTLLSMYAKCGVIDD 365

Query: 438 AVEFIEKM---------PIVPGASVWGALLGACKIHENVELAEY------------ACSH 476
           A+ F ++M          IV G    G    A  I   ++L+              ACSH
Sbjct: 366 AIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 477 LLELEPE--NHGALVL------------LSNIYAKTGKWDNVSELRKHM 511
           L  L+    +HG L++            L ++Y+K GK     E+   M
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/566 (37%), Positives = 324/566 (57%), Gaps = 47/566 (8%)

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++FD+ P  +  +WNT+I     S     +     ++      F N +T+      A  L
Sbjct: 199 QLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVF-NHYTYSTAFVLAGML 257

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM---IGKKDVVSWN 209
           +   +G+ +HG V+ ++ E D F+ +SL+  Y  CG L  A  VF     + +    +W+
Sbjct: 258 LLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWS 317

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +M++G+VQ G  E+A++L+R M                                      
Sbjct: 318 TMVAGYVQNGREEEALDLFRRM-------------------------------------- 339

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
               L + V  D FT  SV +ACA +G ++ G Q+H  ++K   KL+  L ++++DMY K
Sbjct: 340 ----LREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAK 395

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CGNL+ A  +F    ++++ VW++M+  +A +G GR A++LF RM   K+ PN +T   V
Sbjct: 396 CGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGV 455

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSH GLV EG ++F QM+  YG+VP ++HY C+VD+ GR+GLLD+A  FIE+  I  
Sbjct: 456 LSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINH 515

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
            A VW  LL AC++H++ E A+ A   L++LE  + G+ V+LSNIYA   KW +  ELR 
Sbjct: 516 EAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRV 575

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            M+   ++K+PG S I +   +H F+AG++SHP   EIY+ L+++V RLK  GY      
Sbjct: 576 SMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDL 635

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           ++  VE+E  +E AL  HSE+LAIA+G+IS     P+RI KNLRVC DCH   K IS   
Sbjct: 636 VVHDVEDEQ-RETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLAT 694

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            REI++RD YRFHHF+  +CSC D+W
Sbjct: 695 GREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 177/383 (46%), Gaps = 16/383 (4%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +FD+ P      W   I   +           F +++      PN F    V++  A
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +     G+ +HG ++++    D+ + N+++  YA CG    A  VF  + ++D VSWN 
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
            I   +Q G    +++L+ E  + +       +  ++ +      L   R   +A  +F 
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVF- 242

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                     + +T+ +       L   D+G Q+H ++    ++ + ++ +SL+DMY KC
Sbjct: 243 ----------NHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKC 292

Query: 331 GNLDKALEVFH--TVKSRDV-FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           G L+ A  VF   +  +RD+ F WSTM+AG+   G   EALDLF RM    V  +  T T
Sbjct: 293 GLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLT 352

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           +V  AC++ G+V++GR     +E ++  +      + +VDM  + G L++A    ++   
Sbjct: 353 SVAAACANVGMVEQGRQVHGCVEKLWYKLDA-PLASAIVDMYAKCGNLEDARSIFDR-AC 410

Query: 448 VPGASVWGALLGACKIHENVELA 470
               +VW ++L +   H    +A
Sbjct: 411 TKNIAVWTSMLCSYASHGQGRIA 433



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 12/203 (5%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ---IPQPNLYTWNT 108
           +Q+H ++L   L  D +  S L   +  C L     LE A  +FD    + +   + W+T
Sbjct: 264 RQLHGRVLIAALEGDAFVRSSLMDMYCKCGL-----LEAAASVFDHWSPLTRDMNFAWST 318

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           ++  Y  +    ++  +F +++       + FT   V  A A +     G+ +HG V K 
Sbjct: 319 MVAGYVQNGREEEALDLFRRML-REGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKL 377

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            ++ D  ++++++  YA CG+L  A  +F     K++  W SM+  +   G    AIEL+
Sbjct: 378 WYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 229 REMEMENVKPDEVTMVAVLSACA 251
             M  E + P+E+T+V VLSAC+
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACS 460



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 3/142 (2%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKV 379
            S++  + +      A  VF    +R   VW+  I+G A  G   + +  F+ M  E + 
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            PNA     V+  C+  G V+ G+     M    GV   V     ++DM  + G  + A 
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLR-NGVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 440 EFIEKMPIVPGASVWGALLGAC 461
                M      S W   +GAC
Sbjct: 168 RVFGAMAERDAVS-WNIAIGAC 188


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/635 (38%), Positives = 354/635 (55%), Gaps = 82/635 (12%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPY----------------SASKLF------- 77
           L+K C   K  K+ +QIH  +L+ G   D Y                 A K+F       
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRD 140

Query: 78  ----TPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
               T    G  S   +E A++MFD+IP  ++ +WN +I  Y+ +    ++  +F +++ 
Sbjct: 141 VVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM- 199

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
            +   P+E T   V+ A A+     +G+ +H  +    F  +L I N+LI  Y+ CG++ 
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVE 259

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  +   +  KDV+SWN++I G+         + LY+E                     
Sbjct: 260 TACELLEGLSNKDVISWNTLIGGYTH-------MNLYKE--------------------- 291

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA----K 307
                        AL +F E+ L     P++ T +S+L ACA LGA+DIG  IH     K
Sbjct: 292 -------------ALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKK 337

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGRE 366
           +K   +     L TSLIDMY KCG++D A +V  +   +R +  W+ MI GFAM+G    
Sbjct: 338 LKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANA 397

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
           A D+FSRM++  ++P+ +TF  +L ACSHSG++D GR  F  M   Y + P ++HY CM+
Sbjct: 398 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMI 457

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
           D+LG +GL  EA E I  MP+ P   +W +LL ACKIH N+EL E     L+++EPEN G
Sbjct: 458 DLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPG 517

Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE-PGCSSIEVNGEIHKFLAGESSHPLCK 545
           + VLLSNIYA  GKW+ V ++R  +   G+KK+ PGCSSIE++  +H+F+ G+  HP  +
Sbjct: 518 SYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNR 577

Query: 546 EIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP 605
           EIY  L+E+   L+  G+VP+ S +LQ +EEE  +E AL  HSE+LAIA+GLIS +P   
Sbjct: 578 EIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTK 636

Query: 606 IRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
           + IVKNLRVC +CH   KLISK+Y REI+ RDR R
Sbjct: 637 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 218/459 (47%), Gaps = 80/459 (17%)

Query: 71  YSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
           Y+ S+L   C L   F  L YA  +F+ IP+PN   WN + R ++ S++P+ +  +++ +
Sbjct: 7   YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66

Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
           + +    PN FTFPF++K+ A+   F+ GQ IHG V+K  F+ DL++  SLI  YA  G 
Sbjct: 67  I-SLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGR 125

Query: 190 LAMAYCVFVM-------------------------------IGKKDVVSWNSMISGFVQG 218
           L  A  VF                                 I  KDVVSWN+MISG+ + 
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G ++KA+EL++EM   NVKPDE TM  V+SACA+   +E GR                  
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGR------------------ 227

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                                   Q+H+ +   G   N  +  +LID+Y+KCG ++ A E
Sbjct: 228 ------------------------QVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +   + ++DV  W+T+I G+      +EAL LF  M  +   PN VT  ++L AC+H G 
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323

Query: 399 VDEGR---MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +D GR   ++ ++      V       T ++DM  + G +D A +  +        S W 
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 456 ALLGACKIHENVELAEYACSHLLE--LEPENHGALVLLS 492
           A++    +H     A    S + +  +EP++   + LLS
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 422


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 359/631 (56%), Gaps = 54/631 (8%)

Query: 32   NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
            NG       V S +  C ++  L   +QIH +  + GL  D   ++ L T  A     S+
Sbjct: 551  NGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYA--ETDSI 608

Query: 89   EYAREMFDQIPQPNLYTWNTLIRAYSS-SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
               +++F Q+P+ +  +WN+ I A +   A  +Q+   FL+++  + + PN  TF  ++ 
Sbjct: 609  NECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMM-QAGWRPNRVTFINILA 667

Query: 148  AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVV 206
            A +      +G  IH +++K S  DD  I N+L+ FY  C  +     +F  M  ++D V
Sbjct: 668  AVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEV 727

Query: 207  SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            SWNSMISG++  G   KA++L                                 WP    
Sbjct: 728  SWNSMISGYLHSGILHKAMDLV--------------------------------WP---- 751

Query: 267  SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                   + +    D FTF +VLSACA +  ++ G+++HA   +  ++ +  + ++L+DM
Sbjct: 752  ------MMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDM 805

Query: 327  YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
            Y KCG +D A   F  +  R+++ W++MI+G+A +G G++AL +F+RM++    P+ VTF
Sbjct: 806  YAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTF 865

Query: 387  TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              VL ACSH GLVDEG   F  M  VYG+ P ++H++CMVD+LGRAG + +  +FI+ MP
Sbjct: 866  VGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMP 925

Query: 447  IVPGASVWGALLGAC--KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
            + P   +W  +LGAC      N EL + A   L+ELEP+N    VLLSN++A  G W++V
Sbjct: 926  MDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDV 985

Query: 505  SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
             E R  MR + +KK+ GCS + +   +H F+AG+ +HP  ++IY KL E++ +++  GYV
Sbjct: 986  VEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYV 1045

Query: 565  PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
            P   + L    E + +E+ L+ HSE+LAIA+ +++ +   PIRI+KNLRVCGDCHT  K 
Sbjct: 1046 PETKYAL-YDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKY 1103

Query: 625  ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            ISK+  R+I+LRD  RFHHF GG CSC DYW
Sbjct: 1104 ISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 205/466 (43%), Gaps = 60/466 (12%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           F   K   ++     +H Q+ +TG   D +  + L          +L  AR++FD++PQ 
Sbjct: 147 FDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYV--RIGNLVSARKLFDEMPQK 204

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL--VQFRVGQ 159
           NL +W+ LI  Y+ +  P ++  +F + V +S   PN F     ++A  +      ++G 
Sbjct: 205 NLVSWSCLISGYTQNRMPDEACSLF-KGVISSGLLPNHFAVGSALRACQQCGSTGIKLGM 263

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            IH  + K     D+ +SN L+  Y+ C G +  A+ VF  I  ++ V+WNS+IS + + 
Sbjct: 264 QIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRR 323

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G    A +L+  M+ME V                                  EL L  N 
Sbjct: 324 GDAVSAFKLFSVMQMEGV----------------------------------ELNLRPN- 348

Query: 279 NPDEFTFVSVLSACAQLGAMDIGV----QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
              E+T  S+++A   L   D G+    Q+  +++K G   + Y+ ++L++ + + G +D
Sbjct: 349 ---EYTLCSLVTAACSLA--DCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMD 403

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  +F  +  R+    + ++ G A    G EA  +F  M++  V+ N+ +   +L   +
Sbjct: 404 CAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFT 462

Query: 395 HSGLVDEGRMFFNQMEPVY---GVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
               + EG+    ++       G+V   +     +V+M G+   +D A    + MP    
Sbjct: 463 EFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDT 522

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLE---LEPENHGALVLLSN 493
            S W +++     +E  E A  +C H ++   + P N   +  LS+
Sbjct: 523 VS-WNSMISGLDHNERFEEA-VSCFHTMKRNGMVPSNFSVISTLSS 566



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 204/507 (40%), Gaps = 93/507 (18%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L+Q+ T++ ++G   D Y  S L        +  ++ A+ +F Q+   N  T N L+   
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVN--GFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGL 427

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF----RVGQAIHGMVIKSS 169
           +   +  ++  +F ++        N  +   ++             R GQ +H  + +S 
Sbjct: 428 ARQHQGEEAAKVFKEM--KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSG 485

Query: 170 FED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             D  + I N+L++ Y  C  +  A  VF ++  KD VSWNSMISG      FE      
Sbjct: 486 LVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFE------ 539

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
                                              EA+S FH ++ +  V P  F+ +S 
Sbjct: 540 -----------------------------------EAVSCFHTMKRNGMV-PSNFSVIST 563

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           LS+C+ LG + +G QIH +  K G+ L+  ++ +L+ +Y +  ++++  +VF  +   D 
Sbjct: 564 LSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ 623

Query: 349 FVWSTMIAGFAMYGCG-REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF- 406
             W++ I   A Y     +AL  F  M +A  +PN VTF N+L A S   ++  G     
Sbjct: 624 VSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHA 683

Query: 407 --------------NQMEPVYGVVPGVKH----------------YTCMVDMLGRAGLLD 436
                         N +   YG    ++                 +  M+     +G+L 
Sbjct: 684 LILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILH 743

Query: 437 EAVEFI-------EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           +A++ +       +K+     A+V  A      +   +E+   A    LE +     ALV
Sbjct: 744 KAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALV 803

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGL 516
              ++YAK GK D  S   + M V  +
Sbjct: 804 ---DMYAKCGKIDYASRFFELMPVRNI 827



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 182/401 (45%), Gaps = 68/401 (16%)

Query: 119 PIQSFMIFLQLV--YNSPY-FPNEFTFPF--VIKAAARLVQFRVGQAI------HGMVIK 167
           P  +  +F++L+  YNS Y F   +TF    + +  +   +++   ++      H  + K
Sbjct: 109 PEMASHLFMRLLNKYNSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYK 168

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F DD+F  N+LI+ Y   G+L  A  +F  + +K++VSW+ +ISG+ Q          
Sbjct: 169 TGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQ---------- 218

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
                  N  PDE                        A S+F  + +S  + P+ F   S
Sbjct: 219 -------NRMPDE------------------------ACSLFKGV-ISSGLLPNHFAVGS 246

Query: 288 VLSACAQLGAMDI--GVQIHAKMKKQGIKLNCYLTTSLIDMYTKC-GNLDKALEVFHTVK 344
            L AC Q G+  I  G+QIHA + K     +  L+  L+ MY+ C G++D A  VF  +K
Sbjct: 247 ALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIK 306

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQ----EAKVKPNAVTFTN-VLCACSHSGLV 399
            R+   W+++I+ +   G    A  LFS MQ    E  ++PN  T  + V  ACS   L 
Sbjct: 307 FRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACS---LA 363

Query: 400 DEGRMFFNQMEPVY---GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           D G +   QM       G +  +   + +V+   R GL+D A    ++M      ++ G 
Sbjct: 364 DCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGL 423

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           ++G  + H+  E A+     + +L   N  +LV+L + + +
Sbjct: 424 MVGLARQHQGEEAAK-VFKEMKDLVEINSESLVVLLSTFTE 463



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 180/412 (43%), Gaps = 59/412 (14%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           +++ C+     S++ A  +FD+I   N  TWN++I  Y    + + +F +F  +      
Sbjct: 287 MYSDCS----GSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVE 342

Query: 136 F---PNEFTFPFVIKAAARLVQ--FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
               PNE+T   ++ AA  L      + + +   + KS F  DL++ ++L++ +A  G +
Sbjct: 343 LNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLM 402

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             A  +F  +  ++ V+ N ++ G  +    E+A ++++EM+ + V+ +  ++V +LS  
Sbjct: 403 DCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTF 461

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
            +  +L+ G+                                        G ++HA + +
Sbjct: 462 TEFSNLKEGKRK--------------------------------------GQEVHAYLFR 483

Query: 311 QG-IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            G +     +  +L++MY KC  +D A  VF  + S+D   W++MI+G        EA+ 
Sbjct: 484 SGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVS 543

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
            F  M+   + P+  +  + L +CS  G +  GR    +    +G+   V     ++ + 
Sbjct: 544 CFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLY 602

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
                ++E  +   +MP     S W + +GA        LA+Y  S L  L+
Sbjct: 603 AETDSINECQKVFFQMPEYDQVS-WNSFIGA--------LAKYEASVLQALK 645


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/641 (35%), Positives = 346/641 (53%), Gaps = 73/641 (11%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSS--------------- 87
           L + C+ ++ L+Q+H     +G   D ++A+ L    A LG  ++               
Sbjct: 50  LFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 88  -------------LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
                        L  AR++FD++P+ N+ TWN ++   ++     +S   FL +     
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGM 169

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
           + P+EF    V +  A L     G+ +H  V++S  + D+ + +SL H Y  CG L    
Sbjct: 170 H-PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGE 228

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
            V  M+    +VS N++I+G  Q G  E A+E +  M                       
Sbjct: 229 AVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMR---------------------- 266

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                               S  V  D  TFVS +S+C+ L A+  G QIH ++ K G+ 
Sbjct: 267 --------------------SVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 306

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               + T L+ MY++CG L  +  VF      D F+ S MI+ +  +G G++A++LF +M
Sbjct: 307 KVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 366

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
                +P+ VTF  +L ACSHSGL +EG   F  M   YG+ P VKHYTC+VD+LGR+G 
Sbjct: 367 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGC 426

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           LDEA   I  MP+ P   +W  LL ACK  +N ++AE     ++EL+P +  + VLLSNI
Sbjct: 427 LDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNI 486

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
            A + +W +VSE+RK MR + ++KEPG S +E+ G IH+F  G+ SHP  KEI   L+E+
Sbjct: 487 RATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEM 546

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           +A+++  GY P+ S +L  +E+E+ +E +L+ HSE+LAIA+  +S+    PIR++KNLRV
Sbjct: 547 MAKIRQCGYSPDMSMVLHDMEDEE-KEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRV 605

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH   KL+S++  REI++RD  RFHHF+ G CSC DYW
Sbjct: 606 CDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F  +  AC  L  +    Q+HA     G   + +    L+  Y   G+L  A E+F  + 
Sbjct: 47  FSHLFRACRALRPLR---QLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 103

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            R+V  W+ +  G+   G    A  LF  M E     N  T+  ++   ++ G  +E   
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPE----RNVATWNAMVAGLTNLGFDEESLG 159

Query: 405 FFNQME 410
           FF  M 
Sbjct: 160 FFLDMR 165


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 336/606 (55%), Gaps = 59/606 (9%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQP-NLYT-WNTLIRA 112
           Q+H  +++TG   +P+  + L +  C   T +S   AR++FD+     NL   +N LI  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIAS---ARKVFDENHHSRNLAVCYNALIAG 133

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           YS ++    + ++F Q+        N  T   +I   A  +    G ++H   ++   + 
Sbjct: 134 YSLNSRFSDAVLLFRQMRKEGVSV-NAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDG 192

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           DL + N L+  Y  CG +  A  +F  + +K +++WN+MISG+ Q G     ++LYR+ME
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKME 252

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
              + P                                          D  T V VLS+C
Sbjct: 253 FTGIVP------------------------------------------DPVTLVGVLSSC 270

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A LGA   G ++  +++  G   N +L  +LI+MY +CGNL KA  +F  +  ++V  W+
Sbjct: 271 AHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWT 330

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            +IAG+ M+G G  A+ LF  M  +   P+   F +VL ACSH+GL ++G  +F  ME  
Sbjct: 331 AIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERD 390

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           YG+ PG +HY+C+VD+LGRAG L+EA + I  M + P  +VWGALLGACKIH NVELAE 
Sbjct: 391 YGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAEL 450

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   ++E EP N G  VLLSNI+++ G  + +  +R  MR   LKKEPGCS +E  G IH
Sbjct: 451 AFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIH 510

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ---ALNLHSE 589
            FLAG+ +HP  +EIY  LD +   +K  G   +        ++E   E+    + +HSE
Sbjct: 511 LFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDN-------DQESRNEELITGMGVHSE 563

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           +LAIA+GLI+ EP   I ++KNLRVCGDCH   KL+S++ +R++++RD  RFHHF+ G C
Sbjct: 564 KLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVC 623

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 624 SCKDYW 629



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 51/384 (13%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           YA +  D   Q    +WN  +R  +      ++  ++ Q++ +    PN FTFPF  K+ 
Sbjct: 10  YANKWLDL--QNTTASWNARLRELARQRHFQEALNLYCQMLASGDS-PNAFTFPFAFKSC 66

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVS 207
           A L     G  +HG VIK+  E + F+  SLI  Y  C  +A A  VF      +   V 
Sbjct: 67  ASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVC 126

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           +N++I+G+     F  A+ L+R+M  E V  + VTM+ ++  CA    L FG        
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFG-------- 178

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                              + L AC+    +D  + +           NC LT     MY
Sbjct: 179 -------------------TSLHACSVRFGLDGDLSVG----------NCLLT-----MY 204

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            +CG++D A ++F  +  + +  W+ MI+G+A  G     LDL+ +M+   + P+ VT  
Sbjct: 205 VRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLV 264

Query: 388 NVLCACSHSGLVDEGRMFFNQME-PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            VL +C+H G    GR    ++E   +G  P +K+   +++M  R G L +A    + M 
Sbjct: 265 GVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGM- 321

Query: 447 IVPGASVWGALLGACKIHENVELA 470
                  W A++    +H   ELA
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELA 345


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/619 (35%), Positives = 342/619 (55%), Gaps = 37/619 (5%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + S++  C +++ L   K++H   L+ G   +                  L   R +FD 
Sbjct: 301 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCR-VFDG 359

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +    +  WN +I  Y+ +    ++ ++F+++  ++    N  T   V+ A  R   F  
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            +AIHG V+K   + D F+ N+L+  Y+  G + +A  +F  +  +D+V+WN++I+G+V 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
               E A+ +  +M++   K  E      L                              
Sbjct: 480 SERHEDALLMLHKMQILERKASERASRVSL------------------------------ 509

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P+  T +++L +CA L A+  G +IHA   K  +  +  + ++L+DMY KCG L  + 
Sbjct: 510 -KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 568

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF  +  R+V  W+ ++  + M+G  ++A+D+   M    VKPN VTF +V  ACSHSG
Sbjct: 569 KVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSG 628

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI-VPGASVWGA 456
           +V+EG   F  M+  YGV P   HY C+VD+LGRAG + EA + I  +P     A  W +
Sbjct: 629 MVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSS 688

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGAC+IH N+E+ E A  +L++LEP      VLL+NIY+  G W   +E+R++M+  G+
Sbjct: 689 LLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGV 748

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +KEPGCS IE   E+HKF+AG+SSHP  +++   L+ +  R++  GY+P+ S +L  V E
Sbjct: 749 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNV-E 807

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ED +E  L  HSE+LAIA+G+++  P   IR+ KNLRVC DCH   K ISK+ +REI+LR
Sbjct: 808 EDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILR 867

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHF+ G CSC DYW
Sbjct: 868 DVRRFHHFKNGTCSCGDYW 886



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 183/421 (43%), Gaps = 74/421 (17%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASK----LFTPCALGTFSSLEYAREMF 95
           +L+K   +++ +   KQIH  + + G   D  + +     L+  C  G F ++    ++F
Sbjct: 98  ALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC--GDFGAV---YKVF 152

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ- 154
           D+I + N  +WN+LI +  S  +   +   F + + +    P+ FT   V  A +     
Sbjct: 153 DRISERNQVSWNSLISSLCSFEKWEMALEAF-RCMLDEDVEPSSFTLVSVALACSNFPMP 211

Query: 155 --FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ +H   ++   E + FI N+L+  Y   G LA +  +      +D+V+WN+++
Sbjct: 212 EGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVL 270

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           S   Q   F +A+E  REM +E                                      
Sbjct: 271 SSLCQNEQFLEALEYLREMVLEG------------------------------------- 293

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCG 331
                V PD FT  SVL AC+ L  +  G ++HA   K G +  N ++ ++L+DMY  C 
Sbjct: 294 -----VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 348

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVL 390
            +     VF  +  R + +W+ MI G+A      EAL LF  M+E A +  N+ T   V+
Sbjct: 349 QVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVV 408

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVV--PGVKH----YTCMVDMLGRAGLLDEAVEFIEK 444
            AC  SG        F++ E ++G V   G+         ++DM  R G +D A     K
Sbjct: 409 PACVRSGA-------FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGK 461

Query: 445 M 445
           M
Sbjct: 462 M 462



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 42/299 (14%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W  L+R+   S    ++ + ++ ++      P+ F FP ++KA A L    +G+ IH  V
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIK-PDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 166 IKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
            K  +  D + ++N+L++ Y  CGD    Y VF  I +++ VSWNS+IS       +E A
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           +E +R M  E+V+P   T+V+V  AC+         +P                 P+   
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSN--------FP----------------MPE--- 212

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
                        + +G Q+HA   ++G +LN ++  +L+ MY K G L  +  +  + +
Sbjct: 213 ------------GLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFE 259

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            RD+  W+T+++         EAL+    M    V+P+  T ++VL ACSH  ++  G+
Sbjct: 260 GRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGK 318



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 13/214 (6%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKA 336
           + PD F F ++L A A L  MD+G QIHA + K G  ++   +  +L+++Y KCG+    
Sbjct: 89  IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 148

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF  +  R+   W+++I+    +     AL+ F  M +  V+P++ T  +V  ACS+ 
Sbjct: 149 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNF 208

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKH---YTCMVDMLGRAGLLDEAVEFI---EKMPIVPG 450
            +  EG +   Q+   YG+  G  +      +V M G+ G L  +   +   E   +V  
Sbjct: 209 PM-PEGLLMGKQVH-AYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTW 266

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLE-LEPE 483
            +V  +L   C+  + +E  EY    +LE +EP+
Sbjct: 267 NTVLSSL---CQNEQFLEALEYLREMVLEGVEPD 297


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 336/602 (55%), Gaps = 54/602 (8%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L+Q   Q+L      D Y+  K            L YA  +F  +P  N  TW+ LI  +
Sbjct: 233 LEQNEEQVLIGTALLDMYAKCK-----------QLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                  ++F +F  ++     F +  +    ++  A L    +G  +H ++ KS    D
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           L  SNSL+  YA  G +  A   F  I  KD +S+ +++SG VQ G  E           
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE----------- 390

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EA  +F ++Q + N+ PD  T VS++ AC+
Sbjct: 391 ------------------------------EAFLVFKKMQ-ACNMEPDIATMVSLIPACS 419

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L A+  G   H  +  +G+ L   +  SLIDMY KCG +D + +VF  + +RDV  W+T
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+ ++G G+EA  LF  M+     P+ VTF  ++ ACSHSGLV EG+ +F+ M   Y
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G++P ++HY CMVD+L R GLLDEA +FI+ MP+     VWGALLGAC+IH+N++L +  
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              + +L PE  G  VLLSNI++  G++D  +E+R   +V G KK PG S IE+NG +H 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+ G+ SHP  ++IY +LD I+  +K  GY  + S +LQ +EEE  +E+AL  HSE+LAI
Sbjct: 660 FVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEE-EKEKALLYHSEKLAI 718

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+G++S+   + I + KNLRVCGDCHT  K ++ + NR I++RD  RFHHF+ G CSC +
Sbjct: 719 AFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGN 778

Query: 654 YW 655
           +W
Sbjct: 779 FW 780



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 154/591 (26%), Positives = 241/591 (40%), Gaps = 124/591 (20%)

Query: 17  ISLPR-HPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           + LPR H  P   +     + H  P  S+  + K+ KQ +Q   Q +  G          
Sbjct: 1   MGLPRGHLRP--FSAATAARLHRPPSGSISYEVKDKKQWQQELEQHISRG---------- 48

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
                       L  AR++FD+IP P+   +N LIRAYS    P  + +   + +     
Sbjct: 49  -----------QLALARQVFDRIPAPDARAYNALIRAYSWLG-PFHAAIDLYRSMLRFRV 96

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            PN++TFPFV+KA + LV  R G+ IH     +    DLF+S +LI  Y  C     A  
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  +  +DVV+WN+M++G+   G +  AI    +M+                       
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG-------------------- 196

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
              G  PN +                  T VS+L   AQ GA+  G  IHA   +  ++ 
Sbjct: 197 ---GLRPNAS------------------TLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 316 N---CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           N     + T+L+DMY KC  L  A  VFH +  R+   WS +I GF +     EA +LF 
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 373 RMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            M  E     +A +  + L  C+    +  G    + +    G+   +     ++ M  +
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAK 354

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY------------------- 472
           AGL++EA  F +++ +    S +GALL  C  +   E A                     
Sbjct: 355 AGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVS 413

Query: 473 ---ACSHLLELEPE--NHGALVL------------LSNIYAKTGKWDNVSELRKHMRVSG 515
              ACSHL  L+    +HG++++            L ++YAK GK D   ++        
Sbjct: 414 LIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQV-------- 465

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
             K P    +  N      +AG   H L KE  +    +   +K+ G+ P+
Sbjct: 466 FDKMPARDVVSWN----TMIAGYGIHGLGKEATT----LFLGMKNQGFAPD 508


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/603 (37%), Positives = 342/603 (56%), Gaps = 16/603 (2%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K++H Q+++ GL       + L    A G    ++ A ++FD +P+ +   W +L+ A +
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLN--AYGKCGLIQDALQLFDALPRRDPVAWASLLTACN 80

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL--VQFRVGQAIHGMVIKSSFED 172
            S  P ++  I   L+ ++ + P+ F F  ++KA A L  +  + G+ +H     S F D
Sbjct: 81  LSNRPHRALSISRSLL-STGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSD 139

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D  + +SLI  YA  G       VF  I   + +SW +MISG+ + G   +A  L+R+  
Sbjct: 140 DDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
             N+        A++S   +  +        +A  +F E++       D     SV+ AC
Sbjct: 200 YRNL----FAWTALISGLVQSGN------GVDAFHLFVEMRHEGISVTDPLVLSSVVGAC 249

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A L   ++G Q+H  +   G +   +++ +LIDMY KC +L  A  +F  +  +DV  W+
Sbjct: 250 ANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWT 309

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           ++I G A +G   EAL L+  M  A VKPN VTF  ++ ACSH+GLV +GR  F  M   
Sbjct: 310 SIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVED 369

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +G+ P ++HYTC++D+  R+G LDEA   I  MP+ P    W ALL +CK H N ++A  
Sbjct: 370 HGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVR 429

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
              HLL L+PE+  + +LLSNIYA  G W++VS++RK M     KK PG S I++    H
Sbjct: 430 IADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSH 489

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F AGE+SHP+  EI   + E+   ++  GY P+ S +L  +++++ +E+ L  HSERLA
Sbjct: 490 VFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQE-KERQLFWHSERLA 548

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           +AYGL+   P   IRIVKNLRVCGDCHTV KLIS + NREI +RD  R+HHF+ GNCSC 
Sbjct: 549 VAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCN 608

Query: 653 DYW 655
           D+W
Sbjct: 609 DFW 611



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 163/367 (44%), Gaps = 85/367 (23%)

Query: 4   NPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVF-SLIKQCKN-----IKQLKQI 57
           N P    ++S  ++S   HP+              H VF SL+K C N     +KQ KQ+
Sbjct: 83  NRPHRALSISRSLLSTGFHPD--------------HFVFASLVKACANLGVLHVKQGKQV 128

Query: 58  HTQMLRTGLFFDPYSASKLFTPCALGTFSSL---EYAREMFDQIPQPNLYTWNTLIRAYS 114
           H +      F  P+S   +     +  ++     +Y R +FD I   N  +W T+I  Y+
Sbjct: 129 HAR-----FFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYA 183

Query: 115 SSAEPIQSFMIFLQLVYNSPY-------------------------------FPNEFTFP 143
            S    ++F +F Q  Y + +                                 +     
Sbjct: 184 RSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLS 243

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            V+ A A L  + +G+ +HG+VI   +E  LFISN+LI  YA C DL  A  +F  + +K
Sbjct: 244 SVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRK 303

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC------AKKRDL- 256
           DVVSW S+I G  Q G  E+A+ LY EM +  VKP+EVT V ++ AC      +K R L 
Sbjct: 304 DVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLF 363

Query: 257 -----EFGRWPN--------EALSIFHELQLSKN------VNPDEFTFVSVLSACAQLGA 297
                + G  P+        +  S    L  ++N      VNPDE T+ ++LS+C + G 
Sbjct: 364 RTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGN 423

Query: 298 MDIGVQI 304
             + V+I
Sbjct: 424 TQMAVRI 430


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 343/601 (57%), Gaps = 46/601 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K IH   ++T    +P+    L    A      +E A  +F+ IP  ++  W+ LI  Y+
Sbjct: 269 KGIHGCSVKTLYDTEPHVGGALLDMYA--KCGDIEDAHAIFEMIPHDDVILWSFLISRYA 326

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S +  Q+F +FL+++  S   PNEF+   V++A A +    +G+ IH + IK  +E +L
Sbjct: 327 QSCQNEQAFEMFLRMM-RSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESEL 385

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+ N+L+  YA C ++  +  +F  +   + VSWN++I G+ Q GF E            
Sbjct: 386 FVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAE------------ 433

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                        +ALS+FHE++ +  ++  + TF SVL ACA 
Sbjct: 434 -----------------------------DALSVFHEMRAAHMLST-QVTFSSVLRACAN 463

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
             ++   VQIH+ ++K     +  +  SLID Y KCG +  AL+VF ++   DV  W+++
Sbjct: 464 TSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSI 523

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I+ +A++G    AL+LF RM ++ +K N VTF ++L  C  +GLV++G   FN M   + 
Sbjct: 524 ISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHR 583

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P ++HYTC+V +LGRAG L +A++FI  +P  P   VW ALL +C +H+NV L  YA 
Sbjct: 584 IKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAA 643

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             +L++EP +    VLLSN+YA  G  D V+  RK MR  G+KKE G S +E+ GE+H F
Sbjct: 644 EKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAF 703

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
             G + HP  + I + L+ +  +    GYVP+ + +L  V+EE+ + + L +HSERLA+A
Sbjct: 704 SVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEE-KARMLWVHSERLALA 762

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           YGL    P  PIRI+KNLR C DCHT+ K+ISK+  REI++RD  RFHHF  G CSC DY
Sbjct: 763 YGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDY 822

Query: 655 W 655
           W
Sbjct: 823 W 823



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 47/355 (13%)

Query: 55  KQIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           + +H ++++ G     D + A+ L    A      L  AR +FD +P+ N  ++ TL++ 
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYA--KLGPLATARRLFDGMPERNRVSFVTLMQG 122

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y+   E  ++  +F +L     +  N F    ++K    +    +   IH    K   + 
Sbjct: 123 YALRGEFEEALELFRRL-QREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDR 181

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           + F+  +LI  Y++CG +  A CVF  I  KD V+W +M+S + +    E A+  + +M 
Sbjct: 182 NAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMR 241

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           M   KP                                        NP  F   S L A 
Sbjct: 242 MTGFKP----------------------------------------NP--FVLTSALKAA 259

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
             L +  +G  IH    K       ++  +L+DMY KCG+++ A  +F  +   DV +WS
Sbjct: 260 VCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWS 319

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
            +I+ +A      +A ++F RM  + V PN  + + VL AC++   ++ G    N
Sbjct: 320 FLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHN 374



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 49/295 (16%)

Query: 156 RVGQAIHGMVIKSS--FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
           R G+A+H  V++     + D F +N L++FYA  G LA A  +F  + +++ VS+ +++ 
Sbjct: 62  RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+   G FE+A+EL                              F R   E   + H   
Sbjct: 122 GYALRGEFEEALEL------------------------------FRRLQREGHEVNH--- 148

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                    F   ++L     + A  +   IHA   K G   N ++ T+LID Y+ CG +
Sbjct: 149 ---------FVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAV 199

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA- 392
             A  VF  +  +D   W+ M++ ++       AL+ FS+M+    KPN    T+ L A 
Sbjct: 200 CHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAA 259

Query: 393 -CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            C  S L+ +G +    ++ +Y   P V     ++DM  + G +++A    E +P
Sbjct: 260 VCLSSALLGKG-IHGCSVKTLYDTEPHVG--GALLDMYAKCGDIEDAHAIFEMIP 311


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/693 (34%), Positives = 366/693 (52%), Gaps = 77/693 (11%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL---FFDPYSASKLFTP 79
           PNP T             V S +     +   +++H Q ++ G     F   S   ++  
Sbjct: 199 PNPFTFA----------SVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAK 248

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C L     +E A+ +F+ +   ++ +WNTL+     +   +++  +F +          +
Sbjct: 249 CGL-----VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKM-TQ 302

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T+  VIK  A L Q  + + +H  V+K  F     +  +L   Y+ CG+LA A  +F M
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 200 I-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC-------- 250
             G ++VVSW ++ISG +Q G    A+ L+  M  + V P+E T  A+L A         
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQI 422

Query: 251 -AKKRDLEFGRWPN----------------EALSIFHELQLS------------------ 275
            A+     +   P+                +ALSIF  ++                    
Sbjct: 423 HAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 276 ------------KNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTS 322
                       + + P+EFT  SV+ ACA   A +D G Q HA   K        ++++
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSA 542

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+ MY++ GN+D A  VF     RD+  W++MI+G+A +G   +A++ F +M+ + ++ +
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            VTF  V+  C+H+GLV EG+ +F+ M   + + P ++HY CMVD+  RAG LDE +  I
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
             MP   GA VW  LLGAC++H+NVEL +++   LL LEP +    VLLSNIYA  GKW 
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
              E+RK M    +KKE GCS I++  ++H F+A + SHP+  +IY KL  I+ RLK  G
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y PN S +L  +  ED +E  L  HSERLA+A+GLI+  P  P++IVKNLRVCGDCH V 
Sbjct: 783 YSPNTSFVLHDI-AEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVM 841

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K++S + +REI++RD  RFHHF GG CSC D+W
Sbjct: 842 KMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 69/414 (16%)

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           E+F+ +P+ N+ TW +L+   + +    +   +F ++      +PN FTF  V+ A A  
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEG-IWPNPFTFASVLSAVASQ 214

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +GQ +H   +K      +F+ NSL++ YA CG +  A  VF  +  +D+VSWN+++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN--------- 263
           +G        +A++L+ E      K  + T   V+  CA  + L   R  +         
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334

Query: 264 --------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV- 302
                               +AL+IF     S+NV     ++ +++S C Q G + + V 
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNV----VSWTAIISGCIQNGDIPLAVV 390

Query: 303 ------------------------------QIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                                         QIHA++ K   +    + T+L+  Y+K G+
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGS 450

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-- 390
            + AL +F  ++ +DV  WS M++  A  G    A  LF++M    +KPN  T ++V+  
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           CAC  +G VD+GR  F+ +   Y     +   + +V M  R G +D A    E+
Sbjct: 511 CACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 148/343 (43%), Gaps = 44/343 (12%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCV 196
           +  T   V+KA   +    +G+ +H + +K   +  ++    SL+  Y  CG +     V
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + KK+VV+W S+++G        + + L+  M  E                      
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAE---------------------- 195

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
             G WPN                   FTF SVLSA A  GA+D+G ++HA+  K G + +
Sbjct: 196 --GIWPNP------------------FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSS 235

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            ++  SL++MY KCG ++ A  VF+ +++RD+  W+T++AG  +  C  EAL LF   + 
Sbjct: 236 VFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRA 295

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
              K    T+  V+  C++   +   R   + +   +G        T + D   + G L 
Sbjct: 296 TMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELA 354

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +A+              W A++  C  + ++ LA    S + E
Sbjct: 355 DALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 351/636 (55%), Gaps = 57/636 (8%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PN +TL            +  L+ Q   + Q + +H   +R     D +    L     L
Sbjct: 227 PNASTLVA----------LLPLLAQHGALSQGRAVHAYSVRACSLHD-HKDGVLVGTALL 275

Query: 83  GTFSS---LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
             ++    L YA  +F+ +   N  TW+ L+  +      +++F +F  ++     F + 
Sbjct: 276 DMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSP 335

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            +    ++A A L    +G+ +H ++ KS    DL   NSL+  YA  G +  A  +F  
Sbjct: 336 TSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQ 395

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           +  KD VS+++++SG+VQ G  ++A  ++R+M+  NV+PD  TMV+++ AC+    L+ G
Sbjct: 396 MVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHG 455

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
           +                               C            H  +  +GI     +
Sbjct: 456 K-------------------------------CG-----------HGSVIVRGIASETSI 473

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             +LIDMY KCG +D + ++F  + +RD+  W+TMIAG+ ++G G+EA  LF  M+    
Sbjct: 474 CNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQAC 533

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           +P+ VTF  ++ ACSHSGLV EG+ +F+ M   YG+ P ++HY  MVD+L R G LDEA 
Sbjct: 534 EPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAY 593

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           +FI+ MP+     VWGALLGAC++H+N++L +   S + +L PE  G  VLLSNI++  G
Sbjct: 594 QFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAG 653

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           ++D  +E+R   +  G KK PGCS IE+NG +H F+ G+ SH    EIY +LD I+  + 
Sbjct: 654 RFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDIN 713

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GY  + S +LQ VEEE  +E+AL  HSE+LAIA+G++++   + I + KNLRVCGDCH
Sbjct: 714 KLGYRADTSFVLQDVEEE-EKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCH 772

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           TV K ++ +  R I++RD  RFHHF+ G CSC D+W
Sbjct: 773 TVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 193/441 (43%), Gaps = 68/441 (15%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FDQIP P ++ +N LIRAYS     +   +         P  PN +TFPFV+K
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQ-PNNYTFPFVLK 137

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A + L+  R  +A+H    ++    DLF+S +L+  YA C     A  VF  +  +DVV+
Sbjct: 138 ACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA 197

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN---- 263
           WN+M++G+   G +   I     M+ ++  P+  T+VA+L   A+   L  GR  +    
Sbjct: 198 WNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSV 256

Query: 264 -----------------------------------EALSIFHELQLS------------- 275
                                              EA+++ +E+  S             
Sbjct: 257 RACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRML 316

Query: 276 ------KNVNPDEFTFVSVLSACAQLGA------MDIGVQIHAKMKKQGIKLNCYLTTSL 323
                 K++      F+S  S  + L A      + +G Q+HA + K G+  +     SL
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           + MY K G +D+A  +F  +  +D   +S +++G+   G   EA  +F +MQ   V+P+ 
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            T  +++ ACSH   +  G+     +  V G+         ++DM  + G +D + +  +
Sbjct: 437 ATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 444 KMPIVPGASVWGALLGACKIH 464
            MP     S W  ++    IH
Sbjct: 496 VMPARDIVS-WNTMIAGYGIH 515


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 343/577 (59%), Gaps = 26/577 (4%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           ALG  +    AR +FD+IP P+  ++NTL+  + +S +   +  +F  +        +  
Sbjct: 61  ALGRLAD---ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVV 112

Query: 141 TFPFVIKAAARLVQFRVGQAIH-GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           ++  ++   ++       +A+   M +++S        N+++  +A   D++ A   F  
Sbjct: 113 SWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVS-----WNAMVSGFACSRDMSAAEEWFRN 167

Query: 200 IGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
             +K D V W +M+SG++  G   KAIE +  M + N+    V+  AV++   K      
Sbjct: 168 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL----VSWNAVVAGYVKNSH--- 220

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
               ++AL +F  +    NV P+  T  SVL  C+ L A+  G QIH    K  +  N  
Sbjct: 221 ---ADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLT 277

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           + TSL+ MY KCG+L  A ++F  + +RDV  W+ MI+G+A +G G+EA++LF RM++  
Sbjct: 278 VGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 337

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           V+PN +TF  VL AC H+GL D G   F  M+ +YG+ P V HY+CMVD+L RAG L+ A
Sbjct: 338 VEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
           V+ I  MP  P  S +G LL AC++++N+E AE A   L+E +P++ GA V L+NIYA  
Sbjct: 398 VDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGA 457

Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
            +WD+VS +R+ M+ + + K PG S IE+ G +H+F + +  HP    I+ KL ++  R+
Sbjct: 458 NQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERM 517

Query: 559 KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
           K+ GYVP+   +L  V+E  ++ Q L  HSE+LAI++GLIS  P   +RI KNLRVCGDC
Sbjct: 518 KAMGYVPDLDFVLHDVDET-LKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDC 576

Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           H  AK+ISK+ +REI+LRD  RFHHFRGG+CSC DYW
Sbjct: 577 HNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR--EALDLFSR 373
            C L+T  +    + G+L  A E F +   +    ++ ++AG+A    GR  +A  LF R
Sbjct: 16  TCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYAR-ALGRLADARHLFDR 74

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           +      P+AV++  +L     SG  D  R  F  M PV  VV     +  MV  L ++G
Sbjct: 75  IP----TPDAVSYNTLLSCHFASGDADGARRLFASM-PVRDVVS----WNTMVSGLSKSG 125

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            ++EA      MP+    S W A++       ++  AE
Sbjct: 126 AVEEAKAVFLAMPVRNSVS-WNAMVSGFACSRDMSAAE 162


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 336/602 (55%), Gaps = 54/602 (8%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L+Q   Q+L      D Y+  K            L YA  +F  +P  N  TW+ LI  +
Sbjct: 233 LEQNEEQVLIGTALLDMYAKCK-----------QLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                  ++F +F  ++     F +  +    ++  A L    +G  +H ++ KS    D
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           L  SNSL+  YA  G +  A   F  I  KD +S+ +++SG VQ G  E           
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE----------- 390

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EA  +F ++Q + N+ PD  T VS++ AC+
Sbjct: 391 ------------------------------EAFLVFKKMQ-ACNMEPDIATMVSLIPACS 419

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L A+  G   H  +  +G+ L   +  SLIDMY KCG +D + +VF  + +RDV  W+T
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MIAG+ ++G G+EA  LF  M+     P+ VTF  ++ ACSHSGLV EG+ +F+ M   Y
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G++P ++HY CMVD+L R GLLDEA +FI+ MP+     VWGALLGAC+IH+N++L +  
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              + +L PE  G  VLLSNI++  G++D  +E+R   +V G KK PG S IE+NG +H 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F+ G+ SHP  ++IY +LD I+  +K  GY  + S +LQ +EEE  +E+AL  HSE+LAI
Sbjct: 660 FVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEE-EKEKALLYHSEKLAI 718

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+G++S+   + I + KNLRVCGDCHT  K ++ + NR I++RD  RFHHF+ G CSC +
Sbjct: 719 AFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGN 778

Query: 654 YW 655
           +W
Sbjct: 779 FW 780



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 154/591 (26%), Positives = 241/591 (40%), Gaps = 124/591 (20%)

Query: 17  ISLPR-HPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           + LPR H  P   +     + H  P  S+  + K+ KQ +Q   Q +  G          
Sbjct: 1   MGLPRGHLRP--FSAATAARLHRPPSGSISYEVKDKKQWQQELEQHISRG---------- 48

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
                       L  AR++FD+IP P+   +N LIRAYS    P  + +   + +     
Sbjct: 49  -----------QLALARQVFDRIPAPDARAYNALIRAYSWLG-PFHAAIDLYRSMLRFRV 96

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            PN++TFPFV+KA + LV  R G+ IH     +    DLF+S +LI  Y  C     A  
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  +  +DVV+WN+M++G+   G +  AI    +M+                       
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG-------------------- 196

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
              G  PN +                  T VS+L   AQ GA+  G  IHA   +  ++ 
Sbjct: 197 ---GLRPNAS------------------TLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235

Query: 316 N---CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           N     + T+L+DMY KC  L  A  VFH +  R+   WS +I GF +     EA +LF 
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK 295

Query: 373 RMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            M  E     +A +  + L  C+    +  G    + +    G+   +     ++ M  +
Sbjct: 296 DMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAK 354

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY------------------- 472
           AGL++EA  F +++ +    S +GALL  C  +   E A                     
Sbjct: 355 AGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVS 413

Query: 473 ---ACSHLLELEPE--NHGALVL------------LSNIYAKTGKWDNVSELRKHMRVSG 515
              ACSHL  L+    +HG++++            L ++YAK GK D   ++        
Sbjct: 414 LIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQV-------- 465

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
             K P    +  N      +AG   H L KE  +    +   +K+ G+ P+
Sbjct: 466 FDKMPARDVVSWN----TMIAGYGIHGLGKEATT----LFLGMKNQGFAPD 508


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 333/602 (55%), Gaps = 47/602 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K  H+  ++  L  DPY A  L          SLE A ++F+++P  N   W  +I+ + 
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMN--VYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHL 190

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED-D 173
           + +E    F +F ++   S +  + F    +I+A   +   + G+  HG+ IK +F D +
Sbjct: 191 NFSEEFGVFELFSRM-RRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSN 249

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
            F+  SL+  Y  CG L  A  +F  I  +DVV W+++I+GF + G   ++I ++R+M  
Sbjct: 250 FFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQM-- 307

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                                   L+ +V P+  TF S++ AC+
Sbjct: 308 ----------------------------------------LADSVTPNSVTFASIVLACS 327

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            LG++  G  +H  M + G++L+    TS IDMY KCG +  A  VF  +  ++VF WST
Sbjct: 328 SLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWST 387

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI GF M+G   EAL+LF  M+     PN+VTF +VL ACSHSG ++EG   F  M   Y
Sbjct: 388 MINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDY 447

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P  +HY CMVD+LGRAG +DEA+ FI  MP  PGAS WGALLGAC+IH   ELAE  
Sbjct: 448 GITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEV 507

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              LL LE +  G  V+LSNIYA  G W+ V + R  M   G+ K  G +SIE+  +++ 
Sbjct: 508 AKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYL 567

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F + +       +I S  + +  R++  GYVP+   +L  V++E V+++ L  HSE+LAI
Sbjct: 568 FSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDE-VKQEVLCGHSEKLAI 626

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
            +GL++     PIRI KN+RVCGDCHT +K IS +  R+I++RD  RFHH + G CSC D
Sbjct: 627 VFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGD 686

Query: 654 YW 655
           YW
Sbjct: 687 YW 688



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 181/409 (44%), Gaps = 51/409 (12%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF---SSLEYAREMFDQ 97
           + SL +  K +    Q++ Q+L   L       S LF P   G +    SL  A + F+ 
Sbjct: 18  LLSLFRFTKTLASNHQLNAQILVNAL-----HRSLLFGPMIFGAYIQLGSLHVASKAFNH 72

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I   NL++WNT++ ++S +        +F +++       + F   F +KA   L  F+ 
Sbjct: 73  ITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGK-LVDSFNLVFAVKACFGLSLFQG 131

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
            +  H + IK   E D +++ +L++ Y   G L  A+ VF  +  K+ V W  MI G + 
Sbjct: 132 AKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLN 191

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                   EL+  M     + D   +  ++ AC      + G+        FH L + KN
Sbjct: 192 FSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGK-------TFHGLCIKKN 244

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                              I  N +L TSL+DMY KCG LD AL
Sbjct: 245 F----------------------------------IDSNFFLQTSLVDMYMKCGFLDFAL 270

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           ++F  +  RDV VWS +IAGFA  G   E++ +F +M    V PN+VTF +++ ACS  G
Sbjct: 271 KLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLG 330

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            + +GR     M    GV   VK+YT  +DM  + G +  A     ++P
Sbjct: 331 SLKQGRSVHGYM-IRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP 378



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 137/275 (49%), Gaps = 19/275 (6%)

Query: 32  NGHQHHPHPVFSLIKQCKNI---KQLKQIHTQMLRTGL----FFDPYSASKLFTPCALGT 84
           +G +  P  V  LI+ C N+   K+ K  H   ++       FF   S   ++  C    
Sbjct: 208 SGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGF-- 265

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              L++A ++F++I   ++  W+ +I  ++ +   ++S  +F Q++ +S   PN  TF  
Sbjct: 266 ---LDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVT-PNSVTFAS 321

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           ++ A + L   + G+++HG +I++  E D+    S I  YA CG +  AY VF  I +K+
Sbjct: 322 IVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKN 381

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V SW++MI+GF   G   +A+ L+ EM   N  P+ VT V+VLSAC+    +E      E
Sbjct: 382 VFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIE------E 435

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
             S F  +     + P E  +  ++    + G +D
Sbjct: 436 GWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKID 470



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 122/300 (40%), Gaps = 43/300 (14%)

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           ++  ++ ++    L     +   Y   G L +A   F  I  +++ SWN++++   +   
Sbjct: 34  LNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKC 93

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           F   ++L++ M  E    D   +V  + AC       FG    +   +FH L +      
Sbjct: 94  FYDVLQLFKRMLKEGKLVDSFNLVFAVKAC-------FGLSLFQGAKLFHSLAI------ 140

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
                                     K++ +G   + Y+  +L+++YT+ G+L++A +VF
Sbjct: 141 --------------------------KLRLEG---DPYVAPALMNVYTELGSLEEAHKVF 171

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             V  ++  +W  MI G   +       +LFSRM+ +  + +      ++ AC +     
Sbjct: 172 EEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGK 231

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG+ F         +       T +VDM  + G LD A++  E++       VW A++  
Sbjct: 232 EGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEIS-YRDVVVWSAIIAG 290


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/653 (36%), Positives = 359/653 (54%), Gaps = 35/653 (5%)

Query: 15  PVISLPRHPNPTTLTVNNGHQHH---PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY 71
           P  S  RHP+        G QH         +L+  C + ++  ++H   +R G+  D  
Sbjct: 11  PSPSSTRHPS-------GGVQHGVLTADRAAALLAGCASARRASELHAAAVRAGV--DQD 61

Query: 72  SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
            A       A      L+ A  +  + P P    + + I A+SS      +  +  +++ 
Sbjct: 62  KAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLL 121

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           +    P   T    + A   L    VG+A+HG  +K +   + +++ +L+  YA  GD A
Sbjct: 122 SHGLLPTAHTLSASLPACGGLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGDAA 178

Query: 192 MAYCVF-VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
            A  +F  M     VVS  +M++ + + G  + A  L+  +  +    D +   A++   
Sbjct: 179 AARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSK----DLICWNAMMDGY 234

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA---K 307
                 + GR P+EAL +F  + L   V PDE + V  LSA AQLG  + G  +H+    
Sbjct: 235 T-----QHGR-PSEALRLFRRM-LRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTN 287

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGR 365
              + ++LN  + T+LIDMY KCG+L+ A+ VF  + +  RD+  W+ M+ G+AM+G  R
Sbjct: 288 SSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSR 347

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           EAL  F +++   + P  +TF  VL ACSHSGLVDEGR  F  M   YG+ P V+HY CM
Sbjct: 348 EALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCM 407

Query: 426 VDMLGRAGLLDEAVEFIEKMPIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           VD+LGRAG ++EA E ++ M    P A +W +LL AC++H+N+EL +    HL+     N
Sbjct: 408 VDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLAN 467

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G  VLLSN+YA  G W  V  +R  MR SG++KEPGCS++EV   + +F+AG+ SHP  
Sbjct: 468 SGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRA 527

Query: 545 KEIYSKLDEIVARLKSFGYVPN--RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
            EIY+KL+E+    ++ G+VP           ++   +EQAL +HSE+LA+A+GLIS  P
Sbjct: 528 AEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPP 587

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              I+IVKNLR C DCH V KL+S++  R+I+ RDR RFHHF  G+C+C DYW
Sbjct: 588 GTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 329/587 (56%), Gaps = 64/587 (10%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +FD++P  ++  W  ++  Y  +    ++  +F ++       P      +      
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM-------PKRNVVSWT----- 209

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                                       ++I  YA  G++ +A  +F ++ +++ VSW +
Sbjct: 210 ----------------------------AMISGYAQNGEVNLARKLFEVMPERNEVSWTA 241

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMV---------AVLSACAKKRDLEFGRW 261
           M+ G++Q G  E A EL+  M    V      MV         A  +   K  + + G W
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTW 301

Query: 262 PN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                         EALS F E+ L + V P+  + +S+L+ CA L  +D G ++HA M 
Sbjct: 302 SAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           +    ++ +  ++LI MY KCGNLDKA  VFHT + +D+ +W++MI G+A +G G +AL 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +F  M+ A + P+ +T+   L ACS++G V EGR  FN M     + PG +HY+CMVD+L
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           GR+GL++EA + I+ MP+ P A +WGAL+GAC++H N E+AE+A   LLELEP N G  V
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIY 548
           LLS+IY   G+W++ S++RK +    L K PGCS IE +  +H F +G+  +HP    I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
             L+++   L   GY  + S +L  ++EE  +  +L  HSER A+AYGL+ +    PIR+
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQ-KSHSLRYHSERQAVAYGLLKIPEGMPIRV 659

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +KNLRVCGDCH+  KLI+K+ +REI+LRD  RFHHF+ G CSC DYW
Sbjct: 660 MKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 110/202 (54%), Gaps = 11/202 (5%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS--PYFPN 138
             G    ++ A+ +F+++ + +  TW+ +I+AY  +   +++   F ++++    P +P+
Sbjct: 276 GFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPS 335

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
             +   ++   A L     G+ +H  +++ SF+ D+F  ++LI  Y  CG+L  A  VF 
Sbjct: 336 VIS---ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
               KD+V WNSMI+G+ Q G  E+A+ ++ +M +  + PD +T +  L+AC+    ++ 
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 259 GRWPNEALSIFHELQLSKNVNP 280
           GR       IF+ + ++ ++ P
Sbjct: 453 GR------EIFNSMTVNSSIRP 468



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 26/282 (9%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           N+ I   A  G++  A   F  +  +   S+N++++G+ +    + A+ L+R M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            D  +  A++S  + +R       P+ A ++      S    P   +F S+L    + G 
Sbjct: 78  -DLASYNALISGLSLRRQT----LPDAAAAL-----ASIPFPPSVVSFTSLLRGYVRHGL 127

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +   +++  +M ++       L   L+D     G +++A  +F  +  RDV  W+ M++G
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSG 183

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G   EA  LF  M     K N V++T ++   + +G V+  R  F  M     V  
Sbjct: 184 YCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-- 237

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
               +T M+    +AG +++A E    MP  P A+    ++G
Sbjct: 238 ---SWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 47/233 (20%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREM 94
           V S++  C  +  L   +++H  MLR     D ++ S L T    C      +L+ A+ +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-----NLDKAKRV 390

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F      ++  WN++I  Y+      Q+  IF  +   +   P+  T+   + A +   +
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL-AGMSPDGITYIGALTACSYTGK 449

Query: 155 FRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            + G+ I + M + SS      I     H+           C+  ++G+           
Sbjct: 450 VKEGREIFNSMTVNSS------IRPGAEHY----------SCMVDLLGRS---------- 483

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
                G  E+A +L + M +E   PD V   A++ AC   R+ E   +  + L
Sbjct: 484 -----GLVEEAFDLIKNMPVE---PDAVIWGALMGACRMHRNAEIAEFAAKKL 528


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/661 (35%), Positives = 350/661 (52%), Gaps = 58/661 (8%)

Query: 4   NPPQHMETLSTPVISLPRHPNP-TTLTVNNGHQ----HHPHPVFS-LIKQCKNIKQL--- 54
           +P  ++ T +T +  L R   P   LT  N  +    +  H  FS ++  C +   L   
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +QIH  + +     DP+ A+ L    A     S+  A  +FD++P  NL +WN++I  + 
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYA--KCGSMLLAENVFDEMPHRNLVSWNSMIVGFV 277

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    ++  +F +++      P++ +   V+ A A LV+   G+ +HG ++K      +
Sbjct: 278 KNKLYGRAIGVFREVL---SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLV 334

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           ++ NSL+  Y  CG    A  +F   G +DVV+WN MI G  +   FE+A   ++ M   
Sbjct: 335 YVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM--- 391

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                                  + + V PDE ++ S+  A A 
Sbjct: 392 ---------------------------------------IREGVEPDEASYSSLFHASAS 412

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           + A+  G  IH+ + K G   N  +++SL+ MY KCG++  A +VF   K  +V  W+ M
Sbjct: 413 IAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAM 472

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I  F  +GC  EA+ LF  M    V P  +TF +VL ACSH+G +D+G  +FN M  V+ 
Sbjct: 473 ITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN 532

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + PG++HY CMVD+LGR G L+EA  FIE MP  P + VWGALLGAC  H NVE+     
Sbjct: 533 IKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVA 592

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             L +LEP+N G  +LLSNIY + G  +   E+R+ M ++G++KE GCS I+V      F
Sbjct: 593 ERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVF 652

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
            A + SH   +EIY  L ++   +K  GYV         VE    +EQ+L  HSE+LA+A
Sbjct: 653 NANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGS--EEQSLWCHSEKLALA 710

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           +GL+ + P  P+RI KNLR CGDCHTV K  S+++ REI++RD  RFH F  G+CSCMDY
Sbjct: 711 FGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDY 770

Query: 655 W 655
           W
Sbjct: 771 W 771



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 190/395 (48%), Gaps = 52/395 (13%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQIPQP--NLYT 105
           K++K   QIH+Q++ T    +  S + + T   L     S+ +   +F+  P P  N+ T
Sbjct: 111 KSLKHATQIHSQLVTTN---NHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVT 167

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W TLI   S S +P Q+ + F   +  +  +PN FTF  ++ A A       GQ IH ++
Sbjct: 168 WTTLINQLSRSNKPFQA-LTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALI 226

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
            K  F +D F++ +L+  YA CG + +A  VF  +  +++VSWNSMI GFV+   + +AI
Sbjct: 227 HKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAI 286

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
            ++R  E+ ++ PD+V++ +VLSACA   +L+FG+                         
Sbjct: 287 GVFR--EVLSLGPDQVSISSVLSACAGLVELDFGK------------------------- 319

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
                            Q+H  + K+G+    Y+  SL+DMY KCG  + A ++F     
Sbjct: 320 -----------------QVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGD 362

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           RDV  W+ MI G        +A   F  M    V+P+  +++++  A +    + +G M 
Sbjct: 363 RDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMI 422

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            + +    G V   +  + +V M G+ G + +A +
Sbjct: 423 HSHVLKT-GHVKNSRISSSLVTMYGKCGSMLDAYQ 456



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 47/299 (15%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GK 202
           ++  AA+L   +    IH  ++ ++    L   N+L+  YA CG +     +F       
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
            +VV+W ++I+   +     +A+  +  M    + P+  T  A+L ACA           
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACA----------- 211

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                  H   LS+                        G QIHA + K     + ++ T+
Sbjct: 212 -------HAALLSE------------------------GQQIHALIHKHCFLNDPFVATA 240

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+DMY KCG++  A  VF  +  R++  W++MI GF        A+ +F  +    + P+
Sbjct: 241 LLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV--LSLGPD 298

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            V+ ++VL AC+    +D G+     +    G+V  V     +VDM  + GL ++A + 
Sbjct: 299 QVSISSVLSACAGLVELDFGKQVHGSIVK-RGLVGLVYVKNSLVDMYCKCGLFEDATKL 356



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KS 345
           +L+  A+L ++    QIH+++       +     +L+ +Y KCG++   L +F+T    S
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
            +V  W+T+I   +      +AL  F+RM+   + PN  TF+ +L AC+H+ L+ EG+  
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 406 FNQMEP-VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              +    +   P V   T ++DM  + G +  A    ++MP
Sbjct: 223 HALIHKHCFLNDPFVA--TALLDMYAKCGSMLLAENVFDEMP 262


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 351/646 (54%), Gaps = 82/646 (12%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGL---------FFDP 70
           P+P T+T             SLI+ C  I  LK    +H  +L  GL         F D 
Sbjct: 229 PSPITMT-------------SLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDM 275

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
           YS               +E AR +F ++P  NL +WN +I     +    +SF +F +LV
Sbjct: 276 YS-----------KMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
            +S  F +  T   +++  ++      G+ +HG  I+S FE +L +S +++  Y+ CG L
Sbjct: 325 RSSGGF-DLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSL 382

Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             A  VF  +  ++V++W +M+ G  Q G  E                            
Sbjct: 383 KQATFVFNRMKDRNVITWTAMLVGLAQNGHAE---------------------------- 414

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
                        +AL +F ++Q  + +  +  TFVS++ +CA LG++  G  IH  + +
Sbjct: 415 -------------DALRLFAQMQ-EEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR 460

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVF-HTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            G   +    T+L+DMY KCG ++ A  +F H   S+DV +W++MI G+ M+G G +A+ 
Sbjct: 461 LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVG 520

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           ++ +M E  +KPN  TF ++L ACSHS LV++G   FN ME  + + P  KHY C+VD+L
Sbjct: 521 IYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLL 580

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
            RAG  +EA   IEKMP  PG +V  ALL  C+ H+N+ L       LL L+  N G  +
Sbjct: 581 SRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYI 640

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           +LSNIYA+  +WD V  +R  MR  GLKK PG S +E    +H F AG++SHP  +EIY 
Sbjct: 641 MLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYH 700

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L+ + + +++ GYVP+ S +L+ V+EE ++ + L  HSERLAIA+GL++      IRI 
Sbjct: 701 FLESLRSAVETSGYVPDTSCVLRDVDEE-MKVRMLWGHSERLAIAFGLLTTPAGSLIRIT 759

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLRVCGDCHTV K ISK+  REI++RD  RFHHF  G CSC DYW
Sbjct: 760 KNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 233/517 (45%), Gaps = 69/517 (13%)

Query: 39  HPVFSLIKQC-KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           H   SL+++  KN+  +K  H Q++   L  D + A+KL    A     SLE AR +FDQ
Sbjct: 32  HNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVK--AYSDLRSLEAARYVFDQ 89

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
             QP     N ++  Y  S    ++  +F  L+ +     +  +  F +KA A  + + +
Sbjct: 90  FFQPKGLLCNAMLCGYLQSGRYRETLELF-GLMRSRNLEVDSCSCTFALKACASSLDYEM 148

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  I    ++   E + F+ +S+I F    G +  A  VF  +  KDVV WNS+I G+VQ
Sbjct: 149 GMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQ 208

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSAC--------------------------- 250
            G F+ A +L+ EM    +KP  +TM +++ AC                           
Sbjct: 209 AGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILV 268

Query: 251 --------AKKRDLEFGRW-------------------------PNEALSIFHELQLSKN 277
                   +K  D+E  RW                           E+  +FH L  S  
Sbjct: 269 LTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG 328

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
              D  T VS+L  C+Q  ++  G  +H     +  + N  L+T+++D+Y+KCG+L +A 
Sbjct: 329 -GFDLTTIVSLLQGCSQTASLATGKILHG-CAIRSFESNLILSTAIVDLYSKCGSLKQAT 386

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF+ +K R+V  W+ M+ G A  G   +AL LF++MQE  +  N+VTF +++ +C+H G
Sbjct: 387 FVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLG 446

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
            +  GR     +  + G    + + T +VDM  + G ++ A        I     +W ++
Sbjct: 447 SLKRGRSIHGHLFRL-GFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSM 505

Query: 458 LGACKIHENVELAEYACSHLLE--LEPENHGALVLLS 492
           +    +H +   A      ++E  L+P     L LLS
Sbjct: 506 ITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLS 542


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/571 (35%), Positives = 343/571 (60%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A   F+ + + ++ +WN++I   +      ++   F  ++ ++   P+ F+    + 
Sbjct: 189 VDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALS 248

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM--IGKKDV 205
           A A L +   G+ IHG ++++ F+    + N+LI  YA  G + +A  +     I   DV
Sbjct: 249 ACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDV 308

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +++ ++++G+V+ G    A +++  ++     PD V   A++    +          N+A
Sbjct: 309 IAFTALLNGYVKLGDITPARQIFNSLK----DPDVVAWTAMIVGYVQNG------LNNDA 358

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + +S+   P+ FT  ++LSA + + +++ G QIHA   + G  L+  +  +L  
Sbjct: 359 IEVFKTM-VSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTT 417

Query: 326 MYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY K G+++ A +VF+ ++ +RD   W++MI   A +G G EA++LF +M    +KP+ +
Sbjct: 418 MYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHI 477

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL AC+H GLV++GR +F+ M+ V+ + P + HY CMVD+ GRAGLL EA +F+E 
Sbjct: 478 TYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVEN 537

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P    WG+LL +CK+++NV+LA+ A   LL +EP N GA   L+N+Y+  GKWD+ 
Sbjct: 538 MPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDA 597

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +++RK M+  G+KKE G S +++  + H F   +  HP   EIY  +D+I   +K  G+ 
Sbjct: 598 AKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFA 657

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  +E E V++Q L  HSE+LAIA+G+IS   +  +RI+KNLRVC DCH   K 
Sbjct: 658 PDTESVLHDLEVE-VKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKF 716

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISKL +REI++RD  RFHHF+ G+CSC DYW
Sbjct: 717 ISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 146/319 (45%), Gaps = 52/319 (16%)

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           ++K      +++ N+L++ YA  G    A+ +F  +  K   SWN+++SG+ + G  EKA
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
            +++  + +     D V+   ++         + GR+  +A+ IF ++   K V P +FT
Sbjct: 61  HQVFDLIPVR----DSVSWTTIIVGYN-----QMGRFE-DAIKIFVDMVKDK-VLPTQFT 109

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK--------------- 329
             +VL++CA  G+  IG ++H+ + K G+     +  SL++MY K               
Sbjct: 110 LTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMK 169

Query: 330 ----------------CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
                           CG +D AL  F  +  RD+  W++MIAG   +G   EAL  FS 
Sbjct: 170 LRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSS 229

Query: 374 -MQEAKVKPNAVTFTNVLCACSHSGLVDEGRM----FFNQMEPVYGVVPGVKHYTCMVDM 428
            +++  +KP+  +  + L AC++   +  G+         M    G V        ++ M
Sbjct: 230 ILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVG-----NALISM 284

Query: 429 LGRAGLLDEAVEFIEKMPI 447
             ++G ++ A   IE+  I
Sbjct: 285 YAKSGGVEIARRIIEQSGI 303


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 325/576 (56%), Gaps = 44/576 (7%)

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C       +E AR +F QI QP+L ++N +I  Y+ + E   S  +F +L+ +     N 
Sbjct: 250 CLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKV-NS 308

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            +   +I          + + IHG   KS    +  +S +L   Y+   ++  A  +F  
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDE 368

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
             +K + SWN+MISG+ Q G  EKAI                                  
Sbjct: 369 SSEKSLASWNAMISGYAQNGLTEKAI---------------------------------- 394

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                  S+F E+Q  + V P+  T  S+LSACAQLGA+ +G  +H  + ++  + N ++
Sbjct: 395 -------SLFQEMQKCE-VRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFV 446

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           +T+LIDMY KCG++ +A  +F  +  ++   W+ MI+G+ ++G G EAL+LF+ M  ++V
Sbjct: 447 STALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRV 506

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            P  VTF +VL ACSH+GLV EG   F  M   +G  P  +HY CMVD+LGRAG LD+A+
Sbjct: 507 SPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKAL 566

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           +FI KMP+ PG  VWGALLGAC IH++  LA  A   L EL+P+N G  VLLSNIY+   
Sbjct: 567 DFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQ 626

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
            +   + +R  ++   L K PGC+ IEV   +H F +G+ SHP    IY+ L+++  +++
Sbjct: 627 NYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMR 686

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             G+       L  VEEE+ +E  + +HSE+LAIA+GLI+ EP   IRI+KNLRVC DCH
Sbjct: 687 EAGFQTETGTALHDVEEEE-KELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCH 745

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              K ISK+  R I++RD  RFHHF+ G CSC DYW
Sbjct: 746 NATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 159/349 (45%), Gaps = 47/349 (13%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            +LI +   + QL Q H Q++  GL  D  + +KL     L    +++ A  +F  IP P
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKL--THKLSHLKAIDQASLLFSTIPNP 71

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           +L+ +N LIRA+S +  P  +  ++  L  ++P  P+ FT+ FVI  A+ L    +  A 
Sbjct: 72  DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAH 131

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
               I + F  DLF+ ++++  Y     +A A  VF  + ++D V WN+M+SG V+   F
Sbjct: 132 S---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCF 188

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           ++AI ++ +M    +  D  T+ AVL   A+ +DL  G                      
Sbjct: 189 DEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG-------------------- 228

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
                       Q  AM +G   HA           Y+ T L  +Y+KCG ++ A  +F 
Sbjct: 229 -----------IQCLAMKVGFHSHA-----------YVITGLACLYSKCGEIETARLLFG 266

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
            +   D+  ++ MI+G+        ++ LF  +  +  K N+ +   ++
Sbjct: 267 QIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 339/602 (56%), Gaps = 13/602 (2%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++ +H ++L+ GL   P + + L +  A      L  A  +FD+ P+ ++Y +++L+ A 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRL--LPDALHLFDETPRRDIYIYSSLLTAV 161

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S SA P  +  I   ++      P+ F    V    ARL   R+G+ +H   + S +  D
Sbjct: 162 SHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGD 221

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
             + +SL+  Y  CG       VF  +  K+ V W +++SG+   G  E+A++L+R M  
Sbjct: 222 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 281

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            N+        A++S      +   G     A+ +F E++       D F    V+   A
Sbjct: 282 RNL----FAWTALISGLVNTGE-SVG-----AVELFVEMRRDGVRIDDAFVLSIVIGGSA 331

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L A  +G Q+H    + G   N  +  +LIDMY+KC ++  A EVF  +  RDV  W+T
Sbjct: 332 DLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTT 391

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           M+ G A +G   EAL L+ RM  A  KPN VTF  ++ ACSH+GLV +GR  F  M+  Y
Sbjct: 392 MVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEY 451

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P ++HYTC +D+L R+G L EA E +  MP  P  + WGALL AC  +++ E+    
Sbjct: 452 GITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRI 511

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              LLEL P++    +LLSN+YA  GKWD+V+++RK M    ++KEPG S IE   E   
Sbjct: 512 SDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRL 571

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F AGE    + +EI   L+E+V  ++  GYVP+ S ++  +EE + +E  L LHSERLA+
Sbjct: 572 FHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESE-KEHHLFLHSERLAV 630

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+GLI   P   IR+VKNLRVC DCHTV KLIS++ +R+I++RD  RFHHF GG CSC +
Sbjct: 631 AFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSE 690

Query: 654 YW 655
           +W
Sbjct: 691 FW 692


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 335/611 (54%), Gaps = 56/611 (9%)

Query: 52  KQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQ---IPQ--PNLYT 105
           ++  Q+H  +LRTGL  F P + +  F   A  +  S   A  + D     P   P+ + 
Sbjct: 50  RRFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPS-HRALAVLDHHLTTPHYLPSTFQ 108

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            N+++RA S  ++ ++    FL  V       N FT   ++K    L   R    +H  V
Sbjct: 109 CNSILRALSDPSDALR----FLCRVRALGRRGNAFTLAILLKPRCSLAHAR---QLHANV 161

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +      D  ++ SL+  YA  GD   A  +F  +  +D V+WN +I+ + +    + A+
Sbjct: 162 VAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDAL 221

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           +L+ EM  ++ + +                                        PD+ T 
Sbjct: 222 KLFEEMRGKDSESE----------------------------------------PDDVTC 241

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           + +L AC+ LGA+D G Q+ A  ++ G      +  SLI MY +CG +DKA  VF     
Sbjct: 242 ILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQ 301

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           + V  W+ MI+G A  G G +A+ +F  M  + V P+  TFT VL ACSHSGLVDEG  F
Sbjct: 302 KSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRF 361

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIH 464
           F+ M   YG+ P V+HY C+VD++GRAGLLDEA EF+  +M + P A++W  LLGAC+IH
Sbjct: 362 FDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIH 421

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            +V+L E    +L+EL+ +  G  VLL N YA  G+W  VSE+RK M+  G++  PGC++
Sbjct: 422 GHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTT 481

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           +E NG +H+F+A + +HP   EIY  L EI  +L+  GYVPN S  L  ++ E  +E AL
Sbjct: 482 VEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEG-KESAL 540

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LAIA+ L+     +PIR+ KNLRVC DCH   K+ S +Y R +++RDR RFHHF
Sbjct: 541 TYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHF 600

Query: 645 RGGNCSCMDYW 655
           +GG CSC DYW
Sbjct: 601 QGGKCSCNDYW 611



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 139/323 (43%), Gaps = 48/323 (14%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+K   ++   +Q+H  ++  G   D   A+ L            + AR++FD++P  + 
Sbjct: 144 LLKPRCSLAHARQLHANVVAEGHLRDALLATSLMR--CYANRGDGDGARKLFDEMPVRDA 201

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             WN LI  Y+ +     +  +F ++   +S   P++ T   +++A + L     G+ + 
Sbjct: 202 VAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVW 261

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
               +  +  +L + NSLI  Y  CG +  AY VF    +K VV+W +MISG    GF  
Sbjct: 262 AYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGN 321

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            AI ++ EM   +V PDE T   VLSAC+                               
Sbjct: 322 DAISVFEEMIRSDVAPDEQTFTGVLSACSHS----------------------------- 352

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALE-VF 340
                        G +D G +    M+ + G+K N      ++D+  + G LD+A E V 
Sbjct: 353 -------------GLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVT 399

Query: 341 HTVK-SRDVFVWSTMIAGFAMYG 362
           + +K + D  +W T++    ++G
Sbjct: 400 NEMKVAPDATIWRTLLGACRIHG 422


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/693 (34%), Positives = 365/693 (52%), Gaps = 77/693 (11%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGL---FFDPYSASKLFTP 79
           PNP T             V S +     +   +++H Q ++ G     F   S   ++  
Sbjct: 199 PNPFTFA----------SVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAK 248

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C L     +E A+ +F+ +   ++ +WNTL+     +   +++  +F +          +
Sbjct: 249 CGL-----VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKM-TQ 302

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T+  VIK  A L Q  + + +H  V+K  F     +  +L   Y+ CG+LA A  +F M
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 200 I-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC-------- 250
             G ++VVSW ++ISG +Q G    A+ L+  M  + V P+E T  A+L A         
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQI 422

Query: 251 -AKKRDLEFGRWP----------------NEALSIFHELQLS------------------ 275
            A+     +   P                 +ALSIF  ++                    
Sbjct: 423 HAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 276 ------------KNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTS 322
                       + + P+EFT  SV+ ACA   A +D G Q HA   K        ++++
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSA 542

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+ MY++ GN+D A  VF     RD+  W++MI+G+A +G   +A++ F +M+ + ++ +
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            VTF  V+  C+H+GLV EG+ +F+ M   + + P ++HY CMVD+  RAG LDE +  I
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
             MP   GA VW  LLGAC++H+NVEL +++   LL LEP +    VLLSNIYA  GKW 
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
              E+RK M    +KKE GCS I++  ++H F+A + SHP+  +IY KL  I+ RLK  G
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y PN S +L  +  ED +E  L  HSERLA+A+GLI+  P  P++IVKNLRVCGDCH V 
Sbjct: 783 YSPNTSFVLHDI-AEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVM 841

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K++S + +REI++RD  RFHHF GG CSC D+W
Sbjct: 842 KMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 69/414 (16%)

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           E+F+ +P+ N+ TW +L+   + +    +   +F ++      +PN FTF  V+ A A  
Sbjct: 156 EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEG-IWPNPFTFASVLSAVASQ 214

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +GQ +H   +K      +F+ NSL++ YA CG +  A  VF  +  +D+VSWN+++
Sbjct: 215 GALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM 274

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN--------- 263
           +G        +A++L+ E      K  + T   V+  CA  + L   R  +         
Sbjct: 275 AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFH 334

Query: 264 --------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV- 302
                               +AL+IF     S+NV     ++ +++S C Q G + + V 
Sbjct: 335 LTGNVMTALADAYSKCGELADALNIFSMTTGSRNV----VSWTAIISGCIQNGDIPLAVV 390

Query: 303 ------------------------------QIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
                                         QIHA++ K   +   ++ T+L+  Y+K G+
Sbjct: 391 LFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGS 450

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-- 390
            + AL +F  ++ +DV  WS M++  A  G    A  LF++M    +KPN  T ++V+  
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           CAC  +G VD+GR  F+ +   Y     +   + +V M  R G +D A    E+
Sbjct: 511 CACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 165/391 (42%), Gaps = 46/391 (11%)

Query: 91  AREMFDQIPQPNLYTW-NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           AR   D+IP+ +     N ++  Y+     ++    F  +        +  T   V+KA 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQF-SVARRGGVLVDSATLSCVLKAC 109

Query: 150 ARLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
             +    +G+ +H + +K   +  ++    SL+  Y  CG +     VF  + KK+VV+W
Sbjct: 110 RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
            S+++G        + + L+  M  E                        G WPN     
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAE------------------------GIWPNP---- 201

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                         FTF SVLSA A  GA+D+G ++HA+  K G + + ++  SL++MY 
Sbjct: 202 --------------FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA 247

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG ++ A  VF+ +++RD+  W+T++AG  +  C  EAL LF   +    K    T+  
Sbjct: 248 KCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYAT 307

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           V+  C++   +   R   + +   +G        T + D   + G L +A+         
Sbjct: 308 VIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGS 366

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLE 479
                W A++  C  + ++ LA    S + E
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/538 (40%), Positives = 309/538 (57%), Gaps = 34/538 (6%)

Query: 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISN 178
           P  +  +F  L+  S   P+   +   +   AR    R    +H    K        + N
Sbjct: 59  PQLALRLFDHLL-RSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCN 117

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
            LIH YA+CG L  A  VF    + D V+WNS++ G+   G      E +  M+      
Sbjct: 118 GLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQAR---- 173

Query: 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
           D V+   +++ C +  + E      EA+++F E+  S    PD  T              
Sbjct: 174 DTVSWNTIIAWCVENGEYE------EAIAVFREMLASMECLPDRVTL------------- 214

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAG 357
                       +GI++   L+++LI+MY+KC  ++ A+ VF  + ++ +V  W+ M+AG
Sbjct: 215 ---------FPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAG 265

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           F   GC  +AL+LF+RM+   + PN +TF  VL ACSH G V+EG   F +M  VYG+ P
Sbjct: 266 FTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEP 325

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
            + HY CMVD+  RAGL D+A + I+ MP+ P A+VW AL+GACK H N EL   A   L
Sbjct: 326 DIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHML 385

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
           +E  P +H   VLLSNIYA  G W  V ++RK M   G++K PG SSIE++G IH+F++G
Sbjct: 386 IEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISG 445

Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597
           + SH   ++IY  L E+  +LK  GYVP+ SH+L  +++EDV+E +L LHSE+LAIA+GL
Sbjct: 446 DKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGL 505

Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IS  P  PIRI KNLRVCGDCH   KL+SK+Y R I++RD  RFHHFR G+CSC D+W
Sbjct: 506 ISTAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 31/192 (16%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT-FPFVIKAAA 150
           RE F  +   +  +WNT+I     + E  ++  +F +++ +    P+  T FP       
Sbjct: 164 REFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFP------- 216

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-DVVSWN 209
                  G+ I         E +  +S++LI+ Y+ C  +  A  VF  +G + +V +WN
Sbjct: 217 -------GKGI---------EVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWN 260

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +M++GF   G  EKA+EL+  ME+  + P+++T   VL+AC+       G +  E +  F
Sbjct: 261 AMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSH------GGFVEEGMGCF 314

Query: 270 HELQLSKNVNPD 281
             +     + PD
Sbjct: 315 ERMTKVYGIEPD 326


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 330/587 (56%), Gaps = 64/587 (10%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +FD++P  ++  W  ++  Y  +    ++  +F ++                     
Sbjct: 162 ARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-------------------- 201

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                               + ++    ++I  YA  G++ +A  +F ++ +++ VSW +
Sbjct: 202 --------------------KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTA 241

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMV---------AVLSACAKKRDLEFGRW 261
           M+ G++Q G  E A EL+  M    V      MV         A  +   K  + + G W
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTW 301

Query: 262 PN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                         EALS F E+ L + V P+  + +S+L+ CA L  +D G ++HA M 
Sbjct: 302 SAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           +    ++ +  ++LI MY KCGNLDKA  VFHT + +D+ +W++MI G+A +G G +AL 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +F  M+ A + P+ +T+   L ACS++G V EGR  FN M     + PG +HY+CMVD+L
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           GR+GL++EA + I+ MP+ P A +WGAL+GAC++H N E+AE+A   LLELEP N G  V
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIY 548
           LLS+IY   G+W++ S++RK +    L K PGCS IE +  +H F +G+  +HP    I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
             L+++   L   GY  + S +L  ++EE  +  +L  HSER A+AYGL+ +    PIR+
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQ-KSHSLRYHSERQAVAYGLLKIPEGMPIRV 659

Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +KNLRVCGDCH+  KLI+K+ +REI+LRD  RFHHF+ G CSC DYW
Sbjct: 660 MKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 110/202 (54%), Gaps = 11/202 (5%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS--PYFPN 138
             G    ++ A+ +F+++ + +  TW+ +I+AY  +   +++   F ++++    P +P+
Sbjct: 276 GFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPS 335

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
             +   ++   A L     G+ +H  +++ SF+ D+F  ++LI  Y  CG+L  A  VF 
Sbjct: 336 VIS---ILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH 392

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
               KD+V WNSMI+G+ Q G  E+A+ ++ +M +  + PD +T +  L+AC+    ++ 
Sbjct: 393 TFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKE 452

Query: 259 GRWPNEALSIFHELQLSKNVNP 280
           GR       IF+ + ++ ++ P
Sbjct: 453 GR------EIFNSMTVNSSIRP 468



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 26/282 (9%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           N+ I   A  G++  A   F  +  +   S+N++++G+ +    + A+ L+R M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR--- 77

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
            D  +  A++S  + +R       P+ A ++      S    P   +F S+L    + G 
Sbjct: 78  -DLASYNALISGLSLRRQT----LPDAAAAL-----ASIPFPPSVVSFTSLLRGYVRHGL 127

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +   +++  +M ++       L   L+D     G +++A  +F  +  RDV  W+ M++G
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSG 183

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G   EA  LF  M     K N V++T ++   + +G V+  R  F  M     V  
Sbjct: 184 YCQAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEV-- 237

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
               +T M+    +AG +++A E    MP  P A+    ++G
Sbjct: 238 ---SWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 51/235 (21%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREM 94
           V S++  C  +  L   +++H  MLR     D ++ S L T    C      +L+ A+ +
Sbjct: 336 VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-----NLDKAKRV 390

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFTFPFVIKAAARL 152
           F      ++  WN++I  Y+      Q+  IF  ++L   S   P+  T+   + A +  
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMS---PDGITYIGALTACSYT 447

Query: 153 VQFRVGQAI-HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
            + + G+ I + M + SS      I     H+           C+  ++G+         
Sbjct: 448 GKVKEGREIFNSMTVNSS------IRPGAEHY----------SCMVDLLGRS-------- 483

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
                  G  E+A +L + M +E   PD V   A++ AC   R+ E   +  + L
Sbjct: 484 -------GLVEEAFDLIKNMPVE---PDAVIWGALMGACRMHRNAEIAEFAAKKL 528


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/517 (41%), Positives = 320/517 (61%), Gaps = 12/517 (2%)

Query: 39  HPVFSLI-KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           HP  S++ K C  +K L++IH  +L+TGL   P + S +   CA      + YA  +F Q
Sbjct: 24  HPHLSILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQ 83

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I  PNL++WNT+IR +S S+ P  +  +F+ ++  S   P+  T+P V KA A+L     
Sbjct: 84  IHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHY 143

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +HG VIK   + D FI N++I+ YA CG L+  +  F      D+V+WNSMI G  +
Sbjct: 144 GAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAK 203

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  +++ +L+ EM + N     V+  +++S   +   L       EAL +F ++Q  + 
Sbjct: 204 CGEVDESRKLFDEMPLRNT----VSWNSMISGYVRNGRLR------EALDLFGQMQ-EER 252

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P EFT VS+L+A A+LGA+  G  IH  ++K   +LN  +T S+IDMY KCG++ +A 
Sbjct: 253 IKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAF 312

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           +VF     + +  W+TMI G AM GC  EA+ LFSR++ + ++P+ VTF  VL AC++SG
Sbjct: 313 QVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSG 372

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVD+ + +F+ M   Y + P +KHY+CMVD LGRAGLL+EA E I  MP+ P A +W +L
Sbjct: 373 LVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSL 432

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC+ H NVELA+ A  H+++L+  +    VLLSNIYA + +++   E R  M+   ++
Sbjct: 433 LSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIE 492

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           KEPGCS IEVNGEIH+F+AG   HP  +E+YS L+E+
Sbjct: 493 KEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNEL 529


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 322/575 (56%), Gaps = 45/575 (7%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
            G    L  AR +F+ +   ++ TWN +I  Y  +    ++  +F +L  +     N+ T
Sbjct: 251 FGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVK-ANDIT 309

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  ++     L     G+ IH +V ++ ++ D  ++ +L+  Y  C     A+ +FV +G
Sbjct: 310 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMG 369

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            KDV++W  M   + Q GF                                         
Sbjct: 370 SKDVITWTVMCVAYAQNGF----------------------------------------- 388

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EAL +F E+QL     P   T V+VL  CA L A+  G QIH+ + +   ++   + T
Sbjct: 389 RKEALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVET 447

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY KCG + +A+ VF  +  RD+ VW++M+  +A +G   E L LF++MQ   VK 
Sbjct: 448 ALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKA 507

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +AV+F +VL A SHSG V +G  +F  M   + + P  + Y C+VD+LGRAG + EAV+ 
Sbjct: 508 DAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 567

Query: 442 IEKMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           + K+   +P   +W  LLGAC+ H   + A+ A   +LE +P + GA V+LSN+YA  G 
Sbjct: 568 VLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGD 627

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           WD V+ +RK MR  G+KKEPG SSIE+   +H+FL G+ SHP    IY++LD + + +++
Sbjct: 628 WDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRA 687

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            GY+P+   +L  VE+E  +E  L  HSERLAIA+GLIS  P  P+R++KNLRVC DCHT
Sbjct: 688 AGYIPDTKMILHDVEDER-KEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHT 746

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K ISKL  REIL+RD +RFH+F+ G CSC DYW
Sbjct: 747 ATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 216/492 (43%), Gaps = 71/492 (14%)

Query: 38  PHPVF--SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAR 92
           P   F  +L+++C   KN+   +++H  +   G   +      L    A     S+  A+
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYA--QCGSVPEAQ 59

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++F+ + + +++ W  +I  Y    +  ++  +F Q+       P + T+  ++ A A  
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM-QEEDVMPTKVTYVAILNACAST 118

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              + G  IHG +++  FE D+F+  +LI+ Y  CG +  A+  F  +  +DVVSW +MI
Sbjct: 119 ESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 178

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP---------- 262
           +  VQ   F  A  LYR M+++ V P+++T+  V +A      L  G++           
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVME 238

Query: 263 ------NEALSIFHELQL------------------------------------------ 274
                 N A+++F    L                                          
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRL 298

Query: 275 -SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V  ++ TFV +L+    L ++  G  IH  +K+ G   +  + T+L+ +Y +C   
Sbjct: 299 QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            +A ++F  + S+DV  W+ M   +A  G  +EAL LF  MQ    +P + T   VL  C
Sbjct: 359 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 394 SHSGLVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           +H   + +GR   +  +E  + +   V+  T +++M G+ G + EA+   EKM       
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDIL 475

Query: 453 VWGALLGACKIH 464
           VW ++LGA   H
Sbjct: 476 VWNSMLGAYAQH 487



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 3/195 (1%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K IH  +   G   D   A+ L +    G   +   A ++F  +   ++ TW  +  AY+
Sbjct: 327 KVIHELVKEAGYDRDAVVATALMS--LYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYA 384

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +    ++  +F ++       P   T   V+   A L   + G+ IH  +I++ F  ++
Sbjct: 385 QNGFRKEALQLFQEMQLEGRR-PTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEM 443

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            +  +LI+ Y  CG +A A  VF  + K+D++ WNSM+  + Q G++++ ++L+ +M+++
Sbjct: 444 VVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLD 503

Query: 235 NVKPDEVTMVAVLSA 249
            VK D V+ V+VLSA
Sbjct: 504 GVKADAVSFVSVLSA 518



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD   FV++L  C+    +D G ++H  ++ +G + N  +   LI MY +CG++ +A +V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ +DVF W+ MI  +   G    AL +F +MQE  V P  VT+  +L AC+ +  +
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            +G     Q+    G    V   T +++M  + G +  A +  +++      S W A++ 
Sbjct: 122 KDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMIA 179

Query: 460 ACKIHENVELAEY 472
           AC  H+   LA +
Sbjct: 180 ACVQHDQFALARW 192


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 344/621 (55%), Gaps = 49/621 (7%)

Query: 38  PHPVFSLIKQCK--NIKQLKQ-IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           P   F   + C    I   +Q IH   ++T    +P+    L    A      ++ AR  
Sbjct: 244 PENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYA--KCGDIKDARLA 301

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ IP  ++   + +I  Y+ S +  Q+F +FL+L+  S   PNE++   V++A   +VQ
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM-RSSVLPNEYSLSSVLQACTNMVQ 360

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G+ IH   IK   E DLF+ N+L+ FYA C D+  +  +F  +   + VSWN+++ G
Sbjct: 361 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 420

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G  E                                         EALS+F E+Q 
Sbjct: 421 FSQSGLGE-----------------------------------------EALSVFCEMQA 439

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           ++ +   + T+ SVL ACA   ++    QIH  ++K     +  +  SLID Y KCG + 
Sbjct: 440 AQ-MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 498

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            AL+VF  +  RD+  W+ +I+G+A++G   +AL+LF RM ++ V+ N +TF  +L  C 
Sbjct: 499 DALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCC 558

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
            +GLV+ G   F+ M   +G+ P ++HYTC+V +LGRAG L++A++FI  +P  P A VW
Sbjct: 559 STGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVW 618

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            ALL +C IH+NV L  ++   +LE+EP++    VLLSN+YA  G  D V+ LRK MR  
Sbjct: 619 RALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNI 678

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G++K PG S +E+ GEIH F  G   HP  + I + L+ +  +    GY+P+ + +L  V
Sbjct: 679 GVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDV 738

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           ++E  + + L +HSERLA+AYGL+   P  PIRI+KNLR C DCHT   +ISK+  REI+
Sbjct: 739 DKEQ-KTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREII 797

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF  G CSC DYW
Sbjct: 798 VRDINRFHHFEDGKCSCGDYW 818



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 183/388 (47%), Gaps = 47/388 (12%)

Query: 55  KQIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           + +H  ++R G     D + A+ L      G    L  AR +FD++P+ N+ ++ TL++A
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLN--MYGKLGPLASARRLFDRMPERNMVSFVTLVQA 136

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           ++   +   +  +F +L +   +  N+F    ++K A  +    +   +H    K   + 
Sbjct: 137 HAQRGDFEAAAALFRRLRWEG-HEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH 195

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK--------- 223
           + F+ + LI  Y++C  ++ A  VF  I +KD V W +M+S + +    E          
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCS 255

Query: 224 --AIELYRE-------MEMENVKPD-EVTMVAVLSACAKKRD--LEFGRWP--------- 262
             AI   R+         + + +P     ++ + + C   +D  L F   P         
Sbjct: 256 LLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSF 315

Query: 263 -----------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                       +A  +F  L  S +V P+E++  SVL AC  +  +D G QIH    K 
Sbjct: 316 MISRYAQSNQNEQAFELFLRLMRS-SVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 374

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
           G + + ++  +L+D Y KC ++D +L++F +++  +   W+T++ GF+  G G EAL +F
Sbjct: 375 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 434

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLV 399
             MQ A++    VT+++VL AC+ +  +
Sbjct: 435 CEMQAAQMPCTQVTYSSVLRACASTASI 462



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 135/345 (39%), Gaps = 76/345 (22%)

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-------FRVGQAIHG 163
           R +++ A  +Q     L  +   P  P   +F     A AR +Q        R G+A+HG
Sbjct: 29  RGFAAYAAALQWLEDELTSLAILPSVPGVDSF-----ACARQLQGCIARGDARGGRAVHG 83

Query: 164 MVIKSSFED--DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
            V++       DLF +N L++ Y   G LA A  +F  + ++++VS+ +++    Q G F
Sbjct: 84  HVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDF 143

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E A  L+R +                            RW        HE+        +
Sbjct: 144 EAAAALFRRL----------------------------RWEG------HEV--------N 161

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
           +F   ++L     + A  +   +H+   K G   N ++ + LID Y+ C  +  A  VF+
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN 221

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
            +  +D  VW+ M++ ++   C   A               A + + +  +C+  G+   
Sbjct: 222 GIVRKDAVVWTAMVSCYSENDCPENAFRC------------AQSCSLLAISCARQGIHGC 269

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
                N  EP  G          ++DM  + G + +A    E +P
Sbjct: 270 AIKTLNDTEPHVG--------GALLDMYAKCGDIKDARLAFEMIP 306


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 332/611 (54%), Gaps = 57/611 (9%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           +I Q ++I  + + +G   D    + L   ++ C      SLE AR++FD++   ++  W
Sbjct: 178 DISQGREIEARTVASGYASDSIVQNALINMYSKCG-----SLESARKVFDRLKNRDVIAW 232

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           NT+I  Y+      Q+  +F ++  N P  PN  TF  ++ A   L     G+AIH  V 
Sbjct: 233 NTMISGYAKQGAATQALELFQRMGPNDPK-PNVVTFIGLLTACTNLEDLEQGRAIHRKVR 291

Query: 167 KSSFEDDLFISNSLIHFYAICGD-LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +  +E DL I N L++ Y  C   L  A  VF  +  +DV++WN +I  +VQ G      
Sbjct: 292 EDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYG------ 345

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
                                                 +AL IF ++QL +NV P+E T 
Sbjct: 346 -----------------------------------QAKDALDIFKQMQL-ENVAPNEITL 369

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
            +VLSACA LGA   G  +HA +     K +  L  SL++MY +CG+LD  + VF  ++ 
Sbjct: 370 SNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRD 429

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           + +  WST+IA +A +G  R  L+ F  + +  +  + VT  + L ACSH G++ EG   
Sbjct: 430 KSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQT 489

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F  M   +G+ P  +H+ CMVD+L RAG L+ A   I  MP +P A  W +LL  CK+H 
Sbjct: 490 FLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHN 549

Query: 466 NVELAEYACSHLLELEPEN-HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           + + A      L ELE E+ H  + LLSN+YA+ G+WD+V   RK       +K PGCS 
Sbjct: 550 DTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSY 606

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IE+N  +H+F+AG+ SHP  + I +++  +  ++K  GYVP+   +L  V+EE+ +EQ L
Sbjct: 607 IEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEE-KEQML 665

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LAIAYGLIS  P  P+ IVKNLR C DCH  AK IS++  R+I++RD  RFHHF
Sbjct: 666 CYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHF 725

Query: 645 RGGNCSCMDYW 655
             G+CSC DYW
Sbjct: 726 ENGSCSCKDYW 736



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 198/420 (47%), Gaps = 50/420 (11%)

Query: 49  KNIKQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           K++KQ + +H  +L T L  FD    + L T  A      LE AR+ FD++ +  L TWN
Sbjct: 72  KDLKQGQLLHAMILETRLLEFDIILGTALITMYA--RCRDLELARKTFDEMGKKTLVTWN 129

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSP--YFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            LI  YS + +   +  I+  +V  SP    P+  TF   + A   +     G+ I    
Sbjct: 130 ALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEART 189

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           + S +  D  + N+LI+ Y+ CG L  A  VF  +  +DV++WN+MISG+ + G   +A+
Sbjct: 190 VASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQAL 249

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           EL++ M   + KP+ V                                          TF
Sbjct: 250 ELFQRMGPNDPKPNVV------------------------------------------TF 267

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC-GNLDKALEVFHTVK 344
           + +L+AC  L  ++ G  IH K+++ G + +  +   L++MYTKC  +L++A +VF  ++
Sbjct: 268 IGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMR 327

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
           +RDV  W+ +I  +  YG  ++ALD+F +MQ   V PN +T +NVL AC+  G   +G+ 
Sbjct: 328 TRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKA 387

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
               +         V   + M +M  R G LD+ V     +      S W  L+ A   H
Sbjct: 388 VHALIASGRCKADVVLENSLM-NMYNRCGSLDDTVGVFAAIRDKSLVS-WSTLIAAYAQH 445



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 161/329 (48%), Gaps = 41/329 (12%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G   S+  A  +F  I  PN  +W  ++ A++ +    ++   + ++V      P+   F
Sbjct: 3   GKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMF 61

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              I   +     + GQ +H M++++   E D+ +  +LI  YA C DL +A   F  +G
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           KK +V+WN++I+G+ + G    A+++Y++M                            + 
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDM--------------------------VSKS 155

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P             + + PD  TF S L AC  +G +  G +I A+    G   +  +  
Sbjct: 156 P-------------EGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY+KCG+L+ A +VF  +K+RDV  W+TMI+G+A  G   +AL+LF RM     KP
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           N VTF  +L AC++   +++GR    ++ 
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVR 291



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 64/396 (16%)

Query: 20  PRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSAS-- 74
           P  P P  +T              L+  C N++ L+Q   IH ++   G   D    +  
Sbjct: 257 PNDPKPNVVTF-----------IGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVL 305

Query: 75  -KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
             ++T C+    SSLE AR++F+++   ++ TWN LI AY    +   +  IF Q+   +
Sbjct: 306 LNMYTKCS----SSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              PNE T   V+ A A L   R G+A+H ++     + D+ + NSL++ Y  CG L   
Sbjct: 362 -VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  I  K +VSW+++I+ + Q G     +E + E+  E +  D+VTMV+ LSAC+  
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACS-- 478

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                G    E +  F  +     + PD   F+                           
Sbjct: 479 ----HGGMLKEGVQTFLSMVGDHGLAPDYRHFL--------------------------- 507

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFS 372
                    ++D+ ++ G L+ A  + H +    D   W+++++G  ++   + A  +  
Sbjct: 508 --------CMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVAD 559

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           ++ E + +    T T +    + +G  D+ R   N+
Sbjct: 560 KLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRNR 595



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 116/266 (43%), Gaps = 45/266 (16%)

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            Y  CG +A A  VF  I   + VSW  +++ F + G + +A+  YR M +E ++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
            V  +  C+  +DL+ G+       + H + L   +                        
Sbjct: 61  FVVAIGVCSSSKDLKQGQ-------LLHAMILETRL------------------------ 89

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
                     ++ +  L T+LI MY +C +L+ A + F  +  + +  W+ +IAG++  G
Sbjct: 90  ----------LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNG 139

Query: 363 CGREALDLFSRMQEAK---VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
             R AL ++  M       +KP+A+TF++ L AC+  G + +GR          G     
Sbjct: 140 DHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE-IEARTVASGYASDS 198

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKM 445
                +++M  + G L+ A +  +++
Sbjct: 199 IVQNALINMYSKCGSLESARKVFDRL 224



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG++  AL VFH ++  +   W+ ++A FA  G  REAL  + RM    ++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F   +  CS S  + +G++    +     +   +   T ++ M  R   L+ A +  ++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 446 ---------PIVPGASVWGALLGACKIHENV 467
                     ++ G S  G   GA KI++++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDM 151


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/619 (35%), Positives = 348/619 (56%), Gaps = 83/619 (13%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++  C +I       Q+H  ++R+G   + +  S L   ++ C       L  AR M +
Sbjct: 245 SILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCG-----DLSNARRMLE 299

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            +   +  +WN++I          ++  +F ++++      +EFT+P V+   + ++  R
Sbjct: 300 TMEVDDPVSWNSMIVGCVRQGLGEEALSLF-RIMHLRHMKIDEFTYPSVLNCFSFVMDMR 358

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
              ++H +++K+ FE    ++N+L+  YA  G    A+ VF  +  KDV+SW S+++G V
Sbjct: 359 NAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCV 418

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G +E                                         EAL +F E+++  
Sbjct: 419 HNGSYE-----------------------------------------EALRLFCEMRI-M 436

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            ++PD+    +VLSACA+L  ++ G Q+HA   K G+  +  +  SL+ MY KCG ++ A
Sbjct: 437 GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 496

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
            +VF +++ +DV  W+ +I G+A  G GR+                            H+
Sbjct: 497 NKVFDSMEIQDVITWTALIVGYAQNGRGRD----------------------------HA 528

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+ GR +F  ME VYG+ PG +HY CM+D+LGR+G L EA E + +M + P A+VW A
Sbjct: 529 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 588

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC++H NVEL E A ++L ELEP+N    VLLSN+Y+  GKW+  ++ R+ M++ G+
Sbjct: 589 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 648

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
            KEPGCS IE++ ++H+F++ + SHP   EIYSK+DEI+  +K  GYVP+ +  L  ++E
Sbjct: 649 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 708

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E  +E  L  HSE+LA+A+GL+++ P  PIRI KNLR+CGDCHT  K +S +++R ++LR
Sbjct: 709 EG-KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILR 767

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D   FHHFR G CSC DYW
Sbjct: 768 DSNCFHHFREGACSCSDYW 786



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 54/386 (13%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A      L  AR++F + P  +  TW++LI  Y      +++  +F ++ Y     PN+F
Sbjct: 81  AYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER-PNQF 139

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T+  V++  +  V    G+ IH   IK+ F+ + F+   L+  YA C  +  A  +F + 
Sbjct: 140 TWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199

Query: 201 -GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
             K++ V W +M++G+ Q G   KAIE +R+M  E ++ ++ T  ++L+AC         
Sbjct: 200 PDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGS------- 252

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                                        +SAC        G Q+H  + + G   N ++
Sbjct: 253 -----------------------------ISACG------FGAQVHGCIVRSGFGANVFV 277

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            ++L+DMY+KCG+L  A  +  T++  D   W++MI G    G G EAL LF  M    +
Sbjct: 278 GSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHM 337

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLL 435
           K +  T+ +VL   S    V + R   +    +  V  G + Y      +VDM  + G  
Sbjct: 338 KIDEFTYPSVLNCFS---FVMDMRNAMSVHSLI--VKTGFEAYKLVNNALVDMYAKRGYF 392

Query: 436 DEAVEFIEKMPIVPGASVWGALLGAC 461
           D A +  EKM      S W +L+  C
Sbjct: 393 DYAFDVFEKMTDKDVIS-WTSLVTGC 417



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 16/287 (5%)

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           SN ++   + CG +  A  +F ++  +D  SWN+MI  +   G   +A +L+ E  + + 
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 237 KPDEVTMVAVLSA-CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
               +T  +++S  C    D+       EAL +F E+Q  +   P++FT+ SVL  C+  
Sbjct: 104 ----ITWSSLISGYCRYGCDV-------EALELFWEMQY-EGERPNQFTWGSVLRVCSMY 151

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV-KSRDVFVWSTM 354
             ++ G QIHA   K     N ++ T L+DMY KC  + +A  +F      R+  +W+ M
Sbjct: 152 VLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAM 211

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           + G++  G G +A++ F  M+   ++ N  TF ++L AC        G      +    G
Sbjct: 212 VTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-G 270

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
               V   + +VDM  + G L  A   +E M +    S W +++  C
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS-WNSMIVGC 316


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 343/623 (55%), Gaps = 57/623 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ-IPQ 100
           SL+ +  +++   Q H ++L +G L   P   ++     AL    +      +  + +P 
Sbjct: 12  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 71

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQFRVGQ 159
           P     N  +R  ++S  P +S ++    +  +    P+  +  F +KA+AR        
Sbjct: 72  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTV 131

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H +V++     D+ +  +L+  YA CGDLA A  VF  +  +DV +WNS+++G  QG 
Sbjct: 132 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG- 190

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-----QL 274
                                                     PN AL++FH L     +L
Sbjct: 191 ----------------------------------------TEPNLALALFHRLANSFQEL 210

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                P+E T V+ LSACAQ+G +  G+ +H   K+ G+  N  +  SLIDMY+KCG+L 
Sbjct: 211 PSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLS 270

Query: 335 KALEVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +AL+VFH++K  D  +  ++  I   +M+G G +AL LF  M   +++P+ VT+  VLC 
Sbjct: 271 RALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCG 329

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+HSGLVD+G   FN M     V P +KHY  +VD+LGRAG L EA + +  MP      
Sbjct: 330 CNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIV 385

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W  LLGA K+H  VELAE A + L EL     G  VLLSN+YA   +W +V  +R  MR
Sbjct: 386 LWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMR 445

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
            + ++K PG S  E++G +HKF+ G+  HP  +EIY  L++IV+R+   GY P  S++L 
Sbjct: 446 SNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLH 505

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            + EE+ ++ AL  HSE+LAIA+GLI+  P + +R++KNLR+CGDCH VAKLISK Y R 
Sbjct: 506 DIGEEE-KQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRV 564

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RDR RFH F  G CSC DYW
Sbjct: 565 IVIRDRARFHRFEDGQCSCRDYW 587


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 335/611 (54%), Gaps = 56/611 (9%)

Query: 52  KQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQ---IPQ--PNLYT 105
           ++  Q+H  +LRTGL  F P + +  F   A  +  S   A  + D     P   P+ + 
Sbjct: 36  RRFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPS-HRALAVLDHHLTTPHYLPSTFQ 94

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            N+++RA S  ++ ++    FL  V       N FT   ++K    L   R    +H  V
Sbjct: 95  CNSILRALSDPSDALR----FLCRVRALGRRGNAFTLAILLKPRCSLAHAR---QLHANV 147

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +      D  ++ SL+  YA  GD   A  +F  +  +D V+WN +I+ + +    + A+
Sbjct: 148 VAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDAL 207

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           +L+ EM  ++ + +                                        PD+ T 
Sbjct: 208 KLFEEMRGKDSESE----------------------------------------PDDVTC 227

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           + +L AC+ LGA+D G Q+ A  ++ G      +  SLI MY +CG +DKA  VF     
Sbjct: 228 ILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQ 287

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           + V  W+ MI+G A  G G +A+ +F  M  + V P+  TFT VL ACSHSGLVDEG  F
Sbjct: 288 KSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRF 347

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIH 464
           F+ M   YG+ P V+HY C+VD++GRAGLLDEA EF+  +M + P A++W  LLGAC+IH
Sbjct: 348 FDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIH 407

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            +V+L E    +L+EL+ +  G  VLL N YA  G+W  VSE+RK M+  G++  PGC++
Sbjct: 408 GHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTT 467

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           +E NG +H+F+A + +HP   EIY  L EI  +L+  GYVPN S  L  ++ E  +E AL
Sbjct: 468 VEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEG-KESAL 526

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LAIA+ L+     +PIR+ KNLRVC DCH   K+ S +Y R +++RDR RFHHF
Sbjct: 527 TYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHF 586

Query: 645 RGGNCSCMDYW 655
           +GG CSC DYW
Sbjct: 587 QGGKCSCNDYW 597



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 140/323 (43%), Gaps = 48/323 (14%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+K   ++   +Q+H  ++  G   D   A+ L    A       + AR++FD++P  + 
Sbjct: 130 LLKPRCSLAHARQLHANVVAEGHLRDALLATSLMRCYA--NRGDGDGARKLFDEMPVRDA 187

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             WN LI  Y+ +     +  +F ++   +S   P++ T   +++A + L     G+ + 
Sbjct: 188 VAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVW 247

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
               +  +  +L + NSLI  Y  CG +  AY VF    +K VV+W +MISG    GF  
Sbjct: 248 AYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGN 307

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            AI ++ EM   +V PDE T   VLSAC+                               
Sbjct: 308 DAISVFEEMIRSDVAPDEQTFTGVLSACSHS----------------------------- 338

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALE-VF 340
                        G +D G +    M+ + G+K N      ++D+  + G LD+A E V 
Sbjct: 339 -------------GLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVT 385

Query: 341 HTVK-SRDVFVWSTMIAGFAMYG 362
           + +K + D  +W T++    ++G
Sbjct: 386 NEMKVAPDATIWRTLLGACRIHG 408


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 338/602 (56%), Gaps = 13/602 (2%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           ++ +H ++L+ GL   P + + L +  A      L  A  +FD+ P+ ++Y +++L+ A 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRL--LPDALHLFDETPRRDIYIYSSLLTAV 79

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S SA P  +  I   ++      P+ F    V    ARL   R+G+ +H   + S +  D
Sbjct: 80  SHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGD 139

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
             + +SL+  Y  CG       VF  +  K+ V W +++SG+   G  E+A++L+R M  
Sbjct: 140 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 199

