Query 035659
Match_columns 655
No_of_seqs 796 out of 4785
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-119 3E-124 1027.2 67.4 616 30-653 179-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-117 3E-122 986.5 65.3 577 33-655 118-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.3E-73 1.1E-77 644.8 48.5 593 33-650 81-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.6E-64 9.9E-69 560.4 52.9 509 35-568 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-62 3.1E-67 548.4 51.0 470 35-521 403-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.8E-58 1E-62 510.1 44.1 490 100-649 84-582 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-31 3.2E-36 219.5 8.4 106 521-645 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.9E-26 2.2E-30 262.0 50.8 425 71-515 432-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-25 7.6E-30 257.4 51.0 456 38-514 363-832 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 2.1E-20 4.6E-25 185.7 31.6 380 102-503 115-508 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 5.5E-19 1.2E-23 175.7 32.5 412 81-514 59-485 (966)
12 PRK11447 cellulose synthase su 99.9 1.5E-17 3.4E-22 194.8 50.0 439 55-514 48-666 (1157)
13 PRK11447 cellulose synthase su 99.9 8.3E-18 1.8E-22 197.1 46.7 419 78-517 277-744 (1157)
14 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.8E-23 180.7 31.1 299 183-521 44-354 (389)
15 PRK11788 tetratricopeptide rep 99.8 4.5E-18 9.7E-23 177.6 31.4 294 113-420 45-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 6.8E-17 1.5E-21 177.8 41.9 389 106-514 130-571 (615)
17 PRK09782 bacteriophage N4 rece 99.8 4.3E-16 9.2E-21 174.7 47.4 445 55-515 64-707 (987)
18 PRK10049 pgaA outer membrane p 99.8 9.2E-16 2E-20 172.0 42.0 188 327-514 247-456 (765)
19 PRK15174 Vi polysaccharide exp 99.8 5.9E-16 1.3E-20 169.9 39.4 324 109-484 48-385 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-15 4.6E-20 166.0 43.1 410 75-513 132-596 (615)
21 PRK15174 Vi polysaccharide exp 99.8 1.7E-15 3.7E-20 166.3 40.8 319 76-412 48-381 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.7E-20 169.9 41.4 407 70-488 15-464 (765)
23 PRK14574 hmsH outer membrane p 99.8 2.7E-14 5.7E-19 157.2 45.0 418 80-514 44-513 (822)
24 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.5E-18 131.6 39.9 401 40-481 118-591 (625)
25 PRK09782 bacteriophage N4 rece 99.7 2.2E-13 4.7E-18 153.2 48.0 450 45-516 189-742 (987)
26 PRK14574 hmsH outer membrane p 99.7 3.3E-12 7.2E-17 140.8 44.4 421 55-487 54-520 (822)
27 KOG2002 TPR-containing nuclear 99.6 9.5E-13 2.1E-17 138.8 33.5 431 68-514 268-745 (1018)
28 KOG2002 TPR-containing nuclear 99.6 2.8E-11 6E-16 128.0 39.6 460 41-516 165-677 (1018)
29 KOG2003 TPR repeat-containing 99.6 1.2E-12 2.6E-17 126.3 26.4 382 106-500 279-709 (840)
30 KOG0547 Translocase of outer m 99.6 1.5E-11 3.2E-16 120.4 31.3 385 108-512 120-564 (606)
31 KOG4422 Uncharacterized conser 99.6 3.2E-11 7E-16 116.1 32.5 339 171-517 204-593 (625)
32 KOG2076 RNA polymerase III tra 99.5 1.9E-11 4.1E-16 128.4 31.2 315 153-513 153-511 (895)
33 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.6E-14 108.5 43.3 452 53-528 394-892 (913)
34 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.4E-18 136.9 10.8 257 245-513 13-276 (280)
35 PRK10747 putative protoheme IX 99.4 2.2E-10 4.8E-15 118.7 31.5 123 382-510 262-386 (398)
36 KOG2076 RNA polymerase III tra 99.4 1.6E-09 3.5E-14 114.2 36.4 347 80-442 150-549 (895)
37 TIGR00540 hemY_coli hemY prote 99.4 3.3E-10 7.2E-15 118.1 31.3 281 187-479 97-398 (409)
38 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.8E-17 129.3 12.4 252 148-410 17-275 (280)
39 KOG1126 DNA-binding cell divis 99.4 5.6E-11 1.2E-15 121.2 23.3 278 220-514 334-620 (638)
40 KOG1173 Anaphase-promoting com 99.4 3.8E-10 8.3E-15 112.9 28.3 427 66-513 45-517 (611)
41 PRK10747 putative protoheme IX 99.4 4.5E-10 9.7E-15 116.5 29.8 128 347-480 262-390 (398)
42 KOG1126 DNA-binding cell divis 99.4 3.7E-11 8E-16 122.6 20.9 244 262-514 335-586 (638)
43 KOG2003 TPR repeat-containing 99.4 1.7E-10 3.7E-15 111.7 22.7 401 105-514 200-689 (840)
44 KOG1915 Cell cycle control pro 99.4 9.2E-09 2E-13 100.7 34.3 354 150-516 118-502 (677)
45 KOG4318 Bicoid mRNA stability 99.4 1.6E-09 3.5E-14 113.5 30.9 467 29-524 16-603 (1088)
46 KOG1155 Anaphase-promoting com 99.4 2.3E-09 5E-14 104.7 29.8 328 170-513 160-494 (559)
47 KOG0495 HAT repeat protein [RN 99.4 5.9E-08 1.3E-12 98.8 40.4 441 55-524 366-854 (913)
48 KOG1155 Anaphase-promoting com 99.3 5.4E-09 1.2E-13 102.2 31.2 358 136-511 161-533 (559)
49 TIGR00540 hemY_coli hemY prote 99.3 1.3E-09 2.7E-14 113.8 29.2 284 116-444 97-395 (409)
50 KOG4318 Bicoid mRNA stability 99.3 3.5E-10 7.6E-15 118.4 23.5 249 125-398 12-286 (1088)
51 PF13041 PPR_2: PPR repeat fam 99.3 7.3E-12 1.6E-16 87.1 6.2 50 203-252 1-50 (50)
52 TIGR02521 type_IV_pilW type IV 99.3 7.3E-10 1.6E-14 106.3 22.5 198 315-513 29-231 (234)
53 COG2956 Predicted N-acetylgluc 99.3 4.6E-09 1E-13 98.2 25.0 305 219-534 49-367 (389)
54 COG3071 HemY Uncharacterized e 99.2 2.8E-08 6E-13 96.0 29.7 278 187-478 97-388 (400)
55 COG2956 Predicted N-acetylgluc 99.2 1.6E-08 3.4E-13 94.6 26.9 278 105-429 38-325 (389)
56 KOG1840 Kinesin light chain [C 99.2 3.6E-09 7.8E-14 109.3 25.1 243 240-513 199-478 (508)
57 PF13041 PPR_2: PPR repeat fam 99.2 3.5E-11 7.6E-16 83.6 6.6 50 346-395 1-50 (50)
58 KOG1915 Cell cycle control pro 99.2 3.8E-07 8.2E-12 89.7 36.3 439 55-513 93-624 (677)
59 COG3071 HemY Uncharacterized e 99.2 2.2E-08 4.8E-13 96.6 26.6 278 218-513 97-389 (400)
60 KOG2047 mRNA splicing factor [ 99.2 7.4E-07 1.6E-11 90.9 38.2 425 77-514 109-687 (835)
61 PRK12370 invasion protein regu 99.1 1.4E-08 3E-13 110.1 25.9 243 262-515 277-536 (553)
62 KOG4162 Predicted calmodulin-b 99.1 3.1E-07 6.8E-12 95.7 33.2 423 66-514 319-783 (799)
63 TIGR02521 type_IV_pilW type IV 99.1 3.3E-08 7.1E-13 94.7 23.5 200 280-482 29-234 (234)
64 KOG1840 Kinesin light chain [C 99.1 3.4E-08 7.3E-13 102.2 23.9 239 174-479 199-478 (508)
65 KOG1129 TPR repeat-containing 99.0 7.6E-09 1.7E-13 96.6 15.7 225 286-515 227-459 (478)
66 KOG0547 Translocase of outer m 99.0 1.4E-06 3E-11 86.3 32.0 210 264-481 344-567 (606)
67 KOG1174 Anaphase-promoting com 99.0 9.6E-07 2.1E-11 85.5 30.0 267 203-487 230-507 (564)
68 PRK11189 lipoprotein NlpI; Pro 99.0 5E-08 1.1E-12 96.8 21.2 211 296-515 40-266 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-07 5.9E-12 91.6 26.1 219 262-488 42-273 (296)
70 PRK12370 invasion protein regu 99.0 1E-07 2.2E-12 103.4 24.7 178 155-343 277-467 (553)
71 KOG1173 Anaphase-promoting com 99.0 8.1E-07 1.7E-11 89.6 27.5 274 210-495 249-533 (611)
72 KOG1129 TPR repeat-containing 98.9 4.6E-08 1E-12 91.5 16.0 229 244-484 227-462 (478)
73 KOG2376 Signal recognition par 98.9 6.8E-06 1.5E-10 83.5 32.4 406 77-509 19-515 (652)
74 PF12569 NARP1: NMDA receptor- 98.9 3.6E-06 7.8E-11 88.5 31.3 287 112-412 13-334 (517)
75 PF12569 NARP1: NMDA receptor- 98.9 2.9E-06 6.2E-11 89.2 28.8 286 181-479 11-333 (517)
76 KOG3616 Selective LIM binding 98.8 9.5E-06 2.1E-10 84.0 30.2 192 289-509 739-932 (1636)
77 KOG1156 N-terminal acetyltrans 98.8 2E-05 4.4E-10 81.0 32.4 361 141-516 77-470 (700)
78 KOG3785 Uncharacterized conser 98.8 5.2E-06 1.1E-10 78.9 25.7 403 87-515 37-491 (557)
79 COG3063 PilF Tfp pilus assembl 98.8 4.1E-07 8.9E-12 81.6 17.5 161 351-516 38-204 (250)
80 KOG3785 Uncharacterized conser 98.8 2.6E-05 5.7E-10 74.2 30.2 380 79-483 66-493 (557)
81 KOG1174 Anaphase-promoting com 98.8 1.6E-05 3.5E-10 77.3 28.8 243 264-513 214-466 (564)
82 KOG1125 TPR repeat-containing 98.8 1.3E-07 2.8E-12 95.6 15.2 219 292-513 295-526 (579)
83 KOG4162 Predicted calmodulin-b 98.7 2.7E-05 5.9E-10 81.7 30.6 339 168-515 317-750 (799)
84 KOG2047 mRNA splicing factor [ 98.7 0.00013 2.8E-09 75.1 33.8 354 104-508 103-534 (835)
85 PF04733 Coatomer_E: Coatomer 98.7 4.4E-07 9.6E-12 88.8 16.1 156 322-484 107-269 (290)
86 COG3063 PilF Tfp pilus assembl 98.7 5.2E-06 1.1E-10 74.7 21.1 198 284-485 37-241 (250)
87 KOG0548 Molecular co-chaperone 98.7 2.7E-06 5.8E-11 85.6 21.4 384 111-515 10-456 (539)
88 KOG0985 Vesicle coat protein c 98.7 3.3E-05 7.1E-10 83.0 30.2 209 281-510 983-1245(1666)
89 KOG1156 N-terminal acetyltrans 98.7 9.5E-05 2.1E-09 76.3 32.5 69 448-516 366-436 (700)
90 KOG1127 TPR repeat-containing 98.7 2E-05 4.3E-10 84.7 28.6 447 55-511 476-993 (1238)
91 KOG3617 WD40 and TPR repeat-co 98.7 5E-05 1.1E-09 79.9 30.4 376 68-509 724-1169(1416)
92 KOG0985 Vesicle coat protein c 98.7 0.00016 3.5E-09 77.9 34.1 278 187-506 1088-1375(1666)
93 KOG0624 dsRNA-activated protei 98.7 5.4E-05 1.2E-09 71.9 26.9 189 291-485 164-375 (504)
94 cd05804 StaR_like StaR_like; a 98.6 6.1E-05 1.3E-09 77.5 30.5 194 174-375 6-213 (355)
95 cd05804 StaR_like StaR_like; a 98.6 7.9E-05 1.7E-09 76.6 30.2 301 206-515 7-337 (355)
96 KOG4340 Uncharacterized conser 98.6 9E-05 1.9E-09 69.1 26.3 403 75-513 15-442 (459)
97 PRK04841 transcriptional regul 98.6 0.00031 6.8E-09 82.1 38.2 414 45-483 285-763 (903)
98 KOG1070 rRNA processing protei 98.6 4.7E-06 1E-10 92.2 19.9 201 314-518 1455-1667(1710)
99 PF04733 Coatomer_E: Coatomer 98.6 1.8E-06 3.8E-11 84.6 15.3 219 282-514 35-265 (290)
100 PRK04841 transcriptional regul 98.6 0.00023 5E-09 83.2 35.3 326 183-515 383-761 (903)
101 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.3E-12 58.6 4.4 33 169-201 2-34 (34)
102 KOG3616 Selective LIM binding 98.5 0.00024 5.2E-09 74.0 28.9 262 213-514 740-1024(1636)
103 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.6E-12 57.9 4.3 33 312-344 2-34 (34)
104 KOG4340 Uncharacterized conser 98.5 4.2E-05 9.2E-10 71.2 20.9 302 177-510 13-335 (459)
105 TIGR03302 OM_YfiO outer membra 98.5 1.1E-05 2.4E-10 77.5 18.3 182 315-514 31-232 (235)
106 PLN02789 farnesyltranstransfer 98.4 7.1E-05 1.5E-09 74.3 22.9 218 290-511 45-299 (320)
107 PRK15359 type III secretion sy 98.4 7.3E-06 1.6E-10 71.6 13.1 121 369-496 14-137 (144)
108 KOG1128 Uncharacterized conser 98.4 0.00011 2.3E-09 77.0 23.2 237 170-429 394-633 (777)
109 PRK10370 formate-dependent nit 98.4 2.1E-05 4.5E-10 72.7 16.4 146 356-515 24-174 (198)
110 KOG2376 Signal recognition par 98.4 0.0047 1E-07 63.5 34.5 381 77-477 84-517 (652)
111 KOG0624 dsRNA-activated protei 98.4 0.0012 2.6E-08 63.1 27.5 300 110-445 45-367 (504)
112 KOG0548 Molecular co-chaperone 98.3 0.001 2.3E-08 67.5 28.5 390 81-497 13-472 (539)
113 KOG1070 rRNA processing protei 98.3 0.0001 2.2E-09 82.2 22.7 227 279-509 1454-1695(1710)
114 PRK15359 type III secretion sy 98.3 9.8E-06 2.1E-10 70.8 11.4 107 404-515 14-122 (144)
115 PRK15179 Vi polysaccharide bio 98.3 5E-05 1.1E-09 83.1 19.3 192 281-490 27-227 (694)
116 KOG2053 Mitochondrial inherita 98.3 0.012 2.5E-07 63.7 36.8 67 453-519 438-507 (932)
117 KOG1128 Uncharacterized conser 98.2 4.4E-05 9.6E-10 79.7 16.6 188 313-515 394-583 (777)
118 KOG1127 TPR repeat-containing 98.2 0.00023 4.9E-09 76.9 21.8 353 141-510 494-909 (1238)
119 TIGR03302 OM_YfiO outer membra 98.2 0.0001 2.2E-09 70.8 18.0 182 279-482 30-234 (235)
120 PRK15363 pathogenicity island 98.2 3.7E-05 8.1E-10 66.0 12.2 119 419-560 35-155 (157)
121 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 6.8E-11 53.5 4.3 35 206-240 1-35 (35)
122 KOG1125 TPR repeat-containing 98.1 0.00011 2.4E-09 74.9 17.0 245 249-505 294-562 (579)
123 PRK14720 transcript cleavage f 98.1 0.00036 7.8E-09 77.3 22.3 166 173-377 30-198 (906)
124 KOG3081 Vesicle coat complex C 98.1 0.0018 4E-08 59.9 23.1 134 304-444 95-232 (299)
125 KOG3617 WD40 and TPR repeat-co 98.1 0.013 2.9E-07 62.4 31.9 204 68-308 755-993 (1416)
126 PRK10370 formate-dependent nit 98.1 0.00021 4.6E-09 66.0 17.4 154 324-489 23-182 (198)
127 COG5010 TadD Flp pilus assembl 98.1 7.2E-05 1.6E-09 69.0 13.8 127 387-515 70-198 (257)
128 COG5010 TadD Flp pilus assembl 98.1 0.00034 7.5E-09 64.6 17.7 151 322-476 71-227 (257)
129 PLN02789 farnesyltranstransfer 98.1 0.0018 4E-08 64.4 24.5 212 264-482 55-304 (320)
130 PRK15179 Vi polysaccharide bio 98.1 0.0008 1.7E-08 73.9 23.2 162 292-458 59-229 (694)
131 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 51.7 4.5 35 349-383 1-35 (35)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00016 3.6E-09 73.2 16.2 124 385-513 171-296 (395)
133 PF04840 Vps16_C: Vps16, C-ter 98.0 0.018 3.9E-07 57.2 29.6 123 319-461 179-301 (319)
134 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 50.5 4.5 34 205-238 1-34 (34)
135 KOG1914 mRNA cleavage and poly 98.0 0.021 4.5E-07 58.3 29.3 77 101-182 18-94 (656)
136 TIGR02552 LcrH_SycD type III s 98.0 6.5E-05 1.4E-09 65.0 10.9 95 420-514 18-114 (135)
137 COG4783 Putative Zn-dependent 98.0 0.00059 1.3E-08 68.6 18.3 108 358-470 316-427 (484)
138 COG4783 Putative Zn-dependent 97.9 0.0016 3.5E-08 65.5 19.9 116 393-511 316-434 (484)
139 PF13812 PPR_3: Pentatricopept 97.9 2.6E-05 5.6E-10 48.8 4.5 33 349-381 2-34 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0004 8.7E-09 70.5 15.3 126 320-449 172-298 (395)
141 PRK14720 transcript cleavage f 97.8 0.0034 7.3E-08 69.9 22.8 282 134-485 25-311 (906)
142 KOG3060 Uncharacterized conser 97.8 0.0031 6.8E-08 58.0 18.7 168 321-491 56-231 (289)
143 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.9E-10 47.5 3.5 31 206-236 1-31 (31)
144 TIGR02552 LcrH_SycD type III s 97.8 0.00051 1.1E-08 59.3 12.9 113 370-486 5-120 (135)
145 cd00189 TPR Tetratricopeptide 97.7 0.0003 6.4E-09 55.9 9.9 93 421-513 2-96 (100)
146 PF12895 Apc3: Anaphase-promot 97.7 5.2E-05 1.1E-09 59.3 4.3 78 432-510 2-83 (84)
147 KOG3081 Vesicle coat complex C 97.7 0.006 1.3E-07 56.6 17.7 141 355-505 115-261 (299)
148 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.8E-09 54.5 5.9 64 450-513 2-66 (69)
149 PF09976 TPR_21: Tetratricopep 97.6 0.0027 5.8E-08 55.6 14.9 115 361-476 24-143 (145)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0013 2.9E-08 57.5 12.9 125 385-511 14-144 (145)
151 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 45.5 3.4 31 349-379 1-31 (31)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 55.9 11.4 99 388-486 7-111 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00081 1.7E-08 56.5 10.8 96 420-515 3-106 (119)
154 KOG1914 mRNA cleavage and poly 97.5 0.14 3.1E-06 52.5 35.7 436 67-511 17-536 (656)
155 PF13432 TPR_16: Tetratricopep 97.5 0.00032 6.9E-09 51.7 5.9 58 457-514 3-60 (65)
156 PRK02603 photosystem I assembl 97.4 0.0016 3.4E-08 59.0 10.7 82 419-500 35-121 (172)
157 PRK10153 DNA-binding transcrip 97.4 0.007 1.5E-07 64.5 17.0 139 345-485 334-487 (517)
158 PLN03088 SGT1, suppressor of 97.4 0.0012 2.6E-08 67.3 10.6 107 389-498 8-117 (356)
159 PF08579 RPM2: Mitochondrial r 97.4 0.0026 5.5E-08 50.9 9.8 85 209-294 29-116 (120)
160 CHL00033 ycf3 photosystem I as 97.4 0.0017 3.6E-08 58.6 10.3 93 419-511 35-139 (168)
161 PF07079 DUF1347: Protein of u 97.3 0.22 4.8E-06 50.1 34.6 431 55-512 26-522 (549)
162 KOG0553 TPR repeat-containing 97.3 0.002 4.4E-08 60.9 10.6 101 393-496 91-194 (304)
163 KOG3060 Uncharacterized conser 97.3 0.021 4.6E-07 52.7 16.7 160 351-514 55-220 (289)
164 PRK02603 photosystem I assembl 97.3 0.0062 1.4E-07 55.1 13.6 131 347-501 34-167 (172)
165 PLN03088 SGT1, suppressor of 97.3 0.0029 6.3E-08 64.5 12.5 104 354-461 8-113 (356)
166 cd00189 TPR Tetratricopeptide 97.3 0.0028 6E-08 50.1 9.7 61 422-482 37-99 (100)
167 PF05843 Suf: Suppressor of fo 97.2 0.0097 2.1E-07 58.4 14.4 133 349-484 2-140 (280)
168 COG4700 Uncharacterized protei 97.2 0.047 1E-06 47.9 16.5 133 379-513 85-221 (251)
169 KOG2053 Mitochondrial inherita 97.2 0.55 1.2E-05 51.4 38.0 214 87-312 24-256 (932)
170 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.8E-08 48.3 6.1 61 425-485 3-65 (65)
171 PF14559 TPR_19: Tetratricopep 97.1 0.00061 1.3E-08 50.6 4.3 53 462-514 2-54 (68)
172 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.9E-08 49.6 6.1 57 459-515 3-59 (73)
173 PF12895 Apc3: Anaphase-promot 97.1 0.0011 2.3E-08 51.8 5.4 80 361-444 2-83 (84)
174 KOG0553 TPR repeat-containing 97.1 0.0016 3.5E-08 61.5 7.4 87 427-513 89-177 (304)
175 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.4 8.6E-06 48.3 26.0 82 136-218 39-122 (660)
176 PF06239 ECSIT: Evolutionarily 97.1 0.0055 1.2E-07 55.5 10.1 59 194-252 34-99 (228)
177 KOG0550 Molecular chaperone (D 97.1 0.015 3.2E-07 57.4 13.6 243 264-515 67-351 (486)
178 PF10037 MRP-S27: Mitochondria 97.0 0.0065 1.4E-07 62.1 11.4 116 173-295 65-186 (429)
179 PF05843 Suf: Suppressor of fo 96.9 0.011 2.3E-07 58.2 12.1 140 104-248 2-148 (280)
180 CHL00033 ycf3 photosystem I as 96.9 0.041 8.9E-07 49.5 15.0 80 348-430 35-117 (168)
181 KOG2280 Vacuolar assembly/sort 96.9 0.79 1.7E-05 49.3 25.4 303 106-443 440-794 (829)
182 COG4235 Cytochrome c biogenesi 96.9 0.0064 1.4E-07 57.9 9.6 102 416-517 153-259 (287)
183 PF13431 TPR_17: Tetratricopep 96.9 0.00063 1.4E-08 42.2 1.9 33 474-506 2-34 (34)
184 PF04840 Vps16_C: Vps16, C-ter 96.9 0.56 1.2E-05 46.7 25.6 109 384-509 178-286 (319)
185 PRK15331 chaperone protein Sic 96.9 0.007 1.5E-07 52.5 8.8 87 427-513 45-133 (165)
186 KOG1538 Uncharacterized conser 96.9 0.11 2.3E-06 54.4 18.4 78 360-451 728-806 (1081)
187 PF14938 SNAP: Soluble NSF att 96.9 0.074 1.6E-06 52.4 17.4 171 287-484 40-229 (282)
188 PF10037 MRP-S27: Mitochondria 96.9 0.022 4.8E-07 58.3 13.8 119 278-396 62-186 (429)
189 PF08579 RPM2: Mitochondrial r 96.9 0.0094 2E-07 47.8 8.6 79 107-186 29-116 (120)
190 PF14559 TPR_19: Tetratricopep 96.9 0.0018 3.9E-08 48.0 4.6 55 431-485 3-59 (68)
191 KOG1538 Uncharacterized conser 96.8 0.25 5.5E-06 51.7 21.0 98 331-442 730-827 (1081)
192 PF13414 TPR_11: TPR repeat; P 96.8 0.0025 5.3E-08 47.5 5.1 64 419-482 3-69 (69)
193 KOG1130 Predicted G-alpha GTPa 96.8 0.16 3.5E-06 50.3 17.9 59 350-408 237-300 (639)
194 KOG2041 WD40 repeat protein [G 96.7 0.58 1.3E-05 49.6 22.7 57 421-477 1023-1083(1189)
195 KOG2796 Uncharacterized conser 96.7 0.06 1.3E-06 50.0 13.5 184 55-247 125-326 (366)
196 PRK10803 tol-pal system protei 96.7 0.015 3.2E-07 56.1 10.3 92 422-513 146-245 (263)
197 KOG2041 WD40 repeat protein [G 96.6 1.2 2.7E-05 47.3 26.4 246 88-376 679-951 (1189)
198 PF12688 TPR_5: Tetratrico pep 96.6 0.031 6.6E-07 46.5 10.6 84 427-510 9-100 (120)
199 PF13281 DUF4071: Domain of un 96.6 0.3 6.4E-06 49.2 19.4 163 320-485 144-339 (374)
200 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0081 1.8E-07 60.9 8.4 62 419-480 75-141 (453)
201 PRK15363 pathogenicity island 96.6 0.094 2E-06 45.4 13.7 19 459-477 111-129 (157)
202 PF14938 SNAP: Soluble NSF att 96.6 0.33 7.2E-06 47.8 19.8 156 176-350 96-270 (282)
203 PRK10153 DNA-binding transcrip 96.6 0.11 2.4E-06 55.6 17.1 69 382-453 419-488 (517)
204 PF06239 ECSIT: Evolutionarily 96.5 0.018 3.9E-07 52.2 9.2 96 338-434 35-153 (228)
205 COG4700 Uncharacterized protei 96.5 0.11 2.4E-06 45.7 13.6 130 278-409 85-219 (251)
206 KOG1130 Predicted G-alpha GTPa 96.5 0.018 3.8E-07 56.7 9.7 257 249-513 26-343 (639)
207 KOG2280 Vacuolar assembly/sort 96.5 1.7 3.7E-05 46.9 30.0 338 131-508 424-793 (829)
208 PF13428 TPR_14: Tetratricopep 96.5 0.0057 1.2E-07 40.7 4.4 42 452-493 2-43 (44)
209 PF03704 BTAD: Bacterial trans 96.5 0.048 1E-06 47.7 11.6 124 383-520 3-136 (146)
210 KOG0550 Molecular chaperone (D 96.4 1.2 2.5E-05 44.6 21.1 264 149-445 59-347 (486)
211 PF12688 TPR_5: Tetratrico pep 96.3 0.071 1.5E-06 44.4 11.2 88 354-444 7-100 (120)
212 PF09205 DUF1955: Domain of un 96.3 0.35 7.6E-06 40.1 14.5 141 358-517 12-152 (161)
213 PRK10866 outer membrane biogen 96.3 0.93 2E-05 43.4 20.0 55 355-409 182-238 (243)
214 PRK10866 outer membrane biogen 96.2 0.26 5.6E-06 47.2 16.1 172 323-513 38-240 (243)
215 PF13371 TPR_9: Tetratricopept 96.1 0.023 5E-07 42.7 6.7 63 427-489 3-67 (73)
216 KOG2796 Uncharacterized conser 96.1 0.36 7.7E-06 45.1 14.9 134 350-484 179-319 (366)
217 COG3898 Uncharacterized membra 95.9 2.1 4.5E-05 42.6 28.1 288 105-410 84-390 (531)
218 PRK10803 tol-pal system protei 95.9 0.091 2E-06 50.7 11.3 98 385-485 145-251 (263)
219 KOG0543 FKBP-type peptidyl-pro 95.8 0.071 1.5E-06 53.0 10.2 64 451-514 257-320 (397)
220 PF13424 TPR_12: Tetratricopep 95.7 0.016 3.5E-07 44.3 4.3 61 452-512 6-73 (78)
221 KOG1258 mRNA processing protei 95.7 3.5 7.6E-05 43.5 29.6 184 315-501 295-491 (577)
222 PF13424 TPR_12: Tetratricopep 95.7 0.016 3.5E-07 44.2 4.2 60 421-480 7-75 (78)
223 PF12921 ATP13: Mitochondrial 95.5 0.11 2.5E-06 43.6 9.1 95 317-427 2-96 (126)
224 COG4235 Cytochrome c biogenesi 95.5 0.15 3.2E-06 48.9 10.5 108 138-248 155-268 (287)
225 KOG1585 Protein required for f 95.4 1.9 4.2E-05 40.0 16.9 205 278-509 23-251 (308)
226 COG3898 Uncharacterized membra 95.4 3.3 7.1E-05 41.3 27.3 237 264-513 138-391 (531)
227 PF12921 ATP13: Mitochondrial 95.4 0.15 3.2E-06 43.0 9.2 78 382-459 1-96 (126)
228 PF13525 YfiO: Outer membrane 95.2 0.68 1.5E-05 43.0 14.1 50 457-506 147-199 (203)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.11 2.4E-06 52.9 9.1 61 382-445 74-138 (453)
230 KOG1941 Acetylcholine receptor 95.1 0.61 1.3E-05 45.6 13.4 193 318-510 44-271 (518)
