BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035659
(655 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OKT|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Ligand-Free Form
pdb|2OLA|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Cubic Crystal Form
Length = 342
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE--AKVKPNAVTF 386
+ G +DK T+KS V +I G YG R + +R + V P F
Sbjct: 247 RLGGIDKVQTAIDTLKSHGAKV---VIGGMYEYGLSRYFTAMLARKGDYPGDVTPAGYYF 303
Query: 387 TNVLCACSHSGLVDEGRMFF-------NQMEPVYG 414
+ A HSG++ EGR+ F Q++P G
Sbjct: 304 EQDVVA--HSGILKEGRLEFRPPLVDITQLQPYEG 336
>pdb|3H70|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus Complexed With Mg In The
Active Site
Length = 343
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE--AKVKPNAVTF 386
+ G +DK T+KS V +I G YG R + +R + V P F
Sbjct: 248 RLGGIDKVQTAIDTLKSHGAKV---VIGGMYEYGLSRYFTAMLARKGDYPGDVTPAGYYF 304
Query: 387 TNVLCACSHSGLVDEGRMFF-------NQMEPVYG 414
+ A HSG++ EGR+ F Q++P G
Sbjct: 305 EQDVVA--HSGILKEGRLEFRPPLVDITQLQPYEG 337
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 304 IHAKMKKQGIKLNC-YLTTSLIDMYTKCGNLDKALEVFHTVKSR---------DVFVWST 353
+ K KK+ I+ + L +DM +K G++ +AL ++ + +V ++
Sbjct: 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC 71
Query: 354 MIAGFAMYGCGREAL----DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409
+A A L D+F +M KV PN TFTN + D+ M F+ +
Sbjct: 72 SLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN---GARLAVAKDDPEMAFDMV 128
Query: 410 EPV--YGVVPGVKHYTCMVDMLGRAGLLDEAVE 440
+ + +G+ P ++ Y + R G D+A E
Sbjct: 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
+ E AE C L EP+N G L+LLS+I+ + + D + H +K+ P +
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSA----HFSTLAIKQNPLLAEA 69
Query: 526 EVN-GEIHK 533
N G ++K
Sbjct: 70 YSNLGNVYK 78
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 431 RAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
+ G DEA+E+ +K + + P A W L A + + A LEL+P N A
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 489 VLLSNIYAKTGKWDNVSE 506
L N Y K G +D E
Sbjct: 81 YNLGNAYYKQGDYDEAIE 98
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 431 RAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
+ G DEA+E+ +K + + P A W L A + + A LEL P N A
Sbjct: 21 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Query: 489 VLLSNIYAKTGKWDNVSE 506
L N Y K G +D E
Sbjct: 81 YNLGNAYYKQGDYDEAIE 98
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 431 RAGLLDEAVEFIEK-MPIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
+ G DEA+E+ +K + + P A W L A + + A LEL+P + A
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72
Query: 489 VLLSNIYAKTGKWDNVSE 506
L N Y K G +D E
Sbjct: 73 YNLGNAYYKQGDYDEAIE 90
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 431 RAGLLDEAVEFIEK-MPIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
+ G DEA+E+ +K + + P A W L A + + A LEL+P + A
Sbjct: 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Query: 489 VLLSNIYAKTGKWDNVSE 506
L N Y K G +D E
Sbjct: 107 YNLGNAYYKQGDYDEAIE 124
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 530 EIHKFLAGESSHPLC-KEIYSKLDEIVARLKSFGY 563
EI K LA SH +C D +V +KSFGY
Sbjct: 59 EIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,119,313
Number of Sequences: 62578
Number of extensions: 764204
Number of successful extensions: 1692
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1689
Number of HSP's gapped (non-prelim): 13
length of query: 655
length of database: 14,973,337
effective HSP length: 105
effective length of query: 550
effective length of database: 8,402,647
effective search space: 4621455850
effective search space used: 4621455850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)