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
            N+        A++S      +         A+ +F E++       D F    V+   A
Sbjct: 200 RNL----FAWTALISGLVNTGE------SVGAVELFVEMRRDGVRIDDAFVLSIVIGGSA 249

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L A  +G Q+H    + G   N  +  +LIDMY+KC ++  A EVF  +  RDV  W+T
Sbjct: 250 DLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTT 309

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           M+ G A +G   EAL L+ RM  A  KPN VTF  ++ ACSH+GLV +GR  F  M+  Y
Sbjct: 310 MVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEY 369

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
           G+ P ++HYTC +D+L R+G L EA E +  MP  P  + WGALL AC  +++ E+    
Sbjct: 370 GITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRI 429

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
              LLEL P++    +LLSN+YA  GKWD+V+++RK M    ++KEPG S IE   E   
Sbjct: 430 SDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRL 489

Query: 534 FLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAI 593
           F AGE    + +EI   L+E+V  ++  GYVP+ S ++  +EE + +E  L LHSERLA+
Sbjct: 490 FHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESE-KEHHLFLHSERLAV 548

Query: 594 AYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
           A+GLI   P   IR+VKNLRVC DCHTV KLIS++ +R+I++RD  RFHHF GG CSC +
Sbjct: 549 AFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSE 608

Query: 654 YW 655
           +W
Sbjct: 609 FW 610


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 354/624 (56%), Gaps = 49/624 (7%)

Query: 35  QHHPHPVFS-LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
            HH  P +S L+     I  LKQ H +++ TG        +KL         +   +   
Sbjct: 3   SHHRSPEYSSLLLAGPRIGPLKQAHARLVVTGHSRCLPLITKLANLAVAAGAAPYAHL-- 60

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +    P  + + +++L RA +    P+ +   +  L+  +  F + F F  V KA A L 
Sbjct: 61  VATSHPASDSFLFSSLARAATHQGLPLAALAFYRCLLSAALPF-SSFAFTAVAKACADLS 119

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             R G  +H   I   F  D F+  +L+  Y+ CG L +A  +F  I  K+VV+WN+MIS
Sbjct: 120 ALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMIS 179

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ Q G  E+ IE+Y+                                         E++
Sbjct: 180 GYEQNGLAEQGIEVYK-----------------------------------------EMK 198

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           ++K V PD  TFV+ LSACAQ GA+D+G ++  ++  + + ++ +L ++L++MY +CG +
Sbjct: 199 VAKAV-PDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVV 257

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           DKA + F  ++ R+V  W++MIAG+ M+G G EA+ L+  M+     PN VTF  VL AC
Sbjct: 258 DKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSAC 317

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGAS 452
           +H+GL+ EGR  F  M+ VYG+ P V+HY  MVDM GRAG L+EA++FI + MP  PG  
Sbjct: 318 AHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPE 377

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VW A+LGACK+H+N  L       L+ LEPEN    VLLSNIYA +GK  +V ++R  M 
Sbjct: 378 VWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMI 437

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
              LKK+ G S IE+ G  H F  GE SH   +EIY  L+E+V R+ + GY+P  +  + 
Sbjct: 438 KRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPE-TESVL 496

Query: 573 LVEEEDVQEQALNLHSERLAIAYGL-ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
              EE+ +E AL  HSE+LA+AYGL +S   + P+R++KNLR+C DCH   K +S + NR
Sbjct: 497 HELEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVENR 556

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI++RD++RFHHF+ G CSC++YW
Sbjct: 557 EIIVRDKHRFHHFKDGKCSCLEYW 580


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/652 (35%), Positives = 362/652 (55%), Gaps = 53/652 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           ++IK C  +  L   KQ+H   L +GL  D    S L        F  L+ AR +FD++P
Sbjct: 79  TVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYV--QFDHLKDARNVFDKLP 136

Query: 100 QP-----------------------------------NLYTWNTLIRAYSSSAEPIQSFM 124
           QP                                   NL +WN +I  ++ S   + + +
Sbjct: 137 QPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVL 196

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
           +F Q ++     P+  +   V+ A   L    +G  IH  VIK     D F+ ++LI  Y
Sbjct: 197 MF-QNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMY 255

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
             C   +    VF  + + DV + N++++G  + G  + A+E++++ +  ++  + V+  
Sbjct: 256 GKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL--NVVSWT 313

Query: 245 AVLSACAKK-RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
           +++++C++  +D+E       AL +F E+Q+ + V P+  T   +L AC  + A+  G  
Sbjct: 314 SMIASCSQNGKDME-------ALELFREMQI-EGVKPNSVTIPCLLPACGNIAALLHGKA 365

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
            H    + GI  + Y+ ++LIDMY KCG +  +   F  + +R++  W++++AG+AM+G 
Sbjct: 366 AHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGK 425

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
             EA+++F  MQ    KP+ V+FT VL AC+  GL +EG  +F+ M   +GV   ++HY+
Sbjct: 426 TFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYS 485

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMV +LGR+G L+EA   I++MP  P + VWGALL +C++H  V+L E A   + ELEP 
Sbjct: 486 CMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPR 545

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
           N G  +LLSNIYA    W  V  +R  MR  GLKK PG S IE+  ++H  LAG+SSHP 
Sbjct: 546 NPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQ 605

Query: 544 CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPS 603
             +I  KL ++   +K  GYVP+   +LQ VEE+D +EQ L  HSE+LA+  GL++ +P 
Sbjct: 606 MPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQD-KEQILCGHSEKLAVVLGLLNTKPG 664

Query: 604 QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P++++KNLR+C DCH V K IS    REI +RD  RFH F+GG CSC DYW
Sbjct: 665 FPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 46/363 (12%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+    P VIK  A L   + G+ +H   + S    D  + +SL+H Y     L  A  V
Sbjct: 72  PDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNV 131

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + +  VV+ +++IS F + G  ++  EL+ +     V+ + V+   ++S        
Sbjct: 132 FDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISG------- 184

Query: 257 EFGRWPN--EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
            F R  +  +A+ +F  + L + + PD  +  SVL A   L    +G+QIH  + KQG+ 
Sbjct: 185 -FNRSGSYLDAVLMFQNMHL-EGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLG 242

Query: 315 LNCYLTTSLIDMYTKC-------------------------------GNLDKALEVFHTV 343
            + ++ ++LIDMY KC                               G +D ALEVF   
Sbjct: 243 PDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQF 302

Query: 344 KSRDVFV--WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
           K  D+ V  W++MIA  +  G   EAL+LF  MQ   VKPN+VT   +L AC +   +  
Sbjct: 303 KGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLH 362

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           G+   +      G+   V   + ++DM  + G +  +    + MP     S W +L+   
Sbjct: 363 GKA-AHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVS-WNSLMAGY 420

Query: 462 KIH 464
            +H
Sbjct: 421 AMH 423



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 7/242 (2%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           L++ + PD     +V+  CA L A+  G Q+H      G+ L+  + +SL+ MY +  +L
Sbjct: 66  LTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHL 125

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A  VF  +    V   S +I+ FA  G  +E  +LF + ++  V+ N V++  ++   
Sbjct: 126 KDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGF 185

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE---FIEKMPIVPG 450
           + SG   +  + F  M  + G+ P     + ++  +G   +    ++   ++ K  + P 
Sbjct: 186 NRSGSYLDAVLMFQNMH-LEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPD 244

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             V  AL+    ++     A        E++  + GA   L    ++ G  DN  E+ K 
Sbjct: 245 KFVVSALI---DMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQ 301

Query: 511 MR 512
            +
Sbjct: 302 FK 303



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/431 (19%), Positives = 153/431 (35%), Gaps = 123/431 (28%)

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           K  +S    I  F +   F   I ++  M  + + PD   +  V+  CA    L+ G+  
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQ- 95

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
                  H   L   +  D     S+L    Q   +     +  K+ + G+      +++
Sbjct: 96  ------MHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGV----VTSSA 145

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFV------WSTMIAGFAMYGCGREALDLFSRMQE 376
           LI  + + G + +  E+F+  ++RD+ V      W+ MI+GF   G   +A+ +F  M  
Sbjct: 146 LISRFARKGRVKETKELFY--QTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHL 203

Query: 377 AKVKPNAVTFTNVLCACSH--------------------------SGLVD---------E 401
             +KP+  + ++VL A                             S L+D         E
Sbjct: 204 EGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASE 263

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV-WGALLGA 460
               FN+M+ V      V     +V  L R GL+D A+E  ++   +    V W +++ +
Sbjct: 264 MSGVFNEMDEV-----DVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIAS 318

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE- 519
           C                                  ++ GK     EL + M++ G+K   
Sbjct: 319 C----------------------------------SQNGKDMEALELFREMQIEGVKPNS 344

Query: 520 -------PGCSSIEVNGEIHKFLAGESSHPLCK---------------EIYSKLDEIVAR 557
                  P C      G I   L G+++H                   ++Y+K   ++A 
Sbjct: 345 VTIPCLLPAC------GNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLAS 398

Query: 558 LKSFGYVPNRS 568
              F  +PNR+
Sbjct: 399 RLCFDMMPNRN 409


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/559 (40%), Positives = 334/559 (59%), Gaps = 46/559 (8%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  + +  ++L RA +    P ++   + +L+  +  F + F F    KA A L   R G
Sbjct: 70  PACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPF-SSFAFTAAAKACADLSALRTG 128

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            A+H   +   F  D F+  +L+  Y+ CG L +A  +F  I  + VV+WN+MISG+ Q 
Sbjct: 129 MAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQN 188

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E+AIE+YR                                         E+Q+++ V
Sbjct: 189 GLAERAIEVYR-----------------------------------------EMQVAQVV 207

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TFV+ LSACAQ GA+D+G ++  ++    + ++ +L ++L++MY +CG + KA +
Sbjct: 208 -PDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARD 266

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            F  ++ R+V  W++MIAG+ M+G G EA+ LF  M+     PN VTF  VL AC+H+GL
Sbjct: 267 WFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGL 326

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGAL 457
           V+EGR  F+ M+ VYG+VP  +HY  MVDM GRAGLLD+A++FI + +P  PG  VW A+
Sbjct: 327 VNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAM 386

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK+H+N  L       L+ LEPEN    VLLSNIYA +GK ++V ++R  M    LK
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLK 446

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K+ G S IE+ G  H F  GE SH   +EIY  L+E++ R+   GYVP    +L  +EEE
Sbjct: 447 KQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVPETDSVLHELEEE 506

Query: 578 DVQEQALNLHSERLAIAYGL-ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
             +E AL  HSE+LA+AYGL +S   + PIR++KNLR+CGDCH   K +S + +REI++R
Sbjct: 507 -EREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVESREIIVR 565

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D++RFHHF+ G CSC++YW
Sbjct: 566 DKHRFHHFKDGKCSCLEYW 584


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 328/568 (57%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E    +F+++P  ++ +W ++I     + +  ++  +F +++  S   P   TF  V+ 
Sbjct: 152 VEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKML-RSGVEPTWSTFACVLS 210

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A  V+F +G  +HG V+K       FIS SLI FYA C  +  A+ +F     K+VV 
Sbjct: 211 ACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVK 270

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W ++++ +V     + A+ ++ +M                         + G  PN++  
Sbjct: 271 WTALLTAYVWNNKHQDALRVFGDMT------------------------KMGALPNQS-- 304

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                           TF   L AC  L A+D G +IH    K G++ + ++  SL+ MY
Sbjct: 305 ----------------TFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMY 348

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           T+CGN++ A+ VF  +  +D+  W+++I G A +G G  AL  F++M    V PN +TFT
Sbjct: 349 TECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFT 408

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACS SG++ +GR FF  +      V   +HY CMVD+LGR G LDEA E +  MP+
Sbjct: 409 GLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPV 468

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
              + +W ALL AC++H N+E+AE A  H+L+LEP    A VLLSNIYA  G+W +VS +
Sbjct: 469 KANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRM 528

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M+  GL K+PG S + + G+ H+FL+ + SHPL + IY KLD +  +LK FGYVP++
Sbjct: 529 RVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQ 588

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
              L  VE+E  +E+ L+ HSERLAIA+GL+S      I ++KNLRVCGDCH+V KL+SK
Sbjct: 589 KFALHDVEDEQ-KEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSK 647

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R+I++RD  RFHHF+ G CSC DYW
Sbjct: 648 IVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 8/241 (3%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           Q+H  +++ G FF  + +  L T  A      +E+A ++F++    N+  W  L+ AY  
Sbjct: 223 QVHGHVVKLGCFFHEFISVSLITFYA--NCMKIEHAHKIFNETLTKNVVKWTALLTAYVW 280

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           + +   +  +F  +       PN+ TF   +KA   L     G+ IH M IK   E D+F
Sbjct: 281 NNKHQDALRVFGDMTKMGA-LPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVF 339

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + NSL+  Y  CG++  A  VF  I +KD+VSWNS+I G  Q GF   A+  + +M    
Sbjct: 340 VGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRG 399

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FVSVLSACAQ 294
           V P+E+T   +LSAC++   L  GR   E +S +     S  + P  +   V +L  C +
Sbjct: 400 VDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYK----SNVLRPQHYACMVDILGRCGK 455

Query: 295 L 295
           L
Sbjct: 456 L 456



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N +L T +I  YT+   L  AL++F  +  RDV  W++MI G    G    A  LF  M 
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP 101

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           E     N +++T ++      G V+  +  F  M      V  V  +  MV      G +
Sbjct: 102 E----KNVISWTTMVNGYLKFGRVELAQRLFLDMH-----VKDVAAWNAMVHGYFENGRV 152

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE--LEP 482
           +E V   E+MP+    S W +++G   ++   E A +    +L   +EP
Sbjct: 153 EEGVRLFEEMPVRDVIS-WTSMIGGLDLNGKSEEALFVFKKMLRSGVEP 200


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 341/623 (54%), Gaps = 58/623 (9%)

Query: 41   VFSLIKQCKNIKQ----LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
            V S+++ C ++        QIH   ++ G+  D + ++ L           +E A  +F 
Sbjct: 1010 VASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLID--VYSKSGKMEEAEFLFV 1067

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
                 +L +WN ++  Y  S +  ++  +++ L+  S    N+ T     KAA  LV  +
Sbjct: 1068 NQDGFDLASWNAMMHGYIVSGDFPKALRLYI-LMQESGERANQITLANAAKAAGGLVGLK 1126

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             G+ I  +V+K  F  DLF+ + ++  Y  CG++                          
Sbjct: 1127 QGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM-------------------------- 1160

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
                 E A  ++ E+      PD+V    ++S C +    E       AL  +H ++LSK
Sbjct: 1161 -----ESARRIFNEIP----SPDDVAWTTMISGCVENGQEE------HALFTYHHMRLSK 1205

Query: 277  NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKCGN 332
             V PDE+TF +++ AC+ L A++ G QIHA      +KLNC    ++ TSL+DMY KCGN
Sbjct: 1206 -VQPDEYTFATLVKACSLLTALEQGRQIHANT----VKLNCAFDPFVMTSLVDMYAKCGN 1260

Query: 333  LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
            ++ A  +F    +  +  W+ MI G A +G   EAL  F  M+   V P+ VTF  VL A
Sbjct: 1261 IEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSA 1320

Query: 393  CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
            CSHSGLV E    F  M+ +YG+ P ++HY+C+VD L RAG + EA + I  MP    AS
Sbjct: 1321 CSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASAS 1380

Query: 453  VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
            ++  LL AC++  + E  +     LL LEP +  A VLLSN+YA   +W+NV+  R  MR
Sbjct: 1381 MYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMR 1440

Query: 513  VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             + +KK+PG S +++  ++H F+AG+ SH     IY+K++ I+ R++  GY+P+    L 
Sbjct: 1441 KANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALV 1500

Query: 573  LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
             VEEED +E +L  HSE+LAIAYGL+   PS  +R++KNLRVCGDCH   K ISK++ RE
Sbjct: 1501 DVEEED-KECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFERE 1559

Query: 633  ILLRDRYRFHHFRGGNCSCMDYW 655
            ++LRD  RFHHFR G CSC DYW
Sbjct: 1560 VVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 201/446 (45%), Gaps = 55/446 (12%)

Query: 42   FSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            FS+++       L   K+ H ++L +G   D +  + L T        SL  AR++FD  
Sbjct: 630  FSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLIT--MYSKCGSLSSARKLFDTT 687

Query: 99   PQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            P    +L TWN ++ A++  A     F +F +L+  S       T   V K         
Sbjct: 688  PDTSRDLVTWNAILSAHADKAR--DGFHLF-RLLRRSFVSATRHTLAPVFKMCLLSASPS 744

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
              +++HG  +K   + D+F++ +L++ YA  G +  A  +F  +G +DVV WN M+  +V
Sbjct: 745  AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL---------EFGR------- 260
              G   +A+ L+ E     ++PD+VT+  +      K+++          +G        
Sbjct: 805  DTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDD 864

Query: 261  ---------WPNEALSIFHEL------------QLSKNVNPDEFTFVSVLSACAQLGAMD 299
                     W N+ LS F +              ++  V  D  TFV +LS  A L  ++
Sbjct: 865  DDDGSDVIAW-NKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLE 923

Query: 300  IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            +G QIH  + + G+     +   LI+MY K G++ +A  VF  +   D+  W+TMI+G A
Sbjct: 924  LGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 360  MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV---YGVV 416
            + G    ++ +F  +    + P+  T  +VL ACS  G    G     Q+       GVV
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG---GGCHLATQIHACAMKAGVV 1040

Query: 417  PGVKHYTCMVDMLGRAGLLDEAVEFI 442
                  T ++D+  ++G ++EA EF+
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEA-EFL 1065



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 177/394 (44%), Gaps = 62/394 (15%)

Query: 102  NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
            ++  WN  +  +    E  ++   F+ ++ NS    +  TF  ++   A L    +G+ I
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMI-NSRVACDGLTFVVMLSVVAGLNCLELGKQI 928

Query: 162  HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
            HG+V++S  +  + + N LI+ Y   G ++ A  VF  + + D+VSWN+MISG    G  
Sbjct: 929  HGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLE 988

Query: 222  EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
            E ++ ++ ++    + PD+ T+ +VL AC+       G                      
Sbjct: 989  ECSVGMFVDLLRGGLLPDQFTVASVLRACSS-----LG---------------------- 1021

Query: 282  EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341
                          G   +  QIHA   K G+ L+ +++T+LID+Y+K G +++A  +F 
Sbjct: 1022 --------------GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFV 1067

Query: 342  TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
                 D+  W+ M+ G+ + G   +AL L+  MQE+  + N +T  N   A +  GLV  
Sbjct: 1068 NQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLAN--AAKAAGGLVG- 1124

Query: 402  GRMFFNQMEPVYGVVPGVKH--------YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
                  Q + +  VV  VK          + ++DM  + G ++ A     ++P  P    
Sbjct: 1125 ----LKQGKQIQAVV--VKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVA 1177

Query: 454  WGALLGACKIHENVELAEYACSH--LLELEPENH 485
            W  ++  C  +   E A +   H  L +++P+ +
Sbjct: 1178 WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEY 1211



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 59/281 (20%)

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           +RA +S+A P   F+    L+++ P +   F+   +++ A       +G+  H  ++ S 
Sbjct: 606 LRAATSTANP---FIPPAHLIHSIPQW---FS---ILRHAIAASDLPLGKRAHARILTSG 656

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIEL 227
              D F++N+LI  Y+ CG L+ A  +F       +D+V+WN                  
Sbjct: 657 HHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWN------------------ 698

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--VNPDEFTF 285
                            A+LSA A K           A   FH  +L +   V+    T 
Sbjct: 699 -----------------AILSAHADK-----------ARDGFHLFRLLRRSFVSATRHTL 730

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
             V   C    +      +H    K G++ + ++  +L+++Y K G + +A  +F  +  
Sbjct: 731 APVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGL 790

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           RDV +W+ M+  +   G   EAL LFS      ++P+ VT 
Sbjct: 791 RDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL 831


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 342/566 (60%), Gaps = 19/566 (3%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAA 149
           AR +F+++       WN +I  Y  S     +F +F ++V  S   P +EFTF  V+ A 
Sbjct: 251 ARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV--SEKVPLDEFTFTSVLSAC 308

Query: 150 ARLVQFRVGQAIHGMVIK--SSF--EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           A    F  G+++HG +I+   +F  E  L ++N+L+  Y+  G + +A  +F  +  KDV
Sbjct: 309 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDV 368

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWN+++SG++  G  +KA+E+++ M  +N    +++ + ++S          G    +A
Sbjct: 369 VSWNTILSGYIDSGCLDKAVEVFKVMPYKN----DLSWMVMVSGYVH------GGLSEDA 418

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L +F++++ +++V P ++T+   ++AC +LGA+  G Q+HA + + G + +     +L+ 
Sbjct: 419 LKLFNQMR-AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLT 477

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG ++ A  VF  + + D   W+ MI+    +G GREAL+LF +M    + P+ ++
Sbjct: 478 MYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 537

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  +L AC+H+GLVDEG  +F  M+  +G+ PG  HY  ++D+LGR+G + EA + I+ M
Sbjct: 538 FLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTM 597

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P  S+W A+L  C+ + ++E   YA   L  + P++ G  +LLSN Y+  G+W + +
Sbjct: 598 PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAA 657

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK MR  G+KKEPGCS IEV  +IH FL G++ HP  +E+Y  L+ I AR++  GYVP
Sbjct: 658 RVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVP 717

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           +   +L  +E  + +E  L  HSE+LA+ +GL+ + P   + ++KNLR+CGDCHT    +
Sbjct: 718 DTKFVLHDMEPHE-KEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFM 776

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSC 651
           SK   REI++RD  RFHHF+ G CSC
Sbjct: 777 SKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 183/437 (41%), Gaps = 57/437 (13%)

Query: 70  PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT--WNTLIRAYSSSAEPIQSFMIFL 127
           P  A+ L    A      L  A   FD +P     T   N ++ A++ ++    +  +F 
Sbjct: 92  PSPATSLVA--AQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFH 149

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA--IHGMVIKSSFEDDLFISNSLIHFYA 185
            L+ +    P++++F  +I A  ++          +H  V+KS     L +SN+LI  Y 
Sbjct: 150 ALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYM 209

Query: 186 IC----------------------------------GDLAMAYCVFVMI-GKKDVVSWNS 210
            C                                  GD+  A  VF  + GK DVV WN+
Sbjct: 210 KCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV-WNA 268

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MISG+VQ G    A EL+R M  E V  DE T  +VLSACA       G+  +  +    
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQI---- 324

Query: 271 ELQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMY 327
            ++L  N  P+    V  ++++  ++ G + I  +I   M  K  +  N  L+      Y
Sbjct: 325 -IRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSG-----Y 378

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
              G LDKA+EVF  +  ++   W  M++G+   G   +AL LF++M+   VKP   T+ 
Sbjct: 379 IDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYA 438

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
             + AC   G +  GR     +    G          ++ M  + G +++A      MP 
Sbjct: 439 GAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLTMYAKCGAVNDARLVFLVMPN 497

Query: 448 VPGASVWGALLGACKIH 464
           +   S W A++ A   H
Sbjct: 498 LDSVS-WNAMISALGQH 513


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/596 (38%), Positives = 340/596 (57%), Gaps = 45/596 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           LE AR +F+++      TWNT++  Y+  A  ++        +      P   +  + I 
Sbjct: 89  LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI------PEPDSVSYNIM 142

Query: 148 AAARLVQFRVGQAI---HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
               L  + V  A+   + M +K     D+   N+LI  +A  G +  A+ +F ++ +K+
Sbjct: 143 LVCYLRSYGVEAALAFFNKMPVK-----DIASWNTLISGFAQNGQMQKAFDLFSVMPEKN 197

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---- 260
            VSW++MISG+V+ G  E A ELY+ + M++V    V   A+L+   K   +E       
Sbjct: 198 GVSWSAMISGYVEHGDLEAAEELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQ 253

Query: 261 ---------W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
                    W              + L +F  + +   V P+  +  SVL  C+ L A+ 
Sbjct: 254 RMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCSNLSALP 312

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
           +G Q+H  + K  +  +    TSLI MY KCG+LD A ++F  +  +DV  W+ MI+G+A
Sbjct: 313 LGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYA 372

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
            +G GR+AL LF +M+   +KP+ +TF  V+ AC+H+G VD G  +F  M+  +G+    
Sbjct: 373 QHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKP 432

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
            HYTC++D+LGRAG LDEAV  I++MP  P A+++G LLGAC+IH+N++LAE+A  +LL 
Sbjct: 433 VHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLN 492

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           L+P +    V L+NIYA T KWD V+++RK M+   + K PG S IE+    H+F + + 
Sbjct: 493 LDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDR 552

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
            HP    I+ KL+E+  ++K  GYVP+    L  VEEE  +E+ L  HSE+LAIA+GL+ 
Sbjct: 553 LHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEH-KEKLLLWHSEKLAIAFGLMK 611

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             P  PIR+ KNLRVCGDCH   K IS +  REI++RD  RFHHFR G CSC DYW
Sbjct: 612 TAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 153/317 (48%), Gaps = 38/317 (11%)

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ-GGFFEKAIELYRE 230
           D + ++ ++  F   C DL  A  VF  +  +  V+WN+M+SG+ +  G  ++A EL+ +
Sbjct: 72  DVVSLNKTIASFVRAC-DLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLE-----FGRWPNEALSIFHEL--------QLSK- 276
           +     +PD V+   +L    +   +E     F + P + ++ ++ L        Q+ K 
Sbjct: 131 IP----EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKA 186

Query: 277 ----NVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
               +V P++   ++ +++S   + G ++   +++   K  G+K +  + T+++  Y K 
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY---KNVGMK-SVVVETAMLTGYMKF 242

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G ++ A  +F  +  +++  W++MIAG+       + L +F  M E++V+PN ++ ++VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC---MVDMLGRAGLLDEAVEFIEKMPI 447
             CS+   +  GR    QM  +    P  K  T    ++ M  + G LD A +   +MP 
Sbjct: 303 LGCSNLSALPLGR----QMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 448 VPGASVWGALLGACKIH 464
               S W A++     H
Sbjct: 359 KDVIS-WNAMISGYAQH 374


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 344/574 (59%), Gaps = 15/574 (2%)

Query: 84   TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFT 141
            +FSS+E A  +FD + + ++ +WN +I AY+      +S   F  ++ ++N     N  T
Sbjct: 523  SFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNET---NSTT 579

Query: 142  FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
               ++   + +   + G+ IHG+V+K   + ++ I N+L+  Y+  G    A  VF  + 
Sbjct: 580  LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 639

Query: 202  KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            ++D++SWNSM++ +VQ G     +++  E+ ++  KPD VT  A++   A+  +      
Sbjct: 640  ERDLISWNSMMACYVQDGKCLDGLKILAEL-LQMGKPDRVTWNALIGGHAENEE------ 692

Query: 262  PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            PNEA+  + +L   K +  +  T VS L+A A L  ++ G Q+H  + K G + + ++T 
Sbjct: 693  PNEAVKAY-KLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTN 750

Query: 322  SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            + +DMY KCG +   L++     +R    W+ +I+ FA +GC ++A + F  M +   KP
Sbjct: 751  AAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKP 810

Query: 382  NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            + VTF ++L AC+H GLVDEG  +++ M   +GV PG++H  C++D+LGR+G L  A  F
Sbjct: 811  DHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGF 870

Query: 442  IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
            I++MP+ P    W +LL AC+IH N+ELA     HLLEL+P +  A VL SN+ A +GKW
Sbjct: 871  IKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKW 930

Query: 502  DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            ++V  LRK M  + +KK+P CS +++  ++H F  GE  HP    I +KL E++   K  
Sbjct: 931  EDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 990

Query: 562  GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
            GYVP+ S  L  ++EE  +    N HSERLA+A+GLI+   S  +RI KNLRVCGDCH+V
Sbjct: 991  GYVPDTSFALHDMDEEQKEYNLWN-HSERLALAFGLINTPESSTLRIFKNLRVCGDCHSV 1049

Query: 622  AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K +S +  R+I+LRD YRFHHF GG CSC DYW
Sbjct: 1050 YKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 159/394 (40%), Gaps = 106/394 (26%)

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           + G  IH  +I + F  DL ++  LI FY   GD+  A  VF  + ++ VVSW +M+SG+
Sbjct: 47  KQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGY 106

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE--FG--------RW---- 261
            Q G FEKA  L+ +M    VK +   +V   S C K  D    FG         W    
Sbjct: 107 SQNGRFEKAFVLFSDMRHCGVKANH-ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMI 165

Query: 262 --------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK--- 310
                    +++  +F  + L   + PD +T  SVL A A+ G + I  QIH  + +   
Sbjct: 166 GGYAVQGFADDSFCMFRSM-LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGY 224

Query: 311 ------QGIKLNCY--------------------------------------LTTSLIDM 326
                  G+ +N Y                                      +  +LIDM
Sbjct: 225 GSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDM 284

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG---------------------- 364
           Y K G ++ A   F  ++ ++V  W+++I+G+A +G G                      
Sbjct: 285 YAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWST 344

Query: 365 -----------REALDLFSRMQEAKVKPNAVTFTNVLCACSHSG-LVDEGRMFFNQMEPV 412
                       EA+ LF +M    V+PN     +++ ACS SG + DEG      +   
Sbjct: 345 MLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKT 404

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            G++  V   T +V   G  GL+  A +  E+MP
Sbjct: 405 -GILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 437



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 208/467 (44%), Gaps = 33/467 (7%)

Query: 41  VFSLIKQCKNIKQLK----QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           V SLI  C     +     Q+H  +++TG+  D Y  + L      G+   +  A+++F+
Sbjct: 377 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVH--FYGSIGLVYNAQKLFE 434

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  N+ +W +L+  YS S  P +   ++ Q +       N+ TF  V  +   L    
Sbjct: 435 EMPDHNVVSWTSLMVGYSDSGNPGEVLNVY-QRMRQEGVSGNQNTFATVTSSCGLLEDQV 493

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G  + G +I+  FED + ++NSLI  ++    +  A  VF  + + D++SWN+MIS + 
Sbjct: 494 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 553

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +++  +  M   + + +  T+ ++LS C+   +L++GR         H L +  
Sbjct: 554 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRG-------IHGLVVKL 606

Query: 277 NVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            ++ +     ++L+  ++ G + D  +   A  ++  I  N  +   + D   KC +  K
Sbjct: 607 GLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD--GKCLDGLK 664

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
            L     +   D   W+ +I G A      EA+  +  ++E  +  N +T  + L A ++
Sbjct: 665 ILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATAN 723

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
             +++EG+     +  + G    +      +DM G+ G + + ++ + + PI      W 
Sbjct: 724 LAVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWN 781

Query: 456 ALLGACKIHENVELAEYACSHLLELEPE-------------NHGALV 489
            L+ A   H   + A      +L+L P+             NHG LV
Sbjct: 782 ILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLV 828



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 120/293 (40%), Gaps = 28/293 (9%)

Query: 279 NP---DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           NP   D   ++ +L  C    A   G  IH  +   G   + +L T LI  Y K G++  
Sbjct: 24  NPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIA 83

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACS 394
           A  VF  +  R V  W+ M++G++  G   +A  LFS M+   VK N A+   +  C   
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKM 143

Query: 395 HSGLVDEGRMF------FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
                  G M       +N M   Y V        CM   + R GL+ +         ++
Sbjct: 144 EDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL---GSVL 200

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
             ++  G L+ A +IH  +    Y    ++           LL N YAK G   +  +LR
Sbjct: 201 RASAEGGGLIIANQIHGIITQLGYGSYDIVT---------GLLINAYAKNGSLRSAKDLR 251

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           K M    LKK+   S+  + G  H+ +    +  +  ++Y+K  EI    ++F
Sbjct: 252 KGM----LKKDLFSSTALITGYAHEGIYTMGNALI--DMYAKSGEIEDAKRAF 298


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/664 (34%), Positives = 366/664 (55%), Gaps = 63/664 (9%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           IK   QIH  +L++G   D Y A+ L        F  +  A  +F  +   ++ TWN+++
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYV--RFGKMPEAAVIFGNLEGKDIVTWNSML 233

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             +  +    ++   F  L  N+   P++ +   +I A+ RL     G+ IH   IK+ F
Sbjct: 234 TGFIQNGLYSEALEFFYDL-QNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF 292

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           + ++ + N+LI  YA C  ++     F ++  KD++SW +  +G+ Q   + +A+EL R+
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQ 352

Query: 231 MEMENVKPDEVTMVAVLSACAK---------------KRDLEFGRWPNEALSIFHE---- 271
           ++ME +  D   + ++L AC                 +  L      N  + ++ E    
Sbjct: 353 LQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGII 412

Query: 272 ---LQLSKNVN-PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN----------- 316
              +++ +++   D  ++ S++S     G  +  +++ + MK+ G++ +           
Sbjct: 413 DYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV 472

Query: 317 CYLTT------------------------SLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           C L+T                        +L+DMY +CG+++ A ++F   K+R++ +W+
Sbjct: 473 CSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWT 532

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            MI+ + M+G G  A++LF RM++ K+ P+ +TF  +L ACSHSGLV+EG+ F   M+  
Sbjct: 533 AMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCE 592

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           Y + P  +HYTC+VD+LGR   L+EA + ++ M   P   VW ALLGAC+IH N E+ E 
Sbjct: 593 YQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEV 652

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
           A   LLEL+ +N G  VL+SN++A  G+W +V E+R  M+ SGL K PGCS IEV  +IH
Sbjct: 653 AAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIH 712

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
            FL+ +  HP C +IY KL ++  +LK   GYV     +L  V EE+ + Q L  HSERL
Sbjct: 713 AFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEE-KVQMLYGHSERL 771

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           AIAYGL++     PIR+ KNLRVCGDCH+   L+S+ + RE+++RD  RFHHF+ G CSC
Sbjct: 772 AIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSC 831

Query: 652 MDYW 655
            D+W
Sbjct: 832 GDFW 835



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 44/322 (13%)

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           G   S+  A  +FD++ + +++TWN ++  Y S+ E + +  ++ ++ +    F + +TF
Sbjct: 3   GKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSF-DSYTF 61

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF-VMIG 201
           P ++KA   +     G  IHG+ IK   +  +F+ NSL+  YA C D+  A  +F  M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           + DVVSWNS+IS +   G                                          
Sbjct: 122 RNDVVSWNSIISAYSGNGM----------------------------------------- 140

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EAL +F E+ L   V  + +TF + L AC     + +G+QIHA + K G  L+ Y+  
Sbjct: 141 CTEALCLFSEM-LKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVAN 199

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ MY + G + +A  +F  ++ +D+  W++M+ GF   G   EAL+ F  +Q A +KP
Sbjct: 200 ALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKP 259

Query: 382 NAVTFTNVLCACSHSGLVDEGR 403
           + V+  +++ A    G +  G+
Sbjct: 260 DQVSIISIIVASGRLGYLLNGK 281



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 7/214 (3%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + S++  C+ +    ++K+IH   +R GL  DP   + +      G    ++YA  +F+ 
Sbjct: 365 IGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIID--VYGECGIIDYAVRIFES 421

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           I   ++ +W ++I  Y  +    ++  +F  +   +   P+  T   ++ A   L   + 
Sbjct: 422 IECKDVVSWTSMISCYVHNGLANKALEVFSSM-KETGLEPDYVTLVSILSAVCSLSTLKK 480

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IHG +I+  F  +  ISN+L+  YA CG +  AY +F     ++++ W +MIS +  
Sbjct: 481 GKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGM 540

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            G+ E A+EL+  M+ E + PD +T +A+L AC+
Sbjct: 541 HGYGEAAVELFMRMKDEKIIPDHITFLALLYACS 574



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 43/220 (19%)

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y  CG +  A  +F  + ++ + +WN+M+ G+V  G    A+E+YREM    V  D  T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
             +L AC    DL                                            G +
Sbjct: 62  PVLLKACGIVEDLF------------------------------------------CGAE 79

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYG 362
           IH    K G     ++  SL+ +Y KC +++ A ++F  +  R DV  W+++I+ ++  G
Sbjct: 80  IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNG 139

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              EAL LFS M +A V  N  TF   L AC  S  +  G
Sbjct: 140 MCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG++  A  +F  +  R +F W+ M+ G+   G    AL+++  M+   V  ++ T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 386 FTNVLCACSHSGLVDEGRMF----FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           F  +L AC   G+V++  +F     + +   YG    V     +V +  +   ++ A + 
Sbjct: 61  FPVLLKAC---GIVED--LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKL 115

Query: 442 IEKMPIVPGASVWGALLGA 460
            ++M +      W +++ A
Sbjct: 116 FDRMYVRNDVVSWNSIISA 134


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 357/665 (53%), Gaps = 92/665 (13%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q K++H   +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 230 IVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 289

Query: 90  Y---------------------AREMFDQIPQPN----LYTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F  + + N    + TW  +I  YS      ++  
Sbjct: 290 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALN 349

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----------EDDL 174
           +F Q+++ S   PN  T   V+ A A L  F  G  IH   +K+            ++DL
Sbjct: 350 VFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 408

Query: 175 FISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
            + N+LI  Y+ C     A  +F  + + +++VV+W  MI G  Q G    A++L+ EM 
Sbjct: 409 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 468

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            E                       +G                  V P+ +T   +L AC
Sbjct: 469 SE----------------------PYG------------------VAPNAYTISCILMAC 488

Query: 293 AQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A L A+ IG QIHA + +  Q      ++   LI+MY+KCG++D A  VF ++  +    
Sbjct: 489 AHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS 548

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++M+ G+ M+G G EALD+F +M++A   P+ +TF  VL ACSH G+VD+G  +F+ M 
Sbjct: 549 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 608

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY   +D+L R G LD+A + ++ MP+ P A VW ALL AC++H NVELA
Sbjct: 609 ADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELA 668

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E+A + L+E+  EN G+  L+SNIYA  G+W +V+ +R  M+ SG+KK PGCS ++    
Sbjct: 669 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 728

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
              F  G+ SHPL  +IY+ L+ ++ R+K+ GYVP  +  L  V+EE+ +   L  HSE+
Sbjct: 729 TASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE-KNNLLVEHSEK 787

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+ G+CS
Sbjct: 788 LALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 847

Query: 651 CMDYW 655
           C  YW
Sbjct: 848 CGGYW 852



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 205/414 (49%), Gaps = 57/414 (13%)

Query: 87  SLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQL---VYNSPYFPNE- 139
           SLE A  +FD+I Q    ++ +WN+++ A+  S+    +  +F ++   V+  P   NE 
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP--TNER 224

Query: 140 ---FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
               +   ++ A   L      + +HG  I++    D+F+ N+LI  YA CG +  A  V
Sbjct: 225 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 284

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F M+  KDVVSWN+M++G+ Q G F+ A EL++ M  EN+  D VT  AV++  +++   
Sbjct: 285 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR--- 341

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 +EAL++F ++  S ++ P+  T +SVLSACA LGA   G++IHA   K     N
Sbjct: 342 ---GCSHEALNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLK-----N 392

Query: 317 CYLT---------------TSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFA 359
           C LT                +LIDMY+KC +   A  +F  +  + R+V  W+ MI G A
Sbjct: 393 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 452

Query: 360 MYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-------E 410
            YG   +AL LF  M  +   V PNA T + +L AC+H   +  G+     +        
Sbjct: 453 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 512

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             Y V        C+++M  + G +D A    + M      S W +++    +H
Sbjct: 513 SAYFVA------NCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMH 559



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 50/346 (14%)

Query: 76  LFTPCALGT--------FSSLEYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIF 126
             +P +LGT          + +YA  + +++ P P ++ WN LIR +        +  + 
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVS 105

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
            +++       + FT P V+KA   L  +R G A HG++  + FE ++FI N+L+  Y+ 
Sbjct: 106 CRMLRAGTRL-DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 164

Query: 187 CGDLAMAYCVFVMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           CG L  A  +F  I   G  DV+SWNS++S  V+      A++L+ +M +          
Sbjct: 165 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTL---------- 214

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                                   I HE     N   D  + V++L AC  L A+    +
Sbjct: 215 ------------------------IVHEKP--TNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +H    + G  L+ ++  +LID Y KCG ++ A++VF+ ++ +DV  W+ M+AG++  G 
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            + A +LF  M++  +  + VT+T V+   S  G   E    F QM
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 110/295 (37%), Gaps = 55/295 (18%)

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           +   ++  Y  CG    A  V   +     V WN +I   ++ G  + AI +   M    
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
            + D  T+  VL A                                          C +L
Sbjct: 113 TRLDHFTLPHVLKA------------------------------------------CGEL 130

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWS 352
            +   G   H  +   G + N ++  +L+ MY++CG+L++A  +F  +  R   DV  W+
Sbjct: 131 PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWN 190

Query: 353 TMIAGFAMYGCGREALDLFSRM------QEAKVKPNAVTFTNVLCACSHSGLVDEGR-MF 405
           ++++          ALDLFS+M      +    + + ++  N+L AC     V + + + 
Sbjct: 191 SIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVH 250

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            N +    G    V     ++D   + GL++ AV+    M      S W A++  
Sbjct: 251 GNAIRN--GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS-WNAMVAG 302


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/687 (33%), Positives = 384/687 (55%), Gaps = 68/687 (9%)

Query: 31  NNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSS 87
           N G     + + S+++ C  +  +++   IH  + + G+  D    + L +      F+ 
Sbjct: 209 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYC--KFNG 266

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L   R +FD++   +  +WNT+I  YS      +S  +F+++V  + + P+  T   +++
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQ 324

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A   L     G+ +H  +I S +E D   SN LI+ YA CG+L  +  VF  +  KD VS
Sbjct: 325 ACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS 384

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------- 260
           WNSMI+ ++Q G F++A++L++ M+ + VKPD VT V +LS   +  DL  G+       
Sbjct: 385 WNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLA 443

Query: 261 ---------WPNEALSIFHE-------LQLSKNVNP-DEFTFVSVLSACAQLGAMDIGVQ 303
                      N  + ++ +       L++ +N+   D  T+ +++++C      ++G++
Sbjct: 444 KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 503

Query: 304 IHAKMKKQGIKLN----------CYLTTS-------------------------LIDMYT 328
           + ++M+ +G+  +          C L  +                         LI+MY+
Sbjct: 504 MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYS 563

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG+L  + +VF  +K++DV  W+ +I+   MYG G++A+  F  M+ A + P+ V F  
Sbjct: 564 KCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVA 623

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           ++ ACSHSGLV+EG  +F++M+  Y + P ++HY C+VD+L R+ LLD+A +FI  MP+ 
Sbjct: 624 IIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLK 683

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P +S+WGALL AC++  + E+AE     ++EL P++ G  VL+SNIYA  GKWD V  +R
Sbjct: 684 PDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIR 743

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K ++  GLKK+PGCS +E+  +++ F  G       +E+   L  +   +   GY+ N  
Sbjct: 744 KSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQ 803

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            +L  + +ED +   L  HSERLAIA+GL++ +P  P++++KNLRVC DCHTV K ISK+
Sbjct: 804 FVLHDI-DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKI 862

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             RE+L+RD  RFH F+ G CSC DYW
Sbjct: 863 VQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 199/431 (46%), Gaps = 52/431 (12%)

Query: 43  SLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +   +  K IH ++L  G   D Y  + L        F+ L+ AR++F+++P
Sbjct: 120 SVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYC--RFNDLDKARKVFEEMP 177

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +WN+LI  Y+++    ++  I+ +   N    P+ +T   V++A   L     G 
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGD 236

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG++ K   + D+ ++N L+  Y     L     +F  +  +D VSWN+MI G+ Q G
Sbjct: 237 IIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 296

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
            +E++I+L+ EM +   KPD +T+ ++L AC    DLEFG++                  
Sbjct: 297 LYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY------------------ 337

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                   +H  M   G + +   +  LI+MY KCGNL  + EV
Sbjct: 338 ------------------------VHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 373

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +K +D   W++MI  +   G   EA+ LF +M +  VKP++VT+  +L   +  G +
Sbjct: 374 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDL 432

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
             G+     +  + G    +     +VDM  + G + ++++  E M        W  ++ 
Sbjct: 433 HLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIA 490

Query: 460 ACKIHENVELA 470
           +C   E+  L 
Sbjct: 491 SCVHSEDCNLG 501



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 169/391 (43%), Gaps = 51/391 (13%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  + +A A          +H ++I       +  S  LI  YA   D   ++ VF +  
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 202 -KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
              +V  WNS+I      G F                                       
Sbjct: 76  PSNNVYLWNSIIRALTHNGLF--------------------------------------- 96

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
             +EALS++ E Q  + + PD +TF SV++ACA L   ++   IH ++   G   + Y+ 
Sbjct: 97  --SEALSLYSETQRIR-LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIG 153

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            +LIDMY +  +LDKA +VF  +  RDV  W+++I+G+   G   EAL+++ R +   V 
Sbjct: 154 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P++ T ++VL AC   G V+EG +    +E + G+   V     ++ M  +   L +   
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKI-GIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
             +KM ++  A  W  ++     +  V L E +    +E+  +    L+ +++I    G 
Sbjct: 273 IFDKM-VLRDAVSWNTMICG---YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGH 328

Query: 501 WDNV---SELRKHMRVSGLKKEPGCSSIEVN 528
             ++     +  +M  SG + +   S+I +N
Sbjct: 329 LGDLEFGKYVHDYMITSGYECDTTASNILIN 359


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 327/568 (57%), Gaps = 47/568 (8%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++FD+    ++ +WNT++          ++     Q+V     F N +T+  V   A 
Sbjct: 211 ATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSN-YTYSMVFALAG 269

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM---IGKKDVVS 207
            L    +G+ +HG V+ +  E+D F+  SL+  Y  CG++  A  +F       +    +
Sbjct: 270 LLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFA 329

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W++M++G+VQ G  E+A+E +R M                                    
Sbjct: 330 WSTMVAGYVQNGREEEALEFFRRM------------------------------------ 353

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                 L + V   +F   SV SACA  G ++ G Q+H  ++K G + +  L ++++DMY
Sbjct: 354 ------LREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMY 407

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +K G+L+ A  +F + ++++V +W+TM+  +A +G GR AL++FSRM+  K+ PN +T  
Sbjct: 408 SKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLV 467

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSHSGLV +G  +FN M+  YG+VP  +HY CMVD+ GRAGLLD+A  FIE+  I
Sbjct: 468 AVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKI 527

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
              A VW  LL AC++H+++E A+ A   L++LE  + G+ VL+SN+YA   KW +  +L
Sbjct: 528 SHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKL 587

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M+   ++K+PG S I +   +H+F+A ++SHP   EIY+ L++++ RLK  GY    
Sbjct: 588 RSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRT 647

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             ++  +EEE  +E +L  HSE+LAIA+G+IS      +RI KNLRVC DCH   K I++
Sbjct: 648 DLVVHDIEEEQ-RETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITR 706

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
             +REI++RD YRFHHF+ G CSC D+W
Sbjct: 707 ATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVI 146
           L  A  +FD  P  +L  W ++I   +           F +++       PN F    V+
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           +  A L     G+ IHG +++S    D+ + N+++  YA CGD   A   F  + +KD  
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           SWN +I   +Q G    A +L+ E  + +V     T+V+ L        +  G    EAL
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWN-TIVSGL--------MRHGH-TTEAL 243

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
               ++ +   V    +T+  V +    L + D+G Q+H ++    ++ + ++  SL+DM
Sbjct: 244 GRLQQM-VRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDM 302

Query: 327 YTKCGNLDKALEVFHT----VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           Y KCG ++ AL +F       + R  F WSTM+AG+   G   EAL+ F RM    V   
Sbjct: 303 YCKCGEMESALSIFDRWSDFTEDRQ-FAWSTMVAGYVQNGREEEALEFFRRMLREGVPAG 361

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY------TCMVDMLGRAGLLD 436
               T+V  AC+++G+V++GR        V+G V  + H       + +VDM  ++G L+
Sbjct: 362 QFILTSVASACANAGMVEQGR-------QVHGFVEKLGHRFDAPLASAIVDMYSKSGSLE 414

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
           +A   I +       ++W  +L +   H    +A
Sbjct: 415 DACR-IFRSAQTKNVALWTTMLCSYASHGQGRMA 447



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 131/323 (40%), Gaps = 52/323 (16%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQ-- 97
           VF+L     +    +Q+H +++   L  D +    L    C  G    +E A  +FD+  
Sbjct: 264 VFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCG---EMESALSIFDRWS 320

Query: 98  -IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARLVQF 155
              +   + W+T++  Y  +    ++   F +++    P    +F    V  A A     
Sbjct: 321 DFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVP--AGQFILTSVASACANAGMV 378

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ +HG V K     D  ++++++  Y+  G L  A  +F     K+V  W +M+  +
Sbjct: 379 EQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSY 438

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
              G    A+E++  M+ E + P+E+T+VAVLSAC+                        
Sbjct: 439 ASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSH----------------------- 475

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             +  D + + +++                   ++ GI  N      ++D+Y + G LDK
Sbjct: 476 SGLVSDGYHYFNLMQ------------------EEYGIVPNTEHYNCMVDLYGRAGLLDK 517

Query: 336 ALEVFHTVK-SRDVFVWSTMIAG 357
           A       K S +  VW T+++ 
Sbjct: 518 AKNFIEENKISHEAVVWKTLLSA 540



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 18/263 (6%)

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM--EMENVKPDEVTM 243
           I   L  A+ VF     + + +W S+ISG  + G     +  + EM  E     P+   +
Sbjct: 70  IARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVL 129

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
             VL  CA   D+E GR         H   L   V PD     +VL   A+ G      +
Sbjct: 130 AGVLRCCAGLGDVESGR-------RIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARR 182

Query: 304 IHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
               M +K     N  +   L D     G+L  A ++F     RDV  W+T+++G   +G
Sbjct: 183 AFGAMAQKDATSWNIVIRACLQD-----GDLVGATQLFDESSLRDVSSWNTIVSGLMRHG 237

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
              EAL    +M  A V  +  T++ V          D GR    ++  V  V+      
Sbjct: 238 HTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRV--VVAVLEEDAFV 295

Query: 423 TC-MVDMLGRAGLLDEAVEFIEK 444
            C ++DM  + G ++ A+   ++
Sbjct: 296 GCSLMDMYCKCGEMESALSIFDR 318


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 359/618 (58%), Gaps = 16/618 (2%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + S+ K C     L   K+IH   ++ G   D    + L      G    +  AR +FD 
Sbjct: 80  LLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALID--MFGKCKFVNGARCVFDD 137

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   ++ +W ++   Y +     Q  ++F ++  N     N  T   ++ A A  +  ++
Sbjct: 138 MVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIR-ANSLTVSSILPACADYI--KL 194

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ +HG ++++  E ++++S++L++ YA    L  A  VF  +  +D+VSWN M++ +  
Sbjct: 195 GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFL 254

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
              +E+ + L+ +M  E +K ++ +  A +S C +    E       AL I  ++Q S  
Sbjct: 255 NKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHEL------ALGILCKMQDS-G 307

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P+  T VS L  C  L ++  G +IH  + +     +  +TT+L+ +Y KCG+L+ + 
Sbjct: 308 IKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSR 367

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF+T+  +DV  W+TMI   +M+G G E+L LF++M ++ V+PN+VTF  VL  CSHS 
Sbjct: 368 HVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQ 427

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           L DEG + FN M   + + P   HY+CMVD+L RAG L+EA +FI KMPI P A+ WGAL
Sbjct: 428 LADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGAL 487

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC++++NVEL   A S L E+EP+N G  VLLSNI     KW   SE+RK MR  GL 
Sbjct: 488 LGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLA 547

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K PG S ++V  +++ F+ G+ S+     IY  LDEI  +++  GY PN   +LQ V++E
Sbjct: 548 KTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQE 607

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             +E+ L  HSERLA+A+G+++      +R+ KNLR+CGDCH   KLI+K+   +I++RD
Sbjct: 608 Q-REETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRD 666

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHFR G C+C D+W
Sbjct: 667 SLRFHHFRDGYCTCNDFW 684



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 45/226 (19%)

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           GDL  A  +F  I + D+ +W  +ISG  Q GF                           
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGF--------------------------- 57

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
                         P +A+ I+  L LS+NV PD+F  +SV  ACA  G + +  +IH  
Sbjct: 58  --------------PKKAIDIYSTL-LSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDD 102

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
             + G   +  L  +LIDM+ KC  ++ A  VF  +  +DV  W++M   +   G  R+ 
Sbjct: 103 AIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQG 162

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHS---GLVDEGRMFFNQME 410
           + LF  M    ++ N++T +++L AC+     G    G +  N+ME
Sbjct: 163 ILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILRNEME 208


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 357/665 (53%), Gaps = 92/665 (13%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q K++H   +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 123 IVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 182

Query: 90  Y---------------------AREMFDQIPQPN----LYTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F  + + N    + TW  +I  YS      ++  
Sbjct: 183 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALN 242

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----------EDDL 174
           +F Q+++ S   PN  T   V+ A A L  F  G  IH   +K+            ++DL
Sbjct: 243 VFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 301

Query: 175 FISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
            + N+LI  Y+ C     A  +F  + + +++VV+W  MI G  Q G    A++L+ EM 
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
            E                       +G                  V P+ +T   +L AC
Sbjct: 362 SE----------------------PYG------------------VAPNAYTISCILMAC 381

Query: 293 AQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A L A+ IG QIHA + +  Q      ++   LI+MY+KCG++D A  VF ++  +    
Sbjct: 382 AHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS 441

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++M+ G+ M+G G EALD+F +M++A   P+ +TF  VL ACSH G+VD+G  +F+ M 
Sbjct: 442 WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMS 501

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P  +HY   +D+L R G LD+A + ++ MP+ P A VW ALL AC++H NVELA
Sbjct: 502 ADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELA 561

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E+A + L+E+  EN G+  L+SNIYA  G+W +V+ +R  M+ SG+KK PGCS ++    
Sbjct: 562 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 621

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
              F  G+ SHPL  +IY+ L+ ++ R+K+ GYVP  +  L  V+EE+ +   L  HSE+
Sbjct: 622 TASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEE-KNNLLVEHSEK 680

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+ G+CS
Sbjct: 681 LALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCS 740

Query: 651 CMDYW 655
           C  YW
Sbjct: 741 CGGYW 745



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 205/414 (49%), Gaps = 57/414 (13%)

Query: 87  SLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQL---VYNSPYFPNE- 139
           SLE A  +FD+I Q    ++ +WN+++ A+  S+    +  +F ++   V+  P   NE 
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP--TNER 117

Query: 140 ---FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
               +   ++ A   L      + +HG  I++    D+F+ N+LI  YA CG +  A  V
Sbjct: 118 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 177

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F M+  KDVVSWN+M++G+ Q G F+ A EL++ M  EN+  D VT  AV++  +++   
Sbjct: 178 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR--- 234

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                 +EAL++F ++  S ++ P+  T +SVLSACA LGA   G++IHA   K     N
Sbjct: 235 ---GCSHEALNVFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLK-----N 285

Query: 317 CYLT---------------TSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFA 359
           C LT                +LIDMY+KC +   A  +F  +  + R+V  W+ MI G A
Sbjct: 286 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 345

Query: 360 MYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-------E 410
            YG   +AL LF  M  +   V PNA T + +L AC+H   +  G+     +        
Sbjct: 346 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 405

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             Y V        C+++M  + G +D A    + M      S W +++    +H
Sbjct: 406 SAYFVA------NCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMH 452



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 39/275 (14%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FT P V+KA   L  +R G A HG++  + FE ++FI N+L+  Y+ CG L  A  +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 198 VMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
             I   G  DV+SWNS++S  V+      A++L+ +M +                     
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTL--------------------- 107

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                        I HE     N   D  + V++L AC  L A+    ++H    + G  
Sbjct: 108 -------------IVHEKP--TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF 152

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
           L+ ++  +LID Y KCG ++ A++VF+ ++ +DV  W+ M+AG++  G  + A +LF  M
Sbjct: 153 LDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNM 212

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           ++  +  + VT+T V+   S  G   E    F QM
Sbjct: 213 RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/670 (34%), Positives = 363/670 (54%), Gaps = 100/670 (14%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q K+IH+  +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 262 IVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVME 321

Query: 90  Y---------------------AREMFDQIPQPNL----YTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F  + + N+     TW+ +I  Y+      ++  
Sbjct: 322 FKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALD 381

Query: 125 IFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF------------E 171
            F Q++ Y S   PN  T   ++ A A L     G   H   +K                
Sbjct: 382 TFQQMILYGSE--PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDG 439

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--VVSWNSMISGFVQGGFFEKAIELYR 229
           +DL + N+LI  Y+ C     A  +F  I +++  VV+W  MI G+ Q G          
Sbjct: 440 EDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGD--------- 490

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK--NVNPDEFTFVS 287
                                            N+AL +F E+ +SK   V P+ +T   
Sbjct: 491 --------------------------------SNDALKLFSEM-ISKPYAVAPNAYTISC 517

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNC--YLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           +L ACA L ++ +G QIHA + +     +   ++   LIDMY+KCG++D A  VF ++  
Sbjct: 518 ILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPK 577

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           R+   W++M++G+ M+G G+EALD+F +MQ+A   P+ ++F  +L ACSHSG+VD+G  +
Sbjct: 578 RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDY 637

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ M   YGV+   +HY C++D+L R+G LD+A + I++MP+ P A++W ALL AC++H 
Sbjct: 638 FDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHS 697

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           NVELAEYA + L+ ++ EN G+  L+SNIYA   +W +V+ +R+ M+ SG+KK PGCS +
Sbjct: 698 NVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWV 757

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           +       F  G+ SHPL  EIYS L+ ++ R+K  GYVP  +  L  V++E+ +   L 
Sbjct: 758 QGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEE-KNNLLT 816

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSE+LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+
Sbjct: 817 EHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFK 876

Query: 646 GGNCSCMDYW 655
            G+CSC  YW
Sbjct: 877 NGSCSCGGYW 886



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 199/431 (46%), Gaps = 61/431 (14%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYS----------ASKLFTPCA 81
            G    P    SL+K+C+++  ++QIH +++  GL   P S          +    +P +
Sbjct: 25  TGRDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKS 84

Query: 82  LGTFSSLEY--------AREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
           LGT     Y        A  + +++ P P ++ WN L+RA+       ++  +  +++  
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVW-WNLLVRAHIEEGRLDRAIGVSCRML-R 142

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
           +   P+ FT P+ +KA   L  +R G A HG++  + FE ++F+ N+L+  Y+  G L  
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLED 202

Query: 193 AYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           A  VF  I +K   DV+SWNS+++  V+G     A++L+ EM                  
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMT----------------- 245

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
                            +I HE   + N   D  + V++L ACA L A+    +IH+   
Sbjct: 246 -----------------TIVHEK--ATNERSDIISIVNILPACASLKALPQTKEIHSYAI 286

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           + G   + ++  +LID Y KCG++  A+ VF+ ++ +DV  W+ M+ G+   G    A +
Sbjct: 287 RNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFE 346

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF  M++  +  + +T++ V+   +  G   E    F QM  +YG  P       ++   
Sbjct: 347 LFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM-ILYGSEPNSVTIISLLSAC 405

Query: 430 GRAGLLDEAVE 440
              G L + +E
Sbjct: 406 ASLGALSQGME 416


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/485 (44%), Positives = 306/485 (63%), Gaps = 13/485 (2%)

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ-GGFFEKAIELY-REM 231
           L IS++++  +A+         +F  I    +  +N++IS           A  LY R +
Sbjct: 48  LLISSTIVFTHALS--------IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVL 99

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRW-PNEALSIFHELQLSKNVNPDEFTFVSVLS 290
               +KP+  T  ++  AC  +  L    +     L++F E+Q S  +  +E T V+++S
Sbjct: 100 THTTLKPNGFTFPSLFKACGSQPWLRHDIFLIKSVLTLFIEMQKSL-IKANEVTLVALIS 158

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA+LGA+  G   H  + K  +KLN ++ T+LIDMY+KCG LD A ++F  +  RD   
Sbjct: 159 ACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLC 218

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           ++ MI GFA++G G +ALDLF +M    + P+ VT    +C+CSH GLV+EG   F  M+
Sbjct: 219 YNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMK 278

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            VYGV P ++HY C+VD+LGRAG L EA E +  MP+ P A +W +LLGA ++H N+E+ 
Sbjct: 279 EVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIG 338

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E    HL++LEPE  G  VLLSN+YA   +WD+V  +RK M+  G+ K PG S +EV G 
Sbjct: 339 EVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGA 398

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+FL G+ +HP  KEIY KL+E+  RL  +G+ P    +L  +EEE+ +E AL+ HSER
Sbjct: 399 MHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEE-KEDALSYHSER 457

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAIA+ LI+     PIRI+KNLRVCGDCHT +KLISK+Y REI++RDR RFHHF+ G CS
Sbjct: 458 LAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACS 517

Query: 651 CMDYW 655
           C DYW
Sbjct: 518 CSDYW 522



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 56/282 (19%)

Query: 21  RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC 80
           R PNP++           HP   L+++CK +  LKQ+H  M+ TGL F  Y  S++    
Sbjct: 2   RGPNPSS----------NHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLIS 51

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ-SFMIFLQLVYNSPYFPNE 139
           +   F+   +A  +F+ IP P ++ +NTLI + ++       +F ++ +++ ++   PN 
Sbjct: 52  STIVFT---HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNG 108

Query: 140 FTFP----------------FVIK--------------------------AAARLVQFRV 157
           FTFP                F+IK                          A A L     
Sbjct: 109 FTFPSLFKACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQ 168

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G   H  V+K + + + F+  +LI  Y+ CG L +A  +F  +  +D + +N+MI GF  
Sbjct: 169 GAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAI 228

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
            G+  +A++L+++M +E + PD+VT+V  + +C+    +E G
Sbjct: 229 HGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG 270


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/669 (35%), Positives = 364/669 (54%), Gaps = 98/669 (14%)

Query: 41  VFSLIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPC-----ALGTFSSLE 89
           + +++  C ++K   Q+K+IH+  +R G F D +  + L   +  C     A+  F+ +E
Sbjct: 262 IVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME 321

Query: 90  Y---------------------AREMFDQIPQPNL----YTWNTLIRAYSSSAEPIQSFM 124
           +                     A E+F+ + + N+     TW+ +I  Y+      ++  
Sbjct: 322 FKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALD 381

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF------------ED 172
            F Q++ +    PN  T   ++ A A L     G  IH   +K                +
Sbjct: 382 AFQQMILDGSE-PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--VVSWNSMISGFVQGGFFEKAIELYRE 230
           DL + N+LI  Y+ C     A  +F  I +++  VV+W  MI G+ Q G           
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGD---------- 490

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK--NVNPDEFTFVSV 288
                                           N+AL IF E+ +SK   V P+ +T   +
Sbjct: 491 -------------------------------SNDALKIFSEM-ISKPYAVAPNAYTISCI 518

Query: 289 LSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTS-LIDMYTKCGNLDKALEVFHTVKSR 346
           L ACA L A+ +G QIHA + +    + + Y   + LIDMY+KCG++D A  VF ++  R
Sbjct: 519 LMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR 578

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           +   W++M++G+ M+G G+EALD+F +MQ+A   P+ ++F  +L ACSHSG+VD+G  +F
Sbjct: 579 NEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYF 638

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
           + M   Y VV   +HY C++D+L R G LD+A + I++MP+ P A +W ALL AC++H N
Sbjct: 639 DIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSN 698

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           VELAEYA + L+ ++ EN G+  L+SNIYA   +W +V+ +R+ M+ SG+KK PGCS ++
Sbjct: 699 VELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
                  F  G+ SHPL  EIYS L+ ++ R+K  GYVP  +  L  V++E+ +   L+ 
Sbjct: 759 GKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEE-KNNLLSE 817

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LA+AYGL++  P  PIRI KNLRVCGDCH+    ISK+ + EI++RD  RFHHF+ 
Sbjct: 818 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKN 877

Query: 647 GNCSCMDYW 655
           G+CSC  YW
Sbjct: 878 GSCSCGGYW 886



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 199/403 (49%), Gaps = 47/403 (11%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF----------FDPYSASKLFTPCAL 82
           G    P    SL+K+C+++  ++QIH +++  GL             P  +    +P +L
Sbjct: 26  GRDVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSL 85

Query: 83  GTFSSLEY--------AREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
           GT     Y        A  + +++ P P ++ WN L+R +       ++  +  +++  +
Sbjct: 86  GTGVVASYLACGATKDALSVLERVTPSPAVW-WNLLVREHIKEGHLDRAIGVSCRML-RA 143

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              P+ FT P+ +KA   L  +  G+A+HG++  + FE ++F+ N+L+  Y+ CG L  A
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 194 YCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEM------ENVKPDEVTMV 244
             VF  I +K   DV+SWNS+++  V+G     A+EL+ EM M       N + D +++V
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
            +L ACA  + L         +   H   +      D F   +++   A+ G+M+  V++
Sbjct: 264 NILPACASLKAL-------PQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKV 316

Query: 305 HAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFA 359
              M+ K  +  N  +T      YT+ GN   A E+F  ++      DV  WS +IAG+A
Sbjct: 317 FNVMEFKDVVSWNAMVTG-----YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYA 371

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
             GC +EALD F +M     +PN+VT  ++L AC+  G + +G
Sbjct: 372 QRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/516 (40%), Positives = 321/516 (62%), Gaps = 17/516 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C NI +LK+IH  +++  L    +  +K+   C     +  EYA  +F ++  PN 
Sbjct: 20  ILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVC--NHHAETEYANLLFKRVADPNA 77

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNS----PYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + +N +IRAY  +   + +  ++ Q++ +S    P FP++FTFPFV+K+ A L+ + +G+
Sbjct: 78  FLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG V K   + +  + NSL+  Y  C  L  A+ VF  + ++D VSWN++ISG V+ G
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLG 197

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A  ++ EM+ + +     +  A++S  A+      G +  +AL  F  +Q+   + 
Sbjct: 198 QMRRARAIFEEMQDKTI----FSWTAIVSGYAR-----IGCYA-DALEFFRRMQMV-GIE 246

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PDE + VSVL ACAQLGA+++G  IH    K G   N  +  +LI+MY KCG++D+   +
Sbjct: 247 PDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRL 306

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  RDV  WSTMI G A +G   EA++LF  MQ+AK++PN +TF  +L AC+H+GL+
Sbjct: 307 FDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLL 366

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG  +F  M+  Y + PGV+HY C+V++LG +G LD+A+E I+KMP+ P +++WG+LL 
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLS 426

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +C+ H N+E+A  A  HLLELEP + G  VLLSN+YA  GKWD VS +RK MR   +KK 
Sbjct: 427 SCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKT 486

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           PGCSSIEV+  + +F +G+ S P  K IY  L  +V
Sbjct: 487 PGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLV 522


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 339/571 (59%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A   F+Q+ + ++ TWN++I  ++     +++  IF +++ +S   P+ FT   V+ 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLS 287

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
           A A L +  +G+ IH  ++ + F+    + N+LI  Y+ CG +  A  +    G KD  +
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
             + +++ G+++ G   +A  ++  ++  +V    V   A++     ++   +G    EA
Sbjct: 348 EGFTALLDGYIKLGDMNQAKNIFVSLKDRDV----VAWTAMI--VGYEQHGSYG----EA 397

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           +++F  + +     P+ +T  ++LS  + L ++  G QIH    K G   +  ++ +LI 
Sbjct: 398 INLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALIT 456

Query: 326 MYTKCGNLDKALEVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY K GN+  A   F  ++  RD   W++MI   A +G   EAL+LF  M    ++P+ +
Sbjct: 457 MYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  V  AC+H+GLV++GR +F+ M+ V  ++P + HY CMVD+ GRAGLL EA EFIEK
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEK 576

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MPI P    WG+LL AC++H+N++L + A   LL LEPEN GA   L+N+Y+  GKW+  
Sbjct: 577 MPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA 636

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +++RK M+   +KKE G S IEV  ++H F   + +HP   EIY  + +I   +K  GYV
Sbjct: 637 AKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYV 696

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +L  +EEE V+EQ L  HSE+LAIA+GLIS      +RI+KNLRVC DCHT  K 
Sbjct: 697 PDTASVLHDLEEE-VKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKF 755

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISKL  REI++RD  RFHHF+ G CSC DYW
Sbjct: 756 ISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/510 (24%), Positives = 219/510 (42%), Gaps = 93/510 (18%)

Query: 38  PHPVFSLIKQCKNIKQ-----------LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS 86
           P  + +L++ C N+ Q            + +H +++++GL F  Y  + L     +  +S
Sbjct: 6   PLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNL-----MNVYS 60

Query: 87  SLEYA---REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-------------- 129
              YA   R++FD++P    ++WNT++ AYS   +   +   F QL              
Sbjct: 61  KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120

Query: 130 ----------------VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                           +      P +FT   V+ + A       G+ +H  ++K     +
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + +SNSL++ YA CGD  MA  VF  +  +D+ SWN+MI+  +Q G  + A+  + +M  
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM-- 238

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
              + D VT  +++S   ++       +   AL IF ++     ++PD FT  SVLSACA
Sbjct: 239 --AERDIVTWNSMISGFNQR------GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACA 290

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC----------------------- 330
            L  + IG QIH+ +   G  ++  +  +LI MY++C                       
Sbjct: 291 NLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGF 350

Query: 331 ----------GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
                     G++++A  +F ++K RDV  W+ MI G+  +G   EA++LF  M     +
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN+ T   +L   S    +  G+          G +  V     ++ M  +AG +  A  
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGSAVK-SGEIYSVSVSNALITMYAKAGNITSASR 469

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELA 470
             + +        W +++ A   H + E A
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEA 499


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 335/572 (58%), Gaps = 17/572 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ AR+  D + +  +  WN +I  Y      +++  +F ++ Y      +EFT+  V+ 
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKM-YLLGIQWDEFTYTSVLS 299

Query: 148 AAARLVQFRVGQAIHGMVIKS----SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           A A    F  G+ +H  ++++    S +  L ++N+L   Y  CG +  A  VF  +  K
Sbjct: 300 ACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK 359

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D+VSWN+++SG+V  G  ++A   + EM   N+    +T   ++S  A+     FG    
Sbjct: 360 DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL----LTWTVMISGLAQN---GFGE--- 409

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           E+L +F+ ++ S+   P ++ F   + ACA L A+  G Q+HA++ + G   +     +L
Sbjct: 410 ESLKLFNRMK-SEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I MY KCG ++ A  +F T+   D   W+ MIA    +G G +AL+LF  M +  + P+ 
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDR 528

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +TF  VL  CSH+GLV+EG  +F  M  +YG+ PG  HY  M+D+L RAG   EA + IE
Sbjct: 529 ITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIE 588

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            MP+ PG  +W ALL  C+IH N++L   A   L EL P++ G  VLLSN+YA  G+WD+
Sbjct: 589 TMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDD 648

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V+++RK MR  G+KKEPGCS IEV  ++H FL  +  HP  + +Y+ L+E+  +++  GY
Sbjct: 649 VAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGY 708

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
           +P+   +L  +E E  +E  L+ HSE+LA+ +GL+ +     +R+ KNLR+CGDCH   K
Sbjct: 709 IPDTKFVLHDMESEQ-KEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFK 767

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            +SK+  REI++RD  RFHHF+ G CSC +YW
Sbjct: 768 FMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 180/422 (42%), Gaps = 63/422 (14%)

Query: 91  AREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           ARE+F   P    +   +N +I  YS + +   +  +F  L+ N  + P+ FTF  V+ A
Sbjct: 100 AREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG-FRPDNFTFTSVLGA 158

Query: 149 AARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC-------------------- 187
            A +V+  +  Q IH  V+KS       + N+L+  +  C                    
Sbjct: 159 LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFD 218

Query: 188 --------------------GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
                               G+L  A      + +K VV+WN+MISG+V  GFF +A+E+
Sbjct: 219 EMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEM 278

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           +R+M +  ++ DE T  +VLSACA       G+         H   L     P     +S
Sbjct: 279 FRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ-------VHAYILRTEPRPSLDFSLS 331

Query: 288 VLSACAQL----GAMDIGVQIHAKMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           V +A A L    G +D   Q+  +M  K  +  N  L+      Y   G +D+A   F  
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSG-----YVNAGRIDEAKSFFEE 386

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +  R++  W+ MI+G A  G G E+L LF+RM+    +P    F   + AC+    +  G
Sbjct: 387 MPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHG 446

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           R    Q+  + G    +     ++ M  + G+++ A      MP +   S W A++ A  
Sbjct: 447 RQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS-WNAMIAALG 504

Query: 463 IH 464
            H
Sbjct: 505 QH 506



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 167/405 (41%), Gaps = 49/405 (12%)

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI------------ 200
           + + + + +H  +I S F+   +I N LI  Y    DL  A+ +F  I            
Sbjct: 29  MSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLI 88

Query: 201 ---------------------GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
                                G +D V +N+MI+G+        AIEL+R++     +PD
Sbjct: 89  AAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPD 148

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--VNPDEFTFVSVLSACAQLGA 297
             T  +VL A A   + E      +   I   +  S +  V       +SV   CA    
Sbjct: 149 NFTFTSVLGALALIVEDE-----KQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPL 203

Query: 298 MDIGVQIHA--KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
           +     + A  K+  +  + +    T++I  Y + G LD A +    +  + V  W+ MI
Sbjct: 204 VSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMI 263

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEPV 412
           +G+  +G   EAL++F +M    ++ +  T+T+VL AC+++G    G+    +  + EP 
Sbjct: 264 SGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPR 323

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
             +   +     +  +  + G +DEA +   +MP+    S W A+L     + N    + 
Sbjct: 324 PSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS-WNAILSG---YVNAGRIDE 379

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           A S   E+   N     ++ +  A+ G  +   +L   M+  G +
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 35/157 (22%)

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMD--IGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           +++ + NV      + + L  C     M   I   +HA M   G K   Y+   LID+Y 
Sbjct: 2   DMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYC 61

Query: 329 KCGNLDKALEVFHTVKS---------------------------------RDVFVWSTMI 355
           K  +L  A  +F  ++                                  RD   ++ MI
Sbjct: 62  KSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMI 121

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
            G++    G  A++LF  +     +P+  TFT+VL A
Sbjct: 122 TGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGA 158


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/484 (44%), Positives = 307/484 (63%), Gaps = 16/484 (3%)

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           ++NSL+  Y   G L  A  V    G   DVVSWN+M+SG+ +GG    A E++  M   
Sbjct: 115 VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
           N+    V+  A++ AC   R  EFG    EAL +F  + + +   PD    VSVL ACA 
Sbjct: 175 NL----VSWSAMVDACV--RAGEFG----EALWVFDRM-MREEFRPDVVVLVSVLKACAH 223

Query: 295 LGAMDIGVQIHAKMKKQ---GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           LGA++ G  +H  ++     G + N  L T+L+DMY KCG ++ A +VF  V  RDV +W
Sbjct: 224 LGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLW 283

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI G AM G G  AL+LF RM +    PN  TF  VLCAC+H+G VDEG+  F  M+ 
Sbjct: 284 NAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD 343

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            YG+ P  +HY C+ D+LGRAG ++EA   +  MP+ P AS WGAL+ +C++H ++ + E
Sbjct: 344 -YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGE 402

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
                L+ELEP + G  V+L N+YA  G+W+    +R+ M   G KKE G S IE+NG +
Sbjct: 403 RVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLV 462

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           H+F++G++ HPL ++IY+ L++I  RL+  GYV + S ++  +++E+ +  AL+ HSERL
Sbjct: 463 HEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERL 522

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+A+G++++    PIRIVKNLRVC DCH  +KL+SKLY REI++RDR+RFH FR G CSC
Sbjct: 523 ALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSC 582

Query: 652 MDYW 655
            DYW
Sbjct: 583 NDYW 586



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAR 92
           G   HP    SL+K   ++  L +    +   G   D  S + + +    G    L  AR
Sbjct: 108 GALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVS--GYGKGGDLGAAR 165

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           E+F ++P+ NL +W+ ++ A   + E  ++  +F +++    + P+      V+KA A L
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM-REEFRPDVVVLVSVLKACAHL 224

Query: 153 VQFRVGQAIHGMVIKSSF---EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
                G+ +H  +   SF     +L +  +L+  Y  CG +  A+ VF  + ++DVV WN
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           +MI G    G+ E+A+EL+R M  +   P+E T +AVL AC     ++ G+
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGK 335


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 348/618 (56%), Gaps = 52/618 (8%)

Query: 44  LIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           ++K C ++   +  +++H  ++  GL  D Y  + + +      F  +E AR +FD++  
Sbjct: 130 VLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILS--MYFKFGDVEAARVVFDRMLV 187

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            +L +WNT++  +  + E   +F +F  +  +  +  +  T   ++ A   ++  +VG+ 
Sbjct: 188 RDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDG-FVGDRTTLLALLSACGDVMDLKVGKE 246

Query: 161 IHGMVIKSSFEDDL---FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           IHG V+++     +   F+ NS+I  Y  C  ++ A  +F  +  KDVVSWNS+ISG+ +
Sbjct: 247 IHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEK 306

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G   +A+EL+  M         V + AV                               
Sbjct: 307 CGDAFQALELFGRM---------VVVGAV------------------------------- 326

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             PDE T +SVL+AC Q+ A+ +G  + + + K+G  +N  + T+LI MY  CG+L  A 
Sbjct: 327 --PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCAC 384

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +  +++   + M+ GF ++G GREA+ +F  M    V P+   FT VL ACSHSG
Sbjct: 385 RVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSG 444

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LVDEG+  F +M   Y V P   HY+C+VD+LGRAG LDEA   IE M + P   VW AL
Sbjct: 445 LVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTAL 504

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L AC++H NV+LA  +   L EL P+     V LSNIYA   +W++V  +R  +    L+
Sbjct: 505 LSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLR 564

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K P  S +E+N  +H+F  G++SH    +IY+KL ++  +LK  GY P+ S +L  VEEE
Sbjct: 565 KPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEE 624

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
            ++E+ L  HSERLA+A+ LI+  P   IRI KNLRVCGDCHTV K+ISKL NREI++RD
Sbjct: 625 -IKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRD 683

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHFR G CSC  YW
Sbjct: 684 ICRFHHFRDGLCSCGGYW 701



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 207/431 (48%), Gaps = 58/431 (13%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCA 81
           P P++ +  +  Q     +   +   K++ Q  Q+H  +   G L  + Y A+KL    A
Sbjct: 12  PKPSSTSTFDSLQ--CGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYA 69

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           +     + YA+ +FDQI   N + WN++IR Y+ +  P ++  ++L++++     P+ FT
Sbjct: 70  V--CGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQK-PDNFT 126

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +PFV+KA   L+   +G+ +H +V+    E+D+++ NS++  Y   GD+  A  VF  + 
Sbjct: 127 YPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRML 186

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +D+ SWN+M+SGFV+ G    A E++ +M  +    D  T++A+LSAC    DL+ G+ 
Sbjct: 187 VRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGK- 245

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK---LNCY 318
                                                    +IH  + + G      N +
Sbjct: 246 -----------------------------------------EIHGYVVRNGESGRVCNGF 264

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L  S+IDMY  C ++  A ++F  ++ +DV  W+++I+G+   G   +AL+LF RM    
Sbjct: 265 LMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVG 324

Query: 379 VKPNAVTFTNVLCACSHSGLVDEG---RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
             P+ VT  +VL AC+    +  G   + +  +   V  VV G    T ++ M    G L
Sbjct: 325 AVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG----TALIGMYANCGSL 380

Query: 436 DEAVEFIEKMP 446
             A    ++MP
Sbjct: 381 VCACRVFDEMP 391


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/596 (38%), Positives = 339/596 (56%), Gaps = 45/596 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A  +F Q+P+ N  T+  L+  +  +    ++  +F           +E     V+ 
Sbjct: 128 LADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLF-----------DEMPDKDVVA 176

Query: 148 AAARLVQF-RVGQAIHGMVIKSSFEDDLFIS-NSLIHFYAICGDLAMAYCVFVMIGKKDV 205
             A L  + + G+      +         +S  ++I  YA  G + +A  +F ++  ++ 
Sbjct: 177 RTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNE 236

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA------VLSA-------CAK 252
           VSW +M+ G++Q G  E A +L+  M    V      MV       V +A       CA+
Sbjct: 237 VSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCAR 296

Query: 253 KRDLEFGRWPN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
               + G W              EALS F E+ L + + P+  +F+S+L+ CA L   D 
Sbjct: 297 ----DDGTWSAMIKVYEQNEFLMEALSTFREM-LCRGIRPNYTSFISILTVCAALATADY 351

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G ++HA M +     + +  ++LI MY KCGNLDKA  VF+  + +DV +W++MI G+A 
Sbjct: 352 GRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQ 411

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
           +G G EAL +F  ++ A++ P+ +T+  VL ACS++G V EGR  FN M     +  G  
Sbjct: 412 HGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAA 471

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY+CMVD+LGRAGL+DEA++ I  MP+ P A +WGAL+GAC++H+N E+AE A   LLEL
Sbjct: 472 HYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLEL 531

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES- 539
           EP + G  VLLS+IY  TG+W++ S++RK +    L K PGCS IE N  +H F +G+  
Sbjct: 532 EPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVL 591

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SHP    I + L+E+   L   GY  + S +L  V+EE  + Q+L  HSER A+AYGL+ 
Sbjct: 592 SHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQ-KAQSLRYHSERQAVAYGLLK 650

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           V    PIR++KNLRVCGDCH+  KLI+K+ +REI+LRD  RFHHF+ G CSC DYW
Sbjct: 651 VPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 132/282 (46%), Gaps = 43/282 (15%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
             G    ++ A+ MF+++   +  TW+ +I+ Y  +   +++   F +++      PN  
Sbjct: 276 GFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRG-IRPNYT 334

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           +F  ++   A L     G+ +H  +++ SF+ D+F  ++LI  Y  CG+L  A  VF M 
Sbjct: 335 SFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMF 394

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             KDVV WNSMI+G+ Q G  E+A+ ++ ++ +  + PD +T + VL+AC+    ++ GR
Sbjct: 395 EPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGR 454

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                  IF+ + ++ +                                   I+L     
Sbjct: 455 ------EIFNSMGMNSS-----------------------------------IRLGAAHY 473

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMY 361
           + ++D+  + G +D+AL++ + +    D  +W  ++    M+
Sbjct: 474 SCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMH 515



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 23/205 (11%)

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVS+ S++ G+V+ G    AI L+ +M   N     VT   +L        L+ GR  NE
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFHQMPERN----HVTYTVLLGGF-----LDAGR-VNE 161

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           A  +F E+      + D     ++LS   Q G +     +  +M K+    N    T++I
Sbjct: 162 ARKLFDEMP-----DKDVVARTAMLSGYCQAGRITEARALFDEMPKR----NVVSWTAMI 212

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
             Y + G +  A ++F  +  R+   W+ M+ G+   G   +A DLF+ M +  V     
Sbjct: 213 SGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPV----A 268

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQM 409
               ++      G+VD  +  F +M
Sbjct: 269 ACNAMMVGFGQHGMVDAAKAMFERM 293



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 138/340 (40%), Gaps = 49/340 (14%)

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           + SS    +  +N+ I +    G++  A   F  +  +   S+N++I+G+ +    + A+
Sbjct: 9   LPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAAL 68

Query: 226 ELYREMEMENVK----------------PDEVTMVA-------VLSACAKKRDLEFGRWP 262
            L+  M   ++                 PD    +A       V+S  +  R        
Sbjct: 69  GLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLL 128

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            +A+ +FH++    +V     T+  +L      G ++   ++  +M  + +       T+
Sbjct: 129 ADAIRLFHQMPERNHV-----TYTVLLGGFLDAGRVNEARKLFDEMPDKDV----VARTA 179

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           ++  Y + G + +A  +F  +  R+V  W+ MI+G+A  G    A  LF  M +     N
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----N 235

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQM--EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            V++T +L     +G V++    FN M   PV            M+   G+ G++D A  
Sbjct: 236 EVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAAC-------NAMMVGFGQHGMVDAAKA 288

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
             E+M        W A++   K++E  E    A S   E+
Sbjct: 289 MFERM-CARDDGTWSAMI---KVYEQNEFLMEALSTFREM 324



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL-DLFSRMQEAKV 379
            +LI  Y +    D AL +FH + SRD+  ++ +IAG ++    R  L D  + +    +
Sbjct: 52  NALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLR---RHTLPDAAAALASIPL 108

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH--YTCMVDMLGRAGLLDE 437
            P+ V+FT++L      GL+ +    F+QM       P   H  YT ++     AG ++E
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFHQM-------PERNHVTYTVLLGGFLDAGRVNE 161

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A +  ++MP     +    L G C+     E    A +   E+   N  +   + + YA+
Sbjct: 162 ARKLFDEMPDKDVVARTAMLSGYCQAGRITE----ARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 498 TGK 500
            GK
Sbjct: 218 NGK 220


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 331/586 (56%), Gaps = 55/586 (9%)

Query: 82  LGTF-SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL-VYNSPYFPNE 139
           +G+F S+L   + M ++  + ++ TW+ +I  Y+      ++  +F Q+ +Y     PN 
Sbjct: 313 IGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLE--PNV 370

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSF-------EDDLFISNSLIHFYAICGDLAM 192
            T   ++   A +     G+  H  VIK+         EDDL + N LI  YA C    +
Sbjct: 371 VTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRV 430

Query: 193 AYCVFVMIGKKD--VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
           A  +F  I  KD  VV+W  MI G+ Q G    A++L+ +                    
Sbjct: 431 ARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQ-------------------- 470

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMK 309
                            IF +     ++ P+ FT    L ACA+LG + +G Q+HA  ++
Sbjct: 471 -----------------IFKQ---KTSLKPNAFTLSCALMACARLGELRLGRQLHAYALR 510

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
            +      Y+   LIDMY+K G++D A  VF  +K R+V  W++++ G+ M+G G EAL 
Sbjct: 511 NENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALH 570

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF +MQ+     + +TF  VL ACSHSG+VD+G ++F+ M   +G+ PG +HY CMVD+L
Sbjct: 571 LFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLL 630

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
           GRAG L+EA+E I+ M + P A VW ALL A +IH N+EL EYA S L EL  EN G+  
Sbjct: 631 GRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYT 690

Query: 490 LLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYS 549
           LLSN+YA   +W +V+ +R  M+ +G++K PGCS I+       F  G+ SHP  ++IY+
Sbjct: 691 LLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYN 750

Query: 550 KLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIV 609
            L +++ R+K  GYVP  S  L  V++E+ +   L  HSE+LA+AYG+++  P QPIRI 
Sbjct: 751 LLLDLIKRIKDMGYVPQTSFALHDVDDEE-KGDLLFEHSEKLAVAYGILTTAPGQPIRIH 809

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KNLR+CGDCH+    IS + + EI+LRD  RFHHF+ G+CSC  YW
Sbjct: 810 KNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 187/376 (49%), Gaps = 29/376 (7%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYS-ASKLFTPCALGTFSSLEYAREMFDQI 98
           P+ SL++QCK +   K  H Q+   G F + +S A   +  C     +S E    +   I
Sbjct: 32  PLISLLRQCKTLINAKLAHQQIFVHG-FTEMFSYAVGAYIECG----ASAEAVSLLQRLI 86

Query: 99  P-QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           P    ++ WN LIR  S     +   + F   +    + P+ +TFPFV+KA   +   R 
Sbjct: 87  PSHSTVFWWNALIRR-SVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRH 145

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISG 214
           G ++H +V  +    ++FI NS++  Y  CG L  A+ +F  + ++   D+VSWNS+++ 
Sbjct: 146 GASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAA 205

Query: 215 FVQGGFFEKAIELYREMEME---NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           +VQGG    A+ +   M       ++PD +T+V +L ACA    L+ G+         H 
Sbjct: 206 YVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ-------VHG 258

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
             +   +  D F   +++S  A+   M+   ++   +KK+ +        +++  Y++ G
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV----VSWNAMVTGYSQIG 314

Query: 332 NLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           + D AL +F  ++      DV  WS +IAG+A  G G EALD+F +MQ   ++PN VT  
Sbjct: 315 SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLA 374

Query: 388 NVLCACSHSGLVDEGR 403
           ++L  C+  G +  G+
Sbjct: 375 SLLSGCASVGALLYGK 390



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 14/188 (7%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD +TF  VL AC ++ ++  G  +HA +   G+  N ++  S++ MY +CG LD A ++
Sbjct: 125 PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQM 184

Query: 340 FHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQ---EAKVKPNAVTFTNVLCAC 393
           F  V  R   D+  W++++A +   G  R AL +  RM      K++P+A+T  N+L AC
Sbjct: 185 FDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPAC 244

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA---VEFIEKMPIVPG 450
           +    +  G+   +      G+V  V     +V M  +   ++EA    E I+K  +V  
Sbjct: 245 ASVFALQHGKQ-VHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVS- 302

Query: 451 ASVWGALL 458
              W A++
Sbjct: 303 ---WNAMV 307


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/633 (36%), Positives = 350/633 (55%), Gaps = 57/633 (9%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALG 83
           V NG       + SL+    ++ +L   +++H   ++  L  D   A+ L   +  C   
Sbjct: 357 VQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKC--- 413

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
              S+E +  +FD++   +  +W T+I  Y+ S+   ++   F +         +     
Sbjct: 414 --YSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKF-RTAQKEGIKVDPMMMG 470

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            +++A + L    + + +H   I++   D L + N +I  Y  CG++  A  +F M+ KK
Sbjct: 471 SILEACSGLKSISLLKQVHSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKK 529

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D+V+W SM++ F + G   +A+ L+ +M                                
Sbjct: 530 DIVTWTSMVNCFAENGLLHEAVALFGKM-------------------------------- 557

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
                     L+  + PD    V +L A A L ++  G +IH  + +    +   + +SL
Sbjct: 558 ----------LNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSL 607

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMY+ CG+++ AL+VF   K +DV +W+ MI    M+G G++A+ +F RM E  V P+ 
Sbjct: 608 VDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDH 667

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           V+F  +L ACSHS LVDEG+ + + M   Y + P  +HY C+VD+LGR+G  +EA +FI+
Sbjct: 668 VSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIK 727

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            MP+ P + VW ALLGAC+IH+N ELA  A   LLELEP+N G  VL+SN++A+ GKW+N
Sbjct: 728 SMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNN 787

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG- 562
           V E+R  M   GL+K+P CS IE+   +H F A + SH   + I+ KL EI  +L+  G 
Sbjct: 788 VKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQ 847

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           YV + S +L  V EE+ +   L+ HSERLAI++GLIS     P+RI KNLRVCGDCH   
Sbjct: 848 YVEDTSFVLHDVSEEE-KIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFT 906

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KL+SKL+ REI++RD  RFHHF GG CSC D+W
Sbjct: 907 KLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 143/537 (26%), Positives = 222/537 (41%), Gaps = 108/537 (20%)

Query: 21  RHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP---YSASKLF 77
           R P PT          H   V  L+   + + + +Q+H   + TG   D    + A+KL 
Sbjct: 50  RAPPPTD---------HYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLL 100

Query: 78  TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF- 136
                G    L  A  +FD +P   +++WN LI A  SS    ++  ++  +  + P   
Sbjct: 101 F--MYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAG 158

Query: 137 --PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
             P+  T   V+KA       R G  +HG+ +KS  +    ++N+L+  YA CG L  A 
Sbjct: 159 AAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSAL 218

Query: 195 CVF-VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
            VF  M   +DV SWNS ISG VQ G F +A++L+R M+ +    +  T V VL  CA+ 
Sbjct: 219 RVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAEL 278

Query: 254 RDLEFGR----------------------------WPNEALSIFHEL------------- 272
             L  GR                            W + AL +F E+             
Sbjct: 279 AQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLS 338

Query: 273 -----------------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                             +    NPD    VS+LSA   LG +  G ++HA   KQ +  
Sbjct: 339 CYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDS 398

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           +  +  +L+DMY KC +++ +  VF  ++ +D   W+T+IA +A      EA+  F   Q
Sbjct: 399 DLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQ 458

Query: 376 EAKVKPNAVTFTNVLCACS-----------HSGLVDEGRM---FFNQMEPVYGVVPGVKH 421
           +  +K + +   ++L ACS           HS  +  G +     N++  +YG    V +
Sbjct: 459 KEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCY 518

Query: 422 ---------------YTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGA 460
                          +T MV+     GLL EAV    KM    I P +     +LGA
Sbjct: 519 ALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGA 575



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           VL   A   A+  G Q+HA     G   +    +L T L+ MY KCG L  A  +F  + 
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP 120

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQE----AKVKPNAVTFTNVLCACSHSGLVD 400
           +R VF W+ +I      G   EA+ ++  M+     A   P+  T  +VL AC   G   
Sbjct: 121 ARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG--- 177

Query: 401 EGRMFFNQMEPVYG--VVPGVKHYT----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +GR        V+G  V  G+   T     +V M  + GLLD A+   E M      + W
Sbjct: 178 DGRC----GSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASW 233

Query: 455 GALLGAC 461
            + +  C
Sbjct: 234 NSAISGC 240


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 317/538 (58%), Gaps = 30/538 (5%)

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
            P     P   K+ A      +G+ IH    +   + ++F+++S I  YA CG    AY 
Sbjct: 9   LPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQ 68

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKR 254
           +F  +  +DVVSWN+MISGF   G F +A++++RE+  ++  KPD  TM ++L +  K R
Sbjct: 69  MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKAR 128

Query: 255 ------------DLEFG---RWPN------------EALSIFHELQLSKNVNPDEFTFVS 287
                       ++ F     W              EA+ +F  +Q    + PD  T  +
Sbjct: 129 VEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQ-KDGIEPDAVTLAT 187

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           VL +C ++ A+ +G +IH  +K++ +  +  L  +L+DMY  CG L +A +VF ++ +RD
Sbjct: 188 VLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD 247

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+++I+ +  +G GREA+DLF +M    ++P+++ F  +L ACSH+GL+D G+ +F 
Sbjct: 248 VVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFY 307

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M   + + P ++HY CMVD+LGRAG + EA +FI  MPI P   VWGALLGAC+IH N+
Sbjct: 308 SMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNM 367

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           ++   A   LL L P+  G  VLLSNIYA+ G+W +VS +R  M   G+KK PG S+ E+
Sbjct: 368 DIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAEL 427

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
              +H F  G++SHP  K IY KL E++ R++  GY P     L  VEEED +E  L++H
Sbjct: 428 GDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEED-KEGHLSVH 486

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
           SE+LAIA+ LI+  P  PIRI  NLR C DCH  AKLIS +  REI+L+D  R H+ +
Sbjct: 487 SEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 132/283 (46%), Gaps = 28/283 (9%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           + +FD++    L +WN ++  Y+++   +++  +F+++  +    P+  T   V+ +   
Sbjct: 136 KGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDG-IEPDAVTLATVLPSCGE 194

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +    +G+ IH ++ +      + + N+L+  YA CG L  A  VF  +G +DVVSW S+
Sbjct: 195 VSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSI 254

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEALSIFH 270
           IS + + G   +AI+L+ +M  + ++PD +  VA+L+AC+    L+ G+ +     S FH
Sbjct: 255 ISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFH 314

Query: 271 -------------------------ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
                                    +  +   + P+E  + ++L AC     MDIG+   
Sbjct: 315 IAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAA 374

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
             + +   K   Y    L ++Y + G       V   ++S+ +
Sbjct: 375 DSLLRLAPKQTGYYVL-LSNIYARAGRWADVSMVRSVMESKGI 416


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 319/568 (56%), Gaps = 43/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L YAR++FD +   N  +W+ +I  Y  S    ++  +F Q++      P   T   V++
Sbjct: 261 LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A A+L     G+ +H  +IK     D+ + N+L+  YA C                    
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKC-------------------- 360

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
                      G  + AI  +  M       D V+  A++S C +  +         ALS
Sbjct: 361 -----------GVIDDAIRFFDXMN----PKDSVSFSAIVSGCVQNGNAAV------ALS 399

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           IF  +QLS  ++PD  T + VL AC+ L A+  G   H  +  +G   +  +  +LIDMY
Sbjct: 400 IFRMMQLS-GIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMY 458

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG +  A EVF+ +   D+  W+ MI G+ ++G G EAL LF  +    +KP+ +TF 
Sbjct: 459 SKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFI 518

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L +CSHSGLV EGR++F+ M   + +VP ++H  CMVD+LGRAGL+DEA  FI  MP 
Sbjct: 519 CLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPF 578

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W ALL AC+IH+N+EL E     +  L PE+ G  VLLSNIY+  G+WD+ + +
Sbjct: 579 EPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 638

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R   +  GLKK PGCS IE+NG +H F+ G+ SH    +I  KL+E++  +K  GY    
Sbjct: 639 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAEC 698

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S + Q VEEE+ +EQ L  HSE+LAIA+G+++++  +PI + KNLRVCGDCH   K ++ 
Sbjct: 699 SFVFQDVEEEE-KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTV 757

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI +RD  RFHHF+ G C+C D+W
Sbjct: 758 ITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 225/526 (42%), Gaps = 92/526 (17%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP---YSASKLFTPCA 81
           P    V N + H    +     Q K++ + K+IH   L+     D    +  ++L+  C 
Sbjct: 2   PLRXEVKNNYLH----LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC- 56

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
               + +  AR +FD+IP P++  WN +IRAY+ +  P    +     + +    PN++T
Sbjct: 57  ----NQVVLARRLFDEIPNPSVILWNQIIRAYAWNG-PFDGAIDLYHSMLHLGVRPNKYT 111

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           +PFV+KA + L+    G  IH        E D+F+  +L+ FYA CG L  A  +F  + 
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            +DVV+WN+MI+G    G  + A++L  +M+ E + P+  T+V VL    + + L  G+ 
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK- 230

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                                     +H    ++       + T
Sbjct: 231 -----------------------------------------ALHGYCVRRSFDNGVVVGT 249

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVK 380
            L+DMY KC  L  A ++F  +  R+   WS MI G+    C +EAL+LF +M  +  + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P  VT  +VL AC+    +  GR     +  + G V  +     ++ M  + G++D+A+ 
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL-GXVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 441 FIEKM---------PIVPGASVWGALLGACKIHENVELAEY------------ACSHLLE 479
           F + M          IV G    G    A  I   ++L+              ACSHL  
Sbjct: 369 FFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 480 LEPE--NHGALVL------------LSNIYAKTGKWDNVSELRKHM 511
           L+    +HG L++            L ++Y+K GK     E+   M
Sbjct: 429 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 322/575 (56%), Gaps = 45/575 (7%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
            G    L  AR +F+ +   ++ TWN +I  Y  +    ++  +F +L  +     N+ T
Sbjct: 252 FGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIK-ANDIT 310

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  ++     L     G+ IH +V ++ ++ D+ ++ +L+  Y  C     A+ +FV +G
Sbjct: 311 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG 370

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            KDV++W  M   + Q GF                                         
Sbjct: 371 SKDVITWTVMCVAYAQNGF----------------------------------------- 389

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EAL +F E+QL     P   T V+VL  CA L A+  G QIH+ + + G ++   + T
Sbjct: 390 RKEALQLFQEMQLEGR-RPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVET 448

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +LI+MY KCG + +A  VF  +  RD+ VW++M+  +A +G   E L LF++MQ    K 
Sbjct: 449 ALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKA 508

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +AV+F +VL A SHSG V +G  +F  M   + + P  + Y C+VD+LGRAG + EAV+ 
Sbjct: 509 DAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 568

Query: 442 IEKMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           + K+   +P   +W  LLGAC+ H   + A+ A   +LE +P + GA V+LSN+YA  G 
Sbjct: 569 VLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGD 628

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           WD V+ +RK MR  G+KKEPG SSIE+   +H+FL G+ SHP    IY++LD + + +++
Sbjct: 629 WDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRA 688

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            GY+P+   +L  VE+E  +E  L  HSERLAIA+GL+S  P  P+R++KNLRVC DCHT
Sbjct: 689 AGYIPDTKMILHDVEDER-KEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHT 747

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K ISKL  REIL+RD +RFH+F+ G CSC DYW
Sbjct: 748 ATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 214/492 (43%), Gaps = 71/492 (14%)

Query: 38  PHPVF--SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAR 92
           P   F  +L+++C   KN+   +++H  +   G   +      L    A     S+  A+
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYA--QCGSVPEAQ 60

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++F+ + + +++ W  +I  Y    +  ++  +F Q+       P + T+  ++ A A  
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM-QEEDVMPTKVTYVAILNACAST 119

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
              + G  IHG +++  FE D+F+  +LI+ Y  CG +  A+  F  +  +DVVSW +MI
Sbjct: 120 ESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 179

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG------------- 259
           +  VQ   F  A  LYR M+++ V P+++T+  V +A      L  G             
Sbjct: 180 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVME 239

Query: 260 ---RWPNEALSIFHELQL------------------------------------------ 274
              R  N A+++F    L                                          
Sbjct: 240 SDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRL 299

Query: 275 -SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               +  ++ TFV +L+    L ++  G  IH  +K+ G   +  + T+L+ +Y +C   
Sbjct: 300 QQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAP 359

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            +A ++F  + S+DV  W+ M   +A  G  +EAL LF  MQ    +P + T   VL  C
Sbjct: 360 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 419

Query: 394 SHSGLVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           +H   + +GR   +  +E  + +   V+  T +++M G+ G + EA    EKM       
Sbjct: 420 AHLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDIL 476

Query: 453 VWGALLGACKIH 464
           VW ++LGA   H
Sbjct: 477 VWNSMLGAYAQH 488



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 2/193 (1%)

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD   FV++L  C+    +D G ++H  +  +G + N  +   LI MY +CG++ +A +V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ +DVF W+ MI  +   G    AL +F +MQE  V P  VT+  +L AC+ +  +
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            +G     Q+    G    V   T +++M  + G +  A +  +++      S W A++ 
Sbjct: 123 KDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMIA 180

Query: 460 ACKIHENVELAEY 472
           AC  H+   LA +
Sbjct: 181 ACVQHDQFALARW 193


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 324/559 (57%), Gaps = 46/559 (8%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P P+ + + +L RA +    P  +   +  L+  +  F + F F  V KA A L   R G
Sbjct: 66  PAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPF-SSFAFTSVAKACADLSAIRAG 124

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             IH   +      + F+  SL+  Y+ CG L +A  +F  I  K VV+WN+MISG+ Q 
Sbjct: 125 MGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQN 184

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G   +AIE+YR                                         E+Q++   
Sbjct: 185 GLAGRAIEVYR-----------------------------------------EMQMAGEA 203

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TFV+ LSACAQ GA+D+G Q+   +  + +++N  L  +L++MY +CG ++KA E
Sbjct: 204 -PDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKARE 262

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            F+ ++ R+V  W++MIAG+ M+G G EA+ LF+ M++    PN VTF  VL AC+H+GL
Sbjct: 263 WFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGL 322

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGAL 457
           V EGR  F  M+ VYG+VP V+HY  MVDM GRAGLLD+A+ FI + +P  PG  VW A+
Sbjct: 323 VSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAM 382

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGACK+H++  L       L+ LEPE+    VLLSN+YA +GK ++V ++R  M    LK
Sbjct: 383 LGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLK 442

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K  G S IE+ G  H F  GE SHP   EIY  L++++ ++   GYVP    +L  +EEE
Sbjct: 443 KPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEE 502

Query: 578 DVQEQALNLHSERLAIAYGLISVEP-SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
             +E AL  H E+LA+A+GL+     + PIRI+KNLR+C DCH   K +S + NREI++R
Sbjct: 503 -EREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICEDCHLAIKYMSAVENREIIVR 561

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D +RFHHF+ G CSC +YW
Sbjct: 562 DMHRFHHFKAGKCSCQEYW 580



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 57/328 (17%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S+ K C ++  ++    IH   +  GL  + +  + L   ++ C       L+ AR++FD
Sbjct: 110 SVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCG-----QLDVARKLFD 164

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            I   ++  WN +I  Y  +    ++  ++ ++       P+  TF   + A A+     
Sbjct: 165 AIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEA-PDSATFVATLSACAQAGALD 223

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ +  +++    E ++ +  +L++ YA CG +  A   F M+ +++VV+W SMI+G+ 
Sbjct: 224 LGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYG 283

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +A++L+  M  +   P++VT VAVLSACA    +  GR                
Sbjct: 284 MHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGR---------------- 327

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNCYLTTSLIDMYTKCGNLDK 335
               D F                      A MK   G+        S++DMY + G LD 
Sbjct: 328 ----DAF----------------------ASMKSVYGLVPRVEHYCSMVDMYGRAGLLDD 361

Query: 336 ALEVFHTVKSRDVF--VWSTMIAGFAMY 361
           A+   H     +    VW+ M+    M+
Sbjct: 362 AMRFIHDSIPGEPGPEVWTAMLGACKMH 389


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/485 (43%), Positives = 293/485 (60%), Gaps = 43/485 (8%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E  L    ++I  YA  G +  A  +F  + ++D + WN MI G+ Q G           
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGL---------- 52

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                          PNE L +F ++ L+  V P+E T ++VLS
Sbjct: 53  -------------------------------PNEGLLLFRQM-LNAKVRPNEVTVLAVLS 80

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC Q GA++ G  +H+ ++  GI +N  + TSLIDMY+KCG+L+ A  VF  + ++DV  
Sbjct: 81  ACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVA 140

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W++M+ G+AM+G  ++AL LF  M     +P  +TF  VL ACSH+GLV EG  FF  M+
Sbjct: 141 WNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMK 200

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ P V+HY CMV++LGRAG L+EA E ++ M I     +WG LLGAC++H N+ L 
Sbjct: 201 DEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALG 260

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E    +L+     N G  VLLSNIYA  G W+ V+ +R  M+ SG +KEPGCSSIEVN +
Sbjct: 261 EQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNNK 320

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+FLAG+  HP  +EIY  L+EI   LK+ GY P    +L  +E+   +E++L +HSE+
Sbjct: 321 VHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQ-KERSLGVHSEK 379

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+GLI+ +P   I+IVKNLRVC DCH V KLISK+  R++++RDR RFHHF  G CS
Sbjct: 380 LALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFHHFVNGLCS 439

Query: 651 CMDYW 655
           C DYW
Sbjct: 440 CGDYW 444



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 30/287 (10%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           +  ++ AR +FD + + +   WN +I  Y+    P +  ++F Q++ N+   PNE T   
Sbjct: 19  YGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML-NAKVRPNEVTVLA 77

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+ A  +      G+ +H  +  +    ++ +  SLI  Y+ CG L  A  VF  I  KD
Sbjct: 78  VLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKD 137

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK----------- 253
           VV+WNSM+ G+   GF + A+ L++EM M   +P ++T + VL+AC+             
Sbjct: 138 VVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFY 197

Query: 254 --RDLEFGRWP------------NEALSIFHELQLSKN--VNPDEFTFVSVLSACAQLGA 297
             +D E+G  P              A  +    +L KN  ++ D   + ++L AC   G 
Sbjct: 198 SMKD-EYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGN 256

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + +G QI   +  Q +  N      L ++Y   GN +    V   +K
Sbjct: 257 IALGEQIAEYLVSQNLA-NSGTYVLLSNIYAAAGNWEGVARVRTLMK 302


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 343/618 (55%), Gaps = 49/618 (7%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           V +++  C    QL   K+IH    R G   D   A+      A    SSL+ A  +F  
Sbjct: 404 VLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVA--AYAKCSSLDCAERVFCG 461

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +    + +WN LI A++ +  P +S  +FL ++ +S   P+ FT   ++ A ARL   R 
Sbjct: 462 MEGKTVSSWNALIGAHAQNGFPGKSLDLFL-VMMDSGMDPDRFTIGSLLLACARLKFLRC 520

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IHG ++++  E D FI  SL+  Y  C  + +   +F  +  K +V WN MI+GF Q
Sbjct: 521 GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ 580

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                                                       P EAL  F ++ LS  
Sbjct: 581 N-----------------------------------------ELPCEALDTFRQM-LSGG 598

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           + P E     VL AC+Q+ A+ +G ++H+   K  +  + ++T +LIDMY KCG ++++ 
Sbjct: 599 IKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQ 658

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            +F  V  +D  VW+ +IAG+ ++G G +A++LF  MQ    +P++ TF  VL AC+H+G
Sbjct: 659 NIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAG 718

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV EG  +  QM+ +YGV P ++HY C+VDMLGRAG L EA++ + +MP  P + +W +L
Sbjct: 719 LVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSL 778

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           L +C+ + ++E+ E     LLELEP      VLLSN+YA  GKWD V ++R+ M+ +GL 
Sbjct: 779 LSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLH 838

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           K+ GCS IE+ G +++FL  + S    K+I     ++  ++   GY P+ S +L  +EEE
Sbjct: 839 KDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEE 898

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
             + + L  HSE+LAI++GL++      +R+ KNLR+C DCH   KL+SK+  R+I++RD
Sbjct: 899 G-KIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRD 957

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G C+C D+W
Sbjct: 958 NKRFHHFKNGLCTCGDFW 975



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 148/308 (48%), Gaps = 46/308 (14%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           +R +FD   + +L+ +N L+  YS +A    +  +FL+L+  +   P+ FT P V KA A
Sbjct: 147 SRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACA 206

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            +    +G+A+H + +K+    D F+ N+LI  Y  CG +  A  VF  +  +++VSWNS
Sbjct: 207 GVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNS 266

Query: 211 MISGFVQGGFFEKAIELYREM---EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           ++    + G F +   +++ +   E E + PD  TMV V+ AC                 
Sbjct: 267 VMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPAC----------------- 309

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                                    A +G + +G+ +H    K GI     +  SL+DMY
Sbjct: 310 -------------------------AAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMY 344

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTF 386
           +KCG L +A  +F     ++V  W+T+I G++  G  R   +L   MQ E KV+ N VT 
Sbjct: 345 SKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTV 404

Query: 387 TNVLCACS 394
            NVL ACS
Sbjct: 405 LNVLPACS 412



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 164/355 (46%), Gaps = 50/355 (14%)

Query: 46  KQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           K C  +  ++    +H   L+ G F D +  + L      G    +E A ++F+ +   N
Sbjct: 203 KACAGVADVELGEAVHALALKAGGFSDAFVGNALIA--MYGKCGFVESAVKVFETMRNRN 260

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP--YFPNEFTFPFVIKAAARLVQFRVGQA 160
           L +WN+++ A S +    +   +F +L+ +      P+  T   VI A A + + R+G  
Sbjct: 261 LVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMV 320

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +HG+  K    +++ ++NSL+  Y+ CG L  A  +F M G K+VVSWN++I G+ + G 
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGD 380

Query: 221 FEKAIELYREMEM-ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
           F    EL +EM+  E V+ +EVT++ VL AC+ +  L               L L     
Sbjct: 381 FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQL---------------LSLK---- 421

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                  +IH    + G   +  +  + +  Y KC +LD A  V
Sbjct: 422 -----------------------EIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERV 458

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           F  ++ + V  W+ +I   A  G   ++LDLF  M ++ + P+  T  ++L AC+
Sbjct: 459 FCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 141/320 (44%), Gaps = 50/320 (15%)

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
            +++A        VG+ +H +V  S    +D+ +S  +I  Y+ CG  + +  VF    +
Sbjct: 97  ILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKE 156

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           KD+  +N+++SG+ +   F  AI                                     
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAI------------------------------------- 179

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
               S+F EL  + ++ PD FT   V  ACA +  +++G  +HA   K G   + ++  +
Sbjct: 180 ----SLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNA 235