231 COG0457 NrfG FOG: TPR repeat [ 94.9 3.1 6.8E-05 38.7 26.1 216 295-514 36-265 (291)
232 KOG4555 TPR repeat-containing 94.9 0.27 5.8E-06 40.6 8.9 89 428-516 52-146 (175)
233 PF13281 DUF4071: Domain of un 94.8 3.9 8.4E-05 41.4 18.9 96 179-274 146-254 (374)
234 KOG3941 Intermediate in Toll s 94.8 0.17 3.6E-06 47.7 8.6 63 192-254 52-121 (406)
235 PF13525 YfiO: Outer membrane 94.7 1.3 2.7E-05 41.2 14.5 48 390-437 148-196 (203)
236 KOG1920 IkappaB kinase complex 94.6 6 0.00013 45.3 21.2 25 209-233 794-820 (1265)
237 PF07035 Mic1: Colon cancer-as 94.5 3.2 6.9E-05 36.7 15.4 120 225-363 14-135 (167)
238 PF07079 DUF1347: Protein of u 94.5 6.6 0.00014 40.1 26.8 369 82-477 91-521 (549)
239 smart00299 CLH Clathrin heavy 94.3 3 6.4E-05 35.9 15.0 43 287-330 12-54 (140)
240 COG1729 Uncharacterized protei 94.1 0.33 7.2E-06 46.0 9.1 57 457-513 184-243 (262)
241 PF00515 TPR_1: Tetratricopept 94.0 0.096 2.1E-06 32.3 3.8 32 452-483 2-33 (34)
242 PF03704 BTAD: Bacterial trans 94.0 0.13 2.9E-06 44.9 6.1 68 176-243 64-139 (146)
243 KOG0543 FKBP-type peptidyl-pro 94.0 0.47 1E-05 47.4 10.3 138 355-514 215-355 (397)
244 KOG3941 Intermediate in Toll s 94.0 0.36 7.8E-06 45.5 8.8 100 335-435 52-174 (406)
245 COG3118 Thioredoxin domain-con 93.9 5.2 0.00011 38.6 16.5 144 356-501 142-288 (304)
246 PF07719 TPR_2: Tetratricopept 93.9 0.15 3.2E-06 31.3 4.5 33 452-484 2-34 (34)
247 PF04053 Coatomer_WDAD: Coatom 93.4 1.1 2.4E-05 46.9 12.4 130 359-515 272-403 (443)
248 PF10300 DUF3808: Protein of u 93.4 3.8 8.2E-05 43.6 16.6 159 243-410 191-374 (468)
249 PF13512 TPR_18: Tetratricopep 93.4 1.6 3.4E-05 37.3 10.9 58 429-486 20-82 (142)
250 smart00299 CLH Clathrin heavy 93.3 4.9 0.00011 34.6 15.9 41 354-395 13-53 (140)
251 PRK11906 transcriptional regul 93.3 2.7 5.9E-05 43.2 14.4 142 364-508 274-430 (458)
252 PF04053 Coatomer_WDAD: Coatom 93.3 2.8 6E-05 44.0 15.0 157 111-305 269-425 (443)
253 PRK11906 transcriptional regul 93.2 1.1 2.5E-05 45.9 11.7 116 398-513 273-400 (458)
254 COG3118 Thioredoxin domain-con 93.2 2.2 4.7E-05 41.0 12.7 122 391-515 142-266 (304)
255 KOG2610 Uncharacterized conser 92.7 3.4 7.4E-05 40.2 13.3 112 331-445 117-235 (491)
256 PF09205 DUF1955: Domain of un 92.4 5.7 0.00012 33.2 13.4 116 293-412 13-149 (161)
257 PF13512 TPR_18: Tetratricopep 92.2 3.9 8.4E-05 35.0 11.7 113 356-485 18-133 (142)
258 PF04184 ST7: ST7 protein; In 92.0 2.7 5.9E-05 43.4 12.4 148 361-520 181-330 (539)
259 PF10300 DUF3808: Protein of u 91.9 5.1 0.00011 42.6 15.2 115 396-513 246-375 (468)
260 COG1729 Uncharacterized protei 91.9 1.4 3.1E-05 41.8 9.8 100 386-486 145-250 (262)
261 COG5107 RNA14 Pre-mRNA 3'-end 91.8 5.1 0.00011 40.7 13.8 144 103-251 397-546 (660)
262 KOG1585 Protein required for f 91.7 11 0.00025 35.1 15.4 23 320-342 193-215 (308)
263 KOG2610 Uncharacterized conser 91.4 1.7 3.7E-05 42.2 9.6 159 360-521 115-283 (491)
264 COG0457 NrfG FOG: TPR repeat [ 91.0 13 0.00027 34.4 27.8 215 264-483 41-268 (291)
265 PF04184 ST7: ST7 protein; In 90.9 9.9 0.00021 39.5 15.1 98 387-484 263-379 (539)
266 PF13170 DUF4003: Protein of u 90.8 18 0.00039 35.7 17.3 127 298-427 78-225 (297)
267 KOG4555 TPR repeat-containing 90.7 1.4 3.1E-05 36.5 7.3 88 393-483 53-147 (175)
268 KOG4234 TPR repeat-containing 90.2 0.95 2.1E-05 40.6 6.4 88 428-515 104-198 (271)
269 COG4105 ComL DNA uptake lipopr 90.2 17 0.00037 34.4 19.7 58 457-514 173-233 (254)
270 PRK15331 chaperone protein Sic 90.2 7.1 0.00015 34.3 11.6 83 360-445 49-131 (165)
271 PF13181 TPR_8: Tetratricopept 90.1 0.53 1.1E-05 28.8 3.6 31 453-483 3-33 (34)
272 PF08631 SPO22: Meiosis protei 90.0 20 0.00044 35.1 22.6 59 176-234 86-150 (278)
273 KOG1586 Protein required for f 90.0 10 0.00022 35.3 12.7 53 433-485 128-188 (288)
274 PF13176 TPR_7: Tetratricopept 89.7 0.57 1.2E-05 29.3 3.5 26 487-512 1-26 (36)
275 PF13170 DUF4003: Protein of u 89.6 16 0.00035 36.0 15.3 48 155-202 78-131 (297)
276 KOG2114 Vacuolar assembly/sort 89.2 17 0.00037 40.1 15.8 179 284-477 336-516 (933)
277 COG4785 NlpI Lipoprotein NlpI, 89.1 18 0.00039 33.2 13.6 162 348-516 99-268 (297)
278 COG3629 DnrI DNA-binding trans 88.8 2 4.4E-05 41.4 8.1 62 452-513 154-215 (280)
279 PF13176 TPR_7: Tetratricopept 88.7 0.74 1.6E-05 28.8 3.5 28 453-480 1-28 (36)
280 COG3629 DnrI DNA-binding trans 88.6 2.6 5.6E-05 40.7 8.6 76 174-249 153-236 (280)
281 PF08631 SPO22: Meiosis protei 88.5 26 0.00057 34.3 26.2 98 284-383 86-192 (278)
282 KOG1920 IkappaB kinase complex 88.5 55 0.0012 38.0 21.5 30 171-201 788-819 (1265)
283 COG4649 Uncharacterized protei 88.5 7 0.00015 34.4 10.2 51 429-479 142-195 (221)
284 PF09613 HrpB1_HrpK: Bacterial 88.3 14 0.0003 32.4 12.0 88 392-482 19-108 (160)
285 KOG2066 Vacuolar assembly/sort 88.2 46 0.001 36.7 23.0 166 150-347 367-535 (846)
286 KOG2066 Vacuolar assembly/sort 87.9 48 0.001 36.6 24.9 69 386-466 637-705 (846)
287 KOG2396 HAT (Half-A-TPR) repea 87.2 41 0.00089 35.1 26.5 96 380-478 456-557 (568)
288 PF02259 FAT: FAT domain; Int 86.6 21 0.00046 36.2 15.0 67 450-516 145-215 (352)
289 COG2976 Uncharacterized protei 86.0 26 0.00057 31.7 13.0 113 366-483 70-191 (207)
290 PF10602 RPN7: 26S proteasome 85.6 10 0.00022 34.2 10.5 94 318-411 37-141 (177)
291 KOG4648 Uncharacterized conser 85.3 1.8 3.8E-05 42.2 5.5 111 390-507 104-217 (536)
292 PF09613 HrpB1_HrpK: Bacterial 85.2 3.6 7.8E-05 35.9 6.8 51 463-513 22-72 (160)
293 PF02259 FAT: FAT domain; Int 85.0 47 0.001 33.7 22.6 149 346-497 144-304 (352)
294 PF13428 TPR_14: Tetratricopep 84.6 3.5 7.7E-05 27.0 5.3 28 284-311 3-30 (44)
295 PF13431 TPR_17: Tetratricopep 84.0 2 4.2E-05 26.5 3.5 31 163-194 3-33 (34)
296 PF00515 TPR_1: Tetratricopept 83.8 2.4 5.2E-05 25.8 4.0 27 350-376 3-29 (34)
297 COG4649 Uncharacterized protei 83.6 31 0.00067 30.6 12.3 122 216-344 69-194 (221)
298 TIGR02561 HrpB1_HrpK type III 83.2 4.5 9.8E-05 34.7 6.4 52 464-515 23-74 (153)
299 PF04097 Nic96: Nup93/Nic96; 82.5 85 0.0018 34.8 22.7 30 420-449 501-535 (613)
300 KOG4279 Serine/threonine prote 82.3 28 0.0006 38.1 13.0 200 264-491 181-406 (1226)
301 PF10602 RPN7: 26S proteasome 82.0 25 0.00055 31.6 11.4 95 349-445 37-139 (177)
302 KOG0890 Protein kinase of the 81.9 1.6E+02 0.0034 37.4 24.0 310 179-516 1388-1733(2382)
303 PF07035 Mic1: Colon cancer-as 81.9 37 0.00079 30.2 15.4 123 99-233 25-148 (167)
304 KOG1941 Acetylcholine receptor 81.7 15 0.00032 36.5 10.0 162 349-512 44-233 (518)
305 TIGR02561 HrpB1_HrpK type III 81.6 34 0.00073 29.5 11.2 64 152-217 23-88 (153)
306 KOG4648 Uncharacterized conser 81.6 5.1 0.00011 39.1 6.9 86 355-451 104-198 (536)
307 PRK09687 putative lyase; Provi 81.5 56 0.0012 32.0 27.3 60 172-231 35-98 (280)
308 PF00637 Clathrin: Region in C 81.3 0.79 1.7E-05 39.7 1.4 86 144-232 12-97 (143)
309 KOG4570 Uncharacterized conser 81.1 6.2 0.00014 38.2 7.2 101 64-169 58-165 (418)
310 PRK15180 Vi polysaccharide bio 80.5 10 0.00022 38.9 8.8 108 371-483 313-423 (831)
311 COG4105 ComL DNA uptake lipopr 80.2 55 0.0012 31.1 18.2 61 425-485 173-238 (254)
312 smart00028 TPR Tetratricopepti 80.1 3.8 8.2E-05 23.6 4.0 30 453-482 3-32 (34)
313 KOG4570 Uncharacterized conser 80.0 14 0.0003 36.0 9.0 98 311-412 58-164 (418)
314 PRK11619 lytic murein transgly 79.4 1.1E+02 0.0024 34.1 29.4 266 176-479 101-374 (644)
315 PF11207 DUF2989: Protein of u 78.5 21 0.00045 32.6 9.4 81 248-337 115-198 (203)
316 PF02284 COX5A: Cytochrome c o 78.4 15 0.00032 29.2 7.3 60 366-427 28-87 (108)
317 PF13174 TPR_6: Tetratricopept 78.4 3.8 8.3E-05 24.4 3.5 27 457-483 6-32 (33)
318 TIGR02508 type_III_yscG type I 78.1 29 0.00062 27.6 8.6 79 154-235 20-98 (115)
319 PF07719 TPR_2: Tetratricopept 78.0 5 0.00011 24.2 4.0 27 350-376 3-29 (34)
320 PF07721 TPR_4: Tetratricopept 77.1 3 6.6E-05 23.7 2.5 23 487-509 3-25 (26)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 76.9 13 0.00027 29.3 6.4 63 363-427 22-84 (103)
322 PF14853 Fis1_TPR_C: Fis1 C-te 76.7 6.3 0.00014 27.2 4.4 32 456-487 6-37 (53)
323 TIGR02508 type_III_yscG type I 76.6 36 0.00078 27.0 9.7 87 298-388 21-107 (115)
324 PF13374 TPR_10: Tetratricopep 76.5 5.4 0.00012 25.4 4.0 27 453-479 4-30 (42)
325 PF00637 Clathrin: Region in C 76.2 1 2.2E-05 39.0 0.6 54 288-341 13-66 (143)
326 PF04097 Nic96: Nup93/Nic96; 75.8 1.4E+02 0.0029 33.2 22.1 85 427-512 422-532 (613)
327 PF13374 TPR_10: Tetratricopep 75.6 6 0.00013 25.1 4.1 28 206-233 3-30 (42)
328 KOG0276 Vesicle coat complex C 75.3 54 0.0012 35.1 12.4 150 329-511 598-747 (794)
329 KOG0276 Vesicle coat complex C 75.2 37 0.0008 36.3 11.2 63 183-256 646-708 (794)
330 KOG1464 COP9 signalosome, subu 75.1 55 0.0012 31.2 11.3 162 351-512 68-259 (440)
331 PF10345 Cohesin_load: Cohesin 74.9 1.4E+02 0.0031 33.1 34.3 185 329-513 373-605 (608)
332 COG3947 Response regulator con 74.8 11 0.00023 36.2 6.8 60 454-513 282-341 (361)
333 PF13174 TPR_6: Tetratricopept 74.6 3.2 6.8E-05 24.8 2.4 28 487-514 2-29 (33)
334 PRK09687 putative lyase; Provi 74.1 92 0.002 30.5 27.1 136 239-393 141-277 (280)
335 PRK10941 hypothetical protein; 73.3 15 0.00033 35.6 7.7 62 453-514 183-244 (269)
336 KOG1586 Protein required for f 72.9 84 0.0018 29.5 14.1 90 397-486 128-230 (288)
337 PF13181 TPR_8: Tetratricopept 72.9 6.9 0.00015 23.6 3.6 28 486-513 2-29 (34)
338 PRK15180 Vi polysaccharide bio 72.4 49 0.0011 34.2 11.1 138 394-536 300-440 (831)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 72.3 26 0.00056 27.6 7.1 59 121-181 25-83 (103)
340 PF07721 TPR_4: Tetratricopept 71.4 7.4 0.00016 22.1 3.2 20 424-443 6-25 (26)
341 PF06552 TOM20_plant: Plant sp 71.3 34 0.00074 30.6 8.6 45 467-518 96-140 (186)
342 PF14853 Fis1_TPR_C: Fis1 C-te 70.2 27 0.00059 24.1 6.3 28 487-514 3-30 (53)
343 KOG0890 Protein kinase of the 69.8 3.2E+02 0.007 34.9 23.0 310 144-481 1388-1732(2382)
344 KOG1550 Extracellular protein 68.5 1.9E+02 0.004 31.7 21.0 210 297-513 308-537 (552)
345 COG3947 Response regulator con 67.5 1.3E+02 0.0027 29.4 12.5 56 320-375 282-340 (361)
346 PF11207 DUF2989: Protein of u 67.0 60 0.0013 29.7 9.5 42 152-193 153-197 (203)
347 KOG4642 Chaperone-dependent E3 65.7 16 0.00035 34.1 5.7 80 434-513 25-106 (284)
348 PF10345 Cohesin_load: Cohesin 65.3 2.3E+02 0.0049 31.5 30.3 196 100-309 27-252 (608)
349 PHA02875 ankyrin repeat protei 65.3 1.8E+02 0.0039 30.3 18.4 189 55-256 15-215 (413)
350 COG4455 ImpE Protein of avirul 64.7 22 0.00047 32.8 6.2 65 421-485 3-69 (273)
351 KOG1464 COP9 signalosome, subu 64.2 1.4E+02 0.003 28.6 19.2 144 321-472 149-324 (440)
352 KOG4507 Uncharacterized conser 63.7 24 0.00052 37.4 7.1 99 395-496 619-721 (886)
353 KOG0403 Neoplastic transformat 63.7 1.9E+02 0.0041 30.0 15.2 23 209-231 349-371 (645)
354 KOG2297 Predicted translation 63.2 1.6E+02 0.0034 28.9 13.0 75 168-254 160-237 (412)
355 PF06552 TOM20_plant: Plant sp 62.6 10 0.00022 33.8 3.7 46 467-512 51-100 (186)
356 PF13762 MNE1: Mitochondrial s 62.3 52 0.0011 28.4 7.8 94 56-152 23-128 (145)
357 PF13762 MNE1: Mitochondrial s 62.0 1.1E+02 0.0023 26.5 10.2 79 177-255 42-130 (145)
358 PF09477 Type_III_YscG: Bacter 61.9 84 0.0018 25.4 8.2 81 152-235 19-99 (116)
359 PF07163 Pex26: Pex26 protein; 61.4 89 0.0019 30.2 9.8 87 355-444 90-183 (309)
360 PF09986 DUF2225: Uncharacteri 61.2 37 0.00079 31.7 7.5 64 452-515 119-195 (214)
361 KOG0545 Aryl-hydrocarbon recep 60.6 56 0.0012 30.8 8.1 55 459-513 238-292 (329)
362 PF14561 TPR_20: Tetratricopep 60.5 19 0.00041 28.2 4.6 43 472-514 9-51 (90)
363 KOG1258 mRNA processing protei 59.7 2.6E+02 0.0055 30.2 24.7 121 383-505 297-420 (577)
364 PRK13800 putative oxidoreducta 58.2 3.7E+02 0.008 31.6 25.6 256 194-479 624-880 (897)
365 KOG1308 Hsp70-interacting prot 58.1 6 0.00013 38.8 1.7 59 459-517 156-214 (377)
366 COG4455 ImpE Protein of avirul 57.5 40 0.00086 31.2 6.6 54 144-198 6-59 (273)
367 PF09477 Type_III_YscG: Bacter 57.3 1E+02 0.0022 24.9 10.1 86 297-386 21-106 (116)
368 KOG4234 TPR repeat-containing 57.3 81 0.0018 28.8 8.3 59 427-485 142-202 (271)
369 KOG0292 Vesicle coat complex C 57.0 20 0.00042 39.9 5.4 97 361-481 606-702 (1202)
370 TIGR03504 FimV_Cterm FimV C-te 56.7 23 0.00051 23.3 3.8 25 211-235 5-29 (44)
371 COG1747 Uncharacterized N-term 56.5 2.7E+02 0.0059 29.5 22.0 167 315-488 64-242 (711)
372 PF02284 COX5A: Cytochrome c o 56.3 1E+02 0.0022 24.7 9.2 60 264-325 28-87 (108)
373 KOG0376 Serine-threonine phosp 55.9 8.4 0.00018 39.7 2.4 95 390-487 11-108 (476)
374 PF11768 DUF3312: Protein of u 55.9 1.2E+02 0.0026 32.4 10.6 56 321-376 412-472 (545)
375 PF14863 Alkyl_sulf_dimr: Alky 55.3 52 0.0011 28.3 6.8 65 435-502 57-121 (141)
376 KOG0991 Replication factor C, 55.3 1.6E+02 0.0034 27.8 10.0 143 77-246 137-279 (333)
377 PRK11619 lytic murein transgly 55.2 3.4E+02 0.0074 30.3 38.1 246 262-520 257-511 (644)
378 cd08819 CARD_MDA5_2 Caspase ac 55.1 87 0.0019 24.2 7.1 66 158-225 21-86 (88)
379 cd08819 CARD_MDA5_2 Caspase ac 54.7 93 0.002 24.1 7.2 39 329-368 48-86 (88)
380 KOG3364 Membrane protein invol 53.7 72 0.0016 27.1 7.0 48 466-513 50-99 (149)
381 KOG2114 Vacuolar assembly/sort 53.7 3.8E+02 0.0082 30.4 28.4 173 76-273 340-517 (933)
382 smart00386 HAT HAT (Half-A-TPR 53.5 23 0.00049 20.7 3.3 29 465-493 1-29 (33)
383 PF07163 Pex26: Pex26 protein; 52.6 1.1E+02 0.0023 29.6 8.8 86 110-197 90-181 (309)
384 COG5108 RPO41 Mitochondrial DN 51.2 83 0.0018 34.1 8.6 74 179-252 33-115 (1117)
385 PRK13800 putative oxidoreducta 51.2 4.7E+02 0.01 30.7 26.7 125 280-411 754-880 (897)
386 KOG2300 Uncharacterized conser 51.1 3.2E+02 0.007 28.8 24.1 144 359-506 334-506 (629)
387 TIGR03504 FimV_Cterm FimV C-te 51.0 36 0.00078 22.4 4.0 22 355-376 6-27 (44)
388 PF10366 Vps39_1: Vacuolar sor 50.5 92 0.002 25.4 7.2 28 206-233 40-67 (108)
389 PRK12798 chemotaxis protein; R 50.5 3.1E+02 0.0067 28.4 20.0 181 330-513 125-323 (421)
390 PRK09169 hypothetical protein; 50.2 6.8E+02 0.015 32.3 37.6 440 68-511 160-692 (2316)
391 PF04910 Tcf25: Transcriptiona 49.9 3E+02 0.0065 28.1 14.3 120 388-513 15-167 (360)
392 KOG3824 Huntingtin interacting 49.8 41 0.0009 32.6 5.7 55 431-485 128-184 (472)
393 PF10579 Rapsyn_N: Rapsyn N-te 48.4 28 0.0006 26.3 3.5 46 395-440 18-64 (80)
394 PF11846 DUF3366: Domain of un 48.3 46 0.00099 30.4 5.9 35 448-482 141-175 (193)
395 KOG0686 COP9 signalosome, subu 47.5 3.3E+02 0.0072 28.0 13.5 59 176-234 152-216 (466)
396 PF10579 Rapsyn_N: Rapsyn N-te 47.4 60 0.0013 24.6 5.1 47 360-406 18-66 (80)
397 PF10366 Vps39_1: Vacuolar sor 46.9 1.6E+02 0.0034 24.0 8.0 27 350-376 41-67 (108)
398 COG2976 Uncharacterized protei 46.8 2.3E+02 0.005 25.9 15.3 90 289-378 96-189 (207)
399 PF07720 TPR_3: Tetratricopept 46.5 52 0.0011 20.5 4.0 30 454-483 4-35 (36)
400 KOG0687 26S proteasome regulat 46.4 3.1E+02 0.0067 27.3 15.1 139 269-411 57-209 (393)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 45.8 1.1E+02 0.0023 25.8 7.2 42 469-510 81-124 (126)
402 COG2909 MalT ATP-dependent tra 45.0 5.3E+02 0.011 29.5 24.7 251 187-445 393-685 (894)
403 KOG1550 Extracellular protein 44.8 4.6E+02 0.0099 28.7 20.9 277 190-482 228-540 (552)
404 PF11848 DUF3368: Domain of un 44.7 79 0.0017 21.2 5.0 37 213-249 10-46 (48)
405 PF12862 Apc5: Anaphase-promot 44.6 65 0.0014 25.3 5.5 52 462-513 9-69 (94)
406 PF11838 ERAP1_C: ERAP1-like C 44.3 3.3E+02 0.0072 27.0 17.0 111 398-509 145-261 (324)
407 KOG4077 Cytochrome c oxidase, 43.1 1.2E+02 0.0026 25.4 6.6 71 366-447 67-137 (149)
408 KOG3807 Predicted membrane pro 43.0 2E+02 0.0042 28.5 9.1 54 354-409 281-337 (556)
409 PF09670 Cas_Cas02710: CRISPR- 42.6 3.1E+02 0.0068 28.3 11.4 51 360-411 143-197 (379)
410 PF11768 DUF3312: Protein of u 41.9 2.6E+02 0.0057 30.0 10.6 121 178-312 412-537 (545)
411 PF15469 Sec5: Exocyst complex 41.6 2.7E+02 0.0058 25.1 10.3 25 388-412 91-115 (182)
412 PRK10941 hypothetical protein; 41.4 1E+02 0.0022 29.9 7.3 66 422-487 184-251 (269)
413 COG1747 Uncharacterized N-term 41.1 4.7E+02 0.01 27.9 23.2 161 279-445 63-231 (711)
414 KOG4642 Chaperone-dependent E3 39.3 2.4E+02 0.0051 26.8 8.6 78 330-409 23-104 (284)
415 PRK10564 maltose regulon perip 39.2 53 0.0012 32.1 4.8 37 207-243 259-295 (303)
416 PF11846 DUF3366: Domain of un 38.5 93 0.002 28.4 6.4 51 395-445 120-170 (193)
417 PF11663 Toxin_YhaV: Toxin wit 38.2 37 0.00079 28.7 3.1 33 216-250 106-138 (140)
418 COG4976 Predicted methyltransf 38.2 61 0.0013 30.3 4.7 56 429-484 5-62 (287)
419 PF11848 DUF3368: Domain of un 38.2 1.2E+02 0.0027 20.3 5.2 34 358-391 12-45 (48)
420 PHA02875 ankyrin repeat protei 38.2 4.8E+02 0.01 27.1 14.5 64 132-199 23-90 (413)
421 cd00280 TRFH Telomeric Repeat 38.0 1.7E+02 0.0037 26.4 7.3 28 458-486 118-145 (200)
422 KOG2659 LisH motif-containing 37.7 3E+02 0.0064 25.9 9.1 92 350-444 28-128 (228)
423 PF04090 RNA_pol_I_TF: RNA pol 37.4 2.1E+02 0.0046 26.2 8.1 62 452-513 42-104 (199)
424 PF13929 mRNA_stabil: mRNA sta 37.4 4.1E+02 0.0088 26.0 20.5 64 278-341 198-262 (292)
425 PRK13342 recombination factor 37.4 5E+02 0.011 27.1 14.5 46 206-251 228-276 (413)
426 KOG2471 TPR repeat-containing 37.3 5.3E+02 0.011 27.3 14.7 292 131-430 9-380 (696)
427 PF14689 SPOB_a: Sensor_kinase 35.2 59 0.0013 23.3 3.5 30 347-376 22-51 (62)
428 PF12862 Apc5: Anaphase-promot 34.8 1.4E+02 0.003 23.4 5.9 25 457-481 47-71 (94)
429 KOG3636 Uncharacterized conser 34.4 5.5E+02 0.012 26.7 11.4 193 162-360 42-272 (669)
430 cd08326 CARD_CASP9 Caspase act 34.2 1.5E+02 0.0033 22.8 5.7 62 159-224 19-80 (84)
431 PF04190 DUF410: Protein of un 34.0 4.4E+02 0.0096 25.4 14.3 81 418-514 89-170 (260)
432 PF10255 Paf67: RNA polymerase 33.3 1.5E+02 0.0033 30.6 7.3 56 423-478 126-191 (404)
433 PF14689 SPOB_a: Sensor_kinase 33.1 66 0.0014 23.0 3.4 27 207-233 25-51 (62)
434 smart00804 TAP_C C-terminal do 33.1 38 0.00082 24.4 2.1 30 250-283 33-62 (63)
435 PF08225 Antimicrobial19: Pseu 33.0 30 0.00064 18.3 1.1 12 616-627 10-21 (23)
436 PF13934 ELYS: Nuclear pore co 32.9 4.2E+02 0.0092 24.9 13.0 104 351-463 79-184 (226)
437 cd08326 CARD_CASP9 Caspase act 32.6 2.2E+02 0.0049 21.9 6.5 40 328-367 41-80 (84)
438 COG2909 MalT ATP-dependent tra 32.6 8.2E+02 0.018 28.1 22.8 189 329-521 427-654 (894)
439 PRK10564 maltose regulon perip 32.5 86 0.0019 30.7 5.1 41 350-390 259-299 (303)
440 KOG3364 Membrane protein invol 31.9 1E+02 0.0022 26.2 4.7 34 453-486 73-106 (149)
441 PF11838 ERAP1_C: ERAP1-like C 31.7 5.2E+02 0.011 25.6 15.6 166 82-251 50-246 (324)
442 COG4785 NlpI Lipoprotein NlpI, 31.5 4.4E+02 0.0095 24.7 15.5 29 206-234 100-128 (297)
443 PRK13342 recombination factor 31.2 6.3E+02 0.014 26.4 14.7 114 264-395 155-277 (413)
444 PF06957 COPI_C: Coatomer (COP 30.5 1.6E+02 0.0034 30.7 6.9 39 446-484 293-333 (422)
445 COG4941 Predicted RNA polymera 30.1 5.8E+02 0.013 25.6 10.2 22 355-376 372-393 (415)
446 PRK09169 hypothetical protein; 29.9 1.4E+03 0.03 29.9 34.2 397 103-501 122-598 (2316)
447 COG0735 Fur Fe2+/Zn2+ uptake r 29.6 2.5E+02 0.0055 24.2 7.2 65 193-257 8-72 (145)
448 COG4941 Predicted RNA polymera 29.2 6E+02 0.013 25.5 12.0 119 363-485 271-399 (415)
449 PF04190 DUF410: Protein of un 29.2 5.3E+02 0.012 24.9 18.2 83 315-412 88-170 (260)
450 PF10155 DUF2363: Uncharacteri 29.1 3.5E+02 0.0076 22.8 9.6 112 87-201 4-125 (126)
451 KOG4077 Cytochrome c oxidase, 28.7 2.7E+02 0.0059 23.4 6.5 39 444-482 77-115 (149)
452 smart00777 Mad3_BUB1_I Mad3/BU 28.7 3.5E+02 0.0077 22.7 7.7 40 470-509 82-123 (125)
453 COG4976 Predicted methyltransf 28.6 86 0.0019 29.3 4.1 55 461-515 5-59 (287)
454 PF10255 Paf67: RNA polymerase 28.4 2.8E+02 0.006 28.8 8.2 57 319-375 124-191 (404)
455 PF14561 TPR_20: Tetratricopep 28.2 2.9E+02 0.0063 21.5 8.1 62 450-511 21-85 (90)
456 COG5108 RPO41 Mitochondrial DN 28.2 3.1E+02 0.0067 30.1 8.5 24 353-376 33-56 (1117)
457 PF04034 DUF367: Domain of unk 28.1 3.6E+02 0.0079 22.6 7.7 56 421-476 68-124 (127)
458 PF08967 DUF1884: Domain of un 27.9 68 0.0015 24.2 2.7 27 544-570 7-33 (85)
459 KOG0551 Hsp90 co-chaperone CNS 27.9 2.1E+02 0.0045 28.5 6.7 85 425-509 87-177 (390)
460 PRK11639 zinc uptake transcrip 27.3 2.5E+02 0.0054 25.0 6.9 65 193-257 13-77 (169)
461 KOG3824 Huntingtin interacting 26.3 1.1E+02 0.0023 30.0 4.4 55 393-450 126-182 (472)
462 COG2178 Predicted RNA-binding 26.0 5.1E+02 0.011 23.7 8.7 48 329-376 41-97 (204)
463 PF08424 NRDE-2: NRDE-2, neces 25.9 6.8E+02 0.015 25.0 12.7 61 264-327 49-109 (321)
464 TIGR02328 conserved hypothetic 25.7 78 0.0017 25.6 2.9 27 545-571 48-74 (120)
465 KOG4279 Serine/threonine prote 25.7 2E+02 0.0043 32.0 6.7 99 349-450 202-319 (1226)
466 KOG0687 26S proteasome regulat 25.0 7.1E+02 0.015 24.9 11.4 25 386-410 107-131 (393)
467 KOG1524 WD40 repeat-containing 24.7 4.4E+02 0.0095 28.1 8.6 89 418-509 572-668 (737)
468 smart00638 LPD_N Lipoprotein N 24.5 9.6E+02 0.021 26.3 23.3 57 69-129 309-366 (574)
469 cd08332 CARD_CASP2 Caspase act 24.4 3.2E+02 0.007 21.3 6.2 66 158-227 22-87 (90)
470 PRK14958 DNA polymerase III su 24.1 9.3E+02 0.02 26.0 11.9 100 264-384 182-281 (509)
471 KOG0292 Vesicle coat complex C 23.9 7E+02 0.015 28.7 10.4 131 326-480 652-782 (1202)
472 KOG3807 Predicted membrane pro 23.9 1.9E+02 0.0041 28.6 5.6 16 294-309 287-302 (556)