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM---QEAKV 379
           LI MY KCG ++ A++VF T+++R++  W++++   +  G   E   +F R+   +E  +
Sbjct: 236 LIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGL 295

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            P+  T   V+ AC+  G V  G M  + +    G+   V     +VDM  + G L EA 
Sbjct: 296 VPDVATMVTVIPACAAVGEVRMG-MVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEAR 354

Query: 440 EFIE----KMPIVPGASVWG 455
              +    K  +     +WG
Sbjct: 355 ALFDMNGGKNVVSWNTIIWG 374



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 21/270 (7%)

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSV---LSACAQLGAMDIGVQIHAKMK-KQGIKLNCY 318
           N+AL++ H    +  V+  + +  ++   L AC     + +G ++HA +     ++ +  
Sbjct: 70  NDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVV 129

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA- 377
           L+T +I MY+ CG+   +  VF   K +D+F+++ +++G++     R+A+ LF  +  A 
Sbjct: 130 LSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSAT 189

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT------CMVDMLGR 431
            + P+  T   V  AC+    V+ G       E V+ +      ++       ++ M G+
Sbjct: 190 DLAPDNFTLPCVAKACAGVADVELG-------EAVHALALKAGGFSDAFVGNALIAMYGK 242

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491
            G ++ AV+  E M      S W +++ AC   EN    E        L  E  G +  +
Sbjct: 243 CGFVESAVKVFETMRNRNLVS-WNSVMYACS--ENGGFGECCGVFKRLLISEEEGLVPDV 299

Query: 492 SNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521
           + +         V E+R  M V GL  + G
Sbjct: 300 ATMVTVIPACAAVGEVRMGMVVHGLAFKLG 329


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/595 (36%), Positives = 349/595 (58%), Gaps = 31/595 (5%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E  R +FD +P  +  ++NT+I  ++ +     +  +FL++       P E+T   V+ 
Sbjct: 105 VEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRM-QKEGLKPTEYTHVSVLN 163

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A  +L+  R G+ IHG +I  +   ++F+ N+L   YA CG++  A  +F  +  ++VV+
Sbjct: 164 ACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVT 223

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------- 260
           WN MISG+++    EK I+L+ EM++ N+KPD+VT  +VL A  +   ++  R       
Sbjct: 224 WNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIR 283

Query: 261 ------WP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                 W              +AL +F E+ L +N  PD +T  SV+S+CA+L ++  G 
Sbjct: 284 EKDEVCWTIMIVGCAQNGKEEDALLLFSEMLL-ENARPDGYTISSVVSSCAKLASLYHGQ 342

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            +H K    G+  +  ++++L+DMY KCG    A  +F T+++R+V  W++MI G+A+ G
Sbjct: 343 VVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNG 402

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
              EAL L+  M E  +KP++VTF  VL AC H+GLV+EG+ +F  M   +G+ P   HY
Sbjct: 403 QDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHY 462

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            CMV++ GR+G +D+AV+ I  M   P + +W  +L  C +  +++  E A   L+EL P
Sbjct: 463 ACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNP 522

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            N    ++LSN+YA  G+W +V+ +R  M+   +KK    S IE++ E+HKF+A + +HP
Sbjct: 523 FNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHP 582

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
             K I+ +L+ ++ +L+  G+ PN + +L     ED + +++N HSE+LA+AYGLI  +P
Sbjct: 583 DAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDF-GEDEKLESINYHSEKLALAYGLIK-KP 640

Query: 603 S--QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
               PIRI+KN+R C DCH   K +S +  R ++LRD  RFHHF  G CSC DYW
Sbjct: 641 HGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 11/239 (4%)

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           +D FI N L++ YA  G+++ A  +F  + ++D  SWN+M+S + + G  E    ++  M
Sbjct: 56  NDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNM 115

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                  D V+   V+S  A       GR    AL +F  +Q  + + P E+T VSVL+A
Sbjct: 116 PSR----DSVSYNTVISGFAGN-----GR-GGPALGVFLRMQ-KEGLKPTEYTHVSVLNA 164

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           C QL  +  G QIH ++    +  N ++  +L D+Y +CG +D+A  +F  +  R+V  W
Sbjct: 165 CTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTW 224

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           + MI+G+       + +DLF  MQ + +KP+ VT ++VL A   +G +DE R  F ++ 
Sbjct: 225 NLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIR 283


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 337/573 (58%), Gaps = 21/573 (3%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           ARE+ D +  P    WN +I  Y       ++F  F ++ ++     +E+T+  +I A  
Sbjct: 236 ARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRM-HSMGIQEDEYTYTSLISACG 294

Query: 151 ----RLVQFRVGQAIHGMVIKSSFEDD----LFISNSLIHFYAICGDLAMAYCVFVMIGK 202
               ++  F  G+ +HG ++++  E      L ++N+LI FY     +  A  VF  +  
Sbjct: 295 SCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPV 354

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           +D++SWN+++SG+V     E+A  ++ EM   NV    +T   ++S  A+     FG   
Sbjct: 355 RDIISWNAVLSGYVNAQRIEEANSIFSEMPERNV----LTWTVMISGLAQN---GFGE-- 405

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            E L +F++++ S+ + P ++ F   ++AC+ LG++D G QIH+++ + G         +
Sbjct: 406 -EGLKLFNQMK-SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNA 463

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LI MY++CG ++ A  VF T+   D   W+ MIA  A +G G +A++LF +M +  + P+
Sbjct: 464 LITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPD 523

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            +TF  +L AC+H+GL+ EGR +F+ M   YG+ PG  HY  ++D+L RAG+  +A   I
Sbjct: 524 RITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVI 583

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           + MP   GA +W ALL  C+IH N+EL   A   LLEL P   G  ++LSN+YA  G+WD
Sbjct: 584 KSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWD 643

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
            V+ +R  MR  G+KKEPGCS +EV   +H FL  ++ HP  + +Y+ L ++V  +K  G
Sbjct: 644 EVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLG 703

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           YVP+   +L  +E E  +E +L+ HSE+LA+ YG++ +     IR+ KNLR+CGDCH   
Sbjct: 704 YVPDTKFVLHDMESEH-KEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAF 762

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K ISK+  REI++RDR RFHHF+ G CSC +YW
Sbjct: 763 KYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 203/493 (41%), Gaps = 98/493 (19%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + +H  +L +G   + +  ++L         S++ YAR++FD+IP+P++    TL+ AYS
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKS--SNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 115 SS-----------AEPIQ----------------------SFMIFLQLVYNSPYFPNEFT 141
           SS           A P+                       +  +F+Q+     + P+ FT
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQM-KRYGFLPDPFT 141

Query: 142 FPFVIKAAARLV-QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD---------LA 191
           F  V+ A + +  + R  Q +H  VIK        ++N+L+  Y  C           +A
Sbjct: 142 FSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201

Query: 192 MAYCVFVMIGKKDV---------------------------------VSWNSMISGFVQG 218
            A  VF    K  +                                 V+WN+MISG+V+ 
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF------HEL 272
           G +E+A + +R M    ++ DE T  +++SAC            NE + +F      H  
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGS---------CNEKMGMFNCGRQVHGY 312

Query: 273 QLSKNVNPDEFTFVSVLSACAQL-GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
            L   V P     +SV +A        D  ++      K  ++ +     +++  Y    
Sbjct: 313 ILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSGYVNAQ 371

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
            +++A  +F  +  R+V  W+ MI+G A  G G E L LF++M+   ++P    F   + 
Sbjct: 372 RIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAIT 431

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACS  G +D G+   +Q+  + G   G+     ++ M  R G+++ A      MP V   
Sbjct: 432 ACSVLGSLDNGQQIHSQVIRL-GHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV 490

Query: 452 SVWGALLGACKIH 464
           S W A++ A   H
Sbjct: 491 S-WNAMIAALAQH 502



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 173/418 (41%), Gaps = 77/418 (18%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + +A+H  ++ S F+ + FI N LI+ Y    ++  A  +F  I K D+V+  +++S + 
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 217 QGGFFEKAIELYREMEMENVKP----DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
             G  + A +L+      N  P    D V+  A+++A +   D       + AL++F ++
Sbjct: 83  SSGNVKLAQQLF------NATPLTIRDTVSYNAMITAYSHGND------GHAALNLFVQM 130

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ-IHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           +      PD FTF SVLSA + +   +   Q +H ++ K G  L   +T +L+  Y  C 
Sbjct: 131 K-RYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCA 189

Query: 332 N---------LDKALEVFHTVKSRDVF--------------------------------- 349
           +         +  A +VF       ++                                 
Sbjct: 190 SSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDV 249

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+ MI+G+   G   EA D F RM    ++ +  T+T+++ AC   G  +E    FN  
Sbjct: 250 AWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCG 306

Query: 410 EPVYG-----VVPGVKHY-----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
             V+G     VV    H+       ++    +   + EA    +KMP+    S W A+L 
Sbjct: 307 RQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIIS-WNAVLS 365

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
               + N +  E A S   E+   N     ++ +  A+ G  +   +L   M+  GL+
Sbjct: 366 G---YVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/594 (38%), Positives = 353/594 (59%), Gaps = 22/594 (3%)

Query: 67  FFDPYSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
            FD      + T  A+ T       LE AR  FD +P+ ++ +WN ++  Y+ +    + 
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEV 244

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F ++V N+   P+E T+  VI A +      +  ++   + +   + + F+  +L+ 
Sbjct: 245 LRLFDEMV-NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLD 303

Query: 183 FYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241
            YA CG +  A  +F  +G  ++ V+WN+MIS + + G  + A EL+  M   NV    V
Sbjct: 304 MYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNV----V 359

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           T  ++++  A+            A+ +F E+  +K + PDE T VSV+SAC  LGA+++G
Sbjct: 360 TWNSMIAGYAQNGQSAM------AIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
             +   + +  IKL+     ++I MY++CG+++ A  VF  + +RDV  ++T+I+GFA +
Sbjct: 414 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 473

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G G EA++L S M+E  ++P+ VTF  VL ACSH+GL++EGR  F  ++      P + H
Sbjct: 474 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDH 528

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y CMVD+LGR G L++A   +E+MP+ P A V+G+LL A +IH+ VEL E A + L ELE
Sbjct: 529 YACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELE 588

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P+N G  +LLSNIYA  G+W +V  +R+ M+  G+KK  G S +E  G++HKF+  + SH
Sbjct: 589 PDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 648

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
               +IY  L E+  +++  GY+ ++S +L+ VEEE  +E+ +  HSE+LAI Y L+  E
Sbjct: 649 ERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEE-EKEEIVGTHSEKLAICYALLVSE 707

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
               IR+VKNLRVC DCHT  K+ISKL  R I++RD  RFH F  G CSC DYW
Sbjct: 708 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 212/467 (45%), Gaps = 79/467 (16%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S+  +  N   L+Q+H Q++   L    Y  + L   C     +   Y   +F+    PN
Sbjct: 6   SIASRVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTR-LRAPPHYTHLLFNSTLNPN 64

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ + +++R YS   +  +  ++F + +      P+ F +P +IK+A        G   H
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMF-EHMQGCGVRPDAFVYPILIKSAGN-----GGIGFH 118

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--KKDVVSWNSMISGFVQGGF 220
             V+K     D F+ N++I  YA  G +  A  VF  I   ++ V  WN+M+SG+ +   
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W------ 261
             +A  L+  M   NV    +T  A+++  AK +DLE  R             W      
Sbjct: 179 EGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSG 234

Query: 262 ------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                   E L +F E+ ++  + PDE T+V+V+SAC+  G   +   +   + ++ I+L
Sbjct: 235 YAQNGLAEEVLRLFDEM-VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQL 293

Query: 316 NCYLTTSLIDMYTKC--------------------------------GNLDKALEVFHTV 343
           NC++ T+L+DMY KC                                GNLD A E+F+T+
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSHSGLVDEG 402
             R+V  W++MIAG+A  G    A++LF  M  A K+ P+ VT  +V+ AC H G ++ G
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 403 RM---FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
                F  + +    +   +  +  M+ M  R G +++A    ++M 
Sbjct: 414 NWVVRFLTENQ----IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA 456



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 20/228 (8%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD F +  ++ +     A + G+  HA + K G   + ++  ++IDMY + G +  A 
Sbjct: 96  VRPDAFVYPILIKS-----AGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHAR 150

Query: 338 EVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +VF  +    R V  W+ M++G+  +    +A  LF  M E     N +T+T ++   + 
Sbjct: 151 KVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE----RNVITWTAMVTGYAK 206

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGAS 452
              ++  R +F+ M P   VV     +  M+    + GL +E +   ++M    I P  +
Sbjct: 207 VKDLEAARRYFDCM-PERSVVS----WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDET 261

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPE-NHGALVLLSNIYAKTG 499
            W  ++ AC    +  LA      L + + + N      L ++YAK G
Sbjct: 262 TWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCG 309


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/639 (35%), Positives = 359/639 (56%), Gaps = 49/639 (7%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           KQ  Q H   L++G  +    ++ L   ++ CA  + S L  AR++FD+I + +  +W T
Sbjct: 166 KQCVQFHAAALKSGAGYITSVSNALVSVYSKCA-SSPSLLHSARKVFDEILEKDERSWTT 224

Query: 109 LIRAYSSSA------EPIQSFMIFLQLV-YN---SPYFP--------------------- 137
           ++  Y  +       E ++     ++LV YN   S Y                       
Sbjct: 225 MMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL 284

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF-ISNSLIHFYAICGDLAMAYCV 196
           +EFT+P VI+A A     ++G+ +H  V++   ED  F   NSL+  Y  CG    A  +
Sbjct: 285 DEFTYPSVIRACATAGLLQLGKQVHAYVLRR--EDFSFHFDNSLVSLYYKCGKFDEARAI 342

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD+VSWN+++SG+V  G   +A  +++EM+ +N+    ++ + ++S  A+    
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAEN--- 395

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            FG    E L +F  ++  +   P ++ F   + +CA LGA   G Q HA++ K G   +
Sbjct: 396 GFG---EEGLKLFSCMK-REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSS 451

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
                +LI MY KCG +++A +VF T+   D   W+ +IA    +G G EA+D++  M +
Sbjct: 452 LSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLK 511

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             ++P+ +T   VL ACSH+GLVD+GR +F+ ME VY + PG  HY  ++D+L R+G   
Sbjct: 512 KGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFS 571

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           +A   IE +P  P A +W ALL  C++H N+EL   A   L  L PE+ G  +LLSN++A
Sbjct: 572 DAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHA 631

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
            TG+W+ V+ +RK MR  G+KKE  CS IE+  ++H FL  ++SHP  + +Y  L ++  
Sbjct: 632 ATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGK 691

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            ++  GYVP+ S +L  VE +  +E  L  HSE++A+A+GL+ + P   IRI KNLR CG
Sbjct: 692 EMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   + +S +  R+I+LRDR RFHHFR G CSC ++W
Sbjct: 752 DCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 42/254 (16%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLF---FDPYSASKLFTPCALGTFSSLEYAREMFD 96
           S+I+ C     L   KQ+H  +LR   F   FD  S   L+  C  G F     AR +F+
Sbjct: 291 SVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN-SLVSLYYKC--GKFDE---ARAIFE 344

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL--------------------------- 129
           ++P  +L +WN L+  Y SS    ++ +IF ++                           
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 130 ---VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
              +    + P ++ F   IK+ A L  +  GQ  H  ++K  F+  L   N+LI  YA 
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAK 464

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG +  A  VF  +   D VSWN++I+   Q G   +A+++Y EM  + ++PD +T++ V
Sbjct: 465 CGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524

Query: 247 LSACAKKRDLEFGR 260
           L+AC+    ++ GR
Sbjct: 525 LTACSHAGLVDQGR 538



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 32/301 (10%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           E D     +++  Y   GD+ +A  VF    +  +D V +N+MI+GF        AI L+
Sbjct: 77  EPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLF 136

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN---VNPDEFTF 285
            +M+ E  KPD  T  +VL+  A   D E      +    FH   L      +       
Sbjct: 137 CKMKHEGFKPDNFTFASVLAGLALVADDE------KQCVQFHAAALKSGAGYITSVSNAL 190

Query: 286 VSVLSACAQLGAMDIGVQIHAKMK--KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           VSV S CA   ++     +H+  K   + ++ +    T+++  Y K G  D   E+   +
Sbjct: 191 VSVYSKCASSPSL-----LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245

Query: 344 KSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
                +  ++ MI+G+   G  +EAL++  RM  + ++ +  T+ +V+ AC+ +GL+  G
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305

Query: 403 RMFFNQMEPVYGVVPGVKHYT-----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           +        V+  V   + ++      +V +  + G  DEA    EKMP     S W AL
Sbjct: 306 KQ-------VHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNAL 357

Query: 458 L 458
           L
Sbjct: 358 L 358


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/675 (33%), Positives = 380/675 (56%), Gaps = 68/675 (10%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+++ C  +  +++   IH  + + G+  D    + L +      F+ L   R +FD++ 
Sbjct: 280 SVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS--MYCKFNGLIDGRRIFDKMV 337

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             +  +WNT+I  YS      +S  +F+++V  + + P+  T   +++A   L     G+
Sbjct: 338 LRDAVSWNTMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEFGK 395

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H  +I S +E D   SN LI+ YA CG+L  +  VF  +  KD VSWNSMI+ ++Q G
Sbjct: 396 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 455

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----------------WPN 263
            F++A++L++ M+ + VKPD VT V +LS   +  DL  G+                  N
Sbjct: 456 SFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSN 514

Query: 264 EALSIFHE-------LQLSKNVNP-DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
             + ++ +       L++ +N+   D  T+ +++++C      ++G+++ ++M+ +G+  
Sbjct: 515 TLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP 574

Query: 316 N----------CYLTTS-------------------------LIDMYTKCGNLDKALEVF 340
           +          C L  +                         LI+MY+KCG+L  + +VF
Sbjct: 575 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 634

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +K++DV  W+ +I+   MYG G++A+  F  M+ A + P+ V F  ++ ACSHSGLV+
Sbjct: 635 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 694

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG  +F++M+  Y + P ++HY C+VD+L R+ LLD+A +FI  MP+ P +S+WGALL A
Sbjct: 695 EGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSA 754

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C++  + E+A+     ++EL P++ G  VL+SN+YA  GKWD V  +RK ++  GLKK+P
Sbjct: 755 CRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDP 814

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           GCS +E+  +++ F  G       +E+   L  +   +   GY+ N   +L  + +ED +
Sbjct: 815 GCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI-DEDEK 873

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
              L  HSERLAIA+GL++ +P  P++++KNLRVC DCHTV K ISK+  RE+L+RD  R
Sbjct: 874 RDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANR 933

Query: 641 FHHFRGGNCSCMDYW 655
           FH F+ G CSC DYW
Sbjct: 934 FHVFKDGACSCGDYW 948



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 199/431 (46%), Gaps = 52/431 (12%)

Query: 43  SLIKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+I  C  +   +  K IH ++L  G   D Y  + L        F+ L+ AR++F+++P
Sbjct: 179 SVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALID--MYCRFNDLDKARKVFEEMP 236

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++ +WN+LI  Y+++    ++  I+ +   N    P+ +T   V++A   L     G 
Sbjct: 237 LRDVVSWNSLISGYNANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEEGD 295

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG++ K   + D+ ++N L+  Y     L     +F  +  +D VSWN+MI G+ Q G
Sbjct: 296 IIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 355

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
            +E++I+L+ EM +   KPD +T+ ++L AC    DLEFG++                  
Sbjct: 356 LYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKY------------------ 396

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                                   +H  M   G + +   +  LI+MY KCGNL  + EV
Sbjct: 397 ------------------------VHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 432

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +K +D   W++MI  +   G   EA+ LF +M +  VKP++VT+  +L   +  G +
Sbjct: 433 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDL 491

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
             G+     +  + G    +     +VDM  + G + ++++  E M        W  ++ 
Sbjct: 492 XLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNTIIA 549

Query: 460 ACKIHENVELA 470
           +C   E+  L 
Sbjct: 550 SCVHSEDCNLG 560



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 169/391 (43%), Gaps = 51/391 (13%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  + +A A          +H ++I       +  S  LI  YA   D   ++ VF +  
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 202 -KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
              +V  WNS+I      G F                                       
Sbjct: 135 PSNNVYXWNSIIRALTHNGLF--------------------------------------- 155

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
             +EALS++ E Q  + + PD +TF SV++ACA L   ++   IH ++   G   + Y+ 
Sbjct: 156 --SEALSLYSETQRIR-LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIG 212

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            +LIDMY +  +LDKA +VF  +  RDV  W+++I+G+   G   EAL+++ R +   V 
Sbjct: 213 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 272

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P++ T ++VL AC   G V+EG +    +E + G+   V     ++ M  +   L +   
Sbjct: 273 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKI-GIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
             +KM ++  A  W  ++     +  V L E +    +E+  +    L+ +++I    G 
Sbjct: 332 IFDKM-VLRDAVSWNTMICG---YSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGH 387

Query: 501 WDNV---SELRKHMRVSGLKKEPGCSSIEVN 528
             ++     +  +M  SG + +   S+I +N
Sbjct: 388 LGDLEFGKYVHDYMITSGYECDTTASNILIN 418


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/642 (36%), Positives = 359/642 (55%), Gaps = 66/642 (10%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTP 79
           PNPT  T              LI  C     L     +H +++ +GL  DPY A+KL   
Sbjct: 70  PNPTKKTFE-----------LLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINM 118

Query: 80  -CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP- 137
            C LG   S+++A ++FD+  +  ++ WN + RA + ++      +++ Q+  N    P 
Sbjct: 119 YCDLG---SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQM--NWIGIPS 173

Query: 138 NEFTFPFVIKAAA----RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
           N FT+ +V+KA       +   R G+ IH  +++  +E  + +  +L+  YA  G ++ A
Sbjct: 174 NRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYA 233

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  +  K++VSW++MI+ + +     KA+EL++ M              +L AC   
Sbjct: 234 SSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIM--------------MLEAC--- 276

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                                  +  P+  T VSVL ACA L A++ G  +HA + ++G+
Sbjct: 277 -----------------------DTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGL 313

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
                +  +LI MY +CG +     VF  +K RDV  W+++I+ + M+G G++A+ +F  
Sbjct: 314 DSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFEN 373

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M    V P+ +TF  VLCACSH+GLV+E ++ F  M   Y + P ++HY CMVD+LGRA 
Sbjct: 374 MINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRAN 433

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            LDEA+E I+ M   PG +VWG+LLG+C+IH NVELAE A + L ELEP+N G  VLLS+
Sbjct: 434 RLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSH 493

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           IYAK+  W++V  +RK +   GL+K P CS IEV  +I+  ++ E  +P  +E+ + L  
Sbjct: 494 IYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLIT 553

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           ++  +K+ GYVP  + +   ++EE+ +   L  HS +LA+A+GLI+    + IRI  NLR
Sbjct: 554 LLTEIKNQGYVPQTNVVTYDLDEEEKERIVLG-HSGKLAVAFGLINTSKGEIIRISNNLR 612

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +C DCH   K +SK  NREILLRD  RFH F+ G CSC DYW
Sbjct: 613 LCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 352/620 (56%), Gaps = 21/620 (3%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP- 99
           +F +  +C  +   +++  +M       D  + S L   CA      LE    +  ++  
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDK----DVVTCSALL--CAYARKGCLEEVVRILSEMES 210

Query: 100 ---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
              + N+ +WN ++  ++ S    ++ ++F Q +++  + P++ T   V+ +        
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMF-QKIHHLGFCPDQVTVSSVLPSVGDSEMLN 269

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G+ IHG VIK     D  + +++I  Y   G +     +F      +    N+ I+G  
Sbjct: 270 MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK-RDLEFGRWPNEALSIFHELQLS 275
           + G  +KA+E++   + + ++ + V+  ++++ CA+  +D+E       AL +F E+Q++
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE-------ALELFREMQVA 382

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             V P+  T  S+L AC  + A+  G   H    +  +  N ++ ++LIDMY KCG ++ 
Sbjct: 383 -GVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINL 441

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +  VF+ + ++++  W++++ GF+M+G  +E + +F  +   ++KP+ ++FT++L AC  
Sbjct: 442 SQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GL DEG  +F  M   YG+ P ++HY+CMV++LGRAG L EA + I++MP  P + VWG
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWG 561

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL +C++  NV+LAE A   L  LEPEN G  VLLSNIYA  G W  V  +R  M   G
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           LKK PGCS I+V   ++  LAG+ SHP   +I  K+DEI   ++  G+ PN    L  VE
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVE 681

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E++ QEQ L  HSE+LA+ +GL++     P++++KNLR+CGDCH V K IS    REI +
Sbjct: 682 EQE-QEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFI 740

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF+ G CSC D+W
Sbjct: 741 RDTNRFHHFKDGICSCGDFW 760



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 208/446 (46%), Gaps = 51/446 (11%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           Q H ++L++G   D Y ++KL    +   ++    A  +   IP P +Y++++LI A + 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA--SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           +    QS  +F ++ ++    P+    P + K  A L  F+VG+ IH +   S  + D F
Sbjct: 94  AKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           +  S+ H Y  CG +  A  VF  +  KDVV+ ++++  + + G  E+ + +  EME   
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGR--WPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           ++ + V+   +LS         F R  +  EA+ +F ++       PD+ T  SVL +  
Sbjct: 213 IEANIVSWNGILSG--------FNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVG 263

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN--------------------- 332
               +++G  IH  + KQG+  +  + +++IDMY K G+                     
Sbjct: 264 DSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNA 323

Query: 333 ----------LDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
                     +DKALE+F   K +    +V  W+++IAG A  G   EAL+LF  MQ A 
Sbjct: 324 YITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           VKPN VT  ++L AC +   +  GR        V+ ++  V   + ++DM  + G ++ +
Sbjct: 384 VKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLS 442

Query: 439 VEFIEKMPIVPGASVWGALLGACKIH 464
                 MP       W +L+    +H
Sbjct: 443 QIVFNMMP-TKNLVCWNSLMNGFSMH 467


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/682 (34%), Positives = 357/682 (52%), Gaps = 79/682 (11%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           L+K C +++ L   + IHT     GL  D Y ++ L   +  C       L  A+ +F+ 
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCG-----HLYQAQTLFNS 167

Query: 98  IPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           I   +  +  WN +I A+S  A   Q+     Q+   +   PN  T   ++    +    
Sbjct: 168 ISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM-QQAGVTPNSSTLVSILPTIGQANAL 226

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+AIH   I++ F D++ +  +L+  YA C  L  A  +F  + KK+ V W++MI G+
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 216 VQGGFFEKAIELYREME-MENVKPDEVTMVAVLSACAKKRDLEFGR-------------- 260
           V       A+ LY +M  +  + P   T+  +L ACA+  DL+ G+              
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLD 346

Query: 261 --WPNEALSIFHELQLSKN--------VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
               N  +S++ +  +  N        +  D  ++ +++S C Q G  +  + I  +M+ 
Sbjct: 347 TTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQS 406

Query: 311 QGIKLNCYLTT-------------------------------------SLIDMYTKCGNL 333
            GI    YL T                                     ++IDMY+KCG +
Sbjct: 407 SGIAP--YLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKI 464

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             + E+F  +++RD+  W+TMI G+ ++G   EAL LF  +Q   +KP+ VT   VL AC
Sbjct: 465 TISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSAC 524

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SHSGLV EG+ +F+ M   + + P + HY CMVD+L RAG LDEA  FI++MP VP   +
Sbjct: 525 SHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRI 584

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           WGALL AC+ H+N+E+ E     +  L PE  G  VL+SNIY+  G+WD+ + +R   R 
Sbjct: 585 WGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRH 644

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            G KK PGCS +E++G IH F+ G  SHP    I  KL E++ ++K  GY  + S +L  
Sbjct: 645 HGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHD 704

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           VEEE+ +EQ L  HSE++AIA+G+++  PS  I + KNLR+C DCH+  K I+ L  REI
Sbjct: 705 VEEEE-KEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREI 763

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
            +RD  RFHHF+ G C+C D+W
Sbjct: 764 TVRDASRFHHFKDGICNCQDFW 785



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 219/527 (41%), Gaps = 100/527 (18%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ AR +FDQIP+P++  WN +IR Y+ S    QS  ++L ++      P  FTFPF++K
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHML-QLGVTPTNFTFPFLLK 115

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--KKDV 205
           A + L   ++G+ IH          DL++S +L+H YA CG L  A  +F  I    +D+
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+WN+MI+ F       + I    +M+   V P+  T+V++                   
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSI------------------- 216

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                                  L    Q  A+  G  IHA   +     N  L T+L+D
Sbjct: 217 -----------------------LPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLD 253

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAV 384
           MY KC  L  A ++F+TV  ++   WS MI G+ ++    +AL L+  M     + P   
Sbjct: 254 MYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPA 313

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   +L AC+    +  G+     M    G+         ++ M  + G++D AV F+++
Sbjct: 314 TLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDE 372

Query: 445 MPIVPGASVWGALLGAC-------------KIHENVELAEY---------ACSHLLELEP 482
           M I      + A++  C             +  ++  +A Y         ACSHL  L+ 
Sbjct: 373 M-IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQH 431

Query: 483 EN--HGALVL------------LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
               HG  V+            + ++Y+K GK     E+   M+   +        I  N
Sbjct: 432 GTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDI--------ISWN 483

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
                 + G   H LC E  S   E    L++ G  P+   L+ ++ 
Sbjct: 484 ----TMIIGYGIHGLCVEALSLFQE----LQALGLKPDDVTLIAVLS 522



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 46/284 (16%)

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           ++ +A  VF  I K  VV WN MI  +   G F+++I LY  M    V P   T   +L 
Sbjct: 56  EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLK 115

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
           AC+  + L+ GR                                           IH   
Sbjct: 116 ACSSLQALQLGRL------------------------------------------IHTHA 133

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGRE 366
              G+ ++ Y++T+L+ MY KCG+L +A  +F+++  + RD+  W+ MIA F+ +    +
Sbjct: 134 HILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQ 193

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
            +   ++MQ+A V PN+ T  ++L     +  + +G+         +     V   T ++
Sbjct: 194 TIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNF-FFDNVVLQTALL 252

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
           DM  +  LL  A +    +        W A++G   +H+++  A
Sbjct: 253 DMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGGYVLHDSISDA 295



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 2/145 (1%)

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T L   +     +  A  VF  +    V +W+ MI  +A  G  ++++ L+  M +  V 
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P   TF  +L ACS    +  GR+       + G+   +   T ++ M  + G L +A  
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAH-ILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 441 FIEKMPIVPGASV-WGALLGACKIH 464
               +       V W A++ A   H
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFH 188


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 348/622 (55%), Gaps = 72/622 (11%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR+ FD +P+ N+ +W  ++R Y       ++  +F Q+       P +    + +    
Sbjct: 97  ARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM-------PEKNVVSWTVMLGG 149

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L+Q R      G+      +D +  +N +I  Y   G LA A  +F  + +++V+SW +
Sbjct: 150 -LIQVRRIDEARGLFDIMPVKDVVARTN-MISGYCQEGRLAEARELFDEMPRRNVISWTT 207

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS---------------------- 248
           MISG+VQ G  + A +L+  M  +N    EV+  A+L                       
Sbjct: 208 MISGYVQNGQVDVARKLFEVMPEKN----EVSWTAMLMGYTQGGRIEEASELFDAMPVKA 263

Query: 249 --AC-------------AKKRDL-------EFGRWPN------------EALSIFHELQL 274
             AC             AK R +       + G W              EAL++F  +Q 
Sbjct: 264 VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQ- 322

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            + V  +  + +SVLS CA L ++D G Q+HA++ K     + ++ + LI MY KCG+L 
Sbjct: 323 REGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLV 382

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           KA ++F     +D+ +W+++I G+A +G   EAL +F  M  + +  + VTF  VL ACS
Sbjct: 383 KARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACS 442

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           ++G V EG   F  M+  Y V P  +HY CMVD+LGRAGL+++A++ I+KMP+   A +W
Sbjct: 443 YTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIW 502

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GALLGAC+ H N+ LAE A   LL+LEP+N G  +LLSNIYA  G+W +V+ELR++MRV 
Sbjct: 503 GALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVK 562

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESS-HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            + K PGCS IEV   +H F  G S+ HP    I   L+++   L+  GY P+ S +L  
Sbjct: 563 KVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHD 622

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           V+EE+ + ++L  HSERLA+A+GL+ V    PIR++KNLRVCGDCH+  KLI+K+  REI
Sbjct: 623 VDEEE-KVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREI 681

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           +LRD  RFHHF+ G CSC DYW
Sbjct: 682 ILRDANRFHHFKDGFCSCRDYW 703



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 154/344 (44%), Gaps = 47/344 (13%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL------VYN---SPY 135
              +E AR +FD++P   + +WN+++  Y  +  P ++  +F ++       +N   S Y
Sbjct: 29  IGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGY 88

Query: 136 FPN----EFTFPFVIKAAARLVQFRV---GQAIHGMVIKSSFEDDLFIS---NSLIHFYA 185
             N    E    F       +V +     G    G+V   S  + LF      +++ +  
Sbjct: 89  VKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLV---SEAETLFWQMPEKNVVSWTV 145

Query: 186 ICGDLAM------AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           + G L        A  +F ++  KDVV+  +MISG+ Q G   +A EL+ EM   NV   
Sbjct: 146 MLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNV--- 202

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
            ++   ++S   +   ++  R       +F E+   KN    E ++ ++L    Q G ++
Sbjct: 203 -ISWTTMISGYVQNGQVDVAR------KLF-EVMPEKN----EVSWTAMLMGYTQGGRIE 250

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
              ++   M  + + + C    ++I  + + G + KA +VF  ++ +D   WS MI  + 
Sbjct: 251 EASELFDAMPVKAV-VAC---NAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYE 306

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             G   EAL+LF+ MQ   V+ N  +  +VL  C+    +D GR
Sbjct: 307 RKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGR 350



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 140/322 (43%), Gaps = 32/322 (9%)

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
           NS I  YA  G +  A  VF  +  K +VSWNSM++G+ Q     +A  L+ +M   N  
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNT- 78

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
              V+   ++S   K R +      +EA   F  +   +NV     ++ +++    Q G 
Sbjct: 79  ---VSWNGLISGYVKNRMV------SEARKAFDTMP-ERNV----VSWTAMVRGYVQEGL 124

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           +     +  +M ++    N    T ++    +   +D+A  +F  +  +DV   + MI+G
Sbjct: 125 VSEAETLFWQMPEK----NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISG 180

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +   G   EA +LF  M     + N +++T ++     +G VD  R  F  M     V  
Sbjct: 181 YCQEGRLAEARELFDEMP----RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEV-- 234

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
               +T M+    + G ++EA E  + MP+    +    +LG     +N E+A+ A    
Sbjct: 235 ---SWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILG---FGQNGEVAK-ARQVF 287

Query: 478 LELEPENHGALVLLSNIYAKTG 499
            ++  ++ G    +  +Y + G
Sbjct: 288 DQIREKDDGTWSAMIKVYERKG 309


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 348/604 (57%), Gaps = 20/604 (3%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSS---LEYAREMFDQIPQPNLYTWNTLIRA 112
           ++H+Q+++ G     +  S L +   L  +     +  A ++FD++P  +  +W +++ A
Sbjct: 24  ELHSQIIKAG-----FDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTA 78

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           ++ +  P ++  +   +  +    P+ F F  +++A + L   R+G+ +H   + S F D
Sbjct: 79  HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCD 138

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D  + +SLI  Y  CG    A  VF  I  K+ VSW SMISG+ + G   +A++L+ +  
Sbjct: 139 DEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           + N+     +  A++S   +     +      + S+F+E++       D     SV+  C
Sbjct: 199 VRNL----FSWTALISGLIQSGHGIY------SFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A L  +++G QIH  +   G +   +++ +L+DMY KC ++  A ++F+ +  +DV  W+
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           ++I G A +G   EAL L+  M  +++KPN VTF  +L ACSH+GLV  GR  F  M   
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           Y + P ++HYTC++D+L R+G LDEA   ++K+P  P    W +LL AC  H N+E+   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
               +L+L+PE+    +LLSN+YA    W +VS++RK M    ++KEPG SSI+   +  
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQ 488

Query: 533 KFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
            F AGES  HP+  EI + L ++ A ++  GYVPN S +L  +E+++ +E+ L  HSERL
Sbjct: 489 VFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQE-KEKQLFWHSERL 547

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+AYGL+   P   IRIVKNLR+CGDCH V K IS +  REI++RD  R+HHF+ G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 652 MDYW 655
            D+W
Sbjct: 608 NDFW 611



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F+  L  CA+  +     ++H+++ K G   +  L+ +L+D+Y KCG + +AL++F  + 
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           +RD   W++++         R  L + + M     ++P+   F  ++ ACS  G +  G+
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGK 125

Query: 404 MFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
               + M   +     VK  + ++DM  + G  DEA
Sbjct: 126 QVHARFMLSXFCDDEVVK--SSLIDMYTKCGQPDEA 159


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 329/557 (59%), Gaps = 33/557 (5%)

Query: 34  HQHHPHPV--FSLIKQCKNIKQLKQIHTQMLRTGLFFDPY--SASKLFTPCALGTFSSLE 89
           H  +PH +   S ++ CK+IK LKQIH  +++T    D     +++L   CA        
Sbjct: 31  HDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 90

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSA-EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           YA  +  Q+  PNL  +N +IR  ++S  + I+  +++ Q++ +    P+ +T PFV+KA
Sbjct: 91  YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-SKGIVPDNYTIPFVLKA 149

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A     R G+ +HG  IK     D+++SN+L+  YA+C  +  A  VF    ++D+VSW
Sbjct: 150 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 209

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------- 260
            +MI G+V+ GF  + + LY  +   NV  D     A++    K  D  F R        
Sbjct: 210 TTMIQGYVKMGFAREGVGLYI-IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPV 268

Query: 261 -----WPN------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                W +            E+L +F ++Q    V PD+ T V+VL++CA LG +++G  
Sbjct: 269 KNVVSWNSMISGLAQKGQFKESLYMFRKMQ-RLGVKPDDVTLVAVLNSCANLGVLELGKW 327

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +HA + +  I+ + ++  +L+DMY KCG++D+A  VF  +  +DV+ ++ MI G AM+G 
Sbjct: 328 VHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQ 387

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           G +ALDLFS M +  ++P+ VTF  VL ACSH GLV+EGR +F  M  +Y + P ++HY 
Sbjct: 388 GGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYG 447

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMVD+LGRAGL++EA EFI  MPI P A V GALLGACKIH  VEL E     + ++EP 
Sbjct: 448 CMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPR 507

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
             GA VL+SNIY+   +W +  +LRK M+   L+K PGCSSIE++G IH+F  G+ SHP 
Sbjct: 508 KDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPK 567

Query: 544 CKEIYSKLDEIVARLKS 560
            KEIY  LDEI++ LK+
Sbjct: 568 IKEIYKLLDEIMSHLKN 584


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/681 (34%), Positives = 369/681 (54%), Gaps = 70/681 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  L++ C  ++ L   KQIH  ++R G   +    + + +  +    + LE AR +FD 
Sbjct: 235 IVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRN--NRLELARAVFDS 292

Query: 98  IPQPNLYTWNTLIRAY-----------------SSSAEP-----------------IQSF 123
               NL +WN++I +Y                 SSS +P                  ++ 
Sbjct: 293 TEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENV 352

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           +  ++ + ++ + P+  +    ++A   L  F +G+ IHG +++S  E D+++  SL+  
Sbjct: 353 LTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDM 412

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y     L  A  VF     K++ +WNS+ISG+   G F+ A +L  +M+ E +K D VT 
Sbjct: 413 YIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTW 472

Query: 244 VAV-----LSACAKK------RDLEFGRWPN------------------EALSIFHELQL 274
            ++     +S C+++      R    G  PN                  +AL  F ++Q 
Sbjct: 473 NSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQ- 531

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            +NV P+  T  ++L ACA    +  G +IH    K G   + Y+ T+LIDMY+K G L 
Sbjct: 532 EENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLK 591

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A EVF  +K + +  W+ M+ G+A+YG G E   LF  M +  ++P+A+TFT +L  C 
Sbjct: 592 VAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCK 651

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +SGLV +G  +F+ M+  Y + P ++HY+CMVD+LG+AG LDEA++FI  MP    AS+W
Sbjct: 652 NSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIW 711

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GA+L AC++H+++++AE A  +L  LEP N    VL+ NIY+   +W +V  L++ M   
Sbjct: 712 GAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAM 771

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+K     S I+V   IH F     SHP   EIY  L ++++ +K  GYVP+ + + Q +
Sbjct: 772 GVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNI 831

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           ++ + +E+ L  H+E+LA+ YGL+ ++   PIR+VKN R+C DCHT AK IS   NREI 
Sbjct: 832 DDSE-KEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIF 890

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHF  G CSC D W
Sbjct: 891 LRDGGRFHHFMNGECSCNDRW 911



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 119/568 (20%), Positives = 234/568 (41%), Gaps = 91/568 (16%)

Query: 11  TLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           T  T ++S P+  +P              P F  +   + +  ++++H QM++      P
Sbjct: 15  TSETQIVSSPQFSSPKF-----------SPFFHPLGGIRTLNSVRELHAQMIKM-----P 58

Query: 71  YSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF 126
              + +    ++      F   E A ++F      N   WN+ +  ++S        +  
Sbjct: 59  KKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEV 118

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
            + +++     +      V+K    L++  +G  +H  ++K  F+ D+ +S +LI+ Y  
Sbjct: 119 FKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEK 178

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           C  +  A  VF     ++   WN+++   ++   +E A+EL R M+  + K  + T+V +
Sbjct: 179 CLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKL 238

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           L AC K R                                          A++ G QIH 
Sbjct: 239 LQACGKLR------------------------------------------ALNEGKQIHG 256

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            + + G   N  +  S++ MY++   L+ A  VF + +  ++  W+++I+ +A+ GC   
Sbjct: 257 YVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNG 316

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV-VPGVKHYTCM 425
           A DLF  M+ + +KP+ +T+ ++L     SG + +G  + N +  +  +   G K  +C 
Sbjct: 317 AWDLFREMESSSIKPDIITWNSLL-----SGHLLQGS-YENVLTNIRSLQSAGFKPDSCS 370

Query: 426 VDM-------LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
           +         LG   L  E   +I +  +     V  +L+     ++ +E AE    H  
Sbjct: 371 ITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHH-- 428

Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
             + +N  A   L + Y   G +DN  +L   M+  G+K +    +  V+G     ++G 
Sbjct: 429 -TKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSG---YSMSGC 484

Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           S   L          ++ R+KS G  PN
Sbjct: 485 SEEALA---------VINRIKSLGLTPN 503


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 354/624 (56%), Gaps = 65/624 (10%)

Query: 44  LIKQCKNIK---QLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
           L+K C  +       Q+H  ++RTG   DPY+ S L   +  C+L       +AR++FD+
Sbjct: 60  LLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLH-----HHARKVFDE 114

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV------YNSPYFPNEFTFPFVIKAAAR 151
           +P P +  +N +I  YS +++P+ +  +F ++        +     N  T   ++   + 
Sbjct: 115 MPNPTI-CYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSV 173

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                +G  +HG  ++  F  DL ++NSL+  Y  CG++ +A  VF  +  +D+++WN+M
Sbjct: 174 ATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAM 233

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           ISG+ Q G     +E+Y                                          E
Sbjct: 234 ISGYAQNGHARCVLEVY-----------------------------------------SE 252

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
           ++LS  V+ D  T + V+SACA LGA  IG ++  +++++G   N +L  +L++MY +CG
Sbjct: 253 MKLS-GVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCG 311

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           NL +A EVF     + V  W+ +I G+ ++G G  AL+LF  M E+ V+P+   F +VL 
Sbjct: 312 NLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLS 371

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           ACSH+GL D G  +F +ME  YG+ PG +HY+C+VD+LGRAG L+EAV  I+ M + P  
Sbjct: 372 ACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDG 431

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           +VWGALLGACKIH+N E+AE A  H++ELEP N G  VLLSNIY      + VS +R  M
Sbjct: 432 AVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMM 491

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           R   L+K+PG S +E  G+++ F +G+ SHP  K+IY  LDE+ + +K   + PN     
Sbjct: 492 RERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEV-HPPNEK--C 548

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
           Q   EE +      +HSE+LAIA+ L++ +    I ++KNLRVC DCH   KL+SK+ NR
Sbjct: 549 QGRSEELL--IGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNR 606

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           + ++RD  RFHHFR G CSC DYW
Sbjct: 607 QFIVRDATRFHHFRDGICSCKDYW 630


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/613 (36%), Positives = 343/613 (55%), Gaps = 87/613 (14%)

Query: 127 LQLVYNSPYFPNEF-TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
           ++L+  SP    E  T+  V++  A L   + G+ IH ++  +  E D  + + L+  Y 
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV 147

Query: 186 ICGDL-------------------------------------------------AMAYCV 196
            CGDL                                                   A  +
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKL 207

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV---LSAC--- 250
           F  +G +DV+SWNSMISG+V  G  EK ++L+ +M +  +  D  TMV+V   L+ C   
Sbjct: 208 FDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLD 267

Query: 251 --AKKRDLE--------------------FGRWPNEALS-----IFHELQLSKNVNPDEF 283
             +K  +L                        +  E LS     +FHE++  +++ P+  
Sbjct: 268 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME-KEDLFPNSI 326

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T   +L ACA L A++ G +IH  + + G  L+ ++  +L+DMY KCG L  A  +F  +
Sbjct: 327 TMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 386

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             +D+  W+ MIAG+ M+G G EA+  F+ M+ + ++P+ V+F ++L ACSHSGL+DEG 
Sbjct: 387 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGW 446

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            FFN M     + P  +HY C+VD+L RAG L +A +FI+ MPI P A++WGALL  C+I
Sbjct: 447 GFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRI 506

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           + +V+LAE    H+ ELEPEN G  VLL+NIYA+  KW+ V +LR+ +   GL+K PGCS
Sbjct: 507 YHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCS 566

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ-EQ 582
            IE+ G++H F+ G+SSHPL  +I   L +   R+K  G+ P   +   L++ +D + E 
Sbjct: 567 WIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY--ALIKADDTEKEM 624

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           AL  HSE++A+A+G++S+ P + +R+ KNLRVCGDCH +AK +SK+  R+I+LRD  RFH
Sbjct: 625 ALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFH 684

Query: 643 HFRGGNCSCMDYW 655
           HF+ G+CSC  +W
Sbjct: 685 HFKDGSCSCRGHW 697



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 60  QMLRTGLFFD---PYSASKLFTPCALGTFS---SLEYAREMFDQIPQPNLYTWNTLIRAY 113
           QML  G+  D     S       C L  +S   +L  A ++F+ + + ++ +W ++I  Y
Sbjct: 241 QMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGY 300

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           +       S  +F ++      FPN  T   ++ A A L     GQ IHG ++++ F  D
Sbjct: 301 AREGLSDMSVRLFHEM-EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 359

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
             ++N+L+  Y  CG L +A  +F MI +KD+VSW  MI+G+   G+  +AI  + EM  
Sbjct: 360 RHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN 419

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             ++PDEV+ +++L AC+    L+      E    F+ ++ +  + P    +  ++   A
Sbjct: 420 SGIEPDEVSFISILYACSHSGLLD------EGWGFFNMMRNNCCIEPKSEHYACIVDLLA 473

Query: 294 QLGAM 298
           + G +
Sbjct: 474 RAGNL 478


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/499 (43%), Positives = 307/499 (61%), Gaps = 17/499 (3%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK--DVVSWNSMISGFVQGG 219
           HG  +K        ++N L+  Y   G L+ A  VF   G    D  SWN+M+SG+ + G
Sbjct: 139 HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCG 198

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             E A E++  M    +    V+  A++ AC +  +       +EAL +F ++ +     
Sbjct: 199 DLEAAREVFVRMPERGL----VSWSAMIDACIRAGEF------SEALRMFDQM-MGNGFR 247

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL---NCYLTTSLIDMYTKCGNLDKA 336
           PD     SVL ACA LGA++ G  +H  +K +G+     N  L T+L+DMY KCG +D+A
Sbjct: 248 PDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEA 307

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  V+S+DV +W+ MI G AM G G+ AL+LF RM +    PN  TF  VLCAC+H+
Sbjct: 308 WWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHT 367

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           G VDEG+  F  M   +G+ P  +HY C+ D+LGRAGLL+EA   +  MP+ P AS WGA
Sbjct: 368 GRVDEGKEIFRSMCD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGA 426

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           L+ +C +H NV + E     L+ELEP++ G  V+L N+YA  G W++   LRK M   G 
Sbjct: 427 LMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGA 486

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KKE G S IE NG +H+F +G++ HP  ++IY+ L+++  RL+  GYV + S +L  +++
Sbjct: 487 KKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDD 546

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E+ +   L+ HSERLA+A+G+++     PIRIVKNLRVC DCH  AKL+SKLY REI++R
Sbjct: 547 EEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMR 606

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           DR+RFH FRGG CSC D+W
Sbjct: 607 DRHRFHLFRGGVCSCNDFW 625



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 6/196 (3%)

Query: 68  FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
            D +S + + +    G    LE ARE+F ++P+  L +W+ +I A   + E  ++  +F 
Sbjct: 182 LDAFSWNTMVS--GYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFD 239

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF---EDDLFISNSLIHFY 184
           Q++ N  + P+      V+KA A L     G+ +H  +         D++ +  +L+  Y
Sbjct: 240 QMMGNG-FRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMY 298

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
             CG +  A+ VF  +  +DVV WN+MI G    G  ++A+EL+R M      P+E T V
Sbjct: 299 CKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFV 358

Query: 245 AVLSACAKKRDLEFGR 260
            VL AC     ++ G+
Sbjct: 359 VVLCACTHTGRVDEGK 374


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/600 (35%), Positives = 346/600 (57%), Gaps = 53/600 (8%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMF 95
           H   +   Q KN+   ++IH  +  +    D +   S   L+  C      S+  A ++F
Sbjct: 55  HAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCG-----SVVEAHKVF 109

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++   ++ +W +LI  Y+ +  P ++  +   ++    + PN FTF  ++KA       
Sbjct: 110 DKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGML-KGRFKPNGFTFASLLKAVGAYADS 168

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            +G  IH + +K  + +D+++ ++L+  YA CG + MA  VF  +  K+ VSWN++ISGF
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
                                              A+K D E       AL +F E+Q  
Sbjct: 229 -----------------------------------ARKGDGE------TALMVFAEMQ-R 246

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                  FT+ S+ SA A +GA++ G  +HA M K   KL  ++  +++DMY K G++  
Sbjct: 247 NGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMID 306

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF  V ++D+  W++M+  FA YG G+EA+  F  M+++ +  N ++F  +L ACSH
Sbjct: 307 ARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSH 366

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            GLV EG+ +F+ ++  Y + P ++HY  +VD+LGRAGLL+ A+ FI KMP+ P A+VWG
Sbjct: 367 GGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWG 425

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALL AC++H+N ++ ++A  H+ +L+P++ G  VLL NIYA TG WD  + +RK M+ +G
Sbjct: 426 ALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATG 485

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KKEP CS +E+   +H F+A + +HP  +EIY   DEI  +++  GYVP+  ++L  V+
Sbjct: 486 VKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVD 545

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           E++ +E  L  HSE++A+A+ LI +     IRI+KN+R+CGDCH+  K ISK++ REI++
Sbjct: 546 EQE-REANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVI 604



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 149/345 (43%), Gaps = 47/345 (13%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P    +   I A A+       + IH  +  S F  D F+ NSLIH Y  CG +  A+ V
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  +  KD+VSW S+I+G+ Q     +AI L   M     KP+  T  ++L A       
Sbjct: 109 FDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA------- 161

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                                           + A A  G   IG QIHA   K     +
Sbjct: 162 --------------------------------VGAYADSG---IGGQIHALAVKCDWHED 186

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
            Y+ ++L+DMY +CG +D A  VF  + S++   W+ +I+GFA  G G  AL +F+ MQ 
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
              +    T++++  A +  G +++G+     M      +      T M+DM  ++G + 
Sbjct: 247 NGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNT-MLDMYAKSGSMI 305

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           +A +  E++ +      W ++L A        L + A SH  E+ 
Sbjct: 306 DARKVFERV-LNKDLVTWNSMLTA---FAQYGLGKEAVSHFEEMR 346



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 8/187 (4%)

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  + P    + + ++ACAQ   +D   +IHA +       + +L  SLI +Y KCG++ 
Sbjct: 44  SGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVV 103

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC- 393
           +A +VF  ++++D+  W+++IAG+A      EA+ L   M + + KPN  TF ++L A  
Sbjct: 104 EAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVG 163

Query: 394 --SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
             + SG+  +      + +    V  G    + ++DM  R G +D A    +K+    G 
Sbjct: 164 AYADSGIGGQIHALAVKCDWHEDVYVG----SALLDMYARCGKMDMATAVFDKLDSKNGV 219

Query: 452 SVWGALL 458
           S W AL+
Sbjct: 220 S-WNALI 225


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/472 (44%), Positives = 284/472 (60%), Gaps = 55/472 (11%)

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           +F  I + ++  WN+MI G V    F+ AIE Y  M                        
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR----------------------- 104

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ---- 311
                              S+   P+ FTF  VL ACA+L  + +GV+IH  + K+    
Sbjct: 105 -------------------SEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHK 145

Query: 312 -----GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
                G+  N ++ TSL+DMY KCGN++KA  VF  +  +D+  W  MI G+A+ G  +E
Sbjct: 146 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE 205

Query: 367 ALDLFSRMQEAK---VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           A+DLF +MQ      +KP+  TF  +LC C+H+GLVDEGR +FN M   + + P ++HY 
Sbjct: 206 AIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYG 265

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMVD+LGRAGLLDEA + I  MP+   A VWGALLGAC+IH + +LAE A   L+ELEP 
Sbjct: 266 CMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPW 325

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
           N G  VLLSNIY+   KWD  +++R  M    ++K PGCS IEV+G +H+FL G+  HPL
Sbjct: 326 NSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPL 385

Query: 544 CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPS 603
            ++IY+KLDE+  ++K  GYVP    +L  +EEE+ +E  L  HSE+LAIA+GLIS  P+
Sbjct: 386 SEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEE-KEHFLGCHSEKLAIAFGLISATPT 444

Query: 604 QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             IR+VKNLRVCGDCH   KLIS +  REI +RD  RFH FR G+CSC DYW
Sbjct: 445 AVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 15/210 (7%)

Query: 63  RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
           R GL  D Y  + +   C+   FS   Y R +F QI QPN++ WNT+IR   S+ +    
Sbjct: 39  RFGLCHDNYLLNMILR-CSF-DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSN-DCFDD 95

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED---------D 173
            + F  L+ +  + PN FTFPFV+KA ARL+  ++G  IH +V+K              +
Sbjct: 96  AIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRN 155

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +F+  SL+  YA CG++  A  VF  + +KD+VSW +MI G+   G  ++AI+L+ +M+ 
Sbjct: 156 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 215

Query: 234 EN---VKPDEVTMVAVLSACAKKRDLEFGR 260
           EN   +KPD  T + +L  C     ++ GR
Sbjct: 216 ENKLGIKPDGNTFIGLLCGCTHAGLVDEGR 245



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 22/177 (12%)

Query: 323 LIDMYTKCG----NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L++M  +C     + +    +FH +K  ++F+W+TMI G     C  +A++ +  M+   
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 379 VKPNAVTFTNVLCACS-----------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
             PN  TF  VL AC+           H+ +V E   + ++     G+V  V   T +VD
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKE---WIHKCIMEMGMVRNVFVGTSLVD 164

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           M  + G +++A    + MP     S WGA++    ++    L + A    L+++ EN
Sbjct: 165 MYAKCGNMEKARSVFDGMPEKDIVS-WGAMIQGYALN---GLPKEAIDLFLQMQREN 217


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 361/627 (57%), Gaps = 30/627 (4%)

Query: 44  LIKQCKN---IKQLKQIHTQMLRTGLFFDP--YSASKLFTPCALGTFSSLEYAREMFDQI 98
           L++ C +   ++  K++H  +  +GL   P  Y ++ LF   A  +   +  A+++FD+I
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYA--SSGEMVTAQKLFDEI 69

Query: 99  P--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           P  + +   W TL+ ++S     + S  +F+++        ++ +   +    A+L    
Sbjct: 70  PLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEI-DDVSVVCLFGVCAKLEDLG 128

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
             Q  HG+ +K      + + N+L+  Y  CG ++    +F  + +K VVSW  ++   V
Sbjct: 129 FAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVV 188

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           +    E+  E++ EM   N     V +   L A           +  E L +  E+    
Sbjct: 189 KWEGLERGREVFHEMPERNAVAWTVMVAGYLGA----------GFTREVLELLAEMVFRC 238

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-------NCYLTTSLIDMYTK 329
               +  T  S+LSACAQ G + +G  +H    K+ + +       +  + T+L+DMY K
Sbjct: 239 GHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAK 298

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CGN+D ++ VF  ++ R+V  W+ + +G AM+G GR  +D+F +M   +VKP+ +TFT V
Sbjct: 299 CGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAV 357

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSG+VDEG   F+ +   YG+ P V HY CMVD+LGRAGL++EA   + +MP+ P
Sbjct: 358 LSACSHSGIVDEGWRCFHSLR-FYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPP 416

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              V G+LLG+C +H  VE+AE     L+++ P N    +L+SN+Y   G+ D    LR 
Sbjct: 417 NEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRG 476

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            +R  G++K PG SSI VN  +H+F +G+ SHP  KEIY KL+E++ R++S GYVP+ S 
Sbjct: 477 SLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSG 536

Query: 570 LLQLVEEE-DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
           L+   E + + +EQAL  HSE+LA+ +GL+  +PS P+ + KNLR+C DCH+  K++SK+
Sbjct: 537 LVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKV 596

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           Y+REI++RDR RFH F+GG+CSC DYW
Sbjct: 597 YDREIIIRDRNRFHQFKGGSCSCSDYW 623


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 331/606 (54%), Gaps = 54/606 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           KQIH   L+ G+ +D +     F   C  G       A  MFD++PQ NL TWN  I   
Sbjct: 128 KQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGD---ACNMFDEMPQRNLATWNAYISNA 184

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
                 + + + F + +      PN  TF   + A   +V+  +G+ +H  +++  +++D
Sbjct: 185 VQDRRSLDAIVAFKEFLCVHGE-PNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKED 243

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           + ++N LI FY  CGD+  A  VF  IG +K+VVSW SM++  VQ    E+A  ++    
Sbjct: 244 VSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF---- 299

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                                  LQ  K V P +F   SVLSAC
Sbjct: 300 ---------------------------------------LQARKEVEPTDFMISSVLSAC 320

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A+LG +++G  +HA   K  ++ N ++ ++L+DMY KCG+++ A +VF  +  R++  W+
Sbjct: 321 AELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWN 380

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
            MI G+A  G    AL LF  M      ++P+ VT  ++L  CS  G V+ G   F  M 
Sbjct: 381 AMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMR 440

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             YG+ PG +H+ C+VD+LGR+GL+D A EFI+ M I P  SVWGALLGAC++H   EL 
Sbjct: 441 LNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELG 500

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           + A   L EL+  + G  V+LSN+ A  G+W+  + +RK M+  G+KK  G S I V   
Sbjct: 501 KIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNR 560

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS-HLLQLVEEEDVQEQALNLHSE 589
           IH F A +SSH    EI + L ++   +K  GYVP+ +  L  L +EE   E  +  HSE
Sbjct: 561 IHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASE--VWYHSE 618

Query: 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNC 649
           ++A+A+GLI++    PIRI KNLR+CGDCH+  K IS++  REI++RD +RFH F+ G C
Sbjct: 619 KIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCC 678

Query: 650 SCMDYW 655
           SC DYW
Sbjct: 679 SCKDYW 684



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 175/417 (41%), Gaps = 48/417 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           + IH  ++RT +   P   S             L  A+ +        + TW +LI    
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVN-MYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCV 84

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +   + + + F  +  ++   PN+FTFP V KA+A +     G+ IHG+ +K     D+
Sbjct: 85  HNRRFLPALLHFTNMRRDNVQ-PNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDV 143

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+  S    Y   G    A  +F  + ++++ +WN+ IS  VQ      AI  ++E    
Sbjct: 144 FVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCV 203

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
           + +P+ +T  A L+AC     L  GR                                  
Sbjct: 204 HGEPNSITFCAFLNACVDMVRLNLGR---------------------------------- 229

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWST 353
                   Q+HA + + G K +  +   LID Y KCG++  A  VF+ + +R +V  W +
Sbjct: 230 --------QLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCS 281

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           M+A          A  +F + ++ +V+P     ++VL AC+  G ++ GR   + +    
Sbjct: 282 MLAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRS-VHALAVKA 339

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            V   +   + +VDM G+ G ++ A +   ++P       W A++G      ++++A
Sbjct: 340 CVEDNIFVGSALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMA 395



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 127/333 (38%), Gaps = 57/333 (17%)

Query: 157 VGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           +G+ IH  +I++       F+SN L++ Y+    L  A  V  +   + VV+W S+ISG 
Sbjct: 24  LGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGC 83

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V    F  A+  +  M                     +RD                    
Sbjct: 84  VHNRRFLPALLHFTNM---------------------RRD-------------------- 102

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            NV P++FTF  V  A A +     G QIH    K G+  + ++  S  DMY K G    
Sbjct: 103 -NVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGD 161

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  +F  +  R++  W+  I+         +A+  F        +PN++TF   L AC  
Sbjct: 162 ACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC-- 219

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEAVEFIEKMPIVPGA 451
              VD  R+   +    + V  G K        ++D  G+ G +  A     ++      
Sbjct: 220 ---VDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNV 276

Query: 452 SVWGALLGA-CKIHENVELAEYACSHLLELEPE 483
             W ++L A  + HE     E AC   L+   E
Sbjct: 277 VSWCSMLAALVQNHEE----ERACMVFLQARKE 305



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 9/174 (5%)

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDK 335
           N++P      S+L +        +G  IHA + +  +  L  +L+  L++MY+K   L+ 
Sbjct: 2   NIHPQNL-LGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNS 60

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  V      R V  W+++I+G         AL  F+ M+   V+PN  TF  V  A + 
Sbjct: 61  AQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAF 120

Query: 396 SGLVDEGRMFFN---QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             +   G+       +   +Y V  G   +    DM  + G   +A    ++MP
Sbjct: 121 VQIPMTGKQIHGLALKGGMIYDVFVGCSCF----DMYCKTGFRGDACNMFDEMP 170


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 320/567 (56%), Gaps = 55/567 (9%)

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQF 155
            +P P     N  +R  ++S  P +S ++    +  +    P+  +  F +KA+AR    
Sbjct: 61  SLPTPATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDA 120

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
                +H +V++     D+ +  +L+  YA CGDLA A  VF  +  +DV +WNS+++G 
Sbjct: 121 HTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGL 180

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL--- 272
            QG                                           PN AL++FH L   
Sbjct: 181 AQG-----------------------------------------TEPNLALALFHRLANS 199

Query: 273 --QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
             +L     P+E T V+ LSACAQ+G +  G+ +H   K+ G+  N  +  SLIDMY+KC
Sbjct: 200 FQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKC 259

Query: 331 GNLDKALEVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           G+L +AL+VFH++K  D  +  ++  I   +M+G G +AL LF  M   +++P+ VT+  
Sbjct: 260 GSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEPDGVTYLA 318

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VLC C+HSGLVD+G   FN M     V P +KHY  +VD+LGRAG L EA + +  MP  
Sbjct: 319 VLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP 374

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
               +W  LLGA K+H  VELAE A + L EL     G  VLLSN+YA   +W +V  +R
Sbjct: 375 ADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVR 434

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
             MR + ++K PG S  E++G +HKF+ G+  HP  +EIY  L++IV+R+   GY P  S
Sbjct: 435 DTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETS 494

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
           ++L  + EE+ ++ AL  HSE+LAIA+GLI+  P + +R++KNLR+CGDCH VAKLISK 
Sbjct: 495 NVLHDIGEEE-KQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKA 553

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           Y R I++RDR RFH F  G CSC DYW
Sbjct: 554 YGRVIVIRDRARFHRFEDGQCSCRDYW 580


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/656 (35%), Positives = 357/656 (54%), Gaps = 68/656 (10%)

Query: 61  MLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           +L+TG +      + +   CAL         L  A+ +FD + +     W  LI  Y  +
Sbjct: 170 VLKTGFW-----GTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQA 224

Query: 117 AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176
               +   +FL ++ +  + P+ ++   +I A   L   R+GQ +H + ++     D  +
Sbjct: 225 GCASKVVELFLHML-DDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCV 283

Query: 177 SNSLIHFYA---ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI-ELYREME 232
           S  L+  YA   +   +  A  VF  + + +V+SW ++ISG+VQ G  E  +  L+REM 
Sbjct: 284 SCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREML 343

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRW----------------PNEALSIFHE----- 271
            E+++P+ +T   +L ACA   D + GR                  N  +S++ E     
Sbjct: 344 NESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCME 403

Query: 272 --------------LQLSKNVNPDE------------------FTFVSVLSACAQLGAMD 299
                         L +S +V  +                   FTF S+LSA A +G + 
Sbjct: 404 EARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLT 463

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            G ++HA   K G + +  ++ SL+ MY +CG L+ A   F  +K  +V  W+++I+G A
Sbjct: 464 KGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLA 523

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
            +G  ++AL +F  M  A VKPN VT+  VL ACSH GLV EG+  F  M+  +G++P +
Sbjct: 524 KHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRM 583

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY C+VD+L R+GL++EA +FI +MP    A VW  LL AC+ + N E+ E A +H++ 
Sbjct: 584 EHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVIN 643

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           LEP +    VLLSN+YA  G WD V+ +R  MR   L KE G S ++V   IH+F AG++
Sbjct: 644 LEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDT 703

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           SHPL  +IY+KL  ++  +K  GYVP+ S +L  + EE ++EQ L  HSE++A+A+GLI+
Sbjct: 704 SHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEE-LKEQYLLQHSEKIAVAFGLIT 762

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              ++P+RI KNLRVC DCH+  K ISK   REI+LRD  RFH  + G CSC +YW
Sbjct: 763 TSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 194/438 (44%), Gaps = 64/438 (14%)

Query: 22  HPNPTT--LTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLF-FDPYSASKLFT 78
           H NP T  L +++ H      + +   +  +++  + +H ++LR+ +   D   A+ L T
Sbjct: 25  HLNPLTAHLVLSSDHSCDAAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLT 84

Query: 79  PCALGTFSSLEYAREMFDQI-PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP 137
                   ++E AR +FDQ+    +L +W  +    + +    +S  +  +++      P
Sbjct: 85  --MYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLR-P 141

Query: 138 NEFTFPFVIKAAARLVQFRV-GQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYC 195
           N FT     +A      FR+ G  + G V+K+ F   D+ +  +LI  +A  GDL  A  
Sbjct: 142 NAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQR 201

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  + ++  V W  +I+ +VQ G   K +EL+  M  +  +PD  +M +++SAC     
Sbjct: 202 VFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISAC----- 256

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                                                 +LG++ +G Q+H+   + G+  
Sbjct: 257 -------------------------------------TELGSVRLGQQLHSVALRLGLVS 279

Query: 316 NCYLTTSLIDMYTKCG---NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR-EALDLF 371
           +  ++  L+DMY K     +++ A +VF T+   +V  W+ +I+G+   G      + LF
Sbjct: 280 DSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALF 339

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY----TCMVD 427
             M    ++PN +T++N+L AC++    D GR     +     +   + H       +V 
Sbjct: 340 REMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHV-----LKTSIAHVNVVGNALVS 394

Query: 428 MLGRAGLLDEAVEFIEKM 445
           M   +G ++EA +  +++
Sbjct: 395 MYAESGCMEEARKAFDQL 412



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 19/220 (8%)

Query: 39  HPVFS-LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           H  +S L+K C N+      +QIH  +L+T +       + L +  A      +E AR+ 
Sbjct: 351 HITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYA--ESGCMEEARKA 408

Query: 95  FDQIPQPNLYTWNTLI---RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           FDQ+ + N+ + +  +   R  +S +  I+                + FTF  ++ AAA 
Sbjct: 409 FDQLYETNILSMSPDVETERNNASCSSKIEGM----------DDGVSTFTFASLLSAAAS 458

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
           +     GQ +H + +K+ F  D  ISNSL+  YA CG L  A   F  +   +V+SW S+
Sbjct: 459 VGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSI 518

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           ISG  + G+ ++A+ ++ +M +  VKP++VT +AVLSAC+
Sbjct: 519 ISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACS 558


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/569 (39%), Positives = 332/569 (58%), Gaps = 21/569 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FD+IP P++ ++NTL+  + +S +   +  +F  +        N         
Sbjct: 65  LADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKS 124

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVV 206
            A    +         M +++S        N+++  +A  GD++ A   F     K+D V
Sbjct: 125 GAVEEAKV----VFLAMPVRNSVS-----WNAMVSGFACSGDMSTAEEWFRNAPEKEDAV 175

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            W +M+SG++  G   KAI+ +  M + N+    V+  AV++   K          ++AL
Sbjct: 176 LWTAMVSGYMDIGNVVKAIKYFEAMPVRNL----VSWNAVVAGYVKNSH------ADDAL 225

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            +F  +    NV P+  T  SVL  C+ L A+  G QIH    K  +  N  + TSL+ M
Sbjct: 226 RLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSM 285

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y KCG+L  A  +F  + +RDV  W+ MI+G+A +G G+EA++LF RM++  V+PN +TF
Sbjct: 286 YCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 345

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             VL AC H+GL D G   F  M+ +YG+ P V HY+CMVD+L RAG L+ AV+FI  MP
Sbjct: 346 VVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P  S +G LL AC++++N+E AE A   L+E +P++ GA V L+NIYA   +WD+VS 
Sbjct: 406 FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSR 465

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R+ M+ + + K PG S IE+ G +H+F + +  HP    I+ KL ++  R+K  GYVP+
Sbjct: 466 VRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPD 525

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
              +L  V+E  ++ Q L  HSE+LAIA+GLIS      +RI KNLRVCGDCH  AK+IS
Sbjct: 526 LDFVLHDVDET-MKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVIS 584

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            + +REI+LRD  RFHHFRGG+CSC DYW
Sbjct: 585 MIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 20/220 (9%)

Query: 178 NSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           N L+  YA   G LA A  +F  I   DVVS+N+++      G  + A  L+  M + +V
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDV 111

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
                TMV+ LS   K   +E      EA  +F  + +  +V     ++ +++S  A  G
Sbjct: 112 ASWN-TMVSGLS---KSGAVE------EAKVVFLAMPVRNSV-----SWNAMVSGFACSG 156

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            M    +     +    K +  L T+++  Y   GN+ KA++ F  +  R++  W+ ++A
Sbjct: 157 DMSTAEEW---FRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVA 213

Query: 357 GFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSH 395
           G+       +AL LF  M +EA V+PNA T ++VL  CS+
Sbjct: 214 GYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 13/155 (8%)

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR--EALDLFSRMQE 376
           L+T+ +    + G+L  A E F +   +    ++ ++AG+A    GR  +A  LF R+  
Sbjct: 19  LSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYAR-APGRLADARHLFDRIP- 76

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
               P+ V++  +L     SG  D  R  F  M      V  V  +  MV  L ++G ++
Sbjct: 77  ---TPDVVSYNTLLLCHFASGDADGARRLFASMP-----VRDVASWNTMVSGLSKSGAVE 128

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
           EA      MP+    S W A++       ++  AE
Sbjct: 129 EAKVVFLAMPVRNSVS-WNAMVSGFACSGDMSTAE 162


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 337/570 (59%), Gaps = 21/570 (3%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FD+IP+P+  ++NTL+  + ++ +   +  +F  +   +    N  ++  ++ 
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATA---RNVTSWNTMLS 123

Query: 148 AAARLVQFRVGQAIH-GMVIKSSFEDDLFISNSLIHFYAICGDLAMA-YCVFVMIGKKDV 205
             +R       +A+   M  ++S        N+++  +A  GD+  A  C      K++ 
Sbjct: 124 GLSRSGAVGEARAVFLAMPARNSIS-----WNAMVSCFAHAGDMCAAEECFEDAPDKENA 178

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V W +M+SG++  G  EKA++ +  M + ++    V+  AV++   K    E      +A
Sbjct: 179 VLWTAMVSGYMDSGHVEKAMQFFEAMPVRSL----VSWNAVVAGYVKNSRAE------DA 228

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L +F  +    +V P+E T  SVL  C+ L A+  G Q+H    K  +       TSL+ 
Sbjct: 229 LWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVS 288

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG+LD A ++F  ++ RDV  W+ MI+G+A +G GREA++LF +M+   V+PN +T
Sbjct: 289 MYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWIT 348

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL AC H+G+ D G   F +M+ VYG+   V HY+CMVD+L RAG L+ AV  I  M
Sbjct: 349 FVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM 408

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P  S +G LL A ++++N+E AE+A   L+E  P+N GA V L+NIYA   +W +VS
Sbjct: 409 PFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVS 468

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R+ M+ + + K PG S +E+NG IH F + +  HP    I+ +L ++  R+K+ GYVP
Sbjct: 469 RVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVP 528

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           +    L  V+E  ++ Q L  HSE+LAIA+GL+S  P   +RI KNLRVCGDCHT AKLI
Sbjct: 529 DLDFALHDVDES-LKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLI 587

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK+ +REI+LRD  RFHHFR G+CSC DYW
Sbjct: 588 SKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 2/186 (1%)

Query: 76  LFTPCALGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133
           L+T    G   S  +E A + F+ +P  +L +WN ++  Y  ++    +  +F  +V ++
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDA 239

Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
              PNE T   V+   + L     G+ +H    K      +    SL+  Y  CGDL  A
Sbjct: 240 DVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGA 299

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             +F  +  +DV++WN+MISG+   G   +AIEL+ +M+ + V+P+ +T VAVL+AC   
Sbjct: 300 CKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHT 359

Query: 254 RDLEFG 259
              +FG
Sbjct: 360 GMCDFG 365


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 348/604 (57%), Gaps = 20/604 (3%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSS---LEYAREMFDQIPQPNLYTWNTLIRA 112
           ++H+Q+++ G     +  S L +   L  +     +  A ++FD++P  +  +W +++ A
Sbjct: 24  ELHSQIIKAG-----FDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTA 78

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           ++ +  P ++  +   +  +    P+ F F  +++A + L   R+G+ +H   + S F D
Sbjct: 79  HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCD 138

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D  + +SLI  Y  CG    A  VF  I  K+ VSW SMISG+ + G   +A++L+ +  
Sbjct: 139 DEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
           + N+     +  A++S   +     +      + S+F+E++       D     SV+  C
Sbjct: 199 VRNL----FSWTALISGLIQSGHGIY------SFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A L  +++G QIH  +   G +   +++ +L+DMY KC ++  A ++F+ +  +DV  W+
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           ++I G A +G   EAL L+  M  +++KPN VTF  +L ACSH+GLV  GR  F  M   
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           Y + P ++HYTC++D+L R+G LDEA   ++K+P  P    W +LL AC  H N+E+   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
               +L+L+PE+    +LLSN+YA    W +VS++RK M    ++KEPG SSI+   +  
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQ 488

Query: 533 KFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
            F AGES  HP+  EI + L ++ A ++  GYVPN S +L  +E+++ +E+ L  HSERL
Sbjct: 489 VFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQE-KEKQLFWHSERL 547

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+AYGL+   P   IRIVKNLR+CGDCH V K IS +  REI++RD  R+HHF+ G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 652 MDYW 655
            D+W
Sbjct: 608 NDFW 611



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 47/270 (17%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F   ++  AR         +H  +IK+ F+    +SN+L+  Y  CG +  A  +F  + 
Sbjct: 6   FLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMP 65

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            +D VSW S+++   +     + + +   M   + ++PD      ++ AC          
Sbjct: 66  NRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRAC---------- 115

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                                           + LG + +G Q+HA+        +  + 
Sbjct: 116 --------------------------------SSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           +SLIDMYTKCG  D A  VF ++  ++   W++MI+G+A  G   EA+DLF    +A V+
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLF---LQAPVR 200

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
            N  ++T ++     SG        FN+M 
Sbjct: 201 -NLFSWTALISGLIQSGHGIYSFSLFNEMR 229


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 327/601 (54%), Gaps = 46/601 (7%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +QIH  M++     D Y    L    A   +  L+ AR++F+ IP+ +L  WN LI   S
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYA--KYGLLDDARKVFEWIPRKDLLLWNALISGCS 382

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
                 +S  +F ++        N  T   V+K+ A L        +H +  K  F  D 
Sbjct: 383 HGGCHGESLSLFCRMRKEGSDI-NRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDS 441

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            + N LI  Y  C  L  A  VF      +++++ SMI+   Q    E AI+L+  MEM 
Sbjct: 442 HVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLF--MEM- 498

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
                                                  L K + PD F   S+L+ACA 
Sbjct: 499 ---------------------------------------LRKGLEPDPFVLSSLLNACAS 519

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L A + G Q+HA + K+    + +   +L+  Y KCG+++ A   F  +  + V  WS M
Sbjct: 520 LSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM 579

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I G A +G G+ ALD+F RM + ++ PN +T T+VLCAC+H+GLVDE + +F+ M+ ++G
Sbjct: 580 IGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFG 639

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           +    +HY+CM+D+LGRAG LD+A+E +  MP    A+VWGALL A ++H + EL + A 
Sbjct: 640 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAA 699

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             L  LEPE  G  VLL+N YA  G WD V+++RK M+ S +KKEP  S +E+   +H F
Sbjct: 700 EKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTF 759

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           + G+ SHP  ++IY+KL+E+   +   GYVPN    L  V++ + +E  L+ HSERLA+A
Sbjct: 760 IVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSE-KELLLSHHSERLAVA 818

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           + LIS     PIR+ KNLR+C DCH   K ISK+ +REI++RD  RFHHF  G CSC DY
Sbjct: 819 FALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDY 878

Query: 655 W 655
           W
Sbjct: 879 W 879



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 188/416 (45%), Gaps = 69/416 (16%)

Query: 56  QIHTQMLRTGLF--FDPYSASKLFTPCAL-GTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
            IH  +L++GL   F  +  S  ++ C L G+      AR +FD+ P P   +W++L+ A
Sbjct: 25  HIHAHLLKSGLLHAFRNHLLS-FYSKCRLPGS------ARRVFDETPDPCHVSWSSLVTA 77

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           YS++A P ++   F + +       NEF  P V+K A       +G  +H + + +    
Sbjct: 78  YSNNALPREALAAF-RAMRARGVRCNEFALPIVLKCAP---DAGLGVQVHAVAVSTGLSG 133

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAIELYREM 231
           D+F++N+L+  Y   G +  A  VF    + ++ VSWN M+S FV+      A+EL+ EM
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
               V+P+E     V++AC   RDLE GR                               
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGR------------------------------- 222

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
                      ++HA + + G   + +   +L+DMY+K G++  A  VF  V   DV  W
Sbjct: 223 -----------KVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSW 271

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +  I+G  ++G  + AL+L  +M+ + + PN  T +++L           G   F     
Sbjct: 272 NAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL-----KACAGAGAGAFALGRQ 326

Query: 412 VYGVV----PGVKHY--TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
           ++G +         Y    +VDM  + GLLD+A +  E +P      +W AL+  C
Sbjct: 327 IHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGC 381



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 207/474 (43%), Gaps = 73/474 (15%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP-NLYTWNTLIRAYS 114
           Q+H   + TGL  D + A+ L      G F  ++ AR +FD+  +  N  +WN ++ A+ 
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVA--MYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            +     +  +F ++V+ S   PNEF F  V+ A         G+ +H MV+++ ++ D+
Sbjct: 179 KNDRCSDAVELFGEMVW-SGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F +N+L+  Y+  GD+ MA  VF  + K DVVSWN+ ISG V  G  + A+EL  +M+  
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 235 NVKPDEVTMVAVL----------------------SACAKKRD---------------LE 257
            + P+  T+ ++L                       ACA   D               L+
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 258 FGR----W-PNEALSIFHEL-------------------QLSKNVNPDEFTFVSVLSACA 293
             R    W P + L +++ L                      +  + +  T  +VL + A
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L A+    Q+HA  +K G   + ++   LID Y KC  L  A +VF    S ++  +++
Sbjct: 418 SLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTS 477

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM---E 410
           MI   +    G +A+ LF  M    ++P+    +++L AC+     ++G+     +   +
Sbjct: 478 MITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            +  V  G      +V    + G +++A      +P   G   W A++G    H
Sbjct: 538 FMTDVFAG----NALVYTYAKCGSIEDADLAFSGLPD-KGVVSWSAMIGGLAQH 586



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 3/200 (1%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           I    Q+H    + G   D +  + L    +    + L YA ++F++    N+  + ++I
Sbjct: 422 ISDTTQVHALAEKIGFLSDSHVVNGLID--SYWKCNCLRYANKVFEEHSSDNIIAFTSMI 479

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            A S       +  +F++++      P+ F    ++ A A L  +  G+ +H  +IK  F
Sbjct: 480 TALSQCDHGEDAIKLFMEMLRKG-LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKF 538

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
             D+F  N+L++ YA CG +  A   F  +  K VVSW++MI G  Q G  ++A++++R 
Sbjct: 539 MTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRR 598

Query: 231 MEMENVKPDEVTMVAVLSAC 250
           M  E + P+ +T+ +VL AC
Sbjct: 599 MVDERIAPNHITLTSVLCAC 618


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/605 (36%), Positives = 331/605 (54%), Gaps = 46/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +  LK++H   L+    +D   A+      A     SL YA+ +F  I    L +WN LI
Sbjct: 395 LPSLKELHCYSLKQEFVYDELLANAFVASYA--KCGSLSYAQRVFHGIRSKTLNSWNALI 452

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             Y+ S++P  S    LQ+  NS   P+ FT   ++ A ++L   R+G+ +HG +I++  
Sbjct: 453 GGYAQSSDPRLSLDAHLQM-KNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 511

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E DLF+  S++  Y  CG+L     +F  +    +VSWN++I+G +Q GF          
Sbjct: 512 ERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGF---------- 561

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                          P  AL +F ++ L   + P   + ++V  
Sbjct: 562 -------------------------------PERALGLFRQMVL-YGIQPCGISMMTVFG 589

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC+ L ++ +G + HA   K  ++ N ++  S+IDMY K G + ++ +VF+ +K +    
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ MI G+ M+G  +EA+ LF  MQ     P+ +TF  VL AC+HSGL+ EG  + +QM+
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK 709

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
             +G+ P +KHY C++DMLGRAG LD A+    +M   P   +W +LL  C+IH+N+E+ 
Sbjct: 710 SSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMG 769

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E   + L  LEPE     VLLSN+YA  GKWD+V ++R+ M+   L+K+ GCS IE+NG+
Sbjct: 770 EKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGK 829

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +  F+ GE      +EI S    +  ++   GY P+ S +   + EE+  EQ L  HSE+
Sbjct: 830 VFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQ-LRGHSEK 888

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAI YGLI       +R+ KNLR+C DCH  AKLISK+  REI++RD  RFHHF  G CS
Sbjct: 889 LAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCS 948

Query: 651 CMDYW 655
           C DYW
Sbjct: 949 CGDYW 953



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 191/435 (43%), Gaps = 87/435 (20%)

Query: 33  GHQHHPHPVFSLIKQC-----------KNIKQLKQIHTQML-RTGLFFDPYSASKLFTPC 80
           G       VF L+++            K+I+  ++IH  +   T L  D    +++ T  
Sbjct: 71  GDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMY 130

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A+    S + +R  FD +   NL+ WN +I +YS +    +   +F++++  +   P+ F
Sbjct: 131 AM--CGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNF 188

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TFP VIKA A +    +G A+HG+V+K+   +DLF+ N+L+ FY   G ++ A  +F ++
Sbjct: 189 TFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIM 248

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            ++++VSWNSMI  F   G            +     PD  T+V VL  CA++R++  G+
Sbjct: 249 PERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVCAREREIGVGK 296

Query: 261 ----WP-----------NEAL-------------SIFHELQLSKNV-------------- 278
               W            N AL              +  +L  +KNV              
Sbjct: 297 GVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG 356

Query: 279 -------------------NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                                DE T ++ +  C     +    ++H    KQ    +  L
Sbjct: 357 DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELL 416

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
             + +  Y KCG+L  A  VFH ++S+ +  W+ +I G+A     R +LD   +M+ + +
Sbjct: 417 ANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGL 476

Query: 380 KPNAVTFTNVLCACS 394
            P+  T  ++L ACS
Sbjct: 477 LPDNFTVCSLLSACS 491



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 54/261 (20%)

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
            +++A+ +     +G+ IH +V  S+    D  +   +I  YA+CG    +   F  +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRS 148

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           K++  WN++IS + +   + + +E++ +M                               
Sbjct: 149 KNLFQWNAVISSYSRNELYHEVLEMFIKM------------------------------- 177

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
              +S  H L       PD FTF  V+ ACA +  + IG+ +H  + K G+  + ++  +
Sbjct: 178 ---ISKTHLL-------PDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNA 227

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+  Y   G +  AL++F  +  R++  W++MI  F+  G             +    P+
Sbjct: 228 LVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPD 275

Query: 383 AVTFTNVLCACSHSGLVDEGR 403
             T   VL  C+    +  G+
Sbjct: 276 VATVVTVLPVCAREREIGVGK 296



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 51/243 (20%)

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA------VLSACAKKRDLEFGRWPNEA 265
           IS F + G  +K+  + +E   ++    +V ++       +L A  K++D+E GR     
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGR----- 104

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
             I H +  S  +  D+                                    L T +I 
Sbjct: 105 -KIHHLVSGSTRLRSDDV-----------------------------------LCTRIIT 128

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAV 384
           MY  CG+ D +   F  ++S+++F W+ +I+ ++      E L++F +M  +  + P+  
Sbjct: 129 MYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNF 188

Query: 385 TFTNVLCACSHSGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           TF  V+ AC  +G+ D G  +  + +    G+V  +     +V   G  G + +A++  +
Sbjct: 189 TFPCVIKAC--AGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFD 246

Query: 444 KMP 446
            MP
Sbjct: 247 IMP 249


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 328/568 (57%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           LE A+++FD++ + N+ TWN +I   +      Q+  +F ++ Y   + P+EFT   V++
Sbjct: 144 LESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEM-YGLGFLPDEFTLGSVLR 202

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             A L     GQ +H  ++K  FE    + +SL H Y   G L+    +   +  + VV+
Sbjct: 203 GCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVA 262

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN++I+G  Q G  E+ +  Y  M+M   +                              
Sbjct: 263 WNTLIAGKAQNGCPEEVLNQYNMMKMAGFR------------------------------ 292

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                       PD+ TFVSVLSAC++L  +  G QIHA++ K G      + +SLI MY
Sbjct: 293 ------------PDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMY 340

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           ++ G L+ +++ F   ++ DV +WS+MIA +  +G G EAL+LF +M++ K++ N VTF 
Sbjct: 341 SRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFL 400

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++L ACSHSGL ++G  +F+ M   Y + P ++HYTC+VD+LGRAG L+EA   I  MP+
Sbjct: 401 SLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPV 460

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W  LL ACK+H+  E+AE     +++L+P +  + VLLSNI+A    W NVS++
Sbjct: 461 QPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQI 520

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           RK MR   ++KEPG S +E+   +H+F  G+ SHP   EI   L E+++ LK  GYVP  
Sbjct: 521 RKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPEL 580

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
             +L  ++ E+ +E  L  HSE+ AIA+ L++   + PIR++KNLRVC DCH   K IS+
Sbjct: 581 GSVLHDMDNEE-KEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISR 639

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + NREI++RD  RFHHF+ G CSC +YW
Sbjct: 640 IRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 196/377 (51%), Gaps = 21/377 (5%)

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           Q++  F   +++ P       F  ++++  +L     G+ +H ++I S    D FISN L
Sbjct: 49  QAYDTFTSEIWSDPSL-----FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHL 103

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           ++FY+  G    +  +F  + +++V+S+N +I+G++Q G  E A +L+ EM   N+    
Sbjct: 104 LNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWN 163

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
             M+A L+        EF +   +ALS+F E+       PDEFT  SVL  CA L ++  
Sbjct: 164 -AMIAGLT------QFEFNK---QALSLFKEM-YGLGFLPDEFTLGSVLRGCAGLRSLLA 212

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G ++HA + K G +L+  + +SL  MY K G+L    ++  ++  R V  W+T+IAG A 
Sbjct: 213 GQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQ 272

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            GC  E L+ ++ M+ A  +P+ +TF +VL ACS    + +G+    ++    G    + 
Sbjct: 273 NGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKA-GASSVLA 331

Query: 421 HYTCMVDMLGRAGLLDEAVE-FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
             + ++ M  R+G L+++++ F+++        +W +++ A   H   E A      + +
Sbjct: 332 VVSSLISMYSRSGCLEDSIKAFVDRENF--DVVLWSSMIAAYGFHGRGEEALELFHQMED 389

Query: 480 LEPENHGALVLLSNIYA 496
           L+ E +  +  LS +YA
Sbjct: 390 LKMEAN-EVTFLSLLYA 405



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+++ C  ++ L   +++H  +L+ G        S L          SL    ++   +P
Sbjct: 199 SVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSL--AHMYIKSGSLSDGEKLIKSMP 256

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
              +  WNTLI   + +  P +    +  ++  + + P++ TF  V+ A + L     GQ
Sbjct: 257 IRTVVAWNTLIAGKAQNGCPEEVLNQY-NMMKMAGFRPDKITFVSVLSACSELATLGQGQ 315

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IH  VIK+     L + +SLI  Y+  G L  +   FV     DVV W+SMI+ +   G
Sbjct: 316 QIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHG 375

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             E+A+EL+ +ME   ++ +EVT +++L AC+
Sbjct: 376 RGEEALELFHQMEDLKMEANEVTFLSLLYACS 407


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 357/620 (57%), Gaps = 56/620 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S I+ C ++  +   KQ+H   L+ G+  + +  S L   ++ C      ++  A ++F+
Sbjct: 111 SAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG-----AMFDACKVFE 165

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  +  +W  +I  YS   E  ++ + F +++ +     ++      + A   L   +
Sbjct: 166 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI-DEEVTIDQHVLCSTLGACGALKACK 224

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
            G+++H  V+K  FE D+F+ N+L   Y+  GD+  A  VF +  + ++VVS+  +I G+
Sbjct: 225 FGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGY 284

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+    EK                                          LS+F EL+  
Sbjct: 285 VETEQIEKG-----------------------------------------LSVFVELR-R 302

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + + P+EFTF S++ ACA   A++ G Q+HA++ K     + ++++ L+DMY KCG L+ 
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEH 362

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A++ F  +       W+++++ F  +G G++A+  F RM +  VKPNA+TF ++L  CSH
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSH 422

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG  +F  M+  YGVVPG +HY+C++D+LGRAG L EA EFI +MP  P A  W 
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 482

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           + LGAC+IH + E+ + A   L++LEP+N GALVLLSNIYA   +W++V  +R  MR   
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KK PG S ++V  + H F A + SH     IY KLD ++ ++K+ GYVP  +  + L  
Sbjct: 543 VKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPX-TDSVPLDM 601

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           ++ ++E+ L+ HSER+A+A+ LIS+   +PI + KNLRVC DCH+  K ISK+  R+I++
Sbjct: 602 DDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIV 661

Query: 636 RDRYRFHHFRGGNCSCMDYW 655
           RD  RFHHF  G+CSC DYW
Sbjct: 662 RDNSRFHHFTDGSCSCGDYW 681



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 39  HPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H + S +  C  +K  K    +H+ +++ G   D +  + L           +E A  +F
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD--MYSKAGDMESASNVF 265

Query: 96  DQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
               +  N+ ++  LI  Y  + +  +   +F++L       PNEFTF  +IKA A    
Sbjct: 266 GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL-RRQGIEPNEFTFSSLIKACANQAA 324

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
              G  +H  V+K +F++D F+S+ L+  Y  CG L  A   F  IG    ++WNS++S 
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSV 384

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           F Q G  + AI+ +  M    VKP+ +T +++L+ C+    +E      E L  F+ +  
Sbjct: 385 FGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVE------EGLDYFYSMDK 438

Query: 275 SKNVNPDEFTFVSVLSACAQLGAM 298
           +  V P E  +  V+    + G +
Sbjct: 439 TYGVVPGEEHYSCVIDLLGRAGRL 462



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 3/186 (1%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D      V+   A+   +  G Q+HA +   G     +LT  L++MY+KCG LD AL++F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
            T+  R++  W+ MI+G +      EA+  F  M+     P    F++ + AC+  G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-G 459
            G+   + +   +G+   +   + + DM  + G + +A +  E+MP     S W A++ G
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDG 181

Query: 460 ACKIHE 465
             KI E
Sbjct: 182 YSKIGE 187


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 321/520 (61%), Gaps = 13/520 (2%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L K C ++K L++IH Q+++TGL  D  +AS++   C       + YA  +F QI  PNL
Sbjct: 2   LDKNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCT-SPAGDINYAYLVFTQIRNPNL 60

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIH 162
           + WNT+IR +S S+ P  +  +F+ +++ SP   P   T+P V KA A+L     G  +H
Sbjct: 61  FVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLH 120

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
           G VIK   E+D FI N++++ Y  CG L  A  +F      DVV+WN+MI G  + G  +
Sbjct: 121 GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEID 180

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           K+  L+ +M + N     V+  +++S   +K     GR+  EA+ +F  +Q  + + P E
Sbjct: 181 KSRRLFDKMLLRNT----VSWNSMISGYVRK-----GRFF-EAMELFSRMQ-EEGIKPSE 229

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           FT VS+L+ACA LGA+  G  IH  + K    LN  + T++IDMY+KCG++DKAL+VF +
Sbjct: 230 FTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKS 289

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              + +  W+++I G AM G G EA+ LFS+++ + +KP+ V+F  VL AC+H+G+VD  
Sbjct: 290 APKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRA 349

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           + +F  M   Y + P +KHY+CMVD+LGRAGLL+EA E I+ MP+ P A +WG+LL +C+
Sbjct: 350 KDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCR 409

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            + N+E+A+ A   + EL+P    + +LLSN+YA    ++   E R  ++   + KEPGC
Sbjct: 410 EYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGC 469

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           S IEVNGE+H+F+AG   HP  K+IY  LD++   LK  G
Sbjct: 470 SLIEVNGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKEMG 509


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 338/616 (54%), Gaps = 73/616 (11%)

Query: 55  KQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQ+H   L+ G   D +   SA  +++   L        AR MFD++P  NL TWN    
Sbjct: 129 KQLHALALKGGNILDVFVGCSAFDMYSKTGL-----RPEARNMFDEMPHRNLATWN---- 179

Query: 112 AYSSSA-------EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           AY S+A       + I +F  FL +       PN  TF   + A A +V   +G+ +HG 
Sbjct: 180 AYMSNAVQDGRCLDAIAAFKKFLCVDGE----PNAITFCAFLNACADIVSLELGRQLHGF 235

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--KKDVVSWNSMISGFVQGGFFE 222
           +++S + +D+ + N LI FY  CGD+  +  VF  IG  +++VVSW S+++  VQ    E
Sbjct: 236 IVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEE 295

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           +A  ++                                           LQ  K V P +
Sbjct: 296 RACMVF-------------------------------------------LQARKEVEPTD 312

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
           F   SVLSACA+LG +++G  +HA   K  ++ N ++ ++L+D+Y KCG+++ A +VF  
Sbjct: 313 FMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFRE 372

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK--VKPNAVTFTNVLCACSHSGLVD 400
           +  R++  W+ MI G+A  G    AL LF  M      +  + VT  +VL ACS +G V+
Sbjct: 373 MPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVE 432

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            G   F  M   YG+ PG +HY C+VD+LGR+GL+D A EFI++MPI+P  SVWGALLGA
Sbjct: 433 RGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGA 492

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           CK+H   +L + A   L EL+P++ G  V+ SN+ A  G+W+  + +RK MR  G+KK  
Sbjct: 493 CKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNV 552

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS-HLLQLVEEEDV 579
           G S + V   +H F A +S H    EI + L ++   +K  GYVP+ +  L  L EEE  
Sbjct: 553 GYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKA 612

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            E  +  HSE++A+A+GLI++    PIRI KNLR+C DCH+  K ISK+  REI++RD  
Sbjct: 613 SE--VWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNN 670

Query: 640 RFHHFRGGNCSCMDYW 655
           RFH F+ G CSC DYW
Sbjct: 671 RFHRFKDGWCSCKDYW 686



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 45/249 (18%)

Query: 157 VGQAIHGMVIKSSFEDDL--FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           +G+A+H  ++++  +  L  F+ N L++ Y+       A  V  +   + VV+W S+ISG
Sbjct: 25  LGRAVHAHILRTH-DTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISG 83

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
            V    F  A+  +  M  E V P++                                  
Sbjct: 84  CVHNRRFTSALLHFSNMRRECVLPND---------------------------------- 109

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                   FTF  V  A A L     G Q+HA   K G  L+ ++  S  DMY+K G   
Sbjct: 110 --------FTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRP 161

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           +A  +F  +  R++  W+  ++     G   +A+  F +      +PNA+TF   L AC+
Sbjct: 162 EARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACA 221

Query: 395 HSGLVDEGR 403
               ++ GR
Sbjct: 222 DIVSLELGR 230



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 300 IGVQIHAK-MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
           +G  +HA  ++     L  +L   L++MY+K    + A  V      R V  W+++I+G 
Sbjct: 25  LGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGC 84

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
                   AL  FS M+   V PN  TF  V  A +   +   G+   + +    G +  
Sbjct: 85  VHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQ-LHALALKGGNILD 143

Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           V       DM  + GL  EA    ++MP
Sbjct: 144 VFVGCSAFDMYSKTGLRPEARNMFDEMP 171


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/624 (35%), Positives = 335/624 (53%), Gaps = 46/624 (7%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           HQ     +   +K CK+       H  + + GL  D  + + L    +   F  ++YA  
Sbjct: 5   HQARAVHIIQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLN--SYLRFRRIQYAHH 62

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +FD++ +PN+ +W +L+  Y +   P  +  ++ ++   S   PN FT   VI + + L 
Sbjct: 63  LFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKM-SESEVSPNGFTLATVINSCSILA 121

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             + G+ +H  V     + +L + +SL+  Y  C D+  A  VF  +  ++VVSW +MI+
Sbjct: 122 DLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIA 181

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+ Q G                                            EAL +F E  
Sbjct: 182 GYAQNGK-----------------------------------------GYEALEVFREFS 200

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                 P+ F   SV++ACA LG +  G   H  + + G +LN  + ++L+DMY KCG+ 
Sbjct: 201 SYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSF 260

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             + +VF  +++  V  +++MI G A YG G+ +L+LF  M + KV PN VTF  +L AC
Sbjct: 261 LYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHAC 320

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP--GA 451
           SHSGLVDEG    N M   +GV+P V+HYTC+VDML R G LDEA +  + + + P  GA
Sbjct: 321 SHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGA 380

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
            +WG LL + ++H  V++A  A   L+E   +  GA V LSN Y   G+W+N   LR  M
Sbjct: 381 LLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEM 440

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
            + G+ KEPGCS IE+   I+ F AG+ S     E+ S L E+  R+   G V   + L+
Sbjct: 441 ELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGSTGLV 500

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
            +  E++V+E+ + LHSERLA+A+GLIS+     IR++KNLR+C DCH   KLISK+  R
Sbjct: 501 FVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLISKIVER 560

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           + ++RD  RFHHF+ G+C+C D+W
Sbjct: 561 DFVVRDVNRFHHFKDGSCTCKDFW 584


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 363/632 (57%), Gaps = 56/632 (8%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF--------------SSLEYAR 92
           +  N+    ++ T  +R+G   D  SA ++F    + T                 ++ AR
Sbjct: 1   KSSNVISSNRVITNHIRSG---DLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVAR 57

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           ++FD+IP+P+++++N ++  Y  +A+   + + F Q+                +K  A  
Sbjct: 58  QLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQM---------------PVKDTASW 102

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFIS---------NSLIHFYAICGDLAMAYCVFVMIGKK 203
                G + +GM+ ++    +LF+          N++I  Y   GDL +A  +F +   +
Sbjct: 103 NTMISGFSQNGMMDQAR---ELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVR 159

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            VV+W +MI+GF++ G  E A + + EM M+N+    VT  A+++   +    E G    
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEMPMKNL----VTWNAMIAGYIENCQAENG---- 211

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
             L +F  + +     P+  +  SVL  C+ L A+ +G Q+H  + K  +  N    TSL
Sbjct: 212 --LKLFKRM-VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSL 268

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           + MY KCG+L+ A ++F  +  +DV  W+ MI+G+A +G G +AL LF +M++  +KP+ 
Sbjct: 269 LSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDW 328

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           +TF  VL AC+H+G VD G  +FN M   YGV     HYTC+VD+LGR G L EAV+ I+
Sbjct: 329 ITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIK 388

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
           KMP  P ++++G LLGAC+IH+N+ELAE+A  +LL L+PE+    V L+N+YA   +WD+
Sbjct: 389 KMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDH 448

Query: 504 VSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGY 563
           V+ +R+ M+ + + K PG S IEV   +H+F +G+  HP    I+ KL+E+  +++  GY
Sbjct: 449 VAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGY 508

Query: 564 VPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAK 623
           VP+  + L  V EE  ++Q L  HSE+LAIAYGLI +    PIR+ KNLRVCGDCH+  K
Sbjct: 509 VPDLEYALHDVGEEQ-KKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATK 567

Query: 624 LISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IS +  R I++RD  RFHHFR G CSC DYW
Sbjct: 568 YISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/573 (39%), Positives = 339/573 (59%), Gaps = 21/573 (3%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNS--PYFPNEFTFPFV 145
           YA  +F  +  P+ +    L+R    +  P+  F +F  L+  + +  P+ P  F F  +
Sbjct: 90  YALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLP--FAFSTL 147

Query: 146 IKAAARLVQFRVGQAIHGM-VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
            K+A          A H + V+   F+   F+ NSLI  Y  CGD+  A  VF  + +KD
Sbjct: 148 AKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKD 207

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V+SW S++  + + G    A E++    ++    D V   A+++  A+         P +
Sbjct: 208 VISWTSIVVAYTRSGDMRSAEEVFGRCPVK----DMVAWTAMVTGYAQNA------MPVK 257

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F  +     +  DE +    +SACAQLGA+     +    ++ G   N  + + L+
Sbjct: 258 ALEVFDRMA-ELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLV 316

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNA 383
           DMY KCG +D+A +VF+ ++ ++V+ +S+MIAG A +G   EA+ LF  M   A V+PN 
Sbjct: 317 DMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNH 376

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
           VTF  VL ACSH+G+V EGR +F QM+  YG++P   HY CMVD+LGRAGL+DEA++ + 
Sbjct: 377 VTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVR 436

Query: 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503
            M + P   VWGALLGAC+IH   E+A+    HL +LEPE+ G  VLLSNI A  GKW+ 
Sbjct: 437 SMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEE 496

Query: 504 VSELRKHMRVSGLKKEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           VS++R  MR   LKK+P  S  E  +G +H+F AG+++HP   EI   L E+VA+LK  G
Sbjct: 497 VSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEG 556

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           YVP  S ++  V +E+ +E+ L  HSE+LA+++GL+++     IRI+KNLR+C DCH   
Sbjct: 557 YVPILSSIVYDVNDEE-KERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFM 615

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +L+S++ + EI++RD  RFHHF+ G CSC  +W
Sbjct: 616 QLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 326/565 (57%), Gaps = 45/565 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A  +FD +P+ +   W+T++  + S+  P+++  ++ ++  +     +E     VI+A  
Sbjct: 165 AIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHG-VAEDEVVMVGVIQACT 223

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                R+G ++HG  ++     D+ I+ SL+  YA  G   +A  VF M+  ++ VSWN+
Sbjct: 224 LTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNA 283

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +ISGF Q G                                           +EAL +F 
Sbjct: 284 LISGFAQNGH-----------------------------------------ADEALDLFR 302

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+  S  + PD    VS L ACA +G + +G  IH  + ++ ++  C L T+++DMY+KC
Sbjct: 303 EMSTS-GLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKC 360

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G+L+ A ++F+ + SRD+ +W+ MIA    +GCG +AL LF  + E  +KP+  TF ++L
Sbjct: 361 GSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLL 420

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            A SHSGLV+EG+ +F++M   +G+ P  KH  C+VD+L R+GL++EA E +  M   P 
Sbjct: 421 SALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPT 480

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W ALL  C  ++ +EL E     +LE +PE+ G L L+SN+YA   KWD V E+RK 
Sbjct: 481 IPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKL 540

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           M+ SG KK PG S IEV+G  H F+  + SHP  +EI   + ++   ++  GYVP R+  
Sbjct: 541 MKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVP-RTEF 599

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           +    +EDV+EQ L+ HSERLAIA+GL++  P   + I+KNLRVCGDCH   K ISK+ +
Sbjct: 600 VYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVD 659

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           REI++RD  RFHHF+ G CSC DYW
Sbjct: 660 REIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P  AL +F  L  S    PD  TF   L+ACA+LG +D    +  +    G   + ++ +
Sbjct: 93  PGAALRVFRALPSS--ARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCS 150

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ +Y++CG +  A+ VF  +  +D   WSTM+AGF   G   EAL ++SRM+E  V  
Sbjct: 151 ALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAE 210

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + V    V+ AC+ +G    G     +    +G+   V   T +VDM  + G  D A + 
Sbjct: 211 DEVVMVGVIQACTLTGNTRMGASVHGRFLR-HGMRMDVVIATSLVDMYAKNGHFDVARQV 269

Query: 442 IEKMPIVPGASVWGALLG--ACKIHENVELAEYACSHLLELEPENHGALV 489
              MP     S W AL+   A   H +  L  +       L+P++ GALV
Sbjct: 270 FRMMPYRNAVS-WNALISGFAQNGHADEALDLFREMSTSGLQPDS-GALV 317



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 127/272 (46%), Gaps = 15/272 (5%)

Query: 44  LIKQCK---NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +I+ C    N +    +H + LR G+  D   A+ L    A       + AR++F  +P 
Sbjct: 218 VIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKN--GHFDVARQVFRMMPY 275

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N  +WN LI  ++ +    ++  +F ++   S   P+       + A A +   ++G++
Sbjct: 276 RNAVSWNALISGFAQNGHADEALDLFREM-STSGLQPDSGALVSALLACADVGFLKLGKS 334

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IHG +++   E    +  +++  Y+ CG L  A  +F  +  +D+V WN+MI+     G 
Sbjct: 335 IHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGC 393

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-WPNEALSIFHELQLSKNVN 279
              A+ L++E+    +KPD  T  ++LSA +    +E G+ W +  ++ F        + 
Sbjct: 394 GHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEF-------GIE 446

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
           P E   V V+   A+ G ++   ++ A M  +
Sbjct: 447 PTEKHCVCVVDLLARSGLVEEANEMLASMHTE 478


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 358/624 (57%), Gaps = 58/624 (9%)

Query: 39  HPVF-SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           H  F S+IK C ++K+L   + +H + L++GL  +    + L    AL     ++ A  +
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV--ALTKCKEIDDAFSL 361

Query: 95  FDQIPQ-PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           F  +    ++ +W  +I  Y  + +  Q+  +F  L+      PN FT+  ++      V
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLF-SLMRREGVKPNHFTYSTILT-----V 415

Query: 154 QFRVG-QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
           Q  V    IH  VIK+++E    +  +L+  +   G+++ A  VF +I  KDV++W++M+
Sbjct: 416 QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAML 475

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           +G+ Q G  E                                         EA  IFH+L
Sbjct: 476 AGYAQAGETE-----------------------------------------EAAKIFHQL 494

Query: 273 QLSKNVNPDEFTFVSVLSAC-AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
              + + P+EFTF S+++AC A   +++ G Q HA   K  +     +++SL+ +Y K G
Sbjct: 495 T-REGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRG 553

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           N++ A E+F   K RD+  W++MI+G+A +G  ++AL++F  MQ+  ++ +A+TF  V+ 
Sbjct: 554 NIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVIS 613

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           AC+H+GLV +G+ +FN M   + + P ++HY+CM+D+  RAG+L +A++ I  MP  P A
Sbjct: 614 ACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAA 673

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           +VW  +L A ++H N+EL + A   ++ LEP++  A VLLSNIYA  G W     +RK M
Sbjct: 674 TVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLM 733

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
               +KKEPG S IEV  + + FLAG+ SHPL   IYSKL E+  RL+  GY P+ +++ 
Sbjct: 734 DKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVF 793

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +E+E  +E  L+ HSERLAIA+GLI+  P  P++IVKNLRVCGDCH+  KL+S +  R
Sbjct: 794 HDIEDEQ-KETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKR 852

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
            I++RD  RFHHF+GG CSC DYW
Sbjct: 853 YIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 215/497 (43%), Gaps = 110/497 (22%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-------------------- 86
           +C   ++   +   + R+GL  D Y+ S + + CA G+F+                    
Sbjct: 79  RCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA-GSFNGTVGEQVHCQCVKCGLVHHL 137

Query: 87  --------------SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132
                         ++   R +FD++   ++ +WN+L+  YS +    Q + +F  L+  
Sbjct: 138 SVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFC-LMQV 196

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
             Y P+ +T   VI A A      +G  IH +V+K  FE +  + NSLI   +  G L  
Sbjct: 197 EGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRD 256

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  VF  +  KD VSWNSMI+G V  G   +A E +  M++   KP   T  +V+ +CA 
Sbjct: 257 ARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCAS 316

Query: 253 KRDLEFGRW-----------------------------PNEALSIFHELQLSKNVNPDEF 283
            ++L   R                               ++A S+F  +   ++V     
Sbjct: 317 LKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSV----V 372

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY------------------------- 318
           ++ +++S   Q G  D  V + + M+++G+K N +                         
Sbjct: 373 SWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTN 432

Query: 319 ------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
                 + T+L+D + K GN+  A++VF  ++++DV  WS M+AG+A  G   EA  +F 
Sbjct: 433 YEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFH 492

Query: 373 RMQEAKVKPNAVTFTNVLCACSH-SGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVD 427
           ++    +KPN  TF +++ AC+  +  V++G+ F       Y +   + +  C    +V 
Sbjct: 493 QLTREGIKPNEFTFCSIINACTAPTASVEQGKQFH-----AYAIKLRLNNALCVSSSLVT 547

Query: 428 MLGRAGLLDEAVEFIEK 444
           +  + G ++ A E  ++
Sbjct: 548 LYAKRGNIESAHEIFKR 564



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 43/309 (13%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S   +A+++FDQ P  +L   N L+  YS   +  ++  +F+ L Y S   P+ +T   V
Sbjct: 50  SDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSL-YRSGLSPDSYTMSCV 108

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +   A      VG+ +H   +K      L + NSL+  Y   G++     VF  +G +DV
Sbjct: 109 LSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDV 168

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWNS+++G+    F ++  EL+  M++E  +PD  T+  V++A A +            
Sbjct: 169 VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQ------------ 216

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                                         GA+ IG+QIHA + K G +    +  SLI 
Sbjct: 217 ------------------------------GAVAIGMQIHALVVKLGFETERLVCNSLIS 246

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M +K G L  A  VF  ++++D   W++MIAG  + G   EA + F+ MQ A  KP   T
Sbjct: 247 MLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHAT 306

Query: 386 FTNVLCACS 394
           F +V+ +C+
Sbjct: 307 FASVIKSCA 315



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL +F  L  S  ++PD +T   VLS CA      +G Q+H +  K G+  +  +  SL
Sbjct: 85  EALHLFVSLYRS-GLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSL 143

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           +DMYTK GN+     VF  +  RDV  W++++ G++      +  +LF  MQ    +P+ 
Sbjct: 144 VDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDY 203

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            T + V+ A ++ G V  G M  + +    G          ++ ML ++G+L +A    +
Sbjct: 204 YTVSTVIAALANQGAVAIG-MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFD 262

Query: 444 KM---------PIVPGASVWGALLGACKIHENVELAEYACSH 476
            M          ++ G  + G  L A +   N++LA    +H
Sbjct: 263 NMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTH 304


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 359/631 (56%), Gaps = 54/631 (8%)

Query: 32   NGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
            NG       V S +  C ++  +   +QIH + ++ GL  D   ++ L T  A      +
Sbjct: 450  NGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYA--ETDCM 507

Query: 89   EYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
            E  +++F  +P+ +  +WN+ I A ++S A  +Q+   FL+++  + + PN  TF  ++ 
Sbjct: 508  EEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM-QAGWKPNRVTFINILS 566

Query: 148  AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVV 206
            A + L    +G+ IH +++K S  DD  I N+L+ FY  C  +     +F  M  ++D V
Sbjct: 567  AVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEV 626

Query: 207  SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            SWN+MISG++  G   KA+ L                                 W     
Sbjct: 627  SWNAMISGYIHNGILHKAMGLV--------------------------------W----- 649

Query: 267  SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                 L + K    D+FT  +VLSACA +  ++ G+++HA   +  ++    + ++L+DM
Sbjct: 650  -----LMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDM 704

Query: 327  YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
            Y KCG +D A   F  +  R+++ W++MI+G+A +G G +AL LF++M++    P+ VTF
Sbjct: 705  YAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTF 764

Query: 387  TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              VL ACSH GLVDEG   F  M  VY + P ++H++CMVD+LGRAG + +  EFI+ MP
Sbjct: 765  VGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMP 824

Query: 447  IVPGASVWGALLGAC--KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
            + P A +W  +LGAC      N EL   A   L+ELEP N    VLLSN++A  GKW++V
Sbjct: 825  MNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDV 884

Query: 505  SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
             E R  MR + +KKE GCS + +   +H F+AG+ +HP  ++IY KL EI+ +++  GYV
Sbjct: 885  EEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYV 944

Query: 565  PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
            P   + L    E + +E+ L+ HSE+LAIA+ +++ +   PIRI+KNLRVCGDCHT  K 
Sbjct: 945  PETKYAL-YDLELENKEELLSYHSEKLAIAF-VLTRQSELPIRIIKNLRVCGDCHTAFKY 1002

Query: 625  ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IS + NR+I+LRD  RFHHF GG CSC DYW
Sbjct: 1003 ISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 205/469 (43%), Gaps = 71/469 (15%)

Query: 31  NNGHQHHPHPVFSL----IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS 86
           N+ H H   P  +L     +    ++   Q+H Q+ +TGL  D +  + L          
Sbjct: 31  NSSHHHLHFPPLNLDYNRYRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRA--G 88

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +L  A+++FD++PQ NL +W+ L+  Y+ +  P ++ M+F  ++ ++   PN +     +
Sbjct: 89  NLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII-SAGLLPNHYAIGSAL 147

Query: 147 KAAARL--VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKK 203
           +A   L     ++G  IHG++ KS +  D+ +SN L+  Y+ C   +  A  VF  I  K
Sbjct: 148 RACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMK 207

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
              SWNS+IS + + G    A +L+  M+ E                      E    PN
Sbjct: 208 TSASWNSIISVYCRRGDAISAFKLFSSMQREAT--------------------ELNCRPN 247

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV----QIHAKMKKQGIKLNCYL 319
                             E+TF S+++    L  +D G+    Q+ A+++K     + Y+
Sbjct: 248 ------------------EYTFCSLVTVACSL--VDCGLTLLEQMLARIEKSSFVKDLYV 287

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            ++L+  + + G +D A  +F  +  R+    + ++ G A    G EA  +F  M++  V
Sbjct: 288 GSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-V 346

Query: 380 KPNAVTFTNVLCACSHSGLVDEGR---------MFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           + NA ++  +L A +    + EG+         +  N +  V+ ++        +V++  
Sbjct: 347 EINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNA-----LVNLYA 401

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +   +D A    + MP     S W +++     +E  E A  AC H + 
Sbjct: 402 KCNAIDNARSIFQLMPSKDTVS-WNSIISGLDHNERFEEA-VACFHTMR 448



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 149/342 (43%), Gaps = 52/342 (15%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L+Q+  ++ ++    D Y  S L +      +  ++ A+ +F+Q+   N  T N L+   
Sbjct: 269 LEQMLARIEKSSFVKDLYVGSALVS--GFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGL 326

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF----RVGQAIHGMVIKSS 169
           +   +  ++  IF ++        N  ++  ++ A           R GQ +H  +I+++
Sbjct: 327 ARQHQGEEAAKIFKEM--KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNA 384

Query: 170 FEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
             D  + I N+L++ YA C  +  A  +F ++  KD VSWNS+ISG      FE+A+  +
Sbjct: 385 LVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACF 444

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
             M    + P + ++++ LS+C                                      
Sbjct: 445 HTMRRNGMVPSKFSVISTLSSC-------------------------------------- 466

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
               A LG + +G QIH +  K G+ L+  ++ +L+ +Y +   +++  +VF  +   D 
Sbjct: 467 ----ASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 349 FVWSTMIAGFAMYGCG-REALDLFSRMQEAKVKPNAVTFTNV 389
             W++ I   A       +A+  F  M +A  KPN VTF N+
Sbjct: 523 VSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 186/431 (43%), Gaps = 57/431 (13%)

Query: 51  IKQLKQIHTQMLRTGLFF------DPYSASKLFTPCALGTFS----SLEYAREMFDQIPQ 100
           ++  +++   ML+ G+         PY++  + +   +  +S    S++ AR +F++I  
Sbjct: 147 LRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKM 206

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF---PNEFTFPFVIKAAARLVQ--F 155
               +WN++I  Y    + I +F +F  +   +      PNE+TF  ++  A  LV    
Sbjct: 207 KTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGL 266

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            + + +   + KSSF  DL++ ++L+  +A  G +  A  +F  +  ++ V+ N ++ G 
Sbjct: 267 TLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGL 326

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +    E+A ++++EM+ + V+ +  +   +LSA  +  +L+ G+               
Sbjct: 327 ARQHQGEEAAKIFKEMK-DLVEINASSYAVLLSAFTEFSNLKEGKRK------------- 372

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLTTSLIDMYTKCGNLD 334
                                    G ++HA + +   + +   +  +L+++Y KC  +D
Sbjct: 373 -------------------------GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAID 407

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  +F  + S+D   W+++I+G        EA+  F  M+   + P+  +  + L +C+
Sbjct: 408 NARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCA 467

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             G +  G+    +     G+   V     ++ +      ++E  +    MP     S W
Sbjct: 468 SLGWIMLGQQIHGEGIKC-GLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVS-W 525

Query: 455 GALLGACKIHE 465
            + +GA    E
Sbjct: 526 NSFIGALATSE 536


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/662 (36%), Positives = 367/662 (55%), Gaps = 70/662 (10%)

Query: 56  QIHTQMLRTGLFFD-PYSAS--KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           Q+HT +++ GL    P S S   L+  C      ++  AR +FD+    ++ TWN++I  
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCG-----NVRKARILFDKTEVKSVVTWNSMISG 269

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y+++   +++  +F  +  N     +E +F  VIK  A L + R  + +H  V+K  F  
Sbjct: 270 YAANGLDLEALGMFYSMRLNYVRL-SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLF 328

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           D  I  +L+  Y+ C  +  A  +F  IG   +VVSW +MISGF+Q    E+A++L+ EM
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388

Query: 232 EMEN-----------------VKPDEV--------------TMVAVLSACAKK------- 253
           + +                  + P EV                 A+L A  K        
Sbjct: 389 KRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAA 448

Query: 254 ------RDLEFGRWP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
                  D +   W               A+ +F EL     + P+EFTF S+L+ CA  
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT-KGGIKPNEFTFSSILNVCAAT 507

Query: 296 GA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
            A M  G Q H    K  +  +  ++++L+ MY K GN++ A EVF   + +D+  W++M
Sbjct: 508 NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           I+G+A +G   +ALD+F  M++ KVK + VTF  V  AC+H+GLV+EG  +F+ M     
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
           + P  +H +CMVD+  RAG L++A++ IE MP   G+++W  +L AC++H+  EL   A 
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687

Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
             ++ ++PE+  A VLLSN+YA++G W   +++RK M    +KKEPG S IEV  + + F
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSF 747

Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
           LAG+ SHPL  +IY KL+++  RLK  GY P+ S++LQ +++E  +E  L  HSERLAIA
Sbjct: 748 LAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEH-KEAVLAQHSERLAIA 806

Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG-GNCSCMD 653
           +GLI+     P+ I+KNLRVCGDCH V KLI+K+  REI++RD  RFHHF   G CSC D
Sbjct: 807 FGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD 866

Query: 654 YW 655
           +W
Sbjct: 867 FW 868



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 189/412 (45%), Gaps = 68/412 (16%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q+H Q ++ G   D    + L      G  S+ +  R++FD++ + N+ TW TLI  Y+
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKG--SNFKDGRKVFDEMKERNVVTWTTLISGYA 170

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            ++   +   +F+++  N    PN FTF   +   A       G  +H +V+K+  +  +
Sbjct: 171 RNSMNDEVLTLFMRM-QNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 229

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            +SNSLI+ Y  CG++  A  +F     K VV+WNSMISG+   G   +A+ ++  M + 
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLN 289

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPN-----------------------------EA 265
            V+  E +  +V+  CA  ++L F    +                             +A
Sbjct: 290 YVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA 349

Query: 266 LSIFHELQLSKNV-------------------------------NPDEFTFVSVLSACAQ 294
           L +F E+    NV                                P+EFT+  +L+A   
Sbjct: 350 LRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV 409

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +       ++HA++ K   + +  + T+L+D Y K G +++A +VF  +  +D+  WS M
Sbjct: 410 ISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL-VDEGRMF 405
           +AG+A  G    A+ +F  + +  +KPN  TF+++L  C+ +   + +G+ F
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF 517



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 146/316 (46%), Gaps = 45/316 (14%)

Query: 82  LGTFSS--LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
            GT SS  L  A  +FD+ P  +  ++ +L+  +S      ++  +FL  ++      + 
Sbjct: 35  FGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLN-IHRLGMEMDC 93

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
             F  V+K +A L     G+ +H   IK  F DD+ +  SL+  Y    +      VF  
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           + +++VV+W ++ISG+ +                 N   DEV                  
Sbjct: 154 MKERNVVTWTTLISGYAR-----------------NSMNDEV------------------ 178

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                 L++F  +Q ++   P+ FTF + L   A+ G    G+Q+H  + K G+     +
Sbjct: 179 ------LTLFMRMQ-NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           + SLI++Y KCGN+ KA  +F   + + V  W++MI+G+A  G   EAL +F  M+   V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 380 KPNAVTFTNVLCACSH 395
           + +  +F +V+  C++
Sbjct: 292 RLSESSFASVIKLCAN 307



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 58/118 (49%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F SVL   A L     G Q+H +  K G   +  + TSL+D Y K  N     +VF  +K
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
            R+V  W+T+I+G+A      E L LF RMQ    +PN+ TF   L   +  G+   G
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/630 (35%), Positives = 341/630 (54%), Gaps = 63/630 (10%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           V  +  +C  +++  ++  +M     F D  S + + T         LE+A  +F+++ +
Sbjct: 405 VVDMYAKCGKMEEANKVFQRMK----FKDVVSWNAMVT--GYSQAGRLEHALSLFERMTE 458

Query: 101 PNL----YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            N+     TW  +I  Y+   +  ++  +F Q+  +    PN  T   ++ A   +    
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMC-DCGSRPNVVTLVSLLSACVSVGALL 517

Query: 157 VGQAIHGMVIK--------SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--VV 206
            G+  H   IK            DDL + N LI  YA C    +A  +F  +  KD  VV
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVV 577

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +W  MI G+ Q G    A++L+  M                                   
Sbjct: 578 TWTVMIGGYAQHGDANNALQLFSGM----------------------------------- 602

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI-KLNCYLTTSLID 325
                 ++ K++ P++FT    L ACA+L A+  G Q+HA + +     +  ++   LID
Sbjct: 603 -----FKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLID 657

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY+K G++D A  VF  +  R+   W++++ G+ M+G G +AL +F  M++  + P+ +T
Sbjct: 658 MYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGIT 717

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL ACSHSG+VD G  FFN+M   +GV PG +HY CMVD+ GRAG L EA++ I +M
Sbjct: 718 FLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEM 777

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+ P   VW ALL AC++H NVEL E+A + LLELE  N G+  LLSNIYA   +W +V+
Sbjct: 778 PMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVA 837

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +R  M+ +G+KK PGCS I+    +  F  G+ SHP  ++IY  L +++ R+K+ GYVP
Sbjct: 838 RIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVP 897

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
             S  L  V++E+ +   L  HSE+LA+AYG++++ P  PIRI KNLR+CGDCH+    I
Sbjct: 898 QTSFALHDVDDEE-KGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYI 956

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK+   EI+LRD  RFHHF+ G+CSC  YW
Sbjct: 957 SKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 212/433 (48%), Gaps = 35/433 (8%)

Query: 58  HTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQ---PNLYTWNTLI 110
           H  + R+G       AS +F   A+    G   +L +A  MFD +      +L +WN+++
Sbjct: 282 HATVSRSGF------ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVV 335

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            AY  +++   +  +F ++       P+  +   ++ A A L     G+ +HG  I+S  
Sbjct: 336 SAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGL 395

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
            DD+F+ N+++  YA CG +  A  VF  +  KDVVSWN+M++G+ Q G  E A+ L+  
Sbjct: 396 VDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFER 455

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M  EN++ D VT  AV++  A++          EAL +F ++       P+  T VS+LS
Sbjct: 456 MTEENIELDVVTWTAVITGYAQRGQ------GCEALDVFRQM-CDCGSRPNVVTLVSLLS 508

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKL--------NCYLTTSLIDMYTKCGNLDKALEVFHT 342
           AC  +GA+  G + H    K  + L        +  +   LIDMY KC + + A ++F +
Sbjct: 509 ACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDS 568

Query: 343 V--KSRDVFVWSTMIAGFAMYGCGREALDLFSRM--QEAKVKPNAVTFTNVLCACSHSGL 398
           V  K RDV  W+ MI G+A +G    AL LFS M   +  +KPN  T +  L AC+    
Sbjct: 569 VSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAA 628

Query: 399 VDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           +  GR      +   YG V  +    C++DM  ++G +D A    + MP     S W +L
Sbjct: 629 LRFGRQVHAYVLRNFYGSVM-LFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSL 686

Query: 458 LGACKIHENVELA 470
           +    +H   E A
Sbjct: 687 MTGYGMHGRGEDA 699



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 221/487 (45%), Gaps = 71/487 (14%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF---SSLEYAREMFD 96
           P+ +L K+C ++   K +H Q +  GL F  + A+ L     +GT+   +S  YA  + +
Sbjct: 164 PITAL-KECNSLAHAKLLHQQSIMQGLLF--HLATNL-----IGTYIASNSTAYAILLLE 215

Query: 97  QIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           ++P    +++ WN LIR       P   F ++ Q+  +  + P+ +TFPFV KA A L  
Sbjct: 216 RLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQM-KSLGWTPDHYTFPFVFKACANLSS 274

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI---GKKDVVSWNSM 211
             +G ++H  V +S F  ++F+ N+++  Y  CG L  A+ +F  +   G +D+VSWNS+
Sbjct: 275 LSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSV 334

Query: 212 ISGFVQGGFFEKAIELYREMEMENV-KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +S ++       A+ L+ +M   ++  PD +++V +L ACA                   
Sbjct: 335 VSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS------------------ 376

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                                   L A   G Q+H    + G+  + ++  +++DMY KC
Sbjct: 377 ------------------------LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +++A +VF  +K +DV  W+ M+ G++  G    AL LF RM E  ++ + VT+T V+
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE-------AVEFIE 443
              +  G   E    F QM    G  P V     ++      G L         A++FI 
Sbjct: 473 TGYAQRGQGCEALDVFRQMCDC-GSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFIL 531

Query: 444 KMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI--YAKTGK 500
            +    PGA     + G   ++   +  E A      + P++   +     I  YA+ G 
Sbjct: 532 NLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGD 591

Query: 501 WDNVSEL 507
            +N  +L
Sbjct: 592 ANNALQL 598


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/611 (35%), Positives = 353/611 (57%), Gaps = 55/611 (9%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF--SSLEYAREMFDQIPQP-NLYTW 106
           N+K +  +H  +++     +P S       CA  +    +  YA  +  + P P + + +
Sbjct: 8   NMKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFPY 67

Query: 107 NTLIRAYSSSAEPIQSFMIFLQL-VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           N +IR  +  A P  +  +F  +   N P+  + FTFP ++K++           IH +V
Sbjct: 68  NAVIRHVALHA-PSLALALFSHMHRTNVPF--DHFTFPLILKSSKL-----NPHCIHTLV 119

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K  F  ++++ N+LI+ Y   G L  +  +F  + ++D++SW+S+IS F + G      
Sbjct: 120 LKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGL----- 174

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK-NVNPDEFT 284
                                               P+EAL++F ++QL + ++ PD   
Sbjct: 175 ------------------------------------PDEALTLFQQMQLKESDILPDGVV 198

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            +SV+SA + LGA+++G+ +HA + + G+ L   L ++LIDMY++CG++D++++VF  + 
Sbjct: 199 MLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMP 258

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            R+V  W+ +I G A++G GREAL+ F  M E+ +KP+ + F  VL ACSH GLV+EGR 
Sbjct: 259 HRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRR 318

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            F+ M   YG+ P ++HY CMVD+LGRAG++ EA +F+E M + P + +W  LLGAC  H
Sbjct: 319 VFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNH 378

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
             + LAE A   + EL+P + G  VLLSN Y   G W     +R  MR S + KEPG S 
Sbjct: 379 NLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSL 438

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           + ++   H+F++G++SHP  +EI   L  ++  +K  GY P+  ++L  ++EE+ +E +L
Sbjct: 439 VHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEE-KEHSL 497

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HSE+LA+A+ L+     + IR++KNLR+C DCH+  K +S  ++R+I++RDR RFHHF
Sbjct: 498 GYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHF 557

Query: 645 RGGNCSCMDYW 655
           R G+CSC D+W
Sbjct: 558 RKGSCSCRDFW 568


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 346/625 (55%), Gaps = 60/625 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCALGTF-SSLEYAREMFDQIPQP 101
           L+ +   +   KQ H ++L +  L  DP   ++     AL    ++L +A      +P P
Sbjct: 17  LLPRLTTLSHYKQFHARLLSSAVLHLDPSLRARFLDRLALSDHPAALPHALLFLRSLPSP 76

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP----NEFTFPFVIKAAARLVQFRV 157
               +N  +R  ++S  P +S ++    +  SP  P    +  +  F +KA+AR      
Sbjct: 77  ATNDFNAALRGLAASPHPARSLLLLAGRLLPSPSPPPPRLDALSLSFALKASARCSDGTA 136

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
              +H ++++     D+ +  +L+  YA CGDLA A  VF  +  +DV SWN++++G  Q
Sbjct: 137 TLQLHALLLRLGCTPDVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQ 196

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL----- 272
           G                                           P  AL++FH L     
Sbjct: 197 G-----------------------------------------TEPTLALALFHRLVGSFR 215

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
           +L     P+E T V+ LSACAQ+G++  G+ +H   +K G+  N  +  +LIDMY+KCG+
Sbjct: 216 ELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMYSKCGS 275

Query: 333 LDKALEVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           LD ALEVFH++K  D  +  ++T I   +M+G G +AL LF  M    ++P+ VT+  VL
Sbjct: 276 LDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMP-TFIEPDEVTYIAVL 334

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
           C C+H+GLVD+G   F+ M     V+P VKHY  +VD+LGRAG L EA + I  MP    
Sbjct: 335 CGCNHAGLVDDGLRVFHSMR----VLPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPAD 390

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LLGA K H +VELAE A + L EL     G  VLLSN+YA   +W +V  +R  
Sbjct: 391 IVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKARWADVRRVRDT 450

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           MR + ++K PG S  E++G +HKF+ G+  HP  +EIY  L+EIV+R+   GY P  S++
Sbjct: 451 MRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRIGELGYEPETSNV 510

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  + EE+ ++ AL+ HSE+LAIA+GLI+  P + +R++KNLR CGDCH VAKLISK Y 
Sbjct: 511 LHDIGEEE-KQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCHVVAKLISKAYG 569

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R I++RDR RFH F  G CSC DYW
Sbjct: 570 RVIIIRDRARFHQFEDGQCSCKDYW 594


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/636 (33%), Positives = 349/636 (54%), Gaps = 77/636 (12%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           +K  +QIH  +++ G     +  S L    + +G  S    AR++FD++P+ N+  +NTL
Sbjct: 159 VKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISC---ARKVFDELPEKNVVMYNTL 215

Query: 110 IRAYSSSAEPIQSFMIFLQL--------------------------VYNSPYFPN----E 139
           I           S  +F ++                          ++      N    +
Sbjct: 216 IMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQ 275

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           +TF  V+ A   ++  + G+ +H  +I++ ++D++F++++L+  Y  C ++  A  VF  
Sbjct: 276 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKK 335

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           +  K+VVSW +M+ G+ Q G+ E                                     
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSE------------------------------------- 358

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
               EA+  F ++Q    + PD+FT  SV+S+CA L +++ G Q HA+    G+     +
Sbjct: 359 ----EAVKTFSDMQ-KYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITV 413

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           + +L+ +Y KCG+++ +  +F+ +  +D   W+ +++G+A +G   E + LF  M    +
Sbjct: 414 SNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGL 473

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           KP+ VTF  VL ACS +GLV++G   F  M   +G+VP   HYTCM+D+  RAG ++EA 
Sbjct: 474 KPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEAR 533

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
            FI KMP  P A  W  LL +C+ + N+++ ++A   L+EL+P N  + VLLS++YA  G
Sbjct: 534 NFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKG 593

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           KW+ V+ LRK MR  GL+KEPGCS I+   ++H F A + S+P   +IYS+L+++  ++ 
Sbjct: 594 KWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMI 653

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GYVP+ + +L  V + + + + LN HSE+LAIA+GL+ + P  PIR+VKNLRVC DCH
Sbjct: 654 KEGYVPDMNSVLHDVGDSE-KIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCH 712

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              K ISK+ NREIL+RD  RFH F+ G CSC D+W
Sbjct: 713 NATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 124/281 (44%), Gaps = 40/281 (14%)

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   + +H  +IK+    + F+ N+LI  YA  G +  A  VF  +   ++ SWN+++S
Sbjct: 24  NFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS 83

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            + + G   +   L+  M     + D V+  +++S  A       G       +    L+
Sbjct: 84  AYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAG-----CGLIYQSVKAYNLMLK 134

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK---- 329
              + N +  TF ++L   ++ G + +G QIH  + K G     ++ + L+DMY+K    
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 330 ---------------------------CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
                                      CG ++ +  +F  ++ RD   W++MI GF   G
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             R+A+D+F  M+   ++ +  TF +VL AC     + EG+
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGK 295



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 34/195 (17%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF---- 340
           + ++L  C +         +H+ + K       +L  +LI  Y K G++  A +VF    
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 341 -------HTVKS--------------------RDVFVWSTMIAGFAMYGCGREALDLFSR 373
                  +T+ S                    RD   W+++I+G+A  G   +++  ++ 
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 374 M--QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
           M   +     N +TF+ +L   S  G V  GR     +   +G +  V   + +VDM  +
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVK-FGFMSYVFVGSPLVDMYSK 190

Query: 432 AGLLDEAVEFIEKMP 446
            G++  A +  +++P
Sbjct: 191 MGMISCARKVFDELP 205


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/622 (37%), Positives = 341/622 (54%), Gaps = 57/622 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ-IPQ 100
           SL+ +  +++   Q H ++L +G L   P   ++     AL    +      +  + +P 
Sbjct: 12  SLLPRLASLRHYLQFHARLLTSGHLGAHPGLRARFLDRLALSPHPAALPHALLLLRSLPT 71

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQFRVGQ 159
           P     N  +R  ++S  P +S ++    +  +    P+  +  F +KA+AR        
Sbjct: 72  PATNDLNAALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTV 131

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +H +V++     D+ +  +L+  YA CGDLA A  VF  +  +DV +WNS+++G  QG 
Sbjct: 132 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG- 190

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL-----QL 274
                                                     PN AL++FH L     +L
Sbjct: 191 ----------------------------------------TEPNLALALFHRLANSFQEL 210

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                P+E T V+ LSACAQ+G +  G+ +H   K+ G+  N  +  SLIDMY+KCG+L 
Sbjct: 211 PSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLS 270

Query: 335 KALEVFHTVKSRD--VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           +AL+VFH++K  D  +  ++  I   +M+G G +AL LF  M   +++P+ VT+  VLC 
Sbjct: 271 RALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEPDGVTYLAVLCG 329

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+HSGLVD+G   FN M     V P +KHY  +VD+LGRAG L EA + +  MP      
Sbjct: 330 CNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIV 385

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           +W  LLGA K+H  VELAE A + L EL     G  VLLSN+YA   +W +V  +R  MR
Sbjct: 386 LWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMR 445

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
            + ++K PG S  E++G +HKF+ G+  HP  +EIY  L++IV+R+   GY P  S++L 
Sbjct: 446 SNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLH 505

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            + EE+ Q  AL  HSE+LAIA+GLI+  P + +R++KNLR+CGDCH VAKLISK Y R 
Sbjct: 506 DIGEEEKQ-YALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRV 564

Query: 633 ILLRDRYRFHHFRGGNCSCMDY 654
           I++RDR RFH F  G CSC DY
Sbjct: 565 IVIRDRARFHRFEDGQCSCRDY 586


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 330/570 (57%), Gaps = 44/570 (7%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S +E +R++F  + + +  +W  +I  ++ +    ++  +F ++   +    +++TF  V
Sbjct: 222 SRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEM-DQYTFGSV 280

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A   ++  + G+ +H  +I++ ++D++F+ ++L+  Y  C  +  A  VF  +  K+V
Sbjct: 281 LTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNV 340

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSW +M+ G+ Q G+ E                                         EA
Sbjct: 341 VSWTAMLVGYGQNGYSE-----------------------------------------EA 359

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + IF ++Q +  + PD+FT  SV+S+CA L +++ G Q H +    G+     ++ +L+ 
Sbjct: 360 VKIFCDMQ-NNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVT 418

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           +Y KCG+++ +  +F  +   D   W+ +++G+A +G   E L LF  M     KP+ VT
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL ACS +GLV +G   F  M   + ++P   HYTCM+D+  RAG L+EA +FI KM
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM 538

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P A  W +LL +C+ H N+E+ ++A   LL+LEP N  + +LLS+IYA  GKW+ V+
Sbjct: 539 PFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVA 598

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            LRK MR  GL+KEPGCS I+   ++H F A + S+P   +IYS+L+++  ++   GYVP
Sbjct: 599 NLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVP 658

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + + +L  V++ + + + LN HSE+LAIA+GLI + P  PIR+VKNLRVCGDCH   K I
Sbjct: 659 DMNSVLHDVDDSE-KIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYI 717

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK+  REIL+RD  RFH F+ G CSC D+W
Sbjct: 718 SKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 130/279 (46%), Gaps = 41/279 (14%)

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           R  + IH  +IK+    ++F+ N+L+  YA    +  A  VF  + ++++ SWN+++S +
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            +     +   ++  M       D V+  +++SA A +  L       +++  ++ +  +
Sbjct: 86  SKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLL------QSVKAYNLMLYN 135

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK------ 329
              N +     ++L   ++ G + +G+Q+H  + K G +   ++ + L+DMY+K      
Sbjct: 136 GPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFC 195

Query: 330 -------------------------CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
                                    C  ++ + ++F+ ++ +D   W+ MIAGF   G  
Sbjct: 196 ARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLD 255

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           REA+DLF  M+   ++ +  TF +VL AC     + EG+
Sbjct: 256 REAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGK 294


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 336/612 (54%), Gaps = 58/612 (9%)

Query: 52  KQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQ-----IPQPNLYT 105
           ++  Q+H  +LRTGL    P + +  F   A  +  S   A  + D         P+ + 
Sbjct: 34  RRFLQLHAHLLRTGLLALSPVTTTAAFLSLAAASLPS-HRALAVLDHHLTAASSLPSTFQ 92

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
            N+++R  S  ++ ++    FL+ +       N FT   ++K    L   R    +H  V
Sbjct: 93  CNSILRVLSDPSDALR----FLRRMRALGRRGNAFTLAILLKPRCALAHAR---QLHANV 145

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +      D  ++ SL+  YA  GD   A  +F  +  +D V+WN +IS            
Sbjct: 146 VAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLIS------------ 193

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ-LSKNVNPDEFT 284
                                   CA+ R  +      +AL +F E++       PD+ T
Sbjct: 194 -----------------------CCARNRRTK------DALKLFEEMRGRDSGAEPDDVT 224

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            + +L AC  LGA+D G Q+ A  ++ G      +  SLI MY++CG +DKA  VF    
Sbjct: 225 CILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTP 284

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            + V  WS MI+G A  G G +A+  F  M  + V P+  TFT VL ACSHSGLVDEG  
Sbjct: 285 QKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 344

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKI 463
           FF+ M   YG+ P V+HY C+VD++GRAGLLDEA E +  +M + P A++W  LLGAC+I
Sbjct: 345 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRI 404

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H +V+L E   S+L+EL+ +  G  VLL N YA  G+W  VSE+RK M+  G++  PGC+
Sbjct: 405 HGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCT 464

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
           ++E NGE+++F+A + +HP   EIY KL+EI  +L+  GYVPN S  L  ++ E  +E A
Sbjct: 465 TVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSELHDLDSEG-KESA 523

Query: 584 LNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHH 643
           L  HSE+LAIA+ L+    ++PIR+ KNLRVC DCH   K+ S +YNR +++RDR RFHH
Sbjct: 524 LTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHH 583

Query: 644 FRGGNCSCMDYW 655
           F+GG CSC DYW
Sbjct: 584 FQGGKCSCNDYW 595



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 145/334 (43%), Gaps = 33/334 (9%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           L+K    +   +Q+H  ++  G   D   A+ L    A       + AR++F ++P  + 
Sbjct: 128 LLKPRCALAHARQLHANVVAEGHLRDALLATSLMACYA--NRGDGDGARKLFGEMPARDA 185

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
             WN LI   + +     +  +F ++   +S   P++ T   +++A   L     G+ + 
Sbjct: 186 VAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVW 245

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
               +  +   L + NSLI  Y+ CG +  AY VF    +K VV+W++MISG    GF +
Sbjct: 246 AYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGD 305

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKK------------RDLEFGRWPN------- 263
            AI  + EM   +V PDE T   VLSAC+                 E+G  PN       
Sbjct: 306 DAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCI 365

Query: 264 -----EALSIFHELQLSKN---VNPDEFTFVSVLSACAQLGAMDIGVQIHAKM-KKQGIK 314
                 A  +    +L  N   V PD   + ++L AC   G +D+G ++ + + + +  +
Sbjct: 366 VDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQ 425

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
              Y+   L++ Y   G   K  EV   ++ + +
Sbjct: 426 AGDYVL--LLNTYAAVGEWSKVSEVRKLMQEKGI 457


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/663 (34%), Positives = 349/663 (52%), Gaps = 70/663 (10%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY- 113
           +++H  +L+ G   +    + L      G   S   A  +F QI + +  +WN+++  Y 
Sbjct: 287 RELHAALLKCGSELNIQCNALLVMYAKYGRVDS---ALRVFGQIAEKDYISWNSMLSCYV 343

Query: 114 --SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
             S  AE I  F   LQ      + P+      +  A   L +   G+  H   IK    
Sbjct: 344 QNSFYAEAIDFFGEMLQ----HGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLH 399

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            DL + N+L+  Y  CG +  +  VF  +G +D +SW ++++ F Q     +A+E+  E+
Sbjct: 400 TDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILEL 459

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGR---------------WPNEALSIF------- 269
           + E +  D + + ++L  C   + +   +                 N  + I+       
Sbjct: 460 QKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFD 519

Query: 270 HELQLSKNV------------------------------------NPDEFTFVSVLSACA 293
           H L L + V                                     PD    VS+L A A
Sbjct: 520 HSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIA 579

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            L ++  G Q+H  + ++   +   + +SL+DMY+ CG+++ A+ VF   K +DV +W+ 
Sbjct: 580 GLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTA 639

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI    M+G G++A+DLF RM +  + P+ V+F  +L ACSHS LV+EG+ + + M   Y
Sbjct: 640 MINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKY 699

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473
            + P  +HY C+VD+LGR+G  +EA EFI+ MP+ P ++VW ALLGAC++H N  LA  A
Sbjct: 700 RLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVA 759

Query: 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHK 533
            + LLELEP+N G  +L+SN++A+ GKW+N  E R  M   GL+K P CS IE+   IH 
Sbjct: 760 ANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHT 819

Query: 534 FLAGESSHPLCKEIYSKLDEIVARL-KSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           F +G+  H   + I+ KL EI   L +  GYV +   +L    EE+ +   L+ HSER+A
Sbjct: 820 FTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEE-KIDMLHKHSERIA 878

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+GLIS  P  PIRI KNLRVCGDCH   KL+SKL+ R+I++RD  RFHHF GG+CSC 
Sbjct: 879 IAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCE 938

Query: 653 DYW 655
           D+W
Sbjct: 939 DFW 941



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 138/604 (22%), Positives = 255/604 (42%), Gaps = 112/604 (18%)

Query: 35  QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF---DPYSASKLFTPCALGTFSSLEYA 91
           + H   V  L+   +   + +Q+H   + TG      D + A+KL      G    ++ A
Sbjct: 57  REHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVF--MYGRCGRVDDA 114

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP--YFPNEFTFPFVIKAA 149
           R +F+ +P   +++WN L+ AY SS    ++  ++  +  ++     P+  T   V+KA 
Sbjct: 115 RRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC 174

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVS 207
                 R G  +HG+ +K   +    ++N+LI  YA CG L  A  VF  + +  +DV S
Sbjct: 175 GAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVAS 234

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV-------------------LS 248
           WNS++SG VQ G   +A+ L+R M+      +  T VAV                   L 
Sbjct: 235 WNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALL 294

Query: 249 ACAKKRDLE----------FGR------------------WPN------------EALSI 268
            C  + +++          +GR                  W +            EA+  
Sbjct: 295 KCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDF 354

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           F E+ L     PD    VS+ SA   L  ++ G + HA   KQ +  +  +  +L+DMY 
Sbjct: 355 FGEM-LQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYI 413

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG+++ + +VF ++  RD   W+T++A FA      EAL++   +Q+  +  +++   +
Sbjct: 414 KCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGS 473

Query: 389 VLCACSHSGLVDEGRMFFNQMEPV--YGVVPGVKHYTC---MVDMLGRAGLLDEAVEF-- 441
           +L  C        G    + ++ V  Y +  G+        ++D+ G  G  D ++    
Sbjct: 474 ILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQ 526

Query: 442 -IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            +EK  IV     W +++  C  +  +                 +GA+ L + +     +
Sbjct: 527 RVEKKDIVS----WTSMINCCTNNGRL-----------------NGAVFLFTEMQKANIQ 565

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
            D+V+ +   + ++GL      SS+    ++H FL    + P+   + S L ++ +   S
Sbjct: 566 PDSVALVSILVAIAGL------SSLTKGKQVHGFLI-RRNFPIEGPVVSSLVDMYSGCGS 618

Query: 561 FGYV 564
             Y 
Sbjct: 619 MNYA 622



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN----CYLTTSLIDMYT 328
           QL+    P    +  VL   A   A   G Q+HA     G  LN     +L T L+ MY 
Sbjct: 48  QLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTG-SLNEDDDGFLATKLVFMYG 106

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV---KPNAVT 385
           +CG +D A  +F+ + +R VF W+ ++  +   G   EA+ ++  M+ +      P+  T
Sbjct: 107 RCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCT 166

Query: 386 FTNVLCACSHSGLVDEGRMF--FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
             +VL AC   G   +GR     + +    G+         ++ M  + GLLD A+   E
Sbjct: 167 LASVLKACGAEG---DGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFE 223

Query: 444 KM-PIVPGASVWGALLGAC 461
            +       + W +++  C
Sbjct: 224 WLQQDARDVASWNSVVSGC 242


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 339/576 (58%), Gaps = 19/576 (3%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNS--PYFPNEFT 141
           + L YA  +F  +  P+ +    L+R    +  P+++F +F  L+  + S  P+ P  F+
Sbjct: 102 APLRYAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRLFSRLRCAHGSDLPFLPFAFS 161

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
            P    AAA         A    ++   F+   F+ NSLI  Y  CGD+  A  VF  + 
Sbjct: 162 -PLAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDVGAARKVFDEML 220

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            KDV+SW S++  + +      A E++    ++    D V   A+++  A+         
Sbjct: 221 VKDVISWTSIVVAYSRIRDMGSAEEVFALCPVK----DMVAWTAMVTGYAQNA------M 270

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P +AL  F ++ ++  +  DE +    +SACAQLGA+     +    ++ G+  N  + +
Sbjct: 271 PVKALEAFEQMAVA-GMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGS 329

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVK 380
            L+DMY KCG +D+A +VF  +  ++V+ +S+MI G A +G   + + LF+ M + A V+
Sbjct: 330 GLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVE 389

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN VTF  VL ACSH+G+V EGR +F QM+  YG++P   HY CMVD+L R+GL+ EA++
Sbjct: 390 PNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALD 449

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            ++ M + P   VWGALLGAC+IH N E+A+ A  HL  LEPE  G  VLLSN  A  G+
Sbjct: 450 LVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLASAGE 509

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           WD VS+LRK MR+ GLKK+P  S  E  +G +H+F AG+++HP   EI  +L E+  +L 
Sbjct: 510 WDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLLELREKLN 569

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             GYVP  S ++  V EE+ +E+ L  HSE+LA+++GL+++E    IRIVKNLR+C DCH
Sbjct: 570 LAGYVPILSSVVYNVSEEE-KERLLMGHSEKLALSFGLLTLESRSSIRIVKNLRICEDCH 628

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              +L+SK+   EIL+RD  RFHHFR G CSC  +W
Sbjct: 629 LFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 359/639 (56%), Gaps = 60/639 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PNPT  T         H + S  +Q  ++     +H +++ +G   DP+ A+KL      
Sbjct: 74  PNPTQRTFE-------HLICSCAQQ-NSLSDGLDVHRRLVSSGFDQDPFLATKLIN--MY 123

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE-FT 141
               S++ AR++FD+  +  +Y WN L RA +      +   +++Q+  N    P++ FT
Sbjct: 124 YELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQM--NWIGIPSDRFT 181

Query: 142 FPFVIKAAA----RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FV+KA       +   + G+ IH  +++  +E ++ +  +L+  YA  G ++ A  VF
Sbjct: 182 YTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVF 241

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  K+ VSW++MI                                    AC  K ++ 
Sbjct: 242 CAMPTKNFVSWSAMI------------------------------------ACFAKNEM- 264

Query: 258 FGRWPNEALSIFHELQL-SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
               P +AL +F  + L + +  P+  T V+VL ACA L A++ G  IH  + ++G+   
Sbjct: 265 ----PMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSI 320

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             +  +LI MY +CG +     VF  +K+RDV  W+++I+ + M+G G++A+ +F  M  
Sbjct: 321 LPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIH 380

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
               P+ ++F  VL ACSH+GLV+EG++ F  M   Y + PG++HY CMVD+LGRA  LD
Sbjct: 381 QGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLD 440

Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
           EA++ IE M   PG +VWG+LLG+C+IH NVELAE A + L ELEP N G  VLL++IYA
Sbjct: 441 EAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYA 500

Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
           +   W     + K +   GL+K PGCS IEV  +++ F++ +  +P  +EI++ L ++  
Sbjct: 501 EAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSN 560

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
            +K+ GYVP  + +L  ++EE+ +   L  HSE+LA+A+GLI+    + IRI KNLR+C 
Sbjct: 561 EMKAQGYVPQTNVVLYDLDEEEKERIVLG-HSEKLAVAFGLINTVKGETIRIRKNLRLCE 619

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH V K ISK  NREIL+RD  RFHHF+ G CSC DYW
Sbjct: 620 DCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/642 (36%), Positives = 360/642 (56%), Gaps = 38/642 (5%)

Query: 35  QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGL------FFDPYSASKLFTPCALGTF 85
           Q  P    SL++ C     L   K++H  +L +GL       F   +   L+  C  G  
Sbjct: 12  QSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASC--GVT 69

Query: 86  SSLEYAREMFDQIPQP--NLYTWNTLIRAY-SSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
           SS   AR +F QIP+   ++  W TL+ +      +P + F  F ++        ++   
Sbjct: 70  SS---ARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVL-DDVAM 125

Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
             V     R+    +G+   G ++K      + + N++++ Y  CG +     VF  + +
Sbjct: 126 ISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNE 185

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           ++VVSW++++ G V+    E    ++ EM   N    EV    +++         F R  
Sbjct: 186 RNVVSWSTLLEGVVKWEGVENGRVVFDEMPERN----EVGWTIMIAGYVGN---GFSR-- 236

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTT 321
            E   +  E+ L   +  +  T  S+LSACAQ G + +G  +H   +K  G +++  + T
Sbjct: 237 -EGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGT 295

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY KCG +D A +VF  +  R+V  W+ M+ G AM+G G+  LD+F +M E + KP
Sbjct: 296 ALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIE-EAKP 354

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + +TF  VL ACSHSGLVD+G  +F  +E  YG  P ++HY CMVD+LGRAG L+EAV  
Sbjct: 355 DDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVML 414

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+KMP+ P   V G+LLG+C  H  ++L E     L++++  N    VLLSN+Y   GK 
Sbjct: 415 IKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQ 474

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           D  + LR+ ++  G++K PG SSI V G IH+F AG+ SHPL KEIY  L+ ++ RL+  
Sbjct: 475 DKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLA 534

Query: 562 GYVPNRSHLL--------QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           GYVPN ++ +           EE + +EQAL LHSE+LA+ +G IS +P  P+ I KNLR
Sbjct: 535 GYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLR 594

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +C DCH+  K++SK+YNREI++RDR RFH F+ G+CSC DYW
Sbjct: 595 ICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 344/628 (54%), Gaps = 60/628 (9%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTF----SSLEYAREMF 95
           S++  C +++ L   K+IH  +L      +       F  CAL          E  R +F
Sbjct: 292 SVLPACSHLEMLGCGKEIHAFVLMNNDLIE-----NSFVGCALVDMYCNCKQPEKGRLVF 346

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D + +  +  WN +I  Y  +    ++  +F+++V+     PN  T   V+ A  R   F
Sbjct: 347 DGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF 406

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
              + IH  V+K  FE D ++ N+L+  Y+  G + +A  +F  + +KD+VSWN+MI+G+
Sbjct: 407 LDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGY 466

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V  G  + A+ L  +M+                  A+ R           ++ F + + +
Sbjct: 467 VVCGRHDDALNLLHDMQ---------------RGQAEHR-----------INTFDDYEDN 500

Query: 276 KN--VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           KN  + P+  T ++VL  CA L A+  G +IHA   KQ +  +  + ++L+DMY KCG L
Sbjct: 501 KNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCL 560

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-----KVKPNAVTFTN 388
           + +  VF  +  R+V  W+ +I  + M+G G EAL LF RM E      +++PN VT+  
Sbjct: 561 NLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIA 620

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI- 447
           +  + SHSG+VDEG   F  M+  +G+ P   HY C+VD+LGR+G ++EA   I+ MP  
Sbjct: 621 IFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSN 680

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
           +     W +LLGACKIH+N+E+ E A  +L  L+P          N+     K    S L
Sbjct: 681 MKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP----------NVLDYGTKQ---SML 727

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
            + M+  G++KEPGCS IE   E+HKFLAG+ SHP  KE++  L+ +  R+K  GYVP+ 
Sbjct: 728 GRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDT 787

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +L  V EE+ +E  L  HSERLAIA+GL++  P   IR+ KNLRVC DCH   K ISK
Sbjct: 788 SCVLHNVGEEE-KETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISK 846

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + +REI+LRD  RFHHFR G CSC DYW
Sbjct: 847 IVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 192/444 (43%), Gaps = 84/444 (18%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLI 110
           KQ+H  +LR G +       + FT  AL T       +  A+ +FD     +L +WNT+I
Sbjct: 207 KQVHAFVLRNGDW-------RTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTII 259

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI-KSS 169
            + S + +  +  +++L ++  S   PN  T   V+ A + L     G+ IH  V+  + 
Sbjct: 260 SSLSQN-DRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
             ++ F+  +L+  Y  C        VF  + ++ +  WN+MI+G+V+  F  +AIEL+ 
Sbjct: 319 LIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFV 378

Query: 230 EMEME-NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
           EM  E  + P+ VT+ +VL AC +                     L K            
Sbjct: 379 EMVFELGLSPNSVTLSSVLPACVRCESF-----------------LDKE----------- 410

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
                          IH+ + K G + + Y+  +L+DMY++ G ++ A  +F ++  +D+
Sbjct: 411 --------------GIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDI 456

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAK------------------VKPNAVTFTNVL 390
             W+TMI G+ + G   +AL+L   MQ  +                  +KPN+VT   VL
Sbjct: 457 VSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVL 516

Query: 391 CACSHSGLVDEGRMF----FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
             C+    + +G+        QM     +   V   + +VDM  + G L+ +    E+M 
Sbjct: 517 PGCAALAALGKGKEIHAYAVKQM-----LSKDVAVGSALVDMYAKCGCLNLSRTVFEQMS 571

Query: 447 IVPGASVWGALLGACKIHENVELA 470
            V     W  L+ A  +H   E A
Sbjct: 572 -VRNVITWNVLIMAYGMHGKGEEA 594



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 155/349 (44%), Gaps = 61/349 (17%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W + +R+ + S+      +     +  +   P+ F FP V+KA A +    +G+ +H  V
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
            K        + NSL++ Y  CGD+  A  VF  I  +D VSWNSMI+   +   +E A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRD------------LEFGRW----PNEALSIF 269
            L+R M +ENV P   T+V+V  AC+   +            L  G W     N  ++++
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMY 231

Query: 270 HEL--------------------------QLSKN-----------------VNPDEFTFV 286
            +L                           LS+N                 V P+  T  
Sbjct: 232 AKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLA 291

Query: 287 SVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           SVL AC+ L  +  G +IHA  +    +  N ++  +L+DMY  C   +K   VF  +  
Sbjct: 292 SVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFR 351

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCAC 393
           R + VW+ MIAG+       EA++LF  M  E  + PN+VT ++VL AC
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 260 RWPNEALSIFHEL------QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
           R   ++ S FH+        ++  V PD F F +VL A A +  +++G Q+HA + K G 
Sbjct: 57  RSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQ 116

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
            L   +  SL++MY KCG++D A  VF  + +RD   W++MI     +     A+ LF  
Sbjct: 117 ALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRL 176

Query: 374 MQEAKVKPNAVTFTNVLCACSH 395
           M    V P + T  +V  ACS+
Sbjct: 177 MLLENVGPTSFTLVSVAHACSN 198


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/617 (35%), Positives = 348/617 (56%), Gaps = 55/617 (8%)

Query: 45  IKQCKNIKQL---KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQI 98
           ++ C   K L   K  H   +  GL  D  + +    L+T C        + AR +FD +
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRN-----DCARLVFDIM 118

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
              ++ +WNT+I  Y+ S E +Q+  +F ++     +  +EFT    I A A        
Sbjct: 119 HVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHM-SEFTLSSTICACAAKYAINEC 177

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H + +K + + + F+  +++  YA C  +  A  VF  + ++ +V+W+S+ +G+VQ 
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQN 237

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E+A+ L+R                    CA++  +E                     
Sbjct: 238 GLHEEALHLFR--------------------CAQREGVEL-------------------- 257

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
              EFT  ++LSACA L     G+Q+HA + K G   N ++  SL+D+Y +CG ++KA  
Sbjct: 258 --TEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYA 315

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  ++ ++V +W+ MIA F+ +    EA+ LF +MQ+  + PN VT+ +VL  CSH+GL
Sbjct: 316 LFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGL 375

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V++GR +F+ +     V P V HY+CMVD+LGR+G  DEA E + KMP  P AS+WG+LL
Sbjct: 376 VEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLL 435

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           G+C+ + N+ LA  A   L +LEP+N G  VLLSN+YA +G W+NV   RK+++ SG KK
Sbjct: 436 GSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKK 495

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           E G S IE  G++H F+ GE  HP   +IY+KL+EI   ++ F    +    L  V  E 
Sbjct: 496 EMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQ 555

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E+ L  HSE+LA+++GLIS+  + PI I KNLR+CGDCH+  K+ + +  R +++RD 
Sbjct: 556 -KEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDT 614

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF+ G+CSC D+W
Sbjct: 615 NRFHHFKDGSCSCGDFW 631


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 334/610 (54%), Gaps = 68/610 (11%)

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN L+ A+S +  P  +  +F  L   S   PN  TF   + A ARL      +++    
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRAL--PSSARPNSTTFTLTLTACARLGDLDAAESVRVRA 133

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
             + +  D+F+ ++L+H Y+ CG +  A  VF  + +KD V+W++M++GFV  G   +A+
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 226 ELYREMEMENVKPDE-----------------------------------VTMVAVLSAC 250
            +Y  M    V  DE                                   VT  +++S  
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMY 253

Query: 251 AKKRDLEFG-------------RWPN------------EALSIFHELQLSKNVNPDEFTF 285
           AK   L+                W              EAL +F ELQ +  + P  +  
Sbjct: 254 AKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQ-ADGLQPCSWAL 312

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           VS L ACA +G + +G  IH  + ++ ++  C L T+++DMY+KCG+L+ A ++F+ + S
Sbjct: 313 VSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSS 371

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           RD+ +W+ +IA    +GCG +AL LF  + E  +KP+  TF ++L A SHSGLV+EG+ +
Sbjct: 372 RDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFW 431

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F++M   +G+ P  KHY C+VD+L R+GL++EA + +  M   P  ++W  LL  C  ++
Sbjct: 432 FDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNK 491

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
            +EL E     +LEL PE+ G L L+SN+YA   KWD V E+RK M+ SG KK PG S I
Sbjct: 492 KLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLI 551

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           EV G  H F+  + SHP  +EI   + ++ + ++  GYVP    +   ++E    +Q L+
Sbjct: 552 EVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDE----DQLLS 607

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSERLAIA+GL++  P   + I+KNLRVCGDCH   K ISK+ +REI++RD  RFHHF+
Sbjct: 608 YHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFK 667

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 668 DGACSCGDYW 677


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 299/522 (57%), Gaps = 47/522 (9%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P    +  ++++       + G+ +H  V  + F  D  I+  L++ Y +C  L+ A  +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  I K ++  WN +I G+   G +E A++LY +M                         
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM------------------------F 168

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
           ++G                  + PD FTF  VL ACA L A++ G +IH  + + G + +
Sbjct: 169 DYG------------------LVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGCGREALDLFSR 373
            ++  +LIDMY KCG +  A EVF  +  RD   V  W+ MI G+AM+G   EALDLF  
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEE 270

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433
           M     KP+ +TF  VL ACSH GL++EG MFF  M   Y + P V+HYTCMVD+LG +G
Sbjct: 271 MNRV-AKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 329

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
            LDEA   I +M ++P + VWGALL +CKIH NVEL E A   L+ELEP++ G  V+LSN
Sbjct: 330 RLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSN 389

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           IYA+ GKW+ V++LRK M    LKK   CS IEV  ++H FL+G++SHPL  EIYS+L+ 
Sbjct: 390 IYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELER 449

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           +   +K  GY P+   +   V E+D +   +  HSERLAIA+GLIS  P   + I KNLR
Sbjct: 450 VGGLMKEAGYSPSTGSVFHDV-EDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLR 508

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +C DCH   K ISK+  REI +RD  R+HHF+ G CSC DYW
Sbjct: 509 ICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 157/314 (50%), Gaps = 27/314 (8%)

Query: 3   DNPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHT 59
           DN   H++ +  P  S P H   T LT    +        SL++ C   K IK  KQ+H 
Sbjct: 49  DNNQTHLKAI--PSCSNP-HAESTCLTPTYSNYA------SLLQSCIARKAIKPGKQLHA 99

Query: 60  QMLRTGLFFDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE 118
           Q+   G  FD   A+KL    C   + SS   AR +FD+IP+ N++ WN LIR Y+ +  
Sbjct: 100 QVCLAGFGFDTVIATKLVNLYCVCDSLSS---ARLLFDRIPKHNIFLWNVLIRGYAWNGP 156

Query: 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISN 178
              +  ++ Q+ ++    P+ FTFPFV+KA A L     G+ IH  V+++ +E D+F+  
Sbjct: 157 YEAAVQLYYQM-FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGA 215

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKD---VVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           +LI  YA CG +  A  VF  I  +D   VVSWN+MI+G+   G   +A++L+ EM    
Sbjct: 216 ALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMN-RV 274

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
            KPD +T V VLSAC+    LE      E    F  +     ++P    +  ++      
Sbjct: 275 AKPDHITFVGVLSACSHGGLLE------EGWMFFETMIRDYKIDPTVQHYTCMVDLLGHS 328

Query: 296 GAMDIGVQIHAKMK 309
           G +D    +  +MK
Sbjct: 329 GRLDEAYNLIMQMK 342



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S  + P    + S+L +C    A+  G Q+HA++   G   +  + T L+++Y  C +L 
Sbjct: 68  STCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLS 127

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A  +F  +   ++F+W+ +I G+A  G    A+ L+ +M +  + P+  TF  VL AC+
Sbjct: 128 SARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA 187

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV- 453
               ++ GR     +    G    V     ++DM  + G +  A E  +K+ +     V 
Sbjct: 188 ALSAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVV 246

Query: 454 -WGALLGACKIH 464
            W A++    +H
Sbjct: 247 SWNAMITGYAMH 258


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 350/618 (56%), Gaps = 32/618 (5%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++  C +   LK    +H ++LR     D    + L   +  C       L+ A+ +F 
Sbjct: 283 SVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCG-----CLDLAKRVFK 337

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            + + +  +WN+LI           + ++F Q+  +S    +EF  P ++   +      
Sbjct: 338 SLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVL-DEFILPTILGVCSGPDYAS 396

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +HG  IKS       + N++I  YA CGD   A  VF ++  ++ +SW +MI+ F 
Sbjct: 397 TGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFS 456

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           + G   KA   +  M   N+    VT  ++LS   +        +  E L ++  ++ S 
Sbjct: 457 RSGDIGKARGYFDMMPERNI----VTWNSMLSTYVQNG------FSEEGLKLYVSMR-SN 505

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V PD  TF + + ACA L  + +G+Q+     K G+ LN  +  S++ MY++CG + +A
Sbjct: 506 GVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEA 565

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              F ++  +D+  W+ M+A FA  G G + +D F  M + + KPN +++ +VL  CSH 
Sbjct: 566 KNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHM 625

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV EG+ +F+ M  V+G+ P  +H++CMVD+LGRAGLL++A + IE MP  P A+VW A
Sbjct: 626 GLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSA 685

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLG+C++H ++ LAE A   L+EL+ E     VLLSN+Y+++G+ DNV+++RK M+V G+
Sbjct: 686 LLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGI 745

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +   GCS IEV+  +H F   E+SHP  KE+Y KL+E++  ++  G         + +  
Sbjct: 746 RTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTG---------KYITV 796

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           E    ++   HSE+LA A+GL+++    PI ++KNLRVC DCH V KL+S + +RE+++R
Sbjct: 797 ESSVHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMR 856

Query: 637 DRYRFHHFRGGNCSCMDY 654
           D YRFHHF+ G CSC DY
Sbjct: 857 DGYRFHHFKDGICSCKDY 874



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 189/391 (48%), Gaps = 30/391 (7%)

Query: 81  ALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP---- 134
           AL + S +  A ++FD++P    +  +W T+I  YS +    +SF  F  ++ ++     
Sbjct: 83  ALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGK 142

Query: 135 -YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
            Y P  F+F  V+KA   L   R+   +H +V K  F  +  I NS++  Y  CGD+ +A
Sbjct: 143 NYDP--FSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLA 200

Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
             VF  I +  +  WNSMI G+ Q     KA++++  M     + DEV+   ++S  ++ 
Sbjct: 201 ETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMP----ERDEVSWNTLISIFSQH 256

Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
               FG    + L++F E+  ++  +P+  T+ SVLSACA    +  G  +HA++ +   
Sbjct: 257 ---GFGV---QCLAMFVEM-CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEH 309

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
            L+      LIDMY KCG LD A  VF +++  D   W+++I G   +G G +AL LF++
Sbjct: 310 SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQ 369

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY----TCMVDML 429
           M+ + V  +      +L  CS       G +        Y +  G+         ++ M 
Sbjct: 370 MRRSSVVLDEFILPTILGVCSGPDYASTGELLHG-----YTIKSGMGSSAPVGNAIITMY 424

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            + G  D+A      MP+    S W A++ A
Sbjct: 425 AKCGDTDKADLVFRLMPLRNTIS-WTAMITA 454



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 43/316 (13%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           + + +H  +I S  +  LF+ N+L+H Y+ CG    A+ VF     +++ +WN+MI   V
Sbjct: 26  IARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALV 85

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
                  A +L+ EM +  VK D V+   ++S  ++     F     E  S+        
Sbjct: 86  SSSRMSDAEKLFDEMPVR-VK-DSVSWTTMISGYSQN---GFHSRSFETFSLMIRDTNDG 140

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD-- 334
             N D F+F SV+ AC  LG   + +Q+HA + K G  +   +  S++ MY KCG++D  
Sbjct: 141 GKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLA 200

Query: 335 -----------------------------KALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
                                        KAL++F+ +  RD   W+T+I+ F+ +G G 
Sbjct: 201 ETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGV 260

Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN---QMEPVYGVVPGVKHY 422
           + L +F  M      PN +T+ +VL AC+ +  +  G        +ME    +V G    
Sbjct: 261 QCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFG---- 316

Query: 423 TCMVDMLGRAGLLDEA 438
             ++DM  + G LD A
Sbjct: 317 NGLIDMYAKCGCLDLA 332


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 339/571 (59%), Gaps = 27/571 (4%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSS--SAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
            EYAR++F++IPQPN  ++N ++  +         + F       ++S    +  ++  +
Sbjct: 89  FEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGF-------FDSMPLKDVASWNTM 141

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS-NSLIHFYAICGDLAMAYCVFVMIGKKD 204
           I A A+     VG       + S+  +   +S ++++  Y  CGDL  A   F     + 
Sbjct: 142 ISALAQ-----VGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRS 196

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           V++W +MI+G+++ G  E A  L++EM M  +    VT  A+++       +E GR   +
Sbjct: 197 VITWTAMITGYMKFGRVELAERLFQEMSMRTL----VTWNAMIAGY-----VENGR-AED 246

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
            L +F  + L   V P+  +  SVL  C+ L A+ +G Q+H  + K  +  +    TSL+
Sbjct: 247 GLRLFRTM-LETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLV 305

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY+KCG+L  A E+F  +  +DV  W+ MI+G+A +G G++AL LF  M++  +KP+ +
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWI 365

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF  VL AC+H+GLVD G  +FN M   +G+    +HY CMVD+LGRAG L EAV+ I+ 
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS 425

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP  P  +++G LLGAC+IH+N+ LAE+A  +LLEL+P      V L+N+YA   +WD+V
Sbjct: 426 MPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHV 485

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + +R+ M+ + + K PG S IE+N  +H F + +  HP    I+ KL ++  ++K  GYV
Sbjct: 486 ASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYV 545

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  V EE ++EQ L  HSE+LAIA+GL+ V    PIR+ KNLRVCGDCH+  K 
Sbjct: 546 PDLEFVLHDVGEE-LKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKY 604

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IS +  REI++RD  RFHHF+ G CSC DYW
Sbjct: 605 ISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 1/175 (0%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F  +E A  +F ++    L TWN +I  Y  +        +F  ++  +   PN  +   
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTML-ETGVKPNALSLTS 268

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           V+   + L   ++G+ +H +V K     D     SL+  Y+ CGDL  A+ +F+ I +KD
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           VV WN+MISG+ Q G  +KA+ L+ EM+ E +KPD +T VAVL AC     ++ G
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLG 383



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 61/329 (18%)

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG-GFFEKAIELYRE 230
           +++  SN LI  Y  CGD+  A  VF  +  K  V+WNS+++ F +  G FE A +L+ +
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRW----PNEALSIFHELQLSKNVNPDEFTFV 286
           +     +P+ V+   ++ AC          W     ++A   F  + L      D  ++ 
Sbjct: 99  IP----QPNTVSY-NIMLAC---------HWHHLGVHDARGFFDSMPLK-----DVASWN 139

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +++SA AQ+G M    ++ + M ++    NC   ++++  Y  CG+LD A+E F+    R
Sbjct: 140 TMISALAQVGLMGEARRLFSAMPEK----NCVSWSAMVSGYVACGDLDAAVECFYAAPMR 195

Query: 347 DVFVWSTMIAGFAMYG-----------------------------CGR--EALDLFSRMQ 375
            V  W+ MI G+  +G                              GR  + L LF  M 
Sbjct: 196 SVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTML 255

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           E  VKPNA++ T+VL  CS+   +  G+   +Q+     +       T +V M  + G L
Sbjct: 256 ETGVKPNALSLTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDL 314

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIH 464
            +A E   ++P       W A++     H
Sbjct: 315 KDAWELFIQIP-RKDVVCWNAMISGYAQH 342


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 339/609 (55%), Gaps = 65/609 (10%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           Q +N+     + T +LR+G+  D                     ++ +F  + + +  +W
Sbjct: 200 QERNVVMYNTMITGLLRSGMVKD---------------------SKRLFHGMKERDSISW 238

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
            T+I     +    ++  +F  +        +++TF  V+ A   L   + G+ IH ++I
Sbjct: 239 TTMITGLIQNGLEAEAMDLFRDMRQEGMAM-DQYTFGSVLTACGGLRALKEGKEIHTLII 297

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +S +  ++F+ ++L+  Y  C  +  A  VF  +  K+VVSW +M+ G+ Q GF E+A+ 
Sbjct: 298 RSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVR 357

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           ++                     C  +R+                      + PD+FT  
Sbjct: 358 VF---------------------CDMQRN---------------------GIEPDDFTLG 375

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           SV+S+CA L +++ G Q H +    G+     ++ +LI +Y KCG+++ + ++F  +  R
Sbjct: 376 SVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR 435

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D   W+ +++G+A +G   E +DLF RM    +KP+AVTF  VL ACS +GLV+ G+ +F
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYF 495

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M   +G++P   HYTCM+D+ GRAG L+EA  FI KMP  P +  W  LL +C+++ N
Sbjct: 496 ESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGN 555

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
            E+ ++A   LLEL+P+N    +LLS+IYA  GKW NV++LR+ MR  G +KEPG S I+
Sbjct: 556 EEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIK 615

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
              +++ F A + S P   +IY++L+++  ++   GYVP+ S +L  VE+ + + + LN 
Sbjct: 616 YKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSE-KMKMLNH 674

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE+LAIA+GL+ +    PIR+VKNLRVCGDCH   K ISK+  REIL+RD  RFH F+ 
Sbjct: 675 HSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKD 734

Query: 647 GNCSCMDYW 655
           G CSC D+W
Sbjct: 735 GTCSCGDFW 743



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 232/460 (50%), Gaps = 50/460 (10%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           + +N  Q K++H  ++++    + +  + L    A     ++ YAR +FD++PQPN ++W
Sbjct: 17  ETRNQTQAKKLHCLIIKSLTNPETFLYNNLIN--AYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 107 NTLIRAYSSSAEP---------------------IQSFMIFLQLV-----YNSPYFP--- 137
           NT++ AYS S +                      I  ++ +  +V     YNS       
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 138 --NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             N  TF  ++   +      +G+ IHG ++K  F   +F+ +SL+  YA  G +++A  
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF  + +++VV +N+MI+G ++ G  + +  L+  M+    + D ++   +++   +   
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK----ERDSISWTTMITGLIQN-G 249

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
           LE      EA+ +F +++  + +  D++TF SVL+AC  L A+  G +IH  + + G   
Sbjct: 250 LE-----AEAMDLFRDMR-QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH 303

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N ++ ++L+DMY KC ++  A  VF  + +++V  W+ M+ G+   G   EA+ +F  MQ
Sbjct: 304 NVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQ 363

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
              ++P+  T  +V+ +C++   ++EG  F  Q   V G++  +     ++ + G+ G +
Sbjct: 364 RNGIEPDDFTLGSVISSCANLASLEEGAQFHCQ-ALVSGLISFITVSNALITLYGKCGSI 422

Query: 436 DEAVEFIEKMPIVPGASVWGALLGA----CKIHENVELAE 471
           +++ +  ++M      S W AL+       K +E ++L E
Sbjct: 423 EDSNQLFDEMSFRDEVS-WTALVSGYAQFGKANETIDLFE 461



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 113/286 (39%), Gaps = 47/286 (16%)

Query: 32  NGHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSL 88
           NG +     + S+I  C N+  L+   Q H Q L +GL      ++ L T    G   S+
Sbjct: 365 NGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALIT--LYGKCGSI 422

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           E + ++FD++   +  +W  L+  Y+   +  ++  +F +++      P+  TF  V+ A
Sbjct: 423 EDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLK-PDAVTFIAVLSA 481

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            +R      GQ          + + +   + +I F                        +
Sbjct: 482 CSRAGLVERGQ---------QYFESMLKDHGIIPFSD---------------------HY 511

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
             MI  F + G  E+A     +M      PD +    +LS+C    + E G+W  E+L  
Sbjct: 512 TCMIDLFGRAGRLEEAKNFINKMPFS---PDSIGWATLLSSCRLYGNEEIGKWAAESL-- 566

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
              L+L    NP  +  +S + A    G      Q+   M+++G +
Sbjct: 567 ---LELDPQ-NPAGYILLSSIYAAK--GKWSNVAQLRRGMREKGAR 606


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/687 (34%), Positives = 374/687 (54%), Gaps = 62/687 (9%)

Query: 9   METLSTPVISLPRHPNPTTLTVNNGHQHHPHP--VFSLIKQCKNIKQLKQIHTQMLRTGL 66
           M++LS  VI  P+  +P  +      Q  P      SLI  CK+   L+ +H Q+LR G+
Sbjct: 1   MKSLS--VIFKPK-SSPAKIYFPADRQASPDESHFISLIHACKDTASLRHVHAQILRRGV 57

Query: 67  FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAE---PIQSF 123
                 A++L +  +L    S +Y+  +F    + N +  N LIR  + +A     ++ F
Sbjct: 58  L-SSRVAAQLVSCSSL--LKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHF 114

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           ++ L+L       P+  TFPFV+K+ ++L    +G+A+H   +K+  + D F+  SL+  
Sbjct: 115 ILMLRLGVK----PDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDM 170

Query: 184 YAICG-----------------------------------DLAMAYCVFVMIGKKDVVSW 208
           YA  G                                   D+ MA  +F  + +++  SW
Sbjct: 171 YAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSW 230

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           +++I G+V  G   +A +L+  M  +NV    V+   +++  ++  D E       A+S 
Sbjct: 231 STLIKGYVDSGELNRAKQLFELMPEKNV----VSWTTLINGFSQTGDYE------TAIST 280

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
           + E+ L K + P+E+T  +VLSAC++ GA+  G++IH  +   GIKL+  + T+L+DMY 
Sbjct: 281 YFEM-LEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYA 339

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG LD A  VF  +  +D+  W+ MI G+A++G   +A+  F +M  +  KP+ V F  
Sbjct: 340 KCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLA 399

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VL AC +S  VD G  FF+ M   Y + P +KHY  +VD+LGRAG L+EA E +E MPI 
Sbjct: 400 VLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPIN 459

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P  + W AL  ACK H+    AE    +LLEL+PE  G+ + L   +A  G   +V + R
Sbjct: 460 PDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRR 519

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
             ++    ++  G S IE++G+++KF AG+ SH L +EI  KLDEI++     GY P   
Sbjct: 520 LSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGAD 579

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
             +  +EEE+ +E    +HSE+LA+  G +   P   IRI+KNLR+CGDCH++ K +SK+
Sbjct: 580 WSIHDIEEEE-KENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKI 638

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             R+ILLRD  +FHHF+ G CSC DYW
Sbjct: 639 SQRDILLRDARQFHHFKDGRCSCGDYW 665


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/621 (34%), Positives = 346/621 (55%), Gaps = 55/621 (8%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREM 94
           V +++  C  I QL   K++H   +R G  +D   A+     +  C +     L  A  +
Sbjct: 239 VLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGM-----LICAERV 293

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F  +    + +WN LI   + + +P ++  +++Q+ Y S   P+ FT   ++ A+A L  
Sbjct: 294 FYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTY-SGLVPDWFTIGSLLLASAHLKS 352

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
            R G+ +HG V++   E D FI  SL+  Y  CG+ + A  +F  + +K  VSWN+MISG
Sbjct: 353 LRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG 412

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           + Q G                                          P +AL +F +L +
Sbjct: 413 YSQNGL-----------------------------------------PEDALILFRKL-V 430

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
           S    P +   VSVL AC+Q  A+ +G + H    K  +  + ++  S IDMY K G + 
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           ++  VF  +K++D+  W+ +IA + ++G G E+++LF RM++    P+  TF  +L  CS
Sbjct: 491 ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS 550

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           H+GLV+EG  +FN+M+  +G+ P ++HY C++DMLGRAG LD+A+  + +MP  P + VW
Sbjct: 551 HAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVW 610

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
            +LL  C+    +E+ +     LLELEP+N    V LSN+YA +G+WD+V  +R+ ++  
Sbjct: 611 SSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDI 670

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           GL+K+ GCS IE+ G++H F+AG++  P  KE+     ++  ++   GY PN S +L  V
Sbjct: 671 GLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDV 730

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE   E+ L  HSE+LAI +GL++      +RI KNLR+C DCH  +K +S++  REI+
Sbjct: 731 DEEKKIEK-LRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREII 789

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           +RD  RFHHF+ G CSC DYW
Sbjct: 790 IRDNKRFHHFKDGLCSCGDYW 810



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 226/491 (46%), Gaps = 91/491 (18%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS 116
           IH  +++ GL  D +  + L      G F  ++ A ++F  +P  NL +WN++I  +S +
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIA--MYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 117 AEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
                 F + ++++       P+  T   V+   AR V  ++G  IHG+ +K    +D+ 
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM-E 234
           ++NSL+  Y+ CG L  A  +F    +K+ VSWN+MI G    G+  +A  L+REM+M E
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 235 NVKPDEVTMVAVLSAC---AKKRDLE--------FGRWPNEALS---------------- 267
           +++ +EVT++ +L AC   ++ R L+         G   +E ++                
Sbjct: 231 DIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA 290

Query: 268 --IFHELQLSKNVNPDEFTFVSVLSACAQLG----AMDIGVQI----------------- 304
             +F+ ++ +K VN    ++ +++  CAQ G    A+++ +Q+                 
Sbjct: 291 ERVFYSME-TKTVN----SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLL 345

Query: 305 ---HAKMKKQG-----------IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
              H K  + G           ++++ ++  SL+ +Y  CG    A  +F  ++ +    
Sbjct: 346 ASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS 405

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR------M 404
           W+ MI+G++  G   +AL LF ++     +P+ +   +VL ACS    +  G+      +
Sbjct: 406 WNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYAL 465

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
               ME V+            +DM  ++G + E+    + +     AS W A++ A  +H
Sbjct: 466 KALLMEDVFVACS-------TIDMYAKSGCIKESRSVFDGLKNKDLAS-WNAIIAAYGVH 517

Query: 465 ----ENVELAE 471
               E++EL E
Sbjct: 518 GDGEESIELFE 528



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 45/272 (16%)

Query: 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFY 184
           +F++L+ ++ +  + FTFP VIKA    +   +G+ IHGMVIK     D+F+ N+LI  Y
Sbjct: 17  MFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMY 76

Query: 185 AICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM--ENVKPDEVT 242
              G +  A  VF  +  +++VSWNS+ISGF + GF +   ++  EM    E + PD  T
Sbjct: 77  GKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIAT 136

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
           +V VL  CA++ D++                                          +G+
Sbjct: 137 LVTVLPVCAREVDVQ------------------------------------------MGI 154

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           +IH    K G+  +  +  SL+DMY+KCG L +A  +F     ++   W+TMI G    G
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKG 214

Query: 363 CGREALDLFSRMQ-EAKVKPNAVTFTNVLCAC 393
              EA +LF  MQ +  ++ N VT  N+L AC
Sbjct: 215 YIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%)

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD--IGVQIHAKMKKQGIKLNCYLT 320
           ++A+ +F +L      N D FTF  V+ AC   G++D  +G  IH  + K G+ L+ ++ 
Sbjct: 12  SDAIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVG 69

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ--EAK 378
            +LI MY K G +D A++VFH +  R++  W+++I+GF+  G  ++  D+   M   E  
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           + P+  T   VL  C+    V  G +  + +    G+   V+    +VDM  + G L EA
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMG-IRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 439 VEFIEKMPIVPGASVWGALLGA 460
               +K      A  W  ++G 
Sbjct: 189 QMLFDKNN-RKNAVSWNTMIGG 209


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/574 (37%), Positives = 323/574 (56%), Gaps = 45/574 (7%)

Query: 83   GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
            G    +  A+++   +PQP+  TWN LI  ++ + EP ++   + +L+       N  T 
Sbjct: 1195 GKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITM 1253

Query: 143  PFVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A +A     + G  IH  ++ + FE D ++ NSLI  YA CGDL  +  +F  +G
Sbjct: 1254 VSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG 1313

Query: 202  KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             K  ++WN+M++     G  E                                       
Sbjct: 1314 NKSPITWNAMVAANAHHGCGE--------------------------------------- 1334

Query: 262  PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
              EAL IF E++ +  VN D+F+F   L+A A L  ++ G Q+H  + K G + + ++T 
Sbjct: 1335 --EALKIFGEMR-NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN 1391

Query: 322  SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            + +DMY KCG +   L++     +R    W+ +I+ FA +GC ++A + F  M +   KP
Sbjct: 1392 AAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKP 1451

Query: 382  NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            + VTF ++L AC+H GLVDEG  +++ M   +GV PG++H  C++D+LGR+G L  A  F
Sbjct: 1452 DHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGF 1511

Query: 442  IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
            I++MP+ P    W +LL AC+IH N+ELA     HLLEL+P +  A VL SN+ A +GKW
Sbjct: 1512 IKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKW 1571

Query: 502  DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            ++V  LRK M  + +KK+P CS +++  ++H F  GE  HP    I +KL E++   K  
Sbjct: 1572 EDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 1631

Query: 562  GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
            GYVP+ S  L  ++EE  +    N HSERLA+A+GLI+   S  +RI KNLRVCGDCH+V
Sbjct: 1632 GYVPDTSFALHDMDEEQKEYNLWN-HSERLALAFGLINTPESSTLRIFKNLRVCGDCHSV 1690

Query: 622  AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             K +S +  R+I+LRD YRFHHF GG CSC DYW
Sbjct: 1691 YKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/580 (27%), Positives = 269/580 (46%), Gaps = 88/580 (15%)

Query: 18  SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSAS 74
           +L R      L  +N  +  P     +++ C + K  KQ   IHT ++  G   D +  +
Sbjct: 10  NLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNT 69

Query: 75  KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
           KL           +  AR +FD +P+ ++ +W  ++  YS +    ++F++F  + +   
Sbjct: 70  KLIIFYV--KVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRH-CG 126

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS----------------- 177
              N+FT+   ++A   L    +G  + G + K  F ++LF+                  
Sbjct: 127 VKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDAS 186

Query: 178 --------------NSLIHFYAICGDLAMAYCVF-------------------------- 197
                         N++I  YA+ G    ++C+F                          
Sbjct: 187 YLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 246

Query: 198 --------------VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
                         +  G  D+V+   +I+ + + G    A +L + M    +K D  + 
Sbjct: 247 GLIIANQIHGIITQLGYGSYDIVT-GLLINAYAKNGSLRSAKDLRKGM----LKKDLFSS 301

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
            A+++  A +     G +  +AL +F E+    N+  D+    S+L+ CA L +  +G Q
Sbjct: 302 TALITGYAHE-----GIYSVDALDLFKEMN-QMNIGMDDVILCSMLNICANLASFALGTQ 355

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           IHA   K     +  +  +LIDMY K G ++ A   F  ++ ++V  W+++I+G+A +G 
Sbjct: 356 IHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGY 415

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           G  A+ L+ +M+    KPN VTF ++L ACSH+GL  EG   FN M   Y + P  +HY+
Sbjct: 416 GHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYS 475

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
           CMVD+  R GLL+EA   + K+ I   AS+WGA+LGA  I+  + L + A S+L  ++PE
Sbjct: 476 CMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPE 535

Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           N    V+L++IY+  G WD+  ++RK M     KK  G S
Sbjct: 536 NSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYS 575



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 213/481 (44%), Gaps = 80/481 (16%)

Query: 84   TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFT 141
            +FSS+E A  +FD + + ++ +WN +I AY+      +S   F  ++ ++N     N  T
Sbjct: 994  SFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNET---NSTT 1050

Query: 142  FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
               ++   + +   + G+ IHG+V+K   + ++ I N+L+  Y+  G    A  VF  + 
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 1110

Query: 202  KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL----- 256
            ++D++SWNSM++ +VQ G     +++  E+       + VT  + L+AC+    L     
Sbjct: 1111 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKI 1170

Query: 257  -----------EFGRWPNEALSIFHELQL--------------------------SKNVN 279
                       +F    N  ++++ +L +                          ++N  
Sbjct: 1171 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 1230

Query: 280  PDE-----------------FTFVSVLSAC-AQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
            P+E                  T VSVL AC A    +  G+ IHA +   G + + Y+  
Sbjct: 1231 PNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKN 1290

Query: 322  SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            SLI MY KCG+L+ +  +F  + ++    W+ M+A  A +GCG EAL +F  M+   V  
Sbjct: 1291 SLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNL 1350

Query: 382  NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            +  +F+  L A ++  +++EG+     +  + G    +      +DM G+ G + + ++ 
Sbjct: 1351 DQFSFSGGLAATANLAVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKM 1409

Query: 442  IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE-------------NHGAL 488
            + + PI      W  L+ A   H   + A      +L+L P+             NHG L
Sbjct: 1410 LPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGL 1468

Query: 489  V 489
            V
Sbjct: 1469 V 1469



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 191/428 (44%), Gaps = 59/428 (13%)

Query: 41   VFSLIKQCKNIKQLK----QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
            V SLI  C     +     Q+H  +++TG+  D Y  + L      G+   +  A+++F+
Sbjct: 848  VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVH--FYGSIGLVYNAQKLFE 905

Query: 97   QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
            ++P  N+ +W +L+  YS S  P +   ++ Q +       N+ TF  V  +   L    
Sbjct: 906  EMPDHNVVSWTSLMVGYSDSGNPGEVLNVY-QRMRQEGVSGNQNTFATVTSSCGLLEDQV 964

Query: 157  VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            +G  + G +I+  FED + ++NSLI  ++    +  A  VF  + + D++SWN+MIS + 
Sbjct: 965  LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 1024

Query: 217  QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
              G   +++  +  M   + + +  T+ ++LS C+   +L++GR                
Sbjct: 1025 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR---------------- 1068

Query: 277  NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                       IH  + K G+  N  +  +L+ +Y++ G  + A
Sbjct: 1069 --------------------------GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 1102

Query: 337  LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
              VF  +  RD+  W++M+A +   G   + L + + + +     N VTF + L ACS+ 
Sbjct: 1103 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 1162

Query: 397  GLVDEGRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
              + E ++    +     +V G   +      +V M G+ G++ EA + ++ MP  P   
Sbjct: 1163 ECLIESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRV 1216

Query: 453  VWGALLGA 460
             W AL+G 
Sbjct: 1217 TWNALIGG 1224



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 137/302 (45%), Gaps = 44/302 (14%)

Query: 85   FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
            F ++E+AR +FD++   N  +W+T++  Y       ++  +F Q+ +     PN F    
Sbjct: 792  FGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVAS 850

Query: 145  VIKAAARL-VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
            +I A +R       G  +HG V+K+    D+++  +L+HFY   G +  A  +F  +   
Sbjct: 851  LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDH 910

Query: 204  DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
            +VVSW S++ G+   G                                          P 
Sbjct: 911  NVVSWTSLMVGYSDSGN-----------------------------------------PG 929

Query: 264  EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
            E L+++  ++  + V+ ++ TF +V S+C  L    +G Q+   + + G + +  +  SL
Sbjct: 930  EVLNVYQRMR-QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 324  IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
            I M++   ++++A  VF  +   D+  W+ MI+ +A +G  RE+L  F  M+    + N+
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 384  VT 385
             T
Sbjct: 1049 TT 1050



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 160/372 (43%), Gaps = 51/372 (13%)

Query: 96   DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
            +Q+   +L T N   R +      I    +  Q         N   FP  +K  + +   
Sbjct: 703  EQVKDDDLKTSNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFP--LKGFSEITSQ 760

Query: 156  RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
              G+A+H   I  S    +F +N+LI+ Y+  G++  A  VF  +  ++  SW++M+SG+
Sbjct: 761  MAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 820

Query: 216  VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            V+ G +E+A+ L+ +M    V+P+   + ++++AC++                       
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRS---------------------- 858

Query: 276  KNVNPDEFTFVSVLSACAQLGAM-DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                                G M D G Q+H  + K GI  + Y+ T+L+  Y   G + 
Sbjct: 859  --------------------GYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 898

Query: 335  KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
             A ++F  +   +V  W++++ G++  G   E L+++ RM++  V  N  TF  V  +C 
Sbjct: 899  NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC- 957

Query: 395  HSGLVDEGRMFFNQMEPV--YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
              GL+++  + +  +  +  YG    V     ++ M      ++EA    + M      S
Sbjct: 958  --GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIIS 1015

Query: 453  VWGALLGACKIH 464
             W A++ A   H
Sbjct: 1016 -WNAMISAYAHH 1026


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/638 (35%), Positives = 355/638 (55%), Gaps = 58/638 (9%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL 82
           PNPT        Q   H ++S   Q  ++     +H  ++ +G   DP+ A+KL      
Sbjct: 74  PNPT-------QQTFEHLIYS-CAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLIN--MY 123

Query: 83  GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY-NSPYFPNEFT 141
               S++ A ++FD+  +  +Y WN L RA +      +   +++Q+ +  +P   + FT
Sbjct: 124 YELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTP--SDRFT 181

Query: 142 FPFVIKAAA----RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + +V+KA       +   R G+ IH  +++  +E ++ +  +L+  YA  G ++ A  VF
Sbjct: 182 YTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVF 241

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
             +  K+ VSW++MI+ F +     KA+EL++ M  E              AC       
Sbjct: 242 CAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFE--------------AC------- 280

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                              N  P+  T V++L ACA L A++ G  IH  + ++ +    
Sbjct: 281 -------------------NSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSIL 321

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            +  +LI MY +CG +     VF  +K RDV  W+++I+ + M+G G++A+ +F  M   
Sbjct: 322 PVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            V P+ ++F  VL ACSH+GLV+EG++ F  M   Y + PG++HY CMVD+LGRA  L E
Sbjct: 382 GVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGE 441

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           A++ IE M   PG +VWG+LLG+C+IH NVELAE A + L ELEP N G  VLL++IYA+
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAE 501

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
              W     + K +   GL+K PGCS IEV  +++ F++ +  +P  +EI++ L ++   
Sbjct: 502 AKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNE 561

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K+ GYVP  + +L  ++EE+ +   L  HSE+LA+A+GLI+    + IRI KNLR+C D
Sbjct: 562 MKAQGYVPQTNVVLYDLDEEEKERIVLG-HSEKLAVAFGLINTAKGETIRIRKNLRLCED 620

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH V K ISK  NREIL+RD  RFHHFR G CSC DYW
Sbjct: 621 CHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 349/639 (54%), Gaps = 54/639 (8%)

Query: 25  PTTLTVNNGHQHHPHPVFSLIKQ---CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           P+T         H H    LI++   C +I  +   HT +L++G   D ++ + L     
Sbjct: 14  PSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYV 73

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                    A ++F+++ +PN+ ++ +L+  +     P  + +IF +++  S   PN FT
Sbjct: 74  --RIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKML-ESWVLPNAFT 130

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  V+ A + L   R GQ IH  V     + +L + +SLI  Y  C ++  A  VF  + 
Sbjct: 131 FATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMD 190

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
            ++VVSW SMI+ + Q    E A++L+RE                               
Sbjct: 191 YRNVVSWTSMITAYGQNALGECALQLFRE------------------------------- 219

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                  F+ L LS   +P+ F   SV++ACA LG +  G   HA + ++G + N  + +
Sbjct: 220 -------FNGLPLS---SPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVAS 269

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+DMY KCG +  + +VF  +    V  +++MI G A YG G+ +LD+F  M + ++KP
Sbjct: 270 ALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKP 329

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N VTF  VL ACSHSGLVD+G  + + M   +GVVP  KHYTC+VDMLGR G LDEA + 
Sbjct: 330 NDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQL 389

Query: 442 IEKMPIVP--GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
            + + + P  GA +WG LL A +++  V++A  A   L+E   +   A V +SN YA  G
Sbjct: 390 AKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAG 449

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC---KEIYSKLDEIVA 556
           KW+NV  +R  M+  G+ KEPGCS +E+    + F AG+ S  LC    E+ S L E+  
Sbjct: 450 KWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVS--LCARGSEVASLLRELER 507

Query: 557 RLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
           R+K  GYV     L+ +  EE+ +E+ + LHSERLA+A+GLIS+     IR++KNLR+C 
Sbjct: 508 RMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCR 567

Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           DCH   KLIS++  R+ ++RD  RFHHF  G+C+C D+W
Sbjct: 568 DCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 606


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 344/624 (55%), Gaps = 69/624 (11%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ AR++FD +P+ N+ +W  L++ Y  + +   +  +F ++       P +    + + 
Sbjct: 95  IDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-------PEKNKVSWTVM 147

Query: 148 AAARLVQFRVGQA------------------IHGM-----------VIKSSFEDDLFISN 178
               L   R+  A                  IHG+           +     E  +    
Sbjct: 148 LIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWT 207

Query: 179 SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238
           +++  Y     +  A  +F ++ +K  VSW SM+ G+VQ G  E A EL+   E+  VKP
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELF---EVMPVKP 264

Query: 239 DEVTMVAVLSACAKKRDLEFGR-------------WPN------------EALSIFHELQ 273
             +   A++S   +K ++   R             W              EAL +F  +Q
Sbjct: 265 -VIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ 323

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
             + V P   T +S+LS CA L ++  G Q+HA++ +    ++ Y+ + L+ MY KCG L
Sbjct: 324 -KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGEL 382

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCA 392
            K+  +F    S+D+ +W+++I+G+A +G G EAL +F  M      KPN VTF   L A
Sbjct: 383 VKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSA 442

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CS++G+V+EG   +  ME V+GV P   HY CMVDMLGRAG  +EA+E I+ M + P A+
Sbjct: 443 CSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAA 502

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
           VWG+LLGAC+ H  +++AE+    L+E+EPEN G  +LLSN+YA  G+W +V+ELRK M+
Sbjct: 503 VWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMK 562

Query: 513 VSGLKKEPGCSSIEVNGEIHKFL-AGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
              ++K PGCS  EV  ++H F   G +SHP  + I   LDE+   L+  GY P+ S+ L
Sbjct: 563 TRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYAL 622

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             V+EE+ +  +L  HSERLA+AY L+ +    PIR++KNLRVC DCHT  K+ISK+  R
Sbjct: 623 HDVDEEE-KVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKER 681

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHFR G CSC DYW
Sbjct: 682 EIILRDANRFHHFRNGECSCKDYW 705



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 41/299 (13%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS--PYFPN 138
            LG    +  AR +FD + + N  +W T+I+ +  +   +++  +F+ +      P FP 
Sbjct: 274 GLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFP- 332

Query: 139 EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
             T   ++   A L     G+ +H  +++  F+ D+++++ L+  Y  CG+L  +  +F 
Sbjct: 333 --TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFD 390

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME-NVKPDEVTMVAVLSACAKKRDLE 257
               KD++ WNS+ISG+   G  E+A++++ EM +  + KP+EVT VA LSAC+    +E
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 258 ------------FGRWP------------------NEALSIFHELQLSKNVNPDEFTFVS 287
                       FG  P                  NEA+    E+  S  V PD   + S
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM----EMIDSMTVEPDAAVWGS 506

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +L AC     +D+  +  AK   +    N      L +MY   G      E+   +K+R
Sbjct: 507 LLGACRTHSQLDVA-EFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTR 564



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 28/273 (10%)

Query: 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236
           +N  I   +  G +  A  +F     K + SWNSM++G+        A +L+ EM   N+
Sbjct: 20  ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI 79

Query: 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
               ++   ++S   K  ++      +EA  +F +L   +NV     ++ +++      G
Sbjct: 80  ----ISWNGLVSGYMKNGEI------DEARKVF-DLMPERNV----VSWTALVKGYVHNG 124

Query: 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
            +D+   +  KM ++    N    T ++  + + G +D A +++  +  +D    ++MI 
Sbjct: 125 KVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIH 180

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416
           G    G   EA ++F  M E  V    +T+T ++     +  VD+ R  F+ M     V 
Sbjct: 181 GLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEV- 235

Query: 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
                +T M+    + G +++A E  E MP+ P
Sbjct: 236 ----SWTSMLMGYVQNGRIEDAEELFEVMPVKP 264



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 123/273 (45%), Gaps = 32/273 (11%)

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  +F  +  ++++SWN ++SG+++ G  ++A +++  M   NV    V+  A++     
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVH 122

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
              ++       A S+F ++     V     ++  +L    Q G +D   +++  +  + 
Sbjct: 123 NGKVDV------AESLFWKMPEKNKV-----SWTVMLIGFLQDGRIDDACKLYEMIPDK- 170

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
              +    TS+I    K G +D+A E+F  +  R V  W+TM+ G+       +A  +F 
Sbjct: 171 ---DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFD 227

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
            M E       V++T++L     +G +++    F  M PV  V+        M+  LG+ 
Sbjct: 228 VMPE----KTEVSWTSMLMGYVQNGRIEDAEELFEVM-PVKPVIA----CNAMISGLGQK 278

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           G + +A    + M     AS W  ++   KIHE
Sbjct: 279 GEIAKARRVFDSMKERNDAS-WQTVI---KIHE 307



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 44/223 (19%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSLEYAREM 94
           + S++  C ++  L   KQ+H Q++R     D Y AS L T    C       L  ++ +
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG-----ELVKSKLI 388

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD+ P  ++  WN++I  Y+S     ++  +F ++  +    PNE TF   + A      
Sbjct: 389 FDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC----- 443

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
                +  GMV     E+ L I  S+   + +    A   C+  M+G+            
Sbjct: 444 -----SYAGMV-----EEGLKIYESMESVFGVKPITAHYACMVDMLGR------------ 481

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
               G F +A+E+   M    V+PD     ++L AC     L+
Sbjct: 482 ---AGRFNEAMEMIDSM---TVEPDAAVWGSLLGACRTHSQLD 518



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 308 MKKQGIKLNCYLTT-------SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           MK Q +    Y TT         I   ++ G + +A ++F +  S+ +  W++M+AG+  
Sbjct: 1   MKSQILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFA 60

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
               R+A  LF  M +     N +++  ++     +G +DE R  F+ M P   VV    
Sbjct: 61  NLMPRDARKLFDEMPDR----NIISWNGLVSGYMKNGEIDEARKVFDLM-PERNVVS--- 112

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG---------ACKIHENV 467
            +T +V      G +D A     KMP     S    L+G         ACK++E +
Sbjct: 113 -WTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMI 167


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/630 (37%), Positives = 336/630 (53%), Gaps = 55/630 (8%)

Query: 33  GHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTF 85
           G +  P  +  LIK C     +   + IH  +          +   LF   +L      F
Sbjct: 61  GVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFVSNSLVSMYAKF 120

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             L+ A E+F  +PQ N+ +W T++ A +++    +  + FL  +       N +TF  V
Sbjct: 121 GMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSV 180

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           + A        V  A+H  +IK   + D+F+ +SLI  Y   GDL     VF  +   D+
Sbjct: 181 LGACG---TPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDL 237

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V WNS+I+GF Q G    A+EL+  M+                        E G   N+ 
Sbjct: 238 VVWNSIIAGFAQSGDGVGAMELFMRMK------------------------ESGFLANQG 273

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                             T  SVL AC  +  +++G Q+HA + K    L   L  +L+D
Sbjct: 274 ------------------TLTSVLRACTGMVMLEVGRQVHAHVLKYDRDL--ILHNALLD 313

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG L  A  +F  +  RDV  WSTMI+G A  G   EAL +F  M+     PN +T
Sbjct: 314 MYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNIT 373

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
              VL ACSH+GLV++G  +F  M+ ++G+ P  +H  CMVD+LGRAG LDEA++FI +M
Sbjct: 374 MVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEM 433

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
              P + +W  LLGAC++H+N  LA YA + +L+LEPE+ GA +LLSNIYA   +W N  
Sbjct: 434 KFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAE 493

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           +  K MR  G+KKEPG S IE+   +H F+AGE SHP    I  +L+ ++ R K  GYVP
Sbjct: 494 KSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVP 553

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
               +LQ +  E  +E  L  HSE+LAIA+G ++    +P+RI+KNLR+CGDCH  AKL+
Sbjct: 554 QTEFVLQDLGTEQ-KEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLV 612

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           SK   + I++RD  RFHHF+ G CSC DYW
Sbjct: 613 SKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/622 (37%), Positives = 358/622 (57%), Gaps = 57/622 (9%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           LI  C +   L   +++H  +L  G   DP+ A+KL    +   F S++ AR++FD+   
Sbjct: 76  LILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSF--FDSIDNARKVFDKTRN 133

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE-FTFPFVIKAAARLVQF---- 155
             +Y +N L RA S +    +   ++ ++  NS   P++ FT+ +V+KA      F    
Sbjct: 134 RTIYVYNALFRALSLAGHGEEVLNMYRRM--NSIGIPSDRFTYTYVLKACVASECFVSLL 191

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ IH  +++  ++  + I  +L+  YA  G ++ A CVF  +  K+VVSW++MI+ +
Sbjct: 192 NKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACY 251

Query: 216 VQGGFFEKAIELYRE--MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            + G   +A+EL+RE  +E +++ P+ VTMV+VL ACA    LE GR             
Sbjct: 252 AKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRL------------ 299

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                                         IH  + ++G+     + ++L+ MY +CG L
Sbjct: 300 ------------------------------IHGYILRKGLDSILPVISALVTMYARCGKL 329

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           +    VF  +  RDV  W+++I+ + ++G G++A+ +F  M    V+P+ ++F +VL AC
Sbjct: 330 ELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGAC 389

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SH+GLVDEG+M FN M   +G+ P V+HY CMVD+LGRA  L+EA + IE M I PG  V
Sbjct: 390 SHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKV 449

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           WG+LLG+C+IH NVELAE A   L +LEP N G  VLL++IYA+ G WD V  ++K +  
Sbjct: 450 WGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEA 509

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            GL+K PG S IEV  +I+ F++ +  +P  +++++ L ++   LK  GYVP    +L  
Sbjct: 510 RGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYD 569

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           ++  + +   L  HSE+LA+A+GLI+    + IRI K+LR+C DCH+  K ISK  N+EI
Sbjct: 570 LKAAEKERIVLG-HSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEI 628

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           L+RD  RFHHFR G CSC DYW
Sbjct: 629 LVRDVNRFHHFRDGVCSCGDYW 650



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 51/370 (13%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  +    N LI++        Q+    L+L+   P  P + T+  +I +          
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQA----LELLSLEPN-PAQHTYELLILSCTHQNSLLDA 89

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           Q +H  ++++ F+ D F++  LI+ Y+    +  A  VF     + +  +N++       
Sbjct: 90  QRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLA 149

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G  E+ + +YR M    +  D  T   VL AC                            
Sbjct: 150 GHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASE------------------------ 185

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
                 FVS+L+          G +IHA + + G     ++ T+L+DMY K G +  A  
Sbjct: 186 -----CFVSLLNK---------GREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASC 231

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR--MQEAKVKPNAVTFTNVLCACSHS 396
           VF+ +  ++V  WS MIA +A  G   EAL+LF    ++   + PN+VT  +VL AC+  
Sbjct: 232 VFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAAL 291

Query: 397 GLVDEGRMFFNQM--EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             +++GR+    +  + +  ++P +   + +V M  R G L+      ++M      S W
Sbjct: 292 AALEQGRLIHGYILRKGLDSILPVI---SALVTMYARCGKLELGQRVFDQMDKRDVVS-W 347

Query: 455 GALLGACKIH 464
            +L+ +  +H
Sbjct: 348 NSLISSYGVH 357


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/589 (37%), Positives = 327/589 (55%), Gaps = 63/589 (10%)

Query: 34  HQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE 93
           H+       SL++ CK  KQ+ QI  Q++  G  ++ Y   KL T CA  T   + YAR+
Sbjct: 34  HRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICA--TLKRMTYARQ 91

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +FDQIP PN+  WN++ R Y+ S    +   +F Q+       PN FTFP V+K+  ++ 
Sbjct: 92  LFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKIN 150

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV------------MIG 201
               G+ +H  +IK  F  + F+  +LI  Y+  G +  AY +F             MI 
Sbjct: 151 ALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMIN 210

Query: 202 -------------------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
                              ++DVV WN M+SG+++GG   +A +L+ EM   +V    + 
Sbjct: 211 GYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDV----MF 266

Query: 243 MVAVLSACAKKRDLE-----FGRWPN--------------------EALSIFHELQLSKN 277
              VL   A   ++E     F   P                     E L  F  +    +
Sbjct: 267 WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD 326

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V P++ T V+VLSACA+LGA+D+G  +H   +  G+K N Y+  +L+DMY KCG ++ A+
Sbjct: 327 VPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 386

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  + ++D+  W+T+I G AM+  G +AL+LF +M+ A  KP+ +TF  +LCAC+H G
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 446

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           LV++G  +F  M   Y ++P ++HY CMVDML RAG L++A+ F+ KMP+     +W  L
Sbjct: 447 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 506

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC+I++NVELAE A   L+ELEP+N    V+LSNIY   G+W++V+ L+  MR +G K
Sbjct: 507 LGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFK 566

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           K PGCS IEVN  + +F + +  HP  +EIY  L  +V  L+SFGYVP+
Sbjct: 567 KLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPD 615


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 346/631 (54%), Gaps = 49/631 (7%)

Query: 28  LTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS 87
           + + NG +     V +++     +++LK +  Q+L   +    YS   L T   +  FS 
Sbjct: 21  MVLGNGPRFDLTTVIAVLPAVAELQELK-LGMQILCLAIKCGFYSHVSLLTG-LISLFSK 78

Query: 88  ---LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              +E AR +F +I + +L + N +I  ++ + E   S  +F +L+ +     +  T   
Sbjct: 79  CGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSS-TIVG 137

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +I   +      +   IHG  +K        +S +L   Y    ++  A  +F    +K 
Sbjct: 138 LIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKT 197

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           + SWN+MISG  Q G  + AI                                       
Sbjct: 198 LASWNAMISGCTQNGLTDAAI--------------------------------------- 218

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
             S+F  +Q   NVNP+  T  S+LSACAQ+GA+ +G  +H+ +K    + N Y++T+LI
Sbjct: 219 --SLFQTMQ-KNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALI 275

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           DMY KCG++  A E+F  +  ++   W+ MI+G+ ++G G+EAL LF  M  + VKP  +
Sbjct: 276 DMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGL 335

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF +VL ACSH+GLV EG   F+ M   +G  P  +HY CMVD+LGRAG L +A+EFI+ 
Sbjct: 336 TFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKA 395

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ PG  VWGALLGAC IH++  LA  A   L EL+PEN G  VL+SNIY+   K+   
Sbjct: 396 MPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQA 455

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + +R+  +   L K PGC+ IE+    H F +G+ SHP  K IY++LD++  ++   G+ 
Sbjct: 456 ASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQ 515

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
              + +L  +EEE+ +E  + +HSE+LAIA+GLIS EP   IRI+KNLRVC DCH   K 
Sbjct: 516 TETTTVLHDLEEEE-KELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKF 574

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +SK+  R I++RD  RFHHF+ G CSC DYW
Sbjct: 575 LSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 24/209 (11%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           +++ +F ++ L      D  T ++VL A A+L  + +G+QI     K G   +  L T L
Sbjct: 13  DSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGL 72

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I +++KCG ++ A  +F  ++ +D+   + MI+GF   G   +++ LF  +  +  + ++
Sbjct: 73  ISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSS 132

Query: 384 VTFTNV-----------LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
            T   +           LC C H   V  G +  + +      V     Y  + +M+   
Sbjct: 133 STIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTV-----YCRLNEMIFAR 187

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGAC 461
            L DE+ E           + W A++  C
Sbjct: 188 QLFDESAE--------KTLASWNAMISGC 208


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/682 (33%), Positives = 356/682 (52%), Gaps = 72/682 (10%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPC---ALGTFSSLEYAREM 94
           P  +  L+  C  ++ L ++H  ++ +       S   + + C   A      L  A   
Sbjct: 3   PRRLRRLLSSCAALRTLTRLHALLIVS----SSASCHHILSSCLATAYARAGDLAAAEST 58

Query: 95  FDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
               P    ++  WN L+ A+S  A P ++  +F  L       P+  TF   + A ARL
Sbjct: 59  LATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRAL--PPAARPDSTTFTLALSACARL 116

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
                G+ +      + + +D+F+ +S+++ YA CG +  A  VF  + K+D V+W++M+
Sbjct: 117 GDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMV 176

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP---------- 262
           +GFV  G   +AIE+Y  M  + ++ DEV +V V+ ACA   D   G             
Sbjct: 177 TGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQ 236

Query: 263 -------------------NEALSIFHEL-------------QLSKNVNPDEFT------ 284
                              ++A  +F  +             QL++  N DE        
Sbjct: 237 MDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMM 296

Query: 285 -----------FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                       V  L AC+ LG + +G  IH  + +  ++L+  + T++IDMY+KCG+L
Sbjct: 297 QVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSL 355

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
             A  +F  V SRD+  W+ MIA    +G GR+AL LF  M+  +V+P+  TF ++L A 
Sbjct: 356 SSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSAL 415

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           SHSGLV+EG+ +FN M   YG+ PG KH  C+VD+L R+GL++EA   +  +   P  S+
Sbjct: 416 SHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISI 475

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
             ALL  C  +  +EL E     +LEL+P + G L L+SN+YA    W  V E+RK M+ 
Sbjct: 476 LVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKD 535

Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
            G KK PGCSSIE+ G +H F+  + SHP  ++I   + ++ + ++  GY+P    +   
Sbjct: 536 HGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHD 595

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           + EE V+EQ L+ HSERLA A+GL++  P   + ++KNLRVCGDCH   K +SK+ +REI
Sbjct: 596 L-EEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREI 654

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RD  RFHHF+ G CSC DYW
Sbjct: 655 VVRDAKRFHHFKDGACSCGDYW 676


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 330/607 (54%), Gaps = 43/607 (7%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI-P 99
           +  +++ C ++ +L++IH+ ++  GL   P   + L   CA+    SL YA+ +FD+   
Sbjct: 8   IVRMLQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDS 67

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            P+   WN LIR +S S+ P+ + + + +++ +S   P+ FTF F +KA  R+       
Sbjct: 68  DPSTSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCL 127

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG VI+S F  D  +S +L+  Y+  G + +A  VF  +  +D+VSWN+MIS F   G
Sbjct: 128 ELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAG 187

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A  +Y  M  E V             C                             
Sbjct: 188 LHHQAFSMYSRMANEGV-------------CV---------------------------- 206

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D +T V++LS+CA + A+++GV +H        + + ++  +LIDMY KCG+L+ A+ V
Sbjct: 207 -DAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCGSLENAVGV 265

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  ++ RDV  W++MI G+ ++G G EA+  F +M  + V+PNAVTF  +L  CSH GLV
Sbjct: 266 FKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLLGCSHQGLV 325

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
            EG   F  M   + + P VKHY CMVD+ GRAG L++A+E I          +W  LLG
Sbjct: 326 KEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDPVLWRTLLG 385

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +CKIH N+EL E A   L++LE  N G  VL+++IY+        + +RK +R   L+  
Sbjct: 386 SCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQGFASMRKLIRSHDLRTI 445

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PG S IE+  ++HKF+  +  HP    IYS+L E++ R    GY P  S+       +  
Sbjct: 446 PGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINRAILAGYKPEDSNRTAHTLSDRC 505

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
            E A   HSE+LAIAYGL+       +RI KNLRVC DCH+  K +SK +NREI++RDR 
Sbjct: 506 LESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRV 565

Query: 640 RFHHFRG 646
           RFH F G
Sbjct: 566 RFHQFAG 572


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/566 (39%), Positives = 315/566 (55%), Gaps = 45/566 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P   L TWN +I          +   +F ++ +   + P+E+T   V   +A
Sbjct: 44  ARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREM-HGLGFSPDEYTLGSVFSGSA 102

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    +GQ IHG  IK   E DL +++SL H Y   G L     V   +  +++V+WN+
Sbjct: 103 GLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNT 162

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I G  Q G  E  + LY+ M+              +S C                    
Sbjct: 163 LIMGNAQNGCPETVLYLYKMMK--------------ISGC-------------------- 188

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                    P++ TFV+VLS+C+ L     G QIHA+  K G      + +SLI MY+KC
Sbjct: 189 --------RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNV 389
           G L  A + F   +  D  +WS+MI+ +  +G G EA+ LF+ M E  +++ N V F N+
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNL 300

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL D+G   F+ M   YG  PG+KHYTC+VD+LGRAG LD+A   I+ MPI P
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKP 360

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  LL AC IH+N E+A+     +LE++P +    VLL+N++A   +W +VSE+RK
Sbjct: 361 DPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR   +KKE G S  E  GE+H+F  G+ S    KEIYS L E+   +K  GY P+ + 
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  ++EE+ +E  L  HSE+LA+A+ L+ +    PIRI+KNLRVC DCH   K IS + 
Sbjct: 481 VLHDMDEEE-KESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIM 539

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI LRD  RFHHF  G CSC DYW
Sbjct: 540 NREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 140/287 (48%), Gaps = 19/287 (6%)

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  Y+  GDL  A  ++  + KK+ +S N +I+G+V+ G    A +++ EM      PD 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEM------PDR 54

Query: 241 --VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
              T  A+++       ++F  +  E LS+F E+      +PDE+T  SV S  A L ++
Sbjct: 55  KLTTWNAMIAGL-----IQF-EYNEEGLSLFREMH-GLGFSPDEYTLGSVFSGSAGLRSV 107

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
            IG QIH    K G++L+  + +SL  MY + G L     V  ++  R++  W+T+I G 
Sbjct: 108 SIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGN 167

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           A  GC    L L+  M+ +  +PN +TF  VL +CS   +  +G+    +   + G    
Sbjct: 168 AQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI-GASSV 226

Query: 419 VKHYTCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVWGALLGACKIH 464
           V   + ++ M  + G L D A  F E+        +W +++ A   H
Sbjct: 227 VAVVSSLISMYSKCGCLGDAAKAFSERED--EDEVMWSSMISAYGFH 271


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 332/570 (58%), Gaps = 52/570 (9%)

Query: 50  NIKQLKQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQI-PQPNLYTWN 107
           ++  +KQ+H + LR G+    P  A  L    A      L YA  +  ++ P P+ ++ N
Sbjct: 31  SLATVKQLHARALRAGVPPAHPLLAKHLLFHLASLRAPPLRYAVAVLTRVLPDPDPFSLN 90

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           T++R  +SS+ P  S  + L     +P  P+  T+P +++A ARL+  R G+ IH    K
Sbjct: 91  TVLRIAASSSRP--SLALALHARRLAP--PDTHTYPPLLQACARLLSLRHGERIHAEAAK 146

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +     +F+ NSL+H Y  CG    A+ VF  + +G++++VSWNSM++GF   G      
Sbjct: 147 NGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANG------ 200

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
                                               PNE L+IF E+ L  N  PD FT 
Sbjct: 201 -----------------------------------RPNEVLTIFREM-LDVNFMPDGFTV 224

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           VSVL+A A++GA+ +G ++H  + K G+  N ++  +LID+Y KCG ++ A  VF  + +
Sbjct: 225 VSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGA 284

Query: 346 RDVFV-WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
           R   V W+++I G A+ G G+EAL+LF  M+  K+ P  +T   VL ACSH GLVD+G M
Sbjct: 285 RRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFM 344

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +FN+M+  Y + P ++H  CMVD+LGRAG + EA ++I  MP+ P A VW  LLGAC +H
Sbjct: 345 YFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMH 404

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           + +EL E A + L+EL+P + G  VLLSN+YA  G+W +V  LRK M   G++K PG S 
Sbjct: 405 KKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSL 464

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           +E+   +++F+ G+ SHP  ++IY  L E+   L+  GY+P  S++L  +EEE+ +E AL
Sbjct: 465 VELRNSVYEFVMGDRSHPESEQIYQMLAEVADSLRREGYIPRTSNVLADIEEEE-KETAL 523

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           N HSERLAIA+ L+   P  PIRIVKNLR+
Sbjct: 524 NYHSERLAIAFALLKSLPGTPIRIVKNLRL 553


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 331/568 (58%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E AR +F+ +   +  TW T++  ++ +    ++  IF ++ +      +++TF  ++ 
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAI-DQYTFGSILT 280

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A   L     G+ IH  +I++ ++D++F+ ++L+  Y+ C  + +A  VF  +  K+++S
Sbjct: 281 ACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIIS 340

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W ++I G+ Q G  E                                         EA+ 
Sbjct: 341 WTALIVGYGQNGCSE-----------------------------------------EAVR 359

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+Q    ++PD++T  SV+S+CA L +++ G Q H      G+     ++ +L+ +Y
Sbjct: 360 VFSEMQ-RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLY 418

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG+++ A  +F  +   D   W+ +++G+A +G  +E +DLF +M    VKP+ VTF 
Sbjct: 419 GKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFI 478

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACS +G V++GR +F+ M+  +G+VP   HYTCM+D+  R+G L EA EFI++MP+
Sbjct: 479 GVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPM 538

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P A  WG LL AC++  ++E+ ++A  +LLE++P+N  + VLL +++A  G+W+ V++L
Sbjct: 539 HPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQL 598