473 COG0790 FOG: TPR repeat, SEL1 23.8 6.8E+02 0.015 24.3 18.1 32 465-499 205-236 (292)
474 KOG4507 Uncharacterized conser 23.3 3.1E+02 0.0068 29.6 7.4 132 380-515 568-706 (886)
475 PF09670 Cas_Cas02710: CRISPR- 23.3 7.3E+02 0.016 25.6 10.4 56 215-275 141-198 (379)
476 PF12926 MOZART2: Mitotic-spin 23.2 3.6E+02 0.0078 20.9 7.7 42 303-344 29-70 (88)
477 COG0735 Fur Fe2+/Zn2+ uptake r 23.0 4.1E+02 0.0089 22.9 7.3 21 391-411 28-48 (145)
478 PRK11639 zinc uptake transcrip 22.6 3.1E+02 0.0067 24.4 6.6 37 153-189 39-75 (169)
479 PF11525 CopK: Copper resistan 22.5 31 0.00067 25.0 0.2 22 631-652 8-29 (73)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 22.4 4.6E+02 0.01 21.9 7.9 42 401-443 81-123 (126)
481 PF11663 Toxin_YhaV: Toxin wit 22.4 58 0.0013 27.5 1.7 34 358-393 105-138 (140)
482 PF12926 MOZART2: Mitotic-spin 22.4 3.8E+02 0.0081 20.8 6.8 42 160-201 29-70 (88)
483 TIGR02710 CRISPR-associated pr 22.2 8.7E+02 0.019 25.0 11.0 24 358-381 140-163 (380)
484 COG2912 Uncharacterized conser 21.6 2.4E+02 0.0052 27.3 5.9 58 457-514 187-244 (269)
485 PHA03100 ankyrin repeat protei 21.6 9.7E+02 0.021 25.3 14.0 226 159-407 48-304 (480)
486 PF11817 Foie-gras_1: Foie gra 21.3 2.4E+02 0.0053 26.9 6.1 17 393-409 188-204 (247)
487 PF07575 Nucleopor_Nup85: Nup8 21.1 1.2E+02 0.0025 33.4 4.3 139 104-247 373-537 (566)
488 COG5191 Uncharacterized conser 20.9 2E+02 0.0043 28.4 5.1 73 418-490 106-181 (435)
489 COG5187 RPN7 26S proteasome re 20.8 3.1E+02 0.0067 26.7 6.3 141 368-512 58-219 (412)
490 KOG2297 Predicted translation 20.4 8.4E+02 0.018 24.2 14.1 21 451-471 321-341 (412)
491 cd07153 Fur_like Ferric uptake 20.3 2.3E+02 0.0049 23.1 5.0 48 210-257 5-52 (116)
492 PF09454 Vps23_core: Vps23 cor 20.2 1.9E+02 0.0042 21.0 3.8 54 198-252 1-54 (65)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-119 Score=1027.18 Aligned_cols=616 Identities=41% Similarity=0.745 Sum_probs=596.9
Q ss_pred cCCCCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchH
Q 035659 30 VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106 (655)
Q Consensus 30 ~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~ 106 (655)
...+..|+..||+++|++|+..+++ +++|..+++.|+.||+.++|+||.+|+++| ++++|+++|++|++||+++|
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC--CHHHHHHHHhcCCCCCcchh
Confidence 3458899999999999999998877 899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 186 (655)
|+||.+|++.|++++|+++|.+| ...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||++|++
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC-----
Q 035659 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----- 261 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----- 261 (655)
+|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.+.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888887765543
Q ss_pred -------------------------------------------------------hHHHHHHHHHHHHCCCCCCCHHHHH
Q 035659 262 -------------------------------------------------------PNEALSIFHELQLSKNVNPDEFTFV 286 (655)
Q Consensus 262 -------------------------------------------------------~~~A~~l~~~m~~~~~~~p~~~t~~ 286 (655)
.++|+++|++|.. + +.||..||+
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~ 493 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLI 493 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHH
Confidence 4678888888864 4 899999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 366 (655)
+++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999778999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEE
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 526 (655)
++||..+|++|+.+|+.+|+.+.|+.+.+++++++|++...|..|+++|+..|+|++|.++++.|+++|++++||+||++
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccHHHHHHHhhccCCCCCcE
Q 035659 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606 (655)
Q Consensus 527 ~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~ 606 (655)
+++.+|.|.+||.+||+.++||..+++|..+|++.||+||+..++ ++++++ |+..+++||||||++|||++||+|+||
T Consensus 733 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~-k~~~~~~hse~la~a~~l~~~~~~~~i 810 (857)
T PLN03077 733 VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVS-KDDIFCGHSERLAIAFGLINTVPGMPI 810 (857)
T ss_pred ECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHH-HHHHHHhccHHHHHHHhhhcCCCCCeE
Confidence 999999999999999999999999999999999999999999877 557777 999999999999999999999999999
Q ss_pred EEecccccCcchhHHHHHHhhhcCceEEEecCCcccccCCccccCCC
Q 035659 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653 (655)
Q Consensus 607 ~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~~g~csc~~ 653 (655)
||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 811 ~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 811 WVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999997
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-117 Score=986.54 Aligned_cols=577 Identities=35% Similarity=0.671 Sum_probs=558.0
Q ss_pred CCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH
Q 035659 33 GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109 (655)
Q Consensus 33 ~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l 109 (655)
+..|+..+|++++.+|++.+.. +++|..|.+.|+.||+.++|.|+.+|+++| ++++|+++|++|++||+++||++
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG--MLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC--CHHHHHHHHhcCCCCCeeeHHHH
Confidence 3568899999999999998876 899999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+.+.+.++|..+.+.|+.+|..++|+||++|+++|+
T Consensus 196 i~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 99999999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHH
Q 035659 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 190 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~ 269 (655)
+++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------------------------- 320 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------------------------- 320 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------------
Confidence 9999999999999999999999999999999988888877776543
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 349 (655)
+.||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|++
T Consensus 321 --------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 321 --------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred --------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 677777888888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998789999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
++.|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccH
Q 035659 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589 (655)
Q Consensus 510 ~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e 589 (655)
.|+++|+++.|++||+++++.+|.|.+||.+||+.++||.++.++..+|++.||+||+.++++++++++ |+..+.+|||
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~-~~~~~~~hse 631 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE-EKVSGRYHSE 631 (697)
T ss_pred HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH-HHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhhccCCCCCcEEEecccccCcchhHHHHHHhhhcCceEEEecCCcccccCCccccCCCCC
Q 035659 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655 (655)
Q Consensus 590 ~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~~g~csc~~~~ 655 (655)
|||++|||+++|+|.||||+||||+|+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 632 kla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 632 KLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.3e-73 Score=644.84 Aligned_cols=593 Identities=24% Similarity=0.392 Sum_probs=520.5
Q ss_pred CCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH
Q 035659 33 GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109 (655)
Q Consensus 33 ~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l 109 (655)
+.+|+..+|..++.+|...+.+ .++|..+.+.|..+++.++|+||.+|+++| +++.|.++|++|++||+++||++
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g--~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG--ELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC--ChHHHHHHHhcCCCCCeeEHHHH
Confidence 5678888899999999887766 889999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
|.+|++.|++++|+++|++| ...|+.||.+||+.++++|++.+++..+.++|..+++.|+.||..++|+||++|+++|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 99999999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC--------
Q 035659 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW-------- 261 (655)
Q Consensus 190 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-------- 261 (655)
+++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+++
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888888888777665443
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 035659 262 ----------------------------------------------------PNEALSIFHELQLSKNVNPDEFTFVSVL 289 (655)
Q Consensus 262 ----------------------------------------------------~~~A~~l~~~m~~~~~~~p~~~t~~~ll 289 (655)
+++|+++|++|...| +.||..||+.++
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll 396 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVL 396 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHH
Confidence 689999999999888 999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|++
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 035659 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 370 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p 449 (655)
+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .|
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~ 552 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK 552 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CC
Confidence 9999986 59999999999999999999999999999999986 99999999999999999999999999999999 78
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCchhHHHHHHHHH-hCCCccCCceeEEEE
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELE-PENHGALVLLSNIYAKTGKWDNVSELRKHMR-VSGLKKEPGCSSIEV 527 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~~~ 527 (655)
|..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.|+.|+...+...+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999876 5588999999999999999999999999999 679888765444332
Q ss_pred CCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccHHHH-HHHhhccCCCCCcE
Q 035659 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA-IAYGLISVEPSQPI 606 (655)
Q Consensus 528 ~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~ 606 (655)
+. +.. .+. ++++.+++++| +..||...+...+..+. ..+.+.. .|..+ ..+.+.|...+..+
T Consensus 633 ~~----l~r----~G~----~~eA~~~~~~m---~~~pd~~~~~aLl~ac~-~~~~~e~-~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 633 DL----LGR----AGK----LTEAYNFINKM---PITPDPAVWGALLNACR-IHRHVEL-GELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HH----HHh----CCC----HHHHHHHHHHC---CCCCCHHHHHHHHHHHH-HcCChHH-HHHHHHHHHhhCCCCcchHH
Confidence 22 111 112 23456666666 58899777666666554 2222211 11222 23455666555555
Q ss_pred EEecccccCcchhHHHHHHhhhcCceEEEe-------cCCcccccCCcccc
Q 035659 607 RIVKNLRVCGDCHTVAKLISKLYNREILLR-------DRYRFHHFRGGNCS 650 (655)
Q Consensus 607 ~~~~nl~~~~~~~~~~~~is~~~~~~~~~~-------d~~~~h~f~~g~cs 650 (655)
.+..-....|+..++.+....|..+.+... -.+..|-|..|--+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 444555778999999999999988733211 13467788666443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-64 Score=560.35 Aligned_cols=509 Identities=18% Similarity=0.295 Sum_probs=464.3
Q ss_pred CCCcccHHHHHHHhcCcchH---HHHHHHHHHhCC-CCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHH
Q 035659 35 QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGL-FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110 (655)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li 110 (655)
.++...|..++..|.+.+.+ .++++.|.+.|+ .++..+++.++..|.+.| .+++|.++|+.|+.||..+||.+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g--~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR--AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566788888888666655 899999999996 568888999999999999 999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 190 (655)
.+|++.|++++|.++|+.| ...|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|++||++|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC----CCeeHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhccCccccCCChHH
Q 035659 191 AMAYCVFVMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264 (655)
Q Consensus 191 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 264 (655)
++|.++|+.|.+ ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|+++ +
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld------e 597 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD------R 597 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH------H
Confidence 999999999964 8999999999999999999999999999986 689999999999999999999977 9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|.++|++|.+.+ +.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|++|.
T Consensus 598 A~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988 9999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 345 S----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 345 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
+ +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~ 755 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTI 755 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 4 6889999999999999999999999999999999999999999999999999999999999999876 9999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCChhHHHHHHHHHHh-----------------------cCCHHHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKI-----------------------HENVELAEYAC 474 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~ 474 (655)
+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999998 789999999999977543 12346799999
Q ss_pred HHHhccC-CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 035659 475 SHLLELE-PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553 (655)
Q Consensus 475 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 553 (655)
++|++.+ .+|..+|..++.++.+.+.++.+..+++.|...+..++...+..++++ + .. ...++..
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g----~----~~------~~~~A~~ 901 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG----F----GE------YDPRAFS 901 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh----h----cc------ChHHHHH
Confidence 9999987 568889999998888999999999999988887776655555544443 2 11 1234788
Q ss_pred HHHHHHhCCcccCCc
Q 035659 554 IVARLKSFGYVPNRS 568 (655)
Q Consensus 554 l~~~m~~~g~~pd~~ 568 (655)
++++|.+.|+.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 999999999999976
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-62 Score=548.35 Aligned_cols=470 Identities=20% Similarity=0.286 Sum_probs=434.5
Q ss_pred CCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC----CCCcchHH
Q 035659 35 QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWN 107 (655)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~----~~~~~~~~ 107 (655)
.++..++..++..|...+.. ..++..|. .||..+||.||.+|++.| +++.|.++|+.|. .||+.+||
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566677888888887766 44444444 389999999999999999 9999999999996 48999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 035659 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187 (655)
Q Consensus 108 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 187 (655)
+||.+|++.|+.++|.++|++| ...|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM-~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcC------CCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC
Q 035659 188 GDLAMAYCVFVMIG------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 188 g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 261 (655)
|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|+++
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d---- 631 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD---- 631 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH----
Confidence 99999999999995 47999999999999999999999999999999999999999999999999999977
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
+|+++|++|...| +.||..||++++.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|+
T Consensus 632 --eAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 632 --FALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred --HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 342 TVK----SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 342 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
+|. .||..+||+||.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.++|.+|.+. |+.|
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~p 787 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKP 787 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC
Confidence 995 58999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred CcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 418 GVKHYTCMVDMLG----RAG-------------------LLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 418 ~~~~y~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
|..+|++|++++. +++ ..++|..+|++| ++.||..+|+.++.++...+..+.+.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 9999999997743 222 246799999999 78999999999998888889999999
Q ss_pred HHHHHHhcc-CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 035659 472 YACSHLLEL-EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521 (655)
Q Consensus 472 ~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 521 (655)
.+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+.|+..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888877654 367889999999988432 368999999999999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-58 Score=510.12 Aligned_cols=490 Identities=21% Similarity=0.345 Sum_probs=408.7
Q ss_pred CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHH
Q 035659 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179 (655)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 179 (655)
+++.++|+++|.+|++.|++++|+++|+.|....+..||..+|+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 46788999999999999999999999999933345789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccC
Q 035659 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 180 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------------------------ 219 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------------------------ 219 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------------------------
Confidence 99999999999999999999999999999999999999999999999888887554
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
+.||..||+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++
T Consensus 220 ------------------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 281 (697)
T PLN03081 220 ------------------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281 (697)
T ss_pred ------------------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777777777788888888888899999999999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc
Q 035659 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419 (655)
Q Consensus 340 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 419 (655)
|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||.
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~ 360 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDI 360 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhc
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE-PENHGALVLLSNIYAKT 498 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 498 (655)
.+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999996 5899999999999999999999999999999876 55788999999999999
Q ss_pred CCchhHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhh
Q 035659 499 GKWDNVSELRKHMRV-SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577 (655)
Q Consensus 499 g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~ 577 (655)
|++++|.++|+.|.+ .|+.|+...+...++. + ...+..++ +.++ +++.+..||..++...+..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~----l----~r~G~~~e----A~~~---~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIEL----L----GREGLLDE----AYAM---IRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHH----H----HhcCCHHH----HHHH---HHHCCCCCCHHHHHHHHHHH
Confidence 999999999999976 5887766544433322 1 12223332 3334 44567888887766666555
Q ss_pred hhhhhhcccccHHHHHHHhhccCCCCCcEEEecccccCcchhHHHHHHhhhcCceEEEec-------CCcccccCCccc
Q 035659 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD-------RYRFHHFRGGNC 649 (655)
Q Consensus 578 ~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d-------~~~~h~f~~g~c 649 (655)
. +.+.+..--+.....+++.+...+..+.+++-+..+|+..+|.++...|..+.+-..+ .+..|.|-.|-.