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ MR   +KKEPGCS I+   ++H F A + SHP  K IY KL+ + +++   GY P+ 
Sbjct: 599 RRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDV 658

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +L  V + D +   ++ HSE+LAIA+GLI V    PIRIVKNLRVC DCH   K ISK
Sbjct: 659 SSVLHDVADTD-KVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISK 717

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R+IL+RD  RFH F  G CSC D+W
Sbjct: 718 ITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 203/407 (49%), Gaps = 30/407 (7%)

Query: 63  RTGLFFDPYSASKLFTPCALGTFSSLEYAR------EMFDQIPQPNLYTWNTLIRAYSSS 116
           R    FD      LFT  AL   S+L +AR       +F  + Q ++ ++N +I  +S  
Sbjct: 59  RARRVFDAMPHPNLFTYNAL--LSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGG 116

Query: 117 AEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
               Q+  ++L L+  +S   P+  T   ++ AA+ L    +G+  H  +++  F  + F
Sbjct: 117 GSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAF 176

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + + L+  YA    +  A   F  +  K+VV +N+MI+G ++    E+A  L+  M    
Sbjct: 177 VGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVM---- 232

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
              D +T   +++   +   LE     +EAL IF  ++  + +  D++TF S+L+AC  L
Sbjct: 233 TDRDSITWTTMVTGFTQN-GLE-----SEALEIFRRMRF-QGIAIDQYTFGSILTACGAL 285

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A++ G QIHA + +     N ++ ++L+DMY+KC ++  A  VF  +  +++  W+ +I
Sbjct: 286 SALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALI 345

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
            G+   GC  EA+ +FS MQ   + P+  T  +V+ +C++   ++EG  F         +
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFH-----CLAL 400

Query: 416 VPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V G+ HY      +V + G+ G +++A    ++M      S W AL+
Sbjct: 401 VSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALV 446



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 51/316 (16%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           ++Q KQIH  ++RT    + +  S L   ++ C      S++ A  +F ++   N+ +W 
Sbjct: 288 LEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKC-----RSIKLAETVFRRMTCKNIISWT 342

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            LI  Y  +    ++  +F ++  +    P+++T   VI + A L     G   H + + 
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDG-IDPDDYTLGSVISSCANLASLEEGAQFHCLALV 401

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           S     + +SN+L+  Y  CG +  A+ +F  +   D VSW +++SG+ Q G  ++ I+L
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDL 461

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           + +M  + VKPD VT + VLSAC++   +E GR      S FH +Q    + P +  +  
Sbjct: 462 FEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGR------SYFHSMQKDHGIVPIDDHY-- 513

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR- 346
                                            T +ID+Y++ G L +A E    +    
Sbjct: 514 ---------------------------------TCMIDLYSRSGKLKEAEEFIKQMPMHP 540

Query: 347 DVFVWSTMIAGFAMYG 362
           D   W T+++   + G
Sbjct: 541 DAIGWGTLLSACRLRG 556


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 321/568 (56%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ A ++FD++ + N+ TWN ++              +F ++ +   + P+EFT   V++
Sbjct: 39  LDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREM-HELGFLPDEFTLGSVLR 97

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             A L     G+ +H  V+K  +E +L + +SL H Y   G L     V   +  ++VV+
Sbjct: 98  GCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVA 157

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WN++I+G  Q G FE  ++LY  M+M  ++                              
Sbjct: 158 WNTLIAGNAQNGHFEGVLDLYNMMKMSGLR------------------------------ 187

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                       PD+ T VSV+S+ A+L  +  G QIHA+  K G      + +SLI MY
Sbjct: 188 ------------PDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMY 235

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCG L+ +++     +  D  +WS+MIA +  +G G EA+ LF +M++  +  N VTF 
Sbjct: 236 SKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFL 295

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
           ++L ACSH+GL ++G  FF  M   YG+ P ++HYTC+VD+LGR+G LDEA   I  MP+
Sbjct: 296 SLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPL 355

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
                +W  LL AC+IH N ++A      +L L P++    VLLSNI+A   +W +VS++
Sbjct: 356 EADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKV 415

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  MR   +KKEPG S +EV   + +F  G+ SHP+ +EI   L E++  +K  GYVP+ 
Sbjct: 416 RTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDT 475

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           + +    + E+ +E +L  HSE+LAIA+GL+++ P  PIR++KNLR+C DCH   KLIS 
Sbjct: 476 ATVFHDTDSEE-KENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISD 534

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + NREI++RD  RFHHF+ G CSC DYW
Sbjct: 535 INNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LI+ + + G+LD A++VF  +  R+V  W+ M++G   +      L LF  M E    P+
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPD 88

Query: 383 AVTFTNVLCACS 394
             T  +VL  C+
Sbjct: 89  EFTLGSVLRGCA 100


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 347/605 (57%), Gaps = 51/605 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q H + ++ GL  D   ++ L    A    S L   +++F  + + +  +WNT+I A +
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYA--ETSRLAECQKVFSWMLERDQVSWNTVIGALA 281

Query: 115 SSAEPI-QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
            S   + ++  +FL+++  + + PN  TF  ++   + L   ++   IH +++K + +DD
Sbjct: 282 DSGASVSEAIEVFLEMM-RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDD 340

Query: 174 LFISNSLIHFYAICGDLAMAYCVFV-MIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
             I N+L+  Y   G++     +F  M  ++D VSWNSMISG++      KA++L     
Sbjct: 341 NAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLV---- 396

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                       W          L + +    D FTF +VLSAC
Sbjct: 397 ----------------------------W----------LMMQRGQRLDCFTFATVLSAC 418

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A +  ++ G+++HA   +  ++ +  + ++L+DMY+KCG +D A   F+ +  R+++ W+
Sbjct: 419 ATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWN 478

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +MI+G+A +G G  AL LF+RM+ +   P+ +TF  VL ACSH GLVDEG  +F  M  V
Sbjct: 479 SMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEV 538

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC--KIHENVELA 470
           YG+VP V+HY+CMVD+LGRAG LD+   FI KMPI P   +W  +LGAC        EL 
Sbjct: 539 YGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELG 598

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
             A   L  ++P+N    VLLSN+YA  GKW++++  R+ MR + +KKE GCS + +   
Sbjct: 599 RRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDG 658

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H F+AG++SHP    IY+KL E+  +++  GYVP     L  +E E+ +E+ L+ HSE+
Sbjct: 659 VHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPEN-KEELLSYHSEK 717

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LA+A+ +++     PIRI+KNLRVCGDCH+  K ISK+ +R I+LRD  RFHHF  G CS
Sbjct: 718 LAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCS 776

Query: 651 CMDYW 655
           C DYW
Sbjct: 777 CRDYW 781



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 46/307 (14%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P  N  TW  LI  Y+ +  P  +  +  ++++   + PN F F   I+A  
Sbjct: 54  ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEG-FLPNRFAFGSAIRACQ 112

Query: 151 R-LVQFRVGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
             ++  R G+ +HG  I++   D  + + N LI+ YA CGD+  A  VF ++  KD VSW
Sbjct: 113 ESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSW 172

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           NSMI+G  Q   FE A++ Y  M    + P    +++ LS+C                  
Sbjct: 173 NSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSC------------------ 214

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                   A LG + +G Q H +  K G+ ++  ++ +L+ +Y 
Sbjct: 215 ------------------------ASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYA 250

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG-REALDLFSRMQEAKVKPNAVTFT 387
           +   L +  +VF  +  RD   W+T+I   A  G    EA+++F  M  A   PN VTF 
Sbjct: 251 ETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFI 310

Query: 388 NVLCACS 394
           N+L   S
Sbjct: 311 NLLATVS 317



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 42/239 (17%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H  V+K  F+ DLF+ N+LI+ Y   GD   A  +F  +  ++ V+W  +ISG+ Q G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281
           E A  + +EM  E   P+     + + AC      E   W  +                 
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQ-----ESMLWRRK----------------- 120

Query: 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVF 340
                              G Q+H    + G+      +   LI+MY KCG++D A  VF
Sbjct: 121 -------------------GRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVF 161

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
             +  +D   W++MI G     C  +A+  ++ M++  + P+     + L +C+  G +
Sbjct: 162 GLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCI 220


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 318/571 (55%), Gaps = 43/571 (7%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              LE AR++FD++PQ + ++WN  I  Y +  +P ++  +F  +  +     N+FT   
Sbjct: 166 LGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSS 225

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
            + A+A +   R+G+ IHG +I++    D  + ++L+  Y  CG L  A  +F  +  +D
Sbjct: 226 ALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRD 285

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           VVSW +MI    + G  E+   L+R++                                 
Sbjct: 286 VVSWTTMIHRCFEDGRREEGFLLFRDL--------------------------------- 312

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                    +   V P+E+TF  VL+ACA   A  +G ++H  M   G     +  ++L+
Sbjct: 313 ---------MQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALV 363

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY+KCGN   A  VF+ +   D+  W+++I G+A  G   EAL  F  + ++  KP+ V
Sbjct: 364 HMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQV 423

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL AC+H+GLVD+G  +F+ ++  +G++    HY C++D+L R+G   EA   I+ 
Sbjct: 424 TYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDN 483

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P   +W +LLG C+IH N+ELA+ A   L E+EPEN    + L+NIYA  G W  V
Sbjct: 484 MPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEV 543

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + +RK M   G+ K+PG S IE+  ++H FL G++SHP   +I+  L E+  ++K  GYV
Sbjct: 544 ANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYV 603

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +L  VEEE  +EQ L  HSE+LA+ +G+IS  P  PI++ KNLR C DCHT  K 
Sbjct: 604 PDTNFVLHDVEEEQ-KEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKY 662

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+  R+I +RD  RFH F  G+CSC DYW
Sbjct: 663 ISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 163/332 (49%), Gaps = 12/332 (3%)

Query: 127 LQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186
           ++L++ + + P+   +  +I A  R     +G+ +H     S+F   +FISN L+  YA 
Sbjct: 75  VELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAK 134

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG L  A  +F  +G +D+ SWN+MI G+ + G  E+A +L+ EM     + D  +  A 
Sbjct: 135 CGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMP----QRDNFSWNAA 190

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           +S             P EAL +F  +Q  +  + ++FT  S L+A A +  + +G +IH 
Sbjct: 191 ISGYVTHNQ------PREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHG 244

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            + +  + L+  + ++L+D+Y KCG+LD+A  +F  +K RDV  W+TMI      G   E
Sbjct: 245 YLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREE 304

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
              LF  + ++ V+PN  TF  VL AC+       G+     M    G  PG    + +V
Sbjct: 305 GFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAISALV 363

Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            M  + G    A     +M   P    W +L+
Sbjct: 364 HMYSKCGNTRVARRVFNEMH-QPDLVSWTSLI 394



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 161/352 (45%), Gaps = 54/352 (15%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K+IH  ++RT L  D    S L      G   SL+ AR +FDQ+   ++ +W T+I    
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLD--LYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCF 297

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
                 + F++F  L+  S   PNE+TF  V+ A A      +G+ +HG ++ + ++   
Sbjct: 298 EDGRREEGFLLFRDLM-QSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGS 356

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F  ++L+H Y+ CG+  +A  VF  + + D+VSW S+I G+ Q G  ++A+  +  +   
Sbjct: 357 FAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQS 416

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             KPD+VT V VLSA                                          C  
Sbjct: 417 GTKPDQVTYVGVLSA------------------------------------------CTH 434

Query: 295 LGAMDIGVQ-IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWS 352
            G +D G++  H+  +K G+         +ID+  + G   +A  +   +  + D F+W+
Sbjct: 435 AGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWA 494

Query: 353 TMIAGFAMYGCGREALDLFSRMQEA--KVKP-NAVTFTNVLCACSHSGLVDE 401
           +++ G  ++G     L+L  R  +A  +++P N  T+  +    +++GL  E
Sbjct: 495 SLLGGCRIHG----NLELAKRAAKALYEIEPENPATYITLANIYANAGLWSE 542


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/676 (34%), Positives = 340/676 (50%), Gaps = 119/676 (17%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE---MFDQIPQP-NLY 104
           K+  Q KQ+H Q+LRT L       S       L  +S+L    +   +F+ +P P    
Sbjct: 19  KSKSQAKQLHAQILRTSL------PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTL 72

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            W ++IR Y+S    + S   F+Q++ +  Y P+   FP V+K+   +   R G+++HG 
Sbjct: 73  AWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFGESVHGC 131

Query: 165 VIKSSFEDDLFISNSLIHFYAIC---------------GDLAMAYC-------------- 195
           +I+     DL+  N+L++ Y+                 G  +  Y               
Sbjct: 132 IIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK 191

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF M+ K+D+VSWN++ISG  Q G  E A+ + REM                        
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG----------------------- 228

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                              + ++ PD FT  SVL   A+   +  G +IH    + G   
Sbjct: 229 -------------------NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDA 269

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           + ++ +SLIDMY KC  +D +  VF+ +   D   W+++IAG    G   E L  F +M 
Sbjct: 270 DVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQML 329

Query: 376 EAKVKPNAVTFTN------------------------------------VLCACSHSGLV 399
            AK+KPN V+F++                                    VL ACSH+GLV
Sbjct: 330 IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLV 389

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           DE   +FN M   Y ++PG++HY  + D+LGR G L+EA EFI  M I P  SVW  LL 
Sbjct: 390 DEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLA 449

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC++H+N+ELAE     L  ++P+N GA VLLSNIY+  G+W +  +LR  MR  G+KK+
Sbjct: 450 ACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKK 509

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           P CS IE+  ++H F+AG+ SHP    I   L  ++ +++  GYV + + +L  VEEE  
Sbjct: 510 PACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQ- 568

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +   L  HSERLAI +G+IS      IR+ KNLRVC DCHT  K ISK+  REI++RD  
Sbjct: 569 KRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNS 628

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC D+W
Sbjct: 629 RFHHFKDGKCSCGDFW 644



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 171/352 (48%), Gaps = 40/352 (11%)

Query: 39  HPVF-SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSA-------SKLFTPCALGTFSS 87
           H VF S++K C  +K L+    +H  ++R G+ FD Y+        SK ++   + T+  
Sbjct: 106 HNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKK 165

Query: 88  --------------------LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
                               L   R++F+ +P+ ++ +WNT+I   + +     + M+  
Sbjct: 166 VFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVR 225

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
           ++  N+   P+ FT   V+   A  V    G+ IHG  I++ ++ D+FI +SLI  YA C
Sbjct: 226 EMG-NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKC 284

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
             +  +  VF M+ + D +SWNS+I+G VQ G F++ ++ +++M +  +KP+ V+  +++
Sbjct: 285 TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIM 344

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
            ACA    L  G+       +   +   + V P+   F++VL+AC+  G +D   +    
Sbjct: 345 PACAHLTTLHLGK------QLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNS 398

Query: 308 MKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV-FVWSTMIAG 357
           M +   I        ++ D+  + G L++A E    +       VWST++A 
Sbjct: 399 MTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 450


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 343/617 (55%), Gaps = 57/617 (9%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-PNLYTW 106
           C ++  + Q+H+  + +G  FD Y +         G    L+ A+ +F  +    +  +W
Sbjct: 151 CDDVGLIGQLHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N++I AY    E  ++  +F ++V       + FT   V+ A   L     G   HG +I
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNV-DMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYC--VFVMIGKKDVVSWNSMISGFVQGG-FFEK 223
           K+ F  +  + + LI  Y+ CG   M+ C  VF  I + D+V WN+M+SG+ Q   F E 
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGG-GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+E +R+  M+ +                                           P++ 
Sbjct: 327 ALECFRQ--MQGI----------------------------------------GYRPNDC 344

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHT 342
           +FV V+SAC+ L +   G QIH+   K  I  N   +  +LI MY+KCGNL  A  +F  
Sbjct: 345 SFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +   +    ++MIAG+A +G   E+L LF  M E ++ P ++TF +VL AC+H+G V+EG
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
             +FN M+  + + P  +HY+CM+D+LGRAG L EA   I +MP  PG+  W +LLGAC+
Sbjct: 465 WNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACR 524

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H N+ELA  A + +L+LEP N    V+LSN+YA  G+W+ V+ +RK MR  G+KK+PGC
Sbjct: 525 THGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGC 584

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV--- 579
           S IEV   IH F+A +SSHP+ KEIY  L+E+  ++K  GYVP+      LV+++     
Sbjct: 585 SWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR--WALVKDDGTRGG 642

Query: 580 -QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E  L  HSE+LA+A+GLIS +  +P+ +VKNLR+CGDCH   K IS +  REI +RD 
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 639 YRFHHFRGGNCSCMDYW 655
           +RFH F+ G CSC DYW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 196/443 (44%), Gaps = 92/443 (20%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASK---LFTPCALGTFSSLEYAREMFDQ 97
           L+K C   +++   K +H+  +++ +    Y ++    L++ C       L +AR+ F  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCG-----RLAWARKAFQD 68

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL------VYN---SPYFP----------- 137
           I  PN++++N +I AY+  + P+ +  +F Q+       YN   S Y             
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 138 ----------NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
                     + FT   VI A    V   +GQ +H + + S F+  + ++N+L+ +Y   
Sbjct: 129 SGMREMGLDMDXFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKN 186

Query: 188 GDLAMAYCVFV-MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           GDL  A  VF  M G +D VSWNSMI  + Q     KA+ L++EM    +  D  T+ +V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           L+A                                 FT +  LS          G+Q H 
Sbjct: 247 LTA---------------------------------FTCLEDLSG---------GLQFHG 264

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKC-GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
           ++ K G   N ++ + LID+Y+KC G +    +VF  +   D+ +W+TM++G++      
Sbjct: 265 QLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFL 324

Query: 366 E-ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHY 422
           E AL+ F +MQ    +PN  +F  V+ ACS+     +G+   +    +   +P   +   
Sbjct: 325 EDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL--ALKSDIPSNRISVD 382

Query: 423 TCMVDMLGRAGLLDEAVEFIEKM 445
             ++ M  + G L +A    ++M
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRM 405



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  ++K          G+++H + IKS      + SN  I  Y+ CG LA A   F  I 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             +V S+N++I+ + +      A +L+ ++     +PD V+   ++SA A   +      
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETA---- 122

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQGIKLNCYL 319
              AL +F  ++    ++ D FT  +V++AC      D+G+  Q+H+     G      +
Sbjct: 123 --PALGLFSGMR-EMGLDMDXFTLSAVITACCD----DVGLIGQLHSVAVSSGFDSYVSV 175

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
             +L+  Y K G+LD A  VF+ +   RD   W++MI  +  +  G +AL LF  M    
Sbjct: 176 NNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG 235

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +  +  T  +VL A +    +  G  F  Q+
Sbjct: 236 LNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 343/617 (55%), Gaps = 57/617 (9%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-PNLYTW 106
           C ++  + Q+H+  + +G  FD Y +         G    L+ A+ +F  +    +  +W
Sbjct: 151 CDDVGLIGQLHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N++I AY    E  ++  +F ++V       + FT   V+ A   L     G   HG +I
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNV-DMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYC--VFVMIGKKDVVSWNSMISGFVQGG-FFEK 223
           K+ F  +  + + LI  Y+ CG   M+ C  VF  I + D+V WN+M+SG+ Q   F E 
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGG-GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+E +R+  M+ +                                           P++ 
Sbjct: 327 ALECFRQ--MQGI----------------------------------------GYRPNDC 344

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHT 342
           +FV V+SAC+ L +   G QIH+   K  I  N   +  +LI MY+KCGNL  A  +F  
Sbjct: 345 SFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +   +    ++MIAG+A +G   E+L LF  M E ++ P ++TF +VL AC+H+G V+EG
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
             +FN M+  + + P  +HY+CM+D+LGRAG L EA   I +MP  PG+  W +LLGAC+
Sbjct: 465 WNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACR 524

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H N+ELA  A + +L+LEP N    V+LSN+YA  G+W+ V+ +RK MR  G+KK+PGC
Sbjct: 525 THGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGC 584

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV--- 579
           S IEV   IH F+A +SSHP+ KEIY  L+E+  ++K  GYVP+      LV+++     
Sbjct: 585 SWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVR--WALVKDDGTRGG 642

Query: 580 -QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E  L  HSE+LA+A+GLIS +  +P+ +VKNLR+CGDCH   K IS +  REI +RD 
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 639 YRFHHFRGGNCSCMDYW 655
           +RFH F+ G CSC DYW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 196/443 (44%), Gaps = 92/443 (20%)

Query: 44  LIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASK---LFTPCALGTFSSLEYAREMFDQ 97
           L+K C   +++   K +H+  +++ +    Y ++    L++ C       L +AR+ F  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCG-----RLAWARKAFQD 68

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL------VYN---SPYFP----------- 137
           I  PN++++N +I AY+  + P+ +  +F Q+       YN   S Y             
Sbjct: 69  ISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLF 128

Query: 138 ----------NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
                     + FT   VI A    V   +GQ +H + + S F+  + ++N+L+ +Y   
Sbjct: 129 SGMREMGLDMDGFTLSAVITACCDDVGL-IGQ-LHSVAVSSGFDSYVSVNNALLTYYGKN 186

Query: 188 GDLAMAYCVFV-MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           GDL  A  VF  M G +D VSWNSMI  + Q     KA+ L++EM    +  D  T+ +V
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           L+A                                 FT +  LS          G+Q H 
Sbjct: 247 LTA---------------------------------FTCLEDLSG---------GLQFHG 264

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKC-GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
           ++ K G   N ++ + LID+Y+KC G +    +VF  +   D+ +W+TM++G++      
Sbjct: 265 QLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFL 324

Query: 366 E-ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHY 422
           E AL+ F +MQ    +PN  +F  V+ ACS+     +G+   +    +   +P   +   
Sbjct: 325 EDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL--ALKSDIPSNRISVD 382

Query: 423 TCMVDMLGRAGLLDEAVEFIEKM 445
             ++ M  + G L +A    ++M
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRM 405



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  ++K          G+++H + IKS      + SN  I  Y+ CG LA A   F  I 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             +V S+N++I+ + +      A +L+ ++     +PD V+   ++SA A   +      
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETA---- 122

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQGIKLNCYL 319
              AL +F  ++    ++ D FT  +V++AC      D+G+  Q+H+     G      +
Sbjct: 123 --PALGLFSGMR-EMGLDMDGFTLSAVITACCD----DVGLIGQLHSVAVSSGFDSYVSV 175

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
             +L+  Y K G+LD A  VF+ +   RD   W++MI  +  +  G +AL LF  M    
Sbjct: 176 NNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG 235

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           +  +  T  +VL A +    +  G  F  Q+
Sbjct: 236 LNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 314/570 (55%), Gaps = 44/570 (7%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
             L  ARE+FD++P  N+ TWN ++   ++      S   FL +     + P+EF    V
Sbjct: 122 GDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMH-PDEFGLGSV 180

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
            +  A L+    G+ +H  V++S  + D+ + NSL H Y  CG LA    V   +    +
Sbjct: 181 FRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTI 240

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VS+N+ I+G  Q G  E A+E +  M                      R +E        
Sbjct: 241 VSFNTTIAGRTQNGDSEGALEYFSMM----------------------RGVE-------- 270

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                       V PD  TFVS +S C+ L A+  G Q+HA++ K G+     + TSL+ 
Sbjct: 271 ------------VAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVH 318

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY++CG L  +  V+      D+F+ S MI+    +G G +A++LF +M     +PN VT
Sbjct: 319 MYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVT 378

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  +L ACSHSGL DEG  FF  M   YG  P VKHY C+VD+LGR+G LDEA   I  M
Sbjct: 379 FLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSM 438

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P+     +W  LL ACK  +N ++AE     ++E +P +    VLLSNI A + +W +V+
Sbjct: 439 PVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVT 498

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
           E+RK MR   ++KEPG S +E  G++H+F  G+ SHP   EI   L E++ +++  GY P
Sbjct: 499 EVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAP 558

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           + + +   +E+E+ +E +L  HSE+LAIA+  +++    PIR++KNLRVC DCH   KLI
Sbjct: 559 DMTMVFHDMEDEE-KEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLI 617

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S++  REI++RD  RFHHFR G CSC DYW
Sbjct: 618 SQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 131/268 (48%), Gaps = 16/268 (5%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D F +N+L+  YA  GDL  A  +F  I K++V+SWN +I G ++ G    A EL+ +M 
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
             NV      MVA L+      D         +L  F  ++  + ++PDEF   SV   C
Sbjct: 136 TRNVATWN-AMVAGLTNVGLDED---------SLQFFLAMR-REGMHPDEFGLGSVFRCC 184

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           A L  +  G Q+HA + + G+  +  +  SL  MY +CG L +   V   + S  +  ++
Sbjct: 185 AGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFN 244

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM--E 410
           T IAG    G    AL+ FS M+  +V P+ VTF + +  CS    + +G+    Q+   
Sbjct: 245 TTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKA 304

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
            V  VVP +   T +V M  R G L ++
Sbjct: 305 GVDKVVPVI---TSLVHMYSRCGCLGDS 329



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D   F  +  AC    A+ +  Q+HA     G   + + T +L+  Y   G+L  A  +F
Sbjct: 44  DASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLF 100

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  R+V  W+ +I G    G    A +LF +M       N  T+  ++   ++ GL +
Sbjct: 101 EGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP----TRNVATWNAMVAGLTNVGLDE 156

Query: 401 EGRMFFNQME 410
           +   FF  M 
Sbjct: 157 DSLQFFLAMR 166


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 334/608 (54%), Gaps = 61/608 (10%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTF---SSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQIH   ++T    D + ++ L    +       + + + R  FD      L  WN ++ 
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMS 497

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+ S +  ++  +F  L++      ++FT   V+K    L     G+ +H   IKS ++
Sbjct: 498 GYTQSHDGHKTLELF-ALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYD 556

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            DL++S+ ++  Y  CGD++ A   F  I                               
Sbjct: 557 LDLWVSSGILDMYVKCGDMSAAQFAFDSIPV----------------------------- 587

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                 PD+V    ++S C +  + E       AL +F +++L   V PDEFT  ++  A
Sbjct: 588 ------PDDVAWTTLISGCIENGEEE------RALHVFSQMRL-MGVLPDEFTIATLAKA 634

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
            + L A++ G QIHA      +KLNC    ++ TSL+DMY KCG++D A  +F  ++  +
Sbjct: 635 SSCLTALEQGRQIHA----NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN 690

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+ M+ G A +G G+EAL LF +M+   +KP+ VTF  VL ACSHSGLV E   +  
Sbjct: 691 ITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIR 750

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M   YG+ P ++HY+C+ D LGRAGL+ EA   I+ M +   AS++  LL AC++  + 
Sbjct: 751 SMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDT 810

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           E  +   + LLELEP +  A VLLSN+YA   KWD +   R  M+   +KK+PG S IEV
Sbjct: 811 ETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 870

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
             +IH F+  + S+P  + IY K+ +++  +K  GYVP     L  VEEE+ +E+AL  H
Sbjct: 871 KNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEE-KERALYYH 929

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE+LA+A+GL+S  PS PIR++KNLRVCGDCH   K ISK+Y+REI+LRD  RFH F+ G
Sbjct: 930 SEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDG 989

Query: 648 NCSCMDYW 655
            CSC DYW
Sbjct: 990 ICSCGDYW 997



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 185/413 (44%), Gaps = 66/413 (15%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N ++  Y  + +       F+ +V  S    ++ TF  V+  A RL    +GQ +H M +
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMV-ESDLECDQVTFILVLATAVRLDSLALGQQVHCMAL 349

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K   +  L +SNSLI+ Y     + +A  VF  + ++D++SWNS+I+G  Q     +A+ 
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409

Query: 227 LYREMEMENVKPDEVTMVAVLSA------------------------------------- 249
           L+ ++    +KPD  TM +VL A                                     
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAY 469

Query: 250 ----CAKKRDLEFGR-------W------------PNEALSIFHELQLSKNVNPDEFTFV 286
               C K+ ++ FGR       W             ++ L +F  L   +    D+FT  
Sbjct: 470 SRNRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELF-ALMHKQGERSDDFTLA 528

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +VL  C  L A++ G Q+HA   K G  L+ ++++ ++DMY KCG++  A   F ++   
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP 588

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           D   W+T+I+G    G    AL +FS+M+   V P+  T   +  A S    +++GR   
Sbjct: 589 DDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 407 -NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
            N ++      P V   T +VDM  + G +D+A    +++ ++   + W A+L
Sbjct: 649 ANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAML 698



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 169/340 (49%), Gaps = 33/340 (9%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI-----QSFMIFLQLVYNSPYFPNEFT 141
           SL YAR +FD++P+ +L +WN+++ AY+ S+E +     ++F++F +++     + +  T
Sbjct: 96  SLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLF-RILRQDVVYTSRMT 154

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++K           ++ HG   K   + D F++ +L++ Y   G +     +F  + 
Sbjct: 155 LSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMP 214

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL------SACAKKRD 255
            +DVV WN M+  +++ GF E+AI+L        + P+E+T+  +       S   + + 
Sbjct: 215 YRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKS 274

Query: 256 LEFGRWP---------NEALSIF-HELQLS-----------KNVNPDEFTFVSVLSACAQ 294
            E G            N+ LS + H  Q S            ++  D+ TF+ VL+   +
Sbjct: 275 FENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVR 334

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L ++ +G Q+H    K G+ L   ++ SLI+MY K   +  A  VF+ +  RD+  W+++
Sbjct: 335 LDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSV 394

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           IAG A      EA+ LF ++    +KP+  T T+VL A S
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 12/226 (5%)

Query: 32  NGHQHHPHPVFSLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTF 85
            G +     + +++K C     I Q KQ+H   +++G   D + +S    ++  C  G  
Sbjct: 518 QGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC--GDM 575

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S+ ++A   FD IP P+   W TLI     + E  ++  +F Q+       P+EFT   +
Sbjct: 576 SAAQFA---FDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMG-VLPDEFTIATL 631

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
            KA++ L     G+ IH   +K +   D F+  SL+  YA CG +  AYC+F  I   ++
Sbjct: 632 AKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 691

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            +WN+M+ G  Q G  ++A++L+++ME   +KPD+VT + VLSAC+
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACS 737



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 37/241 (15%)

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           ++ A       +G+  H  ++      + F+ N+LI  Y+ CG L  A  VF  + ++D+
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDL 112

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           VSWNS+++ + Q            E  +ENVK                          EA
Sbjct: 113 VSWNSILAAYAQSS----------EGVVENVK--------------------------EA 136

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
             +F  L+    V     T   +L  C   G +      H    K G+  + ++  +L++
Sbjct: 137 FLLFRILR-QDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVN 195

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           +Y K G + +   +F  +  RDV +W+ M+  +   G   EA+DL S    + + PN +T
Sbjct: 196 IYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT 255

Query: 386 F 386
            
Sbjct: 256 L 256



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG-----REALDLFS 372
           +L  +LI MY+KCG+L  A  VF  +  RD+  W++++A +A    G     +EA  LF 
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFR 141

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLV 399
            +++  V  + +T + +L  C HSG V
Sbjct: 142 ILRQDVVYTSRMTLSPMLKLCLHSGYV 168


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/622 (36%), Positives = 354/622 (56%), Gaps = 16/622 (2%)

Query: 36  HHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMF 95
           H+ H +  L  + + +   K +H  +++ G+      A+ L      G   +  +A ++F
Sbjct: 5   HYLHQL-QLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVN--VYGKCGAASHALQVF 61

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           D++P  +   W +++ A + +    ++  +F  +  +S   P++F F  ++KA A L   
Sbjct: 62  DEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSI 121

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ +H   I S + +D  + +SL+  YA CG L  A  VF  I  K+ +SW +M+SG+
Sbjct: 122 DHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGY 181

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            + G  E+A+EL+R + ++N+     +  A++S   +      G+   EA S+F E++  
Sbjct: 182 AKSGRKEEALELFRILPVKNL----YSWTALISGFVQS-----GK-GLEAFSVFTEMRRE 231

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           +    D     S++ ACA L A   G Q+H  +   G     +++ +LIDMY KC ++  
Sbjct: 232 RVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIA 291

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A ++F  ++ RDV  W+++I G A +G   +AL L+  M    VKPN VTF  ++ ACSH
Sbjct: 292 AKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 351

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G V++GR  F  M   YG+ P ++HYTC++D+LGR+GLLDEA   I  MP  P    W 
Sbjct: 352 VGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWA 411

Query: 456 ALLGACKIHENVELAEYACSHLL-ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           ALL ACK     ++      HL+   + ++    +LLSNIYA    W  VSE R+ +   
Sbjct: 412 ALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEM 471

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK-SFGYVPNRSHLLQL 573
            ++K+PG SS+EV  E   F AGE+SHPL ++I+  L ++   ++   GYVP+ S +L  
Sbjct: 472 EVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHD 531

Query: 574 VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           ++E++ +E+ L  HSER A+AYGL+   P  PIRIVKNLRVCGDCH V K IS++  REI
Sbjct: 532 MDEQE-KEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREI 590

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RD  R+HHF+GG CSC D+W
Sbjct: 591 IVRDATRYHHFKGGKCSCNDFW 612


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 326/610 (53%), Gaps = 65/610 (10%)

Query: 55  KQIHTQMLRTGLFFDP---YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQIH+  +R+GL  +     + S ++  C       LE A  +F+++ + N   W  ++ 
Sbjct: 131 KQIHSHAIRSGLGSNASVNTAISNMYVKCGW-----LEGAELVFEKMSEKNAVAWTGIMV 185

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y+ +   + +  +F ++V N     +E+ F  V+KA A L +   G+ IHG ++K   E
Sbjct: 186 GYTQAERQMDALALFAKMV-NEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLE 244

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            ++ +   L+ FY  C +L  A   F  I + + VSW+++I+G+ Q G FE+A++ +  +
Sbjct: 245 SEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESL 304

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
              +V  +  T  ++  AC+             AL+ F+                     
Sbjct: 305 RTRSVDINSFTYTSIFQACS-------------ALADFNS-------------------- 331

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
                    G Q HA   K  +    +  +++I MY++CG LD A  VF ++   D   W
Sbjct: 332 ---------GAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAW 382

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + +IAG+A  G   EAL LF RMQ+  V+PNAVTF  VL ACSHSGLV EGR +   M  
Sbjct: 383 TAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSS 442

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            YGV   + HY CMVD+  RAG L EA+E I  MP  P A  W  LLG C  + N+E+ E
Sbjct: 443 NYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGE 502

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A  +L +L+PE+    +L+ N+YA  GKW   + +RK M    L+KE  CS I V G++
Sbjct: 503 LAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKV 562

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV------QEQALN 585
           H+F+ G+  HP  +EIYSKL+ +   +     +   + LL    EEDV      +++ L 
Sbjct: 563 HRFIVGDKHHPQTEEIYSKLEALNDSV-----IKEETGLLT---EEDVSNSLPERKEQLL 614

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
           +HSERLA+A+GLIS   S P+ + KNLR C DCH   K +S +  REI++RD +RFHHF+
Sbjct: 615 VHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFK 674

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 675 LGECSCNDYW 684



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 144/326 (44%), Gaps = 45/326 (13%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           ++  + +A  ++     G+  H  + ++      F+ NS++  Y  CG LA A  VF  +
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            ++++VSWN++IS + + G F+K   ++  M     KP+  T +  L      R L    
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL------RSL---- 121

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                            +NP                 ++IG QIH+   + G+  N  + 
Sbjct: 122 -----------------LNPS---------------GLEIGKQIHSHAIRSGLGSNASVN 149

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T++ +MY KCG L+ A  VF  +  ++   W+ ++ G+       +AL LF++M    V+
Sbjct: 150 TAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVE 209

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
            +   F+ VL AC+    ++ GR     +  + G+   V   T +VD   +   L+ A +
Sbjct: 210 LDEYVFSIVLKACAGLEELNFGRQIHGHIVKL-GLESEVSVGTPLVDFYVKCSNLESATK 268

Query: 441 FIEKMPIVPGASVWGALL-GACKIHE 465
             E +   P    W AL+ G C++ E
Sbjct: 269 AFEWIS-EPNDVSWSALITGYCQMGE 293



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 24/231 (10%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           ++  +  AC ++ ++  G   H +M++       +L  S++ MY KCG+L  A +VF  +
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           + R++  W+T+I+ +A  G   +   +FS M E + KPN  T+   L +  +   ++ G+
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGK 131

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG---- 459
              +      G+       T + +M  + G L+ A    EKM      +  G ++G    
Sbjct: 132 QIHSHA-IRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQA 190

Query: 460 ----------ACKIHENVELAEY-------ACSHLLELE--PENHGALVLL 491
                     A  ++E VEL EY       AC+ L EL    + HG +V L
Sbjct: 191 ERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKL 241


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/536 (39%), Positives = 310/536 (57%), Gaps = 36/536 (6%)

Query: 122 SFMIFLQLVYNSPYF--PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
           S    L L  +SP    PN FT+P + +AA   +   +       +   +   D  +  +
Sbjct: 123 SLYALLFLSSSSPPLLRPNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVLGAA 182

Query: 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239
           L+  +A CG +A    VF  I   D+ +WN+++S + +                      
Sbjct: 183 LLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYAR---------------------- 220

Query: 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMD 299
                       + RD+       +A+       LS  + P+E T V+V+ AC +LGA+ 
Sbjct: 221 -----------LRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVS 269

Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
            GV  H    K+ + +NC + T+L++MY  CG LD A +VF     RD   ++ M+ G A
Sbjct: 270 HGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLA 329

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419
           ++G GR AL LF RM    V  + VT  +V+CAC+H+GLVDEG  +F++ME  +G+ P +
Sbjct: 330 VHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSI 389

Query: 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +HY CMVDML RAG L++A + I  MPIVP A+++ +L+ AC IH  +EL +   + L+ 
Sbjct: 390 EHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMR 449

Query: 480 LEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES 539
           LEP++ G  VL+SN YA T +WD+  + RK M+  G+ K PG S +++NG +H+FL G+ 
Sbjct: 450 LEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDK 509

Query: 540 SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLIS 599
           +HP  KEIY+ +++I  RL   G+  + S  L  VEEED +  AL+ HSERLAIA+ LI+
Sbjct: 510 THPASKEIYAMVEDIETRLSECGHRSSTSSALFDVEEED-KADALSYHSERLAIAFALIA 568

Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             P  PIRI+KNLRVC DCH  AKL+S++Y REI++RDR RFHHFR G CSC D+W
Sbjct: 569 SNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 50/261 (19%)

Query: 92  REMFDQIPQPNLYTWNTLIRAY-----------SSSAEPI-QSFMIFLQLVYNSPYFPNE 139
           R++FD+I  P+L  WN L+ AY           SS+A+ I + F+  L L       PNE
Sbjct: 197 RKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIK----PNE 252

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T   VI A   L     G   H   +K     +  ++ +L+  YA CG L +A  VF  
Sbjct: 253 ITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAA 312

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA-------- 251
              +D   +N+M+ G    G    A+ L+  M  E V  D VT+++V+ ACA        
Sbjct: 313 ASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEG 372

Query: 252 ----KKRDLEFGRWP------------------NEALSIFHELQLSKNVNPDEFTFVSVL 289
                + ++EFG  P                  N+A  + H +     + P+   + S++
Sbjct: 373 LDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMP----IVPNAAIYRSLI 428

Query: 290 SACAQLGAMDIGVQIHAKMKK 310
            AC   G +++G ++ A++ +
Sbjct: 429 RACGIHGKLELGKKMIAELMR 449



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 13/152 (8%)

Query: 264 EALSIFHELQLSKN----VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
            ALS++  L LS +    + P+ FT+  +  A     A+ +       +       +  L
Sbjct: 120 SALSLYALLFLSSSSPPLLRPNAFTYPPLFRAAPPALALALATHSIKFLGAHAASCDRVL 179

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY-----GCGREA----LDL 370
             +L+D++ +CG +    +VF  + + D+  W+ +++ +A        C   A    L++
Sbjct: 180 GAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEM 239

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           F RM    +KPN +T   V+ AC   G V  G
Sbjct: 240 FVRMLSLAIKPNEITLVAVIGACGELGAVSHG 271


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/516 (39%), Positives = 318/516 (61%), Gaps = 17/516 (3%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNL 103
           ++K C NI +LK+IH  +++  L    +  +K+   C    +   EYA  +F  +  PN 
Sbjct: 20  ILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVC--NHYGETEYANLLFKGVADPNA 77

Query: 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYN----SPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + +N +IRAY  +   + +  ++ Q++ N    +P FP++FTFPFV+K+ A L+ + +G+
Sbjct: 78  FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG V K   + +  + NSL+  Y  C  L  A+ VF  + ++D VSWN++ISG V+ G
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLG 197

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
              +A  ++ EM+ + +     +  A++S  A+      G +  +AL  F  +Q+   + 
Sbjct: 198 QMRRARAIFEEMQDKTI----FSWTAIVSGYAR-----IGCYA-DALEFFRRMQMV-GIE 246

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PDE + VSVL  CAQLGA+++G  IH    K G   N  +  +LI+MY KCG++D+   +
Sbjct: 247 PDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRL 306

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +K RDV  WSTMI G A +G  REA++LF  MQ+AK++P+ +TF  +L AC+H+GL+
Sbjct: 307 FDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLL 366

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLG 459
           +EG  +F  M+  Y + PGV+HY C+V++LG +G LD+A+E ++KMP  P + +WG+LL 
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLS 426

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           +C+ H N+++A  A  HLLELEP + G  VLLSN+YA  GKWD VS +RK MR   +KK 
Sbjct: 427 SCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKT 486

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIV 555
           PGCSSIEV+  + +F +G+ S P  K I   L  +V
Sbjct: 487 PGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLV 522


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/595 (38%), Positives = 352/595 (59%), Gaps = 22/595 (3%)

Query: 66  LFFDPYSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           + F+   A  + T  ++ T       LE AR  FD++P+ ++ +WN +  AY+    P +
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           +  +F Q++      P++ T+   I + + +    +  +I  M+ +     + F+  +L+
Sbjct: 242 ALNLFHQML-EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300

Query: 182 HFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
             +A  G+L +A  +F  +G +++ V+WN MIS + + G    A EL+  M     K D 
Sbjct: 301 DMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMP----KRDV 356

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
           V+  ++++  A+  +         ++ +F E+    ++ PDE T  SVLSAC  +GA+ +
Sbjct: 357 VSWNSMIAGYAQNGESAM------SIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
              +   ++++ IKL      SLI MY+KCG++  A  +F T+ +RDV  ++T+I+GFA 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA 470

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G G+EA+ L   M+E  ++P+ VT+  VL ACSH+GL++EG+  F  ++      P V 
Sbjct: 471 NGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVD 525

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVD+LGRAG LDEA   I+ MP+ P A V+G+LL A +IH+ V L E A S L EL
Sbjct: 526 HYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL 585

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           EP+N G  VLLSNIYA  G+W++V  +R+ M+  GLKK  G S +E  G++HKF  G+ S
Sbjct: 586 EPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRS 645

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           H   K+IY  L E+  ++K  G+V ++S  L+ VEEE  +E+ L  HSE+LAI + L+  
Sbjct: 646 HEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEE-EKEEMLGTHSEKLAICFALLIS 704

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           E    IR+VKNLR+C DCHT  K+ISKL  REI++RD  RFH F  G CSC DYW
Sbjct: 705 EVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 205/465 (44%), Gaps = 71/465 (15%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           + + +L  +  NI+QL+Q H  ++   L    Y  S L   C     +   Y   +F   
Sbjct: 2   YELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTR-LHAHPAYVDSIFTSS 60

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P P+   ++ +++ YS      Q   +F +  ++    P  F + ++IK A      + G
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAG-----KSG 114

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
              H  V+K    DD FI N+++  YA  G + +A  +F  + ++ +  WNSMISG  + 
Sbjct: 115 NMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W---- 261
           G   +A+ L+  M   N+    +T  ++++  AK  DLE  R             W    
Sbjct: 175 GNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 262 --------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                   P EAL++FH++ L + + PD+ T+V  +S+C+ +G   +   I   + ++ I
Sbjct: 231 SAYAQKECPKEALNLFHQM-LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 314 KLNCYLTTSLIDM--------------------------------YTKCGNLDKALEVFH 341
            LN ++ T+L+DM                                YT+ G L  A E+F 
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSHSGLVD 400
            +  RDV  W++MIAG+A  G    +++LF  M     ++P+ VT  +VL AC H G + 
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                 + +     +  G+  +  ++ M  + G + +A    + M
Sbjct: 410 LSYWVLDIVRE-KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 136/347 (39%), Gaps = 47/347 (13%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           ++  A+++   R  +  HG ++ +S    + ++S  LI+   +    A    +F      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D   ++ M+  + + G   + + L++     N++P     + ++    K  ++       
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNM------- 116

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK--------- 314
                FH   L      D F   ++L   A+ G +D+   +  +M ++ +          
Sbjct: 117 -----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171

Query: 315 ------------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
                              N    TS++  Y K G+L+ A   F  +  R V  W+ M +
Sbjct: 172 WKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQS 231

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVY 413
            +A   C +EAL+LF +M E  + P+  T+   + +CS  G   L D      +Q   V 
Sbjct: 232 AYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVL 291

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                VK  T ++DM  + G L+ A    +++     A  W  ++ A
Sbjct: 292 NSF--VK--TALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISA 334


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 325/571 (56%), Gaps = 25/571 (4%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FD IP P+  ++NTL+  + +  +   ++ +F  +        N         
Sbjct: 57  LADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKN 116

Query: 148 AAARLVQ--FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-D 204
            A    +  FR   A + +             N+++   A  GD+  A  +F    +K D
Sbjct: 117 GAIEEAEAMFRAMPARNAVSW-----------NAMVAARASSGDMGAAENLFRNAPEKTD 165

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            + W +M+SG++  G  +KA+E +R M + N+    V+  AV++   K           +
Sbjct: 166 AILWTAMVSGYMDTGNVQKAMEYFRAMPVRNL----VSWNAVVAGYVKNSR------AGD 215

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F  +     V P+  T  SVL  C+ L A+  G Q+H    K  +  +  + TSL+
Sbjct: 216 ALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLL 275

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY KCG+LD A ++F  + ++D+  W+ MI+G+A +G GR+A+ LF +M++  V P+ +
Sbjct: 276 SMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWI 335

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL AC H+GL D G   F  M+  Y + P V HY+CMVD+L RAGLL+ AV  I  
Sbjct: 336 TLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHS 395

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP  P  S +G LL AC++++N+E AE+A   L+E +P+N GA V L+NIYA   +WD+V
Sbjct: 396 MPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDV 455

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           S +R+ M+ + + K PG S +E+ G  H+F + +  HP    I+ KLD +   +K+ GY 
Sbjct: 456 SRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYS 515

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+    L  VEE  ++ Q L  HSE+LAIA+GLIS  P   +RI KNLR+CGDCH  AKL
Sbjct: 516 PDLDFALHDVEES-LKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKL 574

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI+LRD  RFHHFRGG+CSC DYW
Sbjct: 575 ISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 6/194 (3%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +++ A E F  +P  NL +WN ++  Y  ++    +  +F  +V ++   PN  T   V+
Sbjct: 181 NVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVL 240

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
              + L     G+ +H   +K      + +  SL+  Y  CGDL  A  +F  +  KD+V
Sbjct: 241 LGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIV 300

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +WN+MISG+ Q G   KAI+L+ +M+ E V PD +T++AVL+AC      +FG      +
Sbjct: 301 AWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG------I 354

Query: 267 SIFHELQLSKNVNP 280
             F  +Q + N+ P
Sbjct: 355 QCFETMQEAYNIEP 368


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/595 (38%), Positives = 352/595 (59%), Gaps = 22/595 (3%)

Query: 66  LFFDPYSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ 121
           + F+   A  + T  ++ T       LE AR  FD++P+ ++ +WN +  AY+    P +
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241

Query: 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181
           +  +F Q++      P++ T+   I + + +    +  +I  M+ +     + F+  +L+
Sbjct: 242 ALNLFHQML-EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300

Query: 182 HFYAICGDLAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
             +A  G+L +A  +F  +G +++ V+WN MIS + + G    A EL+  M     K D 
Sbjct: 301 DMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMP----KRDV 356

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
           V+  ++++  A+  +         ++ +F E+    ++ PDE T  SVLSAC  +GA+ +
Sbjct: 357 VSWNSMIAGYAQNGESAM------SIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
              +   ++++ IKL      SLI MY+KCG++  A  +F T+ +RDV  ++T+I+GFA 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA 470

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G G+EA+ L   M+E  ++P+ VT+  VL ACSH+GL++EG+  F  ++      P V 
Sbjct: 471 NGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVD 525

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CMVD+LGRAG LDEA   I+ MP+ P A V+G+LL A +IH+ V L E A S L EL
Sbjct: 526 HYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFEL 585

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           EP+N G  VLLSNIYA  G+W++V  +R+ M+  GLKK  G S +E  G++HKF  G+ S
Sbjct: 586 EPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRS 645

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           H   K+IY  L E+  ++K  G+V ++S  L+ VEEE  +E+ L  HSE+LAI + L+  
Sbjct: 646 HEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEE-EKEEMLGTHSEKLAICFALLIS 704

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           E    IR+VKNLR+C DCHT  K+ISKL  REI++RD  RFH F  G CSC DYW
Sbjct: 705 EVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 205/465 (44%), Gaps = 71/465 (15%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           + + +L  +  NI+QL+Q H  ++   L    Y  S L   C     +   Y   +F   
Sbjct: 2   YELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTR-LHAHPAYVDSIFTSS 60

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P P+   ++ +++ YS      Q   +F +  ++    P  F + ++IK A      + G
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLF-KCTHSLNLRPQPFVYIYLIKLAG-----KSG 114

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
              H  V+K    DD FI N+++  YA  G + +A  +F  + ++ +  WNSMISG  + 
Sbjct: 115 NLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W---- 261
           G   +A+ L+  M   N+    +T  ++++  AK  DLE  R             W    
Sbjct: 175 GNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 262 --------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                   P EAL++FH++ L + + PD+ T+V  +S+C+ +G   +   I   + ++ I
Sbjct: 231 SAYAQKECPKEALNLFHQM-LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 314 KLNCYLTTSLIDM--------------------------------YTKCGNLDKALEVFH 341
            LN ++ T+L+DM                                YT+ G L  A E+F 
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 342 TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSHSGLVD 400
            +  RDV  W++MIAG+A  G    +++LF  M     ++P+ VT  +VL AC H G + 
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
                 + +     +  G+  +  ++ M  + G + +A    + M
Sbjct: 410 LSYWVLDIVRE-KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 47/347 (13%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           ++  A+++   R  +  HG ++ +S    + ++S  LI+   +    A    +F      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D   ++ M+  + + G   + + L++     N++P     + ++    K  +L       
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNL------- 116

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK--------- 314
                FH   L      D F   ++L   A+ G +D+   +  +M ++ +          
Sbjct: 117 -----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171

Query: 315 ------------------LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
                              N    TS++  Y K G+L+ A   F  +  R V  W+ M +
Sbjct: 172 WKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQS 231

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVY 413
            +A   C +EAL+LF +M E  + P+  T+   + +CS  G   L D      +Q   V 
Sbjct: 232 AYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVL 291

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
                VK  T ++DM  + G L+ A    +++     A  W  ++ A
Sbjct: 292 NSF--VK--TALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISA 334


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 350/610 (57%), Gaps = 49/610 (8%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY-AREMFDQIPQPNLYT 105
           + ++I +  Q+H  ++++GL   P  A+ L       + S L + +R  F+  PQ +  T
Sbjct: 27  RSRSIVKGLQLHGYIVKSGLSLIPLVANNLIN---FYSKSQLPFDSRRAFEDSPQKSATT 83

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           W+++I  ++ +  P  S + FL+ +      P++   P   K+   L +  +G+++H + 
Sbjct: 84  WSSIISCFAQNELPWMS-LEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLS 142

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K+ ++ D+F+ +SL+  YA CG++  A  +F  +  ++VV+W+ M+ G+ Q G  E+A+
Sbjct: 143 MKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEAL 202

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
            L++E                                           L +N+  ++++F
Sbjct: 203 WLFKE------------------------------------------ALFENLAVNDYSF 220

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
            +V+S CA    +++G QI     K     + ++ +SL+ +Y+KCG+L+ A +VF  V  
Sbjct: 221 STVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPM 280

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           R++ +W+ M+   A +   ++ ++LF RM+ + +KPN +TF NVL ACSH+GLVDEG+ +
Sbjct: 281 RNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYY 340

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ M+    + P  KHY  +VDMLGRAG L+EA+E +  MPI P  SVWGALL +C IH+
Sbjct: 341 FDLMKESR-IEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHK 399

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
           N ELA +A   + EL P + G  + LSN YA  G++++ ++ RK +R  G KKE G S +
Sbjct: 400 NTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWV 459

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
           E   ++H F AGE  H   KEIY KL E+   ++  GYV + S++L+ V + D + Q + 
Sbjct: 460 EERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREV-DGDEKNQTIR 518

Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
            HSERLAIA+GLI+    +PIR++KNLRVCGDCH   K +S    R I++RD  RFH F 
Sbjct: 519 YHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFE 578

Query: 646 GGNCSCMDYW 655
            G CSC DYW
Sbjct: 579 DGKCSCNDYW 588



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 141/276 (51%), Gaps = 19/276 (6%)

Query: 39  HPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           H + S  K C  + +    K +H   ++TG   D +  S L   +  C       + YAR
Sbjct: 117 HVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCG-----EIVYAR 171

Query: 93  EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
           +MFD++P  N+ TW+ ++  Y+   E  ++  +F + ++ +    N+++F  VI   A  
Sbjct: 172 KMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAV-NDYSFSTVISVCANS 230

Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
               +G+ I G+ IKSSF+   F+ +SL+  Y+ CGDL  AY VF  +  +++  WN+M+
Sbjct: 231 TLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAML 290

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
               Q    +K IEL++ M++  +KP+ +T + VL+AC+    ++ G++       + +L
Sbjct: 291 KACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKY-------YFDL 343

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
                + P +  + S++    + G ++  ++I   M
Sbjct: 344 MKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNM 379



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 46/322 (14%)

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           ++AR      G  +HG ++KS       ++N+LI+FY+       +   F    +K   +
Sbjct: 24  SSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATT 83

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W+S+IS F Q      ++E  R+M   +++PD+  + +   +C                 
Sbjct: 84  WSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCG---------------- 127

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                               +LS C      DIG  +H    K G   + ++ +SL+DMY
Sbjct: 128 --------------------ILSRC------DIGKSVHCLSMKTGYDADVFVGSSLVDMY 161

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG +  A ++F  +  R+V  WS M+ G+A  G   EAL LF       +  N  +F+
Sbjct: 162 AKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFS 221

Query: 388 NVLCACSHSGLVDEGRMFFNQ-MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            V+  C++S L++ GR      ++  +     V   + +V +  + G L+ A +  +++P
Sbjct: 222 TVISVCANSTLLELGRQIQGLCIKSSFDSSSFVG--SSLVSLYSKCGDLEGAYQVFDEVP 279

Query: 447 IVPGASVWGALLGACKIHENVE 468
           +     +W A+L AC  H + +
Sbjct: 280 M-RNLGIWNAMLKACAQHSHTQ 300


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/556 (39%), Positives = 311/556 (55%), Gaps = 50/556 (8%)

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P+ +  N+++R  S S       + FL+ +       N F+   ++K    L   R    
Sbjct: 378 PSTFCCNSILRCLSES-----DALSFLRRMRTLGRRGNAFSLAILLKPCRTLSHAR---Q 429

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  V+      D  ++ SL+  YAICG    A  VF  +  KD V+WN +I+ + +   
Sbjct: 430 LHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKR 489

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            +  + L+ EM                            R  +E             V P
Sbjct: 490 TKDTLWLFDEMR---------------------------RGESE-------------VKP 509

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           DE T + +L AC  LGA+D G QI     + G      +  S+I MYT+CG ++KA +VF
Sbjct: 510 DEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVF 569

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
                + V  WS MI G A  G G +A+  F  M  + V P+  TFT VL ACSHSGLVD
Sbjct: 570 CHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVD 629

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK-MPIVPGASVWGALLG 459
           EG  FF+ M   Y ++P V+HY C+VD++GRAGLLDEA E + K M + P A++W  LLG
Sbjct: 630 EGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLG 689

Query: 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519
           AC+IH +V+L E   SHL+EL+ +  G  VLL N YA  G W+ V+E+RK MR + ++  
Sbjct: 690 ACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTT 749

Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           PGC+++E+NGE+H+F+A ++SHP   EIY KLDEI   L+  GYVP+ S  L  ++ E  
Sbjct: 750 PGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEG- 808

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +E AL  HSE+LAIA+ L+ +   +PIR+ KNLRVC DCH   K+ S +YNR +++RDR 
Sbjct: 809 KECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRT 868

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF GG CSC DYW
Sbjct: 869 RFHHFNGGQCSCNDYW 884



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 150/337 (44%), Gaps = 39/337 (11%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQ 100
           L+K C+ +   +Q+H  ++  G   D   A+ L   +  C +G     + AR++FD++  
Sbjct: 417 LLKPCRTLSHARQLHANVVIEGHLRDSLLATSLMRSYAICGVG-----DCARKVFDEMVM 471

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            +   WN LI  Y+ +     +  +F ++    S   P+E T   +++A   L     G+
Sbjct: 472 KDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGE 531

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            I    ++  +  +L + NS+I  Y  CG +  AY VF    +K VV+W++MI G    G
Sbjct: 532 QIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANG 591

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKK------------RDLEFGRWPN---- 263
           F E AI  + EM    V PD  T   VLSAC+                 E+   PN    
Sbjct: 592 FGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHY 651

Query: 264 ----------EALSIFHELQLSK-NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM-KKQ 311
                       L   +EL + +  V PD   + ++L AC   G +D+G ++ + + + +
Sbjct: 652 GCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELK 711

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
             +   Y+   L++ Y   G+ +K  EV   ++  ++
Sbjct: 712 AQQAGDYVL--LLNTYAAAGDWEKVAEVRKLMRENEI 746


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/629 (35%), Positives = 344/629 (54%), Gaps = 64/629 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  A+++FD +P+ ++  WN++I  Y       +S  +FL+++      P+  T   ++K
Sbjct: 196 LADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMI-GGGLRPSPVTMANLLK 254

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A  +    +VG   H  V+     +D+F+  SL+  Y+  GD   A  VF  +  + ++S
Sbjct: 255 ACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLIS 314

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE---------- 257
           WN+MISG+VQ G   ++  L+R +       D  T+V+++  C++  DLE          
Sbjct: 315 WNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCII 374

Query: 258 ------------------------------FGR--------------------WPNEALS 267
                                         FGR                    +  +AL 
Sbjct: 375 RKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALK 434

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F ++Q  K V  +  T VS++  CA LG++  G  +HA   + G   +  +T++LIDMY
Sbjct: 435 LFCQMQEEK-VAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMY 493

Query: 328 TKCGNLDKALEVFHT-VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
            KCG +  A ++F+     +DV + ++MI G+ M+G GR AL ++SRM E ++KPN  TF
Sbjct: 494 AKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTF 553

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            ++L ACSHSGLV+EG+  F+ ME  + V P  KHY C+VD+  RAG L+EA E +++MP
Sbjct: 554 VSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMP 613

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
             P   V  ALL  C+ H+N  +       L+ L+  N G  V+LSNIYA+  KW++V+ 
Sbjct: 614 FQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNY 673

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R  MR+ G+KK PG S IEV  +++ F A + SHP   +IY  L+ +   +++ GY+P+
Sbjct: 674 IRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPD 733

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +L+ V E  ++ + L  HSERLAIA+GL+S      I+I KNLRVC DCH V K IS
Sbjct: 734 TSCVLRDVNEP-MKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYIS 792

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           K+  REI++RD  RFHHF  G CSC D+W
Sbjct: 793 KIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 200/442 (45%), Gaps = 56/442 (12%)

Query: 23  PNPTTLTVNNG--HQHHPHPVFSLIKQCKN-IKQLKQIHTQMLRTGLFFDPYSASKLFTP 79
           P+ T ++V++       P    SL+ Q  N +  +K IH Q+++  +  + + A+KL   
Sbjct: 29  PSSTFVSVHHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIR- 87

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
                   L +AR +FDQ   P     N +I  +  + + ++   +F +++ +     N 
Sbjct: 88  -VYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLF-RMMGSCDIEINS 145

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
           +T  F +KA   L+   VG  I    ++  F   L++ +S+++F    G LA A  VF  
Sbjct: 146 YTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDG 205

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
           + +KDVV WNS+I G+VQ G F ++I+++ EM    ++P  VTM  +L A          
Sbjct: 206 MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKA---------- 255

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
                                           C Q G   +G+  H+ +   G+  + ++
Sbjct: 256 --------------------------------CGQSGLKKVGMCAHSYVLALGMGNDVFV 283

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
            TSL+DMY+  G+   A  VF ++ SR +  W+ MI+G+   G   E+  LF R+ ++  
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFN---QMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
             ++ T  +++  CS +  ++ GR+  +   + E    +V      T +VDM  + G + 
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLS----TAIVDMYSKCGAIK 399

Query: 437 EAVEFIEKMPIVPGASVWGALL 458
           +A     +M        W A+L
Sbjct: 400 QATIVFGRMG-KKNVITWTAML 420


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 332/624 (53%), Gaps = 56/624 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMF 95
           S +  C  ++ L   +++H  +++     D   A+  F   AL     T   +  AR++F
Sbjct: 278 SALPACSRLELLDVGREMHAYVIK-----DDELAANSFVASALVDMYATHEQVGKARQVF 332

Query: 96  DQIPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           D +P     L  WN +I  Y+ +    ++  +F ++   + + P E T   V+ A AR  
Sbjct: 333 DMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 392

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   +A+HG V+K     + F+ N+L+  YA  G   +A  +F M+   DVVSWN++I+
Sbjct: 393 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 452

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G V  G    A +L REM+                       LE G              
Sbjct: 453 GCVVQGHVADAFQLAREMQ----------------------QLEEG-------------- 476

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V P+  T +++L  CA L A   G +IH    +  +  +  + ++L+DMY KCG L
Sbjct: 477 ---GVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCL 533

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCA 392
             +  VF  +  R+   W+ +I  + M+G G EA  LF RM    + +PN VTF   L A
Sbjct: 534 ALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 593

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-A 451
           CSHSG+VD G   F+ ME  +GV P      C+VD+LGRAG LDEA   +  M       
Sbjct: 594 CSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQV 653

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           S W  +LGAC++H NV L E A   LLELEPE     VLL NIY+  G+W   +E+R  M
Sbjct: 654 SAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRM 713

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           R  G+ KEPGCS IEV+G IH+F+AGES+HP  +E+++ ++ +   + + GY P+ S +L
Sbjct: 714 RRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVL 773

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +++ D +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK +SK+  R
Sbjct: 774 HDMDDGD-KAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGR 832

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHFR G CSC DYW
Sbjct: 833 EIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 198/482 (41%), Gaps = 79/482 (16%)

Query: 26  TTLTVNNGHQHHPH----PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           +++T+ +  Q   H    P        ++ +  + IH   LR GL   P  A       A
Sbjct: 46  SSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTA 105

Query: 82  LGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
                 L  A E+F  I     +  ++N+LI A           +  L+ +    +    
Sbjct: 106 YARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALRAMLAGGHPLTS 164

Query: 140 FTFPFVIKAAARL----VQFRVGQAIHGMVIKSSF--EDDLFISNSLIHFYAICGDLAMA 193
           FT   V++A + L       R+G+  H   +K+        F  N+L+  YA  G +A A
Sbjct: 165 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 224

Query: 194 YCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             +F     G+ DVV+WN+M+S  VQ G F++A++   +M    V+PD VT  + L AC+
Sbjct: 225 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 284

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-MKK 310
           +   LE                                        +D+G ++HA  +K 
Sbjct: 285 R---LEL---------------------------------------LDVGREMHAYVIKD 302

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREAL 368
             +  N ++ ++L+DMY     + KA +VF  V    + + +W+ MI G+A  G   EAL
Sbjct: 303 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 362

Query: 369 DLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH------ 421
            LF+RM+ EA   P   T  +VL AC+ S         F   E V+G V  VK       
Sbjct: 363 RLFARMEAEAGFVPCETTMASVLPACARS-------EAFAGKEAVHGYV--VKRGMAGNR 413

Query: 422 --YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
                ++DM  R G  D A   I  M  +P    W  L+  C +  +V  A      + +
Sbjct: 414 FVQNALMDMYARLGKTDVA-RRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQ 472

Query: 480 LE 481
           LE
Sbjct: 473 LE 474


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 329/608 (54%), Gaps = 58/608 (9%)

Query: 55  KQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQ+H   ++ G   D +   SA  +++   L      E AR+MFD++P+ N+ TWN  + 
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGL-----TEEARKMFDEMPERNIATWNAYLS 182

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
                     +   F++  +   + PN  TF   + A A     R+G+ +HG V++S FE
Sbjct: 183 NSVLEGRYDDALTAFIEFRHEG-WEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFE 241

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            D+ ++N LI FY  C  +  +  +F  I K + VSW SMI  +VQ    EKA  ++   
Sbjct: 242 ADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRA 301

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
             E ++P                                           +F   SVLSA
Sbjct: 302 RKEGIEPT------------------------------------------DFMVSSVLSA 319

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CA L  +++G  +H    K  +  N ++ ++L+DMY KCG+++ A   F  +  R++  W
Sbjct: 320 CAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTW 379

Query: 352 STMIAGFAMYGCGREALDLFSRMQ--EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
           + MI G+A  G    A+ LF  M     +V PN VTF  VL ACS +G V+ G   F  M
Sbjct: 380 NAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESM 439

Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469
              YG+ PG +HY C+VD+LGRAG++++A +FI+KMPI P  SVWGALLGA K+    EL
Sbjct: 440 RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSEL 499

Query: 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNG 529
            + A  +L EL+P + G  VLLSN++A  G+W+  + +RK M+  G+KK  GCS I    
Sbjct: 500 GKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGN 559

Query: 530 EIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL--H 587
            +H F A ++SH    EI + L ++   +++ GY+P+ S  L  +EEE   E+A+ +  H
Sbjct: 560 AVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE---EKAMEVWYH 616

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           SE++A+A+GLIS+    PIRI KNLR+CGDCH+  K IS +  REI++RD   FH FR  
Sbjct: 617 SEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDN 676

Query: 648 NCSCMDYW 655
            CSC DYW
Sbjct: 677 QCSCRDYW 684



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 151/366 (41%), Gaps = 64/366 (17%)

Query: 156 RVGQAIHGMVIKSSFEDDL--FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
           R+G+A H  +IK+  ++ L  FI N L++ Y+       A  +  +   + VV+W ++I+
Sbjct: 23  RLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIA 81

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR------------- 260
           G VQ G F  A+  +  M  ++++P++ T      A    R    G+             
Sbjct: 82  GSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 261 ----------------WPNEALSIFHEL----------QLSKNV---------------- 278
                              EA  +F E+           LS +V                
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 279 ----NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
                P+  TF + L+ACA    + +G Q+H  + + G + +  +   LID Y KC  + 
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            +  +F  +   +   W +MI  +       +A  +F R ++  ++P     ++VL AC+
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
              +++ G+   + +     VV  +   + +VDM G+ G +++A    ++MP       W
Sbjct: 322 GLSVLEVGKS-VHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTW 379

Query: 455 GALLGA 460
            A++G 
Sbjct: 380 NAMIGG 385



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 287 SVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           +V + C++LG        HA++ K     L  ++   L++MY+K    + A  +     +
Sbjct: 16  AVSTQCSRLGR-----AAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE---G 402
           R V  W+ +IAG    G    AL  FS M+   ++PN  TF    CA   SG +     G
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFP---CAFKASGSLRSPLVG 127

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +   + +    G +  V       DM  +AGL +EA +  ++MP
Sbjct: 128 KQ-VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMP 170


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 332/624 (53%), Gaps = 56/624 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMF 95
           S +  C  ++ L   +++H  +++     D   A+  F   AL     T   +  AR++F
Sbjct: 276 SALPACSRLELLDVGREMHAYVIK-----DDELAANSFVASALVDMYATHEQVGKARQVF 330

Query: 96  DQIPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           D +P     L  WN +I  Y+ +    ++  +F ++   + + P E T   V+ A AR  
Sbjct: 331 DMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   +A+HG V+K     + F+ N+L+  YA  G   +A  +F M+   DVVSWN++I+
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G V  G    A +L REM+                       LE G              
Sbjct: 451 GCVVQGHVADAFQLAREMQ----------------------QLEEG-------------- 474

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V P+  T +++L  CA L A   G +IH    +  +  +  + ++L+DMY KCG L
Sbjct: 475 ---GVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCL 531

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCA 392
             +  VF  +  R+   W+ +I  + M+G G EA  LF RM    + +PN VTF   L A
Sbjct: 532 ALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 591

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-A 451
           CSHSG+VD G   F+ ME  +GV P      C+VD+LGRAG LDEA   +  M       
Sbjct: 592 CSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQV 651

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           S W  +LGAC++H NV L E A   LLELEPE     VLL NIY+  G+W   +E+R  M
Sbjct: 652 SAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRM 711

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           R  G+ KEPGCS IEV+G IH+F+AGES+HP  +E+++ ++ +   + + GY P+ S +L
Sbjct: 712 RRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVL 771

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +++ D +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK +SK+  R
Sbjct: 772 HDMDDGD-KAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGR 830

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHFR G CSC DYW
Sbjct: 831 EIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 198/482 (41%), Gaps = 79/482 (16%)

Query: 26  TTLTVNNGHQHHPH----PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           +++T+ +  Q   H    P        ++ +  + IH   LR GL   P  A       A
Sbjct: 44  SSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTA 103

Query: 82  LGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
                 L  A E+F  I     +  ++N+LI A           +  L+ +    +    
Sbjct: 104 YARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALRAMLAGGHPLTS 162

Query: 140 FTFPFVIKAAARL----VQFRVGQAIHGMVIKSSF--EDDLFISNSLIHFYAICGDLAMA 193
           FT   V++A + L       R+G+  H   +K+        F  N+L+  YA  G +A A
Sbjct: 163 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 222

Query: 194 YCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             +F     G+ DVV+WN+M+S  VQ G F++A++   +M    V+PD VT  + L AC+
Sbjct: 223 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 282

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-MKK 310
           +   LE                                        +D+G ++HA  +K 
Sbjct: 283 R---LEL---------------------------------------LDVGREMHAYVIKD 300

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREAL 368
             +  N ++ ++L+DMY     + KA +VF  V    + + +W+ MI G+A  G   EAL
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 369 DLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH------ 421
            LF+RM+ EA   P   T  +VL AC+ S         F   E V+G V  VK       
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARS-------EAFAGKEAVHGYV--VKRGMAGNR 411

Query: 422 --YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
                ++DM  R G  D A   I  M  +P    W  L+  C +  +V  A      + +
Sbjct: 412 FVQNALMDMYARLGKTDVA-RRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQ 470

Query: 480 LE 481
           LE
Sbjct: 471 LE 472


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/621 (36%), Positives = 346/621 (55%), Gaps = 64/621 (10%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FD +P  N+ +W +++R Y  + +  ++  +F  +       P++    + + 
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM-------PHKNVVSWTVM 154

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
               L + RV  A    +     E D+    ++I  Y   G L  A  +F  + K++VV+
Sbjct: 155 LGGLLQEGRVDDARK--LFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT 212

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMEN----------------------------VKP- 238
           W +M+SG+ + G  + A +L+  M   N                            VKP 
Sbjct: 213 WTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV 272

Query: 239 ---DEVTMVAVLSACAKK--------RDLEFGRWPN------------EALSIFHELQLS 275
              +E+ M   L+    K        ++ + G W              EAL +F  +Q  
Sbjct: 273 VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ-R 331

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + +  +  + +SVLS C  L ++D G Q+HA++ +     + Y+ + LI MY KCGNL +
Sbjct: 332 EGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVR 391

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A +VF+    +DV +W++MI G++ +G G EAL++F  M  + V P+ VTF  VL ACS+
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SG V EG   F  M+  Y V PG++HY C+VD+LGRA  ++EA++ +EKMP+ P A VWG
Sbjct: 452 SGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWG 511

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
           ALLGAC+ H  ++LAE A   L +LEP+N G  VLLSN+YA  G+W +V  LR+ ++   
Sbjct: 512 ALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARS 571

Query: 516 LKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           + K PGCS IEV  ++H F  G+S  HP    I   L+++   L+  GY P+ S +L  V
Sbjct: 572 VTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDV 631

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           +EE+ +  +L  HSE+LA+AYGL+ V    PIR++KNLRVCGDCH+  KLI+K+  REI+
Sbjct: 632 DEEE-KTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREII 690

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHF+ G+CSC DYW
Sbjct: 691 LRDANRFHHFKDGHCSCKDYW 711



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 204/491 (41%), Gaps = 97/491 (19%)

Query: 86  SSLEYAREMFDQIPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143
             L++AR++FD+ P P+  + +WN ++ AY  + +P ++ ++F ++       P   T  
Sbjct: 36  GQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM-------PQRNTVS 88

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           +    +  +    + +A    V  +  + ++    S++  Y   GD+A A  +F  +  K
Sbjct: 89  WNGLISGHIKNGMLSEARR--VFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHK 146

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           +VVSW  M+ G +Q G  + A +L+  M  ++V       VAV +        E GR  +
Sbjct: 147 NVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDV-------VAVTNMIGGY--CEEGRL-D 196

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYL--- 319
           EA ++F E+   +NV     T+ +++S  A+ G +D+  ++   M ++  +     L   
Sbjct: 197 EARALFDEMP-KRNV----VTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGY 251

Query: 320 --------TTSLIDM---------------YTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356
                    +SL D                +   G +DKA  VF  +K RD   WS MI 
Sbjct: 252 THSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIK 311

Query: 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM------- 409
            +   G   EAL LF RMQ   +  N  +  +VL  C     +D G+    Q+       
Sbjct: 312 VYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQ 371

Query: 410 ---------------------EPVYGVVP--GVKHYTCMVDMLGRAGLLDEAVEFIEKM- 445
                                + V+   P   V  +  M+    + GL +EA+     M 
Sbjct: 372 DLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMC 431

Query: 446 --PIVPGASVWGALLGAC----KIHENVELAE-YACSHLLELEPENHGALVLLSNIYAKT 498
              + P    +  +L AC    K+ E +EL E   C + +E   E++  LV L       
Sbjct: 432 SSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDL------L 485

Query: 499 GKWDNVSELRK 509
           G+ D V+E  K
Sbjct: 486 GRADQVNEAMK 496



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 313 IKLNCYLTTSL-IDMYTKCGNLDKALEVFHT--VKSRDVFVWSTMIAGFAMYGCGREALD 369
           ++L C  ++S  I  Y + G LD A +VF    +  R V  W+ M+A +      REAL 
Sbjct: 17  VRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALL 76

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF +M +     N V++  ++     +G++ E R  F+ M P   VV     +T MV   
Sbjct: 77  LFEKMPQR----NTVSWNGLISGHIKNGMLSEARRVFDTM-PDRNVVS----WTSMVRGY 127

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489
            R G + EA      MP     S W  +LG       V+ A      L ++ PE    +V
Sbjct: 128 VRNGDVAEAERLFWHMPHKNVVS-WTVMLGGLLQEGRVDDAR----KLFDMMPEKD--VV 180

Query: 490 LLSNI---YAKTGKWDNVSELRKHM 511
            ++N+   Y + G+ D    L   M
Sbjct: 181 AVTNMIGGYCEEGRLDEARALFDEM 205



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 43/243 (17%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           + S++  C ++  L   KQ+H Q++R+    D Y AS L T        +L  A+++F++
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYV--KCGNLVRAKQVFNR 398

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
            P  ++  WN++I  YS      ++  +F  +  +S   P++ TF  V+ A +       
Sbjct: 399 FPLKDVVMWNSMITGYSQHGLGEEALNVFHDMC-SSGVPPDDVTFIGVLSACS-----YS 452

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+   G+ +  + +    +   + H+           C+  ++G+ D V+          
Sbjct: 453 GKVKEGLELFETMKCKYQVEPGIEHY----------ACLVDLLGRADQVN---------- 492

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                +A++L  +M ME   PD +   A+L AC     L+      E L+        KN
Sbjct: 493 -----EAMKLVEKMPME---PDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE----PKN 540

Query: 278 VNP 280
             P
Sbjct: 541 AGP 543


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 331/567 (58%), Gaps = 48/567 (8%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++FD +P+ +  +W T+I   + +    ++   F ++     +  ++FTF  V+ A  
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG-FCMDQFTFGSVLTACG 281

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
             +    G+ IH  +I++ ++D++F+ ++L+  Y  C ++  A  VF  +  K+V+SW +
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTA 341

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M+ G+ Q G+ E+A+ ++                     C  +R+               
Sbjct: 342 MLVGYGQNGYSEEAVRIF---------------------CDMQRN--------------- 365

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS--LIDMYT 328
                  ++PD+FT  SV+S+CA L +++ G Q H +    G  L C++T S  LI +Y 
Sbjct: 366 ------EIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG--LICFVTVSNALITLYG 417

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
           KCG+L+ A ++FH +K RD   W+ +++G+A +G   E + LF  M    + P+ VTF  
Sbjct: 418 KCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVG 477

Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
           VL ACS +GLV++G  +F  M   + + P   HYTCM+D+L RAG L+EA  FI +MP  
Sbjct: 478 VLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFS 537

Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
           P A  W  LL +C+++ N+E+ ++A   L +LEP+N  + +LLS+IYA  GKWD+V++LR
Sbjct: 538 PDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLR 597

Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
           K MR  G+KKEPG S I+   ++H F A + S P   +IY+KL+ +  ++   GYVP+ S
Sbjct: 598 KGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMS 657

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            +L  VE+ + + + LN HSE+LAIA+GL+ +     IR+VKNLRVCGDCH   K IS++
Sbjct: 658 FVLHDVEKSE-KIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRI 716

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             REIL+RD  RFH F+ G CSC D+W
Sbjct: 717 TQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 225/465 (48%), Gaps = 50/465 (10%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           + +N  Q+K++H +++RT    + +  + L      G    L+ AR +FD IPQPNL++W
Sbjct: 17  EARNRAQVKKLHCRIIRTLTNPETFLYNNLIN--TYGKLGDLKNARNVFDHIPQPNLFSW 74

Query: 107 NTLIRAYS-------------------------------SSAEPIQSFMIFLQLVYNSPY 135
           NTL+ AYS                                +    +S  ++  ++ +   
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             N  TF  ++  ++      +G+ IHG + K  ++  LF+ + L+  YA  G +  A  
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           +F  I +K++V +N+MI+G ++  F  +A +L+  M     + D ++   +++   +   
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMP----EKDSISWTTIITGLTQNGL 250

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
            +      EA+  F E+ + +    D+FTF SVL+AC    A+D G QIHA + +   + 
Sbjct: 251 FK------EAVDKFKEMGI-EGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD 303

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N ++ ++L+DMY KC N+  A  VF  ++ ++V  W+ M+ G+   G   EA+ +F  MQ
Sbjct: 304 NIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQ 363

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
             ++ P+  T  +V+ +C++   ++EG  F  Q     G++  V     ++ + G+ G L
Sbjct: 364 RNEIHPDDFTLGSVISSCANLASLEEGAQFHGQ-ALASGLICFVTVSNALITLYGKCGSL 422

Query: 436 DEAVEFIEKMPIVPGASVWGALLGA----CKIHENVELAEYACSH 476
           + A +   +M I    S W AL+       K +E + L E   +H
Sbjct: 423 EHAHQLFHEMKIRDEVS-WTALVSGYAQFGKANETISLFETMLAH 466



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 35/276 (12%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           KQIH  ++RT    + +  S L   +  C      +++YA  +F ++   N+ +W  ++ 
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKC-----RNVKYAEAVFRKMRHKNVISWTAMLV 344

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            Y  +    ++  IF  +  N  + P++FT   VI + A L     G   HG  + S   
Sbjct: 345 GYGQNGYSEEAVRIFCDMQRNEIH-PDDFTLGSVISSCANLASLEEGAQFHGQALASGLI 403

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
             + +SN+LI  Y  CG L  A+ +F  +  +D VSW +++SG+ Q G   + I L+  M
Sbjct: 404 CFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETM 463

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH--------------------E 271
               + PD VT V VLSAC++   +E G    E +   H                     
Sbjct: 464 LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGR 523

Query: 272 LQLSKN------VNPDEFTFVSVLSACAQLGAMDIG 301
           L+ +KN       +PD   + ++LS+C   G ++IG
Sbjct: 524 LEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIG 559


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/604 (36%), Positives = 333/604 (55%), Gaps = 51/604 (8%)

Query: 55  KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           +Q+H+ + + G   + +  + L   +  CA      +  A  +FDQ+P+ NL +WN++I 
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCA-----DMHSAVRVFDQMPERNLVSWNSMIV 319

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            +  +    ++  +F  ++      PNE +   V+ A A +     G+ +HG+V+K    
Sbjct: 320 GFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLV 379

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
              ++ NSL+  Y  C        +F  +G +DVV+WN ++ GFVQ   FE+A   +  M
Sbjct: 380 PLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVM 439

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
             E + P                                          DE +F +VL +
Sbjct: 440 RREGILP------------------------------------------DEASFSTVLHS 457

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
            A L A+  G  IH ++ K G   N  +  SLI MY KCG+L  A +VF  ++  +V  W
Sbjct: 458 SASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISW 517

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           + MI+ + ++GC  + ++LF  M    ++P+ VTF  VL ACSH+G V+EG   FN M+ 
Sbjct: 518 TAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 577

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
           ++ + PG +HY CMVD+LGRAG LDEA  FIE MP+ P  SVWGALLGAC+ + N+++  
Sbjct: 578 IHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGR 637

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A   L E+EP N G  VLL+N+  ++G+ +  +E+R+ M V+G++KEPGCS I+V    
Sbjct: 638 EAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMT 697

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
             F A + SH    EIY  L+++   +K  GYV     +   +EE + +EQ L  HSE+L
Sbjct: 698 FVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENE-EEQGLWYHSEKL 756

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+A+GL+++    PIRI KNLR CG CHTV KL SK+++REI++RD  RFH F  G CSC
Sbjct: 757 ALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSC 816

Query: 652 MDYW 655
            DYW
Sbjct: 817 GDYW 820



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 63/464 (13%)

Query: 47  QCKNIKQLKQIHTQML---RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--P 101
           Q +++K   QIHTQ++    T L F   +   L+  C       L  A  +F        
Sbjct: 154 QTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCG-----CLNQALLLFSITHHHFK 208

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
            + TW +LI   S     +Q+  +F Q+  + PY PN+FTF  ++ A+A  +    GQ +
Sbjct: 209 TIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPY-PNQFTFSSILSASAATMMVLHGQQL 267

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF 221
           H ++ K  F+ ++F+  +L+  YA C D+  A  VF  + ++++VSWNSMI GF     +
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 222 EKAIELYREMEME-NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
           ++A+ +++++  E  V P+EV++ +VLSACA    L FGR                    
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGR-------------------- 367

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
                                 Q+H  + K G+    Y+  SL+DMY KC   D+ +++F
Sbjct: 368 ----------------------QVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 405

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             V  RDV  W+ ++ GF       EA + F  M+   + P+  +F+ VL + +    + 
Sbjct: 406 QCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALH 465

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           +G    +Q+  + G V  +     ++ M  + G L +A +  E +      S W A++ A
Sbjct: 466 QGTAIHDQIIKL-GYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVIS-WTAMISA 523

Query: 461 CKIH----ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
            ++H    + +EL E+  S    +EP +H   V + +  + TG+
Sbjct: 524 YQLHGCANQVIELFEHMLSE--GIEP-SHVTFVCVLSACSHTGR 564



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 46/302 (15%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-- 202
           ++  A +    +    IH  +I +++    F+ N+LI+ YA CG L  A  +F +     
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           K +V+W S+I+         +A+ L+ +M      P++ T  ++LSA A           
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAA---------- 257

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
              + + H                              G Q+H+ + K G   N ++ T+
Sbjct: 258 --TMMVLH------------------------------GQQLHSLIHKHGFDANIFVGTA 285

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR-MQEAKVKP 381
           L+DMY KC ++  A+ VF  +  R++  W++MI GF        A+ +F   ++E  V P
Sbjct: 286 LVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIP 345

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N V+ ++VL AC++ G ++ GR     +   YG+VP       ++DM  +    DE V+ 
Sbjct: 346 NEVSVSSVLSACANMGGLNFGRQVHGVVVK-YGLVPLTYVMNSLMDMYFKCRFFDEGVKL 404

Query: 442 IE 443
            +
Sbjct: 405 FQ 406


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/617 (36%), Positives = 324/617 (52%), Gaps = 49/617 (7%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S++K C         +QIH  M++    FD + A  L    A   F  L+ AR++FD +P
Sbjct: 311 SVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGF--LDDARKVFDFMP 368

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVG 158
           + +L  WN LI   S      +   +F ++         N  T   V+K+ A        
Sbjct: 369 RRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHT 428

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H +  K     D  + N LI  Y  CG L  A  VF      D++S  +M++   Q 
Sbjct: 429 RQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQC 488

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
              E AI+L+ +M                                          L K +
Sbjct: 489 DHGEDAIKLFVQM------------------------------------------LRKGL 506

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD F   S+L+AC  L A + G Q+HA + K+    + +   +L+  Y KCG+++ A  
Sbjct: 507 EPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADM 566

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
            F  +  R +  WS MI G A +G G+ ALDLF RM +  V PN +T T+VL AC+H+GL
Sbjct: 567 AFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGL 626

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           VD+ + +F  M+  +G+    +HY CM+D+LGRAG L++A+E +  MP    A+VWGALL
Sbjct: 627 VDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALL 686

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GA ++H + EL   A   L  LEPE  G  VLL+N YA  G WD ++++RK M+ S +KK
Sbjct: 687 GASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKK 746

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           EP  S +E+  ++H F+ G+ SHP+ ++IY KL E+   +   GYVPN    L  V+  +
Sbjct: 747 EPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSE 806

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E  L+ HSERLA+A+ LIS     PIR+ KNLR+C DCH   K ISK+ +REI++RD 
Sbjct: 807 -KELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDI 865

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF  G CSC DYW
Sbjct: 866 NRFHHFTNGTCSCGDYW 882



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 195/417 (46%), Gaps = 70/417 (16%)

Query: 56  QIHTQMLRTGLF--FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
            +H+ +L++GL   F  +  + L++ C L +      AR +FD+IP P   +W++L+ AY
Sbjct: 25  HLHSHLLKSGLLAGFSNHLLT-LYSRCRLPS-----AARAVFDEIPDPCHVSWSSLVTAY 78

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S++  P  + + F + +       NEF  P V+K A      R G  +H + + +    D
Sbjct: 79  SNNGMPRDALLAF-RAMRGRGVPCNEFALPVVLKCAP---DVRFGAQVHALAVATRLVHD 134

Query: 174 LFISNSLIHFYAICGDLAMAYCVF----VMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
           +F++N+L+  Y   G +  A  +F     + G+++ VSWN+MIS +V+      AI ++R
Sbjct: 135 VFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFR 194

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
           EM     +P+E     V++AC   RDLE GR                             
Sbjct: 195 EMVWSGERPNEFGFSCVVNACTGSRDLEAGR----------------------------- 225

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
                        Q+H  + + G + + +   +L+DMY+K G+++ A  VF  + + DV 
Sbjct: 226 -------------QVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVV 272

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+  I+G   +G    AL+L  +M+ + + PN  T ++VL AC+ +G  + GR     M
Sbjct: 273 SWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFM 332

Query: 410 EPVYGVVPGVKHY-----TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
                 V  V  +       +VDM  + G LD+A +  + MP      +W AL+  C
Sbjct: 333 ------VKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 218/489 (44%), Gaps = 76/489 (15%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI----P 99
           ++K   +++   Q+H   + T L  D + A+ L      G F  ++ AR MFD+      
Sbjct: 109 VLKCAPDVRFGAQVHALAVATRLVHDVFVANALVA--VYGGFGMVDEARRMFDEYVGVGG 166

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + N  +WNT+I AY  + +   +  +F ++V++    PNEF F  V+ A         G+
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGER-PNEFGFSCVVNACTGSRDLEAGR 225

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG V+++ +E D+F +N+L+  Y+  GD+ MA  VF  +   DVVSWN+ ISG V  G
Sbjct: 226 QVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHG 285

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN----EALSIFHE---- 271
              +A+EL  +M+   + P+  T+ +VL ACA       GR  +    +A++ F E    
Sbjct: 286 HDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAV 345

Query: 272 -----------LQLSKNV-----NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                      L  ++ V       D   + +++S C+  G     + +  +M+K+G+ L
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDL 405

Query: 316 NCYLTT-------------------------------------SLIDMYTKCGNLDKALE 338
           +   TT                                      LID Y KCG LD A++
Sbjct: 406 DVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIK 465

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           VF   +S D+   +TM+   +    G +A+ LF +M    ++P++   +++L AC+    
Sbjct: 466 VFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSA 525

Query: 399 VDEGRMFFNQM---EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            ++G+     +   +    V  G      +V    + G +++A      +P   G   W 
Sbjct: 526 YEQGKQVHAHLIKRQFTSDVFAG----NALVYAYAKCGSIEDADMAFSGLP-ERGIVSWS 580

Query: 456 ALLGACKIH 464
           A++G    H
Sbjct: 581 AMIGGLAQH 589


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/735 (33%), Positives = 374/735 (50%), Gaps = 128/735 (17%)

Query: 45  IKQCKNI---KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
           IKQC  +   + +K IH  ++RT    + +  + +    AL    S  YAR +FD IPQP
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYAL--IRSSIYARRVFDGIPQP 67

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQL--------------------------VYNS-- 133
           NL++WN L+ AYS S    +    F +L                           YN+  
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 134 -PYFPN--EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
             +  N    T   ++K ++      +G+ IHG VIK  FE  L + + L+  Y+  G +
Sbjct: 128 KDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCI 187

Query: 191 AMAYCVF------------VMIG------------------KKDVVSWNSMISGFVQGGF 220
           + A  VF             ++G                  +KD VSW++MI G  Q G 
Sbjct: 188 SDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGM 247

Query: 221 FEKAIELYREMEMENVKPDEVTMVAV---------------LSACAKKRDLE-------- 257
            ++AIE +REM++E +K D+    +V               + AC  + +L+        
Sbjct: 248 EKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSA 307

Query: 258 -----------------FGR--------W------------PNEALSIFHELQLSKNVNP 280
                            F R        W              EA+ IF ++Q S  ++P
Sbjct: 308 LIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRS-GIDP 366

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D +T    +SACA + +++ G Q H K    G+     ++ SL+ +Y KCG++D +  +F
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLF 426

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
           + +  RD   W+ M++ +A +G   EA+ LF +M +  +KP+ VT T V+ ACS +GLV+
Sbjct: 427 NEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVE 486

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           +G+ +F  M   YG+VP   HY+CM+D+  R+G ++EA+ FI  MP  P A  W  LL A
Sbjct: 487 KGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C+   N+E+ ++A   L+EL+P +     LLS+IYA  GKWD V++LR+ M+   ++KEP
Sbjct: 547 CRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEP 606

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
           G S I+  G++H F A + S P   +IY+KL+E+  ++   GY P+ S +   VEE  V+
Sbjct: 607 GQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEA-VK 665

Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
            + LN HSERLAIA+GLI V    PIR+ KNLRVC DCH   K IS +  REIL+RD  R
Sbjct: 666 IKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVR 725

Query: 641 FHHFRGGNCSCMDYW 655
           FH F+ G CSC D+W
Sbjct: 726 FHRFKDGTCSCGDFW 740



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 46/305 (15%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFS 86
           G +   +P  S++  C  +  +   +QIH  ++RT L    Y  S L   +  C      
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKC-----K 316

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            L YA+ +FD++ Q N+ +W  ++  Y  +    ++  IFL +   S   P+ +T    I
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDM-QRSGIDPDHYTLGQAI 375

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            A A +     G   HG  I +     + +SNSL+  Y  CGD+  +  +F  +  +D V
Sbjct: 376 SACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEV 435

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL---------- 256
           SW +M+S + Q G   +AI+L+ +M    +KPD VT+  V+SAC++   +          
Sbjct: 436 SWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELM 495

Query: 257 --EFGRWPN------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296
             E+G  P+                  EA+   + +       PD   + ++LSAC   G
Sbjct: 496 INEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPF----RPDAIGWTTLLSACRNKG 551

Query: 297 AMDIG 301
            ++IG
Sbjct: 552 NLEIG 556


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/645 (37%), Positives = 367/645 (56%), Gaps = 41/645 (6%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SLI+QC   K+I  + +I +  L+ G  F     +KL    A     S+ YAR++FD++P
Sbjct: 83  SLIQQCIGIKSITDITKIQSHALKRG--FHHSLGNKLID--AYLKCGSVVYARKVFDEVP 138

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
             ++  WN++I +Y  +    ++  I+ ++V +    P+EFTF  V KA + L     GQ
Sbjct: 139 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG-ILPDEFTFSSVFKAFSDLGLVHEGQ 197

Query: 160 AIHGM-VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
             HG  V+      ++F+ ++L+  YA  G +  A  V   +  KDVV + ++I G+   
Sbjct: 198 RAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHH 257

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----------------WP 262
           G   ++++++R M  + ++ +E T+ +VL  C    DL  GR                W 
Sbjct: 258 GEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVTWT 317

Query: 263 NE------------ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
           +             AL  F ++ L  ++ P+ FT  SVL AC+ L  ++ G QIHA + K
Sbjct: 318 SVIVGLVQNGREEIALLKFRQM-LRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK 376

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
            G+ ++ Y+  +LID Y KCG+ + A  VF+ +   DV   ++MI  +A  G G EAL L
Sbjct: 377 FGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 436

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           FS M++  ++PN VT+  VL AC+++GL++EG   F+       +     HY CMVD+LG
Sbjct: 437 FSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLG 496

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490
           RAG L EA   I ++ I     +W  LL AC+IH +VE+A+   + +++L PE+ G  VL
Sbjct: 497 RAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVL 555

Query: 491 LSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSK 550
           LSN+YA TG W  V E++  MR   LKK P  S ++V  EIH F+AG+ SHP  ++I  K
Sbjct: 556 LSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREK 615

Query: 551 LDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI-SVEPSQPIRIV 609
           L+E++ ++K  GYVP+   +LQ ++EE  + ++L  HSE+LA+A+ L  S   +  IRI+
Sbjct: 616 LEELIEKVKELGYVPDTRFVLQDLDEEK-KIRSLYYHSEKLAVAFALWRSNYKNTTIRIL 674

Query: 610 KNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDY 654
           KNLRVCGDCHT  K +SK+  R+I+ RD  RFHHFR G CSC DY
Sbjct: 675 KNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 719



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 58/333 (17%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAR 92
           G+ HH     SL           Q+   M + G+  + Y+ S +   C  G    L   R
Sbjct: 253 GYSHHGEDGESL-----------QVFRNMTKKGIEANEYTLSSVLVCC--GNLEDLTSGR 299

Query: 93  EMFDQIPQPNL---YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            +   I +  L    TW ++I     +     + + F Q++  S   PN FT   V++A 
Sbjct: 300 LIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQML-RSSITPNSFTLSSVLRAC 358

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           + L     G+ IH +V+K   + D ++  +LI FY  CG   +A  VF  + + DVVS N
Sbjct: 359 SSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVN 418

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           SMI  + Q GF  +A++L+  M+   ++P+ VT + VLSAC     LE      E   IF
Sbjct: 419 SMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLE------EGCHIF 472

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
              + S N+   +  +     AC                              ++D+  +
Sbjct: 473 SSARNSGNIELTKDHY-----AC------------------------------MVDLLGR 497

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            G L +A  + + V   DV +W T+++   ++G
Sbjct: 498 AGRLKEAEMLINQVNISDVVIWRTLLSACRIHG 530



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 158/373 (42%), Gaps = 59/373 (15%)

Query: 101 PNLYTWNTLIRAYSSSAEP--IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P    W T+  A      P  ++SF    +  + + +  N  +F   ++  + L+Q  +G
Sbjct: 33  PENLNWFTIQHAKPRPIPPSIVKSFTCAAKSFFATAH--NGASFSESLQLYSSLIQQCIG 90

Query: 159 -------QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
                    I    +K  F   L   N LI  Y  CG +  A  VF  +  + +V+WNSM
Sbjct: 91  IKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSM 148

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           I+ +++ G  ++AI++Y+ M  + + PDE                               
Sbjct: 149 IASYIRNGRSKEAIDIYQRMVPDGILPDE------------------------------- 177

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKC 330
                      FTF SV  A + LG +  G + H +    G+ + N ++ ++L+DMY K 
Sbjct: 178 -----------FTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKF 226

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G +  A  V   V  +DV +++ +I G++ +G   E+L +F  M +  ++ N  T ++VL
Sbjct: 227 GKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVL 286

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML--GRAGLLDEAVEFIEKMPIV 448
             C +   +  GR+    +    G+   V   + +V ++  GR  +       + +  I 
Sbjct: 287 VCCGNLEDLTSGRLIHGLIVKA-GLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 345

Query: 449 PGASVWGALLGAC 461
           P +    ++L AC
Sbjct: 346 PNSFTLSSVLRAC 358


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/567 (38%), Positives = 331/567 (58%), Gaps = 46/567 (8%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P+ N+ +W  +IR Y       ++ ++F ++       P      + +    
Sbjct: 44  ARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM-------PERNVVSWTVMLGG 96

Query: 151 RLVQFRVGQA---IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
            +   RV +A      M +K     D+  S ++I      G L  A  +F  + +++VV+
Sbjct: 97  LIEDGRVDEARQLFDMMPVK-----DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVA 151

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W SMISG    G +   I++Y                       +++  E      EAL+
Sbjct: 152 WTSMISGEKDDGTWSTMIKIY-----------------------ERKGFEL-----EALA 183

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F  +Q  + V P   + +SVLS C  L ++D G Q+H+++ +    ++ Y+++ LI MY
Sbjct: 184 LFSLMQ-REGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMY 242

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG+L  A  VF    S+D+ +W+++IAG+A +G G +AL++F  M  + + P+ +TF 
Sbjct: 243 IKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFI 302

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACS++G V EG   F  M+  Y V P  +HY CMVD+LGRAG L+EA+  IE MP+
Sbjct: 303 GVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPV 362

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
              A VWGALLGAC+ H+N++LAE A   LL+LEP N G  +LLSN+Y+   +W +V EL
Sbjct: 363 EADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVEL 422

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPN 566
           RK MR   L+K PGCS IEV+ ++H F  G S SHP  + I  KL ++ A L+  GY P+
Sbjct: 423 RKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPD 482

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S ++  V+EE+ +  +L  HSE+LA+AYGL+ V    PIR++KNLRVCGD H+  KLI+
Sbjct: 483 GSFVMHDVDEEE-KVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIA 541

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMD 653
           ++  REI+LRD  RFHHF+ G CSC D
Sbjct: 542 QVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 32/230 (13%)

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  +F  + + + +SWN ++SG+VQ G   +A +++ +M   NV    V+  A++    +
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYVQ 68

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
           +  +E      EA  +F  +   +NV     ++  +L    + G +D   Q+   M  + 
Sbjct: 69  EGLIE------EAELLFWRMP-ERNV----VSWTVMLGGLIEDGRVDEARQLFDMMPVKD 117

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG-------------FA 359
           +      +T++ID     G L +A E+F  +  R+V  W++MI+G             + 
Sbjct: 118 V----VASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYE 173

Query: 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
             G   EAL LFS MQ   V+P+  +  +VL  C     +D GR   +Q+
Sbjct: 174 RKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQL 223



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           N      L+  Y + G + +A +VF  +  R+V  W+ MI G+   G   EA  LF RM 
Sbjct: 24  NTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMP 83

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
           E     N V++T +L      G VDE R  F+ M PV  VV      T M+D L   G L
Sbjct: 84  ER----NVVSWTVMLGGLIEDGRVDEARQLFDMM-PVKDVVAS----TNMIDGLCSEGRL 134

Query: 436 DEAVEFIEKMP 446
            EA E  ++MP
Sbjct: 135 IEAREIFDEMP 145



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
           +A ++F  +   +   W+ +++G+   G   EA  +F +M E     N V++T ++    
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPER----NVVSWTAMIRGYV 67

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
             GL++E  + F +M P   VV     +T M+  L   G +DEA +  + MP+    +  
Sbjct: 68  QEGLIEEAELLFWRM-PERNVVS----WTVMLGGLIEDGRVDEARQLFDMMPVKDVVAST 122

Query: 455 GALLGACKIHENVELAE 471
             + G C     +E  E
Sbjct: 123 NMIDGLCSEGRLIEARE 139


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 332/624 (53%), Gaps = 56/624 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMF 95
           S +  C  ++ L   +++H  +++     D   A+  F   AL     T   +  AR++F
Sbjct: 276 SALPACSRLELLDVGREMHAYVIK-----DDELAANSFVASALVDMYATHEQVGKARQVF 330

Query: 96  DQIPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           D +P     L  WN +I  Y+ +    ++  +F ++   + + P E T   V+ A AR  
Sbjct: 331 DMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 390

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   +A+HG V+K     + F+ N+L+  YA  G   +A  +F M+   DVVSWN++I+
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 450

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G V  G    A +L REM+                       LE G              
Sbjct: 451 GCVVQGHVADAFQLAREMQ----------------------QLEEG-------------- 474

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V P+  T +++L  CA L A   G +IH    +  +  +  + ++L+DMY KCG L
Sbjct: 475 ---GVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCL 531

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCA 392
             +  VF  +  R+   W+ +I  + M+G G EA  LF RM    + +PN VTF   L A
Sbjct: 532 ALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 591

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-A 451
           CSHSG+VD G   F+ ME  +GV P      C+VD+LGRAG LDEA   +  M       
Sbjct: 592 CSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQV 651

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           S W  +LGAC++H NV L E A   LLELEPE     VLL NIY+  G+W   +E+R  M
Sbjct: 652 SAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRM 711

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           R  G+ KEPGCS IEV+G IH+F+AGES+HP  +E+++ ++ +   + + GY P+ S +L
Sbjct: 712 RRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVL 771

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +++ D +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK +SK+  R
Sbjct: 772 HDMDDGD-KAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGR 830

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHFR G CSC DYW
Sbjct: 831 EIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 198/482 (41%), Gaps = 79/482 (16%)

Query: 26  TTLTVNNGHQHHPH----PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCA 81
           +++T+ +  Q   H    P        ++ +  + IH   LR GL   P  A       A
Sbjct: 44  SSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTA 103

Query: 82  LGTFSSLEYAREMFDQIPQP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
                 L  A E+F  I     +  ++N+LI A           +  L+ +    +    
Sbjct: 104 YARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALRAMLAGGHPLTS 162

Query: 140 FTFPFVIKAAARL----VQFRVGQAIHGMVIKSSF--EDDLFISNSLIHFYAICGDLAMA 193
           FT   V++A + L       R+G+  H   +K+        F  N+L+  YA  G +A A
Sbjct: 163 FTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADA 222

Query: 194 YCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
             +F     G+ DVV+WN+M+S  VQ G F++A++   +M    V+PD VT  + L AC+
Sbjct: 223 QRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACS 282

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-MKK 310
           +   LE                                        +D+G ++HA  +K 
Sbjct: 283 R---LEL---------------------------------------LDVGREMHAYVIKD 300

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREAL 368
             +  N ++ ++L+DMY     + KA +VF  V    + + +W+ MI G+A  G   EAL
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 369 DLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH------ 421
            LF+RM+ EA   P   T  +VL AC+ S         F   E V+G V  VK       
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARS-------EAFAGKEAVHGYV--VKRGMAGNR 411

Query: 422 --YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
                ++DM  R G  D A   I  M  +P    W  L+  C +  +V  A      + +
Sbjct: 412 FVQNALMDMYARLGKTDVA-RRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQ 470

Query: 480 LE 481
           LE
Sbjct: 471 LE 472


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/636 (37%), Positives = 352/636 (55%), Gaps = 46/636 (7%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           SL++QC     L+   Q+H   + TGL   P    +       G+ S   +AR++FD+IP
Sbjct: 25  SLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDEIP 84

Query: 100 QP--NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF-------VIKAAA 150
           Q   +   +  LIR       P +S  +F+Q+         +F  P         + A A
Sbjct: 85  QSHKDSVDYTALIR----HCPPFESLKLFIQM--------RQFDLPLDGVVMVCALNACA 132

Query: 151 RLV--QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
           RL     +VG  +H  V+K  F     + N+L++ Y   G +  A  +F  I  + VVSW
Sbjct: 133 RLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSW 192

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           +  + G V+    E    L+ EM   N     V +V  +             +  EA  +
Sbjct: 193 SCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVG----------NGFTKEAFLL 242

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA-KMKKQGIKLNCYLTTSLIDMY 327
             E+           T  SVLSAC+Q G + +G  +H   +K+ G+     + TSL+DMY
Sbjct: 243 LKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMY 302

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG ++ AL VF ++  R+V  W+ M+ G AM+G G+ A+D+F  M E +VKP+ VTF 
Sbjct: 303 AKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFM 361

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSHSGLV++G  +F+ +EPVY + P ++HY CMV +LGRAG L+EA   ++ M I
Sbjct: 362 ALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRI 421

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   V G+L+G+C  H  ++L E     LLE++P N    ++LSN+YA +GK +  + L
Sbjct: 422 PPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSL 481

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ ++  G+KK PG SSI V+G++H+F+AG+ SH    EIY KLDE++ RL+S GYVPN 
Sbjct: 482 RQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNT 541

Query: 568 SH--LLQLVEEEDVQ------EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           S   L      +D        EQ L  HSE+LA+ +GL+S     P+ I KNLR+C DCH
Sbjct: 542 SCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCH 601

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  K+ SK+Y REI++RDRYRFH F+ G+CSC DYW
Sbjct: 602 SAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 320/568 (56%), Gaps = 43/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L+ A+ +FD++P+ + ++W  +I  Y     P ++  +F  +  +     N+FT    + 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           AAA +   R+G+ IHG ++++  + D  + ++L   Y  CG +  A  +F  +  +D+V+
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W +MI  + Q G  ++  +L+ ++                                    
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADL------------------------------------ 295

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                 L   + P+EFTF  VL+ACA   + ++G ++H  M + G     +  ++L+ MY
Sbjct: 296 ------LRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMY 349

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCGN+  A  VF      D+F W+++IAG+A  G   EA+  F  + ++  +P+ +TF 
Sbjct: 350 SKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFV 409

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL AC+H+GLVD+G  +F+ ++  YG+     HY C++D+L R+G  DEA   I KM +
Sbjct: 410 GVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSM 469

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W +LLG C+IH N++LA+ A   L E+EPEN    V L+NIYA  G W  V+++
Sbjct: 470 KPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKI 529

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           RK M   G+ K+PG S I +  ++H FL G+ SHP  KEI   L ++  R+K  G+VP+ 
Sbjct: 530 RKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDT 589

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           + +L  VE+E  +EQ L+ HSE+LA+A+G+IS     PI++ KNLR C DCHT  K ISK
Sbjct: 590 NFVLHDVEDEQ-KEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISK 648

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           + NR+I++RD  RFH F  G+CSC DYW
Sbjct: 649 ITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 12/324 (3%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+   +  +I++  +    + G+ +H  +  S F   LFI N L+  YA C  L  +  +
Sbjct: 68  PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  + ++D+ SWN +ISG+ + G  ++A  L+ +M     + D  +  A++S   +    
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMP----ERDNFSWTAMISGYVRHDR- 182

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                PNEAL +F  ++ S N   ++FT  S L+A A +  + IG +IH  + + G+  +
Sbjct: 183 -----PNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSD 237

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + ++L DMY KCG++++A  +F  +  RD+  W+ MI  +   G  +E  DLF+ +  
Sbjct: 238 EVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLR 297

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + ++PN  TF+ VL AC++    + G+     M  V G  P     + +V M  + G + 
Sbjct: 298 SGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRV-GFDPFSFAASALVHMYSKCGNMV 356

Query: 437 EAVEFIEKMPIVPGASVWGALLGA 460
            A    ++ P  P    W +L+  
Sbjct: 357 SAERVFKETP-QPDLFSWTSLIAG 379



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           EAL I H++       P    + +++ +C +   +  G ++H  +K  G     ++   L
Sbjct: 57  EALQILHQID-----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRL 111

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           ++MY KC +L  + ++F  +  RD+  W+ +I+G+A  G  +EA  LF +M E
Sbjct: 112 LEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 353/613 (57%), Gaps = 27/613 (4%)

Query: 55  KQIHTQMLRTGLFFDP--YSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLI 110
           +++H  +  +GL   P  Y ++ LF   A  +   +  A+++FD+IP    +   W TL+
Sbjct: 26  RELHAVLTTSGLKKAPRSYLSNALFQFYA--SSGEIATAQKLFDEIPLSDKDNVDWTTLL 83

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            ++S     + S  +F+++        +  +   +    A+L   R G+  HG+ +K  F
Sbjct: 84  SSFSRFGLLVNSMKLFVEMRRKRVEI-DHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGF 142

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
              + + N+L+  Y  CG ++    +F  + +K VVSW  ++   V+    ++  E++ E
Sbjct: 143 LTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDE 202

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
           M   NV    + +   L A           +  E L +  E+        +  T  S+LS
Sbjct: 203 MPERNVVAWTLMVAGYLGA----------GFTREVLELLAEMVFRCGHGLNFVTLCSMLS 252

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLN-------CYLTTSLIDMYTKCGNLDKALEVFHTV 343
           ACAQ G + IG  +H    K+ + +          + T+L+DMY KCGN+D +++VF  +
Sbjct: 253 ACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLM 312

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           + R+V  W+ + +G AM+G GR  +D+F  M   +VKP+ +TFT +L ACSH G+VDEG 
Sbjct: 313 RKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVR-EVKPDDLTFTALLSACSHLGMVDEGW 371

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
             F+ ++  YG+ P V HY CMVD+LGRAG ++EA   + +MP+ P   V G+LLG+C +
Sbjct: 372 RCFHSLQ-FYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSV 430

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
           H  +E+AE     L+++ P +    +L+SN+Y   G+ D    LR  +R  G++K PG S
Sbjct: 431 HGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLS 490

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE-DVQEQ 582
           SI VN  +H+F +G+ SHP  KE+Y KL+E++ R++S GYVP+ S L+   E + + +EQ
Sbjct: 491 SIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQ 550

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
           AL  HSE+LA+ +GL+  +P  P+ + KNLR+C DCH+  K++SK+Y+REI++RDR RFH
Sbjct: 551 ALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFH 610

Query: 643 HFRGGNCSCMDYW 655
            F+GG+CSC DYW
Sbjct: 611 QFKGGSCSCSDYW 623


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/567 (40%), Positives = 325/567 (57%), Gaps = 46/567 (8%)

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           YA  +FD++   +L +W T+I AY+ +    ++  + L+ V       +       + A 
Sbjct: 266 YAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL-LRKVQTKGMDVDTMMIGSTLLAC 324

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
           + L      + +HG  +K    D L + N +I  YA CG++  A  +F  I  KDVVSW 
Sbjct: 325 SGLRCLSHAKEVHGYTLKRGLSD-LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWT 383

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           SMIS +V  G                                           NEAL +F
Sbjct: 384 SMISCYVHNGL-----------------------------------------ANEALGVF 402

Query: 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           + L    +V PD  T VS+LSA A L A++ G +IH  + ++G  L      SL+DMY  
Sbjct: 403 Y-LMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYAC 461

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG+L+ A +VF   +S+ + +W+TMI  + M+G G+ A++LFS M++ K+ P+ +TF  +
Sbjct: 462 CGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLAL 521

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL++EG+     M+  Y + P  +HY C+VD+LGRA  L+EA  F++ M I P
Sbjct: 522 LYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEP 581

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
            A VW A LGAC+IH N +L E A   LL+L+P++ G+ VL+SN++A +G+W +V E+R 
Sbjct: 582 TAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRM 641

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL-KSFGYVPNRS 568
            M+  GLKK PGCS IEV  ++H FL  + SHP   +IY KL +I  +L K  GYVP   
Sbjct: 642 RMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTK 701

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            +L  V +E+ + Q L  HSERLAIAYGL+S     PIRI KNLRVC DCHT  KL+SK 
Sbjct: 702 LVLHNVGKEE-KVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKF 760

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
           + RE+++RD  RFHHF  G CSC D+W
Sbjct: 761 FERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 147/318 (46%), Gaps = 62/318 (19%)

Query: 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           + FTFP V+KA   +     G  IHG++IK  ++  +F++NSL+  YA C D+  A  +F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 198 -VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA----K 252
             M  + DVVSWNS+IS +   G   +A+ L+REM+   V  +  T+VA L AC     K
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 253 KRDLE--------------------------FGRWPNEALSIFHELQLSKNVN------- 279
           K  +E                          FG+    A  IF EL    N+        
Sbjct: 129 KLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAA-RIFDELDEKDNITWNSMIAG 187

Query: 280 -----------------------PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                                  PDE + +S+L+A  +LG +  G +IHA   K  +  N
Sbjct: 188 FTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSN 247

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             +  +LIDMY+KC  +  A  VF  + ++D+  W+T+IA +A   C  EAL L  ++Q 
Sbjct: 248 LRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQT 307

Query: 377 AKVKPNAVTFTNVLCACS 394
             +  + +   + L ACS
Sbjct: 308 KGMDVDTMMIGSTLLACS 325



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGL--FFDPYSASKLFTPCALGTFSSLEYAREMF 95
           + S +  C  ++ L   K++H   L+ GL           ++  C      ++ YA  MF
Sbjct: 317 IGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCG-----NINYATRMF 371

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           + I   ++ +W ++I  Y  +    ++  +F  L+  +   P+  T   ++ AAA L   
Sbjct: 372 ESIKCKDVVSWTSMISCYVHNGLANEALGVFY-LMKETSVEPDSITLVSILSAAASLSAL 430

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             G+ IHG + +  F  +    NSL+  YA CG L  AY VF+    K +V W +MI+ +
Sbjct: 431 NKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAY 490

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
              G  + A+EL+  ME + + PD +T +A+L AC+    +  G+   E +   ++L+
Sbjct: 491 GMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLE 548


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 362/623 (58%), Gaps = 27/623 (4%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKL-FTPCAL----GTFSSLEYAREM 94
           +LI++C     I   +++H+ +L       P+S S+  F    L    G    L YARE+
Sbjct: 65  ALIRRCGAANAISAARRLHSHILSL-----PHSNSQPPFLANLLIEMYGKCGRLPYAREL 119

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           F+ +P  N++TW   + A+S +    ++ ++F + +Y S   P+  TF  ++ A A++  
Sbjct: 120 FESMPSRNVHTWTVAMAAFSHNGCHSEA-LVFFRRMYQSGERPDRVTFSVILAAIAQMGA 178

Query: 155 FRV--GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
             +  G+ IH     S    ++ +  ++I  Y  CG L  A   F  +  K+ V+WN+M+
Sbjct: 179 AAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMM 238

Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
           + +   G   +A+EL+REM       D V   A+++A A     + GR   +AL ++  +
Sbjct: 239 TNYKLDGRDREALELFREMH----DADSVCWNAMIAAYA-----QHGR-GKQALDLYRSM 288

Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
             + ++ P + TFV+V+  CA+L A+  G  IHA+++      N  ++ +L+ MY KCG 
Sbjct: 289 HDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGC 348

Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           LD+AL+VFH++K +D   W+T+I+ +A +G   +AL L+  M    VKP  VTF  +L A
Sbjct: 349 LDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSA 408

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           CSH GLV +G  +F +M+  + + P V H+ C++D+LGR G L EA   ++ MPI   A 
Sbjct: 409 CSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAV 468

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
            W +LLGACK H +++    A   +++  P   G  VLLSNIYA  G+W +V ++RK M 
Sbjct: 469 QWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMA 528

Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
             G+KK PG S IE+   +H+F++G+SSHP  +EIY +L ++V  +K  GYVP+ S +  
Sbjct: 529 ARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFH 588

Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
            +EEE+ ++  +  HSE+LAI YG + V     +RIVKNLRVC DCHT  K +S++  R+
Sbjct: 589 DLEEEEKEDLLV-CHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRK 647

Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
           I++RD  RFH F  G+CSC DYW
Sbjct: 648 IVVRDAARFHLFENGSCSCRDYW 670


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/621 (33%), Positives = 348/621 (56%), Gaps = 64/621 (10%)

Query: 94   MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
            +F+++P+ +  +WN++I   SS+    ++  +F+++ +      +  T   V+ A A+  
Sbjct: 474  VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM-WTQGQELDSVTLLSVLPACAQSR 532

Query: 154  QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             +  G+ +HG  +K+    +  ++N+L+  Y+ C D      +F  +G+K+VVSW +MI+
Sbjct: 533  YWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMIT 592

Query: 214  GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA---------------------- 251
             +++ G F+K   L +EM ++ ++PD   + + L A A                      
Sbjct: 593  SYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEK 652

Query: 252  -------------KKRDLEFGR-------------W------------PNEALSIFHELQ 273
                         K R++E  R             W            PNE+ S+F ++ 
Sbjct: 653  LLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDML 712

Query: 274  LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
            L     P+  T   +L A A + +++ G +IHA   ++G   + Y + +L+DMY KCG L
Sbjct: 713  L--QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGAL 770

Query: 334  DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
              A  +F  +  +++  W+ MIAG+ M+G G+ A+ LF +M+ + ++P+A +F+ +L AC
Sbjct: 771  LVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830

Query: 394  SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
             HSGL  EGR FF  M+  Y + P +KHYTC+VD+L R G L EA+EFIE MPI P +S+
Sbjct: 831  CHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSI 890

Query: 454  WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
            W +LL  C+IH+NV+LAE     + +LEPEN G  VLL+NIYA+  +W+ V +L+  +  
Sbjct: 891  WVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGG 950

Query: 514  SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQL 573
             GL++  G S IEV  ++H F+A   +HP    I   LD++  R++  G+ P + + L +
Sbjct: 951  RGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYAL-M 1009

Query: 574  VEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
              ++ V ++AL  HS +LA+A+G++++   +PIR+ KN +VC  CH  AK ISK+ NREI
Sbjct: 1010 GADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREI 1069

Query: 634  LLRDRYRFHHFRGGNCSCMDY 654
            +LRD  RFH F GG CSC  Y
Sbjct: 1070 ILRDSSRFHRFEGGRCSCRGY 1090



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 182/417 (43%), Gaps = 70/417 (16%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGT--------FSSLEYAREMFDQIP-QPNLYT 105
           K +H   +++GL +   S        ALG+           +  AR +FD +  + N++ 
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHV 384

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN ++  Y+   E  +S  +F+Q+ +     P+E     ++K    L   R G   HG +
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQM-HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYI 443

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K  F     + N+LI FYA    +  A  VF  + ++D +SWNS+ISG    G   +AI
Sbjct: 444 VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAI 503

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR----------------WPNEALSIF 269
           EL+  M  +  + D VT+++VL ACA+ R    GR                  N  L ++
Sbjct: 504 ELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMY 563

Query: 270 HELQLSKNVN--------PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                 ++ N         +  ++ +++++  + G  D    +  +M   GI+ + +  T
Sbjct: 564 SNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVT 623

Query: 322 S-----------------------------------LIDMYTKCGNLDKALEVFHTVKSR 346
           S                                   L++MY KC N+++A  +F  V ++
Sbjct: 624 SALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNK 683

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           DV  W+T+I G++      E+  LFS M   + +PNAVT T +L A +    ++ GR
Sbjct: 684 DVISWNTLIGGYSRNNFPNESFSLFSDML-LQFRPNAVTMTCILPAAASISSLERGR 739



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 144/313 (46%), Gaps = 52/313 (16%)

Query: 49  KNIKQLKQIHTQMLRTG---LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           +++KQ K +H   +R G   L     +  +++  C      ++E AR +FD++   ++ +
Sbjct: 633 ESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKC-----RNVEEARLIFDRVTNKDVIS 687

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WNTLI  YS +  P +SF +F  ++    + PN  T   ++ AAA +     G+ IH   
Sbjct: 688 WNTLIGGYSRNNFPNESFSLFSDMLLQ--FRPNAVTMTCILPAAASISSLERGREIHAYA 745

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           ++  F +D + SN+L+  Y  CG L +A  +F  + KK+++SW  MI+G+   GF + AI
Sbjct: 746 LRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAI 805

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
            L+ +M    ++PD  +  A+L AC        GR        F  +Q    + P     
Sbjct: 806 ALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGR------RFFKAMQKEYKIEP----- 854

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
                                       KL  Y  T ++D+ ++ G+L +ALE   ++  
Sbjct: 855 ----------------------------KLKHY--TCIVDLLSRTGDLKEALEFIESMPI 884

Query: 346 R-DVFVWSTMIAG 357
             D  +W +++ G
Sbjct: 885 EPDSSIWVSLLHG 897



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 169/392 (43%), Gaps = 68/392 (17%)

Query: 88  LEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           L  AR +FD +P    ++  W +L+ AY+ + +  ++  +F Q+       P+      V
Sbjct: 152 LGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQM-QCCGVSPDAHAVSCV 210

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +K  + L     G+ IHG++ K        ++N+LI  Y+ CG +  A  VF  +  +D 
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +SWNSMI G    G+   A++L+ +M  +  +   VT+++VL ACA              
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG------------- 317

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL---------- 315
                                        LG   IG  +H    K G+            
Sbjct: 318 -----------------------------LGYGLIGKAVHGYSVKSGLLWGLDSVQSGID 348

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRM 374
           +  L + L+ MY KCG++  A  VF  + S+ +V VW+ ++ G+A  G   E+L LF +M
Sbjct: 349 DAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 375 QEAKVKPNAVTFTNVL-----CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
            E  + P+    + +L      +C+  GLV  G +    ++  +G    V     ++   
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYI----VKLGFGAQCAV--CNALISFY 462

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461
            ++ ++ +AV    +MP     S W +++  C
Sbjct: 463 AKSNMIGDAVLVFNRMPRQDTIS-WNSVISGC 493



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E A  +FD +   +  +WN++I    S+     +  +F ++ ++     +  T   V+ 
Sbjct: 255 MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKM-WSQGTEISSVTVLSVLP 313

Query: 148 AAARLVQFRVGQAIHGMVIKS----------SFEDDLFISNSLIHFYAICGDLAMAYCVF 197
           A A L    +G+A+HG  +KS          S  DD  + + L+  Y  CGD+A A  VF
Sbjct: 314 ACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVF 373

Query: 198 -VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
             M  K +V  WN ++ G+ + G FE+++ L+ +M    + PDE  +  +L         
Sbjct: 374 DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKC------- 426

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
                                        ++ LS CA+      G+  H  + K G    
Sbjct: 427 -----------------------------ITCLS-CAR-----DGLVAHGYIVKLGFGAQ 451

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           C +  +LI  Y K   +  A+ VF+ +  +D   W+++I+G +  G   EA++LF RM  
Sbjct: 452 CAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWT 511

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
              + ++VT  +VL AC+ S     GR+        Y V  G+   T + + L
Sbjct: 512 QGQELDSVTLLSVLPACAQSRYWFAGRVVHG-----YSVKTGLIGETSLANAL 559



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 139/334 (41%), Gaps = 59/334 (17%)

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKK--DVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +   L+  Y  CGDL  A  VF  +  +  DV  W S++S + + G F+           
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQ----------- 186

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
                                         EA+S+F ++Q    V+PD      VL   +
Sbjct: 187 ------------------------------EAVSLFRQMQCC-GVSPDAHAVSCVLKCVS 215

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
            LG++  G  IH  ++K G+   C +  +LI +Y++CG ++ A  VF ++  RD   W++
Sbjct: 216 SLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNS 275

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS-----------HSGLVDEG 402
           MI G    G    A+DLFS+M     + ++VT  +VL AC+           H   V  G
Sbjct: 276 MIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSG 335

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA-C 461
            ++   ++ V   +      + +V M  + G +  A    + M       VW  ++G   
Sbjct: 336 LLW--GLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYA 393

Query: 462 KIHENVE-LAEYACSHLLELEPENHGALVLLSNI 494
           K+ E  E L+ +   H L + P+ H    LL  I
Sbjct: 394 KVGEFEESLSLFVQMHELGIAPDEHAISCLLKCI 427


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 334/584 (57%), Gaps = 62/584 (10%)

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
           + PY PN+FTF  ++ A+A  +    GQ +H ++ K  F+ ++F+  +L+  YA C D+ 
Sbjct: 4   SGPY-PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 62

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME-NVKPDEVTMVAVLSAC 250
            A  VF  + ++++VSWNSMI GF     +++A+ +++++  E  V P+EV++ +VLSAC
Sbjct: 63  SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 122

Query: 251 AKKRDL-----------EFG------------------RWPNEALSIFH----------- 270
           A    L           +FG                  R+ +E + +F            
Sbjct: 123 ANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWN 182

Query: 271 -------------------ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311
                               +   + + PDE +F +VL + A L A+  G  IH ++ K 
Sbjct: 183 VLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKL 242

Query: 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
           G   N  +  SLI MY KCG+L  A +VF  ++  +V  W+ MI+ + ++GC  + ++LF
Sbjct: 243 GYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELF 302

Query: 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
             M    ++P+ VTF  VL ACSH+G V+EG   FN M+ ++ + PG +HY CMVD+LGR
Sbjct: 303 EHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGR 362

Query: 432 AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491
           AG LDEA  FIE MP+ P  SVWGALLGAC+ + N+++   A   L E+EP N G  VLL
Sbjct: 363 AGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLL 422

Query: 492 SNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKL 551
           +N+  ++G+ +  +E+R+ M V+G++KEPGCS I+V      F A + SH    EIY  L
Sbjct: 423 ANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKML 482

Query: 552 DEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKN 611
           +++   +K  GYV     +   +EE + +EQ L  HSE+LA+A+GL+++    PIRI KN
Sbjct: 483 EKLEKLVKKKGYVAETEFVTNHLEENE-EEQGLWYHSEKLALAFGLLTLPIDSPIRIKKN 541

Query: 612 LRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           LR CG CHTV KL SK+++REI++RD  RFH F  G CSC DYW
Sbjct: 542 LRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 325/576 (56%), Gaps = 53/576 (9%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR  FD I  P++ +WN +  AY     P ++ ++F +++      P+  TF   + 
Sbjct: 271 LSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEG-VRPSVATFITALT 329

Query: 148 AAARL---VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--K 202
           A A         +G+ I  ++ ++  E D  ++N+ ++ YA CG LA A  VF  I   +
Sbjct: 330 ACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTR 389

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRW 261
           +D ++WNSM++ +   G  ++A EL++ ME E  VKP++VT VAVL A   +  +  GR 
Sbjct: 390 RDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGR- 448

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                                    +IHA++   G + +  +  
Sbjct: 449 -----------------------------------------EIHARVVSNGFESDTVIQN 467

Query: 322 SLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           +L++MY KCG+LD A  +F    S   DV  W++++AG+A YG    AL LF  MQ+  V
Sbjct: 468 ALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGV 527

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           +PN +TF + L AC+H G +++G    + M P +G+VP  KH++C+VD+LGR G LDEA 
Sbjct: 528 RPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAE 587

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           + +E+         W ALL ACK  + +E  E     +++L+PE   + ++L+++YA  G
Sbjct: 588 KLLERTSQAD-VITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAG 646

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           +W+  + +RK M   G++ +PGCS++EVN E+H F AG+ SHP  +EIY +L+ +   +K
Sbjct: 647 RWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIK 706

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           + GYV +   +L  V +E  +E+ L  HSE+LAIA+GL+S     P+R++KNLRVC DCH
Sbjct: 707 AAGYVADTGLVLHDVSQEH-KERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCH 765

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           T  KLISK+  R+IL+RD  R+HHF  G CSC DYW
Sbjct: 766 TATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 224/492 (45%), Gaps = 97/492 (19%)

Query: 39  HPVFSLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           H + +L+  C    N+   ++IH+Q+       +    + L   ++ C      SL  A+
Sbjct: 8   HALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCG-----SLIDAK 62

Query: 93  EMFDQIPQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           + FD++P+    ++ TWN +I A+  +    ++  +F  + ++    PN  TF  V+ + 
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 150 --ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--- 204
             A L+     +AIHG ++ +  E + F+  +L+  Y   G L  A+ VF+    ++   
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 205 -VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC------------- 250
            +V+ ++MIS   Q G+ ++++ L+  M +E  KP  VT+V+VL+AC             
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVL 242

Query: 251 -----------------------AKKRDLEFGR-------------W------------P 262
                                  A+  DL   R             W            P
Sbjct: 243 EQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRP 302

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQL---GAMDIGVQIHAKMKKQGIKLNCYL 319
            EAL +F  + L + V P   TF++ L+ACA      A  IG +I + +++ G++ +  +
Sbjct: 303 REALVLFERMLL-EGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAV 361

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
             + ++MY KCG+L  A  VF  +    RD   W++M+A +  +G G+EA +LF  M+  
Sbjct: 362 ANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAE 421

Query: 378 K-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRA 432
           K VKPN VTF  VL A +    + +GR    ++     V  G +  T     +++M  + 
Sbjct: 422 KLVKPNKVTFVAVLDASTSRTSIAQGREIHARV-----VSNGFESDTVIQNALLNMYAKC 476

Query: 433 GLLDEAVEFIEK 444
           G LD+A    +K
Sbjct: 477 GSLDDAQAIFDK 488



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 137/308 (44%), Gaps = 53/308 (17%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTL 109
           K+I + +   GL  D   A+    ++  C      SL  AR +F++I   + +  TWN++
Sbjct: 344 KRIQSLLEEAGLEGDTAVANATLNMYAKCG-----SLADARAVFERISPTRRDCITWNSM 398

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           + AY       ++F +F  +       PN+ TF  V+ A+        G+ IH  V+ + 
Sbjct: 399 LAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNG 458

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           FE D  I N+L++ YA CG L  A  +F      ++DV++W S+++G+ Q G  E+A++L
Sbjct: 459 FESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKL 518

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           +  M+ + V+P+ +T ++ L+AC     LE G             +L   + PD      
Sbjct: 519 FWTMQQQGVRPNHITFISALTACNHGGKLEQG------------CELLSGMTPD------ 560

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
                                   GI       + ++D+  +CG LD+A ++       D
Sbjct: 561 -----------------------HGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQAD 597

Query: 348 VFVWSTMI 355
           V  W  ++
Sbjct: 598 VITWMALL 605



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 18/197 (9%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V P+    +++++AC+ LG +  G +IH+++  +  + N  L  +LI MY+KCG+L  A 
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 338 EVFHTV---KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCAC 393
           + F  +     RDV  W+ MI+ F   G  REAL LF  M  +    PN+VTF +VL +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVK------HYTCMVDMLGRAGLLDEAVE-FIEKMP 446
             +GL+         +  ++G + G          T +VD  G+ G LD+A E F+ K  
Sbjct: 123 VEAGLLS-----LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 447 IVPGASV--WGALLGAC 461
             P  S+    A++ AC
Sbjct: 178 EEPSTSLVTCSAMISAC 194



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 115/266 (43%), Gaps = 48/266 (18%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           PN      ++ A + L     G+ IH  +    FE++  + N+LI  Y+ CG L  A   
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 197 FVMI---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMVAVLSACAK 252
           F  +    K+DVV+WN+MIS F++ G   +A++L+R+M+ +    P+ VT V+VL +C  
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC-- 122

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
              +E G    E +   H   +   +  + F   +++                       
Sbjct: 123 ---VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV----------------------- 156

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVF----HTVKSRDVFVWSTMIAGFAMYGCGREAL 368
                       D Y K G+LD A EVF        S  +   S MI+     G  +E+L
Sbjct: 157 ------------DSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESL 204

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACS 394
            LF  M     KP+ VT  +VL ACS
Sbjct: 205 RLFYAMNLEGTKPSGVTLVSVLNACS 230


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 332/624 (53%), Gaps = 56/624 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMF 95
           S +  C  ++ L   +++H  +++     D   A+  F   AL     T   +  AR++F
Sbjct: 124 SALPACSRLELLDVGREMHAYVIK-----DDELAANSFVASALVDMYATHEQVGKARQVF 178

Query: 96  DQIPQPN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           D +P     L  WN +I  Y+ +    ++  +F ++   + + P E T   V+ A AR  
Sbjct: 179 DMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSE 238

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
            F   +A+HG V+K     + F+ N+L+  YA  G   +A  +F M+   DVVSWN++I+
Sbjct: 239 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLIT 298

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G V  G    A +L REM+                       LE G              
Sbjct: 299 GCVVQGHVADAFQLAREMQ----------------------QLEEG-------------- 322

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
               V P+  T +++L  CA L A   G +IH    +  +  +  + ++L+DMY KCG L
Sbjct: 323 ---GVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCL 379

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCA 392
             +  VF  +  R+   W+ +I  + M+G G EA  LF RM    + +PN VTF   L A
Sbjct: 380 ALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA 439

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-A 451
           CSHSG+VD G   F+ ME  +GV P      C+VD+LGRAG LDEA   +  M       
Sbjct: 440 CSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQV 499

Query: 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           S W  +LGAC++H NV L E A   LLELEPE     VLL NIY+  G+W   +E+R  M
Sbjct: 500 SAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRM 559

Query: 512 RVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLL 571
           R  G+ KEPGCS IEV+G IH+F+AGES+HP  +E+++ ++ +   + + GY P+ S +L
Sbjct: 560 RRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVL 619

Query: 572 QLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNR 631
             +++ D +   L  HSE+LAIA+GL+   P   IR+ KNLRVC DCH  AK +SK+  R
Sbjct: 620 HDMDDGD-KAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGR 678

Query: 632 EILLRDRYRFHHFRGGNCSCMDYW 655
           EI+LRD  RFHHFR G CSC DYW
Sbjct: 679 EIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 158/364 (43%), Gaps = 72/364 (19%)

Query: 138 NEFTFPFVIKAAARL----VQFRVGQAIHGMVIKSSF--EDDLFISNSLIHFYAICGDLA 191
             FT   V++A + L       R+G+  H   +K+        F  N+L+  YA  G +A
Sbjct: 9   TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 68

Query: 192 MAYCVFVMI--GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
            A  +F     G+ DVV+WN+M+S  VQ G F++A++   +M    V+PD VT  + L A
Sbjct: 69  DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 128

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-M 308
           C++                   L+L                       +D+G ++HA  +
Sbjct: 129 CSR-------------------LEL-----------------------LDVGREMHAYVI 146

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGRE 366
           K   +  N ++ ++L+DMY     + KA +VF  V    + + +W+ MI G+A  G   E
Sbjct: 147 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 206

Query: 367 ALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH---- 421
           AL LF+RM+ EA   P   T  +VL AC+ S         F   E V+G V  VK     
Sbjct: 207 ALRLFARMEAEAGFVPCETTMASVLPACARS-------EAFAGKEAVHGYV--VKRGMAG 257

Query: 422 ----YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
                  ++DM  R G  D A   I  M  +P    W  L+  C +  +V  A      +
Sbjct: 258 NRFVQNALMDMYARLGKTDVA-RRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM 316

Query: 478 LELE 481
            +LE
Sbjct: 317 QQLE 320


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 325/565 (57%), Gaps = 44/565 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR +F+ I + +  TW T++   + +    ++  +F ++        +++TF  ++ A  
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI-DQYTFGSILTACG 288

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L     G+ IH  + ++ +ED++F+ ++L+  Y+ C  + +A  VF  +  K+++SW +
Sbjct: 289 ALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTA 348

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           MI G+ Q G  E                                         EA+ +F 
Sbjct: 349 MIVGYGQNGCGE-----------------------------------------EAVRVFS 367

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           E+Q    + PD+FT  SV+S+CA L +++ G Q H      G++    ++ +L+ +Y KC
Sbjct: 368 EMQ-RDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKC 426

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G+++ A  +F  +   D   W+ ++ G+A +G  +E +DLF +M    VKP+ VTF  VL
Sbjct: 427 GSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            ACS SGLVD+GR +F+ M+  + +VP   HYTCM+D+  R+G L +A EFI++MP  P 
Sbjct: 487 SACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPD 546

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
           A  W  LL AC++  ++E+ ++A  +LL+L+P+N  + VLL +++A  G+W++V++LR+ 
Sbjct: 547 AFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRG 606

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHL 570
           MR   +KKEPGCS I+   ++H F A + SHP  + IY KL  + +++   GY P+ S +
Sbjct: 607 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSV 666

Query: 571 LQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYN 630
           L  V + + +   L+ HSE+LAIA+GLI V P  PIRIVKNLRVC DCH   K ISK+  
Sbjct: 667 LHDVADAE-KVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITG 725

Query: 631 REILLRDRYRFHHFRGGNCSCMDYW 655
           R+IL+RD  RFH F  G CSC D+W
Sbjct: 726 RDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 220/449 (48%), Gaps = 44/449 (9%)

Query: 18  SLPRHPNPT-------TLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
           +LP HP+PT       T   ++G   H   VF  +   +N+     + + + R GL  D 
Sbjct: 39  TLP-HPSPTYLLNTLLTAYASSGLLPHARRVFDAMPG-RNLVTGNSLLSALARAGLVRD- 95

Query: 71  YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
                                  +F  +PQ +  ++N L+  +S +    ++   ++ L+
Sbjct: 96  --------------------MERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 131 YN-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
            + +   P+  T   V+  A+ L    +G+ +H  +++  F    F  + L+  YA  G 
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGP 195

Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
           +  A  VF  +  K+VV  N+MI+G ++     +A  L+  +E    + D +T   +++ 
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIE----ERDSITWTTMVTG 251

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
             +   LE     +EAL +F  ++ ++ V  D++TF S+L+AC  L A++ G QIHA + 
Sbjct: 252 LTQN-GLE-----SEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 304

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           +   + N ++ ++L+DMY+KC ++  A  VF  +  +++  W+ MI G+   GCG EA+ 
Sbjct: 305 RTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVR 364

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           +FS MQ   +KP+  T  +V+ +C++   ++EG   F+ +  V G+ P V     +V + 
Sbjct: 365 VFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLY 423

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           G+ G +++A    ++M      S W AL+
Sbjct: 424 GKCGSIEDAHRLFDEMSFHDQVS-WTALV 451



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 146/327 (44%), Gaps = 54/327 (16%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S++  C  +  L   KQIH  + RT    + +  S L   ++ C      S+  A  +F 
Sbjct: 282 SILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKC-----RSVRLAEAVFR 336

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++   N+ +W  +I  Y  +    ++  +F ++  +    P++FT   VI + A L    
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG-IKPDDFTLGSVISSCANLASLE 395

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G   H + + S     + +SN+L+  Y  CG +  A+ +F  +   D VSW +++ G+ 
Sbjct: 396 EGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  ++ I+L+ +M  + VKPD VT + VLSAC++   ++ GR      S FH +Q   
Sbjct: 456 QFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR------SYFHSMQQDH 509

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
           ++ P +  +                                   T +ID+Y++ G L +A
Sbjct: 510 DIVPLDDHY-----------------------------------TCMIDLYSRSGWLKQA 534

Query: 337 LEVFHTV-KSRDVFVWSTMIAGFAMYG 362
            E    + +  D F W+T+++   + G
Sbjct: 535 EEFIKQMPRCPDAFGWATLLSACRLRG 561



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 41/276 (14%)

Query: 160 AIHGMVIKS-SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           A+H +++++       ++ N+L+  YA  G L  A  VF  +  +++V+ NS++S   + 
Sbjct: 31  AVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARA 90

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
           G       L+  +     + D V+  A+L+  ++            AL     L+    V
Sbjct: 91  GLVRDMERLFTSLP----QRDAVSYNALLAGFSRAGAHARAAGAYVAL-----LRDEAGV 141

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            P   T   V+   + LG   +G Q+H ++ + G     +  + L+DMY K G +  A  
Sbjct: 142 RPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARR 201

Query: 339 V-------------------------------FHTVKSRDVFVWSTMIAGFAMYGCGREA 367
           V                               F  ++ RD   W+TM+ G    G   EA
Sbjct: 202 VFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEA 261

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           LD+F RM+   V  +  TF ++L AC     ++EG+
Sbjct: 262 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGK 297


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 321/578 (55%), Gaps = 63/578 (10%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           ++ CK  KQ+ QI  Q++  G  ++ Y   KL T CA  T   + YAR++FDQIP PN+ 
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICA--TLKRMTYARQLFDQIPDPNIA 165

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
            WN++ R Y+ S    +   +F Q+       PN FTFP V+K+  ++     G+ +H  
Sbjct: 166 LWNSMFRGYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCF 224

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV-------------------------- 198
           +IK  F  + F+  +LI  Y+  G +  AY +F                           
Sbjct: 225 LIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 284

Query: 199 -----MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
                +  ++DVV WN M+SG+++GG   +A +L+ EM   +V    +    VL   A  
Sbjct: 285 RRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDV----MFWNTVLKGYATN 340

Query: 254 RDLE-----FGRWPN--------------------EALSIFHELQLSKNVNPDEFTFVSV 288
            ++E     F   P                     E L  F  +    +V P++ T V+V
Sbjct: 341 GNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTV 400

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           LSACA+LGA+D+G  +H   +  G+K N Y+  +L+DMY KCG ++ A+ VF  + ++D+
Sbjct: 401 LSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDL 460

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+T+I G AM+  G +AL+LF +M+ A  KP+ +TF  +LCAC+H GLV++G  +F  
Sbjct: 461 ISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQS 520

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M   Y ++P ++HY CMVDML RAG L++A  F+ KMP+     +W  LLGAC+I++NVE
Sbjct: 521 MADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVE 580

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE A   L+ELEP+N    V+LSNIY   G+W++V+ L+  MR +G KK PGCS IEVN
Sbjct: 581 LAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVN 640

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
             + +F + +  HP  +EIY  L  +V  L+SFGYVP+
Sbjct: 641 DAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPD 678


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/591 (36%), Positives = 328/591 (55%), Gaps = 45/591 (7%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLY 104
           I Q  ++ Q+  I  Q+      FD    S +++     ++  L   R++F+ +P+ ++ 
Sbjct: 104 IDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY-LGSLRKVFEMMPKRDIV 162

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WNT+I   + +     + M+  ++  N+   P+ FT   V+   A  V    G+ IHG 
Sbjct: 163 SWNTVISGNAQNGMHEDALMMVREMG-NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 221

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
            I++ ++ D+FI +SLI  YA C  +  +  VF M+ + D +SWNS+I+G VQ G F+  
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFD-- 279

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
                                                  E L  F ++ ++K + P+  +
Sbjct: 280 ---------------------------------------EGLKFFQQMLIAK-IKPNHVS 299

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F S++ ACA L  + +G Q+H  + +     N ++ ++L+DMY KCGN+  A  +F  ++
Sbjct: 300 FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKME 359

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
             D+  W+ MI G+A++G   +A+ LF RM+   VKPN V F  VL ACSH+GLVDE   
Sbjct: 360 LYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 419

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +FN M   Y ++PG++HY  + D+LGR G L+EA EFI  M I P  SVW  LL AC++H
Sbjct: 420 YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH 479

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
           +N+ELAE     L  ++P+N GA VLLSNIY+  G+W +  +LR  MR  G+KK+P CS 
Sbjct: 480 KNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSW 539

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           IE+  ++H F+AG+ SHP    I   L  ++ +++  GYV + + +L  VEEE  +   L
Sbjct: 540 IEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQ-KRYLL 598

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
             HSERLAI +G+IS      IR+ KNLRVC DCHT  K ISK+  REI+ 
Sbjct: 599 CSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVF 649



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 133/260 (51%), Gaps = 12/260 (4%)

Query: 40  PVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           P+F+   +  N+ + K+IH   +R G   D +  S L    A  T   ++ +  +F  +P
Sbjct: 204 PIFA---EYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT--RVDDSCRVFYMLP 258

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           Q +  +WN++I     +    +    F Q++  +   PN  +F  ++ A A L    +G+
Sbjct: 259 QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI-AKIKPNHVSFSSIMPACAHLTTLHLGK 317

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            +HG +I+S F+ ++FI+++L+  YA CG++  A  +F  +   D+VSW +MI G+   G
Sbjct: 318 QLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG 377

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
               AI L++ ME+E VKP+ V  +AVL+AC+    ++      EA   F+ +     + 
Sbjct: 378 HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVD------EAWKYFNSMTQDYRII 431

Query: 280 PDEFTFVSVLSACAQLGAMD 299
           P    + +V     ++G ++
Sbjct: 432 PGLEHYAAVADLLGRVGRLE 451


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/497 (41%), Positives = 317/497 (63%), Gaps = 20/497 (4%)

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAIC--GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           H   +K       +++N+++  Y+ C  GDL +A  +F  +  KD V+ ++MI+ +    
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
            FE A +++  M     + D V   +V++  A          PNEAL+++  +  S+ V 
Sbjct: 57  -FESAYKVFELMP----EKDIVAWNSVINGFA------LNGKPNEALTLYKRMG-SEGVE 104

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
           PD FT VS+LSACA+L  + +G + H  M K G+  N +   +L+D+Y KCG + +A ++
Sbjct: 105 PDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKI 164

Query: 340 FHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           F  +   R+V  W+++I G A+ G G+EAL+ F  M+   + P+ +TF  VL ACSH G+
Sbjct: 165 FDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGI 224

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EG  +F +M+  Y +VP ++HY CMVD+LGRAGLL EA ++I+ MP+ P A +W  LL
Sbjct: 225 VNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLL 284

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC IH ++ L  +A + LL+LEP++ G  VLLSN+YA   +W +V E+R+ M   G++K
Sbjct: 285 GACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRK 344

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
            PG S +E+   +H+F+ G+ +HP  + IY  L E+  +LK  GYVP+ +++L  +EEE+
Sbjct: 345 TPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEE 404

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E AL  HSE++AIA+ LI+  P  PIRI+KNLRVC DCH   KLISK++ R+I++RD 
Sbjct: 405 -KESALFYHSEKIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDC 463

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHFR G+CSC DYW
Sbjct: 464 SRFHHFRDGSCSCRDYW 480



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 28/221 (12%)

Query: 58  HTQMLRTGLFFDPYSASKL---FTPCALGTF-----------------------SSLEYA 91
           H Q ++ G+F   Y A+ +   ++ C +G                         +  E A
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
            ++F+ +P+ ++  WN++I  ++ + +P ++  ++ ++  +    P+ FT   ++ A A 
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMG-SEGVEPDGFTMVSLLSACAE 119

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG-KKDVVSWNS 210
           L    +G+  H  ++K     +L  +N+L+  YA CG ++ A  +F  +G +++VVSW S
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +I G    GF ++A+E +++ME E + P E+T V VL AC+
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACS 220


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 350/616 (56%), Gaps = 60/616 (9%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P+ N+ +W +++R Y       ++ ++F ++       P +    + +    
Sbjct: 97  ARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM-------PEKNVVSWTVMLGG 149

Query: 151 RLVQFRVGQA------------------IHGMVIKSSFED-----------DLFISNSLI 181
            +   RV +A                  I G+  +    +           ++    S+I
Sbjct: 150 LIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMI 209

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP-DE 240
             YA+   + +A  +F ++  K+ V+W +M+ G+ + G   +A EL++ M ++ V   + 
Sbjct: 210 SGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG 269

Query: 241 VTMVAVLSACAKK--------RDLEFGRWPN------------EALSIFHELQLSKNVNP 280
           + M   L+    K        ++ + G W              EAL++F  +Q  + V P
Sbjct: 270 MIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQ-REGVRP 328

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           +  + +S+LS C  L ++D G Q+H+++ +    L+ Y+++ LI MY KCG+L     VF
Sbjct: 329 NFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVF 388

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
               S+D+ +W+++IAG+A +G G +AL++F  M  +   P+ +TF  VL AC ++G V 
Sbjct: 389 DRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVK 448

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           EG   F  M+  Y V    +HY CMVD+LGRAG L+EA+  IE MP+   A VWGALL A
Sbjct: 449 EGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSA 508

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
           C+ H+N++LAE A   LL+LEP + G  +LLSN+YA   +W +V+ELRK MR   + K P
Sbjct: 509 CRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSP 568

Query: 521 GCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDV 579
           GCS IEV+ ++H F  G S SHP  + I  KL+++ A L+  GY P+ S ++  V+EED 
Sbjct: 569 GCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEED- 627

Query: 580 QEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRY 639
           +  +L  HSE++A+AYGL+ V   +PIR++KNLRVCGDCH+  KLI+++  REI+LRD  
Sbjct: 628 KVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDAN 687

Query: 640 RFHHFRGGNCSCMDYW 655
           RFHHF+ G CSC D+W
Sbjct: 688 RFHHFKDGLCSCRDFW 703



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 157/373 (42%), Gaps = 62/373 (16%)

Query: 71  YSASKLFTPCALGTFSSL---EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFL 127
           +S+S   T C +  F+ L   + AR +FD +    + +WN ++  Y  +  P ++  +F 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 128 QLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187
           ++       P   T  +    +  +    + +A    V     E ++    S++  Y   
Sbjct: 72  KM-------PERNTISWNGLVSGYVKNGMISEARK--VFDKMPERNVVSWTSMVRGYVQE 122

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           G +  A  +F  + +K+VVSW  M+ G ++ G  ++A  L+  + +++V      M+  L
Sbjct: 123 GLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVA-STNMIGGL 181

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
             C++ R        +EA  IF E+   +NV      + S++S  A    +D+  ++   
Sbjct: 182 --CSEGR-------LSEAREIFDEMP-QRNV----VAWTSMISGYAMNNKVDVARKLFEV 227

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALE----------------------------- 338
           M  +    N    T+++  YT+ G +++A E                             
Sbjct: 228 MPDK----NEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKA 283

Query: 339 --VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  +K +D   WS +I  +   G   EAL LFS MQ   V+PN  +  ++L  C   
Sbjct: 284 RWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSL 343

Query: 397 GLVDEGRMFFNQM 409
             +D GR   +Q+
Sbjct: 344 ASLDHGRQVHSQL 356



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 146/333 (43%), Gaps = 32/333 (9%)

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           +S F     I+   I ++A  G +  A  +F  +  K V SWN++++G+       +A +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
           L+ +M   N     ++   ++S   K   +      +EA  +F ++   +NV     ++ 
Sbjct: 69  LFDKMPERNT----ISWNGLVSGYVKNGMI------SEARKVFDKMP-ERNV----VSWT 113

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           S++    Q G +D    +  +M ++    N    T ++    + G +D+A  +F  +  +
Sbjct: 114 SMVRGYVQEGLIDEAELLFWRMPEK----NVVSWTVMLGGLIEDGRVDEARRLFDMIPVK 169

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           DV   + MI G    G   EA ++F  M +     N V +T+++   + +  VD  R  F
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQR----NVVAWTSMISGYAMNNKVDVARKLF 225

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M     V      +T M+    R+G ++EA E  + MP+ P A+  G ++G   ++  
Sbjct: 226 EVMPDKNEVT-----WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMG-FGLNGE 279

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           V  A +    + E +     AL+    IY + G
Sbjct: 280 VGKARWVFDQMKEKDDGTWSALI---KIYERKG 309


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 327/571 (57%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A  +F+ +P   + +WN +I  Y+ +    ++   F +++  S   P+EFT   V+ 
Sbjct: 244 MDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLS 303

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDV 205
           A A L    +G+ +H  +++S       ++N+LI  YA  G +  A  V    ++   +V
Sbjct: 304 ACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNV 363

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+ +++ G+V+ G  + A E++  M   +V      +V            E     +EA
Sbjct: 364 ISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVG----------YEQNGHNDEA 413

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  L +     P+ +T  +VLS CA L  ++ G QIH K  +   + +  ++ S++ 
Sbjct: 414 MELF-RLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVT 472

Query: 326 MYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY + G+L  A  VF  V  R +   W++MI   A +G G +A+ LF  M    VKP+ +
Sbjct: 473 MYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRI 532

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           TF  VL AC+H G VDEG+ +F Q++  +G+VP + HY CMVD+L RAGL  EA EFI++
Sbjct: 533 TFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQ 592

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A  WG+LL AC++H+N +LAE A   LL ++P N GA   LSN+Y+  G+W++ 
Sbjct: 593 MPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDA 652

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           +++ K  +   +KKE G S   +   +H F A +  HP    +Y    ++   +K  G+V
Sbjct: 653 AKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFV 712

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  V++E ++E+ L+ HSE+LAIA+GL+S      +RI+KNLRVC DCHT  K 
Sbjct: 713 PDLQSVLHDVDDE-LKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKF 771

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI+LRD  RFHHF+ G CSC DYW
Sbjct: 772 ISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 50/285 (17%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM-----AYCVFVMI--GKKDVVSWNS 210
           G+AIH   +K+      ++ N+L+ +YA            A  +F  I   +++V +WNS
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNS 101

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           ++S + + G    A  ++ EM      P+   +   +      R   FG    EA+ +F 
Sbjct: 102 LLSLYAKSGRLADARAVFAEM------PERDPVSWTVMVVGLNRVGRFG----EAIKMFL 151

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++ ++  ++P +FT  +VLS+CA   A  +G ++H+ + K G+     +  S+++MY KC
Sbjct: 152 DM-VTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC 210

Query: 331 GN-------------------------------LDKALEVFHTVKSRDVFVWSTMIAGFA 359
           G+                               +D AL +F  +  R +  W+ +IAG+ 
Sbjct: 211 GDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYN 270

Query: 360 MYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             G   +AL  FSRM   + + P+  T T+VL AC++ G+V  G+
Sbjct: 271 QNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGK 315


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 326/569 (57%), Gaps = 44/569 (7%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +LE A+ +FD++P  N+ TWN ++   +      ++ ++F ++   S + P+E++   V+
Sbjct: 150 NLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELS-FMPDEYSLGSVL 208

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           +  A L     GQ +H  V+K  FE +L +  SL H Y   G +     V   +    +V
Sbjct: 209 RGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLV 268

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +WN+++SG  Q G+FE  ++ Y  M+M   +P                            
Sbjct: 269 AWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRP---------------------------- 300

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                         D+ TFVSV+S+C++L  +  G QIHA+  K G      + +SL+ M
Sbjct: 301 --------------DKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSM 346

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y++CG L  +++ F   K RDV +WS+MIA +  +G G EA+ LF+ M++  +  N +TF
Sbjct: 347 YSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITF 406

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            ++L ACSH GL D+G   F+ M   YG+   ++HYTC+VD+LGR+G L+EA   I  MP
Sbjct: 407 LSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMP 466

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
           +   A +W  LL ACKIH+N E+A      +L ++P++  + VLL+NIY+   +W NVSE
Sbjct: 467 VKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSE 526

Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
           +R+ M+   +KKEPG S +EV  ++H+F  G+  HP   EI   L+E+ + +K  GYVP+
Sbjct: 527 VRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPD 586

Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
            S +L  ++ E+ +EQ L  HSE+LAIA+ L++     PIR++KNLRVC DCH   K IS
Sbjct: 587 TSSVLHDMDNEE-KEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYIS 645

Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++   EI++RD  RFHHF+ G CSC DYW
Sbjct: 646 EIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 29/381 (7%)

Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           ++F  FL  ++  P       F  +++A   L    +G+ +H ++  S    D FISN L
Sbjct: 56  EAFESFLSEIWAEPRL-----FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHL 110

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           ++ Y+  G+L  A  +F  + +++++S N MI  ++  G  E A  L+ EM   NV    
Sbjct: 111 LNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNV---- 166

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
            T  A+++   K    E      EAL +F  +    +  PDE++  SVL  CA LGA+  
Sbjct: 167 ATWNAMVTGLTKFEMNE------EALLLFSRMN-ELSFMPDEYSLGSVLRGCAHLGALLA 219

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G Q+HA + K G + N  +  SL  MY K G++     V + +    +  W+T+++G A 
Sbjct: 220 GQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQ 279

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            G     LD +  M+ A  +P+ +TF +V+ +CS   ++ +G+    +     G    V 
Sbjct: 280 KGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKA-GASSEVS 338

Query: 421 HYTCMVDMLGRAGLLDEAVE-FIE--KMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
             + +V M  R G L ++++ F+E  +  +V    +W +++ A   H      E A    
Sbjct: 339 VVSSLVSMYSRCGCLQDSIKTFLECKERDVV----LWSSMIAAYGFHGQ---GEEAIKLF 391

Query: 478 LELEPEN--HGALVLLSNIYA 496
            E+E EN     +  LS +YA
Sbjct: 392 NEMEQENLPGNEITFLSLLYA 412



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 62/326 (19%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTF----SSLEYAREMF 95
           S+++ C ++  L   +Q+H  +++ G          L   C+L        S+     + 
Sbjct: 206 SVLRGCAHLGALLAGQQVHAYVMKCGF------ECNLVVGCSLAHMYMKAGSMHDGERVI 259

Query: 96  DQIPQPNLYTWNTLI--RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           + +P  +L  WNTL+  +A     E +      +++   + + P++ TF  VI + + L 
Sbjct: 260 NWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKM---AGFRPDKITFVSVISSCSELA 316

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
               G+ IH   +K+    ++ + +SL+  Y+ CG L  +   F+   ++DVV W+SMI+
Sbjct: 317 ILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIA 376

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
            +   G  E+AI+L+ EME EN+  +E+T +++L A                        
Sbjct: 377 AYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYA------------------------ 412

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM-KKQGIKLNCYLTTSLIDMYTKCGN 332
                             C+  G  D G+ +   M KK G+K      T L+D+  + G 
Sbjct: 413 ------------------CSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGC 454

Query: 333 LDKALEVFHTVKSR-DVFVWSTMIAG 357
           L++A  +  ++  + D  +W T+++ 
Sbjct: 455 LEEAEAMIRSMPVKADAIIWKTLLSA 480


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 341/638 (53%), Gaps = 80/638 (12%)

Query: 57  IHTQMLRTGL---FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           +H  ++R+G     F   S  +L++ C      SL  A ++F  +   ++  W+++I AY
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCG-----SLGDAVKLFKGMIVRDVVIWSSMIAAY 414

Query: 114 SSSAEPIQSFMIFLQLV-----------------YNSPYFPNEFTF----PFVIKAAARL 152
                  ++  IF Q++                    P      T     P+ +KA    
Sbjct: 415 GIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMR 474

Query: 153 VQFRVGQAIHGMVIKSSFED-DLFISN----SLIHFYAICGDLAMAYCVFVMIGKKDVV- 206
             FR       +     F+  D+  SN     L +   I    A+ Y  F  I    +V 
Sbjct: 475 AHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVF 534

Query: 207 ---------SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
                     WN MI GF   G F  ++ELY +M  + +KPD                  
Sbjct: 535 EDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPD------------------ 576

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
                            +  V P+  + +SVL AC  LGA+  G   H+ + + G + + 
Sbjct: 577 -----------------NSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI 619

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
            + T+++DMY+KCG+LD A  +F     +D+  WS MIA + ++G GR+A+DLF +M +A
Sbjct: 620 LVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKA 679

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
            V+P+ VTFT VL ACSHSGL++EG+M+F  M   + +   + +Y CMVD+LGRAG L E
Sbjct: 680 GVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSE 739

Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
           AV+ IE MP+ P AS+WG+LLGAC+IH N++LAE    HL  L+P + G  VLLSNIYA 
Sbjct: 740 AVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAA 799

Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
             +W+ V ++RK M   G  K  G S +E + ++HKF  G+ SHP  +++Y+KL+E+ A 
Sbjct: 800 KSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAP 859

Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
           +K  GYVP    +L  +EEE  +E AL+ HSERLAIA+GLI+  P   +RI KNLR+CGD
Sbjct: 860 MKHLGYVPLTDFVLHDIEEE-AKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGD 918

Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           CH   KLISK+ NR IL+RD +RFH F  G CSC DYW
Sbjct: 919 CHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 210/457 (45%), Gaps = 85/457 (18%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQ 100
           L + C N + + Q+H+Q+ +TG+  D + A+KL   +  CA     SL+ AR++FD+ P 
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCA-----SLQAARKVFDETPH 64

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN++ WN+ +R+Y    +  ++  +F  ++  +   P+ FT P  +KA A L    +G+ 
Sbjct: 65  PNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKV 124

Query: 161 IHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           IHG   K+     D+F+ ++L+  Y+ CG +  A  VF    + D V W SM++G+ Q  
Sbjct: 125 IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNN 184

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVL------SACAKKRDLEFGRWP----------- 262
             E+A+ L+ +M M +    ++ +V  L      + C K     F + P           
Sbjct: 185 DPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 244

Query: 263 ---------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI 313
                    NEAL++FHE+ + K   P+  T VS L ACA    ++ G +IH        
Sbjct: 245 ACYANNEAANEALNLFHEM-IEKRFEPNSVTVVSALQACAVSRNLEEGKKIH-------- 295

Query: 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373
           K+  +                           +DV  W  +++G+A  G   +++ +F  
Sbjct: 296 KIAVW---------------------------KDVVSWVALLSGYAQNGMAYKSMGVFRN 328

Query: 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV------PGVKHYTCMVD 427
           M    ++P+AV    +L A S  G+       F Q   ++G V        V     +++
Sbjct: 329 MLSDGIQPDAVAVVKILAASSELGI-------FQQALCLHGYVVRSGFNSNVFVGASLIE 381

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +  + G L +AV+  + M IV    +W +++ A  IH
Sbjct: 382 LYSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIH 417



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 61/309 (19%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           A ++F++  +P+   W +++  Y  + +P ++  +F Q                      
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ---------------------- 195

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                        MV+   F+ DL + NSL++ YA  G   +A  +F  + +KDV+SW++
Sbjct: 196 -------------MVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------WPN 263
           MI+ +       +A+ L+ EM  +  +P+ VT+V+ L ACA  R+LE G+       W +
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302

Query: 264 ------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
                             +++ +F  + LS  + PD    V +L+A ++LG     + +H
Sbjct: 303 VVSWVALLSGYAQNGMAYKSMGVFRNM-LSDGIQPDAVAVVKILAASSELGIFQQALCLH 361

Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
             + + G   N ++  SLI++Y+KCG+L  A+++F  +  RDV +WS+MIA + ++G G 
Sbjct: 362 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGG 421

Query: 366 EALDLFSRM 374
           EAL++F +M
Sbjct: 422 EALEIFDQM 430


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/681 (33%), Positives = 363/681 (53%), Gaps = 70/681 (10%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  L++ C  ++ L   KQIH  ++R G   +    + + +  +    + LE AR  FD 
Sbjct: 235 IVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRN--NRLELARVAFDS 292

Query: 98  IPQPNLYTWNTLIRAY-----------------SSSAEP-----------------IQSF 123
               N  +WN++I +Y                 SS  +P                  ++ 
Sbjct: 293 TEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENV 352

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           +   + + ++ + P+  +    ++A   L  F +G+ IHG +++S  E D+++  SL+  
Sbjct: 353 LTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDK 412

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y     L  A  VF     K++ +WNS+ISG+   G F+ A +L  +M+ E +KPD VT 
Sbjct: 413 YIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTW 472

Query: 244 VAVLSACAK-----------KRDLEFGRWPN------------------EALSIFHELQL 274
            +++S  +             R    G  PN                  +AL  F ++Q 
Sbjct: 473 NSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQ- 531

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334
            +NV P+  T  ++L ACA    + IG +IH    + G   + Y+ T+LIDMY K G L 
Sbjct: 532 EENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLK 591

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
            A EVF  +K + +  W+ M+ G+A+YG G E   LF  M++  V+P+A+TFT +L  C 
Sbjct: 592 VAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCK 651

Query: 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           +SGLV +G  +F+ M+  Y + P ++HY+CMVD+LG+AG LDEA++FI  +P    AS+W
Sbjct: 652 NSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIW 711

Query: 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514
           GA+L AC++H+++++AE A  +LL LEP N     L+ NIY+   +W +V  L++ M   
Sbjct: 712 GAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTAL 771

Query: 515 GLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLV 574
           G+K     S I+V   IH F     SHP   EIY +L ++++ +K  GYV + + + Q +
Sbjct: 772 GVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNI 831

Query: 575 EEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           ++ + +E+ L  H+E+LA+ YGL+  +   PIR+VKN R+C DCHT AK IS   NREI 
Sbjct: 832 DDSE-KEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIF 890

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
           LRD  RFHHF  G CSC D W
Sbjct: 891 LRDGGRFHHFMNGECSCKDRW 911



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 223/472 (47%), Gaps = 37/472 (7%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115
           ++H  +++ G   D + +  L        +  ++ A ++FD+ P    + WNT++ A   
Sbjct: 152 EVHACLVKRGFHVDVHLSCALIN--LYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLR 209

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
           S +   +  +F ++   S     + T   +++A  +L     G+ IHG VI+     +  
Sbjct: 210 SEKWEDALELFRRMQSASAK-ATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTS 268

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           I NS++  Y+    L +A   F      +  SWNS+IS +        A +L +EME   
Sbjct: 269 ICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSG 328

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
           VKPD +T  ++LS       L  G + N  L+ F  LQ S    PD  +  S L A   L
Sbjct: 329 VKPDIITWNSLLSG-----HLLQGSYEN-VLTNFRSLQ-SAGFKPDSCSITSALQAVIGL 381

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
           G  ++G +IH  + +  ++ + Y+ TSL+D Y K   LDKA  VFH  K++++  W+++I
Sbjct: 382 GCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLI 441

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
           +G+   G    A  L ++M+E  +KP+ VT+ +++   S SG  +E     N+++ + G+
Sbjct: 442 SGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSL-GL 500

Query: 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHENVELAEY 472
            P V  +T M+    +     +A++F  +M    + P ++    LL AC           
Sbjct: 501 TPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRAC----------- 549

Query: 473 ACSHLLELEPE------NHGAL------VLLSNIYAKTGKWDNVSELRKHMR 512
           A S LL++  E       HG L        L ++Y K GK     E+ ++++
Sbjct: 550 AGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIK 601



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 126/566 (22%), Positives = 229/566 (40%), Gaps = 90/566 (15%)

Query: 10  ETLSTPVISLPR-----HPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRT 64
           + +S+P  S P+     HP     T+N+  + H      +IK  K  + L  +   M+R 
Sbjct: 19  QLVSSPQFSPPKFSPFFHPFGEIRTLNSVRELHAQ----IIKMPKK-RNLVTMDGSMMRN 73

Query: 65  GL-FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSF 123
            L F D  SA+K+F          + +AR         N   WN+ I  ++S        
Sbjct: 74  YLQFGDFESATKVFF---------VGFAR---------NYLLWNSFIEEFASFGGDSHEI 115

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           +   + +++     +      V+K    L++  +G  +H  ++K  F  D+ +S +LI+ 
Sbjct: 116 LAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINL 175

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y     +  A  VF     ++   WN+++   ++   +E A+EL+R M+           
Sbjct: 176 YEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQ----------- 224

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
               SA AK  D                            T V +L AC +L A++ G Q
Sbjct: 225 ----SASAKATD---------------------------GTIVKLLQACGKLRALNEGKQ 253

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           IH  + + G   N  +  S++ MY++   L+ A   F + +  +   W+++I+ +A+  C
Sbjct: 254 IHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDC 313

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
              A DL   M+ + VKP+ +T+ ++L      G  +     F  ++   G  P     T
Sbjct: 314 LNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSA-GFKPDSCSIT 372

Query: 424 CMVDM---LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
             +     LG   L  E   +I +  +     V  +L+     ++ ++ AE    H    
Sbjct: 373 SALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHH---T 429

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           + +N  A   L + Y   G +DN  +L   M+  G+K +    +  V+G     ++G S 
Sbjct: 430 KNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSG---YSMSGRSE 486

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPN 566
             L          ++ R+KS G  PN
Sbjct: 487 EALA---------VINRIKSLGLTPN 503



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 45/326 (13%)

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           S S   I   M   QLV +  + P +F+ PF       +      + +H  +IK   + +
Sbjct: 5   SHSPSSISLGMSEAQLVSSPQFSPPKFS-PF-FHPFGEIRTLNSVRELHAQIIKMPKKRN 62

Query: 174 LF-ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           L  +  S++  Y   GD   A  VF +   ++ + WNS I  F                 
Sbjct: 63  LVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFAS--------------- 107

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                                    FG   +E L++F EL   K V  D      VL  C
Sbjct: 108 -------------------------FGGDSHEILAVFKELH-DKGVKFDSKALTVVLKIC 141

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
             L  + +G+++HA + K+G  ++ +L+ +LI++Y K   +D A +VF     ++ F+W+
Sbjct: 142 LALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWN 201

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           T++          +AL+LF RMQ A  K    T   +L AC     ++EG+     +   
Sbjct: 202 TIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYV-IR 260

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEA 438
           +G V        +V M  R   L+ A
Sbjct: 261 FGRVSNTSICNSIVSMYSRNNRLELA 286


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 368/681 (54%), Gaps = 78/681 (11%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL--FTPCALGTFSSLEYAREMFDQ 97
           SLI Q  N K L   K +HT +L++G  F  +    +  +  C++ T      AR++FD+
Sbjct: 6   SLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVIT-----EARKLFDE 60

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P  ++ TWN++I ++ S  +  ++  ++  +++     P+ +TF  + KA + +   R 
Sbjct: 61  MPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEG-VLPDAYTFSAIFKAFSEMGVSRE 119

Query: 158 GQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           GQ  HG+ +   FE  D F++  ++  YA  G +  A  VF  +  KDVV + ++I G+ 
Sbjct: 120 GQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYN 179

Query: 217 QGGFFEKAIELYREM--------------------------------------EMENVKP 238
           Q G   +A+E++ +M                                       +E+V  
Sbjct: 180 QRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVA 239

Query: 239 DEVTMVAVLSACAKKRD-----------------------LEFGRWPNEALSIFHELQLS 275
            + +++ + S C    D                       ++ GR    ALS+F E+ + 
Sbjct: 240 SQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGR-EEIALSMFREM-IR 297

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            +++P+ FTF S+L AC+ L  ++ G QIHA   K G+  N Y+  +LI +Y KCGN++K
Sbjct: 298 CSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEK 357

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF ++   DV   +TMI  +A  G G EAL+LF RM++   KPN VTF ++L AC++
Sbjct: 358 ARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNN 417

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG   F+ +   + +     HYTCM+D+LGRA   +EA   IE+    P    W 
Sbjct: 418 AGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWR 476

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL ACKIH  VE+AE     +L+  P + G  +LL+NIYA  GKWDNV E++   R   
Sbjct: 477 TLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLR 536

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           LKK P  S ++++ E+H F+AG+ SHP   EI   L E++ ++ + GY P+   +LQ +E
Sbjct: 537 LKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLE 596

Query: 576 EEDVQEQALNLHSERLAIAYGLI-SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EE  +  AL  HSE+LAIA+ L  +   +  IRI KNLRVCGDCH+  K +S L  R+I+
Sbjct: 597 EEK-KISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDII 655

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
            RD  RFHHF+GG CSC DYW
Sbjct: 656 ARDAKRFHHFKGGICSCKDYW 676


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 326/571 (57%), Gaps = 25/571 (4%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR +FD IP P+  ++NTL+  + +  +   +  +F  +        N         
Sbjct: 62  LADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKN 121

Query: 148 AAAR--LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-D 204
            A+      FR+      M ++++        N+++   A  GD+  A  +F    +K D
Sbjct: 122 GASEEAAAMFRI------MPVRNAVS-----WNAMVAALACSGDMGAAEDLFRNAPEKTD 170

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
            + W +M+SG++  G  +KA+E +  M + N+    V+  AV++   K          ++
Sbjct: 171 AILWTAMVSGYMDTGNVQKAMEFFGAMPVRNL----VSWNAVVAGYVKNSR------ADD 220

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
           AL +F  +     V P+  T  SVL  C+ L A+  G Q+H    K  +  N  + TSL+
Sbjct: 221 ALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLL 280

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
            MY KCG+L+ A +VF  + ++D+  W+ MI+G+A +G G +A+ LF +M++  V P+ +
Sbjct: 281 SMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWI 340

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T   VL AC H+GL D G   F  M+  Y + P + HY+CMVD+L RAGLL+ AV  I  
Sbjct: 341 TLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHS 400

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP  P  S +G LL AC++++N+E AE+A   L+E +P+N GA V L+NIYA   KW +V
Sbjct: 401 MPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADV 460

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           S +R+ M+ + + K PG S +E+ G  H+F + +  HP    I+ KLD +   +K+ GYV
Sbjct: 461 SRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYV 520

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+    L  VE+  ++ Q L  HSE+LAIA+GLIS  P   +RI KNLR+CGDCH  AKL
Sbjct: 521 PDLDFALHDVEDS-LKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKL 579

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI+LRD  RFHHFRGG+CSC DYW
Sbjct: 580 ISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 6/194 (3%)

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
           +++ A E F  +P  NL +WN ++  Y  ++    +  +F  +V +S   PN  T   V+
Sbjct: 186 NVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVL 245

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
              + L     G+ +H   +K     ++ +  SL+  Y  CGDL  A  VF  +  KD+V
Sbjct: 246 LGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIV 305

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           +WN+MISG+ Q G   +AI+L+ +M+ E V PD +T++AVL+AC      +FG      +
Sbjct: 306 AWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG------I 359

Query: 267 SIFHELQLSKNVNP 280
             F  +Q +  + P
Sbjct: 360 QCFETMQEAYKIEP 373



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 13/200 (6%)

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
           L+T  +    + G+L  A E F + + +    ++ ++AG+A    G   L    R+ ++ 
Sbjct: 14  LSTVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYA-KASGLIRLADARRLFDSI 72

Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
             P+ V++  +L      G +D  R  F+ M      V  V  +  MV  L + G  +EA
Sbjct: 73  PHPDTVSYNTLLSCHFACGDIDGARRVFSTMP-----VKDVTSWNTMVSGLSKNGASEEA 127

Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI--YA 496
                 MP+    S W A++ A     ++  AE     L    PE   A++  + +  Y 
Sbjct: 128 AAMFRIMPVRNAVS-WNAMVAALACSGDMGAAE----DLFRNAPEKTDAILWTAMVSGYM 182

Query: 497 KTGKWDNVSELRKHMRVSGL 516
            TG      E    M V  L
Sbjct: 183 DTGNVQKAMEFFGAMPVRNL 202


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 325/569 (57%), Gaps = 44/569 (7%)

Query: 87   SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            ++E AR  F+ +   ++  W+ +I  Y+   +  Q+F +F++++ +S   PNEF+   V+
Sbjct: 682  NIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS-VSPNEFSLSSVL 740

Query: 147  KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
            +A A +    +G+ IH   IK   E +LF+ N+LI  YA C D+  +  +F  +   + V
Sbjct: 741  QACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEV 800

Query: 207  SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
            SWN++I G+ + GF E A                                         L
Sbjct: 801  SWNTIIVGYSKSGFGEAA-----------------------------------------L 819

Query: 267  SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
            S+F E++ + +V   + T+ SVL ACA   +++   Q+H  ++K     +  ++ SLID 
Sbjct: 820  SVFREMR-AASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDS 878

Query: 327  YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
            Y KCG +  A E+F T+K  D+  W+ +I+G+A++G    A +LF  M +  +K N +TF
Sbjct: 879  YAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITF 938

Query: 387  TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
              +L  C  +GLV +G   F+ M   +G+ P ++HYTC+V +LGRAG L++A+ FI  +P
Sbjct: 939  VALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIP 998

Query: 447  IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
              P A VW ALL +C +H+NVEL  ++   +LE+EP++    VLLSN+Y+  G  D V+ 
Sbjct: 999  SAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAF 1058

Query: 507  LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
             RK MR  G++KEPG S +E+ GE+H F  G   HP  + I + L+ +  +    GYVP+
Sbjct: 1059 FRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPD 1118

Query: 567  RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
               +L  +EEE  + + L +HSERLA+AYGL+   P  PIRI+KNLR C DCH + K+IS
Sbjct: 1119 TDEVLHDLEEEQ-KVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVIS 1177

Query: 627  KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            K+  +EI++RD  RFHHF  G CSC DYW
Sbjct: 1178 KIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 165/358 (46%), Gaps = 51/358 (14%)

Query: 55  KQIHTQMLRTGLF--FDPYSASKLFTP-CALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           + +H  ++R+G     D + A+ L      +G F S   A  +FD +P+ N+ ++ TL++
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGS---AHRVFDGLPERNMVSFVTLVQ 504

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
            ++   E  ++  +F +L +   +  N+F    V+K    +    +   +H    K   +
Sbjct: 505 GHALRGEFEEASALFQRLRWEG-HEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHD 563

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
            + F+ ++LI  Y++CG ++ A  VF  I  KD V+W +M+S                  
Sbjct: 564 RNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS------------------ 605

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS-KNVNPDEFTFVSVLS 290
                             C  + D      P   L IF +++++   +NP  F   SVL 
Sbjct: 606 ------------------CYSENDC-----PENTLQIFSKMRVAVSKLNP--FALTSVLR 640

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A   L ++ +G  IHA   K       ++  +L+DMY KCGN++ A   F  V + DV +
Sbjct: 641 AAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVIL 700

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
           WS MI+ +A      +A +LF RM  + V PN  + ++VL AC++  L+D G+   N 
Sbjct: 701 WSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNH 758



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMF 95
           S+++ C N+  L   KQIH   ++ G        S+LF   AL       S +E + E+F
Sbjct: 738 SVLQACANMPLLDLGKQIHNHAIKIG------HESELFVGNALIDLYAKCSDMESSLEIF 791

Query: 96  DQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
             +   N  +WNT+I  YS S     +  +F ++   S     + T+  V++A A     
Sbjct: 792 SSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAAS-VPSTQVTYSSVLRACASTASI 850

Query: 156 R-VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
             VGQ +H ++ KS+F  D  +SNSLI  YA CG +  A  +F  + + D+VSWN++ISG
Sbjct: 851 NHVGQ-VHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISG 909

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
           +   G    A EL+  M   ++K +++T VA+LS C     +  G      LS+F  ++L
Sbjct: 910 YAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQG------LSLFDSMRL 963

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMD 299
              + P    +  ++    + G ++
Sbjct: 964 DHGIEPSMEHYTCIVRLLGRAGRLN 988


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/626 (37%), Positives = 339/626 (54%), Gaps = 60/626 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFD-PYSASKLFTPCALGTFS-SLEYAREMFDQIPQ 100
           SL+     +   KQ H ++   G     P   ++     AL   + +L +A  +   +P 
Sbjct: 18  SLLPHLSTLSHYKQFHARLHALGTLHSYPSLRARFLDRLALLPHADALPHALLLLRSLPY 77

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP----NEFTFPFVIKAAARLVQFR 156
           P    +N  +R  ++S  P +S ++    +  +P  P    +  +  F +KA AR     
Sbjct: 78  PATNDFNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAF 137

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
               +H ++++     D+ +  +L+  YA CGDLA A  VF  +  +DV +WN++++G  
Sbjct: 138 ATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLA 197

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL---- 272
           QG                                           PN AL +F  L    
Sbjct: 198 QG-----------------------------------------TEPNLALVLFRRLAGSF 216

Query: 273 -QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
            +L     P+E T V+ LSACAQLGA+  G+  H   +  G   N  +  +LIDMY+KCG
Sbjct: 217 RELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCG 276

Query: 332 NLDKALEVFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           +L +ALEVFH++K   R +  ++  I   +M+G G +AL LF  M  A+++P+ VT+  V
Sbjct: 277 SLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMP-ARIEPDEVTYLAV 335

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L  C+H+GLVD+GR  F+ M     V P +KHY  +VD+LGRAG L EA + I  MP   
Sbjct: 336 LGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPA 391

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  LLGA K+H NV+LAE A + L +L     G  VLLSN+YA   +W +V  +R 
Sbjct: 392 DIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRD 451

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR + +KK PG S  E++G +HKF+ G+  H   +EIY  LDEI +++   GY P  S+
Sbjct: 452 TMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSKICELGYEPETSN 511

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  + EE+ ++ AL+ HSE+LAIA+GLIS  P + IR++KNLR+CGDCH VAKLISK Y
Sbjct: 512 VLHDIGEEE-KQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDCHVVAKLISKAY 570

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            R I++RDR RFH F  G CSC DYW
Sbjct: 571 GRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/634 (33%), Positives = 350/634 (55%), Gaps = 56/634 (8%)

Query: 28  LTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLF---TPCA 81
           L +N  +        +L+  C   K+I+ +K++   M+ +GL  D Y  +++      C 
Sbjct: 121 LELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCG 180

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           +     +  AR +FD++P+ N+ +WNT+I     + +  ++F +FL +++          
Sbjct: 181 M-----MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFL-MMWQDFSDAGSRM 234

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  +I+A+A L     G+ +H   +K+    D+F++ +LI  Y+ CG +  A CVF  + 
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           +K  V WNS+I+G+   G+ E                                       
Sbjct: 295 EKTTVGWNSIIAGYALHGYSE--------------------------------------- 315

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EALS+++E++ S  V  D FTF  ++  CA+L +++   Q HA + + G  L+    T
Sbjct: 316 --EALSMYYEMRDS-GVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANT 372

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+D+Y+K G ++ A  VF  +  ++V  W+ +IAG+  +G G EA+++F RM    + P
Sbjct: 373 ALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVP 432

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N VTF  VL ACS+SGL D G   F  M   + + P   HY CM+++LGR GLLDEA   
Sbjct: 433 NHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 492

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+  P  P  ++W ALL AC++H+N EL ++A   L  + PE     V+L NIY ++G+ 
Sbjct: 493 IKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRL 552

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           +  + + + ++  GL+  P CS IE+  + + F++G+  H   KEIY KLDE++  +   
Sbjct: 553 EEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKH 612

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP    LL  V+E+  +E+ L  HSE+LAIA+GLI+     P++IV++ R+CGDCH+ 
Sbjct: 613 GYVPQDKFLLPDVDEQ--EERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSA 670

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KLI+ +  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 671 IKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 2/221 (0%)

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C +   L F +  +EAL +F  L+L+   + D  T+ +++SAC  L ++    ++   M 
Sbjct: 99  CGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMI 158

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
             G+  + YL   ++ M+ KCG +  A  +F  +  +++  W+T+I G    G   EA  
Sbjct: 159 NSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFR 218

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF  M +      +  F  ++ A +  GL+  GR   +      GV   V     ++DM 
Sbjct: 219 LFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMY 277

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            + G +++A    ++MP       W +++    +H   E A
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGYALHGYSEEA 317


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 351/618 (56%), Gaps = 65/618 (10%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD +P+ N+ +W +++R Y       ++  +F ++       P      + +    
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM-------PRRNVVSWTVMIGG 154

Query: 151 RLVQFRVGQA--------------IHGMV-----------IKSSFED----DLFISNSLI 181
            L + R+  A              +  M+            +  F++    ++F   +++
Sbjct: 155 LLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMV 214

Query: 182 HFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR-----------E 230
             YA  G + +A  +F ++ +++ VSW +M+ G+ Q G  ++A EL+            E
Sbjct: 215 SGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNE 274

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN------------EALSIFHELQLSKNV 278
           M ++     E+    ++    K+RD   G W              EAL +F  +Q  + V
Sbjct: 275 MILQFGLAGEMHRARMMFEGMKERDE--GTWNAMIKVFERKGLDLEALGLFARMQ-REGV 331

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             +  + +SVLS CA L ++D G Q+HA++ +     + Y+ + LI MY KCG+L +A  
Sbjct: 332 ALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKG 391

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F+    +DV +W++MI G++ +G G EAL++F  M  + V+P+ VTF  VL ACS+SG 
Sbjct: 392 IFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGK 451

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V EG   F  M+  Y V PG++HY CMVD+LGRAG +DEA+E +EKMP+ P A VWGALL
Sbjct: 452 VKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC+ H  ++LAE A   L +LEP+N G  VLLS++YA  G+W +V  LRK +    +K 
Sbjct: 512 GACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVIKF 571

Query: 519 EPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
            PGCS IEV  ++H F  G+S SHP    I   L+++   L+  GY P+ S +L  V+EE
Sbjct: 572 -PGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEE 630

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +  +L  HSERLA+AYGL+ V    PIR++KNLRVCGDCH+  KLI+K+  REI+LRD
Sbjct: 631 E-KTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRD 689

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G+CSC D+W
Sbjct: 690 ANRFHHFKDGSCSCKDFW 707



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 11/229 (4%)

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN--SPYFPNE 139
            G    +  AR MF+ + + +  TWN +I+ +      +++  +F ++     +  FP+ 
Sbjct: 279 FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSM 338

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            +   V+   A L     G+ +H  +++S F+ DL++++ LI  Y  CGDL  A  +F  
Sbjct: 339 IS---VLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNR 395

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259
              KDVV WNSMI+G+ Q G  E+A+ ++ +M    V+PDEVT + VLSAC+    ++  
Sbjct: 396 FLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVK-- 453

Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
               E   IF  ++ +  V P    +  ++    + G +D  +++  KM
Sbjct: 454 ----EGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKM 498



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 124/522 (23%), Positives = 208/522 (39%), Gaps = 146/522 (27%)

Query: 83  GTFSSLEYAREMFDQ--IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           G    +  AR++FD   +PQ  + +WN ++ AY  S +P  + ++F Q+       P   
Sbjct: 30  GRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM-------PQRN 82

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T  F                                 N +I  Y   G +A A  VF ++
Sbjct: 83  TVSF---------------------------------NGMISGYVKNGMVADARKVFDVM 109

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC----AKK--- 253
            +++VVSW SM+ G+VQ G  E+A +L+ EM   NV    V +  +L       AKK   
Sbjct: 110 PERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFD 169

Query: 254 ----RDL-----------EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
               +D+           + GR  +EA  +F E+++ +NV    FT+ +++S  A+ G +
Sbjct: 170 MIPEKDVVVVTNMIGGYCQVGRL-DEARELFDEMKV-RNV----FTWTTMVSGYAKNGRV 223

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT---------------- 342
           D+  ++   M ++    N    T+++  YT+ G + +A E+F                  
Sbjct: 224 DVARKLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQF 279

Query: 343 ---------------VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
                          +K RD   W+ MI  F   G   EAL LF+RMQ   V  N  +  
Sbjct: 280 GLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMI 339

Query: 388 NVLCACSHSGLVDEGRMF--------FNQMEPVYGVV----------------------P 417
           +VL  C+    +D GR          F+Q   V  V+                       
Sbjct: 340 SVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK 399

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGAC----KIHENVELA 470
            V  +  M+    + GL +EA+     M    + P    +  +L AC    K+ E  E+ 
Sbjct: 400 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIF 459

Query: 471 E-YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           E   C++ +E   E++  +V   ++  + G+ D   EL + M
Sbjct: 460 EAMKCTYQVEPGIEHYACMV---DLLGRAGRVDEAMELVEKM 498


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 313/566 (55%), Gaps = 45/566 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P   L TWN +I          +   +F ++ +   + P+E+T   V   +A
Sbjct: 42  ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM-HGLGFSPDEYTLGSVFSGSA 100

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    +GQ IHG  IK   E DL +++SL H Y   G L     V   +  +++V+WN+
Sbjct: 101 GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNT 160

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I G  Q G  E  + LY+ M+              +S C                    
Sbjct: 161 LIMGNAQNGCPETVLYLYKMMK--------------ISGC-------------------- 186

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                    P++ TFV+VLS+C+ L     G QIHA+  K G      + +SLI MY+KC
Sbjct: 187 --------RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 238

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNV 389
           G L  A + F   +  D  +WS+MI+ +  +G G EA++LF+ M E   ++ N V F N+
Sbjct: 239 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 298

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL D+G   F+ M   YG  PG+KHYTC+VD+LGRAG LD+A   I  MPI  
Sbjct: 299 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 358

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  LL AC IH+N E+A+     +L+++P +    VLL+N++A   +W +VSE+RK
Sbjct: 359 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 418

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR   +KKE G S  E  GE+H+F  G+ S    KEIYS L E+   +K  GY P+ + 
Sbjct: 419 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 478

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  ++EE+ +E  L  HSE+LA+A+ L+ +    PIRI+KNLRVC DCH   K IS + 
Sbjct: 479 VLHDMDEEE-KESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIK 537

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI LRD  RFHHF  G CSC DYW
Sbjct: 538 NREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 147/320 (45%), Gaps = 42/320 (13%)

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE-- 240
            Y+  GD   A  V+  + KK+ +S N +I+G+V+ G    A +++ EM      PD   
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEM------PDRKL 54

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
            T  A+++   +    EF     E LS+F E+      +PDE+T  SV S  A L ++ I
Sbjct: 55  TTWNAMIAGLIQ---FEFNE---EGLSLFREMH-GLGFSPDEYTLGSVFSGSAGLRSVSI 107

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           G QIH    K G++L+  + +SL  MY + G L     V  ++  R++  W+T+I G A 
Sbjct: 108 GQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQ 167

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
            GC    L L+  M+ +  +PN +TF  VL +CS   +  +G+    +   + G    V 
Sbjct: 168 NGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI-GASSVVA 226

Query: 421 HYTCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVWGALLGACKIH--------------- 464
             + ++ M  + G L D A  F E+        +W +++ A   H               
Sbjct: 227 VVSSLISMYSKCGCLGDAAKAFSERED--EDEVMWSSMISAYGFHGQGDEAIELFNTMAE 284

Query: 465 -ENVELAE-------YACSH 476
             N+E+ E       YACSH
Sbjct: 285 QTNMEINEVAFLNLLYACSH 304


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/611 (34%), Positives = 339/611 (55%), Gaps = 57/611 (9%)

Query: 51  IKQLKQIHTQMLRTGLFFD---PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           ++  K+IH QM+R+ L  D     S   ++  C       ++YA  +FDQI   ++  WN
Sbjct: 243 LRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCG-----RMDYAERLFDQITDKSIVAWN 297

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            +I  YS +A+  +SF    ++       P+  T   ++   A+L    +G+++HG  I+
Sbjct: 298 AMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIR 357

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           + F   L +  +L+  Y  CG L  A C+F  + +++++SWN+MI+ + + G   KA+ L
Sbjct: 358 NGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTL 417

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           ++++                                           +K + PD  T  S
Sbjct: 418 FQDL------------------------------------------CNKTLKPDATTIAS 435

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L A A+L ++    QIH  + K  +  N +++ S++ MY KCGNL +A E+F  +  +D
Sbjct: 436 ILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKD 495

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           V  W+T+I  +A++G GR +++LFS M+E   +PN  TF ++L +CS +GLV+EG  +FN
Sbjct: 496 VISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFN 555

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M+  Y + PG++HY C++D++GR G LD A  FIE+MP+ P A +WG+LL A +   +V
Sbjct: 556 SMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDV 615

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           ELAE A  H+L LE +N G  VLLSN+YA+ G+W++V  ++ HM+  GL+K  GCS +++
Sbjct: 616 ELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDL 675

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN-- 585
           + +  +F+  + S      +Y  LD I  ++    YV    H L      D++++  N  
Sbjct: 676 SSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYV----HSLTKFRPSDLEKKRANSA 731

Query: 586 -LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
             HS RLAI +GLIS     P+ + KN+R+C  CH  AK IS+   REI++RD   FHHF
Sbjct: 732 KSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHF 791

Query: 645 RGGNCSCMDYW 655
            GG+CSC DYW
Sbjct: 792 NGGHCSCGDYW 802



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 191/416 (45%), Gaps = 63/416 (15%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A ++F+ + Q + + WN +IR +  +     +   + ++ +      N FT+PFVIK
Sbjct: 76  MKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN-FTYPFVIK 134

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A   L     G+ +HG VIKS  + D++I NSLI  YA  G +  A  VF  +  +D+VS
Sbjct: 135 ACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVS 194

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           WNSMISG+V  G   +++  +REM+   +K D  +++ +L AC+    LE          
Sbjct: 195 WNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACS----LE---------- 240

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                                       G +  G +IH +M +  ++L+  + TSL+DMY
Sbjct: 241 ----------------------------GFLRNGKEIHCQMMRSRLELDVMVQTSLVDMY 272

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTF 386
            KCG +D A  +F  +  + +  W+ MI G+++     E+     +MQE  K+ P+ +T 
Sbjct: 273 AKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITM 332

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
            N+L  C+    +  G+   +      G +P +   T +VDM G  G L           
Sbjct: 333 INLLPPCAQLEAILLGKS-VHGFAIRNGFLPHLVLETALVDMYGECGKLK---------- 381

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
             P   ++G +     I  N  +A Y  +       EN  A+ L  ++  KT K D
Sbjct: 382 --PAECLFGQMNERNLISWNAMIASYTKN------GENRKAMTLFQDLCNKTLKPD 429



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 191/431 (44%), Gaps = 63/431 (14%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           +IK C  +  L   +++H +++++GL  D Y  + L    A      +E A  +F ++P 
Sbjct: 132 VIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYA--KIGCIESAEMVFREMPV 189

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            +L +WN++I  Y S  +  +S   F ++  +     + F+   ++ A +     R G+ 
Sbjct: 190 RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKL-DRFSVIGILGACSLEGFLRNGKE 248

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF-VQGG 219
           IH  +++S  E D+ +  SL+  YA CG +  A  +F  I  K +V+WN+MI G+ +   
Sbjct: 249 IHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQ 308

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
            FE    + +  E   + PD +TM+ +L  C                             
Sbjct: 309 SFESFAYVRKMQEGGKLHPDWITMINLLPPC----------------------------- 339

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
                        AQL A+ +G  +H    + G   +  L T+L+DMY +CG L  A  +
Sbjct: 340 -------------AQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECL 386

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399
           F  +  R++  W+ MIA +   G  R+A+ LF  +    +KP+A T  ++L A +    +
Sbjct: 387 FGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASL 446

Query: 400 DEGRMFFNQMEPVYGVVPGVKHYT------CMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
            E        E ++G V  +K  +       +V M G+ G L  A E  ++M      S 
Sbjct: 447 REA-------EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVIS- 498

Query: 454 WGALLGACKIH 464
           W  ++ A  IH
Sbjct: 499 WNTVIMAYAIH 509



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 117/277 (42%), Gaps = 44/277 (15%)

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           Y   G +  A  +F  + + D   WN MI GFV  G F  A++ Y  ME           
Sbjct: 70  YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRME----------- 118

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
                         FG                  V  D FT+  V+ AC  L  +  G +
Sbjct: 119 --------------FG-----------------GVRGDNFTYPFVIKACGGLYDLAEGER 147

Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
           +H K+ K G+ L+ Y+  SLI MY K G ++ A  VF  +  RD+  W++MI+G+   G 
Sbjct: 148 VHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGD 207

Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
           G  +L  F  MQ + +K +  +   +L ACS  G +  G+    QM     +   V   T
Sbjct: 208 GWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSR-LELDVMVQT 266

Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            +VDM  + G +D A    +++        W A++G 
Sbjct: 267 SLVDMYAKCGRMDYAERLFDQIT-DKSIVAWNAMIGG 302



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           ++ N    T  +  Y + G +  AL++F  ++  D F+W+ MI GF   G   +A+D + 
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVD--EGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           RM+   V+ +  T+  V+ AC   GL D  EG     ++    G+   +     ++ M  
Sbjct: 116 RMEFGGVRGDNFTYPFVIKAC--GGLYDLAEGERVHGKVIKS-GLDLDIYIGNSLIIMYA 172

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           + G ++ A     +MP+    S W +++  
Sbjct: 173 KIGCIESAEMVFREMPVRDLVS-WNSMISG 201


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 313/566 (55%), Gaps = 45/566 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P   L TWN +I          +   +F ++ +   + P+E+T   V   +A
Sbjct: 44  ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM-HGLGFSPDEYTLGSVFSGSA 102

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    +GQ IHG  IK   E DL +++SL H Y   G L     V   +  +++V+WN+
Sbjct: 103 GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNT 162

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I G  Q G  E  + LY+ M+              +S C                    
Sbjct: 163 LIMGNAQNGCPETVLYLYKMMK--------------ISGC-------------------- 188

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                    P++ TFV+VLS+C+ L     G QIHA+  K G      + +SLI MY+KC
Sbjct: 189 --------RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNV 389
           G L  A + F   +  D  +WS+MI+ +  +G G EA++LF+ M E   ++ N V F N+
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 300

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL D+G   F+ M   YG  PG+KHYTC+VD+LGRAG LD+A   I  MPI  
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 360

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  LL AC IH+N E+A+     +L+++P +    VLL+N++A   +W +VSE+RK
Sbjct: 361 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR   +KKE G S  E  GE+H+F  G+ S    KEIYS L E+   +K  GY P+ + 
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  ++EE+ +E  L  HSE+LA+A+ L+ +    PIRI+KNLRVC DCH   K IS + 
Sbjct: 481 VLHDMDEEE-KESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIK 539

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI LRD  RFHHF  G CSC DYW
Sbjct: 540 NREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 42/322 (13%)

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  Y+  GD   A  V+  + KK+ +S N +I+G+V+ G    A +++ EM      PD 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEM------PDR 54

Query: 241 --VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM 298
              T  A+++   +    EF     E LS+F E+      +PDE+T  SV S  A L ++
Sbjct: 55  KLTTWNAMIAGLIQ---FEFNE---EGLSLFREMH-GLGFSPDEYTLGSVFSGSAGLRSV 107

Query: 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGF 358
            IG QIH    K G++L+  + +SL  MY + G L     V  ++  R++  W+T+I G 
Sbjct: 108 SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGN 167

Query: 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
           A  GC    L L+  M+ +  +PN +TF  VL +CS   +  +G+    +   + G    
Sbjct: 168 AQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI-GASSV 226

Query: 419 VKHYTCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVWGALLGACKIH------------- 464
           V   + ++ M  + G L D A  F E+        +W +++ A   H             
Sbjct: 227 VAVVSSLISMYSKCGCLGDAAKAFSERED--EDEVMWSSMISAYGFHGQGDEAIELFNTM 284

Query: 465 ---ENVELAE-------YACSH 476
               N+E+ E       YACSH
Sbjct: 285 AEQTNMEINEVAFLNLLYACSH 306


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/500 (42%), Positives = 301/500 (60%), Gaps = 11/500 (2%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYC 195
           P+   +   + + AR         +H    K  F      +   L+H YA+CG L  A  
Sbjct: 76  PDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRLVHAYAVCGMLPHARR 135

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF      D+V+WN ++ G+ Q G      +L R+        D V+   VLS C    +
Sbjct: 136 VFDGGTDNDMVAWNCLLRGYAQEG---GDADLLRDFFARMPSRDSVSWNTVLSLCVVNGE 192

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
            +      EA+++F E+  S+   PD  T VSV+SA A LGA+  G+  HA + ++G+++
Sbjct: 193 YD------EAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEV 246

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMYGCGREALDLFSRM 374
              L+++LI+MY+KCG L+ A+ VF  V+  R +  W+ M+AGF   GC   AL LF+RM
Sbjct: 247 EEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRALALFTRM 306

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +   + PN +TF  +L ACSH GLV+EG   F +M  VYG+ P + HY CMVD+  RAG+
Sbjct: 307 ETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGM 366

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
            ++A E I+ MP+ P AS+  ALLGAC+ H+N+EL + A   L+E  P +H   VLLSNI
Sbjct: 367 FEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSNI 426

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
           YA  G W  V ++RK M   G+ K PG SS+E+NG IH+F++G+ SH   ++IY  LDEI
Sbjct: 427 YALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLDEI 486

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
             +LKS GY P+ S +L  +++EDV+E +L +HSE+LAIA+GLIS  P  PIR+V NLR+
Sbjct: 487 CQQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNNLRI 546

Query: 615 CGDCHTVAKLISKLYNREIL 634
           CGDCH   KL+SK+Y R  L
Sbjct: 547 CGDCHNAIKLLSKIYGRNPL 566



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 7/191 (3%)

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           R+ F ++P  +  +WNT++     + E  ++  +F +++ +    P+  T   V+ A A 
Sbjct: 166 RDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAY 225

Query: 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNS 210
           L     G   H  VI+   E +  +S++LI+ Y+ CG L  A  VF  + GK+ + +WN+
Sbjct: 226 LGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNA 285

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           M++GF   G   +A+ L+  ME   + P+++T   +L+AC+       G    E +  F 
Sbjct: 286 MLAGFTANGCSGRALALFTRMETTGLMPNKITFNCILNACS------HGGLVEEGMRCFQ 339

Query: 271 ELQLSKNVNPD 281
            +     + PD
Sbjct: 340 RMSRVYGIEPD 350



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 20/222 (9%)

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG-IKLNCYLT 320
           P+ AL +F  L L    +PD   +   L++CA+        Q+HA   K+G +  +  + 
Sbjct: 59  PHLALRLFDHL-LRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVR 117

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL-DLFSRMQEAKV 379
             L+  Y  CG L  A  VF      D+  W+ ++ G+A  G   + L D F+RM     
Sbjct: 118 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSR-- 175

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQM------EP----VYGVVPGVKHYTCMVDML 429
             ++V++  VL  C  +G  DE    F +M      +P    +  VV  + +   +   L
Sbjct: 176 --DSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGL 233

Query: 430 -GRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVE 468
              A ++ + VE  EK+   ++   S  G L GA  + +NV 
Sbjct: 234 WAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVR 275


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/712 (33%), Positives = 365/712 (51%), Gaps = 107/712 (15%)

Query: 3    DNPPQHMETLSTPVISLPRHPNPTTLTVN-------NGHQHHPHPVFSLIKQC---KNIK 52
            D  PQ      T +IS       + +  N        G   + + + S++K C    N++
Sbjct: 348  DEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQ 407

Query: 53   QLKQIHTQMLRTGLFFDPY---SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
              K +H  MLR G+  D     S   L+  C +      EYA  +F+ + + ++ +WN +
Sbjct: 408  LGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKV-----FEYAERLFELMNEGDVVSWNIM 462

Query: 110  IRAYSSSAEPIQSFMIFLQLVYNSPYFPN---------------------------EF-- 140
            I AY  + +  +S  +F +L Y      N                           EF  
Sbjct: 463  IGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSA 522

Query: 141  -TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
             TF   +  A+ L    +G+ +HGMV+K  F+ D FI +SL+  Y  CG +  A  +   
Sbjct: 523  VTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRD 582

Query: 200  IG----------------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
            +                 K  +VSW SM+SG+V  G +E  ++ +R M  E        +
Sbjct: 583  VPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRE--------L 634

Query: 244  VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
            V V                                  D  T  +++SACA  G ++ G  
Sbjct: 635  VVV----------------------------------DIRTVTTIISACANAGILEFGRH 660

Query: 304  IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
            +HA ++K G +++ Y+ +SLIDMY+K G+LD A  VF      ++ +W++MI+G+A++G 
Sbjct: 661  VHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQ 720

Query: 364  GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
            G  A+ LF  M    + PN VTF  VL ACSH+GL++EG  +F  M+  Y + PGV+H T
Sbjct: 721  GMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCT 780

Query: 424  CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
             MVD+ GRAG L +   FI K  I    SVW + L +C++H+NVE+ ++    LL++ P 
Sbjct: 781  SMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPS 840

Query: 484  NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
            + GA VLLSN+ A   +WD  + +R  M   G+KK+PG S I++  +IH F+ G+ SHP 
Sbjct: 841  DPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQ 900

Query: 544  CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPS 603
              EIYS LD ++ RLK  GY  +   ++Q VEEE   E  ++ HSE+LA+ +G+I+    
Sbjct: 901  DDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQ-GEVLISHHSEKLAVVFGIINTANR 959

Query: 604  QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             PIRI+KNLR+C DCH   K  S+L +REI++RD +RFHHF+ G+CSC DYW
Sbjct: 960  TPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 205/433 (47%), Gaps = 44/433 (10%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L  +H   ++ G       A+ L T  A    +++ +A+++FD+IPQ N  TW  LI  +
Sbjct: 308 LGTLHALYVKNGSLQTLNPANHLLTLYA--KSNNMAHAQKLFDEIPQRNTQTWTILISGF 365

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           + +      F +F ++       PN++T   V+K  +     ++G+ +H  ++++  + D
Sbjct: 366 ARAGSSEMVFNLFREMQAKGA-CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVD 424

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + + NS++  Y  C     A  +F ++ + DVVSWN MI  +++ G  EK+++++R +  
Sbjct: 425 VVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPY 484

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           ++V      +  +L    ++  LE          ++  ++     +   F+   +L+  +
Sbjct: 485 KDVVSWNTIVDGLLQCGYERHALE---------QLYCMVECGTEFSAVTFSIALILA--S 533

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA--------LEVFHTVKS 345
            L  +++G Q+H  + K G   + ++ +SL++MY KCG +DKA        L+V     +
Sbjct: 534 SLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNA 593

Query: 346 R--------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
           R         +  W +M++G+   G   + L  F  M    V  +  T T ++ AC+++G
Sbjct: 594 RVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHY------TCMVDMLGRAGLLDEAVEFIEKMPIVPGA 451
           +++ GR        V+  V  + H       + ++DM  ++G LD+A   + +    P  
Sbjct: 654 ILEFGR-------HVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDA-WMVFRQSNEPNI 705

Query: 452 SVWGALLGACKIH 464
            +W +++    +H
Sbjct: 706 VMWTSMISGYALH 718


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/703 (34%), Positives = 372/703 (52%), Gaps = 79/703 (11%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
           L R P P   T  +        + SL++ C     L++   ++L   L     +A+  F 
Sbjct: 9   LWRPPAPDAATTVH--------LASLLQSCGRAGDLRR--GRLLHARLVLSGAAAASTFL 58

Query: 79  PCALGTFSS----LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
              L T  S    L  A  +F  +P+ N  +W TL+   S +     +   F  +   + 
Sbjct: 59  ANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAM-RRAG 117

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
             P  F      +AAA L     G  +H + ++  F+ +LF++++L   Y+ CG L+ A 
Sbjct: 118 VAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEAC 177

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSA---- 249
            VF  + +KD V+W +MI G+ + G  E A+  +R+M+ E  V  D+    +VLSA    
Sbjct: 178 RVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGL 237

Query: 250 -----------CAKKRDLEF-----------------------------GRWP------- 262
                      C  K   E                              G W        
Sbjct: 238 KDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSM 297

Query: 263 ----------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
                      EAL I+ EL+  + V P+EFTF S++  CA    ++ G Q+HA++ K  
Sbjct: 298 IDGYIETDCVEEALVIYVELR-RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTD 356

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           +  + ++ ++L+DMY KCG +  ++++F+ ++ R    W+ +I  FA +G GREA+  F 
Sbjct: 357 LIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFD 416

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432
           RM  + ++PN + F ++L ACSH+GLVDEG  +F  M+  +G+ P  +HY+C++D  GRA
Sbjct: 417 RMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRA 476

Query: 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
           G LDEA +FI +MPI P A  W +LLGAC++  + EL E A  +L++LEP N G  V LS
Sbjct: 477 GRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLS 536

Query: 493 NIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
            IYA  G+W++V  +RK MR S +KK PG S ++ N + H F + + SHP  K+IY KL+
Sbjct: 537 GIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLE 596

Query: 553 EIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNL 612
           E+  R+K  GY+P+ S  L    E+  +E+ L  HSER+A+A+ LIS+  ++PI + KNL
Sbjct: 597 ELTTRIKEEGYIPDTS-FLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNL 655

Query: 613 RVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           R+C DCHT  K I K+  R+I++RD  RFHHF  G CSC DYW
Sbjct: 656 RICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 313/566 (55%), Gaps = 45/566 (7%)

Query: 91  AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
           AR++FD++P   L TWN +I          +   +F ++ +   + P+E+T   V   +A
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM-HGLGFSPDEYTLGSVFSGSA 187

Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
            L    +GQ IHG  IK   E DL +++SL H Y   G L     V   +  +++V+WN+
Sbjct: 188 GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNT 247

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           +I G  Q G  E  + LY+ M+              +S C                    
Sbjct: 248 LIMGNAQNGCPETVLYLYKMMK--------------ISGC-------------------- 273

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
                    P++ TFV+VLS+C+ L     G QIHA+  K G      + +SLI MY+KC
Sbjct: 274 --------RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 325

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNV 389
           G L  A + F   +  D  +WS+MI+ +  +G G EA++LF+ M E   ++ N V F N+
Sbjct: 326 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 385

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSHSGL D+G   F+ M   YG  PG+KHYTC+VD+LGRAG LD+A   I  MPI  
Sbjct: 386 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 445

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W  LL AC IH+N E+A+     +L+++P +    VLL+N++A   +W +VSE+RK
Sbjct: 446 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 505

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            MR   +KKE G S  E  GE+H+F  G+ S    KEIYS L E+   +K  GY P+ + 
Sbjct: 506 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 565

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           +L  ++EE+ +E  L  HSE+LA+A+ L+ +    PIRI+KNLRVC DCH   K IS + 
Sbjct: 566 VLHDMDEEE-KESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIK 624

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
           NREI LRD  RFHHF  G CSC DYW
Sbjct: 625 NREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 182/438 (41%), Gaps = 85/438 (19%)

Query: 66  LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           L  DP  A+ + T C+ G        RE F +  + N++T  +L   +  S    QS   
Sbjct: 12  LSVDP--ATAIATLCSKGNL------REAFQRF-RLNIFTNTSLFTPFIQSCTTRQSLPS 62

Query: 126 FLQL---VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             QL   +  S +  ++F    ++   ++L  F    A++G + K ++      SN LI+
Sbjct: 63  GKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY----MSSNILIN 118

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            Y   GDL  A  VF  +  + + +WN+MI+G +Q  F E+ + L+REM      PDE T
Sbjct: 119 GYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYT 178

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
           + +V S  A  R                                          ++ IG 
Sbjct: 179 LGSVFSGSAGLR------------------------------------------SVSIGQ 196

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           QIH    K G++L+  + +SL  MY + G L     V  ++  R++  W+T+I G A  G
Sbjct: 197 QIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNG 256

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
           C    L L+  M+ +  +PN +TF  VL +CS   +  +G+    +   + G    V   
Sbjct: 257 CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI-GASSVVAVV 315

Query: 423 TCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVWGALLGACKIH----------------E 465
           + ++ M  + G L D A  F E+        +W +++ A   H                 
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSERED--EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQT 373

Query: 466 NVELAE-------YACSH 476
           N+E+ E       YACSH
Sbjct: 374 NMEINEVAFLNLLYACSH 391


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/631 (35%), Positives = 352/631 (55%), Gaps = 72/631 (11%)

Query: 41   VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYARE---M 94
            + S +  C ++  +   +Q+H + L+ GL  D   ++ L     L  +    Y +E    
Sbjct: 493  MISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNAL-----LALYGECGYVKECQKA 547

Query: 95   FDQIPQPNLYTWNTLIRAYSSSA----EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
            F  +   +  +WN+LI A + S     E ++SF++ ++  ++    PN  TF  ++ A +
Sbjct: 548  FSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWD----PNRVTFITILAAVS 603

Query: 151  RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV---MIGKKDVVS 207
             L    +G+ IH +V+K +   D  I N+L+  Y  CGD  M YC  +   M  ++D VS
Sbjct: 604  SLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGD--MGYCENIFSRMSDRQDEVS 661

Query: 208  WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            WNSMISG++      KA+++                                 W      
Sbjct: 662  WNSMISGYIHNELLPKAMDMV--------------------------------W------ 683

Query: 268  IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                  + K    D FTF +VLSACA +  ++ G+++H    +  ++ +  + ++L+DMY
Sbjct: 684  ----FMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMY 739

Query: 328  TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
             KCG +D A   F  + +R+++ W++MI+G+A +G G ++LDLF++M+     P+ VTF 
Sbjct: 740  AKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFV 799

Query: 388  NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
             VL ACSH+GLV+EG   F+ M  +YG+ P ++H++CMVD+LGR G L++  +F+ +MP+
Sbjct: 800  GVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPV 859

Query: 448  VPGASVWGALLGAC--KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
             P   +W  +LGAC      N  L   A   LLE+EP N    +LLSN+YA  GKWD+V+
Sbjct: 860  KPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVA 919

Query: 506  ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            + R  MR + +KKE GCS + +   +H F+AG+ SHP    IY KL E+  +++  GY+P
Sbjct: 920  KTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIP 979

Query: 566  NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ-PIRIVKNLRVCGDCHTVAKL 624
                 L  +E E  +E+ L+ HSE++A+A+ L    PS+ PIRI+KNLRVCGDCH+  K 
Sbjct: 980  ETRFALYDLEGES-KEELLSYHSEKIAVAFVL--TRPSKMPIRILKNLRVCGDCHSAFKY 1036

Query: 625  ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IS++  R+I+LRD  RFHHF  G CSC D+W
Sbjct: 1037 ISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 158/354 (44%), Gaps = 48/354 (13%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           L+Q+ T++ ++G   D Y  S L +        S+ YA+ +F ++   N+ + N LI   
Sbjct: 303 LEQLLTRVEKSGFLHDLYVGSALVS--GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGL 360

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF--RVGQAIHGMVIKSSFE 171
                  ++  +F+++  +    PN +           +++   R G  +H  +I+S   
Sbjct: 361 VRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLL 420

Query: 172 D-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           +  + I N LI+ YA CG +  A  VF ++  KD V+WNSMI+G  Q   F         
Sbjct: 421 NAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFL-------- 472

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                            EA+  F E++ ++ + P  FT +S LS
Sbjct: 473 ---------------------------------EAVKTFQEMRRTE-LYPSNFTMISALS 498

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           +CA LG + +G Q+H +  K G+ L+  ++ +L+ +Y +CG + +  + F  +   D   
Sbjct: 499 SCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVS 558

Query: 351 WSTMIAGFAMYGCGR-EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           W+++I   A       EA++ F  M  A   PN VTF  +L A S   L + G+
Sbjct: 559 WNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGK 612



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 159/338 (47%), Gaps = 47/338 (13%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           K  +++H Q+ + G   D +  + L    A      L   R++FD++P  NL +W+ LI 
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYA--RVGDLGSGRKVFDEMPLRNLVSWSCLIS 147

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF--RVGQAIHGMVIKSS 169
            Y+ +  P ++  +F ++V +  + PN + F  VI+A     ++  + G  IHG++ K+ 
Sbjct: 148 GYTRNRMPNEACELFRKMVSDG-FMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQ 206

Query: 170 FEDDLFISNSLIHFYA-ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
           + +D+  SN LI  Y    G +  A   F  I  +++VS NSMIS + Q G    A +++
Sbjct: 207 YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIF 266

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
             M+ E V  D                   G  PNE                  +TF S+
Sbjct: 267 STMQKE-VMGD-------------------GLKPNE------------------YTFGSL 288

Query: 289 LSACAQLGAMDIGV--QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
           +SA   L    + +  Q+  +++K G   + Y+ ++L+  + K G++  A  +F  +  R
Sbjct: 289 ISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYR 348

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVKPNA 383
           +V   + +I G      G EA++LF  M+++ ++ PN+
Sbjct: 349 NVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS 386



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 63/390 (16%)

Query: 98  IPQPNLY--TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           IP  + Y   +N        S+ P+Q   + + L  +S    N       I++ A+  ++
Sbjct: 29  IPHSHHYPLLFNPFTNPLPPSSIPLQ---VLVDLYKSSQLHHNPVQHDEKIESLAQRYRY 85

Query: 156 RVG----QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM 211
             G    + +H  + K+ F +DLF+ N+LI+ YA  GDL     VF  +  +++VSW+ +
Sbjct: 86  SCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCL 145

Query: 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271
           ISG+ +                                          R PNEA  +F +
Sbjct: 146 ISGYTRN-----------------------------------------RMPNEACELFRK 164

Query: 272 LQLSKNVNPDEFTFVSVLSACAQLG--AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           + +S    P+ + F SV+ AC + G   +  G+QIH  M K     +   +  LI MY  
Sbjct: 165 M-VSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGN 223

Query: 330 C-GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA----KVKPNAV 384
             G +D A   F ++  R++   ++MI+ +   G    A D+FS MQ+      +KPN  
Sbjct: 224 ALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEY 283

Query: 385 TFTNVL---CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           TF +++   C+ ++SGLV   ++   ++E   G +  +   + +V    +AG +  A   
Sbjct: 284 TFGSLISATCSLANSGLVLLEQL-LTRVEKS-GFLHDLYVGSALVSGFAKAGSIGYAKNI 341

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAE 471
            +KM      S+ G ++G  +     E  E
Sbjct: 342 FQKMSYRNVVSLNGLIIGLVRQKRGEEAVE 371


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/593 (37%), Positives = 340/593 (57%), Gaps = 52/593 (8%)

Query: 67  FFDPYSASKLFTPCALGT----FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
            FD      + T  A+ T       LE AR  FD +P+ ++ +WN ++  Y+ +    ++
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 244

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F ++V N+   P+E T+  VI A +      +  ++   + +   + + F+  +L+ 
Sbjct: 245 LRLFDEMV-NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLD 303

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            YA  GDL  A  +F  +  ++VV+WNSMI+G+ Q G    AIEL               
Sbjct: 304 MYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL--------------- 348

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
                                     F E+  +K + PDE T VSV+SAC  LGA+++G 
Sbjct: 349 --------------------------FKEMITAKKLTPDEVTMVSVISACGHLGALELGN 382

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            +   + +  IKL+     ++I MY++CG+++ A  VF  + +RDV  ++T+I+GFA +G
Sbjct: 383 WVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHG 442

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            G EA++L S M+E  ++P+ VTF  VL ACSH+GL++EGR  F  ++      P + HY
Sbjct: 443 HGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHY 497

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
            CMVD+LGR G L++A   +E+MP+ P A V+G+LL A +IH+ VEL E A + L ELEP
Sbjct: 498 ACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEP 557

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
           +N G  +LLSNIYA  G+W +V  +R+ M+  G+KK  G S +E  G++HKF+  + SH 
Sbjct: 558 DNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHE 617

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
              +IY  L E+  +++  GY+ ++S +L+ VEEE  +E+ +  HSE+LAI Y L+  E 
Sbjct: 618 RSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEE-EKEEIVGTHSEKLAICYALLVSEA 676

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              IR+VKNLRVC DCHT  K+ISKL  R I++RD  RFH F  G CSC DYW
Sbjct: 677 GAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 212/434 (48%), Gaps = 47/434 (10%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           S+  +  N   L+Q+H Q++   L    Y  + L   C     +   Y   +F+    PN
Sbjct: 6   SIASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTR-LRAPPHYTHLLFNSTLNPN 64

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           ++ + +++R YS   +  +  +++ Q+       P+ F +P +IK+A        G   H
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMYEQM-QGCGVRPDAFVYPILIKSAGT-----GGIGFH 118

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--KKDVVSWNSMISGFVQGGF 220
             V+K     D F+ N++I  YA  G +  A  VF  I   ++ V  WN+M+SG+ +   
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR-------------W------ 261
             +A  L+  M   NV    +T  A+++  AK +DLE  R             W      
Sbjct: 179 EGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSG 234

Query: 262 ------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                   EAL +F E+ ++  + PDE T+V+V+SAC+  G   +   +   + ++ I+L
Sbjct: 235 YAQNGLAEEALRLFDEM-VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQL 293

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           NC++ T+L+DMY K G+LD A ++F+T+  R+V  W++MIAG+A  G    A++LF  M 
Sbjct: 294 NCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 353

Query: 376 EA-KVKPNAVTFTNVLCACSHSGLVDEGRM---FFNQMEPVYGVVPGVKHYTCMVDMLGR 431
            A K+ P+ VT  +V+ AC H G ++ G     F  + +    +   +  +  M+ M  R
Sbjct: 354 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ----IKLSISGHNAMIFMYSR 409

Query: 432 AGLLDEAVEFIEKM 445
            G +++A    ++M
Sbjct: 410 CGSMEDAKRVFQEM 423



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V PD F +  +L   A  G    G+  HA + K G   + ++  ++IDMY + G +  A 
Sbjct: 96  VRPDAFVY-PILIKSAGTG----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHAR 150

Query: 338 EVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +VF  +    R V  W+ M++G+  +    +A  LF  M E     N +T+T ++   + 
Sbjct: 151 KVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE----RNVITWTAMVTGYAK 206

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGAS 452
              ++  R +F+ M P   VV     +  M+    + GL +EA+   ++M    I P  +
Sbjct: 207 VKDLEAARRYFDCM-PERSVVS----WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDET 261

Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPE-NHGALVLLSNIYAKTGKWDNVSEL 507
            W  ++ AC    +  LA      L +   + N      L ++YAK G  D+  +L
Sbjct: 262 TWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKL 317


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 334/571 (58%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A  +F+ +P  ++ +WN +I  Y+ +    ++  +F ++++ S   P+EFT   V+ 
Sbjct: 246 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
           A A L   R+G+ +H  ++++    +  ++N+LI  YA  G +  A  +     + D  V
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+ +++ G+V+ G  E A E++  M   +V    V   A++    +      GR  +EA
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDV----VAWTAMIVGYEQN-----GR-NDEA 415

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + ++    P+ +T  +VLS CA L  +D G QIH +  +  ++ +  ++ ++I 
Sbjct: 416 IDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIIT 474

Query: 326 MYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY + G+   A  +F  V  R +   W++MI   A +G G EA+ LF  M  A V+P+ +
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 534

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL ACSH+G V+EG+ +++Q++  + + P + HY CMVD+L RAGL  EA EFI +
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A  WG+LL AC++H+N ELAE A   LL ++P N GA   ++N+Y+  G+W + 
Sbjct: 595 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 654

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + + K  +   ++KE G S   +  +IH F A +  HP    +Y+    +   +K  G+V
Sbjct: 655 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  V++E ++E+ L+ HSE+LAIA+GLIS      +R++KNLRVC DCH   K 
Sbjct: 715 PDLQSVLHDVDDE-LKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 773

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI++RD  RFHHFR G CSC DYW
Sbjct: 774 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 56/299 (18%)

Query: 150 ARLVQF-------RVGQAIHGMVIKSSFEDDLFISNSLIHFYAI----CGDLAMAYCVF- 197
           ARL+Q          G+AIH   +K+      ++ N+L+ +Y       G L  A  +F 
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 198 -VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            + + +++V +WNS++S F + G    A  ++ EM   +     V +V +       R  
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGL------NRAG 143

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            FG    EA+    ++  +    P +FT  +VLS+CA   A  +G ++H+ + K G+   
Sbjct: 144 RFG----EAIKTLLDMT-ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 317 CYLTTSLIDMYTKCGN-------------------------------LDKALEVFHTVKS 345
             +  S+++MY KCG+                               +D A  +F ++  
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           R +  W+ MIAG+   G   +AL LFSRM  E+ + P+  T T+VL AC++ G V  G+
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 317



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 83/226 (36%), Gaps = 43/226 (19%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT------------------------ 320
           +  +L  C        G  IHA+  K G+  + YL                         
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 321 -------------TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
                         SL+ M+ K G L  A  VF  +  RD   W+ M+ G    G   EA
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 368 LDLFSRMQEAKVKPNAVTFTNVL--CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           +     M      P   T TNVL  CA + +G V  GR   + +  + G+   V     +
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVHSFVVKL-GLGSCVPVANSV 205