T Consensus 505 ~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 505 R-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred H-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 4 3222211111111224555544455556777788999999999999999988653222 345677766543
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.5e-31 Score=219.53 Aligned_cols=106 Identities=56% Similarity=1.016 Sum_probs=97.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhh--------hhhcccccHHHH
Q 035659 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ--------EQALNLHSERLA 592 (655)
Q Consensus 521 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~~~~~~e~la 592 (655)
+++|+.+ |.|.+||.+||+. ++..+|...||.|++..+.+++++++ + +..+.+||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEE-KHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhh-hhhcccccchhhhhccHHHHH
Confidence 6789876 9999999999987 67778888999999999888887765 4 568899999999
Q ss_pred HHHhhccCCCCCcEEEeccc-ccCcchhHHHHHHhhhcCceEEEecCCcccccC
Q 035659 593 IAYGLISVEPSQPIRIVKNL-RVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645 (655)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~ 645 (655)
++|||+++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999999 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=9.9e-26 Score=262.00 Aligned_cols=425 Identities=12% Similarity=0.037 Sum_probs=242.2
Q ss_pred hhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHH
Q 035659 71 YSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147 (655)
Q Consensus 71 ~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~ 147 (655)
.....++..|.+.| ++++|.++++.+.. .+..+|+.+...+...|++++|...|+++ ... .+.+...+..+..
T Consensus 432 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~-~~~~~~~~~~la~ 507 (899)
T TIGR02917 432 RADLLLILSYLRSG--QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA-LSI-EPDFFPAAANLAR 507 (899)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH-Hhh-CCCcHHHHHHHHH
Confidence 34445555666666 66666666666542 34455666666666666666666666666 221 1123334555555
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHH
Q 035659 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKA 224 (655)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (655)
.+...|++++|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666666666554 44555666666666666666666666665533 2344555666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 035659 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304 (655)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 304 (655)
+.+++++.+.. +.+..+|..+...+...|+++ +|+..|+++.... +.+...+..+..++.+.|++++|..+
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN------KAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666665432 334555666666666666644 6666666665432 33444555566666666666666666
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
++++.+.. +.+..++..++..+.+.|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++... .|
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 734 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--AP 734 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CC
Confidence 66665543 33455566666666666666666666666543 23445555555666666666666666666553 23
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 459 (655)
+..++..+..++.+.|+.++|.+.++.+.+. ...+...+..+...|.+.|++++|.+.|+++ .. .++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345555555566666666666666655542 2233455555555666666666666666554 11 223455555555
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+...|+ .+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555 555555555555555555555555555555555555555555555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.5e-25 Score=257.41 Aligned_cols=456 Identities=13% Similarity=0.021 Sum_probs=378.6
Q ss_pred cccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHH
Q 035659 38 PHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIR 111 (655)
Q Consensus 38 ~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~ 111 (655)
...+..+...+...++. ...+..+.+.. +.+...+..+...|...| ++++|.+.|+.... .+...+..++.
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG--DPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 34455555555555555 55555555542 235667788888888889 99999999987753 23456677888
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.+.+.|++++|+.+++.+ .. ..+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKL-EK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHH-HH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999998 33 334567788889999999999999999999998875 556777888999999999999
Q ss_pred HHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHH
Q 035659 192 MAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268 (655)
Q Consensus 192 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l 268 (655)
+|.+.|+++.+ .+..+++.+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...|+.+ +|+.+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~------~A~~~ 589 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK------KALAI 589 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH------HHHHH
Confidence 99999998764 466788999999999999999999999997764 345677888899999999966 99999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 035659 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--- 345 (655)
Q Consensus 269 ~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 345 (655)
++++... .+.+..+|..+..++...|++++|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+
T Consensus 590 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 590 LNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999765 36677889999999999999999999999998865 45677888999999999999999999998764
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHH
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l 425 (655)
.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|+..++..+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l 742 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKL 742 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHH
Confidence 357789999999999999999999999998864 446677888888899999999999999998753 5666788889
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 426 VDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
..++.+.|++++|.+.++++ ....+..++..+...|...|+.++|...++++++..|+++..+..++.++...|+ .+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 99999999999999999887 2334577888888999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|...+++..+.
T Consensus 822 A~~~~~~~~~~ 832 (899)
T TIGR02917 822 ALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-20 Score=185.68 Aligned_cols=380 Identities=14% Similarity=0.172 Sum_probs=326.0
Q ss_pred CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChh-HHHH
Q 035659 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF-ISNS 179 (655)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 179 (655)
-..+|..+...+-..|++++|+.+++.|+.. +| ....|..+..++...|+.+.|.+.+...++.. |+.. +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 3457888999999999999999999999432 34 46678889999999999999999999998874 5544 3445
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCc
Q 035659 180 LIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD-EVTMVAVLSACAKKRD 255 (655)
Q Consensus 180 li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 255 (655)
+-...-..|++++|...+.+..+ | =.++|+.|...+-..|+...|+.-|++.+.. .|+ ...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 55566668999999999987655 4 3578999999999999999999999998864 455 5678889999988888
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (655)
++ +|+..|.+... ..|+ ...+..+...|...|.+|.|...|++.++.. +.-+..|+.|..++-..|++.
T Consensus 268 ~d------~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 268 FD------RAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred ch------HHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchH
Confidence 66 99999998876 4555 6678888888999999999999999999864 334779999999999999999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 335 KALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 335 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
+|.+.+++... ....+.+.|...|...|..++|..+|.+..+ +.|. ...++.|...|-.+|++++|...|++..
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999998764 3567899999999999999999999999988 5665 4668889999999999999999999987
Q ss_pred hhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 411 PVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 411 ~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.++|+ ...|+.+...|...|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..++.+++++|+.+.+
T Consensus 416 ---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 416 ---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred ---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 67888 578999999999999999999999886 67777 4688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchh
Q 035659 488 LVLLSNIYAKTGKWDN 503 (655)
Q Consensus 488 ~~~l~~~~~~~g~~~~ 503 (655)
|..++.++--..+|.+
T Consensus 493 ~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHhcccc
Confidence 9999888776667766
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=5.5e-19 Score=175.72 Aligned_cols=412 Identities=15% Similarity=0.127 Sum_probs=328.3
Q ss_pred hcCCCCChHHHHHHhhcCCCCCc-ch--HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchH
Q 035659 81 ALGTFSSLEYAREMFDQIPQPNL-YT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157 (655)
Q Consensus 81 ~~~g~~~~~~A~~~f~~~~~~~~-~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 157 (655)
-+.| ++.+|++--...-+.|. .+ .-.+-..+.+..+.+....--... .+ -..--..+|..+.+.+-..|+++.
T Consensus 59 yq~g--d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a-~r-~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 59 YQGG--DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLA-IR-KNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred Hhcc--CHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhh-hh-ccchHHHHHHHHHHHHHHhchHHH
Confidence 3455 77777664443332221 11 111223444545554433322222 11 122346789999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHH-HHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWN-SMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 158 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
|..+++.+++.. +..+..|..+..+|...|+.+.|.+.|.+..+ |+..... .+...+-..|+..+|...|.+.++.
T Consensus 135 al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 135 ALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 999999999885 45678899999999999999999999988776 4444333 3444445579999999999888775
Q ss_pred CCCCC-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 035659 235 NVKPD-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312 (655)
Q Consensus 235 g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 312 (655)
.|. ...|+.|...+-..|+.. .|+.-|++... +.|+ ...|-.|...|...+.++.|...|.+.....
T Consensus 214 --qp~fAiawsnLg~~f~~~Gei~------~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 214 --QPCFAIAWSNLGCVFNAQGEIW------LAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred --CCceeeeehhcchHHhhcchHH------HHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 344 567888888898999976 99999999876 5565 5588899999999999999999999888753
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTN 388 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 388 (655)
+....++..+...|...|.+|.|+..+++..+. -...|+.|..++-..|+..+|...|.+... ..|+ ....+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 345677888888999999999999999998753 357899999999999999999999999988 4555 567889
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 465 (655)
|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..+++. .++|+ ...++.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998874 4666 567899999999999999999999986 88898 468999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|.+.+.+++..+|.-..++..|+.+|-..|++.+|++-++...+.
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999887663
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.5e-17 Score=194.82 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=314.6
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcc-hH----------------HHHHHHHHh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLY-TW----------------NTLIRAYSS 115 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~-~~----------------~~li~~~~~ 115 (655)
++.+..+... -+.|+.++..+...+.+.| +.++|.+.+++..+ |+.. .+ -.+...+.+
T Consensus 48 ~~~l~kl~~~-~p~~p~~~~~~~~~~l~~g--~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 48 RQSLYRLELI-DPNNPDVIAARFRLLLRQG--DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHcc-CCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 4444444432 1236788888899999999 99999999998864 3221 12 223346788
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcc-hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEF-TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
.|++++|+..|+.+ .. +.+|+.. ............|+.++|.+.++.+++.. +.+...+..+...+...|+.++|+
T Consensus 125 ~g~~~eA~~~~~~~-l~-~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKL-FN-GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHH-cc-CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHH
Confidence 99999999999998 33 2233321 11111222234589999999999999885 557778889999999999999999
Q ss_pred HHHhhcCCCCe-----------------------eHHH----------------------------------HHHHHHHh
Q 035659 195 CVFVMIGKKDV-----------------------VSWN----------------------------------SMISGFVQ 217 (655)
Q Consensus 195 ~~f~~~~~~~~-----------------------~~~~----------------------------------~li~~~~~ 217 (655)
..|+++.+... ..+. .....+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99987642110 0000 11345667
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH------------
Q 035659 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF------------ 285 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~------------ 285 (655)
.|++++|+..|++..+.. +-+...+..+...+.+.|+.+ +|+..|++..+...-.++...+
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~------eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA------RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 899999999999998763 236788889999999999976 9999999988754111221111
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHH---------
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWST--------- 353 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--------- 353 (655)
......+.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|++.|+++.+. +...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 122345678899999999999999875 456677888899999999999999999987642 2222222
Q ss_pred ---------------------------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcH
Q 035659 354 ---------------------------------MIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLV 399 (655)
Q Consensus 354 ---------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 399 (655)
+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 223455678999999999998874 454 55666778889999999
Q ss_pred HHHHHHHHHcchhcCccCC-cchHH--------------------------------------------HHHHHHHhcCC
Q 035659 400 DEGRMFFNQMEPVYGVVPG-VKHYT--------------------------------------------CMVDMLGRAGL 434 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~-~~~y~--------------------------------------------~li~~~~~~g~ 434 (655)
++|...++.+.+. .|+ ...+. .+.+.+...|+
T Consensus 512 ~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 512 SQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999988653 232 22221 12334555666
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 435 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.++|.++++.-| ++...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 589 ~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 589 EAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666666666432 345566778888899999999999999999999999999999999999999999999999877653
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=8.3e-18 Score=197.09 Aligned_cols=419 Identities=12% Similarity=0.030 Sum_probs=317.7
Q ss_pred HhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH-----------
Q 035659 78 TPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP----------- 143 (655)
Q Consensus 78 ~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~----------- 143 (655)
..+...| ++++|+..|++..+ .+...+..+...|.+.|++++|+..|++.+....-.++...+.
T Consensus 277 ~~~~~~g--~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSG--QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4455667 99999999987653 3567788888899999999999999998833321111111111
Q ss_pred -HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCC
Q 035659 144 -FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGG 219 (655)
Q Consensus 144 -~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 219 (655)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|+++.+ .+...+..+...|. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 12335667899999999999999875 45667788889999999999999999988765 24556777777764 45
Q ss_pred ChhHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 035659 220 FFEKAIELYREMEMENVK--------PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291 (655)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~ 291 (655)
+.++|+.+++.+...... .....+..+...+...|+++ +|++.|++..+.. +-+...+..+...
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~------eA~~~~~~Al~~~--P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA------QAAELQRQRLALD--PGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH------HHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 789999888766432110 01223455666777888866 9999999998753 3345677788889
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC----h---------hHHHHHHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD----V---------FVWSTMIAGF 358 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~ 358 (655)
+.+.|++++|...++++.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998754 3455566666667788999999999999886421 1 1123456678
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHH
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~ 437 (655)
...|+.++|+.+++. .+++...+..+...+.+.|+.++|+..|+.+.+. .| +...+..++..|...|++++
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHH
Confidence 899999999999882 2345566777888899999999999999999864 44 47788999999999999999
Q ss_pred HHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchhHHHHHH
Q 035659 438 AVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH------GALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 438 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
|++.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|.+.++
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999987 34444 56777788889999999999999999999876544 356667899999999999999998
Q ss_pred HHHh-CCCc
Q 035659 510 HMRV-SGLK 517 (655)
Q Consensus 510 ~m~~-~g~~ 517 (655)
.... .|+.
T Consensus 736 ~Al~~~~~~ 744 (1157)
T PRK11447 736 DAMVASGIT 744 (1157)
T ss_pred HHHhhcCCC
Confidence 7753 3443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.8e-18 Score=180.66 Aligned_cols=299 Identities=15% Similarity=0.089 Sum_probs=181.6
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHhccCcc
Q 035659 183 FYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD---EVTMVAVLSACAKKRDL 256 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 256 (655)
.+...|++++|...|+++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666543 2 233555666666666666666666666554321111 12344444444444443
Q ss_pred ccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 035659 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 257 ~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (655)
+ +|+.+|+++.... +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~------~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------- 178 (389)
T PRK11788 124 D------RAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------- 178 (389)
T ss_pred H------HHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------
Confidence 3 5555555544321 22334444444444444444444444444444321110000
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 337 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
....|..+...+.+.|+.++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 244 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---D 244 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 01124455566667777777777777776642 223445666667777788888888888877643 2
Q ss_pred CC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 417 PG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 417 p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|++. .+..+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHH
Confidence 33 345677788888888888888888876 4456766677888888889999999999999888888664 4555555
Q ss_pred HHHh---cCCchhHHHHHHHHHhCCCccCCc
Q 035659 494 IYAK---TGKWDNVSELRKHMRVSGLKKEPG 521 (655)
Q Consensus 494 ~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 521 (655)
.+.. .|+.+++..+++.|.+++++++|.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 558999999999999999888886
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.5e-18 Score=177.60 Aligned_cols=294 Identities=12% Similarity=0.095 Sum_probs=172.9
Q ss_pred HHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcC
Q 035659 113 YSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD---LFISNSLIHFYAICG 188 (655)
Q Consensus 113 ~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 188 (655)
+...|++++|+..|.++ ... .| +..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEM-LKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666 222 22 233455555555566666666666665555321111 234566667777777
Q ss_pred CHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCccccCCC
Q 035659 189 DLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE----VTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 189 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~~ 261 (655)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|+.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---- 197 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD---- 197 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH----
Confidence 77777777776654 34556777777777777777777777777665432221 12344555555666644
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
+|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++
T Consensus 198 --~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 198 --AARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred --HHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6766776665532 223445555666666677777777777776654322223455666666777777777776666
Q ss_pred hcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHcchhcCcc
Q 035659 342 TVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH---SGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 342 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~ 416 (655)
++.+ |+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.
T Consensus 274 ~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~ 350 (389)
T PRK11788 274 RALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLK 350 (389)
T ss_pred HHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHh
Confidence 6543 34444566666666777777777777666653 5666666666655443 34666677777666654 555
Q ss_pred CCcc
Q 035659 417 PGVK 420 (655)
Q Consensus 417 p~~~ 420 (655)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 5544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6.8e-17 Score=177.84 Aligned_cols=389 Identities=12% Similarity=0.037 Sum_probs=281.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 185 (655)
+...-..+.+.|++++|+..|.+. .. ..|+...|..+..++.+.|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~a-l~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKA-IE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445566777889999999999887 33 45777778888888888899999999998888875 445677888888899
Q ss_pred hcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--------------
Q 035659 186 ICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS-------------- 248 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-------------- 248 (655)
..|++++|..-|...... +......++.-+.. ..+.....+..+.. +++...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999988777544321 11111111111111 11111111111110 000001110000
Q ss_pred -------------------HH---hccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 035659 249 -------------------AC---AKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIH 305 (655)
Q Consensus 249 -------------------~~---~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 305 (655)
.. ...+. +++|++.|++....+...|+ ...+..+...+...|++++|...+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~------y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADES------YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhh------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 01122 45999999999876434454 456777778888999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Q 035659 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP- 381 (655)
Q Consensus 306 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 381 (655)
++.++.. +.+...|..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Ccc
Confidence 9999864 33466888899999999999999999998754 36788999999999999999999999999985 45
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh-h-------
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA-S------- 452 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~------- 452 (655)
+...+..+..++.+.|++++|+..|+...+. ...+...|+.+..+|...|++++|++.|++. .+.|+. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 4566777788899999999999999998753 2234678899999999999999999999885 444431 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.++..+..+...|++++|+..++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222233445699999999999999999999999999999999999999999999987663
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=4.3e-16 Score=174.75 Aligned_cols=445 Identities=9% Similarity=-0.007 Sum_probs=299.7
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 132 (655)
...+...++..- -++.++..|...|.+.| +.++|+..+++... |+-.-|..++..+ +++.+|..+++++...
T Consensus 64 ~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g--~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 64 IREFEYIHQQVP-DNIPLTLYLAEAYRHFG--HDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh
Confidence 445555554422 24677788888888888 88888888777653 2212222222222 5555565665555222
Q ss_pred C-------------------------------------CCCCCcchHHHH-HHHHHccCCchHHHHHHHHHHHhCCCCCh
Q 035659 133 S-------------------------------------PYFPNEFTFPFV-IKAAARLVQFRVGQAIHGMVIKSSFEDDL 174 (655)
Q Consensus 133 ~-------------------------------------~~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 174 (655)
. ...|+..+.... ...+.+.++++.+..++..+.+.+ +.+.
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~ 216 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSA 216 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCH
Confidence 1 112233333444 566777788888888888888876 4445
Q ss_pred hHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHhc
Q 035659 175 FISNSLIHFYAI-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK-PDEVTMVAVLSACAK 252 (655)
Q Consensus 175 ~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~ 252 (655)
.-...|..+|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++...-.. |...++..++.-+..
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~ 295 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSA 295 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccC
Confidence 556666677777 366 77777776544567888889999999999999999999988654322 444444433322222
Q ss_pred c------------------------------CccccCCC-----------------------------------------
Q 035659 253 K------------------------------RDLEFGRW----------------------------------------- 261 (655)
Q Consensus 253 ~------------------------------~~~~~~~~----------------------------------------- 261 (655)
. +.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~ 375 (987)
T PRK09782 296 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPAN 375 (987)
T ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCC
Confidence 1 11110000
Q ss_pred ----------------hHHHHHHHHHHHH-CC------------------------------------------------
Q 035659 262 ----------------PNEALSIFHELQL-SK------------------------------------------------ 276 (655)
Q Consensus 262 ----------------~~~A~~l~~~m~~-~~------------------------------------------------ 276 (655)
.++|..+|++... .+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 2233333333222 00
Q ss_pred -------------CC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 277 -------------NV-NP--DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 277 -------------~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+. ++ +...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01 12 33344444444443 66677888777766643 55444444455556899999999999
Q ss_pred hhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 341 HTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 341 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
+++.. ++...+..+...+.+.|+.++|..+|++..+.. |+. ..+..+.......|++++|...+++..+ +.|
T Consensus 533 rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P 607 (987)
T PRK09782 533 QKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAP 607 (987)
T ss_pred HHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCC
Confidence 87754 344567777788899999999999999998754 443 3333344455567999999999999984 467
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+.++|+..++++++..|.++..+..++.++
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888999999999999999999999986 55565 567788888999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 035659 496 AKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~g 515 (655)
...|++++|...+++..+..
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=9.2e-16 Score=172.01 Aligned_cols=188 Identities=9% Similarity=0.032 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcH
Q 035659 327 YTKCGNLDKALEVFHTVKSRD--VF--VWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~ 399 (655)
+...|++++|++.|+.+.+.+ .. .-..+...|...|++++|+..|+++....... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 345577777777777766432 11 11224556777777777777777766532111 123344555566777777
Q ss_pred HHHHHHHHHcchhcC----------ccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc
Q 035659 400 DEGRMFFNQMEPVYG----------VVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH 464 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~----------~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 464 (655)
++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777664310 0112 123455666777888888888888776 2233 456777777788888
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|++++|++.++++++++|++...+..++..+...|+|++|.++++.+.+.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888777653
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=5.9e-16 Score=169.89 Aligned_cols=324 Identities=10% Similarity=-0.036 Sum_probs=162.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 109 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
++..+.+.|++++|+.+++.. .... +-+...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~-l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDR-VLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHH-HHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 344445555555555555554 2211 1122233333344444555555555555555543 333444455555555555
Q ss_pred CHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 189 DLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 189 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
++++|...|++..+ .+...|..+...+.+.|++++|...++.+......
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---------------------------- 176 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP---------------------------- 176 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------------------------
Confidence 55555555554433 23334455555555555555555555544333211
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
+...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...|+....
T Consensus 177 ---------------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 177 ---------------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred ---------------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11111111 12344445555555544444432112222233334444455555555555554432
Q ss_pred ---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 346 ---RDVFVWSTMIAGFAMYGCGRE----ALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 346 ---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
.+...+..+...|.+.|++++ |+..|++..+. .| +...+..+...+...|++++|...++...+. .|
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P 315 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HP 315 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 133444555555555555553 56666666653 23 3445556666666667777777766666542 33
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 418 G-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVW-GALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 418 ~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+ ...+..+..+|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3 344555666666777777777776665 234443332 234455667777777777777777776654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.1e-15 Score=166.00 Aligned_cols=410 Identities=10% Similarity=-0.034 Sum_probs=293.7
Q ss_pred HHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHc
Q 035659 75 KLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAAR 151 (655)
Q Consensus 75 ~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~ 151 (655)
.+-..|.+.| +++.|+..|++.. .|+...|..+..+|.+.|++++|+..+... .. +.| +...+..+..++..
T Consensus 132 ~~G~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~a-l~--l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNK--DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAA-LE--LDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHH-HH--cCCCCHHHHHHHHHHHHH
Confidence 4456677778 9999999998865 467778888999999999999999999988 33 234 45577888889999
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------------------------
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---------------------------- 203 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------------------- 203 (655)
.|++++|..-+..+...+-..+... ..++..+.+......+...++.-+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999887776655431122211 11111111111112222222211110
Q ss_pred -C---eeHHHHHHHHH---HhCCChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHH
Q 035659 204 -D---VVSWNSMISGF---VQGGFFEKAIELYREMEMEN-VKP-DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274 (655)
Q Consensus 204 -~---~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~ 274 (655)
+ ...+..+...+ ...+++++|++.|++..+.+ ..| +...|..+...+...|+++ +|+..|++...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~------eA~~~~~kal~ 359 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL------EALADLSKSIE 359 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHH
Confidence 0 00111111111 12367999999999998875 234 3456778888888899976 99999999987
Q ss_pred CCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhH
Q 035659 275 SKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFV 350 (655)
Q Consensus 275 ~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 350 (655)
. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...
T Consensus 360 l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 360 L---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred c---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 4 455 5688888888999999999999999998874 45678999999999999999999999998864 35677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-ch-------
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KH------- 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~------- 421 (655)
|..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...|+...+. .|+. ..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 888889999999999999999999874 34 4677888888999999999999999998753 3431 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+.....+ ...
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~ 582 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAI 582 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHH
Confidence 122223344579999999999885 55565 45788999999999999999999999999876543322 222
Q ss_pred CchhHHHHHHHHHh
Q 035659 500 KWDNVSELRKHMRV 513 (655)
Q Consensus 500 ~~~~a~~~~~~m~~ 513 (655)
.+.+|.++....++
T Consensus 583 ~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 583 SYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555444444
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.7e-15 Score=166.26 Aligned_cols=319 Identities=10% Similarity=0.006 Sum_probs=238.3
Q ss_pred HHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHc
Q 035659 76 LFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAAR 151 (655)
Q Consensus 76 ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~ 151 (655)
++....+.| ++++|..+++.... .+...+..++.+....|++++|+..|+++ .. ..| +...+..+...+..
T Consensus 48 ~~~~~~~~g--~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~-l~--~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 48 FAIACLRKD--ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKL-LA--VNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHhcC--CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHH
Confidence 344556677 99999999887642 34445666667778899999999999999 33 234 44567777788899
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELY 228 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 228 (655)
.|+++.|...++.+++.. +.+...+..+...|...|++++|...++.+.. |+ ...+..+ ..+.+.|++++|+..+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999999874 55677889999999999999999999987643 33 3344333 4488899999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHH----HHHH
Q 035659 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI----GVQI 304 (655)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~ 304 (655)
+.+.+....++...+..+..++...|+.+ +|+..|++..... +.+...+..+..++...|++++ |...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~------eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQ------EAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHH------HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 99877654444555555667777888866 8888888887653 4456677777788888888875 7888
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
++++.+.. +.+..++..+...+.+.|++++|...+++..+ .+...+..+...|.+.|++++|+..|+++... .|
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 88888764 44667788888888888888888888887653 24556777777888888888888888888764 34
Q ss_pred CHHH-HHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 382 NAVT-FTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 382 ~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
+... +..+..++...|+.++|...|+...+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4433 333455677788888888888877643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.7e-15 Score=169.85 Aligned_cols=407 Identities=11% Similarity=0.024 Sum_probs=297.7
Q ss_pred hhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHH
Q 035659 70 PYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146 (655)
Q Consensus 70 ~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll 146 (655)
+...+-.+......| +.++|++++.+... .+...+..+...+.+.|++++|..+|++.+... +.+...+..+.
T Consensus 15 ~~~~~d~~~ia~~~g--~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 15 NNQIADWLQIALWAG--QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 333444555667778 99999999988653 344458889999999999999999999973332 22345566777
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhH
Q 035659 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 223 (655)
..+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 78889999999999999999884 55566 88889999999999999999998865 3 45567778888889999999
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHhccCccccCCC--hHHHHHHHHHHHHCCCCCCCHH-HHH----HHHH
Q 035659 224 AIELYREMEMENVKPDE------VTMVAVLSACAKKRDLEFGRW--PNEALSIFHELQLSKNVNPDEF-TFV----SVLS 290 (655)
Q Consensus 224 A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~~~~--~~~A~~l~~~m~~~~~~~p~~~-t~~----~ll~ 290 (655)
|++.++.... .|+. .....++......+..+.++. .++|++.++.+.....-.|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2331 111222222222111110000 1478888988886421233321 111 1134
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcC
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD-------VFVWSTMIAGFAMYG 362 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 362 (655)
++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ...+..+..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 556779999999999999987632 321 22335778999999999999999976432 234566677889999
Q ss_pred ChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 363 CGREALDLFSRMQEAKV-----------KPNA---VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
++++|..+++++..... .|+. ..+..+...+...|+.++|+++++++... .+.+...+..+..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999987521 1332 23455667788999999999999999863 33346788899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
+...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999987 55676 56777777888999999999999999999999987544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.7e-14 Score=157.22 Aligned_cols=418 Identities=10% Similarity=0.043 Sum_probs=298.3
Q ss_pred hhcCCCCChHHHHHHhhcCCCCCcc---hHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH---HHHHHccC
Q 035659 80 CALGTFSSLEYAREMFDQIPQPNLY---TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV---IKAAARLV 153 (655)
Q Consensus 80 y~~~g~~~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l---l~~~~~~~ 153 (655)
..+.| +++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+..+ ...+...|
T Consensus 44 ~~r~G--d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka-~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAG--DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY-Q----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCC--CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh-c----cCCCCCHHHHHHHHHHHHHcC
Confidence 36778 999999999998753333 2338888888999999999999988 3 4444433333 44677789
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHh--CCChhHHHHHHHHH
Q 035659 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ--GGFFEKAIELYREM 231 (655)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m 231 (655)
+++.|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999986 55577788889999999999999999999987544333334445444 56666699999999
Q ss_pred HHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH------HHHHHHH-----hccCC---
Q 035659 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF------VSVLSAC-----AQLGA--- 297 (655)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~------~~ll~~~-----~~~g~--- 297 (655)
.+.. +-+...+..+..+..+.|-.. .|+++..+-..- +.+...-. ...+.-- ....+
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~------~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVE------PALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcH------HHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9874 334666778888888888755 677665543311 22221111 1111100 01122
Q ss_pred HHHHHHHHHHHHHc-C-CCCchhh-HHH---HHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHH
Q 035659 298 MDIGVQIHAKMKKQ-G-IKLNCYL-TTS---LIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 298 ~~~a~~~~~~~~~~-g-~~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 367 (655)
.+.|..-++.+... + .++.... ..+ .+-++.+.|+..++++.|+.+... ...+--++..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 33444445554442 1 1222122 223 344567889999999999999853 234566778899999999999
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC----------ccCC---cchHHHHHHHH
Q 035659 368 LDLFSRMQEAK-----VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG----------VVPG---VKHYTCMVDML 429 (655)
Q Consensus 368 ~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~y~~li~~~ 429 (655)
+.+|+++.... ..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999986643 122333356788899999999999999999976311 0122 23345567788
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 430 GRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
...|++.+|++.++++ ... -|...+..+...+...|++..|++.++.+..++|.+..+....+..+...|+|.+|.++
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8999999999999997 223 36778889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhC
Q 035659 508 RKHMRVS 514 (655)
Q Consensus 508 ~~~m~~~ 514 (655)
.+...+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 8777653
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.6e-13 Score=131.61 Aligned_cols=401 Identities=16% Similarity=0.170 Sum_probs=270.7
Q ss_pred cHHHHHHHhcC--cchHHHHHHHHHHhCCCCChhhhhHHHHh---hhcCCC----------------------CChHHHH
Q 035659 40 PVFSLIKQCKN--IKQLKQIHTQMLRTGLFFDPYSASKLFTP---CALGTF----------------------SSLEYAR 92 (655)
Q Consensus 40 ~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---y~~~g~----------------------~~~~~A~ 92 (655)
+=++|++.-++ ..|.--+++.|...|.+.+..+.-.|+.. |....- .+=+-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 34455544333 23447889999999988777766665543 322210 0002233
Q ss_pred HHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC
Q 035659 93 EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172 (655)
Q Consensus 93 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 172 (655)
-+|+..| +...++..||.|+++-...+.|.+++.+. .....+.+..+||.+|.+.+- ..++++..+|+...+.|
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 3344333 34467778888888777777888888777 666667777788877776543 23377777777777778
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
|.+++|+++.+.++.|+++.|++. |++++.+|++.|+.|...+|..+|..+.+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 888888888877777777777643 57889999999999999999999999998
Q ss_pred cCccccCCChHHHHHHHHHHHHC--C-CC---CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCCc---hh
Q 035659 253 KRDLEFGRWPNEALSIFHELQLS--K-NV---NP-DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IKLN---CY 318 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~--~-~~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~ 318 (655)
.++.. ..|..++.+++.+ | .+ .| |...|...++.|.+..+.+.|.+++.-+.... +.++ ..
T Consensus 325 e~dp~-----k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 325 ESDPQ-----KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred cCCch-----hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 88753 1455566555432 1 02 23 56678999999999999999999998776421 2232 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
-|..+....|+...++.-...|+.|.. ++..+...++.+..-.|+++-.-+++..|+..|..-+...-..++..++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 567788888999999999999999875 4666777778888888888888888888887764444443333333333
Q ss_pred ccC--------------------cHHHHH-HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------C
Q 035659 395 HSG--------------------LVDEGR-MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-------P 446 (655)
Q Consensus 395 ~~g--------------------~~~~a~-~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~ 446 (655)
+.. ++.++. .--.++. ...-.....++..-.+.|.|+.++|.+++.-. +
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 322 111111 1111122 22334456778888889999999998888654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
..|......-++.+..+.++...|..+++-+...+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44555455566777778888888888888886655
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=2.2e-13 Score=153.15 Aligned_cols=450 Identities=10% Similarity=0.024 Sum_probs=310.8
Q ss_pred HHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhc-CCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcH
Q 035659 45 IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120 (655)
Q Consensus 45 l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~-~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 120 (655)
.+.+...++. ..++..+.+.+.. +......|-.+|.. .+ + +.|..+++...+.|...+..+...|.+.|+.+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~--~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL--D-DRLLALQSQGIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC--H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHH
Confidence 5556666664 4555556665532 34446666667777 46 6 88888877655567888889999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCcchHHHHH------------------------------HHHHccCCchHHHHHH--------
Q 035659 121 QSFMIFLQLVYNSPYFPNEFTFPFVI------------------------------KAAARLVQFRVGQAIH-------- 162 (655)
Q Consensus 121 ~A~~~~~~m~~~~~~~pd~~t~~~ll------------------------------~~~~~~~~~~~a~~~~-------- 162 (655)
+|..+++++.....-.|+..++.-++ ..+.+.++++.++++.
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 99999888722211124333332222 2223333333333221
Q ss_pred ---------------------HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----eeHHHHHHHHH
Q 035659 163 ---------------------GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD----VVSWNSMISGF 215 (655)
Q Consensus 163 ---------------------~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~ 215 (655)
..+.+.. +-+....--+.-...+.|+.++|.++|+..-. ++ ...-+-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 1111110 11222222233344567888888888877654 22 22344667777
Q ss_pred HhCCC---hhHHHHH------------HH----------HHHHC-CC-CC--CHhhHHHHHHHHhccCccccCCChHHHH
Q 035659 216 VQGGF---FEKAIEL------------YR----------EMEME-NV-KP--DEVTMVAVLSACAKKRDLEFGRWPNEAL 266 (655)
Q Consensus 216 ~~~g~---~~~A~~~------------~~----------~m~~~-g~-~p--~~~t~~~ll~~~~~~~~~~~~~~~~~A~ 266 (655)
.+.+. ..+++.+ .. ..... +. ++ +...|..+..++.. ++.. +|+
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~------eAi 496 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG------VAL 496 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH------HHH
Confidence 77665 3333333 11 11111 12 23 45566666666665 5543 899
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 035659 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346 (655)
Q Consensus 267 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 346 (655)
..|.+... ..|+......+..++...|++++|...++++... +|+...+..+...+.+.|+.++|.+.|+...+.
T Consensus 497 ~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 497 YAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98888776 3477655545555667899999999999998664 344555677788899999999999999988765
Q ss_pred ChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchH
Q 035659 347 DVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHY 422 (655)
Q Consensus 347 ~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y 422 (655)
+...++... ......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++.... ..|+ ...+
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~ 646 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQ 646 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHH
Confidence 443333333 333445999999999999998 467888899999999999999999999999985 3565 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+....+..+
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 88888999999999999999986 4455 467899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCC
Q 035659 501 WDNVSELRKHMRVSGL 516 (655)
Q Consensus 501 ~~~a~~~~~~m~~~g~ 516 (655)
++.|.+-++.......
T Consensus 727 ~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 727 FRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999988877665444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=3.3e-12 Score=140.84 Aligned_cols=421 Identities=10% Similarity=0.007 Sum_probs=303.9
Q ss_pred HHHHHHHHHhCCCCC--hhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH---HHHHHhCCCcHHHHHHHHHh
Q 035659 55 KQIHTQMLRTGLFFD--PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL---IRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m 129 (655)
...+..+++. .|+ +.++ .++..+...| +.++|+..+++...|+...+..+ ...|...|++++|+++|+++
T Consensus 54 l~~L~qaL~~--~P~~~~av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 54 LDYLQEESKA--GPLQSGQVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHhh--CccchhhHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444443 333 2344 8888888889 99999999999887655444433 34677889999999999999
Q ss_pred hhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Cee
Q 035659 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVV 206 (655)
Q Consensus 130 ~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~ 206 (655)
+... +-|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.++++.+ | +..
T Consensus 129 L~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 129 LKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 4433 223455667778888999999999999999877 45566666666666566777679999999875 4 566
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH------HHHHHHHh-ccCcc-ccCCChHHHHHHHHHHHHCCCC
Q 035659 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM------VAVLSACA-KKRDL-EFGRWPNEALSIFHELQLSKNV 278 (655)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~~-~~~~~-~~~~~~~~A~~l~~~m~~~~~~ 278 (655)
.+..+...+.+.|-...|+++..+-... +.+...-+ ...++.-. ..... +.-...+.|+.-++.+...-+-
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 7788999999999999999877653321 11111111 11111100 00000 0000145677777777653222
Q ss_pred CCC-HH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------
Q 035659 279 NPD-EF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR------- 346 (655)
Q Consensus 279 ~p~-~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 346 (655)
.|. .. ...-.+-++...++..++.+.++.+...+.+.-..+-.++.++|...++.++|..+|+.+...
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~ 363 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN 363 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC
Confidence 232 22 222445678889999999999999999887766778899999999999999999999998542
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHHH-HHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 347 --DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-------------KPNAVT-FTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 347 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
+......|.-+|...+++++|..+++++.+... .||-.. +..++..+...|++.+|++.++.+.
T Consensus 364 ~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 364 SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233357788999999999999999999987311 123333 3344566889999999999999997
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.. -+-|......+.+.+...|+..+|++.++.. ...|+ ..+....+.++...+++.+|..+.+.+++..|++..+
T Consensus 444 ~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 444 ST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 53 3446888999999999999999999999776 34555 5666777888889999999999999999999998744
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=9.5e-13 Score=138.83 Aligned_cols=431 Identities=13% Similarity=0.078 Sum_probs=309.5
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCC------cchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcch
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN------LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t 141 (655)
.+|.+.|.|-+.|-.-| ++..+..+...+...+ ..+|--+-++|-..|++++|...|.+. .. ..||.++
T Consensus 268 ~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s-~k--~~~d~~~ 342 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES-LK--ADNDNFV 342 (1018)
T ss_pred CCcHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH-Hc--cCCCCcc
Confidence 47778888888888888 8888777766654322 234666778888889999998888776 32 3455544
Q ss_pred HH--HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---CeeHHHHHH
Q 035659 142 FP--FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG----DLAMAYCVFVMIGKK---DVVSWNSMI 212 (655)
Q Consensus 142 ~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~~~~li 212 (655)
++ -+...+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |..+|-.+.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 43 45567788888999998888888874 555666667777777665 566777777766654 555676666
Q ss_pred HHHHhCCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC--CCCCH----
Q 035659 213 SGFVQGGFFEKAIELYREM----EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--VNPDE---- 282 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~--~~p~~---- 282 (655)
..|-+. +...++.+|... ...+-.+.....|.+.......|++. +|...|.+....-. ..+|.
T Consensus 422 ql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~------~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 422 QLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE------KALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH------HHHHHHHHHhhhhhhhcCccccccc
Confidence 666555 444447777654 45566688889999999999999977 99999988765410 22333
Q ss_pred -H-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 283 -F-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 283 -~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
. +--.+....-..++.+.|.++|..+++.. +.-+..|--|+.+-...+...+|...++.+.. .|+..|+-+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 2 22233444556679999999999998864 22233344444344445778888888888764 577788888888
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCcHHHHHHHHHHcchhcCccCCcchHHH
Q 035659 358 FAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH------------SGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 424 (655)
|.....+..|.+-|....+. ...+|..+..+|.+.|.. .+..++|+++|.++.+. -+.|...-+.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 88888888888877766543 233677777777665542 24567888888887752 2345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCC
Q 035659 425 MVDMLGRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 500 (655)
+.-.++..|++.+|..+|.+.. ......+|-.+...|...|++..|+++|+..++.. .+++.....|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8888999999999999998872 22355789999999999999999999999998864 4566788889999999999
Q ss_pred chhHHHHHHHHHhC
Q 035659 501 WDNVSELRKHMRVS 514 (655)
Q Consensus 501 ~~~a~~~~~~m~~~ 514 (655)
|.+|.+........
T Consensus 732 ~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 732 LQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887766553
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.8e-11 Score=128.01 Aligned_cols=460 Identities=12% Similarity=0.063 Sum_probs=321.3
Q ss_pred HHHHHHHhcCcc--hH---HHHHHHHHHh--CCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHH
Q 035659 41 VFSLIKQCKNIK--QL---KQIHTQMLRT--GLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113 (655)
Q Consensus 41 ~~~ll~~~~~~~--~~---~~~~~~~~~~--g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~ 113 (655)
+..+.+||.... +. -.++..++.. ...||+.+.-. ..+.++| +.+.|+..|.+..+-|+..-++++...
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~--~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLG--MSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhcc--chhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 344556665544 22 3444443332 44566655433 3456777 999999999998876655555554321
Q ss_pred H------hCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHH
Q 035659 114 S------SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD--LFISNSLIHFYA 185 (655)
Q Consensus 114 ~------~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~ 185 (655)
. ....+..+++++.......+ -|+...+.|-+-+.-.|+.+.+..+...++....... ...|--+..+|-
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 22345667777776633332 3666778888888899999999999998887652222 234667889999
Q ss_pred hcCCHHHHHHHHhhcCC--C-C-eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC
Q 035659 186 ICGDLAMAYCVFVMIGK--K-D-VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 261 (655)
..|++++|...|.+... + + +..+--+...|.+.|+.+.+...|+...+.. +-+..|...+...|...+.-. ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~--~~ 395 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQ--EK 395 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhh--HH
Confidence 99999999999977654 2 3 4556678899999999999999999988752 334567777777777664111 01
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----HcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK----KQGIKLNCYLTTSLIDMYTKCGNLDKAL 337 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (655)
.++|..++.+.... .+.|...|..+...+-. ++.......+..+. ..+-.+-+.+.|.+...+...|++++|.
T Consensus 396 ~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHhc--ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 34777777777654 35566677766666544 44444466665554 4555678889999999999999999999
Q ss_pred HHHhhcCCC-------Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 035659 338 EVFHTVKSR-------DV------FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 338 ~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 403 (655)
..|+..... |. .+--.+...+-..++.+.|.+.|+..... .|+.+ .|..++......+...+|.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHH
Confidence 999876532 22 12333455566678899999999999884 46544 3444443334457888999
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHH----hCCCCCChhHHHHHHHHHH------------hcCCH
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE----KMPIVPGASVWGALLGACK------------IHENV 467 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~----~m~~~p~~~~~~~ll~~~~------------~~g~~ 467 (655)
..++.+.. ....++..++.+.+.+.+...+..|.+-|+ +....+|..+.-+|.+.|. ..+..
T Consensus 551 ~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 551 LLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99988876 455666778788888888888888877444 4334467777777777553 23457
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+.|++.|.++++.+|.|..+-+-++.+++..|+|.+|..+|.++++...
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 8899999999999999988888899999999999999999999998765
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.2e-12 Score=126.32 Aligned_cols=382 Identities=14% Similarity=0.107 Sum_probs=261.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC------------C
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED------------D 173 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~ 173 (655)
.|.+--.+.+.|.++.|+..|+..+.. .||-.+-..|+-.+...|+-+..++.|..|+.....+ +
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 344445678899999999999887333 4777766666666777889999999999988754322 2
Q ss_pred hhHHHHHH-----HHHHhcCC--HHHHHHHHhhc----CCCCee---HH----------H--------HHHHHHHhCCCh
Q 035659 174 LFISNSLI-----HFYAICGD--LAMAYCVFVMI----GKKDVV---SW----------N--------SMISGFVQGGFF 221 (655)
Q Consensus 174 ~~~~~~li-----~~~~~~g~--~~~A~~~f~~~----~~~~~~---~~----------~--------~li~~~~~~g~~ 221 (655)
....|--| .-.-+.+. -+++.-.--++ ..||.. -| . .-..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 11111111 11221111122 222211 01 0 112347889999
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHH
Q 035659 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a 301 (655)
+.|+++++-+....-+.-...-+.|...+.-.|.-+ +.+|..+-+...... .-|....+.-.+.....|++++|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~----~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD----FADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc----hhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHH
Confidence 999999988876644333333333332222222211 336666555554332 22333333333445567899999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
.+.|.+.+...-.-....|| +.-.+-+.|++++|++.|-.+. ..++...-.+...|-...+..+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99999998865333334444 4445778899999999998765 357777788888999999999999999887763
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
++.|+..+.-|...|-+.|+-.+|.+.+-.--. -+..+.++...|..-|....-+++|+.+|++. -++|+.+-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 445677778888889999999999987765432 34456888888988999999999999999997 578999999999
Q ss_pred HHHH-HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 458 LGAC-KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 458 l~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
+..| ++.|++..|..+++.....-|.+......|..++...|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8765 678999999999999999999999999999998888774
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.5e-11 Score=120.41 Aligned_cols=385 Identities=15% Similarity=0.094 Sum_probs=261.3
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhhhcCCCCCC-cchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 035659 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYA 185 (655)
Q Consensus 108 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 185 (655)
..-+-|-++|.+++|++.|.+.+ . ..|| +..|...-.+|...|+|+.+.+--...++.. |+ +..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI-~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI-E--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH-h--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 33455678899999999999883 3 4678 5666666677788899999888888777664 44 456666777888
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHH---------HHHC--CCCCCHhhHHHHHHHHhccC
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE---------MEME--NVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~ 254 (655)
..|++++|+.= +|-..+..+|..+.-.--+.+++++ |.+. .+.|+.....+....+-..-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88888887642 2223333333333222223333322 1111 23455444444433332211
Q ss_pred cc---ccCCC-------------------hHHHHHHHHHHHHCCCCCCCHH---------HHHHHHHH--HhccCCHHHH
Q 035659 255 DL---EFGRW-------------------PNEALSIFHELQLSKNVNPDEF---------TFVSVLSA--CAQLGAMDIG 301 (655)
Q Consensus 255 ~~---~~~~~-------------------~~~A~~l~~~m~~~~~~~p~~~---------t~~~ll~~--~~~~g~~~~a 301 (655)
.. ..+.. +.+|...+.+-.......++.- .-..++.+ +.-.|+.-.+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 00 00000 2223322222211110111111 11111111 2345788889
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
.+-++..++... .+...|--+..+|....+.++..+.|+.... .|..+|..-...+.-.+++++|..=|++.+.
T Consensus 346 ~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~-- 422 (606)
T KOG0547|consen 346 QEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS-- 422 (606)
T ss_pred hhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999999988753 2333477788889999999999999998764 4667888888888888999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------
Q 035659 379 VKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG------ 450 (655)
Q Consensus 379 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~------ 450 (655)
+.| +...|..+..+..+.+.++++...|++..++ +...++.|+.....+...+++++|.+.|+.. .++|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 455 4567777877888999999999999999874 4555789999999999999999999999885 34443
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 451 ---ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 451 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
+.+-..++..-.+ +++..|+.+++++++++|....+|..|+..-...|+.++|+++|++-.
T Consensus 501 ~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445544444 899999999999999999999999999999999999999999998754
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.2e-11 Score=116.06 Aligned_cols=339 Identities=15% Similarity=0.097 Sum_probs=234.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (655)
+.+..++..+|.+.+|-...+.|.+++++-... +..+||.+|.+-.-. .-.+++.+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 556778899999999999999999999877653 556778877654332 226788999999999999999999
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHH----cCCCC----ch
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI-GVQIHAKMKK----QGIKL----NC 317 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~ 317 (655)
++..++.|+++.++. .|++++.+|.+-| +.|...+|..+|..+++.++..+ +..+...+.. ..++| |.
T Consensus 280 L~c~akfg~F~~ar~--aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK--AALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHhcchHHHHH--HHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999998876654 7888899999888 99999999999998888877644 4444444433 22222 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSR-----------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
..+..-++.+....+.+-|.++-.-+... ...-|..+....++....+.-+.+|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 45666677777888888888876655432 1234666778888888899999999999988788999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC---------CHHH-----HHHHHH-------hC
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG---------LLDE-----AVEFIE-------KM 445 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g---------~~~~-----A~~~~~-------~m 445 (655)
..+++|..-.|.++-.-+++..++. +|...+...-.-+...+++.. ++.. |..+++ +|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888888888888877765 354444333333444444433 1111 111111 11
Q ss_pred -CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCCcc--hHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 446 -PIVPGASVWGALLGACKIHENVELAEYACSHLLELE---PENHG--ALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 446 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
...-.....+..+-.+.+.|..++|-+++..+.+.. |..+. +..-+.+.-........|..+++.|...+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 122234455666666778888999988888886543 33322 2223444444556677788888888665543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=1.9e-11 Score=128.42 Aligned_cols=315 Identities=16% Similarity=0.145 Sum_probs=181.7
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCCeeHHHHHHHHHHhCCChhHHHHHHH
Q 035659 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI---GKKDVVSWNSMISGFVQGGFFEKAIELYR 229 (655)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (655)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 334445555555555555555555444222 22344445555555555555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 035659 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309 (655)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 309 (655)
+.++.. +++...+---...|-+.|+...|..-+.++.
T Consensus 232 rAI~~~-------------------------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 232 RAIQAN-------------------------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHhcC-------------------------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 554432 2232333333333444444444444444444
Q ss_pred HcCCCCchh----hHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--
Q 035659 310 KQGIKLNCY----LTTSLIDMYTKCGNLDKALEVFHTVKS--R---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-- 378 (655)
Q Consensus 310 ~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 378 (655)
....+.|.. ..-..+..|...++-+.|.+.++.... . +...++.++..|.....++.|......+....
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 432111111 111123333344444555555444432 1 23345555555555555555555555554411
Q ss_pred -------------------------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC--ccCCcchHHHHHHHHHh
Q 035659 379 -------------------------VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG--VVPGVKHYTCMVDMLGR 431 (655)
Q Consensus 379 -------------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~~~ 431 (655)
+.++...+ .+.-++.+....+....+.....+. . ..-+...|.-+.++|.+
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~ 426 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTN 426 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHh
Confidence 22222221 1222334444444444344433332 4 33357789999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHH
Q 035659 432 AGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 432 ~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (655)
.|++.+|+.+|..+ +...+..+|--+..+|...|.+++|.+.+++++...|.+..+-..|+.+|.+.|+.++|.+++
T Consensus 427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 99999999999988 223357799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 035659 509 KHMRV 513 (655)
Q Consensus 509 ~~m~~ 513 (655)
..|..
T Consensus 507 ~~~~~ 511 (895)
T KOG2076|consen 507 EQIIN 511 (895)
T ss_pred hcccC
Confidence 88763
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=2.6e-09 Score=108.46 Aligned_cols=452 Identities=12% Similarity=0.032 Sum_probs=253.1
Q ss_pred hHHHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHh
Q 035659 53 QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 129 (655)
+.+-++...++. .+.+.. |.-+|++.. -++.|.+++.... ..+...|-+-...=-.+|..+....+..+-
T Consensus 394 darilL~rAvec-cp~s~d----LwlAlarLe--tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 394 DARILLERAVEC-CPQSMD----LWLALARLE--TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHh-ccchHH----HHHHHHHHH--HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 335555555543 122333 334556666 7888888887654 346667766655555677777666665442
Q ss_pred h---hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 035659 130 V---YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD--LFISNSLIHFYAICGDLAMAYCVFVMIGK-- 202 (655)
Q Consensus 130 ~---~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~-- 202 (655)
+ +..|+..+...|-.=..+|-..|..-.+..+....+..|++.. -.+|+.-.+.+.+.+.++-|+.+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 1 4567777777776666667667777777777776666665332 34566666666666666666666655443
Q ss_pred -CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 203 -KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 203 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
.+...|...+..--..|..++-..+|++.... ++-....|......+-..|++. .|..++.+..+.. +-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~------~ar~il~~af~~~--pns 617 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVP------AARVILDQAFEAN--PNS 617 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcH------HHHHHHHHHHHhC--CCc
Confidence 23344444444444445555555555554443 1112222333333333344433 4444444443321 122
Q ss_pred HHHHHHHHHHHhccCC---------------------------------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGA---------------------------------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~---------------------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
...+.+.+..-..... .++|.+++++.++. ++.-...|-.+.+.+-
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 3344444444444444 44555554444443 2222334444444444
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
+.++++.|++.|..-.+ | .+..|-.+...=-+.|....|..+|++.+..+. -|...|...|..-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHH
Confidence 44555555444443332 1 233444444444444455555555555444321 2444455555555555555555555
Q ss_pred HHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 406 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+..+ ....+...|..-|.+..+.++-..+.+.+++. +.|+.+.-++...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 554443 22333444444444444444444444444443 45677777788888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEEC
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~ 528 (655)
.+|..+...+...|.-++-.++++..... .|.-|..|.-+.