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
           ++M G+ G  + A    E+MP V   S W A++        ++LAE
Sbjct: 206 LNMYGKCGDSETATTVFERMP-VRSVSSWNAMVSLNTHLGRMDLAE 250


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/694 (33%), Positives = 365/694 (52%), Gaps = 79/694 (11%)

Query: 23  PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTG---LFFDPYSASKLFTP 79
           PNP T +           V S++     +   + +H Q ++ G     F   S   ++  
Sbjct: 155 PNPFTFS----------SVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAK 204

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C L     +E AR +F ++   ++ +WNTL+     +   +++  +F     +S     E
Sbjct: 205 CGL-----VEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHD-SRSSITMLTE 258

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T+  VI   A L    + + +H  V+K  F     +  +L+  Y   G L  A  VF++
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLL 318

Query: 200 I-GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT---------------- 242
           + G ++VVSW +MI G +Q G    A  L+  M  + V P+++T                
Sbjct: 319 MSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQI 378

Query: 243 -------------------MVAVLSACAKKRDLEFGR---------WP------------ 262
                              MV+    C+ +  L   +         W             
Sbjct: 379 HAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDC 438

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTT 321
           N A + F ++ +   + P+EFT  S + ACA   A +D+G Q HA   K        +++
Sbjct: 439 NGATNAFIKMTM-HGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSS 497

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+ MY + G+++ A  VF     RD+  W++M++G+A +G  ++ALD+F +M+   +  
Sbjct: 498 ALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDM 557

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + +TF +V+  C+H+GLV+EG+ +F+ M   YG+ P + HY CMVD+  RAG LDE +  
Sbjct: 558 DGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSL 617

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           IE MP   G ++W ALLGAC++H+NVEL + A   LL LEP +    VLLSNIY+  GKW
Sbjct: 618 IEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKW 677

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
               E+RK M    ++KE GCS I++  ++H F+A + SHPL ++IY+KL  + A+LK  
Sbjct: 678 KEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQE 737

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GY P+ S +   V  ED +E  L +HSERLA+A+GLI+  P+ P+ I KNLRV GD HTV
Sbjct: 738 GYCPDTSFVPHDV-AEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTV 796

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            K++S++ +REI++RD  RFHHF+ G CSC D+W
Sbjct: 797 MKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 155/354 (43%), Gaps = 48/354 (13%)

Query: 41  VFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           +  +IK C ++      KQ+H   +R G                +   S L+  R++F+ 
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLD-GRKVFEG 116

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           + + N+ TW +L+  Y  +   +    +F ++     + PN FTF  V+   A      +
Sbjct: 117 MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW-PNPFTFSSVLSMVASQGMVDL 175

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           GQ +H   IK      +F+ NSL++ YA CG +  A  VF  +  +D+VSWN++++G V 
Sbjct: 176 GQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVL 235

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G   +A++L+ +         E T   V++ CA  + L   R                 
Sbjct: 236 NGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLAR----------------- 278

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                                    Q+H+ + K G      + T+L+D Y K G LDKAL
Sbjct: 279 -------------------------QLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 338 EVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           +VF  +  S++V  W+ MI G    G    A  LFSRM+E  V PN +T++ +L
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 52/340 (15%)

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           +IK    +    +G+ +H + ++   +  D+ +  SL+  Y     +     VF  + K+
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           +VV+W S+++G++Q G     + L+  M  E V                        WPN
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGV------------------------WPN 156

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
                              FTF SVLS  A  G +D+G  +HA+  K G     ++  SL
Sbjct: 157 P------------------FTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSL 198

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           ++MY KCG +++A  VF  +++RD+  W+T++AG  + G   EAL LF   + +      
Sbjct: 199 MNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTE 258

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEP----VYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
            T++ V+  C++   +   R   + +       YG V      T ++D   +AG LD+A+
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNV-----MTALMDAYNKAGQLDKAL 313

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479
           +    M        W A++  C  + ++ LA    S + E
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTV 343
            + ++  C  +    +G Q+HA   + G    +  + TSL+DMY    ++    +VF  +
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             R+V  W++++ G+   G   + + LF RM+   V PN  TF++VL   +  G+VD G+
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ 177

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
               Q    +G    V     +++M  + GL++EA
Sbjct: 178 HVHAQ-SIKFGCCSTVFVCNSLMNMYAKCGLVEEA 211


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 334/571 (58%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A  +F+ +P  ++ +WN +I  Y+ +    ++  +F ++++ S   P+EFT   V+ 
Sbjct: 140 MDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 199

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
           A A L   R+G+ +H  ++++    +  ++N+LI  YA  G +  A  +     + D  V
Sbjct: 200 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 259

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+ +++ G+V+ G  E A E++  M   +V    V   A++    +      GR  +EA
Sbjct: 260 ISFTALLEGYVKIGDMESAREMFGVMNNRDV----VAWTAMIVGYEQN-----GR-NDEA 309

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + ++    P+ +T  +VLS CA L  +D G QIH +  +  ++ +  ++ ++I 
Sbjct: 310 IDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIIT 368

Query: 326 MYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY + G+   A  +F  V  R +   W++MI   A +G G EA+ LF  M  A V+P+ +
Sbjct: 369 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 428

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL ACSH+G V+EG+ +++Q++  + + P + HY CMVD+L RAGL  EA EFI +
Sbjct: 429 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 488

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A  WG+LL AC++H+N ELAE A   LL ++P N GA   ++N+Y+  G+W + 
Sbjct: 489 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 548

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + + K  +   ++KE G S   +  +IH F A +  HP    +Y+    +   +K  G+V
Sbjct: 549 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 608

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  V++E ++E+ L+ HSE+LAIA+GLIS      +R++KNLRVC DCH   K 
Sbjct: 609 PDLQSVLHDVDDE-LKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 667

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI++RD  RFHHFR G CSC DYW
Sbjct: 668 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 12/222 (5%)

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            +A  G LA A  VF  + ++D VSW  M+ G  + G F +AI+   +M  +   P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
           +  VLS+CA  +    GR   +  S   +L L   V        SVL+   + G  +   
Sbjct: 61  LTNVLSSCAVTQAGAVGR---KVHSFVVKLGLGSCVPVAN----SVLNMYGKCGDSETAT 113

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
            +  +M  + +        +++ + T  G +D A  +F ++  R +  W+ MIAG+   G
Sbjct: 114 TVFERMPVRSVS----SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 169

Query: 363 CGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
              +AL LFSRM  E+ + P+  T T+VL AC++ G V  G+
Sbjct: 170 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 211



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           M+ K G L  A  VF  +  RD   W+ M+ G    G   EA+     M      P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 386 FTNVL--CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
            TNVL  CA + +G V  GR   + +  + G+   V     +++M G+ G  + A    E
Sbjct: 61  LTNVLSSCAVTQAGAV--GRKVHSFVVKL-GLGSCVPVANSVLNMYGKCGDSETATTVFE 117

Query: 444 KMPIVPGASVWGALLGACKIHENVELAE 471
           +MP V   S W A++        ++LAE
Sbjct: 118 RMP-VRSVSSWNAMVSLNTHLGRMDLAE 144


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/607 (34%), Positives = 344/607 (56%), Gaps = 21/607 (3%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           ++IH +++  G   D   A+ L      G   S   ARE+FD++ + ++ +WN +I  Y 
Sbjct: 227 RKIHAEIVANGFDSDLVVATALIN--MYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            + +  ++  ++ +L     +   + TF  ++ A + +     G+ +H  +++   + ++
Sbjct: 285 QNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE---KAIELYREM 231
            ++ +L++ YA CG L  A  VF  +  +D V+W+++I  +   G+ +   KA +++  +
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 232 -EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
              + +  + +    V + CA             A+ IF E+  +  + PD  TF++VL 
Sbjct: 404 GSRDTICWNAMITTYVQNGCAVA-----------AMKIFREMTGAAGLKPDAVTFIAVLE 452

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA LG +     +HA++ +  ++ N  +T +LI+MY +CG+L++A  +F   K + V  
Sbjct: 453 ACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS 512

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+A F+ YG   EALDLF  M    VKP+ VT+T++L  C+H G +++G  +F  M 
Sbjct: 513 WTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMA 572

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            ++G+ P   H+  MVD+LGR+G L +A E +E MP  P    W   L AC+IH  +EL 
Sbjct: 573 ELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELG 632

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   + EL+P +    + +SNIYA  G W+ V+ +RK M   GLKK PG S IEV+G+
Sbjct: 633 EAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGK 692

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+F +G   HP   EI  +L  +   +++ GYVP+   +L  V E + +E  L  HSE+
Sbjct: 693 LHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGE-KETMLLYHSEK 751

Query: 591 LAIAYGLISVEPS-QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG-GN 648
           +AIA+GL+S   S +PIR+VKNLRVC DCHT  K I+++  R+I+LRD  RFH F   G 
Sbjct: 752 MAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGK 811

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 812 CSCGDYW 818



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 203/405 (50%), Gaps = 21/405 (5%)

Query: 39  HPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           H  F S++  C ++ Q ++IH ++  +GL      A+ L T  A   F S+  A+ MF  
Sbjct: 110 HVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQS 167

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   +  +WN +I A+S S +   +  IF ++  +    PN  T+  VI   +       
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMK--PNSTTYINVISGFSTPEVLPE 225

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  ++ + F+ DL ++ +LI+ Y  CG    A  VF  + K+D+VSWN MI  +VQ
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G F +A+ELY++++ME  K  + T V++L AC+  + L  GR       + H   L + 
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-------LVHSHILERG 338

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG---NLD 334
           ++ +     ++++  A+ G+++   ++   MK +    +    ++LI  Y   G   +  
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR----DAVAWSTLIGAYASNGYGKDAR 394

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCAC 393
           KA +VF  + SRD   W+ MI  +   GC   A+ +F  M   A +KP+AVTF  VL AC
Sbjct: 395 KARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           +  G + E +    Q+     +   V     +++M  R G L+EA
Sbjct: 455 ASLGRLSEVKALHAQISESE-LESNVVVTNTLINMYARCGSLEEA 498



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 56/340 (16%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+  TF  V+ + +       G+A+H  +  S FE D  + N+LI  Y  C  L  A  V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 197 FVMIG--KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
           F  +   +++VVSWN+MI+ + Q G   +A+ LY  M ++ +                  
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL------------------ 106

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                     D  TFVSVL AC+ L     G +IH ++   G+ 
Sbjct: 107 ------------------------GTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLD 139

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               L  +L+ MY + G++  A  +F ++++RD   W+ +I   +  G    AL +F  M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +   +KPN+ T+ NV+   S   ++ EGR    ++    G    +   T +++M G+ G 
Sbjct: 200 K-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEI-VANGFDSDLVVATALINMYGKCGS 257

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKI-----HENVEL 469
             EA E  +KM      S W  ++G C +     HE +EL
Sbjct: 258 SHEAREVFDKMKKRDMVS-WNVMIG-CYVQNGDFHEALEL 295


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 331/593 (55%), Gaps = 68/593 (11%)

Query: 34  HQHHPHPV--FSLIKQCKNIKQLKQIHTQMLRTGLFFDPY--SASKLFTPCALGTFSSLE 89
           H  +PH +   S ++ CK+IK LKQIH  +++T    D     +++L   CA        
Sbjct: 16  HDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 75

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSA-EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
           YA  +  Q+  PNL  +N +IR  ++S  + I+  +++ Q++ +    P+ +T PFV+KA
Sbjct: 76  YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQML-SKGIVPDNYTIPFVLKA 134

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            A     R G+ +HG  IK     D+++SN+L+  YA+C  +  A  VF    ++D+VSW
Sbjct: 135 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 194

Query: 209 NSMISGFVQGGFFEKAIELYREMEME---------------------------------- 234
            +MI G+V+ GF  + + L+ EM  E                                  
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254

Query: 235 --NVKPDEVTMVAVLSACAKKRDLEFGR-------------WPN------------EALS 267
             NV  D     A++    K  D  F R             W +            E+L 
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLY 314

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F ++Q    V PD+ T V+VL++CA LG +++G  +HA + +  I+ + ++  +L+DMY
Sbjct: 315 MFRKMQ-RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMY 373

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG++D+A  VF  +  +DV+ ++ MI G AM+G G +ALDLFS M +  ++P+ VTF 
Sbjct: 374 AKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFV 433

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACSH GLV+EGR +F  M  +Y + P ++HY CMVD+LGRAGL++EA EFI  MPI
Sbjct: 434 GVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPI 493

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P A V GALLGACKIH  VEL E     + ++EP   GA VL+SNIY+   +W +  +L
Sbjct: 494 EPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKL 553

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           RK M+   L+K PGCSSIE++G IH+F  G+ SHP  KEIY  LDEI++ LK+
Sbjct: 554 RKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 606


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 334/571 (58%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           ++ A  +F+ +P  ++ +WN +I  Y+ +    ++  +F ++++ S   P+EFT   V+ 
Sbjct: 246 MDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLS 305

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--V 205
           A A L   R+G+ +H  ++++    +  ++N+LI  YA  G +  A  +     + D  V
Sbjct: 306 ACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+ +++ G+V+ G  E A E++  M   +V    V   A++    +      GR  +EA
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDV----VAWTAMIVGYEQN-----GR-NDEA 415

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + ++    P+ +T  +VLS CA L  +D G QIH +  +  ++ +  ++ ++I 
Sbjct: 416 IDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIIT 474

Query: 326 MYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           MY + G+   A  +F  V  R +   W++MI   A +G G EA+ LF  M  A V+P+ +
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRI 534

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL ACSH+G V+EG+ +++Q++  + + P + HY CMVD+L RAGL  EA EFI +
Sbjct: 535 TYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRR 594

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P A  WG+LL AC++H+N ELAE A   LL ++P N GA   ++N+Y+  G+W + 
Sbjct: 595 MPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDA 654

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + + K  +   ++KE G S   +  +IH F A +  HP    +Y+    +   +K  G+V
Sbjct: 655 ARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFV 714

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+   +L  V++E ++E+ L+ HSE+LAIA+GLIS      +R++KNLRVC DCH   K 
Sbjct: 715 PDLQSVLHDVDDE-LKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 773

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK+ +REI++RD  RFHHFR G CSC DYW
Sbjct: 774 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 56/299 (18%)

Query: 150 ARLVQF-------RVGQAIHGMVIKSSFEDDLFISNSLIHFYAI----CGDLAMAYCVF- 197
           ARL+Q          G+AIH   +K+      ++ N+L+ +Y       G L  A  +F 
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 198 -VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
            + + +++V +WNS++S F + G    A  ++ EM   +     V +V +       R  
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGL------NRAG 143

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
            FG    EA+    ++  +    P +FT  +VLS+CA   A  +G ++H+ + K G+   
Sbjct: 144 RFG----EAIKTLLDMT-ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 317 CYLTTSLIDMYTKCGN-------------------------------LDKALEVFHTVKS 345
             +  S+++MY KCG+                               +D A  +F ++  
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           R +  W+ MIAG+   G   +AL LFSRM  E+ + P+  T T+VL AC++ G V  G+
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 317



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 83/226 (36%), Gaps = 43/226 (19%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT------------------------ 320
           +  +L  C        G  IHA+  K G+  + YL                         
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 321 -------------TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
                         SL+ M+ K G L  A  VF  +  RD   W+ M+ G    G   EA
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 368 LDLFSRMQEAKVKPNAVTFTNVL--CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
           +     M      P   T TNVL  CA + +G V  GR   + +  + G+   V     +
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVHSFVVKL-GLGSCVPVANSV 205

Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
           ++M G+ G  + A    E+MP V   S W A++        ++LAE
Sbjct: 206 LNMYGKCGDAETASTVFERMP-VRSVSSWNAMVSLNTHLGRMDLAE 250


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/614 (35%), Positives = 359/614 (58%), Gaps = 35/614 (5%)

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQ 128
           D YS + L +  A      +E    +FDQ+P  +  ++NTLI  ++S+    ++  + ++
Sbjct: 88  DVYSWNTLLS--AYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVR 145

Query: 129 LVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188
           +  +  + P +++    ++A ++L+  R G+ IHG ++ +   ++ F+ N++   YA CG
Sbjct: 146 MQEDG-FQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCG 204

Query: 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           D+  A  +F  +  K+VVSWN MISG+V+ G   + I L+ EM++  +KPD VT+  VL+
Sbjct: 205 DIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLN 264

Query: 249 A---CAKKRDLE--FGRWPN--------------------EALSIFHELQLSKNVNPDEF 283
           A   C +  D    F + P                     +A  +F ++ L +NV PD +
Sbjct: 265 AYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDM-LRRNVKPDSY 323

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T  S++S+CA+L ++  G  +H K+   GI  +  ++++L+DMY KCG    A  +F T+
Sbjct: 324 TISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETM 383

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
             R+V  W+ MI G+A  G   EAL L+ RMQ+   KP+ +TF  VL AC ++ +V EG+
Sbjct: 384 PIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQ 443

Query: 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
            +F+ +   +G+ P + HY CM+ +LGR+G +D+AV+ I+ MP  P   +W  LL  C  
Sbjct: 444 KYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCA- 501

Query: 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS 523
             +++ AE A SHL EL+P N G  ++LSN+YA  G+W +V+ +R  M+    KK    S
Sbjct: 502 KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYS 561

Query: 524 SIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQA 583
            +EV  ++H+F++ +  HP   +IY +L+ +++ L+  GY P+ + +L  V EE+ + ++
Sbjct: 562 WVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEE-KFRS 620

Query: 584 LNLHSERLAIAYGLISVEPS--QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRF 641
           ++ HSE+LA+A+ LI  +P+   PIRI+KN+RVC DCH   K  S   +R I++RD  RF
Sbjct: 621 ISYHSEKLALAFALIR-KPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSNRF 679

Query: 642 HHFRGGNCSCMDYW 655
           HHF GG CSC D W
Sbjct: 680 HHFFGGKCSCNDNW 693



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 11/234 (4%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D FI N L+H YA  G L+ A  VF  + K+DV SWN+++S + + G  E    ++ +M 
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                 D V+   +++  A            +AL +   +Q      P +++ V+ L AC
Sbjct: 117 YR----DSVSYNTLIACFASNGH------SGKALKVLVRMQ-EDGFQPTQYSHVNALQAC 165

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
           +QL  +  G QIH ++    +  N ++  ++ DMY KCG++DKA  +F  +  ++V  W+
Sbjct: 166 SQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWN 225

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
            MI+G+   G   E + LF+ MQ + +KP+ VT +NVL A    G VD+ R  F
Sbjct: 226 LMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLF 279



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 33/241 (13%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D F    +L   A+ G +     +   M K+ +    Y   +L+  Y K G ++    VF
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDV----YSWNTLLSAYAKMGMVENLHVVF 112

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  RD   ++T+IA FA  G   +AL +  RMQE   +P   +  N L ACS    + 
Sbjct: 113 DQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLR 172

Query: 401 EGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
            G+    ++     VV  +   T     M DM  + G +D+A    + M I      W  
Sbjct: 173 HGKQIHGRI-----VVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGM-IDKNVVSWNL 226

Query: 457 LL-GACKIHENVELAEYACSHLLE------LEPENHGALVLLSNI---YAKTGKWDNVSE 506
           ++ G  K+    E     C HL        L+P+    LV +SN+   Y + G+ D+   
Sbjct: 227 MISGYVKMGNPNE-----CIHLFNEMQLSGLKPD----LVTVSNVLNAYFRCGRVDDARN 277

Query: 507 L 507
           L
Sbjct: 278 L 278


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/681 (34%), Positives = 376/681 (55%), Gaps = 78/681 (11%)

Query: 43  SLIKQ---CKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           SLI Q    K++  L+ +HT ++++G  +  +   KL   +  C      SL  AR++FD
Sbjct: 6   SLIAQSAHTKSLTTLRAVHTNVIKSGFSY-SFLGHKLIDGYIKCG-----SLAEARKLFD 59

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  ++ TWN++I ++ S  +  ++   +  ++      P+ +TF  + KA ++L   R
Sbjct: 60  ELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEG-VLPDAYTFSAISKAFSQLGLIR 118

Query: 157 VGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
            GQ  HG+ +    E  D F++++L+  YA    +  A+ VF  + +KDVV + ++I G+
Sbjct: 119 HGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGY 178

Query: 216 VQGGFFEKAIELYREM--------------------------------------EMENVK 237
            Q G   +A++++ +M                                       +E+V 
Sbjct: 179 AQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVV 238

Query: 238 PDEVTMVAVLSACAKKRD-------LEFGR---WPN------------EALSIFHELQLS 275
             + +++ + S C    D       L++     W +             A+SIF E+ + 
Sbjct: 239 ASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREM-IR 297

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            +++P+ FT  S+L AC+ L  +++G QIHA   K G+  N Y   +LI++Y KCGN+DK
Sbjct: 298 CSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDK 357

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF  +   DV   ++MI  +A  G G EAL+LF R++   + PN VTF ++L AC++
Sbjct: 358 ARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNN 417

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG   F  +   + +   + H+TCM+D+LGR+  L+EA   IE++   P   +W 
Sbjct: 418 AGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWR 476

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            LL +CKIH  VE+AE   S +LEL P + G  +LL+N+YA  GKW+ V E++  +R   
Sbjct: 477 TLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLK 536

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           LKK P  S ++V+ E+H F+AG+ SHP   EI+  L  ++ ++K+ GY PN   +LQ ++
Sbjct: 537 LKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLD 596

Query: 576 EEDVQEQALNLHSERLAIAYGLI-SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREIL 634
           EE  +  +L  HSE+LAIAY L  ++  +  IRI KNLRVCGDCH+  K +S L  R+I+
Sbjct: 597 EEK-KISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDII 655

Query: 635 LRDRYRFHHFRGGNCSCMDYW 655
            RD  RFHHF+GG CSC DYW
Sbjct: 656 ARDSKRFHHFKGGLCSCKDYW 676



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 161/351 (45%), Gaps = 49/351 (13%)

Query: 30  VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFS 86
           VN G + + + +  ++  C N+  L   + IH  ++++GL     S + L T  +    +
Sbjct: 195 VNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYS--RCN 252

Query: 87  SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146
            +E + ++F+Q+   N  TW + +     +     +  IF +++  S   PN FT   ++
Sbjct: 253 MIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSIS-PNPFTLSSIL 311

Query: 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV 206
           +A + L    VG+ IH + +K   + + +   +LI+ Y  CG++  A  VF ++ + DVV
Sbjct: 312 QACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVV 371

Query: 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266
           + NSMI  + Q GF  +A+EL+  ++   + P+ VT +++L AC            N A 
Sbjct: 372 AINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLAC------------NNA- 418

Query: 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK-KQGIKLNCYLTTSLID 325
                                        G ++ G QI A ++    I+L     T +ID
Sbjct: 419 -----------------------------GLVEEGCQIFASIRNNHNIELTIDHFTCMID 449

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           +  +   L++A  +   V++ DV +W T++    ++G    A  + S++ E
Sbjct: 450 LLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILE 500



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + S+++  A   ++     +H  + K G   + +L   LID Y KCG+L +A ++F  + 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
           SR +  W++MI+    +G  +EA++ +  M    V P+A TF+ +  A S  GL+  G+
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQ 121


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 312/533 (58%), Gaps = 51/533 (9%)

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E DLF  N ++  Y    DL  A  +F  + ++D+VSWN+M+SG+ Q GF ++A E++ +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 231 MEMEN-----------VKPDEV-------------TMVA---VLSACAKKRDLEFGRWPN 263
           M ++N           V+   +             T+V+   ++    +KR   F   P 
Sbjct: 83  MPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQ 142

Query: 264 --------------------EALSIFHELQLS-KNVNPDEFTFVSVLSACAQLGAMDIGV 302
                               EAL  F E+Q   + +N   FT    LS C+ + A+++G 
Sbjct: 143 RDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFT--CALSTCSNIAALELGR 200

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           Q+H ++ K G +   Y+  +L+ MY KCG++D+A + F  +  +DV  W+TMI G+A +G
Sbjct: 201 QLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHG 260

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422
            G EAL +F  M+   ++P+  T  +VL ACSH+GLVD+G  +F  M   YG+   + HY
Sbjct: 261 FGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHY 320

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482
           TCMVD+LGRAG L+EA   ++ MP  P A+ WGALLGA +IH N EL E A   + E+EP
Sbjct: 321 TCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEP 380

Query: 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHP 542
            N G  +LLS +YA +G+W +  ++R  MR  G+KK PG S +EV  +IH F  G++SHP
Sbjct: 381 HNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHP 440

Query: 543 LCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEP 602
              +IY+ L+E+  +LK  GY+ + + +   VEEE+ +   L  HSE+LA+AYG++ +  
Sbjct: 441 HTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEE-KVHMLKYHSEKLAVAYGILYIPA 499

Query: 603 SQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            +PIR++KNLRVC DCH   K ISK+  R I+LRD +RFH+F GG+CSC D+W
Sbjct: 500 GRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 97/172 (56%), Gaps = 3/172 (1%)

Query: 80  CALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           C +G F  +   R +FD +PQ +  +W+ +I  YS +    ++   F+++  +     N 
Sbjct: 124 CLMGGF--VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERL-NR 180

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            +F   +   + +    +G+ +H  ++K+ ++   ++ N+L+  Y  CG +  A   F  
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           I +KDVVSWN+MI G+ + GF E+A+ ++  M+   ++PD+ TMV+VL+AC+
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACS 292



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 27/255 (10%)

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
           +A  +F  + ++D+ SWN M++G+V+    + A  L+  M     + D V+  A+LS  A
Sbjct: 13  LARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMP----ERDIVSWNAMLSGYA 68

Query: 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI-HAKMKK 310
           +        + +EA  IF+++ L   +     ++  +L+A  Q G ++   ++  +KM  
Sbjct: 69  QN------GFVDEAREIFYKMPLKNGI-----SWNGLLAAYVQNGRIEDAKRLFESKMDW 117

Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
             +  NC +           G + K   +F  +  RD   WS MIAG++  GC  EAL  
Sbjct: 118 TLVSWNCLMG----------GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
           F  MQ    + N  +FT  L  CS+   ++ GR    ++    G   G      ++ M  
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKA-GYQTGWYVGNALLAMYC 226

Query: 431 RAGLLDEAVEFIEKM 445
           + G +DEA +  +++
Sbjct: 227 KCGSIDEARDAFQEI 241



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           +I  Y +    D A ++F  +  RD+F W+ M+ G+      + A  LF RM E  +   
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI--- 57

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV 415
            V++  +L   + +G VDE R  F +M    G+
Sbjct: 58  -VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGI 89


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 321/571 (56%), Gaps = 45/571 (7%)

Query: 83   GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
            G    +  A+++   +PQP+  TWN LI  ++ + EP ++   + +L+       N  T 
Sbjct: 545  GKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITM 603

Query: 143  PFVIKA-AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              V+ A +A     + G  IH  ++ + FE D ++ NSLI  YA CGDL  +  +F  +G
Sbjct: 604  VSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG 663

Query: 202  KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
             K  ++WN+M++     G  E                                       
Sbjct: 664  NKSPITWNAMVAANAHHGCGE--------------------------------------- 684

Query: 262  PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
              EAL IF E++ +  VN D+F+F   L+A A L  ++ G Q+H  + K G + + ++T 
Sbjct: 685  --EALKIFGEMR-NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN 741

Query: 322  SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
            + +DMY KCG +   L++     +R    W+ +I+ FA +GC ++A + F  M +   KP
Sbjct: 742  AAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKP 801

Query: 382  NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
            + VTF ++L AC+H GLVDEG  +++ M   +GV PG++H  C++D+LGR+G L  A  F
Sbjct: 802  DHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGF 861

Query: 442  IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
            I++MP+ P    W +LL AC+IH N+ELA     HLLEL+P +  A VL SN+ A +GKW
Sbjct: 862  IKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKW 921

Query: 502  DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
            ++V  LRK M  + +KK+P CS +++  ++H F  GE  HP    I +KL E++   K  
Sbjct: 922  EDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEA 981

Query: 562  GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
            GYVP+ S  L  ++EE  +    N HSERLA+A+GLI+   S  +RI KNLRVCGDCH+V
Sbjct: 982  GYVPDTSFALHDMDEEQKEYNLWN-HSERLALAFGLINTPESSTLRIFKNLRVCGDCHSV 1040

Query: 622  AKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
             K +S +  R+I+LRD YRFHHF GG CSC+
Sbjct: 1041 YKFVSGIVGRKIVLRDPYRFHHFSGGKCSCV 1071



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 213/481 (44%), Gaps = 80/481 (16%)

Query: 84  TFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIF--LQLVYNSPYFPNEFT 141
           +FSS+E A  +FD + + ++ +WN +I AY+      +S   F  ++ ++N     N  T
Sbjct: 344 SFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNET---NSTT 400

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
              ++   + +   + G+ IHG+V+K   + ++ I N+L+  Y+  G    A  VF  + 
Sbjct: 401 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 460

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL----- 256
           ++D++SWNSM++ +VQ G     +++  E+       + VT  + L+AC+    L     
Sbjct: 461 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKI 520

Query: 257 -----------EFGRWPNEALSIFHELQL--------------------------SKNVN 279
                      +F    N  ++++ +L +                          ++N  
Sbjct: 521 VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEE 580

Query: 280 PDE-----------------FTFVSVLSAC-AQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           P+E                  T VSVL AC A    +  G+ IHA +   G + + Y+  
Sbjct: 581 PNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKN 640

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SLI MY KCG+L+ +  +F  + ++    W+ M+A  A +GCG EAL +F  M+   V  
Sbjct: 641 SLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNL 700

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           +  +F+  L A ++  +++EG+     +  + G    +      +DM G+ G + + ++ 
Sbjct: 701 DQFSFSGGLAATANLAVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKM 759

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE-------------NHGAL 488
           + + PI      W  L+ A   H   + A      +L+L P+             NHG L
Sbjct: 760 LPQ-PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGL 818

Query: 489 V 489
           V
Sbjct: 819 V 819



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 191/428 (44%), Gaps = 59/428 (13%)

Query: 41  VFSLIKQCKNIKQLK----QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFD 96
           V SLI  C     +     Q+H  +++TG+  D Y  + L      G+   +  A+++F+
Sbjct: 198 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVH--FYGSIGLVYNAQKLFE 255

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  N+ +W +L+  YS S  P +   ++ Q +       N+ TF  V  +   L    
Sbjct: 256 EMPDHNVVSWTSLMVGYSDSGNPGEVLNVY-QRMRQEGVSGNQNTFATVTSSCGLLEDQV 314

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
           +G  + G +I+  FED + ++NSLI  ++    +  A  VF  + + D++SWN+MIS + 
Sbjct: 315 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 374

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G   +++  +  M   + + +  T+ ++LS C+   +L++GR                
Sbjct: 375 HHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR---------------- 418

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                                      IH  + K G+  N  +  +L+ +Y++ G  + A
Sbjct: 419 --------------------------GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 452

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  +  RD+  W++M+A +   G   + L + + + +     N VTF + L ACS+ 
Sbjct: 453 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 512

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHY----TCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
             + E ++    +     +V G   +      +V M G+ G++ EA + ++ MP  P   
Sbjct: 513 ECLIESKIVHALI-----IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRV 566

Query: 453 VWGALLGA 460
            W AL+G 
Sbjct: 567 TWNALIGG 574



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 137/302 (45%), Gaps = 44/302 (14%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F ++E+AR +FD++   N  +W+T++  Y       ++  +F Q+ +     PN F    
Sbjct: 142 FGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVAS 200

Query: 145 VIKAAARL-VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK 203
           +I A +R       G  +HG V+K+    D+++  +L+HFY   G +  A  +F  +   
Sbjct: 201 LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDH 260

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           +VVSW S++ G+   G                                          P 
Sbjct: 261 NVVSWTSLMVGYSDSGN-----------------------------------------PG 279

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
           E L+++  ++  + V+ ++ TF +V S+C  L    +G Q+   + + G + +  +  SL
Sbjct: 280 EVLNVYQRMR-QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
           I M++   ++++A  VF  +   D+  W+ MI+ +A +G  RE+L  F  M+    + N+
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 384 VT 385
            T
Sbjct: 399 TT 400



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 172/402 (42%), Gaps = 55/402 (13%)

Query: 70  PYSASKLFTPCALGTFSSL---EYAREMF-DQIPQPNLYTWNTLIRAYSSSAEPIQSFMI 125
           P   ++ + P +  T +S    E   E F +Q+   +L T N   R +      I    +
Sbjct: 23  PVGKTRQWAPVSTITTASALINETPVENFAEQVKDDDLKTSNAGSRRWGCLDGDIAKVFL 82

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
             Q         N   FP  +K  + +     G+A+H   I  S    +F +N+LI+ Y+
Sbjct: 83  QQQHTDYGIRCLNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYS 140

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
             G++  A  VF  +  ++  SW++M+SG+V+ G +E+A+ L+ +M    V+P+   + +
Sbjct: 141 KFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVAS 200

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM-DIGVQI 304
           +++AC++                                           G M D G Q+
Sbjct: 201 LITACSRS------------------------------------------GYMADEGFQV 218

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  + K GI  + Y+ T+L+  Y   G +  A ++F  +   +V  W++++ G++  G  
Sbjct: 219 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 278

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV--YGVVPGVKHY 422
            E L+++ RM++  V  N  TF  V  +C   GL+++  + +  +  +  YG    V   
Sbjct: 279 GEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVA 335

Query: 423 TCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
             ++ M      ++EA    + M      S W A++ A   H
Sbjct: 336 NSLISMFSSFSSVEEACYVFDHMNECDIIS-WNAMISAYAHH 376


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 326/568 (57%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E AR +F+ +   +  TW T++  ++ +    Q+   F ++ +      +++TF  ++ 
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAI-DQYTFGSILT 280

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           A   L     G+ IH  +I++ ++D++F+ ++L+  Y+ C  +  A   F  +  K+++S
Sbjct: 281 ACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIIS 340

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W ++I G+ Q G  E                                         EA+ 
Sbjct: 341 WTALIVGYGQNGCSE-----------------------------------------EAVR 359

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F E+Q    ++PD+FT  SV+S+CA L +++ G Q H      G+     ++ +L+ +Y
Sbjct: 360 VFSEMQ-RDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLY 418

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
            KCG+++ A  +F  +   D   W+ ++ G+A +G  +E +DLF +M    VKP+ VTF 
Sbjct: 419 GKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFI 478

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL ACS +G V++G  +F+ M+  +G+VP   HYTCM+D+  R+G L EA EFI++MP+
Sbjct: 479 GVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPM 538

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P A  WG LL AC++  ++E+ ++A  +LLE++P+N  + VLL +++A  G W+ V++L
Sbjct: 539 HPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQL 598

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ MR   +KKEPGCS I+   ++H F A + SHP  K IY KL+ + +++   GY P+ 
Sbjct: 599 RRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDV 658

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +L  V + D +   ++ HSE+LAIA+GL+ V    PIRIVKNLRVC DCH   KLISK
Sbjct: 659 SSVLHDVADTD-KVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISK 717

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  R+IL+RD  RFH F  G CSC D+W
Sbjct: 718 ITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 227/495 (45%), Gaps = 63/495 (12%)

Query: 63  RTGLFFDPYSASKLFTPCALGTFSSLEYAR------EMFDQIPQPNLYTWNTLIRAYSSS 116
           R    FD      LFT  AL   S+L +AR       +F  + Q +  ++N +I  +S  
Sbjct: 59  RARRVFDATPHPNLFTYNAL--LSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGG 116

Query: 117 AEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
               ++  ++  L+   S   P+  T   ++ AA+ L    +G+  H  +++  F  + F
Sbjct: 117 GAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAF 176

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           + + L+  YA  G +  A  VF  +  K+VV +N+MI+G ++    E+A  L+  M    
Sbjct: 177 VGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVM---- 232

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
              D +T   +++   +   LE     ++AL+ F  ++  + +  D++TF S+L+AC  L
Sbjct: 233 TDRDCITWTTMVTGFTQN-GLE-----SQALNFFRRMRF-QGIAIDQYTFGSILTACGAL 285

Query: 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI 355
            A++ G QIHA + +     N ++ ++L+DMY+KC ++  A   F  +  +++  W+ +I
Sbjct: 286 SALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALI 345

Query: 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF--------- 406
            G+   GC  EA+ +FS MQ   + P+  T  +V+ +C++   ++EG  F          
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM 405

Query: 407 ------NQMEPVYGVVPGVKH---------------YTCMVDMLGRAGLLDEAVEFIEKM 445
                 N +  +YG    ++                +T +V    + G   E ++  EKM
Sbjct: 406 HYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKM 465

Query: 446 ---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL------LSNIYA 496
               + P    +  +L AC         E  CS+   ++ ++HG + +      + ++Y+
Sbjct: 466 LAKDVKPDGVTFIGVLSAC---SRAGFVEKGCSYFHSMQ-KDHGIVPIDDHYTCMIDLYS 521

Query: 497 KTGKWDNVSELRKHM 511
           ++G+     E  K M
Sbjct: 522 RSGRLKEAEEFIKQM 536



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 51/316 (16%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           ++Q KQIH  ++RT    + +  S L   ++ C      S++ A   F ++   N+ +W 
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKC-----RSIKPAETAFRRMSCKNIISWT 342

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
            LI  Y  +    ++  +F ++  +    P++FT   VI + A L     G   H + + 
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDG-IDPDDFTLGSVISSCANLASLEEGAQFHCLALV 401

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           S     + +SN+L+  Y  CG +  A+ +F  +   D VSW ++++G+ Q G  ++ I+L
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDL 461

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           + +M  ++VKPD VT + VLSAC++   +E G       S FH +Q    + P +  +  
Sbjct: 462 FEKMLAKDVKPDGVTFIGVLSACSRAGFVEKG------CSYFHSMQKDHGIVPIDDHY-- 513

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR- 346
                                            T +ID+Y++ G L +A E    +    
Sbjct: 514 ---------------------------------TCMIDLYSRSGRLKEAEEFIKQMPMHP 540

Query: 347 DVFVWSTMIAGFAMYG 362
           D   W T+++   + G
Sbjct: 541 DAIGWGTLLSACRLRG 556


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/634 (33%), Positives = 349/634 (55%), Gaps = 56/634 (8%)

Query: 28  LTVNNGHQHHPHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLF---TPCA 81
           L +N  +        +L+  C   K+I+ +K++   M+ +GL  D Y  +++      C 
Sbjct: 121 LELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCG 180

Query: 82  LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
           +     +  AR +FD++P+ N+ +WNT+I     + +  ++F +FL +++          
Sbjct: 181 M-----MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFL-MMWQXFSDAGSRM 234

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201
           F  +I+A+A L     G+ +H   +K+    D+F++ +LI  Y+ CG +  A CVF  + 
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           +K  V WNS+I+G+   G+ E                                       
Sbjct: 295 EKTTVGWNSIIAGYALHGYSE--------------------------------------- 315

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
             EALS+++E++ S  V  D FTF  ++  CA+L +++   Q HA + + G  L+    T
Sbjct: 316 --EALSMYYEMRDS-GVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANT 372

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           +L+D+Y+K G ++ A  VF  +  ++V  W+ +IAG+  +G G EA+++F RM    + P
Sbjct: 373 ALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVP 432

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           N VTF  VL ACS+SGL D G   F  M   + + P   HY CM+++LGR GLLDEA   
Sbjct: 433 NHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 492

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I+  P  P  ++W ALL AC++H+N EL ++A   L  + PE     V+L NIY  +G+ 
Sbjct: 493 IKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRL 552

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           +  + + + ++  GL+  P CS IE+  + + F++G+  H   KEIY KLDE++  +   
Sbjct: 553 EEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKH 612

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           GYVP    LL  V+E+  +E+ L  HSE+LAIA+GLI+     P++IV++ R+CGDCH+ 
Sbjct: 613 GYVPQXKFLLPDVDEQ--EERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSA 670

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            KLI+ +  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 671 IKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 2/221 (0%)

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C +   L F +  +EAL +F  L+L+   + D  T+ +++SAC  L ++    ++   M 
Sbjct: 99  CGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMI 158

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
             G+  + YL   ++ M+ KCG +  A  +F  +  +++  W+T+I G    G   EA  
Sbjct: 159 NSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFR 218

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF  M +      +  F  ++ A +  GL+  GR   +      GV   V     ++DM 
Sbjct: 219 LFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMY 277

Query: 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            + G +++A    ++MP       W +++    +H   E A
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGYALHGYSEEA 317


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/598 (35%), Positives = 332/598 (55%), Gaps = 53/598 (8%)

Query: 61  MLRTGLFFDPYSASKLF---TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSA 117
           M+  G  FD Y  +++      C +     +  AR +FD++P+ NL +WNT+I       
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGM-----MIDARRLFDEMPERNLVSWNTIISGLVDVG 55

Query: 118 EPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFIS 177
           + +++F +FL + +        FTF  +I+A+A L    +G+ +H   +K    DD+F+S
Sbjct: 56  DFMEAFRLFLNM-WEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVS 114

Query: 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK 237
            +LI  Y+ CG +  A  VF  + +K  V WN++I+G+   G+ E               
Sbjct: 115 CALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSE--------------- 159

Query: 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                                     EAL +++E++ S  V  D FTF  ++  CA+L +
Sbjct: 160 --------------------------EALDMYYEMRDS-GVKMDHFTFSMIVRICARLAS 192

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           ++   Q HA + + G   +    T+L+D Y+K G ++ A  VF  + S++V  W+ +I G
Sbjct: 193 VEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGG 252

Query: 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417
           +  +G G EA++LF +M + ++ PN +TF  VL ACSHSGL + G   F  M     + P
Sbjct: 253 YGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKP 312

Query: 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477
              HY CM++++GR GLLDEA+  I   P  P A++W ALL AC+++EN EL ++A   L
Sbjct: 313 RAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKL 372

Query: 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAG 537
             +EP+     ++L NIY   G     +++   ++  GL+  P CS IEV    H FL+G
Sbjct: 373 YGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSG 432

Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597
           ++ HP  KEIY K+D+++  +  +GYVPN+  LL  V+E+  +E+    HSE+LAIA+GL
Sbjct: 433 DNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQ--EERVRLYHSEKLAIAFGL 490

Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           IS     P++IV+  R+CGDCH   KLI+++  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 491 ISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSCEDYW 548



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 132/364 (36%), Gaps = 122/364 (33%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +Q+H   L+ G+         +F  CAL        S+E AR +F+++P+     WNT+I
Sbjct: 96  RQLHACTLKMGI------GDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTII 149

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             Y+      ++  ++ ++  +S    + FTF  +++  ARL      +  H  +I+  F
Sbjct: 150 AGYALHGYSEEALDMYYEM-RDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGF 208

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSM------------------- 211
             D+  + +L+ FY+  G +  A  VF  +  K+V+SWN++                   
Sbjct: 209 GSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQ 268

Query: 212 ----------------ISGFVQGGFFEKAIELYREMEMEN-------------------- 235
                           +S     G  E+  E+++ M  +N                    
Sbjct: 269 MIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREG 328

Query: 236 -------------VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
                         KP      A+L+AC    + E G++  E L           + PD 
Sbjct: 329 LLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLY---------GMEPD- 378

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
                                          KLN Y+   L+++Y   GNL +A +V HT
Sbjct: 379 -------------------------------KLNNYIV--LLNIYNSAGNLKEAADVVHT 405

Query: 343 VKSR 346
           +K +
Sbjct: 406 LKRK 409


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 324/576 (56%), Gaps = 53/576 (9%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           L  AR  FD I  P++ +WN +  AY       ++ ++F +++      P+  TF   + 
Sbjct: 405 LPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG-VRPSVATFITALT 463

Query: 148 AAARL---VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI--GK 202
           A A         +G+ I  ++ ++  E D  ++N+ ++ YA CG LA A  VF  I   +
Sbjct: 464 ACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPAR 523

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRW 261
           +D ++WNSM++ +   G  ++A EL++ ME E  VKP++VT VAVL A   +  +  GR 
Sbjct: 524 RDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGR- 582

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                                                    +IHA++   G + +  +  
Sbjct: 583 -----------------------------------------EIHARVVSNGFESDTVIQN 601

Query: 322 SLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
           +L++MY KCG+LD A  +F    S   DV  W+++IAG+A YG    AL LF  MQ+  V
Sbjct: 602 ALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGV 661

Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           +PN VTF + L AC+H G +++G    + M P +G++P  KH++C+VD+LGR G LDEA 
Sbjct: 662 RPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAE 721

Query: 440 EFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499
           + +E+         W ALL ACK  + +E  E     +++L+PE   + ++L+++YA  G
Sbjct: 722 KLLERTSQAD-VITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAG 780

Query: 500 KWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           +W+  + +RK M   G++ +PGCS++EVN E+H F AG+ SHP  +EIY +L+ +   +K
Sbjct: 781 RWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIK 840

Query: 560 SFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
           + GYV +   +L  V +E  +E+ L  HSE+LAIA+GL+S     P+R++KNLRVC DCH
Sbjct: 841 AAGYVADTGLVLHDVSQEH-KERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCH 899

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           T  KLISK+  R+IL+RD  R+HHF  G CSC DYW
Sbjct: 900 TATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 223/492 (45%), Gaps = 97/492 (19%)

Query: 39  HPVFSLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAR 92
           H + +L+  C    N+   ++IH+Q+       +    + L   ++ C      SL  A+
Sbjct: 142 HALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCG-----SLIDAK 196

Query: 93  EMFDQIPQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
           + FD++P+    ++ TWN +I A+  +    ++  +F  +  +    PN  TF  V+ + 
Sbjct: 197 QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSC 256

Query: 150 --ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD--- 204
             A L+     +AIHG ++ +  E + F+  +L+  Y   G L  A+ VF+  G ++   
Sbjct: 257 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPST 316

Query: 205 -VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC------------- 250
            +V+ ++MIS   Q G+ ++++ L+  M +E  KP  VT+V+VL+AC             
Sbjct: 317 SLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVL 376

Query: 251 -----------------------AKKRDLEFGR-------------W------------P 262
                                  A+  DL   R             W             
Sbjct: 377 EQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRS 436

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQL---GAMDIGVQIHAKMKKQGIKLNCYL 319
            EAL +F  + L + V P   TF++ L+ACA      A  IG +I + +++ G++ +  +
Sbjct: 437 REALVLFERMLL-EGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAV 495

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVK--SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
             + ++MY KCG+L  A  VF  +    RD   W++M+A +  +G G+EA +LF  M+  
Sbjct: 496 ANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAE 555

Query: 378 K-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT----CMVDMLGRA 432
           K VKPN VTF  VL A +    + +GR    ++     V  G +  T     +++M  + 
Sbjct: 556 KLVKPNKVTFVAVLDASTSRTSIAQGREIHARV-----VSNGFESDTVIQNALLNMYAKC 610

Query: 433 GLLDEAVEFIEK 444
           G LD+A    +K
Sbjct: 611 GSLDDAQAIFDK 622



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 53/308 (17%)

Query: 55  KQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQI--PQPNLYTWNTL 109
           K+I + +   GL  D   A+    ++  C      SL  AR +F++I   + +  TWN++
Sbjct: 478 KRIQSLLEEAGLEGDTAVANATLNMYAKCG-----SLADARAVFERISPARRDCITWNSM 532

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           + AY       ++F +F  +       PN+ TF  V+ A+        G+ IH  V+ + 
Sbjct: 533 LAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNG 592

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
           FE D  I N+L++ YA CG L  A  +F      ++DV++W S+I+G+ Q G  E+A++L
Sbjct: 593 FESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKL 652

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           +  M+ + V+P+ VT ++ L+AC     LE G             +L   + PD      
Sbjct: 653 FWTMQQQGVRPNHVTFISALTACNHGGKLEQG------------CELLSGMTPD------ 694

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
                                   GI       + ++D+  +CG LD+A ++       D
Sbjct: 695 -----------------------HGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQAD 731

Query: 348 VFVWSTMI 355
           V  W  ++
Sbjct: 732 VITWMALL 739



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 154/336 (45%), Gaps = 67/336 (19%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFE--DDLFISNSLIHFYAICGDLAMAYCVFV 198
           T+  +++A  RL   + GQ +H  ++    +  +  F+++ LI  +A CG+LA A  +  
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
                 V S  +MI  +                                        +E 
Sbjct: 105 RFAS--VYSCTAMIRAW----------------------------------------MEH 122

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
           GR P++A+ +F  ++    V P+    +++++AC+ LG +  G +IH+++  +  + N  
Sbjct: 123 GR-PDKAMELFDRME----VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSV 177

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGREALDLFSRM- 374
           L  +LI MY+KCG+L  A + F  +     RDV  W+ MI+ F   G  REAL LF  M 
Sbjct: 178 LGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMD 237

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK------HYTCMVDM 428
           ++    PN+VTF +VL +C  +GL+         +  ++G + G          T +VD 
Sbjct: 238 RDGAPPPNSVTFVSVLDSCVEAGLLS-----LEDVRAIHGRIVGAGIEREAFVRTALVDS 292

Query: 429 LGRAGLLDEAVE-FIEKMPIVPGASV--WGALLGAC 461
            G+ G LD+A E F+ K    P  S+    A++ AC
Sbjct: 293 YGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISAC 328



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 162/383 (42%), Gaps = 64/383 (16%)

Query: 26  TTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQ---IHTQML--RTGLFFDPYSASKLFTPC 80
           + +  + GH   P     L++ C  ++ LKQ   +H  +L  R  L    + AS L    
Sbjct: 32  SRIIADQGH-CAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMH 90

Query: 81  A-LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE 139
           A  G  +  E   + F      ++Y+   +IRA+     P ++  +F ++       PN 
Sbjct: 91  AKCGNLAEAEALADRF-----ASVYSCTAMIRAWMEHGRPDKAMELFDRMEVR----PNC 141

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
                ++ A + L     G+ IH  +    FE++  + N+LI  Y+ CG L  A   F  
Sbjct: 142 HALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDR 201

Query: 200 I---GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMVAVLSACAKKRD 255
           +    K+DVV+WN+MIS F++ G   +A++L+R+M+ +    P+ VT V+VL +C     
Sbjct: 202 LPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSC----- 256

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
           +E G    E +   H   +   +  + F   +++                          
Sbjct: 257 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV-------------------------- 290

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVF----HTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371
                    D Y K G+LD A EVF        S  +   S MI+     G  +E+L LF
Sbjct: 291 ---------DSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLF 341

Query: 372 SRMQEAKVKPNAVTFTNVLCACS 394
             M     KP+ VT  +VL ACS
Sbjct: 342 FAMNLEGTKPSGVTLVSVLNACS 364


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 349/621 (56%), Gaps = 60/621 (9%)

Query: 43  SLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFD 96
           S+IK C N+K+L+   Q+H  +++ G  FD    + L   ++ C     + L+  R   +
Sbjct: 304 SIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKC----MAMLDALRLFKE 359

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
                N+ +W  +I  +  +    ++  +F ++       PNEFT+  ++ A   +    
Sbjct: 360 TGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVR-PNEFTYSVILTALPVISP-- 416

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
               +H  V+K+++E    +  +L+  Y   G +  A  VF  I  KD+V+W++M++G+ 
Sbjct: 417 --SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA 474

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           Q G  E AI+                                         IF EL    
Sbjct: 475 QAGETEAAIK-----------------------------------------IFSELT-KG 492

Query: 277 NVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
            V P+EFTF S+L+ CA   A M  G Q H    K  +  +  ++++L+ MY K G+++ 
Sbjct: 493 GVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIES 552

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A EVF   + +D+  W++MI+G+A +G   +ALD+F  M++ KVK ++VTF  V  AC+H
Sbjct: 553 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTH 612

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           +GLV+EG  +F+ M     + P  +H +CMVD+  RAG L++A++ I+ MP + G+++W 
Sbjct: 613 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWR 672

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            +L AC++H+  EL   A   ++ + PE+  A VLLSN+YA++G W   +++RK M    
Sbjct: 673 TILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERN 732

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
           +KKEPG S IEV  + + FLAG+ SHPL  +IY KL+++  RLK  GY P+ S++LQ ++
Sbjct: 733 VKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDID 792

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           +E  +E  L  HSERLAIA+GLI+     P+ I+KNLRVCGDCH V KLI+K+  REI++
Sbjct: 793 DEH-KEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVV 851

Query: 636 RDRYRFHHFRG-GNCSCMDYW 655
           RD  RFHHF   G CSC D+W
Sbjct: 852 RDSNRFHHFSSDGVCSCGDFW 872



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 190/412 (46%), Gaps = 68/412 (16%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           +Q+H Q ++ G   D    + L      G  S+ +  R +FD++ + N+ TW TLI  Y+
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKG--SNFKDGRNVFDEMKERNVVTWTTLISGYA 174

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            ++   +   +F+++  +    PN FTF   +   A       G  +H +V+K+  +  +
Sbjct: 175 RNSLNEEVLTLFMRM-QDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTI 233

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
            +SNSLI+ Y  CG++  A  +F     K VV+WNSMISG+   G   +A+ ++  M + 
Sbjct: 234 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLN 293

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPN-----------------------------EA 265
           +V+  E +  +++  CA  ++L F    +                             +A
Sbjct: 294 HVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDA 353

Query: 266 LSIFHELQLSKNV-------------------------------NPDEFTFVSVLSACAQ 294
           L +F E     NV                                P+EFT+  +L+A   
Sbjct: 354 LRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPV 413

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           +       ++HA++ K   + +  + T+L+D Y K G +D+A +VF  + ++D+  WS M
Sbjct: 414 ISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAM 469

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH-SGLVDEGRMF 405
           +AG+A  G    A+ +FS + +  VKPN  TF+++L  C+  +  + +G+ F
Sbjct: 470 LAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQF 521



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 141/310 (45%), Gaps = 43/310 (13%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S L YA  +FD+ P  +  ++ +L+  +S      ++  +FL + +          F  V
Sbjct: 45  SRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI-FSSV 103

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           +K +A L     G+ +H   IK  F DD+ +  SL+  Y    +      VF  + +++V
Sbjct: 104 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+W ++ISG+ +    E+ + L+  M+      DE T                       
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQ------DEGT----------------------- 194

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
                         P+ FTF + L   A+ G    G+Q+H  + K G+     ++ SLI+
Sbjct: 195 -------------QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLIN 241

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           +Y KCGN+ KA  +F   + + V  W++MI+G+A  G   EAL +F  M+   V+ +  +
Sbjct: 242 LYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESS 301

Query: 386 FTNVLCACSH 395
           F +++  C++
Sbjct: 302 FASIIKLCAN 311



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 58/118 (49%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F SVL   A L     G Q+H +  K G   +  + TSL+D Y K  N      VF  +K
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
            R+V  W+T+I+G+A      E L LF RMQ+   +PN+ TF   L   +  G+   G
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 341/615 (55%), Gaps = 52/615 (8%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP--NLYT 105
           C ++  ++Q+H+    +G  FD Y + K            LE A  +F+ + +   +  +
Sbjct: 151 CNHVGLIRQLHSLAFSSG--FDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVS 208

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WN++I AY      +++  ++  +V+   +  + FT   V+   + +     G   H   
Sbjct: 209 WNSMIVAYGQHKRGLKALALYRDMVHRG-FEIDMFTLASVLTTFSCVEDLSGGLQFHAKA 267

Query: 166 IKSSFEDDLFISNSLIHFYAICG-DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE-K 223
           IK+ F  +  + + LI  YA CG  ++ +  VF  I   D+V WN+MISG+ Q      +
Sbjct: 268 IKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVE 327

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
           A+E +R+M+                          G WP                  D+ 
Sbjct: 328 ALECFRQMQ------------------------RAGYWP------------------DDC 345

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHT 342
           +FV  +SAC+ L +   G Q HA   K  I  N   +  +L+ MY+KCGNL  A ++F  
Sbjct: 346 SFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQR 405

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +   +    +++IAG+A +G G E+L+LF +M  A + P ++T  ++L AC+H+G V+EG
Sbjct: 406 MPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG 465

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           + +FN M+ ++G+ P  +HY+CM+D+LGRAG L EA   I+ MP  PG++ W ALLGAC+
Sbjct: 466 KKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACR 525

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            + N+ELAE A +  L+LEP N    ++L+++Y+   KW+  + +RK MR  G++K+PGC
Sbjct: 526 KYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGC 585

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
           S IE+N  +H F+A ++SHP  KEI+  LDE+  ++K  GYVP+        +E   QE+
Sbjct: 586 SWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEK 645

Query: 583 ALNL--HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
            + L  HSE+LA+A+GL+  +  +P+ +VKNLR+CGDCH   K +S +  R+I +RD YR
Sbjct: 646 EIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYR 705

Query: 641 FHHFRGGNCSCMDYW 655
           FH F  G CSC DYW
Sbjct: 706 FHCFEDGRCSCGDYW 720



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 171/367 (46%), Gaps = 53/367 (14%)

Query: 86  SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           S +  A  +FDQIPQP+L ++NTLI AY+   + + +  +F ++        + FTF  V
Sbjct: 88  SLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEM-REMGLVMDGFTFSGV 146

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K 203
           I A    V     + +H +   S F+  + + NSL+ +Y+  G L  A  VF  +G+  +
Sbjct: 147 ITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVR 204

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D VSWNSMI  + Q     KA+ LYR+M     + D  T+ +VL+               
Sbjct: 205 DEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT-------------- 250

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
                              F+ V  LS          G+Q HAK  K G   N ++ + L
Sbjct: 251 -------------------FSCVEDLSG---------GLQFHAKAIKTGFNKNRHVGSGL 282

Query: 324 IDMYTKCG-NLDKALEVFHTVKSRDVFVWSTMIAGFAMYG-CGREALDLFSRMQEAKVKP 381
           IDMY KCG  + ++ +VF  +   D+ VW+TMI+G++       EAL+ F +MQ A   P
Sbjct: 283 IDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWP 342

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLDEAV 439
           +  +F   + ACS+     +G+ F      +   +P   +     +V M  + G L +A 
Sbjct: 343 DDCSFVCAISACSNLSSPSQGKQF--HALAMKSEIPSNQISVNNALVTMYSKCGNLQDAR 400

Query: 440 EFIEKMP 446
           +  ++MP
Sbjct: 401 KLFQRMP 407



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 122/258 (47%), Gaps = 19/258 (7%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           +F  ++K+         G+++H + +KS      ++SN  I  Y+ C  L  A+  F   
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            + +V S+N++I+ + +      A  L+ ++     +PD V+   +++A A + D     
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIP----QPDLVSFNTLINAYADRGD----- 120

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQGIKLNCY 318
               ALS+F E++    +  D FTF  V++AC       +G+  Q+H+     G      
Sbjct: 121 -TLSALSLFGEMR-EMGLVMDGFTFSGVITACCN----HVGLIRQLHSLAFSSGFDSYVS 174

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTV--KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
           +  SL+  Y+K G L++A  VF+ +  + RD   W++MI  +  +  G +AL L+  M  
Sbjct: 175 VKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVH 234

Query: 377 AKVKPNAVTFTNVLCACS 394
              + +  T  +VL   S
Sbjct: 235 RGFEIDMFTLASVLTTFS 252


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/524 (39%), Positives = 313/524 (59%), Gaps = 14/524 (2%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + SL+KQC N+K L Q H  ML  GL  D    S+    C+   FS   Y+  +F    +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS--HYSHSIFTHKTR 101

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P++Y +NT+I+A S+     ++ +++ +++ +   F + ++ PFV+KA  RL+   VG+ 
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRF-DTYSLPFVLKAVVRLLAIHVGRQ 160

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IH   I +    D+ +  +LI  Y+ CG ++ A  +F  +  +DV  WN+M++G+ + G 
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            + A  L+  M   NV    ++  AV++  A+         PNEA+++F  +QL + V P
Sbjct: 221 VDNARHLFERMPERNV----ISWTAVIAGYAQMDR------PNEAITMFRRMQLEE-VEP 269

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           DE   ++ LSACA LGA+++G  IH  + K G+     L  +LIDMY KCG ++KALEVF
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVF 329

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             ++ + V  W++MI G A++G GREAL++FS M+  ++KPN +TF  +L AC H GLV+
Sbjct: 330 KNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVE 389

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            GR +F  M   YG+ P ++HY CM+D+LGRAG L EA E +  MP    A +WG+LL A
Sbjct: 390 MGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAA 449

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
            +IH + EL + A  HL+++EP N G   LLSNIYA   KW+    +RK MR +G+KK P
Sbjct: 450 ARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMP 509

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           G S IEVN  +H+F+AG+  HP  + I+  L +I  + K   YV
Sbjct: 510 GGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYV 553


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/641 (34%), Positives = 338/641 (52%), Gaps = 73/641 (11%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT--------PCALGTF---------- 85
           + + C+ +  L+Q+H     +G   D ++A+ L          P A G F          
Sbjct: 51  IFRACQALPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMS 110

Query: 86  -----------SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP 134
                        LE AR++FD++P  N+ TWN ++   ++S    +S   F  +     
Sbjct: 111 WNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAM-RREG 169

Query: 135 YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
             P+E+    + +  A L     G+ +H  V++S  + D+ + +SL H Y  CG L    
Sbjct: 170 MQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 229

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
                +   ++VS N+ ISG  Q G  E A+E +  M    V+ + VT            
Sbjct: 230 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVT------------ 277

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                         FVS +++C+ L A+  G QIHA   K G+ 
Sbjct: 278 ------------------------------FVSAVTSCSDLAALAQGQQIHALAIKTGVD 307

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               + TSL+ MY++CG L  +  V       D+ + S MI+ +  +G G++A+ LF +M
Sbjct: 308 KVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQM 367

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
             A  +PN VTF  +L ACSHSGL DEG   F  M   YG+ P VKHYTC+VD+LGR+G 
Sbjct: 368 MAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGC 427

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
           L+EA + I  MP+ P   +W  LL ACK  +  ++AE     ++EL+P +  + VLLSNI
Sbjct: 428 LNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNI 487

Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
            A + +W++VS++R+ MR   ++KEPG S +E+ G+IH+F  G+ SH   +EI   L+E+
Sbjct: 488 RATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEM 547

Query: 555 VARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRV 614
           + R++  GY P+ S +   +E+E+ +E +L  HSE+LAIA+  +S+    PIR++KNLRV
Sbjct: 548 MTRIRQCGYAPDMSMVFHDMEDEE-KEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRV 606

Query: 615 CGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           C DCH   KL+SK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 607 CDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/619 (34%), Positives = 340/619 (54%), Gaps = 55/619 (8%)

Query: 43  SLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLF---TPCALGTFSSLEYAREMFD 96
           +LI  C   K+I+ +K++   M+  G   D Y  +++      C +     +  A  +FD
Sbjct: 137 ALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGM-----MIDACRLFD 191

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           ++P  N  +W T+I  Y  S   +++F +F+ L+    Y     TF  +I+A+A L    
Sbjct: 192 EMPARNAVSWGTIISGYVDSGNYVEAFRLFI-LMREEFYDCGPRTFATMIRASAGLEIIF 250

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ +H   IK+    D+F+S +LI  Y+ CG L  A+CVF  +  K +V WNS+I+G+ 
Sbjct: 251 PGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYA 310

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
             G+ E                                         EAL ++HE++ S 
Sbjct: 311 LHGYSE-----------------------------------------EALDLYHEMRDS- 328

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
            V  D FTF  ++  C++L ++    Q+HA + + G  L+    T+L+D Y+K G +D A
Sbjct: 329 GVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDA 388

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
             VF  +  R++  W+ +IAG+  +G G EA+D+F +M    + PN VTF  VL ACS S
Sbjct: 389 RHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSIS 448

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GL + G   F  M   + V P   H+ CM+++LGR GLLDEA   I K P  P A++W A
Sbjct: 449 GLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAA 508

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL AC++H N+EL ++A   L  +EPE     ++L NIY  +GK    +++ + ++  GL
Sbjct: 509 LLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGL 568

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +  P CS IEVN + H FL+G+  H   +++  K+DE++  +   GYVP   + + L + 
Sbjct: 569 RMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFM-LPDV 627

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
           ++ +E+    HSE+LAIAYGL++     P++IV++ R+C DCH+V KLI+ +  REI++R
Sbjct: 628 DENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIR 687

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D  RFHHFR G+CSC DYW
Sbjct: 688 DASRFHHFRDGSCSCGDYW 706



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
           C++   L   +   +AL +F   +L    +    T+ ++++AC  L ++    ++   M 
Sbjct: 100 CSQIEKLVLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMV 159

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
             G + + Y+   ++ M+ KCG +  A  +F  + +R+   W T+I+G+   G   EA  
Sbjct: 160 DNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFR 219

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429
           LF  M+E        TF  ++ A +   ++  GR   +      G+   +     ++DM 
Sbjct: 220 LFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQ-LHSCAIKAGLGQDIFVSCALIDMY 278

Query: 430 GRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELA 470
            + G L++A    ++MP   + G   W +++    +H   E A
Sbjct: 279 SKCGSLEDAHCVFDEMPDKTIVG---WNSIIAGYALHGYSEEA 318



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 112/281 (39%), Gaps = 48/281 (17%)

Query: 39  HPVFSLI----KQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
           H  FS+I     +  ++ + KQ+H  ++R G   D  + + L        +  ++ AR +
Sbjct: 334 HFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVD--FYSKWGKVDDARHV 391

Query: 95  FDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154
           FD++   N+ +WN LI  Y +     ++  +F +++      PN  TF  V+ A +    
Sbjct: 392 FDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKML-REGMMPNHVTFLAVLSACSISGL 450

Query: 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISG 214
           F  G  I       S   D  +    +HF           C+  ++G++           
Sbjct: 451 FERGWEIF-----QSMTRDHKVKPRAMHF----------ACMIELLGRE----------- 484

Query: 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274
               G  ++A  L R+   +   P      A+L AC    +LE G++  E L      +L
Sbjct: 485 ----GLLDEAYALIRKAPFQ---PTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKL 537

Query: 275 SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
           S         ++ +L+     G +     +   +K++G+++
Sbjct: 538 S--------NYIVLLNIYNSSGKLKEAADVFQTLKRKGLRM 570


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 334/603 (55%), Gaps = 47/603 (7%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           LK++H   L+    ++   A+      A     SL YA+ +F  I    + +WN LI  +
Sbjct: 414 LKELHCYSLKQEFVYNELVANAFVASYA--KCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           + S +P  S    LQ+   S   P+ FT   ++ A ++L   R+G+ +HG +I++  E D
Sbjct: 472 AQSNDPRLSLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 530

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           LF+  S++  Y  CG+L     +F  +  K +VSWN++I+G++Q GF ++A+ ++R+M +
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 590

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             ++   ++M+ V  AC+    L  GR                                 
Sbjct: 591 YGIQLCGISMMPVFGACSLLPSLRLGR--------------------------------- 617

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                    + HA   K  ++ + ++  SLIDMY K G++ ++ +VF+ +K +    W+ 
Sbjct: 618 ---------EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 668

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI G+ ++G  +EA+ LF  MQ     P+ +TF  VL AC+HSGL+ EG  + +QM+  +
Sbjct: 669 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSF 728

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIHENVELAEY 472
           G+ P +KHY C++DMLGRAG LD+A+  + E+M       +W +LL +C+IH+N+E+ E 
Sbjct: 729 GLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEK 788

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
             + L ELEPE     VLLSN+YA  GKW++V ++R+ M    L+K+ GCS IE+N ++ 
Sbjct: 789 VAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 848

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F+ GE      +EI S    +  ++   GY P+   +   + EE+  EQ L  HSE+LA
Sbjct: 849 SFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQ-LRGHSEKLA 907

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           + YGLI       IR+ KNLR+C DCH  AKLISK+  REI++RD  RFHHF+ G CSC 
Sbjct: 908 LTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCG 967

Query: 653 DYW 655
           DYW
Sbjct: 968 DYW 970



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 171/359 (47%), Gaps = 53/359 (14%)

Query: 49  KNIKQLKQIHTQMLR--TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106
           K+I+  ++IH Q++   T L  D    +++ T  A+    S + +R +FD +   NL+ W
Sbjct: 98  KDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAM--CGSPDDSRFVFDALRSKNLFQW 154

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N +I +YS +    +    F++++  +   P+ FT+P VIKA A +    +G A+HG+V+
Sbjct: 155 NAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVV 214

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           K+   +D+F+ N+L+ FY   G +  A  +F ++ ++++VSWNSMI  F   GF E++  
Sbjct: 215 KTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFL 274

Query: 227 LYREMEMEN----VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
           L  EM  EN      PD  T+V VL  CA++R++  G+                      
Sbjct: 275 LLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGK---------------------- 312

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
                                +H    K  +     L  +L+DMY+KCG +  A  +F  
Sbjct: 313 --------------------GVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM 352

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA--KVKPNAVTFTNVLCACSHSGLV 399
             +++V  W+TM+ GF+  G      D+  +M      VK + VT  N +  C H   +
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/520 (23%), Positives = 231/520 (44%), Gaps = 80/520 (15%)

Query: 35  QHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYA 91
            H  +P   +IK C  +  +     +H  +++TGL  D +  + L +    GT   +  A
Sbjct: 186 DHFTYPC--VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVS--FYGTHGFVTDA 241

Query: 92  REMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY---NSPYFPNEFTFPFVIKA 148
            ++FD +P+ NL +WN++IR +S +    +SF++  +++    +  + P+  T   V+  
Sbjct: 242 LQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPV 301

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            AR  +  +G+ +HG  +K   + +L ++N+L+  Y+ CG +  A  +F M   K+VVSW
Sbjct: 302 CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSW 361

Query: 209 NSMISGFVQGGFFEKAIELYREMEM--ENVKPDEVTMVAVLSAC---------------A 251
           N+M+ GF   G      ++ R+M    E+VK DEVT++  +  C               +
Sbjct: 362 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYS 421

Query: 252 KKRDLEFGRWPNEAL--------------SIFHELQLSKNVN------------------ 279
            K++  +      A                +FH ++ SK VN                  
Sbjct: 422 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR-SKTVNSWNALIGGHAQSNDPRLS 480

Query: 280 -------------PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326
                        PD FT  S+LSAC++L ++ +G ++H  + +  ++ + ++  S++ +
Sbjct: 481 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540

Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
           Y  CG L     +F  ++ + +  W+T+I G+   G    AL +F +M    ++   ++ 
Sbjct: 541 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600

Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-MVDMLGRAGLLDEAVEFIEKM 445
             V  ACS    +  GR        +  ++       C ++DM  + G + ++ +    +
Sbjct: 601 MPVFGACSLLPSLRLGRE--AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGL 658

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
                AS W A++    IH    LA+ A     E++   H
Sbjct: 659 KEKSTAS-WNAMIMGYGIH---GLAKEAIKLFEEMQRTGH 694



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 147/367 (40%), Gaps = 65/367 (17%)

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF-----TFPFVIKAAARLVQFRVGQAIHGM 164
           I  +  + +  +SF    + V +     + F         +++A+ +     +G+ IH +
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 165 VIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223
           V  S+   +D  +   +I  YA+CG    +  VF  +  K++  WN++IS + +      
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRN----- 164

Query: 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283
             ELY                                  +E L  F E+  + ++ PD F
Sbjct: 165 --ELY----------------------------------DEVLETFIEMISTTDLLPDHF 188

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T+  V+ ACA +  + IG+ +H  + K G+  + ++  +L+  Y   G +  AL++F  +
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248

Query: 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE----AKVKPNAVTFTNVLCACSHSGLV 399
             R++  W++MI  F+  G   E+  L   M E        P+  T   VL  C+    +
Sbjct: 249 PERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREI 308

Query: 400 DEGRMFFNQMEPVYGVVPGVK------HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
             G+        V+G    ++          ++DM  + G +  A + I KM        
Sbjct: 309 GLGK-------GVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA-QMIFKMNNNKNVVS 360

Query: 454 WGALLGA 460
           W  ++G 
Sbjct: 361 WNTMVGG 367


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 313/524 (59%), Gaps = 14/524 (2%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           + SL+KQC N+K L Q H  ML  GL  D    S+    C+   FS   Y+  +F    +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS--HYSHSIFTHKTR 101

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           P++Y +NT+I+A S+     ++ +++ +++ +   F + ++ PFV+KA  RL+   VG+ 
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRF-DTYSLPFVLKAVVRLLAIHVGRQ 160

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           IH   I +    D+ +  +LI  Y+ CG ++ A  +F  +  +DV  WN+M++G+ + G 
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            + A  L+  M   NV    ++  AV++  A+         PNEA+++F  +QL + V P
Sbjct: 221 VDNARHLFERMPERNV----ISWTAVIAGYAQMDR------PNEAITMFRRMQLEE-VEP 269

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           DE   ++ LSACA LGA+++G  IH  + K G+     L  +LIDMY KCG ++KALEVF
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVF 329

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             ++ + V  W++MI G A++G GREAL++FS M+  ++KPN +TF  +L AC H GLV+
Sbjct: 330 KNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVE 389

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
            GR +F  M   YG+ P ++HY CM+D+LGRAG L EA E +  MP    A +WG+LL A
Sbjct: 390 MGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAA 449

Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
            +IH + EL + A  HL+++EP N G   LLSNIYA   KW+    +RK MR +G+KK P
Sbjct: 450 ARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMP 509

Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           G S IEVN  +H+F+AG+  HP  + I+  L +J  + K   YV
Sbjct: 510 GGSCIEVNNRVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYV 553


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 335/569 (58%), Gaps = 36/569 (6%)

Query: 13  STPVISLPRHPNPTTLTVNNGHQHH----PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFF 68
           STP +S    P P+  T  N  Q      P    SL++ CKN K L Q+HT +++T L  
Sbjct: 6   STPYLS----PVPSKTTALNSQQKQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIK 61

Query: 69  DPYSASKLFTPCA-LGTFSSLEYAREMFDQIPQP-NLYTWNTLIRAYSSSAEPIQSFMIF 126
           + Y+  +L    A      SL YA+++FD +  P N + + T+I+AY++   P ++F  +
Sbjct: 62  EKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFY 121

Query: 127 LQLVYNSPY-FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
            +++ +  Y +PN+FTF +V  A ++      G+  H  +IK  FE  +   NSL+ FY 
Sbjct: 122 SRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYG 181

Query: 186 ICGDLAMAYC-VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
             G++ +    VF  I   DVVSWN +I+G+V+ G  ++A  L+ EM   +V    + +V
Sbjct: 182 KVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLV 241

Query: 245 AVLSAC-----------AKKRDL-----------EFGRWPNEALSIFHELQLSKNVNPDE 282
               A              KR+L           + G + ++AL +F E+Q++K V  DE
Sbjct: 242 GYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCY-SKALELFKEMQVAK-VKMDE 299

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
               ++LSACA+LGA+D G  +H  + K GIK++ +L+T+LIDMY+KCG +D A +VF  
Sbjct: 300 VIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQE 359

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
              + VFVWS+MI G AM+  G +A++LF++M E  ++P+ +T+ N+L AC+HSGLVD G
Sbjct: 360 TGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVG 419

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
              FN+M       P ++HY C+VD+LGRAGLL +A   +E MP+    ++W ALL ACK
Sbjct: 420 LQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACK 479

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
           +H NVEL E     L+++EP+N    VL SN+YA   +WD   +LR+ M+V G++K PGC
Sbjct: 480 LHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGC 539

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKL 551
           SSIE+NG +H+F++ + SHP  + IY  L
Sbjct: 540 SSIELNGAVHEFVSRDHSHPQSQVIYELL 568


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/651 (34%), Positives = 361/651 (55%), Gaps = 58/651 (8%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SLI  CK+   L+ +H  +LR G+      A++L +  +L    S +Y+  +F    + N
Sbjct: 34  SLIHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSL--LKSPDYSLSIFRNSEERN 90

Query: 103 LYTWNTLIRAYSSSAE---PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
            + +N LIR  + +A     ++ F++ L L       P+  TFPFV+K+ ++L    +G+
Sbjct: 91  PFVFNALIRGLTENARFECSVRHFILMLTLGVK----PDRLTFPFVLKSNSKLGFRWLGR 146

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICG------------------------------- 188
           A+H   +K+  + D F+  SL+  YA  G                               
Sbjct: 147 ALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGY 206

Query: 189 ----DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244
               D+ MA  +F  + +++  SW+++I G+V  G   +A +L+  M  +NV    V+  
Sbjct: 207 CRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNV----VSWT 262

Query: 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304
            +++  ++  D E       A+S + E+ L K + P+E+T  +VLSAC++ GA+  G++I
Sbjct: 263 TLINGFSQTGDYE------TAISTYFEM-LEKGLKPNEYTVAAVLSACSKSGALGSGIRI 315

Query: 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCG 364
           H  +   GIKL+  + TSL+DMY KCG +D A  VF  +  +D+  W+ MI G+A++G  
Sbjct: 316 HGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRF 375

Query: 365 REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            +A+  F +M  +  KP+ V F  VL AC +SG VD G  FF+ M   Y + P +KHY  
Sbjct: 376 HQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVL 435

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
           +VD+LGRAG LDEA E +E MPI P  + W AL  ACK H++    +    +LLEL+PE 
Sbjct: 436 VVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKS-NRTDIVLQNLLELDPEL 494

Query: 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLC 544
            G+ + L   +A  GK+ +V + R  ++    ++  GCS IE++ +++KF A + +H   
Sbjct: 495 RGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQA 554

Query: 545 KEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQ 604
           +EI  KL+ I++     GY+P     +  +EEE+ +E    +HSE+LA+  GL+   P  
Sbjct: 555 QEIRLKLEGIISLAIERGYIPGADWSIHDIEEEE-KESVTGIHSEKLALTLGLLRTAPGT 613

Query: 605 PIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            IRI+KNLR+CGDCH++ K +SK+  R ILLRD  +FHHF+ G+CSC DYW
Sbjct: 614 TIRIIKNLRICGDCHSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 13/236 (5%)

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           +  +PDE  F+S++  C    ++ +   +HA + ++G+ L+  +   L+   +   + D 
Sbjct: 23  RRASPDESHFISLIHTCKDTVSLRL---VHAHILRRGV-LSSRVAAQLVSCSSLLKSPDY 78

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +L +F   + R+ FV++ +I G         ++  F  M    VKP+ +TF  VL + S 
Sbjct: 79  SLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSK 138

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASV- 453
            G    GR         +         + +VDM  + G L+ A +  E+ P  +   S+ 
Sbjct: 139 LGFRWLGRALHAATLKNFVDCDSFVRVS-LVDMYAKTGQLNHAFQVFEETPDRIKKESIL 197

Query: 454 -WGALL-GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            W  L+ G C+  +     + A +    +   N G+   L   Y   G+ +   +L
Sbjct: 198 LWNVLVNGYCRAKD----MQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQL 249


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/687 (33%), Positives = 369/687 (53%), Gaps = 69/687 (10%)

Query: 33  GHQHHPHPVFSLIKQCKNIKQLK---QIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLE 89
           GH+ +PH   S +K   ++ + +    +H+ +++ G   + +  + L    A     S++
Sbjct: 141 GHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALIN--AYSVCGSVD 198

Query: 90  YAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149
            AR +F+ I   ++  W  ++  Y  +     S  +  ++  +  + PN +TF   +KA+
Sbjct: 199 SARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDG-FMPNNYTFDTALKAS 257

Query: 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN 209
             L  F   +++HG ++K+ +E D  +   L+  Y   GD++ A+ VF  + K DVV W+
Sbjct: 258 IGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWS 317

Query: 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW-------- 261
            MI+ F Q GF  KA++++  M    V P+E T+ ++L+ CA  +    G          
Sbjct: 318 FMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKV 377

Query: 262 ---------------------PNEALSIFHELQLSKNV---------------------- 278
                                 + A+ +F EL  SKNV                      
Sbjct: 378 GFDLDVYVSNALIDVYAKCEKMDTAVKLFAELS-SKNVVSWNTVIVGYENLGEGGKALNM 436

Query: 279 ---------NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
                    +  E TF S L ACA L +M++GVQ+H    K        ++ SLIDMY K
Sbjct: 437 FREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAK 496

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
           CG++  A  VF+ +++ DV  W+ +I+G++ +G GR+AL +F  M+ +  KPN +TF  V
Sbjct: 497 CGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGV 556

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L  CS++GL+D+G+  F  M   +G+ P ++HYTCMV + GR+G LD+A+  IE +P  P
Sbjct: 557 LSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEP 616

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              +W A+L A     N E A  +   +L++ P++    VLLSN+YA   +W NV+ +RK
Sbjct: 617 SVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRK 676

Query: 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
            M+  G+KKEPG S IE  G++H F  G S HP  K I   L+ +  +    GYVP+R+ 
Sbjct: 677 SMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNA 736

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQP-IRIVKNLRVCGDCHTVAKLISKL 628
           +L  +++E+ +++ L +HSERLA+AYGL+ +  S+  I I+KNLR+C DCH+  K+IS +
Sbjct: 737 VLLDMDDEE-KDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSI 795

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
             R++++RD  RFHHF  G CSC D+W
Sbjct: 796 VQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 272 LQLSKNVNP--DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
           +Q S +V P  D   + ++L  C +         IH  + K+G  L+ + T  L++ Y K
Sbjct: 37  VQWSDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVK 96

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G    AL +F  +  R+   + T+  G+A     ++ + L+SR+     + N   FT+ 
Sbjct: 97  AGFDKDALNLFDEMPERNNVSYVTLTQGYAC----QDPVGLYSRLHREGHELNPHVFTSF 152

Query: 390 L 390
           L
Sbjct: 153 L 153


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 310/534 (58%), Gaps = 51/534 (9%)

Query: 126 FLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185
              L++ S    ++ T     KA   LV    G+ IH   IK+ F+ DL +++ ++  Y 
Sbjct: 17  LFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYI 76

Query: 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
            CGD+  A  VF  I                                     PD+V   +
Sbjct: 77  KCGDMVNAGIVFNYISA-----------------------------------PDDVAWTS 101

Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
           ++S C    +       ++AL I+H ++ S+ V PDE+TF +++ A + + A++ G Q+H
Sbjct: 102 MISGCVDNGN------EDQALRIYHRMRQSR-VMPDEYTFATLIKASSCVTALEQGRQLH 154

Query: 306 AKMKKQGIKLNC----YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
           A +    IKL+C    ++ TSL+DMY KCGN++ A  +F  +  R++ +W+ M+ G A +
Sbjct: 155 ANV----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 210

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G   EA++LF  M+   ++P+ V+F  +L ACSH+GL  E   + + M   YG+ P ++H
Sbjct: 211 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEH 270

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y+C+VD LGRAGL+ EA + IE MP    AS+  ALLGAC+I  +VE  +   + L  LE
Sbjct: 271 YSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALE 330

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P +  A VLLSNIYA   +WD+V++ RK M+   +KK+PG S I+V   +H F+  + SH
Sbjct: 331 PFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSH 390

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P    IY K++E++  ++  GYVP+   +L  VE+E+ +E++L  HSE+LAIAYGLIS  
Sbjct: 391 PQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE-KERSLYYHSEKLAIAYGLISTP 449

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            S  IR++KNLRVCGDCH   K ISK++ REI+LRD  RFHHFR G CSC DYW
Sbjct: 450 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 15/249 (6%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
           + Q KQIH   ++ G   D +  S    ++  C       +  A  +F+ I  P+   W 
Sbjct: 46  LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG-----DMVNAGIVFNYISAPDDVAWT 100

Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
           ++I     +    Q+  I+ ++   S   P+E+TF  +IKA++ +     G+ +H  VIK
Sbjct: 101 SMISGCVDNGNEDQALRIYHRM-RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 159

Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
                D F+  SL+  YA CG++  AY +F  +  +++  WN+M+ G  Q G  E+A+ L
Sbjct: 160 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 219

Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
           ++ M+   ++PD V+ + +LSAC+           +EA    H +     + P+   +  
Sbjct: 220 FKSMKSHGIEPDRVSFIGILSACSH------AGLTSEAYEYLHSMPNDYGIEPEIEHYSC 273

Query: 288 VLSACAQLG 296
           ++ A  + G
Sbjct: 274 LVDALGRAG 282



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 17/220 (7%)

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
            G    +AL +F  +  S     D+ T  +   AC  L  +D G QIHA   K G   + 
Sbjct: 7   IGNDGKKALELFSLIHKSGE-KSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 65

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           ++ + ++DMY KCG++  A  VF+ + + D   W++MI+G    G   +AL ++ RM+++
Sbjct: 66  HVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQS 125

Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM-------EPVYGVVPGVKHYTCMVDMLG 430
           +V P+  TF  ++ A S    +++GR     +       +P  G        T +VDM  
Sbjct: 126 RVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--------TSLVDMYA 177

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
           + G +++A    +KM  V   ++W A+L     H N E A
Sbjct: 178 KCGNIEDAYRLFKKMN-VRNIALWNAMLVGLAQHGNAEEA 216


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 334/603 (55%), Gaps = 47/603 (7%)

Query: 54  LKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           LK++H   L+    ++   A+      A     SL YA+ +F  I    + +WN LI  +
Sbjct: 164 LKELHCYSLKQEFVYNELVANAFVASYA--KCGSLSYAQRVFHGIRSKTVNSWNALIGGH 221

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           + S +P  S    LQ+   S   P+ FT   ++ A ++L   R+G+ +HG +I++  E D
Sbjct: 222 AQSNDPRLSLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           LF+  S++  Y  CG+L     +F  +  K +VSWN++I+G++Q GF ++A+ ++R+M +
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             ++   ++M+ V  AC+    L  GR                                 
Sbjct: 341 YGIQLCGISMMPVFGACSLLPSLRLGR--------------------------------- 367

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                    + HA   K  ++ + ++  SLIDMY K G++ ++ +VF+ +K +    W+ 
Sbjct: 368 ---------EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 418

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           MI G+ ++G  +EA+ LF  MQ     P+ +TF  VL AC+HSGL+ EG  + +QM+  +
Sbjct: 419 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSF 478

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIHENVELAEY 472
           G+ P +KHY C++DMLGRAG LD+A+  + E+M       +W +LL +C+IH+N+E+ E 
Sbjct: 479 GLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEK 538

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
             + L ELEPE     VLLSN+YA  GKW++V ++R+ M    L+K+ GCS IE+N ++ 
Sbjct: 539 VAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 598

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F+ GE      +EI S    +  ++   GY P+   +   + EE+  EQ L  HSE+LA
Sbjct: 599 SFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQ-LRGHSEKLA 657

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           + YGLI       IR+ KNLR+C DCH  AKLISK+  REI++RD  RFHHF+ G CSC 
Sbjct: 658 LTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCG 717

Query: 653 DYW 655
           DYW
Sbjct: 718 DYW 720



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 47/298 (15%)

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVY---NSPYFPNEFTFPFVIKAAARLVQFRVG 158
           N  +WN++IR +S +    +SF++  +++    +  + P+  T   V+   AR  +  +G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG  +K   + +L ++N+L+  Y+ CG +  A  +F M   K+VVSWN+M+ GF   
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 219 GFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
           G      ++ R+M    E+VK DEVT++  +  C                  FHE     
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC------------------FHE----- 158

Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
                  +F+  L             ++H    KQ    N  +  + +  Y KCG+L  A
Sbjct: 159 -------SFLPSLK------------ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYA 199

Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394
             VFH ++S+ V  W+ +I G A     R +LD   +M+ + + P++ T  ++L ACS
Sbjct: 200 QRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 257



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 48/203 (23%)

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMEN----VKPDEVTMVAVLSACAKKRDLEF 258
           ++ VSWNSMI  F   GF E++  L  EM  EN      PD  T+V VL  CA++R++  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
           G+                                           +H    K  +     
Sbjct: 61  GK------------------------------------------GVHGWAVKLRLDKELV 78

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA- 377
           L  +L+DMY+KCG +  A  +F    +++V  W+TM+ GF+  G      D+  +M    
Sbjct: 79  LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 138

Query: 378 -KVKPNAVTFTNVLCACSHSGLV 399
             VK + VT  N +  C H   +
Sbjct: 139 EDVKADEVTILNAVPVCFHESFL 161


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/617 (34%), Positives = 338/617 (54%), Gaps = 51/617 (8%)

Query: 44  LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           L+K+C + K L   K++H+ +++ G   D   A+ L      G    +  AR +FDQI +
Sbjct: 30  LLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIE--MYGKCGGIAEARSVFDQIQE 87

Query: 101 PN--LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            N  + +WN +I AY+ +    ++  +F  +        N+ T    I A A L     G
Sbjct: 88  KNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEG-VIANQVTLINAIDACASLPSEEEG 146

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H + +    E D  +  SL++ +  C ++  A  VF  + +K++V+WN+M++ + Q 
Sbjct: 147 RIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQN 206

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
              +KAI+++R M++E V+                                         
Sbjct: 207 WQCKKAIQVFRFMDLEGVQ----------------------------------------- 225

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD  TF++++ ACA L A   G  +H  +   GI ++  L T+++  Y KCG LD A  
Sbjct: 226 -PDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARA 284

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F ++  ++   WS ++A +A  G   EA++L+  M +  ++ N +TF  +L ACSH+G 
Sbjct: 285 IFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGR 344

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             +G  +F  M   +GVVP  +HY  ++D+LGR+G L  + + I  MP  P +S W ALL
Sbjct: 345 SMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALL 404

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
           GAC++H +V+        + EL+PE+ G  +LLSN+Y+ TG+ D     RK MR+ G+ K
Sbjct: 405 GACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITK 464

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
           +PG SSIEV   +H+F+A +  HP    I+++++ + AR+K  GYV +   +L+ VEEE+
Sbjct: 465 QPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEE 524

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +EQ L  HSERLAIA+GLIS  P   + IVKNLRVC DCH   K ISK+  R+I++RD 
Sbjct: 525 -KEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDA 583

Query: 639 YRFHHFRGGNCSCMDYW 655
            RFHHF  G CSC DYW
Sbjct: 584 IRFHHFENGACSCGDYW 600



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343
           T+V +L  CA   A+  G ++H+ + K G   +  +   LI+MY KCG + +A  VF  +
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 344 --KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401
             K+ DV  W+ +I  +   G G+EAL LF  M    V  N VT  N + AC+     +E
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           GR+  + +     +       T +V+M G+   +D A    + +P
Sbjct: 146 GRI-VHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLP 189


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/636 (36%), Positives = 336/636 (52%), Gaps = 56/636 (8%)

Query: 30  VNNGHQHHPHPVFSLIKQC-----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT 84
           + +G   + + + S +K C      +I+  K +H   ++ GL  D    + L    A   
Sbjct: 134 LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYA--K 191

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYF-PNEF 140
              LE A ++F  +P PN+  +N +I  +    + A+   +  ++L     S    P+EF
Sbjct: 192 IGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEF 251

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++KA + +  F  G+ IH  + K + + D FI N+L+  Y++ G +      F   
Sbjct: 252 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 311

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            K DVVSW S+I G VQ G FE                                      
Sbjct: 312 PKLDVVSWTSLIVGHVQNGQFEGG------------------------------------ 335

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                L++FHEL  S    PDEFT   +LSACA L A+  G QIHA   K GI     + 
Sbjct: 336 -----LTLFHELLFSGR-KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQ 389

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            S I MY KCG++D A   F   K+ D+  WS MI+  A +GC +EA+DLF  M+ + + 
Sbjct: 390 NSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIA 449

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN +TF  VL ACSH GLV+EG  +F  M+  +G+ P VKH  C+VD+LGRAG L EA  
Sbjct: 450 PNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAES 509

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           FI          +W +LL AC++H+  +  +     ++ELEPE   + VLL NIY   G 
Sbjct: 510 FIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGI 569

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
               +E+R  M+  G+KKEPG S IEV   +H F+AG+ SHP  + IY +L+E++  +K 
Sbjct: 570 QMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKK 629

Query: 561 FGYVPNRSHLLQLVEEEDVQEQAL-NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             Y+  +  L+    E   ++ ++ + HSE+LA+ +G+IS+  S P+R++KNLR C  CH
Sbjct: 630 LDYIDEK--LVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCH 687

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              KL S+L NREI+LRD  RFH FR G+CSC DYW
Sbjct: 688 ETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 174/411 (42%), Gaps = 76/411 (18%)

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +P+ N+ +WN+LI  Y+         M   +    S    ++FTF   +    R +  R+
Sbjct: 1   MPKRNVVSWNSLISGYTQMG-FYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRL 59

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH ++  S     + ++NSLI  Y  CG +  A  VF    + D VSWNS+I+G+V+
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSAC--------------------------- 250
            G  ++ + L  +M    +  +   + + L AC                           
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 251 ----------AKKRDLE-----FGRWPNEALSIFHELQ---LSKNVNPDEF--------- 283
                     AK  DLE     F   P+  + +++ +    L      DEF         
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 284 ------------TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331
                       TF S+L AC+ + A + G QIHA++ K  ++ + ++  +L+++Y+  G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 332 NLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391
           +++  L+ FH+    DV  W+++I G    G     L LF  +  +  KP+  T + +L 
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD----MLGRAGLLDEA 438
           AC++   V  G          Y +  G+ ++T + +    M  + G +D A
Sbjct: 360 ACANLAAVKSGEQIH-----AYAIKTGIGNFTIIQNSQICMYAKCGDIDSA 405



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 46/261 (17%)

Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261
           K++VVSWNS+ISG+ Q GF+ + + L++E                    A+  DL     
Sbjct: 3   KRNVVSWNSLISGYTQMGFYHEVMNLFKE--------------------ARMSDLRL--- 39

Query: 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
                              D+FTF + LS C +   + +G  IHA +   G+     LT 
Sbjct: 40  -------------------DKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTN 80

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           SLIDMY KCG +D A  VF +    D   W+++IAG+   G   E L L  +M    +  
Sbjct: 81  SLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNL 140

Query: 382 NAVTFTNVLCACSH--SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
           N+    + L AC    S  ++ G+M       + G+   V   T ++D   + G L++A 
Sbjct: 141 NSYALGSALKACGSNFSSSIECGKMLHGCAVKL-GLDLDVVVGTALLDTYAKIGDLEDAT 199

Query: 440 EFIEKMPIVPGASVWGALLGA 460
           +  + MP  P   ++ A++  
Sbjct: 200 KIFKLMP-DPNVVMYNAMIAG 219



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           R+V  W+++I+G+   G   E ++LF   + + ++ +  TF+N L  C  +  +  GR+ 
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL- 62

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-GACKIH 464
            + +  V G+   V     ++DM  + G +D A    E    +   S W +L+ G  +I 
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVS-WNSLIAGYVRIG 121

Query: 465 ENVEL 469
            N E+
Sbjct: 122 SNDEM 126


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/619 (36%), Positives = 333/619 (53%), Gaps = 62/619 (10%)

Query: 48  CKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLY 104
           C +++  + IH   L  GL  D    + L   +T C      S E AR +F+ IP  N  
Sbjct: 336 CSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCG-----SPEEARHLFEGIP-GNAV 389

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA----RLVQFRVGQA 160
           +WNT+I   S   +  ++  +F Q +      P   T+  +++A A           G+ 
Sbjct: 390 SWNTMIAGSSQKGQMKRALELF-QRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF---VMIGKKDVVSWNSMISGFVQ 217
           +H  ++   +  +  I  +++  YA CG +  A   F    M  + DVVSWN++IS   Q
Sbjct: 449 LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQ 508

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  ++A+  +R M++  V                                         
Sbjct: 509 HGHGKRALGFFRRMDLHGVA---------------------------------------- 528

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
             P++ T V+VL ACA   A+  GV +H  ++  G++ N ++ T+L  MY +CG+L+ A 
Sbjct: 529 --PNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAR 586

Query: 338 EVFHTVK-SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           E+F  V   RDV +++ MIA ++  G   EAL LF RMQ+   +P+  +F +VL ACSH 
Sbjct: 587 EIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHG 646

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GL DEG   F  M   YG+ P   HY C VD+LGRAG L +A E I  M + P   VW  
Sbjct: 647 GLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKT 706

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGAC+ + +V+    A S + EL+P +  A V+LSNI A  GKWD  +E+R  M   GL
Sbjct: 707 LLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGL 766

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           +K+ G S IE+   +H+F+AG+ SHP  +EIY +L+ + A ++  GYVP+   +L+ V+E
Sbjct: 767 RKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDE 826

Query: 577 EDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLR 636
            + +E+ L  HSERLAIA G++S   +  +R++KNLRVC DCH   K ISK+ N+EI++R
Sbjct: 827 AE-KERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKIVNKEIVVR 884

Query: 637 DRYRFHHFRGGNCSCMDYW 655
           D +RFHHF  G+CSC DYW
Sbjct: 885 DTHRFHHFVDGSCSCGDYW 903



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 196/432 (45%), Gaps = 73/432 (16%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYS-ASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109
           + Q ++IH +++  GL  +  +   +L+  C      SL    E+F ++   +  +W T+
Sbjct: 45  LSQGRRIHARIVSLGLEEELGNHLLRLYLKC-----ESLGDVEEVFSRLEVRDEASWTTI 99

Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
           I AY+   +  ++  +F ++        +  TF  V+KA ARL     G++IH  +++S 
Sbjct: 100 ITAYTEHGQAKRAIWMFHRM-QQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESG 158

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
            E    ++N L+H Y  CG +A A  +F  + ++D+VSWN+ I+   Q G  + A+EL++
Sbjct: 159 LEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQ 217

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
            M++E V+P  +T+V  LS CAK R                                   
Sbjct: 218 RMQLEGVRPARITLVITLSVCAKIRQAR-------------------------------- 245

Query: 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349
                         IH+ +++ G++    ++T+L   Y + G+LD+A EVF     RDV 
Sbjct: 246 -------------AIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVV 292

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
            W+ M+  +A +G   EA  LF+RM    + P+ VT  N    CS         + F +M
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS--------LRFGRM 344

Query: 410 EPVYGVVPGVKH----YTCMVDMLGRAGLLDEAVEFIEKMP--------IVPGASVWGAL 457
                +  G+         ++DM  R G  +EA    E +P        ++ G+S  G +
Sbjct: 345 IHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSWNTMIAGSSQKGQM 404

Query: 458 LGACKIHENVEL 469
             A ++ + ++L
Sbjct: 405 KRALELFQRMQL 416



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 209/488 (42%), Gaps = 81/488 (16%)

Query: 42  FSLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
            +++K C  +  L Q   IH  ++ +GL      A+ L      G+   +  A  +F+++
Sbjct: 132 LAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLH--IYGSCGCVASAMLLFERM 189

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            + +L +WN  I A + S +   +  +F Q +      P   T    +   A++ Q R  
Sbjct: 190 ER-DLVSWNAAIAANAQSGDLDMALELF-QRMQLEGVRPARITLVITLSVCAKIRQAR-- 245

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
            AIH +V +S  E  L +S +L   YA  G L  A  VF    ++DVVSWN+M+  + Q 
Sbjct: 246 -AIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQH 304

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----------------- 261
           G   +A  L+  M  E + P +VT+V   + C+    L FGR                  
Sbjct: 305 GHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS---LRFGRMIHACALEKGLDRDIVLG 361

Query: 262 ------------PNEALSIF------------------------------HELQLSKNVN 279
                       P EA  +F                                +QL + + 
Sbjct: 362 NALLDMYTRCGSPEEARHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQL-EGMA 420

Query: 280 PDEFTFVSVLSACA----QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           P   T++++L A A    +  AM  G ++H+++   G      + T+++ MY  CG +D+
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDE 480

Query: 336 ALEVFH--TVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
           A   F    ++ R DV  W+ +I+  + +G G+ AL  F RM    V PN +T   VL A
Sbjct: 481 AAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDA 540

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
           C+ +  + EG +  + +    G+   V   T +  M GR G L+ A E  EK+ +     
Sbjct: 541 CAGAAALTEGVIVHDHLRH-SGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVV 599

Query: 453 VWGALLGA 460
           ++ A++ A
Sbjct: 600 IFNAMIAA 607



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
            V +L A      +  G +IHA++   G++    L   L+ +Y KC +L    EVF  ++
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RD   W+T+I  +  +G  + A+ +F RMQ+  V+ +AVTF  VL AC+  G + +GR 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDML----GRAGLLDEAVEFIEKM 445
                   + V  G++  + + ++L    G  G +  A+   E+M
Sbjct: 150 IH-----AWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM 189


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 314/567 (55%), Gaps = 43/567 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E AR++FD++P  + ++WN +I  Y S    +++  +F  +  N     N FT    + 
Sbjct: 145 IEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALA 204

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           AAA +   R G+ IHG +I+S  E D  +  +L+  Y  CG L  A  +F  +  KD+VS
Sbjct: 205 AAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVS 264

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
           W +MI                                         R  E GR   E  S
Sbjct: 265 WTTMI----------------------------------------HRCFEDGR-KKEGFS 283

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           +F +L +   V P+E+TF  VL+ACA L A  +G ++H  M + G     +  ++L+ +Y
Sbjct: 284 LFRDL-MGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVY 342

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +KCGN + A  VF+ +   D+  W+++I G+A  G    AL  F  +  +  KP+ +TF 
Sbjct: 343 SKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFV 402

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            VL AC+H+GLVD G  +F+ ++  +G+V    HY C++D+L R+G   EA   I+ MP+
Sbjct: 403 GVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPM 462

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W +LLG C+IH N+ELAE A   L ELEPEN    + LSNIYA  G W   +++
Sbjct: 463 KPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKV 522

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R  M   G+ K+PG S IE+  ++H FL G++SHP   +I+  L E+  ++K  GYV + 
Sbjct: 523 RNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADT 582

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           + +L  VEEE  +EQ +  HSE+LA+A+G+IS  P  PI++ KNLR C DCH   K ISK
Sbjct: 583 NFVLHDVEEEQ-KEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISK 641

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDY 654
           +  R+I++RD  RFH F  G+CSC DY
Sbjct: 642 IVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 12/322 (3%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+   +  +I A  R  +  +G+ +H     S+F   + ISN LIH YA CG L  A  +
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
           F  I +KD+ SWN+MISG+   G  E+A +L+ EM       D  +  AV+S    +   
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQ--- 173

Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316
               W  EAL +F  +Q +++ N + FT  S L+A A + ++  G +IH  + + G++L+
Sbjct: 174 ---GWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELD 230

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376
             + T+L+D+Y KCG+L++A  +F  +  +D+  W+TMI      G  +E   LF  +  
Sbjct: 231 EVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMG 290

Query: 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
           + V+PN  TF  VL AC+       G+     M  V G  P     + +V +  + G  +
Sbjct: 291 SGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRV-GYDPFSFAASALVHVYSKCGNTE 349

Query: 437 EAVEFIEKMPIVPGASVWGALL 458
            A     +MP  P    W +L+
Sbjct: 350 TARRVFNQMP-RPDLVSWTSLI 370



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 167/364 (45%), Gaps = 54/364 (14%)

Query: 52  KQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           ++ K+IH  ++R+GL  D    + L      G   SL  AR +FDQ+   ++ +W T+I 
Sbjct: 213 RRGKEIHGYLIRSGLELDEVVWTALLD--LYGKCGSLNEARGIFDQMADKDIVSWTTMIH 270

Query: 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE 171
                    + F +F  L+  S   PNE+TF  V+ A A L   ++G+ +HG + +  ++
Sbjct: 271 RCFEDGRKKEGFSLFRDLM-GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYD 329

Query: 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
              F +++L+H Y+ CG+   A  VF  + + D+VSW S+I G+ Q G  + A++ +  +
Sbjct: 330 PFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESL 389

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
                KPDE+T V VLSA                                          
Sbjct: 390 LRSGTKPDEITFVGVLSA------------------------------------------ 407

Query: 292 CAQLGAMDIGVQ-IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-DVF 349
           C   G +DIG++  H+  +K G+         +ID+  + G   +A  +   +  + D F
Sbjct: 408 CTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKF 467

Query: 350 VWSTMIAGFAMYGCGREALDLFSRMQEA--KVKP-NAVTFTNVLCACSHSGLVDEGRMFF 406
           +W++++ G  ++G     ++L  R  +A  +++P N  T+  +    +++GL  E     
Sbjct: 468 LWASLLGGCRIHG----NIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVR 523

Query: 407 NQME 410
           N M+
Sbjct: 524 NDMD 527


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/611 (34%), Positives = 344/611 (56%), Gaps = 55/611 (9%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQP---NLY 104
           +K+  Q H  + + GL    Y  S L   ++ C     S +E A ++ D +P     +++
Sbjct: 133 VKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRC-----SHVELALQVLDTVPGEHVNDIF 187

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           ++N+++ A   S    ++  +  ++V     + +  T+  V+   A++   ++G  +H  
Sbjct: 188 SYNSVLNALVESGRGEEAVEVLRRMVDECVAW-DHVTYVGVMGLCAQIRDLQLGLRVHAR 246

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           +++     D F+ + LI  Y  CG++  A  VF  +  ++VV W ++++ ++Q G+FE++
Sbjct: 247 LLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEES 306

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           + L+  M+ E   P+                                          E+T
Sbjct: 307 LNLFTCMDREGTLPN------------------------------------------EYT 324

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           F  +L+ACA + A+  G  +HA+++K G K +  +  +LI+MY+K G++D +  VF  + 
Sbjct: 325 FAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMI 384

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RD+  W+ MI G++ +G G++AL +F  M  A+  PN VTF  VL A SH GLV EG  
Sbjct: 385 YRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFY 444

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           + N +   + + PG++HYTCMV +L RAGLLDEA  F++   +      W  LL AC +H
Sbjct: 445 YLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVH 504

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            N +L       +L+++P + G   LLSN+YAK  +WD V  +RK MR   +KKEPG S 
Sbjct: 505 RNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASW 564

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQAL 584
           +++  +IH FL+  S+HP   +IY K+ +++A +K  GYVPN + +L  VE+E  +E  L
Sbjct: 565 LDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQ-KEGYL 623

Query: 585 NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHF 644
           + HSE+LA+AYGL+ +    PIRI+KNLR+C DCHT  KLISK+ NR I++RD  RFHHF
Sbjct: 624 SYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHF 683

Query: 645 RGGNCSCMDYW 655
           R G+C+C+D+W
Sbjct: 684 RDGSCTCLDHW 694



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 176/390 (45%), Gaps = 52/390 (13%)

Query: 72  SASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
           S   L+  C       L  AR +FD +P  N+ +WN L+  Y      ++  ++F  +V 
Sbjct: 55  SLVHLYVKCG-----QLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVS 109

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
                PNE+ F   + A +   + + G   HG++ K       ++ ++L+H Y+ C  + 
Sbjct: 110 LQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVE 169

Query: 192 MAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248
           +A  V   +  +   D+ S+NS+++  V+ G  E+A+E+ R M  E V  D V       
Sbjct: 170 LALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHV------- 222

Query: 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308
                                              T+V V+  CAQ+  + +G+++HA++
Sbjct: 223 -----------------------------------TYVGVMGLCAQIRDLQLGLRVHARL 247

Query: 309 KKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368
            + G+  + ++ + LIDMY KCG +  A  VF  +++R+V VW+ ++  +   G   E+L
Sbjct: 248 LRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESL 307

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
           +LF+ M      PN  TF  +L AC+    +  G +   ++E + G    V     +++M
Sbjct: 308 NLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL-GFKNHVIVRNALINM 366

Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
             ++G +D +      M I      W A++
Sbjct: 367 YSKSGSIDSSYNVFTDM-IYRDIITWNAMI 395



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 3/209 (1%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           V  L  Q ++++   ++H ++LR GL FD +  S L      G    +  AR +FD +  
Sbjct: 227 VMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLID--MYGKCGEVLNARNVFDGLQN 284

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
            N+  W  L+ AY  +    +S  +F  +       PNE+TF  ++ A A +   R G  
Sbjct: 285 RNVVVWTALMTAYLQNGYFEESLNLFTCMDREGT-LPNEYTFAVLLNACAGIAALRHGDL 343

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H  V K  F++ + + N+LI+ Y+  G +  +Y VF  +  +D+++WN+MI G+   G 
Sbjct: 344 LHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGL 403

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSA 249
            ++A++++++M      P+ VT + VLSA
Sbjct: 404 GKQALQVFQDMVSAEECPNYVTFIGVLSA 432


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 290/483 (60%), Gaps = 34/483 (7%)

Query: 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME 232
           D  +  +L+  +A CG +A    VF  I   D+ +WN+++S + +               
Sbjct: 390 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYAR--------------- 434

Query: 233 MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292
                              + RD+       +A+       LS  + P+E T V+V+ AC
Sbjct: 435 ------------------LRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAVIGAC 476

Query: 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWS 352
            +LGA+  GV  H    K+ + +NC + T+L++MY  CG LD A +VF     RD   ++
Sbjct: 477 GELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYN 536

Query: 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
            M+ G A++G GR AL LF RM    V  + VT  +V+CAC+H+GLVDEG  +F++ME  
Sbjct: 537 AMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIE 596

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           +G+ P ++HY CMVDML RAG L++A + I  MPIVP A+++ +L+ AC IH  +EL + 
Sbjct: 597 FGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKK 656

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
             + L+ LEP++ G  VL+SN YA T +WD+  + RK M+  G+ K PG S +++NG +H
Sbjct: 657 MIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLH 716

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
           +FL G+ +HP  KEIY+ +++I  RL   G+  + S  L  VEEED +  AL+ HSERLA
Sbjct: 717 EFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSALFDVEEED-KADALSYHSERLA 775

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+ LI+  P  PIRI+KNLRVC DCH  AKL+S++Y REI++RDR RFHHFR G CSC 
Sbjct: 776 IAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCG 835

Query: 653 DYW 655
           D+W
Sbjct: 836 DFW 838



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 50/261 (19%)

Query: 92  REMFDQIPQPNLYTWNTLIRAY-----------SSSAEPI-QSFMIFLQLVYNSPYFPNE 139
           R++FD+I  P+L  WN L+ AY           SS+A+ I + F+  L L       PNE
Sbjct: 411 RKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIK----PNE 466

Query: 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM 199
            T   VI A   L     G   H   +K     +  ++ +L+  YA CG L +A  VF  
Sbjct: 467 ITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAA 526

Query: 200 IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA-------- 251
              +D   +N+M+ G    G    A+ L+  M  E V  D VT+++V+ ACA        
Sbjct: 527 ASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEG 586

Query: 252 ----KKRDLEFGRWP------------------NEALSIFHELQLSKNVNPDEFTFVSVL 289
                + ++EFG  P                  N+A  + H +     + P+   + S++
Sbjct: 587 LDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMP----IVPNAAIYRSLI 642

Query: 290 SACAQLGAMDIGVQIHAKMKK 310
            AC   G +++G ++ A++ +
Sbjct: 643 RACGIHGKLELGKKMIAELMR 663


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 313/520 (60%), Gaps = 14/520 (2%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           SL+  C++   L QIH  ML   L  D    S+    C     SS  YA  +F     P+
Sbjct: 29  SLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSS--YAFSIFSNKTHPD 86

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
           L  +NT I+A S ++ PI +  ++ ++  +    P+ ++ P V+KA  +L    VG+ IH
Sbjct: 87  LRLYNTAIKALSKTSSPINAIWLYTRIRIDG-LRPDSYSIPSVLKAVVKLSAVEVGRQIH 145

Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE 222
              + S+ + D+ ++ SLI  Y+ CG ++ A  +F  +G KDV  WN+M++G+V+ G  +
Sbjct: 146 TQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELK 205

Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
            A +++ EM   NV    ++   +++  A+         P+EA+ +F ++QL + V PDE
Sbjct: 206 SARKVFNEMPQRNV----ISWTTLIAGYAQTNR------PHEAIELFRKMQL-EEVEPDE 254

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
              ++VLSACA LGA+++G  IH  ++K G+     L  +LIDMY K GN+ +ALEVF  
Sbjct: 255 IAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFEN 314

Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           +K + V  WST+IA  A++G G EA+D+F RM++AKV+PN VTF  +L ACSH G+VD G
Sbjct: 315 MKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVG 374

Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
           R +F+QM+ +Y + P ++HY CM+D+L RAG L EA + +  MP    A +WG+LL A  
Sbjct: 375 RYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASN 434

Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
            H + ELA+ A  HL +LEP N G  VLLSN YA  GKW+    +RK MR +G+KK PG 
Sbjct: 435 THRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGG 494

Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           S IE+N  +++FLAG+ S     EIY  L +I+ +LK  G
Sbjct: 495 SVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLKMAG 534


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 342/613 (55%), Gaps = 51/613 (8%)

Query: 50  NIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP---NLYTW 106
           ++  ++Q+H  ++  G  +D Y++              L  AR +F ++ +    +  +W
Sbjct: 154 DVGLVRQLHCFVVVCG--YDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSW 211

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N +I A     E +++  +F ++V       + FT   V+ A   +     G   HGM+I
Sbjct: 212 NAMIVACGQHREGLEAVELFREMVRRGLKV-DMFTMASVLTAFTCVKDLVGGMQFHGMMI 270

Query: 167 KSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           KS F  +  + + LI  Y+ C G +     VF  I   D+V WN+MISGF Q        
Sbjct: 271 KSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQ-------- 322

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
                   E++  D                   G W       F E+Q     +PD+ +F
Sbjct: 323 -------YEDLSED-------------------GIW------CFREMQ-HNGFHPDDCSF 349

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           V V SAC+ L +  +G Q+HA   K  I  N   +  +L+ MY+KCGN+  A  VF T+ 
Sbjct: 350 VCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP 409

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
             ++   ++MIAG+A +G   E+L LF  M +  + PN +TF  VL AC H+G V+EG+ 
Sbjct: 410 EHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQK 469

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           +FN M+  + + P  +HY+CM+D+LGRAG L EA   IE MP  PG+  W  LLGAC+ H
Sbjct: 470 YFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKH 529

Query: 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524
            NVELA  A +  L+LEP N    V+LSN+YA   +W+  + +++ MR  G+KK+PGCS 
Sbjct: 530 GNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSW 589

Query: 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN-RSHLLQLVE-EEDVQEQ 582
           IE++ ++H F+A ++SHP+ KEI+  + EI+ ++K  GYVP+ R  L++  E E D +E+
Sbjct: 590 IEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKER 649

Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
            L  HSE+LA+A+GLIS E   PI +VKNLR+CGDCH   KLIS +  REI +RD +RFH
Sbjct: 650 RLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFH 709

Query: 643 HFRGGNCSCMDYW 655
            F+ G+CSC DYW
Sbjct: 710 CFKEGHCSCGDYW 722



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 161/327 (49%), Gaps = 28/327 (8%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           L++ C      SL  A+  FD    PN++++NTLI AY+       S +   + V++   
Sbjct: 53  LYSKCG-----SLHNAQTSFDLTQYPNVFSYNTLINAYAK-----HSLIHLARQVFDEIP 102

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD----LA 191
            P+  ++  +I A A   + R    +   V +  F  D F  + +I     CGD    + 
Sbjct: 103 QPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVI---IACGDDVGLVR 159

Query: 192 MAYCVFVMIGKKDVVSW-NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
             +C  V+ G     S  N++++ + + GF  +A  ++REM  E    DEV+  A++ AC
Sbjct: 160 QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMG-EGGGRDEVSWNAMIVAC 218

Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
            + R+        EA+ +F E+ + + +  D FT  SVL+A   +  +  G+Q H  M K
Sbjct: 219 GQHRE------GLEAVELFREM-VRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIK 271

Query: 311 QGIKLNCYLTTSLIDMYTKC-GNLDKALEVFHTVKSRDVFVWSTMIAGFAMY-GCGREAL 368
            G   N ++ + LID+Y+KC G + +  +VF  + + D+ +W+TMI+GF+ Y     + +
Sbjct: 272 SGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGI 331

Query: 369 DLFSRMQEAKVKPNAVTFTNVLCACSH 395
             F  MQ     P+  +F  V  ACS+
Sbjct: 332 WCFREMQHNGFHPDDCSFVCVTSACSN 358



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 26/340 (7%)

Query: 136 FPNEF-TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194
           FP +  TF  ++KA         G+ +H +  KS      ++SN     Y+ CG L  A 
Sbjct: 5   FPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQ 64

Query: 195 CVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
             F +    +V S+N++I+ + +      A +++ E+     +PD V+   +++A A + 
Sbjct: 65  TSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIP----QPDIVSYNTLIAAYADRG 120

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQG 312
           +         AL +F E++       D FT   V+ AC      D+G+  Q+H  +   G
Sbjct: 121 ECR------PALRLFAEVR-ELRFGLDGFTLSGVIIACGD----DVGLVRQLHCFVVVCG 169

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGREALD 369
                 +  +++  Y++ G L++A  VF  +     RD   W+ MI     +  G EA++
Sbjct: 170 YDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVE 229

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-TCMVDM 428
           LF  M    +K +  T  +VL A +    +  G  F   M  +     G  H  + ++D+
Sbjct: 230 LFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMM--IKSGFHGNSHVGSGLIDL 287

Query: 429 LGR-AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
             + AG + E  +  E++   P   +W  ++     +E++
Sbjct: 288 YSKCAGGMVECRKVFEEIA-APDLVLWNTMISGFSQYEDL 326



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 47/227 (20%)

Query: 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK-------- 335
           TF ++L AC     +  G  +HA   K  I  + YL+     +Y+KCG+L          
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 336 -----------------------ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
                                  A +VF  +   D+  ++T+IA +A  G  R AL LF+
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 373 RMQEAKVKPNAVTFTNVLCACSHS-GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML-- 429
            ++E +   +  T + V+ AC    GLV +   F         VV G   Y  + + +  
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFV--------VVCGYDCYASVNNAVLA 182

Query: 430 --GRAGLLDEAVEFIEKMPIVPGAS--VWGALLGACKIH-ENVELAE 471
              R G L+EA     +M    G     W A++ AC  H E +E  E
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVE 229


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/636 (36%), Positives = 336/636 (52%), Gaps = 56/636 (8%)

Query: 30  VNNGHQHHPHPVFSLIKQC-----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGT 84
           + +G   + + + S +K C      +I+  K +H   ++ GL  D    + L    A   
Sbjct: 213 LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYA--K 270

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYF-PNEF 140
              LE A ++F  +P PN+  +N +I  +    + A+   +  ++L     S    P+EF
Sbjct: 271 IGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEF 330

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++KA + +  F  G+ IH  + K + + D FI N+L+  Y++ G +      F   
Sbjct: 331 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 390

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
            K DVVSW S+I G VQ G FE                                      
Sbjct: 391 PKLDVVSWTSLIVGHVQNGQFEGG------------------------------------ 414

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320
                L++FHEL  S    PDEFT   +LSACA L A+  G QIHA   K GI     + 
Sbjct: 415 -----LTLFHELLFSGR-KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQ 468

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
            S I MY KCG++D A   F   K+ D+  WS MI+  A +GC +EA+DLF  M+ + + 
Sbjct: 469 NSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIA 528

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           PN +TF  VL ACSH GLV+EG  +F  M+  +G+ P VKH  C+VD+LGRAG L EA  
Sbjct: 529 PNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAES 588

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           FI          +W +LL AC++H+  +  +     ++ELEPE   + VLL NIY   G 
Sbjct: 589 FIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGI 648

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
               +E+R  M+  G+KKEPG S IEV   +H F+AG+ SHP  + IY +L+E++  +K 
Sbjct: 649 QMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKK 708

Query: 561 FGYVPNRSHLLQLVEEEDVQEQAL-NLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCH 619
             Y+  +  L+    E   ++ ++ + HSE+LA+ +G+IS+  S P+R++KNLR C  CH
Sbjct: 709 LDYIDEK--LVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCH 766

Query: 620 TVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
              KL S+L NREI+LRD  RFH FR G+CSC DYW
Sbjct: 767 ETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 186/433 (42%), Gaps = 79/433 (18%)

Query: 76  LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY 135
           L+  C  G     + A+++FD++P+ N+ +WN+LI  Y+         M   +    S  
Sbjct: 61  LYMYCKCG---ETDVAKKLFDRMPKRNVVSWNSLISGYTQMG-FYHEVMNLFKEARMSDL 116

Query: 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
             ++FTF   +    R +  R+G+ IH ++  S     + ++NSLI  Y  CG +  A  
Sbjct: 117 RLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARL 176

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC----- 250
           VF    + D VSWNS+I+G+V+ G  ++ + L  +M    +  +   + + L AC     
Sbjct: 177 VFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFS 236

Query: 251 --------------------------------AKKRDLE-----FGRWPNEALSIFHELQ 273
                                           AK  DLE     F   P+  + +++ + 
Sbjct: 237 SSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMI 296

Query: 274 ---LSKNVNPDEF---------------------TFVSVLSACAQLGAMDIGVQIHAKMK 309
              L      DEF                     TF S+L AC+ + A + G QIHA++ 
Sbjct: 297 AGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIF 356

Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
           K  ++ + ++  +L+++Y+  G+++  L+ FH+    DV  W+++I G    G     L 
Sbjct: 357 KYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLT 416

Query: 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM---- 425
           LF  +  +  KP+  T + +L AC++   V  G          Y +  G+ ++T +    
Sbjct: 417 LFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIH-----AYAIKTGIGNFTIIQNSQ 471

Query: 426 VDMLGRAGLLDEA 438
           + M  + G +D A
Sbjct: 472 ICMYAKCGDIDSA 484



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 151/336 (44%), Gaps = 56/336 (16%)

Query: 134 PYFPNEFTFPFVIKAAARLVQ--FRVGQAIHGMV-----IKSSFEDDLFISNSLIHFYAI 186
           PY+      P       +LVQ   R G  IHG +     IK+ F+  LF+ N+L++ Y  
Sbjct: 10  PYY---LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCK 66

Query: 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246
           CG+  +A  +F  + K++VVSWNS+ISG+ Q GF+ + + L++E  M +++ D+ T    
Sbjct: 67  CGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNA 126

Query: 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306
           LS C +  DL  GR                                           IHA
Sbjct: 127 LSVCGRTLDLRLGRL------------------------------------------IHA 144

Query: 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
            +   G+     LT SLIDMY KCG +D A  VF +    D   W+++IAG+   G   E
Sbjct: 145 LITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDE 204

Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCAC--SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424
            L L  +M    +  N+    + L AC  + S  ++ G+M       + G+   V   T 
Sbjct: 205 MLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKL-GLDLDVVVGTA 263

Query: 425 MVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
           ++D   + G L++A +  + MP  P   ++ A++  
Sbjct: 264 LLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 298



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 3/190 (1%)

Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
           D  T+  ++    + G++  G   H  M K   K   +L  +L+ MY KCG  D A ++F
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
             +  R+V  W+++I+G+   G   E ++LF   + + ++ +  TF+N L  C  +  + 
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLR 137

Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL-G 459
            GR+  + +  V G+   V     ++DM  + G +D A    E    +   S W +L+ G
Sbjct: 138 LGRL-IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVS-WNSLIAG 195

Query: 460 ACKIHENVEL 469
             +I  N E+
Sbjct: 196 YVRIGSNDEM 205


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 343/602 (56%), Gaps = 46/602 (7%)

Query: 39  HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
           H +  L  +   + + K  H +++R  L  D    + L    +   F  +E AR++FD +
Sbjct: 57  HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGF--VELARQVFDGM 114

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
            + +L +WNT+I  Y+ +    ++  IFL++  N  +  +EFT   V+ A          
Sbjct: 115 LERSLVSWNTMIGLYTRNRMESEALDIFLEM-RNEGFKFSEFTISSVLSACGVNCDALEC 173

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +H + +K+  + +L++  +L+  YA CG +  A  VF  +  K  V+W+SM++G+VQ 
Sbjct: 174 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 233

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
             +E+A+ LYR                     A++  LE                     
Sbjct: 234 KNYEEALLLYRR--------------------AQRMSLE--------------------- 252

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
             ++FT  SV+ AC+ L A+  G Q+HA + K G   N ++ +S +DMY KCG+L ++  
Sbjct: 253 -QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYI 311

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F  V+ +++ +W+T+I+GFA +   +E + LF +MQ+  + PN VTF+++L  C H+GL
Sbjct: 312 IFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGL 371

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           V+EGR FF  M   YG+ P V HY+CMVD+LGRAGLL EA E I+ +P  P AS+WG+LL
Sbjct: 372 VEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 431

Query: 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518
            +C++++N+ELAE A   L ELEPEN G  VLLSNIYA   +W+ +++ RK +R   +KK
Sbjct: 432 ASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKK 491

Query: 519 EPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED 578
             G S I++  ++H F  GES HP  +EI S LD +V + + FGY P+  H L  VE   
Sbjct: 492 VRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGK 551

Query: 579 VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
            +E+ L  HSE+LA+ +GL+ +  S P+RI+KNLR+C DCH   K  S    R I++RD 
Sbjct: 552 -KEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDV 610

Query: 639 YR 640
            R
Sbjct: 611 NR 612



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 49/309 (15%)

Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
           S  F N      +++  AR       +A HG +I+   E D+ + N LI+ Y+ CG + +
Sbjct: 47  SNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVEL 106

Query: 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
           A  VF  + ++ +VSWN+MI  + +     +A++++ EM  E  K  E T+ +VLSAC  
Sbjct: 107 ARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG- 165

Query: 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312
                                    VN D          C +L  + +         K  
Sbjct: 166 -------------------------VNCDALE-------CKKLHCLSV---------KTC 184

Query: 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372
           I LN Y+ T+L+D+Y KCG +  A++VF +++ +    WS+M+AG+       EAL L+ 
Sbjct: 185 IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 244

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPGVKHYTCMVDML 429
           R Q   ++ N  T ++V+CACS+   + EG+    QM  V    G    V   +  VDM 
Sbjct: 245 RAQRMSLEQNQFTLSSVICACSNLAALIEGK----QMHAVICKSGFGSNVFVASSAVDMY 300

Query: 430 GRAGLLDEA 438
            + G L E+
Sbjct: 301 AKCGSLRES 309



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 122/236 (51%), Gaps = 12/236 (5%)

Query: 31  NNGHQHHPHPVFSLIKQCK---NIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGT 84
           N G +     + S++  C    +  + K++H   ++T +  + Y  +    L+  C +  
Sbjct: 147 NEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM-- 204

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
              ++ A ++F+ +   +  TW++++  Y  +    ++ +++ +    S    N+FT   
Sbjct: 205 ---IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS-LEQNQFTLSS 260

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           VI A + L     G+ +H ++ KS F  ++F+++S +  YA CG L  +Y +F  + +K+
Sbjct: 261 VICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKN 320

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
           +  WN++ISGF +    ++ + L+ +M+ + + P+EVT  ++LS C     +E GR
Sbjct: 321 LELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 376


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 331/609 (54%), Gaps = 53/609 (8%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLYTW 106
           I+  K +H   +R G          +F   AL      F  +  AR++F+ + + N+ TW
Sbjct: 138 IRIAKSVHCFWVRGGF------EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTW 191

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
           N ++  YS      ++  +F  L+       + +T   +I A+  +   +VG  IHG +I
Sbjct: 192 NAIVSGYSDHGFSEEAIDLF-NLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFII 250

Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
           ++ +E+D  I  +L+  Y     +  A+ VF  +  KDV +W  M++GF  G  +++AI+
Sbjct: 251 RTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIK 310

Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
            +                                  N+ L I       +N+  D    +
Sbjct: 311 HF----------------------------------NKMLGI-------QNLKLDSIALM 329

Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
            +LS+C+  GA+  G ++HA   K     N ++ +++IDMY  CGNL+ A   F+ +  +
Sbjct: 330 GILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK 389

Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406
           DV  W+ MIAG  M G G +A+DLF +M+ + + P+  TF +VL ACSH+G+V EG   F
Sbjct: 390 DVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIF 449

Query: 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466
             M     V+P ++HY C++D+LGRAG LD A  FI  MP  P   V+  LLGAC+IH N
Sbjct: 450 YHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGN 509

Query: 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526
           ++L       + E+EP + G  VLLSN+YA  G W+ V   R  +R   +KK+PG SSIE
Sbjct: 510 IKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIE 569

Query: 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNL 586
           +N EI+ F+AGE  HP   +I   L  ++ ++K  GYVPN + LLQ V  +D+++  L  
Sbjct: 570 INQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDV-SDDMKKDILYH 628

Query: 587 HSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG 646
           HSE++AIA+GL+  +P   IRI KNLR C DCHT +K +SK++ R ++++D  RFH F+ 
Sbjct: 629 HSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQD 688

Query: 647 GNCSCMDYW 655
           G CSC DYW
Sbjct: 689 GVCSCRDYW 697



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 199/413 (48%), Gaps = 55/413 (13%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYARE 93
            PH   S++++ K++K L+QIH Q++ +GL  + + ++ L   +  C L     L  A++
Sbjct: 25  QPHA--SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGL-----LADAKQ 77

Query: 94  MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
           +F   P  N+ +W  LI   + +   +++  +F +++  + + PN  T   V+ A A L 
Sbjct: 78  IFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGN-FKPNAVTISSVLPAFANLG 136

Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
             R+ +++H   ++  FE ++F+  +L+  Y+  G + +A  +F  + +++VV+WN+++S
Sbjct: 137 LIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVS 196

Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
           G+   GF E+AI+L+  M  + +  D  T+                              
Sbjct: 197 GYSDHGFSEEAIDLFNLMRRKGLLVDFYTI------------------------------ 226

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
                       +S++ A   +G + +G  IH  + + G + + ++ T+L+D+Y     +
Sbjct: 227 ------------MSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCV 274

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCA 392
           D A  VF  +  +DV  W+ M+ GF+       A+  F++M   + +K +++    +L +
Sbjct: 275 DDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSS 334

Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           CSHSG + +GR   + +         +   + ++DM    G L++A  F   M
Sbjct: 335 CSHSGALQQGRR-VHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYG 362
           QIHA++   G+  N +L+ SL++ Y  CG L  A ++FH    ++V  W+ +I+G A   
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101

Query: 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKH 421
           C  EA+D+F  M     KPNAVT ++VL A ++ GL+   +        V G   G V  
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSV--HCFWVRGGFEGNVFV 159

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
            T +VDM  + G +  A +  E M        W A++     H
Sbjct: 160 ETALVDMYSKFGCMGVARQLFESMS-ERNVVTWNAIVSGYSDH 201


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 338/604 (55%), Gaps = 52/604 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA 112
           Q+H   +R G   + + AS L   ++   L     L  A  +FDQ+PQ +   W  +I  
Sbjct: 140 QLHCVGVRLGFDAELFVASNLADMYSKSGL-----LVEACRVFDQMPQKDAVAWTAMIDG 194

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172
           Y+ +     + + F  +        ++     V+ A+  L    + +AIH  V+KS FE 
Sbjct: 195 YAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQ 254

Query: 173 DLFISNSLIHFYAICGDLA-MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231
           ++ + N+L   YA   D+   A  V +  G  +VVS  S+I G+++    EKA+ ++ E+
Sbjct: 255 EVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIEL 314

Query: 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291
             +                                           V P+EFTF S++  
Sbjct: 315 RRQG------------------------------------------VEPNEFTFSSMIKG 332

Query: 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351
           CA    ++ G Q+HA++ K  +  + +++++L+DMY KCG +  ++++F  ++      W
Sbjct: 333 CAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAW 392

Query: 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411
           +  I   A +G GREA+  F RM  + ++PN +TF ++L ACSH+GLVDEG  +F  M+ 
Sbjct: 393 NAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKD 452

Query: 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAE 471
            +G+ P  +HY+C++DM GRAG LDEA +FI +MP+ P A  W +LLGAC++  N EL E
Sbjct: 453 HHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGE 512

Query: 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEI 531
            A  ++++LEP+N G  V LS IYA  G+W++V  +RK MR + +KK PG S ++ N + 
Sbjct: 513 IAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKT 572

Query: 532 HKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERL 591
           H F + + SHP  ++IY KL+E+  R+K  GYVP+ +  L    E+  +++ L  HSER+
Sbjct: 573 HVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPD-TRFLPCNLEDTAKQRILRYHSERI 631

Query: 592 AIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSC 651
           A+A+ LIS+  ++PI + KNLR+C DCH+  K ISK+ NR+I++RD  RFHHF  G CSC
Sbjct: 632 AVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSC 691

Query: 652 MDYW 655
            DYW
Sbjct: 692 GDYW 695



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 49/302 (16%)

Query: 146 IKAAARLVQFRVGQAIHG-MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
           +++  R    R+G+ +H  +V+  +     F++N LI  Y+ C D+  A  +F  + + +
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
           +VSW +++SG  Q      A+  +  M                                 
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSM--------------------------------- 110

Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
                        + P +F   S   A A L A   G Q+H    + G     ++ ++L 
Sbjct: 111 ---------CRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLA 161

Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNA 383
           DMY+K G L +A  VF  +  +D   W+ MI G+A  G    A+  F  M +E  V  + 
Sbjct: 162 DMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQ 221

Query: 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVY--GVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
               +VL A   SG + +G +       V   G    V     + DM  +A  +D A   
Sbjct: 222 HVLCSVLSA---SGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARV 278

Query: 442 IE 443
           ++
Sbjct: 279 VK 280



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           L +C + G + +G  +HA++   G    + +L   LI MY+ C ++  A+ +F  +   +
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+T+++G       R+AL  FS M  A + P     ++   A +             
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAAR----HAGA 139

Query: 408 QMEPVYGVVPGVKH----YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463
           Q+  V GV  G        + + DM  ++GLL EA    ++MP    A  W A++     
Sbjct: 140 QLHCV-GVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMP-QKDAVAWTAMIDGYAK 197

Query: 464 HENVELAEYA 473
           + N+E A  A
Sbjct: 198 NGNLEAAVIA 207


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 334/622 (53%), Gaps = 57/622 (9%)

Query: 43  SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN 102
           ++I++C +  Q+KQ+ +  L  G F   +  S+L   CA+  F  L +A ++F  IP+P 
Sbjct: 8   TMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPL 67

Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-----NEFTFPFVIKAAARLVQFRV 157
              WN +IR ++ S+ P  +F  +  ++  S         +  T  F +KA AR +    
Sbjct: 68  TNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSA 127

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
              +H  + +     D  +  +L+  Y+  GDL  AY +F  +  +DV SWN++I+G V 
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVS 187

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
           G                                            +EA+ ++  ++ ++ 
Sbjct: 188 GNR-----------------------------------------ASEAMELYKRME-TEG 205

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           +   E T V+ L AC+ LG +  G  I           N  ++ + IDMY+KCG +DKA 
Sbjct: 206 IRRSEVTVVAALGACSHLGDVKEGENIFHGYSND----NVIVSNAAIDMYSKCGFVDKAY 261

Query: 338 EVFHT-VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396
           +VF      + V  W+TMI GFA++G    AL++F ++++  +KP+ V++   L AC H+
Sbjct: 262 QVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHA 321

Query: 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           GLV+ G   FN M    GV   +KHY C+VD+L RAG L EA + I  M ++P   +W +
Sbjct: 322 GLVEYGLSVFNNM-ACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQS 380

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LLGA +I+ +VE+AE A   + E+   N G  VLLSN+YA  G+W +V  +R  M    +
Sbjct: 381 LLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQV 440

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEE 576
           KK PG S IE  G IH+F   + SH   +EIY K+DEI  +++  GYV     +L  + E
Sbjct: 441 KKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGE 500

Query: 577 EDVQEQALNLHSERLAIAYGLI---SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREI 633
           E+ +E AL  HSE+LA+AYGL+     +   P+R++ NLR+CGDCH V K ISK+Y REI
Sbjct: 501 EE-KENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREI 559

Query: 634 LLRDRYRFHHFRGGNCSCMDYW 655
           ++RDR RFH F+ G+CSC D+W
Sbjct: 560 IVRDRVRFHRFKDGSCSCRDFW 581


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 336/618 (54%), Gaps = 80/618 (12%)

Query: 43  SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFS-SLEYAREMFDQI 98
           S+ K C  ++     K +H   L++    D Y    L     L T S  ++ AR  F++I
Sbjct: 245 SVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLD---LYTKSGDIDDARXAFEEI 301

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P+ ++  W+ +I  Y+ S +  ++  +F Q+   +   PN+FTF  V++A A +    +G
Sbjct: 302 PKKDVIPWSFMIARYAQSDQSKEAVEMFFQM-RQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GKKDVVSWNSMISGFVQ 217
             IH  VIK     D+F+SN+L+  YA CG +  +  +F     + DV  WN++I G VQ
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQ 420

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G  EKA+ L+  M                                          L   
Sbjct: 421 LGDGEKALRLFLNM------------------------------------------LEYR 438

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
           V   E T+ S L ACA L A++ G+QIH+   K     +  +T +LIDMY KCG++  A 
Sbjct: 439 VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDAR 498

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
            VF  +  +D   W+ MI+G++M+G                             AC+++G
Sbjct: 499 LVFDLMNKQDEVSWNAMISGYSMHGL----------------------------ACANAG 530

Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
           L+D+G+ +F  M   +G+ P ++HYTCMV +LGR G LD+AV+ I+++P  P   VW AL
Sbjct: 531 LLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRAL 590

Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
           LGAC IH ++EL   +  H+LE+EP++    VLLSN+YA   +WDNV+ +RK+M+  G+K
Sbjct: 591 LGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVK 650

Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
           KEPG S IE  G +H F  G++SHP  + I   L+ +  + K  GY+PN + +L  VE+E
Sbjct: 651 KEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDE 710

Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
           + +E+ L +HSERLA+++G+I      PIRI+KNLR+C DCH   K ISK+  REI++RD
Sbjct: 711 E-KERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRD 769

Query: 638 RYRFHHFRGGNCSCMDYW 655
             RFHHF+ G CSC DYW
Sbjct: 770 INRFHHFQEGLCSCGDYW 787



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 192/404 (47%), Gaps = 46/404 (11%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K +H ++L+ G   D ++ + L        F  L  A ++FD++P+ N  ++ TLI+ Y+
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDF--LCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            S   +++  +F++L +   +  N F F  ++K    +    +G  IH  + K   E + 
Sbjct: 116 ESVRFLEAIELFVRL-HREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNA 174

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F+  +LI  Y++CG + +A  VF  I  KD+VSW  M++ F +   F++A++L+ +M M 
Sbjct: 175 FVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMV 234

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
             K                                          P+ FTF SV  AC  
Sbjct: 235 GFK------------------------------------------PNNFTFASVFKACLG 252

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
           L A D+G  +H    K   +L+ Y+  +L+D+YTK G++D A   F  +  +DV  WS M
Sbjct: 253 LEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFM 312

Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
           IA +A     +EA+++F +M++A V PN  TF +VL AC+    ++ G      +  + G
Sbjct: 313 IARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI-G 371

Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458
           +   V     ++D+  + G ++ ++    + P     + W  ++
Sbjct: 372 LHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 187/440 (42%), Gaps = 94/440 (21%)

Query: 107 NTLIRAYSSSAEPIQSFMIFLQLV-YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           N LIR +S     +QS  +  + V + SP   N   +   ++   +  +   G+ +H  +
Sbjct: 6   NFLIR-FSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 166 IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225
           +K     DLF  N L++ Y     L  A  +F  + +++ +S+ ++I G+ +   F +AI
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285
           EL+  +  E                                   HEL      NP  F F
Sbjct: 125 ELFVRLHREG----------------------------------HEL------NP--FVF 142

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
            ++L     +   ++G  IHA + K G + N ++ T+LID Y+ CG +D A EVF  +  
Sbjct: 143 TTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILY 202

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC------------ 393
           +D+  W+ M+  FA   C +EAL LFS+M+    KPN  TF +V  AC            
Sbjct: 203 KDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSV 262

Query: 394 -----------------------SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430
                                  + SG +D+ R  F ++ P   V+P    ++ M+    
Sbjct: 263 HGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEI-PKKDVIP----WSFMIARYA 317

Query: 431 RAGLLDEAVEFIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           ++    EAVE   +M    ++P    + ++L AC   E + L      H++++   +   
Sbjct: 318 QSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSD-- 375

Query: 488 LVLLSN----IYAKTGKWDN 503
            V +SN    +YAK G+ +N
Sbjct: 376 -VFVSNALMDVYAKCGRMEN 394


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/548 (37%), Positives = 321/548 (58%), Gaps = 31/548 (5%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+  +    ++A   L  F++G+ IHG +++S+   D+++  SL+  Y     L  A  V
Sbjct: 16  PDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDCLEKAQAV 75

Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--- 253
                 K+V +WNS+ISG+   G F +A++L  +M  E + PD VT   ++S  + +   
Sbjct: 76  LHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRI 135

Query: 254 --------RDLEFGRWPN------------------EALSIFHELQLSKNVNPDEFTFVS 287
                   R    G  PN                  +AL IF ++Q ++NV P+  T  S
Sbjct: 136 DEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ-AENVKPNSTTICS 194

Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
           +L ACA    +  G ++H    K G   + Y+ T+LIDMY++ G L  A  VF+ ++ + 
Sbjct: 195 LLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKT 254

Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
           +  W+ M+ G+A++  G E + L+ +M+E  ++P+A+TFT +L AC +SGLVDEG  +F+
Sbjct: 255 LPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFD 314

Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            M+  Y +VP ++HY CMVD+LG++G LDEA  FIE MPI P AS+WGALL +CKIH+N+
Sbjct: 315 SMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIHKNI 374

Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
           +LAE A   L ++EP N    VL+ N+Y+   +W  V  L+  M V  +K  P  S  +V
Sbjct: 375 KLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVLAMKIPPVWSWTQV 434

Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
           N  IH F      HP   EIY +L ++++ ++  GY P+ + + Q +++ + +E+ L  H
Sbjct: 435 NQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNIDDNE-KEKILMSH 493

Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
           +E+LA+ YG++ ++   PIRIVKN R+C DCHTVAK IS +  REILLRD  RFHHF+ G
Sbjct: 494 TEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREILLRDGGRFHHFKNG 553

Query: 648 NCSCMDYW 655
            C+C D W
Sbjct: 554 KCACNDRW 561



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L+ F  L  S    PD  +  S L A  +LG   +G +IH  + +  +  + Y+ TSL+D
Sbjct: 3   LTSFRSLH-SLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY K   L+KA  V H  K+++V  W+++I+G++  G   EA+ L ++M E  + P+ VT
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           +  ++   S  G +DE     N+++   G+ P V  +T ++    +     +A++   +M
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSS-GITPNVVSWTALISGCSQNEKYMDALKIFSQM 180

Query: 446 P---IVPGASVWGALLGAC 461
               + P ++   +LL AC
Sbjct: 181 QAENVKPNSTTICSLLCAC 199



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
           PN+ +W  LI   S + + + +  IF Q+   +   PN  T   ++ A A     + G+ 
Sbjct: 152 PNVVSWTALISGCSQNEKYMDALKIFSQMQAENVK-PNSTTICSLLCACAGPSLLKKGEE 210

Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
           +H   +K  F DD++++ +LI  Y+  G L +AY VF  I +K +  WN M+ G+     
Sbjct: 211 LHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSH 270

Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
            E+ + LY +M   +++PD +T  A+LSAC     ++      E    F  +Q   N+ P
Sbjct: 271 GEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVD------EGWKYFDSMQEDYNIVP 324

Query: 281 DEFTFVSVLSACAQLGAMD 299
               +  ++    + G +D
Sbjct: 325 TIEHYCCMVDLLGKSGFLD 343


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 337/607 (55%), Gaps = 54/607 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKLFTPCALGTFS---SLEYAREMFDQIPQPNLYTWNTLIRA 112
           ++H  +L  G   DP+ A+KL     +G +S   S++YAR++FD+  +  +Y WN L RA
Sbjct: 98  RVHRHILDNGSDQDPFLATKL-----IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA 152

Query: 113 YSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA----RLVQFRVGQAIHGMVIKS 168
            + +    +   ++ ++        + FT+ +V+KA             G+ IH  + + 
Sbjct: 153 LTLAGHGEEVLGLYWKM-NRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRR 211

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
            +   ++I  +L+  YA  G +  A  VF  +  ++VVSW++MI+ + + G   +A+  +
Sbjct: 212 GYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288
           REM  E                                        +K+ +P+  T VSV
Sbjct: 272 REMMTE----------------------------------------TKDSSPNSVTMVSV 291

Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
           L ACA L A++ G  IH  + ++G+     + ++L+ MY +CG LD    VF  +  RDV
Sbjct: 292 LQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDV 351

Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
             W+++I+ + ++G GR+A+ +F  M      P  VTF +VL ACSH GLV+EG+  F  
Sbjct: 352 VSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFES 411

Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
           M   +G+ P V+HY CMVD+LGRA  LDEA + ++ M   PG  VWG+LLG+C+IH NVE
Sbjct: 412 MWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVE 471

Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
           LAE A   L  LEP+N G  VLL++IYA+   WD V  ++K +   GL+K PG   +EV 
Sbjct: 472 LAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531

Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
            +++ F++ +  +PL ++I++ L ++   +K  GY+P    +L  +E E+ +   L  HS
Sbjct: 532 RKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLG-HS 590

Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
           E+LA+A+GLI+    +PIRI KNLR+C DCH   K ISK   +EIL+RD  RFH F+ G 
Sbjct: 591 EKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGV 650

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 651 CSCGDYW 657



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 9/258 (3%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           K+IH  + R G     Y  + L    A   F  ++YA  +F+ +P  N+ +W+ +I  Y+
Sbjct: 202 KEIHAHLTRRGYNSHVYIMTTLVDMYA--RFGCVDYASYVFNGMPVRNVVSWSAMIACYA 259

Query: 115 SSAEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
            + +  ++   F +++  +    PN  T   V++A A L     G+ IHG +++   +  
Sbjct: 260 KNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSI 319

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           L + ++L+  Y  CG L +   VF  +  +DVVSWNS+IS +   G+  KAI+++ EM  
Sbjct: 320 LPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLA 379

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
               P  VT V+VL AC+ +  +E G+       +F  +     + P    +  ++    
Sbjct: 380 NGASPTPVTFVSVLGACSHEGLVEEGK------RLFESMWRDHGIKPQVEHYACMVDLLG 433

Query: 294 QLGAMDIGVQIHAKMKKQ 311
           +   +D   ++   M+ +
Sbjct: 434 RANRLDEAAKMVQDMRTE 451



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
           LS+  +P + T+  ++  C    ++  G+++H  +   G   + +L T LI MY+  G++
Sbjct: 69  LSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSV 128

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           D A +VF   + R ++VW+ +     + G G E L L+ +M    V+ +  T+T VL AC
Sbjct: 129 DYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188

Query: 394 SHSGL----VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
             S      + +G+     +    G    V   T +VDM  R G +D A      MP+  
Sbjct: 189 VASECTADHLTKGKEIHAHLTR-RGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRN 247

Query: 450 GASVWGALLGAC 461
             S W A++ AC
Sbjct: 248 VVS-WSAMI-AC 257


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/695 (32%), Positives = 379/695 (54%), Gaps = 80/695 (11%)

Query: 32  NGHQHHPHPVFSLIKQCKN---IKQLKQIHTQMLRTGL---------FFDPYS------- 72
           +G + +   +  L++ C N     + +QIH  +LR GL             YS       
Sbjct: 83  SGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLEL 142

Query: 73  ASKLFTP----------CALGTFSSLEYARE---MFDQIP----QPNLYTWNTLIRAYSS 115
           + K+F              L +++ L Y  +   + D++     +P++ TWN+L+  Y+S
Sbjct: 143 SRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYAS 202

Query: 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF 175
                 +  + L+ +  +   P+  +   +++A A     ++G+AIHG ++++    D++
Sbjct: 203 KGLSKDAIAV-LKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVY 261

Query: 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMEN 235
           +  +LI  Y   G L  A  VF M+  K++V+WNS++SG       + A  L   ME E 
Sbjct: 262 VETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEG 321

Query: 236 VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295
           +KPD +T  ++ S  A       G+ P +AL +  +++  K V P+  ++ ++ S C++ 
Sbjct: 322 IKPDAITWNSLASGYAT-----LGK-PEKALDVIGKMK-EKGVAPNVVSWTAIFSGCSKN 374

Query: 296 GAMDIGVQIHAKMKKQGIKLNC-----------------------------------YLT 320
           G     +++  KM+++G+  N                                    Y+ 
Sbjct: 375 GNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVA 434

Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380
           T+L+DMY K G+L  A+E+F  +K++ +  W+ M+ G+AM+G G E +  FS M EA ++
Sbjct: 435 TALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGME 494

Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
           P+A+TFT+VL  C +SGLV EG  +F+ M   YG++P ++H +CMVD+LGR+G LDEA +
Sbjct: 495 PDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWD 554

Query: 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500
           FI+ M + P A++WGA L +CKIH ++ELAE A   L  LEP N    +++ N+Y+   +
Sbjct: 555 FIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNR 614

Query: 501 WDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560
           W++V  +R  MR + ++ +   S I+++  +H F A   +HP   +IY +L ++V+ +K 
Sbjct: 615 WEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKK 674

Query: 561 FGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
            GYVP+ S + Q + + + +E+ L  H+E+LA+ YGLI  +   PIR+VKN  +C D HT
Sbjct: 675 SGYVPDTSCIHQDISDSE-KEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHT 733

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VAK +S L NREI+L++  R HHFR G CSC D W
Sbjct: 734 VAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 206/408 (50%), Gaps = 19/408 (4%)

Query: 57  IHTQMLRTGLFFDPYSASKLFTPCALGTFS---SLEYAREMFDQIPQPNLYTWNTLIRAY 113
           IH  +++ GL     ++       ++G +    SL +A ++FD++P+ +   WN ++   
Sbjct: 9   IHGGLIKRGLD----NSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
             S    ++  +F ++ ++      + T   +++  +    F  G+ IHG V++   E +
Sbjct: 65  LRSGNWEKAVELFREMQFSGAK-AYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESN 123

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           + + NSLI  Y+  G L ++  VF  +  +++ SWNS++S + + G+ + AI L  EME+
Sbjct: 124 VSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEI 183

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
             +KPD VT  ++LS  A K          +A+++   +Q++  + P   +  S+L A A
Sbjct: 184 CGLKPDIVTWNSLLSGYASK------GLSKDAIAVLKRMQIA-GLKPSTSSISSLLQAVA 236

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
           + G + +G  IH  + +  +  + Y+ T+LIDMY K G L  A  VF  + ++++  W++
Sbjct: 237 EPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNS 296

Query: 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413
           +++G +     ++A  L  RM++  +KP+A+T+ ++    +  G  ++      +M+   
Sbjct: 297 LVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKE-K 355

Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVPGASVWGALL 458
           GV P V  +T +     + G    A++   KM    + P A+    LL
Sbjct: 356 GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 131/280 (46%), Gaps = 44/280 (15%)

Query: 157 VGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           +G  IHG +IK   ++ D  + ++ + FY  C  L  A  +F  + K+D ++WN ++   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           ++ G +EKA+EL+REM+    K  + TMV +L  C+ K     GR               
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGR--------------- 109

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
                                      QIH  + + G++ N  +  SLI MY++ G L+ 
Sbjct: 110 ---------------------------QIHGYVLRLGLESNVSMCNSLIVMYSRNGKLEL 142

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           + +VF+++K R++  W+++++ +   G   +A+ L   M+   +KP+ VT+ ++L   + 
Sbjct: 143 SRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYAS 202

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
            GL  +      +M+ + G+ P     + ++  +   G L
Sbjct: 203 KGLSKDAIAVLKRMQ-IAGLKPSTSSISSLLQAVAEPGHL 241


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 337/603 (55%), Gaps = 50/603 (8%)

Query: 56  QIHTQMLRTGLFFDPYSASKL--FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113
           Q+H  +++ GL   P  +  L  F       +SSL+    +F   P  +  TW+++I ++
Sbjct: 41  QLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQ----IFHDSPHKSATTWSSVISSF 96

Query: 114 SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD 173
           + +  P+ S   F +L+      P++  FP   K+   L    V + +H   +K+++  D
Sbjct: 97  AQNDLPLLSLNYF-RLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLD 155

Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
           +F+ +S+I  YA CGD+  A+ VF  +  ++VVSW+ +I G+VQ G  ++++ L++   +
Sbjct: 156 IFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLV 215

Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
           E                                         +N   ++FT  SVL  C 
Sbjct: 216 EE----------------------------------------ENEGVNDFTLSSVLRVCG 235

Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
               + +G  IH    K     +C++ +SLI +Y+KCG +++A +VF  V  R++ +W+ 
Sbjct: 236 GSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNA 295

Query: 354 MIAGFAMYGCGREALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           M+   A +    +  +LF +M+    +K N +TF  VL ACSH+GLV++G+ +F  M+  
Sbjct: 296 MLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKD- 354

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEY 472
           YG+ PG +HY+ MVD+LGRAG L++AV+ IE+MP+ P  SVWGALL  C++H N +LA Y
Sbjct: 355 YGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASY 414

Query: 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIH 532
               + EL   + G  V+LSN YA  G+W+  ++ RK MR  G+KKE G S +E    IH
Sbjct: 415 VADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIH 474

Query: 533 KFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA 592
            F AG+ SH    EIY KLDE+   +   GYV + S +L+ V+ E+ + +++  HSERLA
Sbjct: 475 TFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTSFVLKEVDGEE-KSRSIRYHSERLA 533

Query: 593 IAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCM 652
           IA+G I+    QPIR++KNLRVCGDCHT  K ISK   R I++RD  RFH F  G C+C 
Sbjct: 534 IAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCG 593

Query: 653 DYW 655
           DYW
Sbjct: 594 DYW 596



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 48/314 (15%)

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G  +H  +IK   +    +S+ LI+FY+       +  +F     K   +W+S+IS F Q
Sbjct: 39  GLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQ 98

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
                 ++  +R M  + V P                                       
Sbjct: 99  NDLPLLSLNYFRLMLRQGVPP--------------------------------------- 119

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
              D+  F S   +C  L ++ +   +H    K    L+ ++ +S+IDMY KCG++  A 
Sbjct: 120 ---DDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAH 176

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR--MQEAKVKPNAVTFTNVLCACSH 395
            VF  +  R+V  WS +I G+   G   E+L LF R  ++E     N  T ++VL  C  
Sbjct: 177 NVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGG 236

Query: 396 SGLVDEGRMFFN-QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
           S L+  GR+      +  +     V   + ++ +  + G+++EA +  E++  V    +W
Sbjct: 237 STLLQMGRLIHGLSFKTSFDSSCFVA--SSLISLYSKCGVVEEAYDVFEEV-TVRNLGMW 293

Query: 455 GALLGACKIHENVE 468
            A+L AC  H + +
Sbjct: 294 NAMLIACAQHAHTD 307



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 5/226 (2%)

Query: 270 HELQL--SKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
           H+LQL  S N  P      + L +     ++  G+Q+HA + K G++    L+  LI+ Y
Sbjct: 6   HQLQLPHSFNQQPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFY 65

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           +K      +L++FH    +    WS++I+ FA       +L+ F  M    V P+   F 
Sbjct: 66  SKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFP 125

Query: 388 NVLCACSHSGLVDEGRMFFN-QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
           +   +C     +   +M     ++  Y +   V   + ++DM  + G +  A    ++MP
Sbjct: 126 SATKSCGILSSLPVAKMLHCFALKTAYHLDIFVG--SSVIDMYAKCGDICYAHNVFDEMP 183

Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
                S  G + G  ++ E+ E        L+E E E      L S
Sbjct: 184 YRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSS 229


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/605 (35%), Positives = 326/605 (53%), Gaps = 47/605 (7%)

Query: 51  IKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           ++ LK++H    R    F     S  F   A     +L  A ++F  I    + +WN LI
Sbjct: 367 LRSLKELHGYSFRH--CFQHVELSNAFI-LAYAKCGALNSAEKVFHGIGDKTVSSWNALI 423

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             ++ + +P ++  +  Q+ Y+    P+ FT   ++ A A L   + G+ IHG V+++  
Sbjct: 424 GGHAQNGDPRKALHLLFQMTYSGQQ-PDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGL 482

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E D F+  SL+  Y  CG  + A  +F  +  K++VSWN+MISG+ Q G           
Sbjct: 483 ETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL---------- 532

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                          P E+L++F +  LS+ +   E   VSV  
Sbjct: 533 -------------------------------PYESLALFRK-SLSEGIQSHEIAIVSVFG 560

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           AC+QL A+ +G + H  + K     + ++  S+IDMY K G + ++ +VF  +K ++V  
Sbjct: 561 ACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVAS 620

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ +I    ++G G+EA++L+ RM++    P+  T+  +L AC H+GLV+EG  +F +M+
Sbjct: 621 WNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQ 680

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
               + P ++HY C++DML RAG LD+A+  + +MP      +W +LL +C+    +E+ 
Sbjct: 681 NFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIG 740

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     LLELEP+     VLLSN+YA  GKWD V  +R+ M+  GL+K+ GCS IEV G 
Sbjct: 741 EKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGR 800

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           ++ F+ G+S  P   EI      +  R+   GY PN S +L  V EE+ +   L  HSE+
Sbjct: 801 VYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEE-KIDILRGHSEK 859

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAI++GL+       +RI KNLR+C DCH  AKLISK   REI++RD  RFHHFR G CS
Sbjct: 860 LAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCS 919

Query: 651 CMDYW 655
           C DYW
Sbjct: 920 CCDYW 924



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 61/394 (15%)

Query: 10  ETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGL 66
           + L+T +I +  H                  +  L++ C N K +   +++H  +  +  
Sbjct: 19  DNLTTALILIQSHSQNAAFI----SLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTH 74

Query: 67  FFDPYSAS----KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
           + + Y  +    K++  C     S L+ +R +FD +   NL  WN L+  Y+ +      
Sbjct: 75  YRNDYVLNTRLIKMYAMCG----SPLD-SRLVFDNMETKNLIQWNALVSGYTRNGLYGDV 129

Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
             +F+ LV ++ + P+ FTFP VIKA   ++  R+G+ IHGMVIK     D+F+ N+L+ 
Sbjct: 130 VKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVG 189

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM-EMENVKPDEV 241
            Y  CG +  A  VF  + + ++VSWNSMI  F + GF   + +L  EM   E + PD V
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVV 249

Query: 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301
           T+V +L  CA +                                          G +DIG
Sbjct: 250 TVVTILPVCAGE------------------------------------------GEVDIG 267

Query: 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361
           + IH    K G+     +  +++ MY+KCG L++A   F    +++V  W+TMI+ F++ 
Sbjct: 268 MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 362 GCGREALDLFSRM--QEAKVKPNAVTFTNVLCAC 393
           G   EA +L   M  Q  ++K N VT  NVL AC
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 172/358 (48%), Gaps = 50/358 (13%)

Query: 43  SLIKQCKNIKQLKQ---IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP 99
           S+IK C  I  ++    IH  +++ GL  D +  + L      G   +++ A ++FD +P
Sbjct: 151 SVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVG--MYGKCGAVDEAMKVFDFMP 208

Query: 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQ 159
           + NL +WN++I A+S +     SF + ++++      P+  T   ++   A   +  +G 
Sbjct: 209 ETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGM 268

Query: 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
            IHG+ +K    +++ ++N++++ Y+ CG L  A   FV    K+VVSWN+MIS F   G
Sbjct: 269 GIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEG 328

Query: 220 FFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
              +A  L +EM++  E +K +EVT++ VL AC  K                  LQL   
Sbjct: 329 DVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDK------------------LQLRSL 370

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
                ++F      C Q                     +  L+ + I  Y KCG L+ A 
Sbjct: 371 KELHGYSF----RHCFQ---------------------HVELSNAFILAYAKCGALNSAE 405

Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           +VFH +  + V  W+ +I G A  G  R+AL L  +M  +  +P+  T +++L AC+H
Sbjct: 406 KVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 44/297 (14%)

Query: 144 FVIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
            +++A         G+ +H  V  S+ + +D  ++  LI  YA+CG    +  VF  +  
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107

Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
           K+++ WN+++SG+ + G +                                         
Sbjct: 108 KNLIQWNALVSGYTRNGLY----------------------------------------- 126

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
            + + +F +L    +  PD FTF SV+ AC  +  + +G  IH  + K G+ L+ ++  +
Sbjct: 127 GDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNA 186

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKP 381
           L+ MY KCG +D+A++VF  +   ++  W++MI  F+  G  R++ DL   M  E  + P
Sbjct: 187 LVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLP 246

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           + VT   +L  C+  G VD G M  + +    G+   V     MV M  + G L+EA
Sbjct: 247 DVVTVVTILPVCAGEGEVDIG-MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 338/574 (58%), Gaps = 15/574 (2%)

Query: 85  FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           F   + A  +FDQ+  P++ +WN++I  Y      I++   F  ++ +S   P++FT   
Sbjct: 224 FCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGS 283

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK- 203
           V+ A A     ++G+ IH  ++++  +    + N+LI  YA  G + +A+ +  + G   
Sbjct: 284 VLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPS 343

Query: 204 -DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
            +V+++ S++ G+ + G  + A  ++  ++  +V    V   A++   A+   +      
Sbjct: 344 LNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDV----VAWTAMIVGYAQNGLI------ 393

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           ++AL +F  L + +   P+ +T  +VLS  + L ++D G Q+HA   +     +  +  +
Sbjct: 394 SDALVLF-RLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNA 452

Query: 323 LIDMYTKCGNLDKALEVF-HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381
           LI MY++ G++  A ++F H    RD   W++MI   A +G G EA++LF +M    +KP
Sbjct: 453 LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKP 512

Query: 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441
           + +T+  VL AC+H GLV++G+ +FN M+ V+ + P   HY CM+D+LGRAGLL+EA  F
Sbjct: 513 DHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNF 572

Query: 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501
           I  MPI P    WG+LL +C++H+ V+LA+ A   LL ++P N GA + L+N  +  GKW
Sbjct: 573 IRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKW 632

Query: 502 DNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSF 561
           ++ +++RK M+   +KKE G S +++  ++H F   ++ HP    IY  + +I   +K  
Sbjct: 633 EDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKM 692

Query: 562 GYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTV 621
           G++P+ + +L  +E+E V+EQ L  HSE+LAIA+ LI+      +RI+KNLRVC DCH+ 
Sbjct: 693 GFIPDTNSVLHDLEQE-VKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSA 751

Query: 622 AKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            + IS L  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 752 IRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 161/345 (46%), Gaps = 49/345 (14%)

Query: 157 VGQAIHGMVIKSSFED-DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
           +G+ IH  +IK       +F++N+L++ Y   G  + A+ +F  +  K   SWN+++S  
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
            + G  + A  ++ E+     +PD V+   ++           G + + A+  F  + +S
Sbjct: 90  AKAGNLDSARRVFDEIP----QPDSVSWTTMIVGYN-----HLGLFKS-AVHAFLRM-VS 138

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
             ++P +FTF +VL++CA   A+D+G ++H+ + K G      +  SL++MY KCG+   
Sbjct: 139 SGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVM 198

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A  VF  ++ +D   W+TMI+    +     AL LF +M +    P+ V++ +++    H
Sbjct: 199 AKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIITGYCH 254

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
            G        F+ M                                ++   + P     G
Sbjct: 255 QGYDIRALETFSFM--------------------------------LKSSSLKPDKFTLG 282

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGAL-VLLSNIYAKTG 499
           ++L AC   E+++L +   +H++  + +  GA+   L ++YAK+G
Sbjct: 283 SVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 15/271 (5%)

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
           F  N+++  +A  G+L  A  VF  I + D VSW +MI G+   G F+ A+  +  M   
Sbjct: 80  FSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS 139

Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
            + P + T   VL++CA  + L+ G+   +  S   +L  S  V P   + +++ + C  
Sbjct: 140 GISPTQFTFTNVLASCAAAQALDVGK---KVHSFVVKLGQS-GVVPVANSLLNMYAKC-- 193

Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353
                 G  + AK+    ++L    T  ++I M+ +    D AL +F  +   D+  W++
Sbjct: 194 ------GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNS 247

Query: 354 MIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412
           +I G+   G    AL+ FS M + + +KP+  T  +VL AC++   +  G+     +   
Sbjct: 248 IITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRA 307

Query: 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443
              + G      ++ M  ++G ++ A   +E
Sbjct: 308 DVDIAGAVG-NALISMYAKSGAVEVAHRIVE 337


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 345/633 (54%), Gaps = 61/633 (9%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A G   S++ A   F +I + N Y++  ++ AY  +    ++  +F + + N     N+ 
Sbjct: 26  AYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSI-NEELQQNQA 84

Query: 141 TFPFVIKAAARLVQ--FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198
           T+  V+K+ A L +     G+ IH   I   F  DL + NSLIH YA CG    A  VF 
Sbjct: 85  TYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFE 144

Query: 199 MIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE- 257
            +  K+++S+ SMI  +       +A ELY++M  E + PD     A L+ C   R+ E 
Sbjct: 145 KMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIREGEA 204

Query: 258 -------------------------FGR-----W-------------------------P 262
                                    FGR     W                          
Sbjct: 205 IHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDG 264

Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
           ++A+S++ E++  +N+ P+ +TF SVL AC++LGA+  G +IH K+K      +    T+
Sbjct: 265 SKAISLYIEME-GRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTA 323

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L++MY KCG+  +A  VF+    ++VF W+++++ ++  G  +  L+ + RM    V P+
Sbjct: 324 LVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPD 383

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
            VTFT +  ACSHSGL DEG ++F  M   + +VP   HYTCM+D+LGR G L EA E +
Sbjct: 384 DVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELV 443

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
             MP  P    W  LL ACK++ ++++   A   + EL P + G  +L+ N+YAK GKW 
Sbjct: 444 RTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWA 503

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
           +V+E++K ++  GL K PG S IE    IH+F+ G+++HPL +EI ++L E+  +L   G
Sbjct: 504 DVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAG 563

Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
           Y P+   +L  V EE V+ + L  HSER+A+  GL++ +    + IVKNLR+C DCH+  
Sbjct: 564 YEPDTKEVLVDVNEE-VKPELLLFHSERMALGLGLLTSDAGATLHIVKNLRICPDCHSFF 622

Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           KL+SK+ +R++L+RD +RFH F+ G+CSC DYW
Sbjct: 623 KLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 42/234 (17%)

Query: 162 HGMVIKSSFEDD--LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219
           H  +I ++ E +   F+ N L+  Y  C  +  A   F  I +K+  S+  M+  + +  
Sbjct: 3   HERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQEND 62

Query: 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVN 279
             +KA++L+++   E ++ ++ T V VL +CA                      L ++  
Sbjct: 63  LHKKALQLFKKSINEELQQNQATYVTVLKSCA---------------------HLGEDYL 101

Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339
            D                   G +IH     QG   +  +  SLI MY KCG+   A  V
Sbjct: 102 ED-------------------GKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGV 142

Query: 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
           F  ++ +++  +++MI  +       EA +L+ +M    + P+   +   L  C
Sbjct: 143 FEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVC 196



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
           +L   L+  Y +C ++D A+  F  +  ++ + ++ M+  +      ++AL LF +    
Sbjct: 18  FLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINE 77

Query: 378 KVKPNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +++ N  T+  VL +C+H G   L D   +  + +   +G    V++   ++ M  + G 
Sbjct: 78  ELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQN--SLIHMYAKCGS 135

Query: 435 LDEAVEFIEKM 445
              A    EKM
Sbjct: 136 FKFAAGVFEKM 146


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/570 (39%), Positives = 340/570 (59%), Gaps = 25/570 (4%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAY--SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145
           L+ A+E+F +IP+P+  ++NT++  Y  +S+ E  Q+F   +  + ++P      ++  +
Sbjct: 23  LKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMP-IKDTP------SWNTM 75

Query: 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV 205
           I   A+  Q    + +  +++ +    ++   N++I  Y  CGDL  A  +F     K V
Sbjct: 76  ITGFAQNQQMDKARDLF-LIMPTK---NVVTWNAMISGYVECGDLDSALKLFEKAPFKSV 131

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           V+W +MI+G+++ G    A  L+ +M  +N+    VT  A+++   +    E G      
Sbjct: 132 VAWTAMITGYMKLGRIGLAERLFEKMPEKNL----VTWNAMIAGYIENHRAEDG------ 181

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + +   + P+  T  S L  C++L A+ +G Q+H  + K  +  +    TSLI 
Sbjct: 182 VKLFRTM-VGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLIS 240

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY KCG L+   ++F  V  RDV  W+ MI+G+A +G G++AL LF  M E  +KP+ +T
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWIT 300

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
           F  VL AC+H+G  D G  +F+ M   YG+V    HYTCMVD+LGRAG L EAV+ IEKM
Sbjct: 301 FVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360

Query: 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505
           P  P A+V+G LLGAC+IH+N E+AE+A   LL L+P +    V L+N+YA T +WD+V+
Sbjct: 361 PFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVA 420

Query: 506 ELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVP 565
            +RK M+   + K PG S IEV    H+F +G+  HP    I+ KL E+  ++K  GYVP
Sbjct: 421 RVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVP 480

Query: 566 NRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLI 625
           +    L  V EE  +EQ L  HSE+LAIAYGLI + P  PIR+ KNLRVCGDCH   K I
Sbjct: 481 DLEFALHDVGEEQ-KEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYI 539

Query: 626 SKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           S++  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 540 SQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 127/277 (45%), Gaps = 21/277 (7%)

Query: 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
           G L  A  +FV I + D VS+N+M+S +V+    E+A   + +M +++  P   TM+   
Sbjct: 21  GKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDT-PSWNTMI--- 76

Query: 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
           +  A+ + ++  R       +F  +  +KNV     T+ +++S   + G +D  +++  K
Sbjct: 77  TGFAQNQQMDKAR------DLFL-IMPTKNV----VTWNAMISGYVECGDLDSALKLFEK 125

Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
              + +       T++I  Y K G +  A  +F  +  +++  W+ MIAG+       + 
Sbjct: 126 APFKSV----VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG 181

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           + LF  M    ++PN+ T ++ L  CS    +  GR   +Q+     +       T ++ 
Sbjct: 182 VKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQ-VHQLVCKSPLCDDTTAGTSLIS 240

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH 464
           M  + G+L++  +   ++P       W A++     H
Sbjct: 241 MYCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQH 276


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/607 (34%), Positives = 343/607 (56%), Gaps = 21/607 (3%)

Query: 55  KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
           ++IH +++  G   D   A+ L      G   S   ARE+FD++ + ++ +WN +I  Y 
Sbjct: 227 RKIHAEIVANGFDTDLVVATALIN--MYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
            + +  ++  ++ +L     +   + TF  ++ A + +     G+ +H  +++   + ++
Sbjct: 285 LNGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEV 343

Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFE---KAIELYREM 231
            ++ +L++ YA CG L  A  VF  +  +D V+W+++I  +   G+ +   KA +++  +
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 232 -EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
              + +  + +    V + CA             A+ IF E+  +  + PD  TF++VL 
Sbjct: 404 GSRDTISWNAMITTYVQNGCAVA-----------AMKIFREMTGAAGLKPDAVTFIAVLE 452

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           ACA LG +     +HA++ +  ++ N  +T +LI+MY +CG+L++A  +F   K + V  
Sbjct: 453 ACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS 512

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+A F+ YG   EALDLF  M    VKP+ VT+T++L  C+H G +++G  +F  M 
Sbjct: 513 WTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMA 572

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
            ++ + P   H+  MVD+LGR+G L +A E +E MP  P    W   L AC+IH  +EL 
Sbjct: 573 ELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELG 632

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E A   + EL+P +    + +SNIYA  G W+ V+ +RK M   GLKK PG S IEV+G+
Sbjct: 633 EAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGK 692

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           +H+F +G   HP   EI  +L  +   +++ GYVP+   +L  V E + +E  L  HSE+
Sbjct: 693 LHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGE-KETMLLYHSEK 751

Query: 591 LAIAYGLISVEPS-QPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRG-GN 648
           +AIA+GL+S   S +PIR+VKNLRVC DCHT  K I+++  R+I++RD  RFH F   G 
Sbjct: 752 MAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGK 811

Query: 649 CSCMDYW 655
           CSC DYW
Sbjct: 812 CSCGDYW 818



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 202/405 (49%), Gaps = 21/405 (5%)

Query: 39  HPVF-SLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQ 97
           H  F S++  C ++ Q ++IH ++  +GL      A+ L T  A   F S+  A+ MF  
Sbjct: 110 HVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMFQS 167

Query: 98  IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
           +   +  +WN +I A+S S +   +  IF ++  +    PN  T+  VI   +       
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVK--PNSTTYINVISGFSTPEVLPE 225

Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
           G+ IH  ++ + F+ DL ++ +LI+ Y  CG    A  VF  + K+D+VSWN MI  +V 
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285

Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
            G F +A+ELY++++ME  K  + T V++L AC+  + L  GR       + H   L + 
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-------LVHSHILERG 338

Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG---NLD 334
           ++ +     ++++  A+ G+++   ++   MK +    +    ++LI  Y   G   +  
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR----DAVAWSTLIGAYASNGYGKDAR 394

Query: 335 KALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCAC 393
           KA +VF  + SRD   W+ MI  +   GC   A+ +F  M   A +KP+AVTF  VL AC
Sbjct: 395 KARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           +  G + E +    Q+     +   V     +++M  R G L+EA
Sbjct: 455 ASLGRLSEVKALHAQISESE-LESNVVVTNTLINMYARCGSLEEA 498



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 188/416 (45%), Gaps = 53/416 (12%)

Query: 47  QCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLY 104
            C ++ + + +H ++  +    D    + L +    G   SL  AR +F+ +   Q N+ 
Sbjct: 19  SCGDVVEGRALHERIRCSRFERDTMVGNALIS--MYGKCDSLVDARSVFESMDWRQRNVV 76

Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
           +WN +I AY+ +    ++ +++ ++        +  TF  V+ A + L Q   G+ IH  
Sbjct: 77  SWNAMIAAYAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSSLAQ---GREIHNR 132

Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           V  S  +    ++N+L+  YA  G +  A  +F  +  +D  SWN++I    Q G +  A
Sbjct: 133 VFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284
           + +++EM+  +VKP+  T + V+S  +    L  GR                        
Sbjct: 193 LRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGR------------------------ 227

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
                             +IHA++   G   +  + T+LI+MY KCG+  +A EVF  +K
Sbjct: 228 ------------------KIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMK 269

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404
            RD+  W+ MI  + + G   EAL+L+ ++     K    TF ++L ACS    + +GR+
Sbjct: 270 KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRL 329

Query: 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
             + +    G+   V   T +V+M  + G L+EA +    M     A  W  L+GA
Sbjct: 330 VHSHILE-RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 150/340 (44%), Gaps = 56/340 (16%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
           P+  TF  V+ + +       G+A+H  +  S FE D  + N+LI  Y  C  L  A  V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 197 FVMIG--KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254
           F  +   +++VVSWN+MI+ + Q G   +A+ LY  M ++ +                  
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL------------------ 106

Query: 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314
                                     D  TFVSVL AC+ L     G +IH ++   G+ 
Sbjct: 107 ------------------------GTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLD 139

Query: 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM 374
               L  +L+ MY + G++  A  +F ++++RD   W+ +I   +  G    AL +F  M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +   VKPN+ T+ NV+   S   ++ EGR    ++    G    +   T +++M G+ G 
Sbjct: 200 K-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEI-VANGFDTDLVVATALINMYGKCGS 257

Query: 435 LDEAVEFIEKMPIVPGASVWGALLGACKI-----HENVEL 469
             EA E  +KM      S W  ++G C +     HE +EL
Sbjct: 258 SHEAREVFDKMKKRDMVS-WNVMIG-CYVLNGDFHEALEL 295


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 337/594 (56%), Gaps = 53/594 (8%)

Query: 69  DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRA-----YSSSAEPIQSF 123
           DP+ +++L    A    S+L  AR++FD+ P  N++ WN +++A     +   A    + 
Sbjct: 283 DPFLSTRLIE--AYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLAD 340

Query: 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183
           M  L +  +S  + +         A+      RV + +H   I+  +     ++ +LI  
Sbjct: 341 MGRLGVPVDSYSYAHGLKACIAASASHLPASARVRE-MHAHAIRRGYGLHTHVATTLIDC 399

Query: 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243
           YA  G ++ A  VF  +  +++VSW++MI  + +                          
Sbjct: 400 YAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKN------------------------- 434

Query: 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSK-NVNPDEFTFVSVLSACAQLGAMDIGV 302
                             P +A+ IF E+  S  ++ P+  T VSVL ACA + A+  G 
Sbjct: 435 ----------------ERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGK 478

Query: 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV-KSRDVFVWSTMIAGFAMY 361
            +HA + ++G  L   +  +L+ MY KCG L+    +F+ + + R+V  W+++I+G+ M+
Sbjct: 479 VLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMH 538

Query: 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421
           G GRE+L +F  M E  + PN +TF +VL ACSH GLV++G+  F  M   Y V P  +H
Sbjct: 539 GFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVE-YNVTPRAEH 597

Query: 422 YTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481
           Y CMVD+LGRAG LDEAVE I+ M I P   VWG+LLGAC+IH +VE AE ACSHL +LE
Sbjct: 598 YACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLE 657

Query: 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSH 541
           P N G  VLL++IYA+    + V  L++ +    L+K PGCS IEV  +++ F++ ++ +
Sbjct: 658 PRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKN 717

Query: 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVE 601
           P  +E+ + + E V ++K+ GYVP+   +L  +EEE+ +E+ L  HSE+LA+A+GLI   
Sbjct: 718 PQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEE-KERILLGHSEKLAVAFGLIKTG 776

Query: 602 PSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             + IRI KNLR+C DCH+V K ISK  +REI++RD  RFHHFR G CSC DYW
Sbjct: 777 SGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 13/262 (4%)

Query: 53  QLKQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111
           +++++H   +R G     + A+ L    A LG  S   YA  +F  +P  NL +W+ +I 
Sbjct: 373 RVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVS---YAERVFTSMPDRNLVSWSAMIG 429

Query: 112 AYSSSAEPIQSFMIFLQLVY-NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
            Y+ +  P  +  IF +++  ++   PN  T   V+ A A +     G+ +H  +++  F
Sbjct: 430 CYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGF 489

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEKAIELYR 229
           +  + + N+L+  Y  CG L     +F  IG++ +VVSWNS+ISG+   GF  ++++++ 
Sbjct: 490 DLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFE 549

Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289
           EM  E + P+ +T V+VL AC+    +E G+       +F E  +  NV P    +  ++
Sbjct: 550 EMIEEGISPNIITFVSVLGACSHVGLVEQGK------KLF-ESMVEYNVTPRAEHYACMV 602

Query: 290 SACAQLGAMDIGVQIHAKMKKQ 311
               + G +D  V++   M+ Q
Sbjct: 603 DLLGRAGRLDEAVELIQSMRIQ 624



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 163/422 (38%), Gaps = 89/422 (21%)

Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMV-IKSSFEDDLFISNSLIHFYAICGDLAMAYC 195
           P + T+  ++ AAAR     +  A+H  +     F  D F+S  LI  YA    L  A  
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 196 VFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255
           VF     K++  WN+M+         E+A+    +M    V  D  +    L AC     
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKAC----- 360

Query: 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                                           + ++ + L A     ++HA   ++G  L
Sbjct: 361 --------------------------------IAASASHLPASARVREMHAHAIRRGYGL 388

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM- 374
           + ++ T+LID Y K G +  A  VF ++  R++  WS MI  +A      +A+ +F  M 
Sbjct: 389 HTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMM 448

Query: 375 -QEAKVKPNAVTFTNVLCACS-----------------------------------HSGL 398
             +A + PN++T  +VL AC+                                     G 
Sbjct: 449 ASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGC 508

Query: 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWG 455
           ++ GR  FN +    G    V  +  ++   G  G   E+++  E+M    I P    + 
Sbjct: 509 LETGRYIFNWI----GRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFV 564

Query: 456 ALLGACK----IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511
           ++LGAC     + +  +L E    + +    E++  +V   ++  + G+ D   EL + M
Sbjct: 565 SVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMV---DLLGRAGRLDEAVELIQSM 621

Query: 512 RV 513
           R+
Sbjct: 622 RI 623


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 333/571 (58%), Gaps = 15/571 (2%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +E A  MF+ + + ++ +WNT+I  Y+ +     +   F +++  S   P+ FT   V+ 
Sbjct: 429 MELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF--VMIGKKDV 205
           A A L   ++G+ +H  ++++       I N+LI  YA  G +  A  +    ++   +V
Sbjct: 489 ACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNV 548

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +S+ +++ G+V+ G  ++A E++  M   +V    +   A++    +          +EA
Sbjct: 549 ISFTALLEGYVKLGDTKQAREIFDIMNNRDV----IAWTAMIVGYHQNGQ------NDEA 598

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           + +F  + L     P+  T  +VLSACA L  +D G QIH K  +   + +  ++ ++I 
Sbjct: 599 MELFRSMILI-GPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIIT 657

Query: 326 MYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
           +Y + G++  A  VF  +  R +   W++MI   A +G G +A+ LF  M    VKP+ +
Sbjct: 658 VYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHI 717

Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
           T+  VL AC+H+G VD+G+ ++ QM+  +G+VP + HY CMVD+  RAGLL EA EFI++
Sbjct: 718 TYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQR 777

Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
           MP+ P   VWG+LL AC++ +N +LAE A   LL ++P N GA   L+N+Y+  G+W++ 
Sbjct: 778 MPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDA 837

Query: 505 SELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564
           + + K  +  G+KKE G S   V G++H F A +  HP    IY K  E+   +K  G+V
Sbjct: 838 ARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFV 897

Query: 565 PNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKL 624
           P+ + +L  V++E ++E+ L+ HSE+LAIA+GLIS      +RI+KNLRVC DCHT  K 
Sbjct: 898 PDLNSVLHDVDDE-LKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKF 956

Query: 625 ISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ISK  +REI++RD  RFHHFR G CSC DYW
Sbjct: 957 ISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 212/526 (40%), Gaps = 111/526 (21%)

Query: 37  HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS--LEYAREM 94
           H   +  L +   N    + IH   ++ GL    Y  + L    A    S      AR +
Sbjct: 211 HYARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCL 270

Query: 95  FDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQL----------------------- 129
           FD IP  + N +TWN+L+  Y+ S     + ++F ++                       
Sbjct: 271 FDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWD 330

Query: 130 -------VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
                  + +  + P++FT   V+ + A +    VG+ +H  V+K      + ++NS+++
Sbjct: 331 AVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY 390

Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
            Y  CGD   A  VF  +  + V SWN M+S +   G  E A+ ++     EN+    + 
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMF-----ENMVERSIV 445

Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302
               + A   +  L+       AL  F  +  + ++ PD FT  SVLSACA L  + +G 
Sbjct: 446 SWNTIIAGYNQNGLD-----GMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGK 500

Query: 303 QIHAKMKKQGI---------------------------------KLNCYLTTSLIDMYTK 329
           Q+H+ + + G+                                  LN    T+L++ Y K
Sbjct: 501 QMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVK 560

Query: 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
            G+  +A E+F  + +RDV  W+ MI G+   G   EA++LF  M     +PN+ T   V
Sbjct: 561 LGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAV 620

Query: 390 LCACSHSGLVDEGRMFF---------------NQMEPVY---GVVPGVKH---------- 421
           L AC+    +D G+                  N +  VY   G VP  +           
Sbjct: 621 LSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKE 680

Query: 422 ---YTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGAC 461
              +T M+  + + GL ++AV   E+M    + P    +  +L AC
Sbjct: 681 TITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSAC 726


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 316/568 (55%), Gaps = 44/568 (7%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           LE AR++FD++P  N+ TWN ++   ++S    +S   F  +       P+E+    + +
Sbjct: 16  LETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAM-RREGMQPDEYGLGSLFR 74

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
             A L     G+ +H  V++S  + D+ + +SL H Y  CG L         +   ++VS
Sbjct: 75  CCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVS 134

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALS 267
            N+ ISG  Q G  E A+E +  M    V+ + VT                         
Sbjct: 135 CNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVT------------------------- 169

Query: 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327
                            FVS +++C+ L A+  G QIHA   K G+     + TSL+ MY
Sbjct: 170 -----------------FVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMY 212

Query: 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT 387
           ++CG L  +  V       D+ + S MI+ +  +G G++A+ LF +M  A  +PN VTF 
Sbjct: 213 SRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFL 272

Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI 447
            +L ACSHSGL DEG   F  M   YG+ P VKHYTC+VD+LGR+G L+EA + I  MP+
Sbjct: 273 TLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPV 332

Query: 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507
            P   +W  LL ACK  +  ++AE     ++EL+P +  + VLLSNI A + +W++VS++
Sbjct: 333 QPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKV 392

Query: 508 RKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNR 567
           R+ MR   ++KEPG S +E+ G+IH+F  G+ SH   +EI   L+E++ R++  GY P+ 
Sbjct: 393 RETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDM 452

Query: 568 SHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISK 627
           S +   +E+E+ +E +L  HSE+LAIA+  +S+    PIR++KNLRVC DCH   KL+SK
Sbjct: 453 SMVFHDMEDEE-KEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSK 511

Query: 628 LYNREILLRDRYRFHHFRGGNCSCMDYW 655
           +  REI++RD  RFHHF+ G CSC DYW
Sbjct: 512 VIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 12/233 (5%)

Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265
           +SWN +I G+V+ G  E A +L+ EM   NV      MVA L+               E+
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWN-AMVAGLTNSGLN---------EES 50

Query: 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325
           L  F  ++  + + PDE+   S+   CA L  +  G Q+HA + + G+  +  + +SL  
Sbjct: 51  LGFFFAMR-REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAH 109

Query: 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385
           MY +CG L         + S ++   +T I+G    G    AL+ F  M+ A V+ NAVT
Sbjct: 110 MYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVT 169

Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
           F + + +CS    + +G+   + +    GV   V   T +V M  R G L ++
Sbjct: 170 FVSAVTSCSDLAALAQGQQ-IHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS 221



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           LI  Y K G+L+ A ++F  + +R+V  W+ M+AG    G   E+L  F  M+   ++P+
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC----MVDMLGRAGLLDEA 438
                ++   C+    V  GR         Y V  G+    C    +  M  R G L + 
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVH-----AYVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 120

Query: 439 VEFIEKMP 446
              +  +P
Sbjct: 121 EAALRALP 128


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 326/575 (56%), Gaps = 49/575 (8%)

Query: 88  LEYAREMFDQIPQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
           L  AR +F ++ +    +  +WN +I A     E +++  +F ++V       + FT   
Sbjct: 190 LSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKV-DMFTMAS 248

Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC-GDLAMAYCVFVMIGKK 203
           V+ A   +     G+  HGM+IKS F  +  + + LI  Y+ C G +     VF  I   
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAP 308

Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263
           D+V WN+MISGF           LY ++                         E G W  
Sbjct: 309 DLVLWNTMISGF----------SLYEDLS------------------------EDGLW-- 332

Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTS 322
                F E+Q      PD+ +FV V SAC+ L +  +G Q+HA   K  +  N   +  +
Sbjct: 333 ----CFREMQ-RNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNA 387

Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
           L+ MY+KCGN+  A  VF T+   +    ++MIAG+A +G   E+L LF  M E  + PN
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPN 447

Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
           ++TF  VL AC H+G V+EG+ +FN M+  + + P  +HY+CM+D+LGRAG L EA   I
Sbjct: 448 SITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERII 507

Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
           E MP  PG+  W  LLGAC+ H NVELA  A +  L LEP N    V+LSN+YA   +W+
Sbjct: 508 ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWE 567

Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
             + +++ MR  G+KK+PGCS IE++ ++H F+A ++SHP+ KEI+  + +++ ++K  G
Sbjct: 568 EAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAG 627

Query: 563 YVPN-RSHLLQLVE-EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHT 620
           YVP+ R  L++  E E D +E+ L  HSE+LA+A+GLIS E   PI +VKNLR+CGDCH 
Sbjct: 628 YVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHN 687

Query: 621 VAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
             KLIS L  REI +RD +RFH F+ G+CSC DYW
Sbjct: 688 AVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 50/320 (15%)

Query: 81  ALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF 140
           A    S +  AR +FD+IPQP++ ++NTLI AY+   E   +  +F + V       + F
Sbjct: 84  AYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEE-VRELRLGLDGF 142

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           T   VI A    V     + +H  V+    +    ++N+++  Y+  G L+ A  VF  +
Sbjct: 143 TLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREM 200

Query: 201 GK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
           G+   +D VSWN+MI    Q     +A+ L+REM    +K D  TM +VL+A    +DL 
Sbjct: 201 GEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLV 260

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
            GR                                          Q H  M K G   N 
Sbjct: 261 GGR------------------------------------------QFHGMMIKSGFHGNS 278

Query: 318 YLTTSLIDMYTKC-GNLDKALEVFHTVKSRDVFVWSTMIAGFAMY-GCGREALDLFSRMQ 375
           ++ + LID+Y+KC G++ +  +VF  + + D+ +W+TMI+GF++Y     + L  F  MQ
Sbjct: 279 HVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQ 338

Query: 376 EAKVKPNAVTFTNVLCACSH 395
               +P+  +F  V  ACS+
Sbjct: 339 RNGFRPDDCSFVCVTSACSN 358



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 160/333 (48%), Gaps = 41/333 (12%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSAS---KLFTPCALGTFSSLEYAREMFDQIPQPNLYT 105
           K++   +Q H  M+++G   + +  S    L++ CA     S+   R++F++I  P+L  
Sbjct: 257 KDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCA----GSMVECRKVFEEITAPDLVL 312

Query: 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV 165
           WNT+I  +S   +  +  +   + +  + + P++ +F  V  A + L    +G+ +H + 
Sbjct: 313 WNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALA 372

Query: 166 IKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
           IKS    + + ++N+L+  Y+ CG++  A  VF  + + + VS NSMI+G+ Q G   ++
Sbjct: 373 IKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVES 432

Query: 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG-RWPN-------------------E 264
           + L+  M  +++ P+ +T +AVLSAC     +E G ++ N                   +
Sbjct: 433 LRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMID 492

Query: 265 ALSIFHELQLSKNV------NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
            L    +L+ ++ +      NP    + ++L AC + G +++ V    K   + ++L  Y
Sbjct: 493 LLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAV----KAANEFLRLEPY 548

Query: 319 LTTS---LIDMYTKCGNLDKALEVFHTVKSRDV 348
                  L +MY      ++A  V   ++ R V
Sbjct: 549 NAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 146/334 (43%), Gaps = 25/334 (7%)

Query: 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
           TF  ++KA         G+ +H +  KS      ++SN     Y+ CG L  A   F + 
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
              +V S+N++I+ + +      A  ++ E+     +PD V+   +++A A + +     
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGEC---- 122

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV--QIHAKMKKQGIKLNCY 318
                L +F E++    +  D FT   V++AC      D+G+  Q+H  +   G      
Sbjct: 123 --GPTLRLFEEVR-ELRLGLDGFTLSGVITACGD----DVGLVRQLHCFVVVCGHDCYAS 175

Query: 319 LTTSLIDMYTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
           +  +++  Y++ G L +A  VF  +     RD   W+ MI     +  G EA+ LF  M 
Sbjct: 176 VNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMV 235

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-TCMVDMLGR-AG 433
              +K +  T  +VL A +    +  GR F   M  +     G  H  + ++D+  + AG
Sbjct: 236 RRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMM--IKSGFHGNSHVGSGLIDLYSKCAG 293

Query: 434 LLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
            + E  +  E++   P   +W  ++    ++E++
Sbjct: 294 SMVECRKVFEEI-TAPDLVLWNTMISGFSLYEDL 326


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/605 (35%), Positives = 342/605 (56%), Gaps = 55/605 (9%)

Query: 55  KQIHTQML----RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +Q+H +M+    R  +F      + ++  C      +L+ AR + D++P+ ++ +W T+I
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVT-MYVRCG-----ALDDARNVLDRMPERSVVSWTTMI 115

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             YS +   +++  +F++++  +   PNE+T   V+ + +       G+ +H +++K++F
Sbjct: 116 SGYSQTERHVEALDLFIKML-RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF 174

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E  +F+ +SL+  YA   ++  A  VF  + ++DVVS  ++ISG+ Q G  E        
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE-------- 226

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                            EAL +F +L  S+ +  +  TF ++++
Sbjct: 227 ---------------------------------EALDLFRQL-YSEGMQCNHVTFTTLVT 252

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + L ++D G Q+HA + ++ +     L  SLIDMY+KCG L  +  VF  +  R V  
Sbjct: 253 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 312

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+ G+  +G G E + LF  + + +VKP++VT   VL  CSH GLVDEG   F+ + 
Sbjct: 313 WNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 371

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
                +    HY C++D+LGR+G L++A+  IE MP     S+WG+LLGAC++H NV + 
Sbjct: 372 KEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVG 431

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     LLE+EPEN G  V+LSNIYA  G W +V ++RK M    + KEPG S I ++  
Sbjct: 432 ELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 491

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH F + E  HP  K+I +K+ EI   +K+ G+VP+ S +L  V++E  +E+ L  HSE+
Sbjct: 492 IHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQ-KERMLLGHSEK 550

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAI +GL++  P   IR++KNLR+C DCH  AK +SK+Y REI LRD+ RFH    GNC+
Sbjct: 551 LAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCT 610

Query: 651 CMDYW 655
           C DYW
Sbjct: 611 CGDYW 615



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 10/221 (4%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           ++I Q KQ+H+ +++T      +  S L    A     +++ AR +FD +P+ ++ +   
Sbjct: 157 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA--KSENIQEARRVFDTLPERDVVSCTA 214

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +I  Y+      ++  +F QL Y+     N  TF  ++ A + L     G+ +H ++++ 
Sbjct: 215 IISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK 273

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
                + + NSLI  Y+ CG L  +  VF  + ++ VVSWN+M+ G+ + G   + I L+
Sbjct: 274 ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 333

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +++  E VKPD VT++AVLS C+       G   +E L IF
Sbjct: 334 KDLHKE-VKPDSVTLLAVLSGCSH------GGLVDEGLDIF 367



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + + ++AC +  A+  G Q+HA+M     +   +L T L+ MY +CG LD A  V   + 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            R V  W+TMI+G++      EALDLF +M  A   PN  T   VL +CS    + +G+
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGK 163


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 336/576 (58%), Gaps = 80/576 (13%)

Query: 45  IKQCKNIKQLKQIHTQMLRTGLFFDPYSASKL--FTPCALGTFSSLEYAREMFDQIPQPN 102
           I +CK I+ LKQIH  ++ +GL  D +  SK+  F    +G    ++YA   FD + Q +
Sbjct: 12  IHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGF---VDYA---FDFLNQTD 65

Query: 103 LYT----WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           L+     +NTLI AY+SS  P  +F+++ ++V N  + P+ +TFP V+KA  + +  + G
Sbjct: 66  LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNG-FVPDMYTFPVVLKACTKFLGVQEG 124

Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
           + +HG+ +K  F  DL++ NSL+HFY++CG    A  VF  +  +DVVSW  +ISG+V+ 
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRT 184

Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN--------------- 263
           G F++AI L+ +M+   V P+  T V+VL AC +   L  G+  +               
Sbjct: 185 GLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVG 241

Query: 264 --------------EALSIFHEL-------------------------------QLSKNV 278
                         EA  +F EL                               Q+S  V
Sbjct: 242 NALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS-GV 300

Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
            PD     SVLSACA LGA+D G  +   +++QGI+ + ++ T+L+DMY KCG ++ AL 
Sbjct: 301 EPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALH 360

Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
           +F+ + +R++F W+ ++ G AM+G G EAL  F  M  A ++PN VTF  +L AC HSGL
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGL 420

Query: 399 VDEGRMFFNQM--EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA 456
           V EGR +F QM  +P +   P ++HY CM+D+L RAGLLDEA +FI  MP+ P   +WGA
Sbjct: 421 VAEGRSYFYQMISQP-FNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGA 479

Query: 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516
           LL ACK + NVEL++   SHLLEL+ ++ G  VLLSNIYA   +WD+V+ +R+ M+  G+
Sbjct: 480 LLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGI 539

Query: 517 KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLD 552
           +K PG S IEV+GE H+FL G+++H   ++I+  L+
Sbjct: 540 RKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLN 575


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/642 (35%), Positives = 343/642 (53%), Gaps = 70/642 (10%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSAS---------------KLFTPCAL--- 82
           V   +   +++K  +QIH   ++ G      + +               K FT  AL   
Sbjct: 98  VLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAM 157

Query: 83  -GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141
                 ++ ++ +F+     ++ +WNT+I ++S S    ++   F  +V       +  T
Sbjct: 158 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVEL-DGVT 216

Query: 142 FPFVIKAAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200
              V+ A + L +  VG+ IH  V++++   ++ F+ ++L+  Y  C  +     VF  I
Sbjct: 217 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 276

Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR 260
             + +  WN+MISG+ + G  EKA+ L+ EM         + +  +L             
Sbjct: 277 LGRRIELWNAMISGYARNGLDEKALILFIEM---------IKVAGLL------------- 314

Query: 261 WPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYL 319
                              P+  T  SV+ AC   L A+  G +IHA   +  +  +  +
Sbjct: 315 -------------------PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITV 355

Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM----- 374
            ++L+DMY KCG L+ +  VF+ + +++V  W+ +I    M+G G EAL+LF  M     
Sbjct: 356 GSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAG 415

Query: 375 QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434
           +  + KPN VTF  V  ACSHSGL+ EG   F +M+  +GV P   HY C+VD+LGRAG 
Sbjct: 416 RGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQ 475

Query: 435 LDEAVEFIEKMPI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493
           L+EA E +  MP        W +LLGAC+IH+NVEL E A  +LL LEP      VLLSN
Sbjct: 476 LEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSN 535

Query: 494 IYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553
           IY+  G W+   E+RK+MR  G+KKEPGCS IE   E+HKF+AG+ SHP  ++++  L+ 
Sbjct: 536 IYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLET 595

Query: 554 IVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLR 613
           +  +++  GYVP+ S +L  V +ED +E  L  HSE+LAIA+G+++  P   IR+ KNLR
Sbjct: 596 LSEKMRKEGYVPDTSCVLHNV-DEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLR 654

Query: 614 VCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           VC DCH   K ISK+  REI++RD  RFHHF+ G CSC DYW
Sbjct: 655 VCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 169/400 (42%), Gaps = 77/400 (19%)

Query: 99  PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
           P  +  +W   +R+ + S +  ++   ++++   S   P+ F FP V+KA + L   + G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 159 QAIHGMVIKSSFE---------------------DDLFISNSLIHFYAICGDLAMAYCVF 197
           + IH   +K  +                      D  F +N+L+  YA  G +  +  +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257
                +D+VSWN+MIS F Q   F +A+  +R M +E                       
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG---------------------- 209

Query: 258 FGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK-MKKQGIKLN 316
                               V  D  T  SVL AC+ L  +D+G +IHA  ++   +  N
Sbjct: 210 --------------------VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 249

Query: 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-Q 375
            ++ ++L+DMY  C  ++    VF  +  R + +W+ MI+G+A  G   +AL LF  M +
Sbjct: 250 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 309

Query: 376 EAKVKPNAVTFTNVLCACSHS-GLVDEGRMFFNQMEPVYGV----VPGVKHYTCMVDMLG 430
            A + PN  T  +V+ AC HS   + +G+         Y +       +   + +VDM  
Sbjct: 310 VAGLLPNTTTMASVMPACVHSLAAIAKGKEIH-----AYAIRNMLASDITVGSALVDMYA 364

Query: 431 RAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
           + G L+ +     +MP       W  L+ AC +H   E A
Sbjct: 365 KCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEA 403


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/708 (31%), Positives = 366/708 (51%), Gaps = 81/708 (11%)

Query: 19  LPRHPNPTTLTVNNGHQHHPHPVFSLIK---QCKNIKQLKQIHTQMLRTGLFFDPYSASK 75
           +P    P  L  N      P  +  L+K     KN+K  K IH+ ++ T       + + 
Sbjct: 10  VPFRHAPFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVT----SRATENS 65

Query: 76  LFTPCALGTF----SSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131
           +    +L  F    + +  A  +FD++P+ N+ +W+ L+  Y  +   ++   +   ++ 
Sbjct: 66  IIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMIS 125

Query: 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191
                PNE+     I +     +   G+  HG+++K+ F    ++ N+L+  Y+ C  + 
Sbjct: 126 EGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQ 185

Query: 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251
            A  V+  +   D+V++NS++S  V+ G+  + +E+ R M  E+VK D+VT V   S CA
Sbjct: 186 DAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCA 245

Query: 252 KKRDLEFG---------------RWPNEAL--------------SIFHELQLSKNVNPDE 282
             +DL  G                + + A+               +F  LQ S+NV    
Sbjct: 246 SLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQ-SRNV---- 300

Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY------------------------ 318
             + +V+++C Q G  +  + + +KM+++ +K N +                        
Sbjct: 301 VLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGH 360

Query: 319 -----------LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
                      +  +LI+MY K G+++ A +VF  +  RD+  W+ MI GF+ +G G++A
Sbjct: 361 SEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKA 420

Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
           L +F  M  A+  PN VTFT VL AC H GLV EG  + + +   +GV PG++HYTC+V 
Sbjct: 421 LLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVS 480

Query: 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487
           +L + G L+EA  F+   P+      W  LL AC +H+N  L  +    +LE++P + G 
Sbjct: 481 LLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGT 540

Query: 488 LVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEI 547
             LLSNIYAK  +WD V ++RK MR   +KKEPG S IE+    H F + ++ HP   + 
Sbjct: 541 YTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQT 600

Query: 548 YSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIR 607
           Y K+ E++A +K  GY P+   +L  VE+E  +E  L+ HSE+LAIAYGL+ +     I 
Sbjct: 601 YQKVKELLAMIKPLGYTPDIGAVLHDVEDEQ-KEYYLSYHSEKLAIAYGLLKLPSEASIL 659

Query: 608 IVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
           ++KNLR+C DCH+  +LISK+ NR I++RD  RFHHFR G CSC+DYW
Sbjct: 660 VIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/605 (35%), Positives = 342/605 (56%), Gaps = 55/605 (9%)

Query: 55  KQIHTQML----RTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110
           +Q+H +M+    R  +F      + ++  C      +L+ AR + D++P+ ++ +W T+I
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVT-MYVRCG-----ALDDARNVLDRMPERSVVSWTTMI 83

Query: 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF 170
             YS +   +++  +F++++  +   PNE+T   V+ + +       G+ +H +++K++F
Sbjct: 84  SGYSQTERHVEALDLFIKML-RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNF 142

Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
           E  +F+ +SL+  YA   ++  A  VF  + ++DVVS  ++ISG+ Q G  E        
Sbjct: 143 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE-------- 194

Query: 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS 290
                                            EAL +F +L  S+ +  +  TF ++++
Sbjct: 195 ---------------------------------EALDLFRQL-YSEGMQCNHVTFTTLVT 220

Query: 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV 350
           A + L ++D G Q+HA + ++ +     L  SLIDMY+KCG L  +  VF  +  R V  
Sbjct: 221 ALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVS 280

Query: 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410
           W+ M+ G+  +G G E + LF  + + +VKP++VT   VL  CSH GLVDEG   F+ + 
Sbjct: 281 WNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVV 339

Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470
                +    HY C++D+LGR+G L++A+  IE MP     S+WG+LLGAC++H NV + 
Sbjct: 340 KEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVG 399

Query: 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGE 530
           E     LLE+EPEN G  V+LSNIYA  G W +V ++RK M    + KEPG S I ++  
Sbjct: 400 ELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKV 459

Query: 531 IHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSER 590
           IH F + E  HP  K+I +K+ EI   +K+ G+VP+ S +L  V++E  +E+ L  HSE+
Sbjct: 460 IHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQ-KERMLLGHSEK 518

Query: 591 LAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650
           LAI +GL++  P   IR++KNLR+C DCH  AK +SK+Y REI LRD+ RFH    GNC+
Sbjct: 519 LAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCT 578

Query: 651 CMDYW 655
           C DYW
Sbjct: 579 CGDYW 583



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 10/221 (4%)

Query: 49  KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNT 108
           ++I Q KQ+H+ +++T      +  S L    A     +++ AR +FD +P+ ++ +   
Sbjct: 125 QSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA--KSENIQEARRVFDTLPERDVVSCTA 182

Query: 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168
           +I  Y+      ++  +F QL Y+     N  TF  ++ A + L     G+ +H ++++ 
Sbjct: 183 IISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRK 241

Query: 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228
                + + NSLI  Y+ CG L  +  VF  + ++ VVSWN+M+ G+ + G   + I L+
Sbjct: 242 ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLF 301

Query: 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269
           +++  E VKPD VT++AVLS C+       G   +E L IF
Sbjct: 302 KDLHKE-VKPDSVTLLAVLSGCSH------GGLVDEGLDIF 335



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%)

Query: 285 FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344
           + + ++AC +  A+  G Q+HA+M     +   +L T L+ MY +CG LD A  V   + 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403
            R V  W+TMI+G++      EALDLF +M  A   PN  T   VL +CS    + +G+
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGK 131


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/627 (37%), Positives = 356/627 (56%), Gaps = 26/627 (4%)

Query: 41  VFSLIKQCKNIKQLKQIHTQMLRTGL--FFDPYSASKLF--TPCALGTFSSLEYAREMFD 96
           + + +    +++ L+ +H  ++R  L     P+  S+L           + L YA  +F 
Sbjct: 40  LLAAVDSSPSLRHLRHLHALLIRLPLPPRSLPFILSRLLRRLAALPPPHAPLPYALSVFA 99

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-----PYFPNEFTFPFVIKAAAR 151
            +  P+ +    L+R    +  P+  F +F +++  +     P+ P  F F  + K+AA 
Sbjct: 100 ALSPPDPFLAAALLRFALLTQPPLSPFHLFSRILRTARGGELPFLP--FAFSPLAKSAAA 157

Query: 152 LVQFRVGQAIHGM-VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
                  QA H +  +   F+   F+ NSLI  Y  CGD+  A  VF  +  KDV+ W S
Sbjct: 158 ARSLPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTS 217

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270
           ++  + +      A E++ +  ++    D V   A+++  A+         P +AL +F 
Sbjct: 218 IVVAYSRSRDMGSAEEVFGQCPVK----DMVAWTAMVTGYAQNA------MPMKALEVFD 267

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
            +  +  +  DE +    +SACAQLGA+     +    +  G  +N  + + L+DMY KC
Sbjct: 268 RMT-ALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKC 326

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRM-QEAKVKPNAVTFTNV 389
           G +D+A +VF  ++ ++V+ +S+M+ G A +G  REA+ LF  M + A V PN VTF  V
Sbjct: 327 GLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGV 386

Query: 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449
           L ACSH+G+V +GR +F QM+  YG++P   HYTCMVD+LGRAGL+DEA++ +  M + P
Sbjct: 387 LTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEP 446

Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
              VWGALLGAC+IH   E+A+ A  HL +LEPE  G  VLLSN  A  GKWD VS++RK
Sbjct: 447 HGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRK 506

Query: 510 HMRVSGLKKEPGCSSIE-VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
            MR   LKK P  S  E  +G +H+F AG++SHP  +EI   L E+VA+LK  GYVP  S
Sbjct: 507 VMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTREIKKALLELVAKLKHAGYVPILS 566

Query: 569 HLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
            ++  V  E+ +E+ L  HSE+LA+ +GL+++     IRIVKNLR+C DCH   +L+S+ 
Sbjct: 567 SIVYDVSNEE-KERLLMGHSEKLALLFGLLTLGSRCTIRIVKNLRICDDCHLFIRLVSRF 625

Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
              EI++RD  RFHHF+ G CSC  +W
Sbjct: 626 EPVEIIVRDNMRFHHFKDGECSCGGFW 652


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 322/574 (56%), Gaps = 61/574 (10%)

Query: 42  FSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQP 101
            S + +C N+ Q+KQ+H Q+L++ L  D +   KL +  A      +  A   F+Q+  P
Sbjct: 24  LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS--AFSLCRQMLLATNAFNQVQYP 81

Query: 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161
           N++ +NT+IRA+S +++P Q+F  F  +  +  Y  N FTFPF++K     V   V +++
Sbjct: 82  NVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADN-FTFPFLLKVCTGNVWLPVIESV 140

Query: 162 HGMVIKSSFEDDLFISNSLIHFYAICGD--LAMAYCVFVMIG-KKDVVSWNSMISGFVQG 218
           H  + K  F  D+F+ NSLI  Y+ CG   ++ A  +FV +G ++DVVSWNSMISG  +G
Sbjct: 141 HAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKG 200

Query: 219 GFFEKAIELYREMEME-----NVKPDEVTMVA-----------------------VLSAC 250
           G +E+A +++ EM  +     N   D    V                        VL  C
Sbjct: 201 GLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYC 260

Query: 251 AKKRDLEFGR-------------W------------PNEALSIFHELQLSKNVNPDEFTF 285
            K  D+E  R             W              EA+S+F +++    +  D  T 
Sbjct: 261 -KAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQME-KACLKLDNGTV 318

Query: 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345
           +S+L+ACA+ G + +G +IHA +K    K    ++ +L+DMY KCG L+ A +VF+ +K+
Sbjct: 319 MSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKN 378

Query: 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405
           +DV  W+ M+ G AM+G G +AL+LF RM+E    PN VT   VLCAC+H+GL+D+G  +
Sbjct: 379 KDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRY 438

Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
           F+ ME  Y +VP V+HY CMVD+LGR G L+EA+  I  MP+ P A +WG LLGAC++H 
Sbjct: 439 FSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHN 498

Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
            VELA     HL+ELEP + G   +LSNIYA  G W+ V+  R  MR  G KK  G SSI
Sbjct: 499 AVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSI 558

Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
           EVN E+H+F   + SHP    IY  ++ +   LK
Sbjct: 559 EVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELK 592


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 298/482 (61%), Gaps = 13/482 (2%)

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGF 215
           +G  +H + +K+    DLF+ N+L+HFY + GD+     VF  + + +DV++WN +++G+
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           V+ G    A E++ EM +     DE++   ++    K+ +LE       AL +F  + + 
Sbjct: 224 VRAGMMTVAREVFDEMPVR----DEISWSTLVGGYVKEEELEV------ALGVFRNM-VE 272

Query: 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335
           + V P++   V+ LSA A+LG ++ G  +H  +++ G+ +   +  +L+DMY KCG +  
Sbjct: 273 QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAV 332

Query: 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
           A EVF  ++ RDVF W+ MI G A +G GR+A++LF R     + P  VTF  VL  CS 
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSR 392

Query: 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWG 455
           SGLV EGR +F  +   Y + P ++HY CMVD+LGRAGL+ EA+E IE M I P   +WG
Sbjct: 393 SGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWG 452

Query: 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515
            +L +CK H  V+L     + L+EL+P + G  VLLS IYAK  KWD V E+RK M   G
Sbjct: 453 TILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRG 512

Query: 516 LKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVE 575
             K  G S +E +G++HKFL G++ H    +IY  LD I  RL   GYVP+ S +L  + 
Sbjct: 513 TNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIG 572

Query: 576 EEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILL 635
           EE+ +  A+ +HSERLAIAYG I +E   PIRIVKNLRVCGDCH  +K+++ ++ REI++
Sbjct: 573 EEE-KVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIV 631

Query: 636 RD 637
           RD
Sbjct: 632 RD 633



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 39/302 (12%)

Query: 88  LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147
           +  ARE+FD++P  +  +W+TL+  Y    E   +  +F  +V      PN+      + 
Sbjct: 229 MTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQG-VRPNQAAVVTALS 287

Query: 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVS 207
           AAARL     G+ +H +V +S     + +  +L+  YA CG +A+A  VF  + ++DV +
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFA 347

Query: 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW------ 261
           WN+MI G    G    A+EL+     E + P  VT V VL+ C++   +  GR       
Sbjct: 348 WNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIV 407

Query: 262 ------PN------------------EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297
                 P                   EA+ +   + ++    PD   + ++LS+C   G 
Sbjct: 408 EKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIA----PDPVLWGTILSSCKTHGL 463

Query: 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV---FVWSTM 354
           +D+GV +  K+ +     + Y    L  +Y K    D+  EV   + SR       WS M
Sbjct: 464 VDLGVSVGNKLIELDPTHSGYYVL-LSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLM 522

Query: 355 IA 356
            A
Sbjct: 523 EA 524


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/535 (38%), Positives = 307/535 (57%), Gaps = 35/535 (6%)

Query: 122 SFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
           S    L L  + P   PN FT+P + +AA   +   +       +   +   D  +  +L
Sbjct: 105 SLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAAL 164

Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
           +  +A CG +A    VF  I   D+ +WN+++S + +                       
Sbjct: 165 LGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYAR----------------------- 201

Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
                      + RD+       +A+       LS  + P+E T V+V+ AC +LGA+  
Sbjct: 202 ----------LRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGELGAVSH 251

Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
           GV  H    K+ + +NC + T+L++MY  CG LD A +VF     RD   ++ M+ G A+
Sbjct: 252 GVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAV 311

Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
           +G GR AL L  RM  A V  + VT  +V+CAC+H+GLVDEG  +F++ME  +G+ P ++
Sbjct: 312 HGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIE 371

Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
           HY CM+DML RAG L+ A + I +M IVP A+++ +L+ AC IH  +EL E   + L+ L
Sbjct: 372 HYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRL 431

Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
           EP++ G  VL+SN YA+T +W++  + RK M+  G+ K PG S +++NG +H+FL G+ +
Sbjct: 432 EPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKT 491

Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
           HP  KEIY+ ++EI  RL   G   + S  L  VEEED +   L+ HSERLAIA+ LI+ 
Sbjct: 492 HPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEED-KADTLSYHSERLAIAFALIAS 550

Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
            P  PIRI+KNLRVC DCH  AKL+S++Y REI++RDR RFHHFR G CSC D+W
Sbjct: 551 NPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 605



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 123/291 (42%), Gaps = 55/291 (18%)

Query: 67  FFDPYSAS--KLFTPCALGTFSS---LEYAREMFDQIPQPNLYTWNTLIRAY-------- 113
           F   ++AS  ++     LG F+    +   R +FD+I  P+L  WN L+ AY        
Sbjct: 148 FLGAHAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDV 207

Query: 114 ---SSSAEPI-QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
              +S+A+ I + F+  L L       PNE T   VI A   L     G   H   +K  
Sbjct: 208 ACATSAADAILELFVRMLSLAIE----PNEITLVAVIGACGELGAVSHGVWAHTYAVKRR 263

Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
              +  ++ +L+  YA CG L +A  VF     +D   +N+M+ G    G    A+ L  
Sbjct: 264 LAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLD 323

Query: 230 EMEMENVKPDEVTMVAVLSACA------------KKRDLEFGRWP--------------- 262
            M    V  D VT+++V+ ACA             + ++EFG  P               
Sbjct: 324 RMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRA 383

Query: 263 ---NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
              N A  + HE+     + P+   + S++ AC   G +++G ++ A++ +
Sbjct: 384 GRLNNAEKLIHEML----IVPNAAIYRSLIRACGIHGKLELGEKMIAELMR 430



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 12/150 (8%)

Query: 265 ALSIFHELQLSKN---VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321
           ALS++  L LS +   + P+ FT+  +  A     A+ +       +       +  L  
Sbjct: 103 ALSLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGA 162

Query: 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY-----GCGREA----LDLFS 372
           +L+ ++ +CG +     VF  +   D+  W+ +++ +A        C   A    L+LF 
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222

Query: 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
           RM    ++PN +T   V+ AC   G V  G
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHG 252


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 305/523 (58%), Gaps = 23/523 (4%)

Query: 38  PHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF-SSLEYAREMFD 96
           P P+ S  ++ K++ +++Q H  ML+TGLF D +SASKL    A      ++ YA  + +
Sbjct: 9   PVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILN 68

Query: 97  QIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
           +I  PN +T N++IRAY++S+ P  +  +F +++   P FP++++F FV+KA A    F 
Sbjct: 69  RIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLG-PVFPDKYSFTFVLKACAAFCGFE 127

Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216
            G+ IHG+ +KS    D+F+ N+LI+ Y   G   +A  V   +  +D VSWNS++S ++
Sbjct: 128 EGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYL 187

Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE-FGRWP------------- 262
             G  E+A  L+ EME  NV+     +    +A   K   E F   P             
Sbjct: 188 DKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTA 247

Query: 263 -------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL 315
                  NE L +F+ +       PD FT V+VLSACA LG++  G  +H  + K GI++
Sbjct: 248 YAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEI 307

Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
             ++ T+L+DMY+KCG +DKALEVF     RDV  W+++I G +++G G++AL++FS M 
Sbjct: 308 EGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMV 367

Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
               KPN +TF  VL AC+H GL+D+ R  F  M  VYG+ P ++HY CMVD+LGR G  
Sbjct: 368 YEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKF 427

Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
           +EA E + ++P    + +  +LLGACK    +E AE   + LLE  P      V +SN+Y
Sbjct: 428 EEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLY 487

Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
           A  G+WD   E+R  MR   +KK PGCS IEV+G +H+FLAGE
Sbjct: 488 ASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAGE 530


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/686 (35%), Positives = 366/686 (53%), Gaps = 80/686 (11%)

Query: 38  PHPVFSLIKQC---KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREM 94
            H    L++QC   ++I  +K I  QML++G F    S SKL    A      + YAR++
Sbjct: 47  THTFSQLLRQCIDERSISGIKNIQAQMLKSG-FPVELSGSKLVD--ASLKCGEIGYARQL 103

Query: 95  FDQIPQPNLYTWNTLIRAY---SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151
           FD +P+ ++ TWN++I  Y     S E ++ +    +L+ ++   P+E+T   V KA + 
Sbjct: 104 FDGMPERHIVTWNSIIAYYIKHRRSKEAVEMY----RLMISNNVLPDEYTLSSVFKAFSD 159

Query: 152 LVQFRVGQAIHGMVIKSSFE-DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
           L   +  Q  HG+ +    E  ++F+ ++L+  Y   G    A  V   + +KDVV   +
Sbjct: 160 LSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITA 219

Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGR---------- 260
           +I G+ Q G   +A++ ++ M +E V+P+E T  +VL +C   +D+  G+          
Sbjct: 220 LIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSG 279

Query: 261 --------------------------------WPNE------------------ALSIFH 270
                                           +PN+                  AL  F 
Sbjct: 280 FESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFR 339

Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
           ++ +  +V P+ FT  S L  C+ L   + G Q+H  + K G   + Y  + LI++Y KC
Sbjct: 340 KM-MRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKC 398

Query: 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390
           G  D A  VF T+   DV   +TMI  +A  G GREAL+LF RM    ++PN VT  +VL
Sbjct: 399 GCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVL 458

Query: 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG 450
            AC++SGLV+EG   F+       ++    HY CMVDMLGRAG L+EA   I ++   P 
Sbjct: 459 LACNNSGLVEEGCELFDSFRK-DKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPD 516

Query: 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510
             +W  LL ACK+H  VE+AE     +LE+ P + G L+LLSN+YA TGKW  V E++  
Sbjct: 517 LVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSK 576

Query: 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSH 569
           M+   LKK P  S +E++ E H F+AG+  SHP  ++I   L+E++ + K  GYV ++S 
Sbjct: 577 MKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSC 636

Query: 570 LLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLY 629
           + Q +EE   +E++L+ HSE+LAIA+ +        IRI+KNLRVC DCH+  K++S++ 
Sbjct: 637 VFQDMEET-AKERSLHQHSEKLAIAFAVWR-NVGGSIRILKNLRVCVDCHSWIKIVSRII 694

Query: 630 NREILLRDRYRFHHFRGGNCSCMDYW 655
            REI+ RD  RFHHFR G+CSC DYW
Sbjct: 695 KREIICRDSKRFHHFRDGSCSCGDYW 720



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 54/329 (16%)

Query: 35  QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFT---PCALGTFSSL 88
           Q + +   S++  C N+K +   K IH  M+++G      S + L T    C+L   S L
Sbjct: 246 QPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLL 305

Query: 89  EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148
                +F  I  PN  TW +LI     +     + + F +++ +S   PN FT    ++ 
Sbjct: 306 -----VFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVK-PNSFTLSSALRG 359

Query: 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW 208
            + L  F  G+ +HG+V K  F+ D +  + LI  Y  CG   MA  VF  + + DV+S 
Sbjct: 360 CSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISL 419

Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
           N+MI  + Q GF  +A+EL+  M    ++P++VT+++VL AC                  
Sbjct: 420 NTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNS--------------- 464

Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
                                      G ++ G ++    +K  I L       ++DM  
Sbjct: 465 ---------------------------GLVEEGCELFDSFRKDKIMLTNDHYACMVDMLG 497

Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAG 357
           + G L++A  +   V + D+ +W T+++ 
Sbjct: 498 RAGRLEEAEMLITEVTNPDLVLWRTLLSA 526


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 316/527 (59%), Gaps = 22/527 (4%)

Query: 44  LIKQCKNIKQLKQIHTQMLRTGLFFDP---YSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
           LI+QCKN+++LK+ HTQ+L++         Y  ++L   C+   + S  YA  +F  I  
Sbjct: 24  LIEQCKNLRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKN 83

Query: 101 PNLYTWNTLIRAYSS-----SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155
           P+L  +N +IRAY S          ++ M++ Q+ +     PN  TFPF++K   + +  
Sbjct: 84  PDLRAYNIMIRAYISMESGDDTHFCKALMLYKQM-FCKDIVPNCLTFPFLLKGCTQWLDG 142

Query: 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGF 215
             GQAIH  VIK  F  D++++NSLI  Y   G L+ A  VF  +   DVV+WNSM+ G 
Sbjct: 143 ATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGC 202

Query: 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275
           ++ G  + A++L+R+M   N+    +T  ++++  A+      G    E+L +FHE+Q+ 
Sbjct: 203 LRNGGLDMAMDLFRKMNGRNI----ITWNSIITGLAQ------GGSAKESLELFHEMQIL 252

Query: 276 KN--VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
            +  V PD+ T  SVLSACAQLGA+D G  +H  +++ GI+ +  + T+L++MY KCG++
Sbjct: 253 SDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDV 312

Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
            KA E+F  +  +D   W+ MI+ FA++G G +A + F  M++A VKPN VTF  +L AC
Sbjct: 313 QKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSAC 372

Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
           +HSGLV++GR  F+ M+ VY + P V HY CMVD+L RA L DE+   I  MP+ P   V
Sbjct: 373 AHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYV 432

Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
           WGALLG C++H NVEL E    HL++LEP NH   V   +IYAK G +D    +R  M+ 
Sbjct: 433 WGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKE 492

Query: 514 SGL-KKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559
             + KK PGCS IE+NGE+ +F AG SS    KE+   L+ +   +K
Sbjct: 493 KRIEKKIPGCSMIEINGEVQEFSAGGSSELPMKELVLVLNGLSNEMK 539


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,138,375,092
Number of Sequences: 23463169
Number of extensions: 413465257
Number of successful extensions: 1104599
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8518
Number of HSP's successfully gapped in prelim test: 3622
Number of HSP's that attempted gapping in prelim test: 920644
Number of HSP's gapped (non-prelim): 59185
length of query: 655
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 506
effective length of database: 8,863,183,186
effective search space: 4484770692116
effective search space used: 4484770692116
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)