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999998877653 355566666443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.1e-13 Score=136.88 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=114.3
Q ss_pred HHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 035659 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV-SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323 (655)
Q Consensus 245 ~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 323 (655)
.+...+.+.|+++ +|++++++..... .+|+...|- .+...+-..++.+.|.+.++++...+ +.++..+..+
T Consensus 13 ~~A~~~~~~~~~~------~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l 84 (280)
T PF13429_consen 13 RLARLLYQRGDYE------KALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc------ccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 4466777788866 9999996554332 245555544 44455667899999999999999876 3366677788
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
+.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred ccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 877 789999999999887643 466778888999999999999999999987542 3456777888888899999999
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+|...++...+. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...++++
T Consensus 164 ~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 164 KALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999864 665 778889999999999999988888765 12456778999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..|+|+.....++.++...|+.++|.++++...+
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999876543
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=2.2e-10 Score=118.70 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 459 (655)
+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++. ...|+ +..+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3334444444445555555555554444321 222211 1111112234445554444443 22222 333444455
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555555555555555532 3344555555555555555555543
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.43 E-value=1.6e-09 Score=114.24 Aligned_cols=347 Identities=15% Similarity=0.168 Sum_probs=259.2
Q ss_pred hhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCc
Q 035659 80 CALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 80 y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~ 155 (655)
|++ | ++++|.+++.++.+ .+...|-+|-..|-+.|+.++++..+-.. ....| |..-|..+-.-..+.|.+
T Consensus 150 far-g--~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA---AHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 150 FAR-G--DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA---AHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHh-C--CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH---HhcCCCChHHHHHHHHHHHhcccH
Confidence 455 7 99999999999864 46678999999999999999999887654 22344 566777888888899999
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCe-e-------HHHHHHHHHHhCCChhHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV-V-------SWNSMISGFVQGGFFEKAIEL 227 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~ 227 (655)
++|.-.+.++++.. +++....---+.+|-+.|+...|..-|.++-+.+. + .--.++..|...++-+.|++.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987 56666666678899999999999999988866332 1 122346667778888999998
Q ss_pred HHHHHHC-CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC--------------------------CCCC
Q 035659 228 YREMEME-NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK--------------------------NVNP 280 (655)
Q Consensus 228 ~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~--------------------------~~~p 280 (655)
++..... +-..+..+++.++..+.+...++ .|......+.... ++.+
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d------~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSD------KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHH------HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 8887763 23445667777777777777755 7777777766511 0122
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTM 354 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l 354 (655)
+... --+.-++.+....+....+.....+..+ .-++..|.-+.++|...|++.+|.++|..+... +...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 1223344566777777777777777764 446778899999999999999999999999753 67799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchh-------cCccCCcchHHHHH
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPV-------YGVVPGVKHYTCMV 426 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~~p~~~~y~~li 426 (655)
..+|...|..++|++.|++... ..|+. ..-.+|...+.+.|+.++|.+.+..+..- .+..|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998 45654 33445666688999999999999986421 13445555566677
Q ss_pred HHHHhcCCHHHHHHHH
Q 035659 427 DMLGRAGLLDEAVEFI 442 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~ 442 (655)
+.|...|+.++=+...
T Consensus 534 d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 534 DILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 8888999888754433
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=3.3e-10 Score=118.08 Aligned_cols=281 Identities=12% Similarity=-0.007 Sum_probs=150.4
Q ss_pred cCCHHHHHHHHhhcCC--CCe-eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCccccCCC
Q 035659 187 CGDLAMAYCVFVMIGK--KDV-VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV--TMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~~~~ 261 (655)
.|+++.|++.+.+..+ |+. ..+-.......+.|++++|.+.|.+..+.. |+.. ........+...|+++
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~---- 170 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH---- 170 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH----
Confidence 5666666666655543 221 222333445555666666666666665432 3322 2222345555566644
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhh-------HHHHHHHHHhcCCHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL-------TTSLIDMYTKCGNLD 334 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~~~g~~~ 334 (655)
+|...++.+.+.. +-+...+..+..++...|+++.+.+++..+.+.+....... +..+++.-......+
T Consensus 171 --~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 --AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred --HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 6666666666543 33445566666667777777777777777776653322211 111111111222233
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHH
Q 035659 335 KALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF---TNVLCACSHSGLVDEGRMFFNQ 408 (655)
Q Consensus 335 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~ 408 (655)
...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 44444554443 36667777777777777777777777777764 3333311 1111112334556666666666
Q ss_pred cchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK---MPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 409 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
..+...-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554322222113444566666666666666666662 24456666666666666666666666666666544
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=1.3e-12 Score=129.28 Aligned_cols=252 Identities=16% Similarity=0.134 Sum_probs=81.6
Q ss_pred HHHccCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhH
Q 035659 148 AAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 223 (655)
.+.+.|+++.|.+++....... .+.|...|..+.......++.+.|...++++... +...+..++.. ...+++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 3344445555555543322221 1223333444444444445555555555544432 22233444444 45555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 035659 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303 (655)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 303 (655)
|.+++.+..+.. ++...+..++..+...++++ ++.+++++.......+.+...|..+...+.+.|+.++|.+
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYD------EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------H-HHHTT-HH------HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHH------HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555554443321 33344444555555555543 5555555544333234555566666666677777777777
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 380 (655)
.++++++.. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..... +
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 777777654 3346666677777777777776655555443 2455666777777777777777777777776642 2
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 381 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
.|......+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666667777777777777777766654
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=5.6e-11 Score=121.24 Aligned_cols=278 Identities=12% Similarity=0.064 Sum_probs=196.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHhccCCH
Q 035659 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP-DEFTFVSVLSACAQLGAM 298 (655)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~g~~ 298 (655)
+..+|+.+|...... +.-+......+..+|...++++ +|.++|+.+.+...... +..+|++.+--+-+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~------~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYD------QAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---- 402 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhccccccchhHHHHHHHHHHh----
Confidence 356677777664333 2333345556666777777755 77777777765432222 35566666644322
Q ss_pred HHHHHHH-HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 035659 299 DIGVQIH-AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRM 374 (655)
Q Consensus 299 ~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (655)
+-+...+ +.+++.. +..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..
T Consensus 403 ~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 1122222 2223322 456788999999999999999999999888764 4567777777788888899999999887
Q ss_pred HHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 035659 375 QEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-G 450 (655)
Q Consensus 375 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 450 (655)
+. +.| +...|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+-+.|+.|+|++++++. -..| |
T Consensus 482 l~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 482 LG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 65 333 23456667778899999999999999887 45664 556677778888999999999999986 2223 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..----+..+...+++++|+..++++.+.-|++...|..++.+|.+.|+.+.|..-|.-+.+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4444445566677889999999999999999999999999999999999999998887776653
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.8e-10 Score=112.86 Aligned_cols=427 Identities=13% Similarity=0.034 Sum_probs=272.3
Q ss_pred CCCChhhhhHHHHhhhcCCCCChHHHHHHhhc--CCCCCcchHHHHHHHHHhCCCcHHHHHHHH----HhhhcC------
Q 035659 66 LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ--IPQPNLYTWNTLIRAYSSSAEPIQSFMIFL----QLVYNS------ 133 (655)
Q Consensus 66 ~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~~------ 133 (655)
+..|+...--+..+|.-.| +.+.|..+... +.+.|..+.......+.+..++++|+.++. .+..-.
T Consensus 45 l~~dp~d~~~~aq~l~~~~--~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGR--QYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred ccCChHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 3344444445666777677 88888777654 567888888888999999999999999987 220000
Q ss_pred --CCCCCcch----HHHHHHH-------HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 134 --PYFPNEFT----FPFVIKA-------AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200 (655)
Q Consensus 134 --~~~pd~~t----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 200 (655)
-+.+|..- -+.-.+. +....+.++|+..+.+++.. |+.-+.++..+-.. .+-.+.+.|+.+
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELL 196 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHH
Confidence 00111111 1111111 22223344444444444322 22222222221111 111121122222
Q ss_pred CCCCeeHH----HHHHHHHHhC----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHH
Q 035659 201 GKKDVVSW----NSMISGFVQG----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272 (655)
Q Consensus 201 ~~~~~~~~----~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m 272 (655)
...|.... ...+..+.+. ..-++....-.+-.-.|..-+......-..-|...+++. +.++++...
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~------~c~kit~~l 270 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFK------ECLKITEEL 270 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHH------HHHHHhHHH
Confidence 21111110 0000000000 000000000000001122334444444445555566654 899999988
Q ss_pred HHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hh
Q 035659 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VF 349 (655)
Q Consensus 273 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 349 (655)
.+.. +++...+..-|..+...|+..+-..+=..+++. .|..+.+|-++.--|.-.|+.++|++.|.+...-| ..
T Consensus 271 le~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 271 LEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 8764 555556666677888888877777777777775 36678899999999999999999999999876544 46
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDM 428 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~ 428 (655)
.|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.++|.+.. ++.| |+.+++-+.-+
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 8999999999999999999999877653 12222334444556888999999999999987 5566 46677777777
Q ss_pred HHhcCCHHHHHHHHHhC--------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 429 LGRAGLLDEAVEFIEKM--------PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
....+.+.+|..+|+.. +..+ -..+|+.|..+|++.+.+++|+..+++++.+.|.+..+|..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 77888999999999875 1111 34578899999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh
Q 035659 500 KWDNVSELRKHMRV 513 (655)
Q Consensus 500 ~~~~a~~~~~~m~~ 513 (655)
+++.|.+.|.+..-
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999987544
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=4.5e-10 Score=116.45 Aligned_cols=128 Identities=13% Similarity=-0.023 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3444445555555555555555555555542 233311 1222333446666666666666543 122344555666
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
..+.+.|++++|.+.|++. ...|+...+..+...+...|+.++|..++++.+.+
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666666666664 45566666666666666666666666666666554
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.7e-11 Score=122.55 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--IKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
.++|+.+|...... +.-+......+..+|...+++++++.+|+.+.+.. .--+..+|.+.+--+-+.=.+..--+-
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45999999995543 34445677788899999999999999999998853 123566777776554433222222222
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC
Q 035659 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418 (655)
Q Consensus 340 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 418 (655)
+-.+....+.+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 2223344678999999999999999999999999998 566 67888888777888899999999999876 345
Q ss_pred cchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTC---MVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
+.+|++ |.-.|.+.++++.|+-.|++. .+.|. .++...+...+.+.|+.++|+++++++..++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 556665 556799999999999999997 67775 5666777788999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhC
Q 035659 494 IYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++...+++++|.+.++++++-
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999883
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.7e-10 Score=111.74 Aligned_cols=401 Identities=14% Similarity=0.121 Sum_probs=263.6
Q ss_pred hHHHH---HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH-HHHHHHHccCCchHHHHHHHHHHHhCCCCC----hhH
Q 035659 105 TWNTL---IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP-FVIKAAARLVQFRVGQAIHGMVIKSSFEDD----LFI 176 (655)
Q Consensus 105 ~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~ 176 (655)
||+.| ..-|.-+....+|+..|+-. .+...-||.-.+. .+-+.+.+.+.+..|.+.++..+..-...+ +.+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeii-vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEII-VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhh-hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 45444 44566667788999999887 5555666655443 233456777888899999998877532222 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--------HHH
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM--------VAV 246 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~l 246 (655)
.+.+.-.+.+.|.+++|..-|+...+ ||..+--.|+-.+.--|+-++..+.|.+|..-...||..-| ..|
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 55556678889999999999998755 77765445555556678899999999999865433332211 122
Q ss_pred HH---------HHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH-------------HH--------HHHHHHhccC
Q 035659 247 LS---------ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-------------FV--------SVLSACAQLG 296 (655)
Q Consensus 247 l~---------~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-------------~~--------~ll~~~~~~g 296 (655)
+. -..+.++.+ .++++-.--++..-- +.||-.. +. .-..-+.+.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~----aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKAD----AEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhh----HHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 22 222222211 122222222222111 2232110 00 0112356778
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH------------------------------------HhcCCHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY------------------------------------TKCGNLDKALEVF 340 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~------------------------------------~~~g~~~~A~~~~ 340 (655)
+++.|.+++.-+.+..-+.-....+.|-..+ ...|++++|.+.+
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 8888888888776644322222222221111 1347889999999
Q ss_pred hhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 341 HTVKSRDVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 341 ~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++.+... -+..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 888877765444433 3466789999999999888653 334677777888889999999999999988864 3455
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
|+.+.+-|.+.|-+.|+-..|.+..-.- . +.-+..+..-|..-|....-.+.++..|+++--+.|+...--..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 6889999999999999999998875443 2 2335666666777777788889999999999888886544444566777
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
.+.|++..|.++++.+.++
T Consensus 671 rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 8899999999999988654
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=9.2e-09 Score=100.73 Aligned_cols=354 Identities=13% Similarity=0.067 Sum_probs=218.3
Q ss_pred HccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChhHHHHH
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFEKAIEL 227 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 227 (655)
.+...+..|+.+++.++..- +.-...|--.+.|=-..|++..|+++|++-.+ |+..+|++.|..=.+-+..+.|..+
T Consensus 118 mknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555555555555442 22222344444444455566666666654432 5555666666655555556666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 228 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
|++.+-. .|+..+|.--...-.+.|... -|..+|......-| -.-+...|.+...-=.++..++.|.-+|.
T Consensus 197 YerfV~~--HP~v~~wikyarFE~k~g~~~------~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 197 YERFVLV--HPKVSNWIKYARFEEKHGNVA------LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred HHHHhee--cccHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555442 355555555555555555544 44445544433210 01122234444433445667888888888
Q ss_pred HHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHH--------hhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 307 KMKKQGIKLN--CYLTTSLIDMYTKCGNLDKALEVF--------HTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 307 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
..++.= +.+ ...|..+...--+-|+......+. +.+.+. |-.+|--.+..-...|+.+...++|++
T Consensus 269 yAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 269 YALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 887752 222 445555555555566654443332 222222 556777777777778899999999988
Q ss_pred HHHcCCCCCH-------HHHHHHHHH---HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH----hcCCHHHHH
Q 035659 374 MQEAKVKPNA-------VTFTNVLCA---CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG----RAGLLDEAV 439 (655)
Q Consensus 374 m~~~g~~p~~-------~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~----~~g~~~~A~ 439 (655)
.+.. ++|-. ..|.-+=-+ -....+++.+.++|+...+ -++....++.-+--+|+ |+.++..|.
T Consensus 348 AIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 348 AIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 8864 55521 112111112 2346788888888888774 23334556655555554 678888898
Q ss_pred HHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 440 EFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 440 ~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+++... +.-|..-++...|..-.+.++++....++++.++-+|.|..++...+..-...|+++.|..+|....+...
T Consensus 425 kiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 425 KILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 888765 77788888888888888888999999999999999999888888888888888999999999988877654
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1.6e-09 Score=113.54 Aligned_cols=467 Identities=12% Similarity=0.059 Sum_probs=274.9
Q ss_pred ccCCCCCCCcccHHHHHHHhcCcchH--HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchH
Q 035659 29 TVNNGHQHHPHPVFSLIKQCKNIKQL--KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106 (655)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~ 106 (655)
....|+.|+..||.+++..++..++. ..++..|.-..++....+++.++......+ +.+.|. +|...+|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~An--d~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEAN--DAENPK-------EPLADTY 86 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccc--cccCCC-------CCchhHH
Confidence 45568899999999999999988887 448888887777778888889988877777 666554 6777889
Q ss_pred HHHHHHHHhCCCcHHHHHHHHH-hh------hcCCCCCCcchHHHHHHHH--------------HccCCchHHHHHHHHH
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQ-LV------YNSPYFPNEFTFPFVIKAA--------------ARLVQFRVGQAIHGMV 165 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~-m~------~~~~~~pd~~t~~~ll~~~--------------~~~~~~~~a~~~~~~~ 165 (655)
+.|+.+|.+.|+... ++..++ |. ...|+..-..-|...+.+| .-.|-++.+.+++..+
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998654 222222 10 1122211111111111211 1112222222222222
Q ss_pred HHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 166 IKSSFEDDLFISNSLIHFYAI-CGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 166 ~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
...... .++.. .+.-... ...+++-...-....+ ++..+|.+++..-.-+|+.+.|..++.+|.+.|++.+.+-|
T Consensus 166 Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 166 PVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred Cccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 111100 00000 1111111 1223333333333334 78888999999999999999999999999999999888888
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHH-----------HHHHHHH--
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ-----------IHAKMKK-- 310 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~-----------~~~~~~~-- 310 (655)
..|+-+ .++.. -+..+++.|+..| +.|+..|+..-+-.+.+.|....+.+ ++..+..
T Consensus 243 wpLl~g---~~~~q------~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 243 WPLLLG---INAAQ------VFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred hhhhhc---Cccch------HHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 877766 44433 6677777787777 99999988877766666443222111 1111110
Q ss_pred -----------------------cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH
Q 035659 311 -----------------------QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-------DVFVWSTMIAGFAM 360 (655)
Q Consensus 311 -----------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 360 (655)
.|+.....+|...+.. ...|.-+..+++-..+..+ ++..|..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 1222222333322222 1246556666665555432 33344333333322
Q ss_pred c----------------------CChHHHHHHHHHHHHc----------------CCCC-------CHHHHHHHHHHHHc
Q 035659 361 Y----------------------GCGREALDLFSRMQEA----------------KVKP-------NAVTFTNVLCACSH 395 (655)
Q Consensus 361 ~----------------------g~~~~A~~~~~~m~~~----------------g~~p-------~~~t~~~ll~a~~~ 395 (655)
. ....+..++....+.. -+.| -...-+.++..|+.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 1 1111112221111000 0000 01122344555555
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCCHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-----IVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
.-+..+++..-+..... - -+ ..|..||+.+....++++|..+.++.. +.-|..-+..+.+...+++....+
T Consensus 472 e~n~lK~l~~~ekye~~-l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDL-L-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHH-H-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 55555555443333221 1 12 578999999999999999999999883 233555677888889999999999
Q ss_pred HHHHHHHhccC---CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 471 EYACSHLLELE---PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 471 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
..+++.+.+.- |.......-+.+.-+..|+.+...++++-+...|+.. .+.-|
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 99998887732 4344566778888899999999999999999998866 34444
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.3e-09 Score=104.73 Aligned_cols=328 Identities=13% Similarity=0.076 Sum_probs=223.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--HHHH
Q 035659 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM--VAVL 247 (655)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll 247 (655)
...|.+.+-...-.+-+.|....|...|......-+..|.+.+.-..-.-+.+.+..+.. |...|..-+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 355555544445556677788888888877666544445444433322222222222111 111111111 1123
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhhHHHHHH
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLID 325 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~ 325 (655)
.++......+ +++.-.......| ++-+...-+-...+.....++++|+.+|+++.+... --|..+|+.++-
T Consensus 235 ~a~~el~q~~------e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 235 KAYQELHQHE------EALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHH------HHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 3444444433 7777677776665 554444444444455677899999999999988741 125667776653
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHH
Q 035659 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRM 404 (655)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 404 (655)
.-..+.++.---...-.+.+--+.|...+.+-|+-.++.++|...|++..+. .|. ...|+.+..-|....+...|.+
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH
Confidence 3222222222112222233334567777788888899999999999999884 444 4566667778999999999999
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
-++.+++. .+.|-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+.
T Consensus 386 sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99998852 2346788999999999999999999999997 5666 578999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..+|..|+++|.+.++.++|...+++-.+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7889999999999999999999999987665
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=5.9e-08 Score=98.84 Aligned_cols=441 Identities=10% Similarity=0.026 Sum_probs=335.3
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 131 (655)
+++....++. ++.++.+|-..+. .. ..++|+.++.+..+ .....|. +|++..-++.|..+++..
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVe----lE--~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNka-- 432 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVE----LE--EPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKA-- 432 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHh----cc--ChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHH--
Confidence 5555555443 3456777777765 33 67789999988764 2334444 566667788999999988
Q ss_pred cCCCCCCcchHHHHHHHHHccCCchHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----
Q 035659 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV----IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK----- 202 (655)
Q Consensus 132 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----- 202 (655)
+..++-+...|.+....=-..|+.+....+...- ...|+..+..-|-.=...+-+.|..-.+..+...+..
T Consensus 433 Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 433 REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 4457778888888777777888998888887654 4568888888888777888888888887777765542
Q ss_pred -CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 203 -KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 203 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
.-..+|+.-...|.+.+.++-|..+|...++. .+-+...|......--.-|..+ +-..+|++.... ++-.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E------sl~Allqkav~~--~pka 583 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE------SLEALLQKAVEQ--CPKA 583 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH------HHHHHHHHHHHh--CCcc
Confidence 23468999999999999999999999988764 2334556666665555567655 778888888765 4555
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFA 359 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 359 (655)
...|.....-.-..|++..|+.++..+.+.. +.+..+|-+-+........++.|+.+|.+... +....|.--+...-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 6666666677778899999999999999875 44788999999999999999999999998865 45667777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 438 (655)
-.+..++|++++++..+. -|+. ..|..+...+.+.++++.|...|..-.+ ...-.+-.|-.|.+.=-+.|.+-.|
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhH
Confidence 789999999999998884 5664 5666777789999999999999887664 2333466788888888899999999
Q ss_pred HHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------------------------------cc
Q 035659 439 VEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN------------------------------HG 486 (655)
Q Consensus 439 ~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------------------------------~~ 486 (655)
..++++. .-..|...|-..+..-.++|+.+.|..+..++++--|.+ +.
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 9999987 333467899999999999999999999999998855543 44
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
....++..+....+++.|.+-|.+....+ ++-|-.|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 55566777777888888888887776644 3344444
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.4e-09 Score=102.23 Aligned_cols=358 Identities=12% Similarity=0.104 Sum_probs=257.2
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHH-HHHHHH
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW-NSMISG 214 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~ 214 (655)
.-|.+-+-......-+.|....|...+...+..- +..|.+-+....-..+.+.+..+....+..+...- --+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3455444444455667778888888887776542 23444444444444555665555544444322111 124455
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHh
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP-DEFTFVSVLSACA 293 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~ 293 (655)
+-...+.++++.-.+.....|+..+...-+....+.-...+++ +|+.+|+++.+...... |..+|+.++-+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD------~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFD------QAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHH------HHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 6666688888888888888887766655555555555667755 99999999998754433 5678888875543
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
....+. .+.+-+-.=-+-.+.|...+.+-|+-.++.++|...|++..+- -...|+.|..-|....+...|++-
T Consensus 311 ~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 322221 1111111101234567888888999999999999999998764 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM--PI 447 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~ 447 (655)
++..++-. +-|...|-.|..+|.-.+...=|+-+|++..+ ++| |...|.+|.+.|.+.+++++|++.|.+. .-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999852 34888999999999999999999999999874 455 5889999999999999999999999987 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLEL-------EPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...+..|...+.+.++.++|.+.+++-++. +|....+..-|+.-+.+.+++++|...-...
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 235588999999999999999999999998873 3433445556888889999999998765443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=1.3e-09 Score=113.76 Aligned_cols=284 Identities=11% Similarity=0.011 Sum_probs=149.2
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcchH-HHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEFTF-PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
.|+++.|.+.+... ... .|+...+ -....+..+.|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~-~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKN-ADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHH-hhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666554 222 2332222 2223344455666666666666554431222223333455555566666666
Q ss_pred HHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHH
Q 035659 195 CVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271 (655)
Q Consensus 195 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~ 271 (655)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.++......-..++
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 66555543 2 33445555555666666666666655555554321111101000000
Q ss_pred HHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 035659 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG---IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-- 346 (655)
Q Consensus 272 m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 346 (655)
..+ ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 233 --------------~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 233 --------------IGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred --------------HHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 000 11111122222333333221 1135666666667777777777777777666542
Q ss_pred ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 347 DVFV---WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA---VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 347 ~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
|... ...........++.+.+++.+++..+. .|+. ....++...|.+.|++++|.++|+..... ...|+..
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~ 371 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAN 371 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHH
Confidence 2211 111112223345667777777777663 4443 34456777788888888888888853322 4578887
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.+..+...+.+.|+.++|.+++++
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888888888888888876
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=3.5e-10 Score=118.38 Aligned_cols=249 Identities=12% Similarity=0.079 Sum_probs=134.5
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 035659 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204 (655)
Q Consensus 125 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 204 (655)
++-.| +..|+.|+..||..+|.-|+..|+++.|- +|..|.-..++....+++.++......++.+.+. +|-
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44555 77788888888888888888888888777 8888777777777778888888877777776665 667
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCCHhhHHHH--------------HHHHhccCccccCCCh
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYRE-ME-------MENVKPDEVTMVAV--------------LSACAKKRDLEFGRWP 262 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~l--------------l~~~~~~~~~~~~~~~ 262 (655)
..+|+.|..+|.+.|+..- ++..++ |. ..|+..-..-+-.. +......|.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa----- 156 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA----- 156 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH-----
Confidence 7788888888888887654 222222 21 11211111111111 11111111111
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
.+++++..+.......|-.+ ++.-+... ..-.+++.+......-.++..++.++++.-.-.|+++.|..++.+
T Consensus 157 -qllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 157 -QLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred -HHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 33333333322111111111 12222221 122233333332211136666666666666666666666666666
Q ss_pred cCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 343 VKSRD----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 343 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
|++.. ..-|-.++-+ .+....+..+++-|.+.|+.|+..|+.-.+..|...|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66542 2222233333 55556666666666666666666666665555555433
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=7.3e-12 Score=87.09 Aligned_cols=50 Identities=38% Similarity=0.743 Sum_probs=48.5
Q ss_pred CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=7.3e-10 Score=106.32 Aligned_cols=198 Identities=15% Similarity=0.074 Sum_probs=161.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888889999999999999987653 346678888888999999999999999988753 235566777788
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+...|++++|.+.++.+............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222223456777888999999999999999886 3334 45678888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|...++++++..|.++..+..++..+...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999998887755
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=4.6e-09 Score=98.15 Aligned_cols=305 Identities=14% Similarity=0.157 Sum_probs=171.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccC
Q 035659 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLG 296 (655)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g 296 (655)
.+.++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+ .|+.+-+.+..+.+.+-+. ...-.+..-|...|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvD------RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVD------RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHH------HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 45555555555555421 122333444555555555544 5555555554332111111 12233444456667
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--------HHHHHHHHHHcCChHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV--------WSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 368 (655)
-+|.|+++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+-+... |--+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 7777777777776644 2333455566777777777777777766555433222 333334444556777777
Q ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 035659 369 DLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P 446 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~ 446 (655)
.++++..+.+ |+.+- -..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ .
T Consensus 201 ~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 201 ELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777643 33222 223444566777788888777777654 22222556667777778888888877777665 4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA--KTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
..++...-..+-..-....-.+.|...+.+-+...|.-...|..+-.-.. ..|++.+-...++.|....++..|.+..
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 44455555555555455555666777766666777744333333322222 3466888888888888777766665444
Q ss_pred EEECCEEEEE
Q 035659 525 IEVNGEIHKF 534 (655)
Q Consensus 525 ~~~~~~~~~f 534 (655)
..-+-..|.|
T Consensus 358 ~~CGF~a~~l 367 (389)
T COG2956 358 QNCGFTAHTL 367 (389)
T ss_pred cccCCcceee
Confidence 3333334444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=2.8e-08 Score=95.97 Aligned_cols=278 Identities=15% Similarity=0.057 Sum_probs=145.3
Q ss_pred cCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChH
Q 035659 187 CGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 263 (655)
.|++..|++...+-.+ .-+..|-.-+.+--+.|+.+.+-..+.+.-+.--.++...+.+........|+..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~------ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP------ 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch------
Confidence 4666666666655433 1223344444455556666666666666655433344444555555555566554
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCCHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-------YLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A 336 (655)
.|..-..++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-
T Consensus 171 aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 5666666655543 334455566666666666666666666666666643332 2344444444444444444
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc
Q 035659 337 LEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413 (655)
Q Consensus 337 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 413 (655)
...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..+-.+.+-++.+.-++..+.-.+..
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 445555542 24555555556666666666666666666655554441 11123444444444444444443332
Q ss_pred CccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 414 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+.+..++.+.|+.++|.++.++.+
T Consensus 325 ~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 325 PEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3333 34445555555555555555555543 444555555555555555555555555555444
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.6e-08 Score=94.64 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=166.0
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC---ChhHHHHHH
Q 035659 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED---DLFISNSLI 181 (655)
Q Consensus 105 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li 181 (655)
.|-.=++.+. +.++++|.++|-+| .+. -+-+..+--+|-+.+.+.|..+.|..+|+-+.++.--+ -......|.
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~-l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEM-LQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHH-Hhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444444444 46788999999999 331 11223334466677888899999999999888753111 123444566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCcccc
Q 035659 182 HFYAICGDLAMAYCVFVMIGKKD---VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 258 (655)
.-|.+.|-+|.|+.+|..+.+.. ..+...|+..|-+..++++|+++-+++...|-.+..+ -
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e------------ 178 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E------------ 178 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H------------
Confidence 77888888888888888776622 3355667778888888888887777666554332211 0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 035659 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338 (655)
Q Consensus 259 ~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (655)
. ...|.-+...+....+++.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+
T Consensus 179 ------I----------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 179 ------I----------------AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred ------H----------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHH
Confidence 0 1123333344444556677777777776654 3344455556677777777777777
Q ss_pred HHhhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 339 VFHTVKSRDV----FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 339 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
.++.+.+.|. .+...|..+|.+.|+.++....+.++.+....++ .-..+...-....-.+.|..++.+-...
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 7777766554 2455566677777777777777777766432222 2223333223333444554444443322
Q ss_pred ccCCcchHHHHHHHH
Q 035659 415 VVPGVKHYTCMVDML 429 (655)
Q Consensus 415 ~~p~~~~y~~li~~~ 429 (655)
+|+...+..+++.-
T Consensus 312 -~Pt~~gf~rl~~~~ 325 (389)
T COG2956 312 -KPTMRGFHRLMDYH 325 (389)
T ss_pred -CCcHHHHHHHHHhh
Confidence 56666666666543
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=3.6e-09 Score=109.33 Aligned_cols=243 Identities=17% Similarity=0.181 Sum_probs=173.1
Q ss_pred HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC-----CCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc--
Q 035659 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS-----KNVNPDEFTF-VSVLSACAQLGAMDIGVQIHAKMKKQ-- 311 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~-----~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-- 311 (655)
..|...+...|...|+++ +|..+++...+. |...|...+. +.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e------~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLE------KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 457777999999999977 999999887654 1124444433 33666778888888888888887652
Q ss_pred ---C--CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-H
Q 035659 312 ---G--IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-T 385 (655)
Q Consensus 312 ---g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 385 (655)
| .+.-..+++.|..+|.+.|++++|...++ .|++++++.... ..|... -
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~~~~-~~~~v~~~ 327 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKLLGA-SHPEVAAQ 327 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHhhcc-ChHHHHHH
Confidence 2 11224456666677888888888777654 556666652111 223332 3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PI--VPG 450 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~ 450 (655)
++.+...|+..+.+++|..+++...+.+. ..++ ..+|+.|...|...|++++|++++++. .. .+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 45566678888999999988887766543 2222 457899999999999999999999876 11 222
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CC---CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 451 -ASVWGALLGACKIHENVELAEYACSHLLEL----EP---ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 451 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...++.|...|.+.+++++|.++|.+.... +| +...+|..|+.+|...|++++|.++.+....
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456677888999999999999999887663 34 4456888999999999999999999887753
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.5e-11 Score=83.63 Aligned_cols=50 Identities=30% Similarity=0.544 Sum_probs=46.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=3.8e-07 Score=89.71 Aligned_cols=439 Identities=13% Similarity=0.085 Sum_probs=266.0
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC----CCCcchHHHHHHHHHhCCCcHHHHHHHHHhh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 130 (655)
+.+++..+.-. ..+..+|-..+.+=.++. ++..|+.+|++.. +.|. .|---+-.=-..|+...|.++|++.+
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emknk--~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKNK--QVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhhh--hHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44555544432 234556666666666666 6777777776542 2121 12222222222355555566665541
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-------- 202 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------- 202 (655)
. ..|+...|.+.++.=.+-..++.|+.+++..+-. .|++..|--....=-++|.+..|+.+|+...+
T Consensus 169 -~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 169 -E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred -c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 1 3455556666555555555555566555555433 35555555555555555555555555544332
Q ss_pred ----------------------------------CCeeHHHHHHHHHHhCCChhHHHHH--------HHHHHHCCCCCCH
Q 035659 203 ----------------------------------KDVVSWNSMISGFVQGGFFEKAIEL--------YREMEMENVKPDE 240 (655)
Q Consensus 203 ----------------------------------~~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~ 240 (655)
+....|..+...=-+-|+.....+. |+.++.. -+-|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCc
Confidence 1112222222222233332222211 1222222 13455
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHHHH
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-------TFVSVLSAC---AQLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~ 310 (655)
.+|--.++.-...|+.+ ...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++++..++
T Consensus 323 DsWfdylrL~e~~g~~~------~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKD------RIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hHHHHHHHHHHhcCCHH------HHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66767777777777755 888999998764 677321 222221122 356799999999999998
Q ss_pred cCCCCchhhHHHHHHHHH----hcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 035659 311 QGIKLNCYLTTSLIDMYT----KCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 384 (655)
. ++...+|+..+=-+|+ ++.++..|++++-.... |-.-++...|..=.+.+.++.+..++++.++.+ +-|..
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 4 5556777776666665 67899999999987653 566778888888889999999999999999964 23677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHH-
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACK- 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~- 462 (655)
+|......-...|+.+.|..+|..+.+...+..-...|-+.|+-=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8877777777889999999999999876444444556777777778899999999999987 33445667877664433
Q ss_pred ----hcC-----------CHHHHHHHHHHHhcc----CCCCc--chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 ----IHE-----------NVELAEYACSHLLEL----EPENH--GALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+.+ +...|..+|+++... +|... ...-...+.-...|...+...+-..|.+
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 567888899888763 23221 1222233334455666666666555543
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=2.2e-08 Score=96.63 Aligned_cols=278 Identities=11% Similarity=0.084 Sum_probs=208.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC
Q 035659 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~ 297 (655)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+ .+-.++.+..+.- -.++.....+........|+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~------~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDED------RANRYLAEAAELA-GDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHH------HHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCC
Confidence 799999999999877776444 344666667777788866 8888888887642 23445556666677888999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChHH
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV-----------FVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~ 366 (655)
...|..-...+.+.+ +-.+.+.....++|.+.|++.....++..+.+... .+|+.++.-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999998876 56678888999999999999999999999886432 467777766666555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH----HHHH
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA----VEFI 442 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A----~~~~ 442 (655)
-...++..-.. .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ ...++ ...+-++.+.- .+.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHH
Confidence 55566655433 4555666667778888999999999999888876 55555 11111 22344444433 3333
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 443 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...|. ++..+.+|...|.+++.+.+|...|+.+++..| +...|..++.++.+.|+..+|.+++++-..
T Consensus 322 ~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44454 447889999999999999999999999999998 568999999999999999999999987663
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=7.4e-07 Score=90.92 Aligned_cols=425 Identities=15% Similarity=0.186 Sum_probs=222.1
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCC-----CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQ-----PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 151 (655)
+....+.| ++..-++.|++... .....|...|.-..+.+-++-++.++++. .+ .++..-.--|..+++
T Consensus 109 lq~l~~Q~--~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY-Lk----~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 109 LQFLIKQG--LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY-LK----VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH-Hh----cCHHHHHHHHHHHHh
Confidence 33444455 66666666665321 22334666666666666676777777666 22 233335555566666
Q ss_pred cCCchHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--eeHHHHHHHHHHhC
Q 035659 152 LVQFRVGQAIHGMVIKSS------FEDDLFISNSLIHFYAICGDLA---MAYCVFVMIGKK--D--VVSWNSMISGFVQG 218 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~ 218 (655)
.+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 677777666666554221 1333344444444444432211 122233333321 2 23688888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc-----------cccCCC--------------------------
Q 035659 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD-----------LEFGRW-------------------------- 261 (655)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----------~~~~~~-------------------------- 261 (655)
|.+++|.++|++.... ..+..-|+.+.++|+.-.. -..+.+
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 8888888888876654 2233334444444432110 000000
Q ss_pred -----------------------hHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 035659 262 -----------------------PNEALSIFHELQLSKNVNPD------EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312 (655)
Q Consensus 262 -----------------------~~~A~~l~~~m~~~~~~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 312 (655)
+.+-...|.+..+. +.|- ...|..+.+.|-..|+++.|+.+|++..+..
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 33444444444433 2332 2246666667777788888888888877755
Q ss_pred CCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---C------------------ChhHHHHHHHHHHHcCChHHHH
Q 035659 313 IKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKS---R------------------DVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 313 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------------------~~~~~~~li~~~~~~g~~~~A~ 368 (655)
++-- ..+|..-.++=.+..+++.|.++.+.... + +...|...+..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 4322 44566666666677777777777765431 0 2234555555544555555555
Q ss_pred HHHHHHHHcCCC----------------------------------CCH-HHHHHHHHHH---HccCcHHHHHHHHHHcc
Q 035659 369 DLFSRMQEAKVK----------------------------------PNA-VTFTNVLCAC---SHSGLVDEGRMFFNQME 410 (655)
Q Consensus 369 ~~~~~m~~~g~~----------------------------------p~~-~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 410 (655)
.+|+++.+..+. |+. ..|+..+.-+ .....++.|..+|++..
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 566655544322 222 1122222211 11235666666666666
Q ss_pred hhcCccCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 411 PVYGVVPGVK--HYTCMVDMLGRAGLLDEAVEFIEKM--PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 411 ~~~~~~p~~~--~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+ +..|... .|-.....=-+-|....|..++++. .+++. ...|+..|.-....=-+..-..+++++++.-|++
T Consensus 578 ~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 578 D--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS 655 (835)
T ss_pred h--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH
Confidence 4 4444311 1111111222346666666666665 22222 2456655544333323444566777777766654
Q ss_pred cc--hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 485 HG--ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 485 ~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.. ...-.+.+-.+.|..+.|..++.--.+-
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 33 2233466677889999999988765443
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=1.4e-08 Score=110.15 Aligned_cols=243 Identities=13% Similarity=0.010 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 262 PNEALSIFHELQLSKNVNPD-EFTFVSVLSACA---------QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
.++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++++.+ +.+...+..+..++...|
T Consensus 277 ~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 34999999999874 455 445555544433 2345899999999999875 557788888999999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 035659 332 NLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFN 407 (655)
Q Consensus 332 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 407 (655)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999764 3 4567888999999999999999999999985 45432 23334445667899999999999
Q ss_pred HcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 408 QMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA-SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 408 ~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
++.+. ..|+ +..+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88653 2343 445777888899999999999999987 444553 34455555666666 57888888877754222
Q ss_pred cchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
+.....+...|+-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22233366777778888877766 7776654
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=3.1e-07 Score=95.72 Aligned_cols=423 Identities=15% Similarity=0.069 Sum_probs=269.2
Q ss_pred CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcc-h
Q 035659 66 LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF-T 141 (655)
Q Consensus 66 ~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~-t 141 (655)
+.-|+.+|..|.-+..++| ++..+.+.|++... .....|+.+-..|.-.|....|+.+++.-+.... .|+.. .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g--~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCG--QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-QPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-CCCcchH
Confidence 4568999999999999999 99999999998653 3445699999999999999999999987623222 34333 3
Q ss_pred HHHHHHHHH-ccCCchHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC--
Q 035659 142 FPFVIKAAA-RLVQFRVGQAIHGMVIKS--SF--EDDLFISNSLIHFYAIC-----------GDLAMAYCVFVMIGKK-- 203 (655)
Q Consensus 142 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~~~~~-- 203 (655)
+-..-+.|. +.+..+++...-.+++.. +. ......|-.+.-+|... ....++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334454 456777777777777662 21 11223344444444322 1133566666666442
Q ss_pred -CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH
Q 035659 204 -DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 204 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~ 282 (655)
|..+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++. +|+.+.+....+- .-|-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~------~Al~vvd~al~E~--~~N~ 547 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK------EALDVVDAALEEF--GDNH 547 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHh--hhhh
Confidence 333323334456677889999999888888876777888888888888888866 8888887776542 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---C--CChh-HHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---S--RDVF-VWSTMIA 356 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~~~-~~~~li~ 356 (655)
.....-+..-...++.+++......+... |...- .....|+-....+....+. + .+.. ++.-+..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 22222233333456666666665555441 00000 0001112223333333332 1 1222 2222222
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHH
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKPNA--------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVD 427 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~ 427 (655)
... -+...+..-.. |...-+.|+. ..|......+.+.+..++|...+.+..+ +.| ....|.....
T Consensus 619 -l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 619 -LVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGL 692 (799)
T ss_pred -HHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhH
Confidence 221 11111110000 2222222322 2344555668888999999988888764 334 3556777778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEY--ACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
.+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++.+|.++.+|..|+.++-+.|+.+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 888999999999988775 56676 6788999999999999888888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.|+...+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=3.3e-08 Score=94.75 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 035659 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIA 356 (655)
Q Consensus 280 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 356 (655)
.....+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 345677788888999999999999999998864 45677888899999999999999999998764 35667888899
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
.+...|++++|.+.|++.......| ....+..+...+...|++++|...+....+. ...+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998753222 3456666777889999999999999998753 222456788899999999999
Q ss_pred HHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 436 DEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 436 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+..|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999886 22 33456777788888899999999999888776543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=3.4e-08 Score=102.24 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCee-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGK----------KDVV-SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (655)
..+...|..+|...|+++.|..+++...+ +.+. ..+.+...|...+++++|..+|++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------ 266 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------ 266 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH------------
Confidence 44555688888888888888888866543 1221 223455667777777777777663
Q ss_pred HHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CC
Q 035659 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-----GI-KL 315 (655)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~ 315 (655)
|+.+++..... ..|. ..+++.|..+|.+.|++++|...++.+.+. |. .+
T Consensus 267 ----------------------AL~i~e~~~G~--~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 267 ----------------------ALTIREEVFGE--DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred ----------------------HHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 44444444322 3343 457778888899999999998888877652 10 11
Q ss_pred c-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHH
Q 035659 316 N-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA---KVKPN----AVTFT 387 (655)
Q Consensus 316 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~ 387 (655)
. ...++.+...++..+++++|. .++++..+. -+.++ ..+++
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~-------------------------------~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAK-------------------------------KLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHH-------------------------------HHHHHHHHHHHhhccccchHHHHHHH
Confidence 1 112233333444444444444 444433221 11222 24566
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhc-----CccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hh
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVY-----GVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-AS 452 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~ 452 (655)
.+...+.+.|++++|.++|+++.... +..+. ..+++.|...|.+.++..+|.++|.+. +..|+ ..
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence 77777777777777777777765432 11111 345666777777777777777777653 23455 36
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+|..|...|...|+++.|+++.+.+..
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 889999999999999999999988874
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=7.6e-09 Score=96.63 Aligned_cols=225 Identities=14% Similarity=0.073 Sum_probs=191.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYG 362 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 362 (655)
+-+...|.++|-+.+|+..++...+.. |-+.||-.|-..|.+..+.+.|..+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 567788899999999999999888864 6667888899999999999999999998765 3 5555566777888899
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 442 (655)
+.++|.++|+...+.. ..+......+...|.-.++.+-|+.+|..+.+. |+ .+++.|+.+.-.|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998852 335566667777888899999999999999875 65 46778999988888999999999888
Q ss_pred HhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 443 EKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 443 ~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++. -..|+ ..+|..+.......|++..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..+++..++..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 875 12344 56899999999999999999999999999999999999999999999999999999999887753
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.4e-06 Score=86.31 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
.|..-|+...... -. +...|--+..+|....+.++..+.|+...+.+ +-++.+|..-..++.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~-~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD-PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcC-cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887754 22 22237777788999999999999999999976 557778888888888899999999999988
Q ss_pred CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--
Q 035659 344 KSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-- 418 (655)
Q Consensus 344 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 418 (655)
.+- ++..|-.+.-+..+.+++++++..|++.+.. .+--+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~ 496 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREH 496 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccc
Confidence 754 5566777777777888999999999999886 444567888888899999999999999999874 3444
Q ss_pred -------cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 419 -------VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 419 -------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
+.+--.++- +.-.+++..|+.++.+. .+.|. ...+-+|...-.+.|+.++|+++|++...+-
T Consensus 497 ~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111111221 22348999999999987 55554 5688899999999999999999999988764
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.6e-07 Score=85.51 Aligned_cols=267 Identities=11% Similarity=0.076 Sum_probs=181.0
Q ss_pred CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCC
Q 035659 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV----TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~ 278 (655)
.|+.....+...+...|+.++|+..|++.... .|+.. .|..| +.+.|+.+ +...+...+... .
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e------~~~~L~~~Lf~~--~ 296 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCE------QDSALMDYLFAK--V 296 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHh------hHHHHHHHHHhh--h
Confidence 35666777777777777777777777776543 22221 12222 23344433 444444444321 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMI 355 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 355 (655)
.-+...|..-+......++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.... -+..+|.-|+
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 1223333333444456677788888777777754 33444555555667778899998888887543 3778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhc
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-CACS-HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRA 432 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~ 432 (655)
..|...|+..||.-+-+..... +.-+..+.+.+. ..|. ....-++|..+++... .+.|+ ....+.+...+.+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhh
Confidence 9999999999988877665543 334556655442 2332 2334588999998876 45776 34556677888899
Q ss_pred CCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 433 GLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
|+.++++.++++. ...||....+.|...++..+.+++|...|..++.++|++..+
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999999999885 667899999999999999999999999999999999987543
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=5e-08 Score=96.82 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 035659 296 GAMDIGVQIHAKMKKQG-IKL--NCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 122 234577777778888888888888877653 356778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 035659 370 LFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--P 446 (655)
Q Consensus 370 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~ 446 (655)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888877 3454 456666777777888888888888887643 454322222222344567788888888553 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLL-------ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..|+...| .......|+..++ ..++.+. ++.|....+|..++..|.+.|++++|...|++..+..
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22332222 1222234444333 2333333 3445566788888888888888888888888877644
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.7e-07 Score=91.57 Aligned_cols=219 Identities=13% Similarity=-0.016 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPD--EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
.+.++.-+.++.......|+ ...|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45788888888765433443 3457777788999999999999999999875 45688999999999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
|+...+ .+...|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 999864 35678888999999999999999999999884 45543222222234556789999999977553 233
Q ss_pred CCcchHHHHHHHHHhcCCHHHH--HHHHHh-CCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 417 PGVKHYTCMVDMLGRAGLLDEA--VEFIEK-MPI----VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~~~~A--~~~~~~-m~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
|+... ..++. ...|++.++ .+.+.+ ... .| ....|..+...+...|++++|+..|+++++.+|++..-+
T Consensus 197 ~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 197 KEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred ccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 43322 23333 335555443 322222 111 11 235899999999999999999999999999997654433
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=1e-07 Score=103.43 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChh
Q 035659 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC---------GDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFE 222 (655)
Q Consensus 155 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (655)
+++|.+.++++++.. +.+...+..+..+|... +++++|...+++..+ .+..+|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456667777766653 22344454444443321 234555555555443 23444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 035659 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a 301 (655)
+|+..|++..+.+ +.+...+..+...+...|+.+ +|+..+++..+.. |+. ..+..++.++...|++++|
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~------eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLE------EALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH------HHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHH
Confidence 5555555555442 112334444444455555533 5555555554422 221 1112222233334445555
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
...+.++.+...+.++..+..+..+|...|+.++|...++++
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 555444443321122333344444444445544444444443
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.1e-07 Score=89.59 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=140.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 035659 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289 (655)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 289 (655)
.-..-+...+++.+..++++...+.. ++....+..-|..+...|+-. +-..+=.++... .+-...+|-++.
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n------~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSN------KLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccc------hHHHHHHHHHHh--CCCCCcchhhHH
Confidence 33344444555555555555554432 222222333333444444432 333333344332 233344555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChHH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--D-VFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~ 366 (655)
--|...|+..+|++.+.+....+ +.-...|-.+...|+-.|.-|.|...+....+- . -.-+--+..-|.+.+..+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 55555555666666655554432 122335555555566555555555554443221 0 0011112233555566666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc-Ccc----CCcchHHHHHHHHHhcCCHHHHHH
Q 035659 367 ALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY-GVV----PGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 367 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
|.+.|.+... +.| |+...+-+.-...+.+.+.+|..+|+.....- .+. ....+++.|..+|.+++++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 6666666555 333 34444444444445566666666666554210 000 123346667777777777777777
Q ss_pred HHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 441 FIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 441 ~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
.+++. -.+.|..++.++.-.+...|+++.|...|.+++-+.|+|..+-..|..+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 77764 22335667777777777777777777777777777777755444444433
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.6e-08 Score=91.52 Aligned_cols=229 Identities=10% Similarity=0.057 Sum_probs=193.8
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 323 (655)
+.+.+.|.+.|... +|.+.|+..... .|-..||..+-.+|.+..+++.|..++.+-++. ++-++....-.
T Consensus 227 ~Q~gkCylrLgm~r------~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPR------RAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChh------hhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 56778888999966 999999988874 466779999999999999999999999998876 46666667778
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
...+-..++.++|.++++...+ .++.+...+..+|.-.++.+-|+.+|+++.+.|+. +...|+.+.-+|...+.+|
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 8888999999999999998865 36677777788899999999999999999999876 7788888888999999999
Q ss_pred HHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
-++--|+..... .-.|+ ..+|..+.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999988764 33454 467888888888999999999999876 2223 467899999999999999999999999
Q ss_pred HhccCCCC
Q 035659 477 LLELEPEN 484 (655)
Q Consensus 477 ~~~~~p~~ 484 (655)
+....|.-
T Consensus 455 A~s~~P~m 462 (478)
T KOG1129|consen 455 AKSVMPDM 462 (478)
T ss_pred hhhhCccc
Confidence 99988854
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=6.8e-06 Score=83.50 Aligned_cols=406 Identities=11% Similarity=0.051 Sum_probs=231.2
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHH--Hc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA--AR 151 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~--~~ 151 (655)
++.+.+.| ++++|.+.-.++.. .+...+..=+-++.+.+++++|+.+.+.- .+...+..-+ +=++| .+
T Consensus 19 ln~~~~~~--e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNG--EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHhccch--HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhh--HHHHHHHHH
Confidence 45666777 88888887777653 24444555666788888888888655432 1111111111 23343 46
Q ss_pred cCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (655)
.+..++|...+. |..++ ..+.-.-...+.+.|++++|..+|+.+.+.+...+...+.+-+-.- ..+... +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QL 163 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HH
Confidence 778888877766 33333 3355555667778888999999988887655555444433221110 001111 12
Q ss_pred HHHCCCCCCHhhHHHHHH---HHhccCccccCCChHHHHHHHHHHHHC-------CCCC-----CCHH-HHHHHHHHHhc
Q 035659 231 MEMENVKPDEVTMVAVLS---ACAKKRDLEFGRWPNEALSIFHELQLS-------KNVN-----PDEF-TFVSVLSACAQ 294 (655)
Q Consensus 231 m~~~g~~p~~~t~~~ll~---~~~~~~~~~~~~~~~~A~~l~~~m~~~-------~~~~-----p~~~-t~~~ll~~~~~ 294 (655)
|......| ..||..+.+ .+...|++. +|+++++..... +... -+.. .-.-+.-++-.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~------qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYN------QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333334 345555544 344567765 999999888221 1011 1111 12233445678
Q ss_pred cCCHHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhc----------------------------------------
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKC---------------------------------------- 330 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~---------------------------------------- 330 (655)
.|+.++|.+++..+++... +|. ...|.|+.+-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998763 332 2233333221111
Q ss_pred -----CCHHHHHHHHhhcCCC-ChhHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 331 -----GNLDKALEVFHTVKSR-DVFVWSTMIAGFA--MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 331 -----g~~~~A~~~~~~~~~~-~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
+..+.++++-...+.. ....+.+++.... +.....++.+++...-+....-..+.....+......|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 1111111111111111 1223333433322 2224666777777666542221234444555567889999999
Q ss_pred HHHHH--------HcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcC
Q 035659 403 RMFFN--------QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-ASVWGALLGACKIHE 465 (655)
Q Consensus 403 ~~~~~--------~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 465 (655)
.+++. .+.+. +.. +.+...++..|.+.++-+.|.+++.+. ...+. ..+|.-+..--.++|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 55432 333 446677888888888766666665543 22222 234444444456789
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
+-++|..+++++.+.+|++..+...+..+|++. +.+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999999999999876 4566655533
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=3.6e-06 Score=88.50 Aligned_cols=287 Identities=13% Similarity=0.065 Sum_probs=165.4
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcch-HHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFT-FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC--- 187 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 187 (655)
.+...|++++|++.+..- . ...+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~-~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKN-E--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhh-h--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 345566777777766543 1 12334333 3344455666677777777777777665 33333444444444221
Q ss_pred --CCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChh-HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCCh
Q 035659 188 --GDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFE-KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262 (655)
Q Consensus 188 --g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 262 (655)
.+.+....+++++.. |...+.--+.-.+.....+. .+...+..+...|+++ +|+.|-..|....+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~----- 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA----- 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH-----
Confidence 235555666665543 21111111211122212232 2334555666666543 3444444444333322
Q ss_pred HHHHHHHHHHHH----CCC---------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 035659 263 NEALSIFHELQL----SKN---------VNPDEF--TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327 (655)
Q Consensus 263 ~~A~~l~~~m~~----~~~---------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (655)
-..+++..... .+. -+|... ++.-+...+...|+.++|.+..+..+++. +..+..|..-...|
T Consensus 161 -~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 161 -IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred -HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 22233333321 111 134442 44555666788999999999999998864 33377888888889
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHcc
Q 035659 328 TKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT--------FTNVLCACSHS 396 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~ 396 (655)
-+.|++++|.+.++....- |-..-+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887764 455666677788889999999999888877654332211 13345678888
Q ss_pred CcHHHHHHHHHHcchh
Q 035659 397 GLVDEGRMFFNQMEPV 412 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~ 412 (655)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888777766544
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=2.9e-06 Score=89.21 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=183.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCee-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-cCcc
Q 035659 181 IHFYAICGDLAMAYCVFVMIGK--KDVV-SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-KRDL 256 (655)
Q Consensus 181 i~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~ 256 (655)
...+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+++.+ |+...|...+..+.. ....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3455677888888888876544 3433 44566777788888888888888888764 666666655555541 1111
Q ss_pred ccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 257 ~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
... ..+...++|+++...- |.......+.-.+..... -..+...+..+.+.|+|+ +++.|-..|....+.+-
T Consensus 89 ~~~-~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDE-DVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccc-cHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 000 0336677777776532 433333222211222112 234555666667777644 66667677765555555
Q ss_pred HHHHHhhcC------------------CCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 035659 336 ALEVFHTVK------------------SRDV--FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACS 394 (655)
Q Consensus 336 A~~~~~~~~------------------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 394 (655)
..+++.... .|.. .++.-+...|-..|++++|++++++.++. .|+ ...|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 555554432 1122 24455677788999999999999999984 566 556777777899
Q ss_pred ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--C----hhHH--HHHHHHHHh
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVP--G----ASVW--GALLGACKI 463 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~---~~p--~----~~~~--~~ll~~~~~ 463 (655)
+.|++++|.+.++...+. -.-|...-+-.+..+.|+|++++|.+++.... ..| | ...| .....+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998752 22355566667778889999999999887762 111 1 1234 334577889
Q ss_pred cCCHHHHHHHHHHHhc
Q 035659 464 HENVELAEYACSHLLE 479 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~ 479 (655)
.|++..|++-|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999988887776
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=9.5e-06 Score=83.98 Aligned_cols=192 Identities=15% Similarity=0.239 Sum_probs=139.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 035659 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 289 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+.+......+.+|..+++.+.+.. ....-|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 344556677888888888877654 233457778889999999999999997643 4666788999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 448 (655)
++-.+.. |.......|..-..-.-+.|++.+|.++|-.+. .|+ .-|.+|-+.|..++.+++.++--
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h-- 877 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH-- 877 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--
Confidence 8876553 233444556555556778899999988876553 354 45788999999999999888862
Q ss_pred CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 449 PG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 449 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
|+ ..|...+..-+-..|+...|+..|-++ .-|..-.++|...+.|++|.++-+
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 33 345666777788888888888777654 335566777888888888777654
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=2e-05 Score=81.02 Aligned_cols=361 Identities=11% Similarity=0.076 Sum_probs=206.0
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHh
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQ 217 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 217 (655)
.|..+.-......+.++|.+.+..+++.+ +.|..++.-|.-.-+..|+++.....-....+ .....|..+..++.-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33333333333444555555555555544 34444454444444445555444443333322 355678888888888
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH------HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH-HHHHH
Q 035659 218 GGFFEKAIELYREMEMEN-VKPDEVTMVAVLSA------CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FVSVL 289 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll 289 (655)
.|+...|..++++..+.. -.|+...|...... ..+.|.. ++|++-+..-... ..|... -..-.
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~------q~ale~L~~~e~~---i~Dkla~~e~ka 226 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL------QKALEHLLDNEKQ---IVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH------HHHHHHHHhhhhH---HHHHHHHhhhHH
Confidence 999999999998887764 35666665544332 2334443 3777666554332 223332 33445
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhcCCC---ChhHHHHHHHHHHHcCChH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL-EVFHTVKSR---DVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 365 (655)
..+.+.+++++|..++..++..+ +-+...|-.+..++.+..+.-++. .+|....+. ....-..=++......-.+
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 56789999999999999999875 333444445555555443433443 555554431 0000000001111112233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH---H-HHHHHHHcchhcC----------ccCCcc--hHHHHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD---E-GRMFFNQMEPVYG----------VVPGVK--HYTCMVDML 429 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~~----------~~p~~~--~y~~li~~~ 429 (655)
..-+++..+.+.|+++--..+.++- -.-...+ + +..+...+... | -.|... ++-.++..|
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHH
Confidence 4455667777777765433333332 2111111 1 12222222111 1 133433 345667788
Q ss_pred HhcCCHHHHHHHHHhC-CCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 430 GRAGLLDEAVEFIEKM-PIVPGAS-VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
-+.|+++.|+.+++.. +..|+.+ .|..=...+...|++++|...++++.+++-.|...-.--++-..++.+.++|.++
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 8999999999999886 5566643 4444456788889999999999999999966654444556666788999999999
Q ss_pred HHHHHhCCC
Q 035659 508 RKHMRVSGL 516 (655)
Q Consensus 508 ~~~m~~~g~ 516 (655)
.....+.|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 888877664
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.2e-06 Score=78.91 Aligned_cols=403 Identities=12% Similarity=0.109 Sum_probs=222.3
Q ss_pred ChHHHHHHhhcCCC------CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHH
Q 035659 87 SLEYAREMFDQIPQ------PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160 (655)
Q Consensus 87 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 160 (655)
++.-|+.+++--.. .++..| +..++-+-|++++|+..|...+. . -.|+...+..|.-...-.|...+|++
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~-~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMN-K-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhc-c-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 67888877764331 122333 33456677889999988888733 2 34555555555555556677777777
Q ss_pred HHHHHHHhCCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 035659 161 IHGMVIKSSFEDDLFISN-SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239 (655)
Q Consensus 161 ~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (655)
+-... |+....+ .|...-.|.|+-++-..+-+.+... ...--+|.+.....-.+++|+++|.+.+.. .|+
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 65443 3333333 3445555666655555444444331 112223444444445678888888888765 244
Q ss_pred HhhHHHHHHHH-hccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--CCHHHH--HH----------H
Q 035659 240 EVTMVAVLSAC-AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL--GAMDIG--VQ----------I 304 (655)
Q Consensus 240 ~~t~~~ll~~~-~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g~~~~a--~~----------~ 304 (655)
-...|.-+..| .+..-++ -+.++++--.+. ++-+....+..+....+. |+..+. .+ .
T Consensus 184 y~alNVy~ALCyyKlDYyd------vsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYD------VSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hhhhHHHHHHHHHhcchhh------hHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 44444444433 3444433 555555554443 222333333333222222 111111 11 1
Q ss_pred HHHHHHcCC------C------C-----chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC----
Q 035659 305 HAKMKKQGI------K------L-----NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC---- 363 (655)
Q Consensus 305 ~~~~~~~g~------~------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~---- 363 (655)
.+.+.++++ + | -+..--.|+-.|.+.+++.+|..+.+.+....+.-|-.-.-.++..|+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 112222211 0 0 012223455567888999999998888765544433322222333332
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 364 ---GREALDLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 364 ---~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
..-|.+.|+-.-+++..-|.+. --++.+++.-...+|+.+-+++.+.. |=...|... -.+..+++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHH
Confidence 3345555555544544433322 12344555666788899988888865 233333333 35778899999999999
Q ss_pred HHHHhCC--CCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhccC-CCC-cchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 440 EFIEKMP--IVPGASVWGALL-GACKIHENVELAEYACSHLLELE-PEN-HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 440 ~~~~~m~--~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++|-++. .-.|..+|.+++ .+|.+.+.++.|- +.+++.+ |.+ ......+++-|.+++.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW---~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW---DMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH---HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9997762 113566776655 5566777777764 4455555 322 234456788888999988888888888765
Q ss_pred C
Q 035659 515 G 515 (655)
Q Consensus 515 g 515 (655)
.
T Consensus 491 D 491 (557)
T KOG3785|consen 491 D 491 (557)
T ss_pred C
Confidence 4
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=4.1e-07 Score=81.62 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=130.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHH
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDM 428 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~ 428 (655)
...+.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445667788888888888888888874 44 456777777888888999999888888874 4554 5677888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 429 LGRAGLLDEAVEFIEKMPIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+++.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8888999999998888622232 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 035659 505 SELRKHMRVSGL 516 (655)
Q Consensus 505 ~~~~~~m~~~g~ 516 (655)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988877654
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.6e-05 Score=74.23 Aligned_cols=380 Identities=12% Similarity=0.047 Sum_probs=236.6
Q ss_pred hhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc
Q 035659 79 PCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 79 ~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~ 155 (655)
.|-+.| ++++|..++..+.+ ++...|-.|.-.+---|.+.+|..+-... .-++.....++...-+.++-
T Consensus 66 C~fhLg--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 66 CYFHLG--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHhhc--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 345567 99999999987653 55566766766666678888888876655 12344455666677788888
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHH-HHHHHHhCCChhHHHHHHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNS-MISGFVQGGFFEKAIELYREME 232 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 232 (655)
++-..+++.+... ..-.-+|..+....-.+.+|.+++.++.. |+....|. |.-.|.+...++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8888888776543 23334555555555678999999998875 45555554 3446677777777777776665
Q ss_pred HCCCCCCH-hhHHHHHHHHhc--cCccccC---------C------------------ChHHHHHHHHHHHHCCCCCCCH
Q 035659 233 MENVKPDE-VTMVAVLSACAK--KRDLEFG---------R------------------WPNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 233 ~~g~~p~~-~t~~~ll~~~~~--~~~~~~~---------~------------------~~~~A~~l~~~m~~~~~~~p~~ 282 (655)
+. -||. ...|.......+ .|+.... . ..+.|++++-.+.. +.|.
T Consensus 213 ~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPE- 286 (557)
T KOG3785|consen 213 RQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPE- 286 (557)
T ss_pred Hh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---hChH-
Confidence 54 2332 222222221111 1111100 0 02233333333222 1221
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH-----HHhcCCHHHHHHHHhhcCCC-----ChhHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM-----YTKCGNLDKALEVFHTVKSR-----DVFVWS 352 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 352 (655)
.-..++--|.+.+++.+|..+...+.- ..|.......++.+ ......+.-|.+.|+..-+. .+.--.
T Consensus 287 -ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 287 -ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred -hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 122333446788888888877655421 22333333322221 12223356677777766542 233455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHH-HHHHHHHh
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT-CMVDMLGR 431 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-~li~~~~~ 431 (655)
+|.+.+.-..++++++-+++....--..-|...| .+..+.+..|.+.+|+++|-.+... .+ .|..+|. .|...|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHh
Confidence 6677777778899999988888775333333433 5778999999999999999988642 22 3445554 55678999
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 432 AGLLDEAVEFIEKMPIVPGASVWGA-LLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 432 ~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++..+-|++++-++.-..+..+.-. +..-|.+.+.+=-|-+.|+.+..++|.
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 9999999999999864444444444 446689999999999999999999973
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-05 Score=77.27 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
.|...+--+.....++-|......+.+.+...|+.++|...|+...-.+ |+.. ......-.+.+.|+.+....+...
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 4444444333333366778888888899999999999999998887643 3221 112222234566777777666665
Q ss_pred cCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-
Q 035659 343 VKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP- 417 (655)
Q Consensus 343 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 417 (655)
+... ....|-.-........++..|+.+-++.++. .| +...|..-...+...|+.++|.-.|.... .+.|
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~ 366 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPY 366 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHH---hcchh
Confidence 5433 3445655556666778888888888888774 33 33444444456778899999999998886 4454
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALL-GACK-IHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
+...|..|+..|...|++.||..+-+.. .+..+..+...+. ..|. .-.--|+|.+++++.++++|.-..+-+.++.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 5788999999999999999987665442 1123444443332 2222 2233578889999999999988888888899
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+...|+.+++..+++....
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHhhCccchHHHHHHHHHh
Confidence 99999999999888876543
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.3e-07 Score=95.57 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=176.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+.+.|++.+|.-.|+..++.+ +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999998876 56788999999999999999999999988765 36677888888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 369 DLFSRMQEAKVK--------PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 369 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
..|++-+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988653211 01000000 11222334455566666666555666888899999999999999999999
Q ss_pred HHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 441 FIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 441 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.|+.. .++|+ ...||-|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.++||.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 66775 689999999999999999999999999999999999999999999999999999998876544
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-05 Score=81.72 Aligned_cols=339 Identities=18% Similarity=0.184 Sum_probs=187.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-hH
Q 035659 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV-TM 243 (655)
Q Consensus 168 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 243 (655)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|.-.|.-..|+.++++-....-.|+.. .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888888888888899999999888887654 345678888888888888888888887765544334333 33
Q ss_pred HHHHHHHhc-cCccccCCChHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHH
Q 035659 244 VAVLSACAK-KRDLEFGRWPNEALSIFHELQLS-----KNVNPDEFTFVSVLSACAQL-----------GAMDIGVQIHA 306 (655)
Q Consensus 244 ~~ll~~~~~-~~~~~~~~~~~~A~~l~~~m~~~-----~~~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~ 306 (655)
-..-..|.. .+..+ +++++-.+.... +.+.|- .|..+.-+|... ....++.+.++
T Consensus 397 Lmasklc~e~l~~~e------egldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 397 LMASKLCIERLKLVE------EGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHHHHHHHhchhhhh------hHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333334433 34433 333333333221 102222 122222222111 01234555555
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC-
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK----SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVK- 380 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~- 380 (655)
+.++.+. .|+.+.--+.--|+..++++.|.+...+.. ..+...|.-+.-.+.-.+++.+|+.+.+..... |..
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 5555431 122222222223444555555555544432 234555555555555555555555555544332 100
Q ss_pred -----------------CCHHHHHHHHHHHHc---------cC--------------cHHHH-------HHHHH----Hc
Q 035659 381 -----------------PNAVTFTNVLCACSH---------SG--------------LVDEG-------RMFFN----QM 409 (655)
Q Consensus 381 -----------------p~~~t~~~ll~a~~~---------~g--------------~~~~a-------~~~~~----~~ 409 (655)
--..|...++..+-. .| +..++ ..+.. .+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 000111111111110 00 00000 00000 00
Q ss_pred -----chhcCccCCc--------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 410 -----EPVYGVVPGV--------KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYAC 474 (655)
Q Consensus 410 -----~~~~~~~p~~--------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 474 (655)
.....+.|+. ..|....+.+.+.+..++|...+.+. .+.| ...+|......+...|+.++|.+.|
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0111222332 23556667788888889988777665 3333 3567777777788999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 035659 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSE--LRKHMRVSG 515 (655)
Q Consensus 475 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g 515 (655)
..++.++|+++.....++.++.+.|+-.-|.. ++..+.+.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999999999999999999999998877777 777776643
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.72 E-value=0.00013 Score=75.12 Aligned_cols=354 Identities=11% Similarity=0.158 Sum_probs=183.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 183 (655)
..|-.-+..+.++|+.......|++.+..-.+.-....|...+......+-++.+..+++..++.. +..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 467777778888888888888888875555555566678888887777787888888888777653 3336677778
Q ss_pred HHhcCCHHHHHHHHhhcCCCC----------eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 035659 184 YAICGDLAMAYCVFVMIGKKD----------VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253 (655)
Q Consensus 184 ~~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 253 (655)
+++.+++++|-+.+..+...+ ...|+.+-...+++-+.-.-+.+ +.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-da----------------------- 234 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DA----------------------- 234 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HH-----------------------
Confidence 888888888888877765432 23344444444443332222221 22
Q ss_pred CccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 254 RDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 254 ~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
+++.+.. .-+|. ..|++|.+-|.+.|.++.|..+|.+.+.. ..++.-+..+.++|+.-.
T Consensus 235 --------------iiR~gi~---rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 235 --------------IIRGGIR---RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred --------------HHHhhcc---cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 2222221 12232 23444555555555555555555544432 122222333333332110
Q ss_pred ----------------------CHHHHHHHHhhcCC---------------CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 035659 332 ----------------------NLDKALEVFHTVKS---------------RDVFVWSTMIAGFAMYGCGREALDLFSRM 374 (655)
Q Consensus 332 ----------------------~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (655)
+++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+.
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHH
Confidence 11222222322221 123333333322 234555556666665
Q ss_pred HHcCCCCC------HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 375 QEAKVKPN------AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 375 ~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
... +.|- ...|..+..-|...|+++.|..+|++..+. ..+-- ..+|..-.++=.+..+++.|++++++.
T Consensus 374 v~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 374 VKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 543 2331 233555555666667777777777666542 11110 234444445555566666666666654
Q ss_pred ---CCC-----------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 446 ---PIV-----------------PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 446 ---~~~-----------------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
|-. .+..+|..++..--..|-++.-..++++++++.--.|..-...+..+....-++++.
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 111 123345555555555566666666666666655333344444444444444455555
Q ss_pred HHH
Q 035659 506 ELR 508 (655)
Q Consensus 506 ~~~ 508 (655)
+++
T Consensus 532 k~Y 534 (835)
T KOG2047|consen 532 KAY 534 (835)
T ss_pred HHH
Confidence 544
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=4.4e-07 Score=88.75 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cC
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH----SG 397 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 397 (655)
....+|...|++++|.++++.. .+.......+..|.+.++.+.|.+.++.|.+. . +..+...+..++.. ..
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 3344566677777777777665 44555566677777777777777777777763 2 33344444444332 22
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH-HHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV-ELAEYAC 474 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~ 474 (655)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++. ...| |+.++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466777777776543 3455556666666666666666666666553 2222 344555555555555555 5556666
Q ss_pred HHHhccCCCC
Q 035659 475 SHLLELEPEN 484 (655)
Q Consensus 475 ~~~~~~~p~~ 484 (655)
.++.+..|..
T Consensus 260 ~qL~~~~p~h 269 (290)
T PF04733_consen 260 SQLKQSNPNH 269 (290)
T ss_dssp HHCHHHTTTS
T ss_pred HHHHHhCCCC
Confidence 6666666654
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.72 E-value=5.2e-06 Score=74.72 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=151.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
+..-+.-.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+ .+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34455667888899999999999998876 55677888888889999999999988887653 466778888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A 438 (655)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+. .|+ ......+.+.....|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHH
Confidence 899999999998887643222 2467777777777888999999988888753 443 55677788888888888888
Q ss_pred HHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 439 VEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 439 ~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+++.. ...++..+.-..|..-...|+.+.+.+.-.++...-|...
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888776 3346666666677777788888888877777777777553
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-06 Score=85.58 Aligned_cols=384 Identities=13% Similarity=0.043 Sum_probs=233.7
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGD 189 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 189 (655)
.+....|+++.|+..|.+.+... ++|..-|+.=..+++..|+++.|.+=-..-++.. |+ ..-|+-+..++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhccc
Confidence 34567899999999998873322 3478888888899999999998887766666653 44 5678888888888999
Q ss_pred HHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHH------HHHHC---CCCCCHhhHHHHHHHHhccCc-c
Q 035659 190 LAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYR------EMEME---NVKPDEVTMVAVLSACAKKRD-L 256 (655)
Q Consensus 190 ~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~t~~~ll~~~~~~~~-~ 256 (655)
+++|+..|.+-.+. |...++-+..++.... ++.+.|. .+... ........|..++...-+... +
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999877653 4556666766661111 1111111 11000 001112233333333322110 0
Q ss_pred ccCCC---hHHHHHHHHH-----HHHCC------CCCC------------C----------HHHHHHHHHHHhccCCHHH
Q 035659 257 EFGRW---PNEALSIFHE-----LQLSK------NVNP------------D----------EFTFVSVLSACAQLGAMDI 300 (655)
Q Consensus 257 ~~~~~---~~~A~~l~~~-----m~~~~------~~~p------------~----------~~t~~~ll~~~~~~g~~~~ 300 (655)
..-.. ...|...+.. +...+ +..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00000 0011110000 00000 0111 1 1124556677777788888
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hHHHHHHHHHHHcCChHHHHHH
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV----------FVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~ 370 (655)
+.+-+....+.. .+..-++....+|...|.+..+...-+...+.+. .+...+..+|.+.++++.++..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 888888888765 5666677788888888888777666655443321 1222244466677888889999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAVEFIEKM-PIV 448 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m-~~~ 448 (655)
|.+.......||..+ +....+++........ -+.|.. .---.-...+.+.|++..|+..|.++ ...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 888766544443222 2223334433333322 223332 11111245567888888888888876 333
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 449 P-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 449 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.|++-.+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 567888888888888888888888888888888888888888888888888888888888766643
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.3e-05 Score=82.97 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhhHHHHHHH---------------------------HHhcC
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--IKLNCYLTTSLIDM---------------------------YTKCG 331 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~---------------------------~~~~g 331 (655)
|....+....++...+-..+-.+++++++-.+ +.-+....|.|+-. ....+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 34445566667777777777777777765321 11222222322222 22334
Q ss_pred CHHHHHHHHhhcCC-------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 332 NLDKALEVFHTVKS-------------------------RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 332 ~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
-+++|..+|+...- .....|..+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 56677777765431 13457899999999999999988877433 267789
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 466 (655)
..++..+.+.|.+++-..++...+++ .-+|. .-+.||-+|++.+++.+-++++. -||..-...+..-|...|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhh
Confidence 99999999999999999999888775 55555 44589999999999999888774 3788888888999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++.|.-++... +.|..|+..+...|.+..|...-++
T Consensus 1210 y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1210 YEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998877654 5677777788888877776654433
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=9.5e-05 Score=76.27 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=59.6
Q ss_pred CCChhHHHH--HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 448 VPGASVWGA--LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 448 ~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
.|....|.. +...+-..|+++.|+...+.++.--|.-...|..-+.++...|..++|...+++..+...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 567777765 445678899999999999999999998888999999999999999999999999887543
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=2e-05 Score=84.71 Aligned_cols=447 Identities=12% Similarity=0.055 Sum_probs=268.2
Q ss_pred HHHHHHHHHhCCCCC-hhhhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhh
Q 035659 55 KQIHTQMLRTGLFFD-PYSASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 130 (655)
..++..+....+.++ ...|..|-..|.... +...|.+.|+..- ..+..+|..+...|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 445555554444443 356788888888877 8888999998754 4677789999999999999999998844331
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHH-
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN- 209 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~- 209 (655)
+......-...|...--.+.+.++...+..-++..++.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 221111122233334445567788888888888888876 678889999999999999999999999888764443332
Q ss_pred --HHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhccCccccCCC-hHHHHHHHHHHHHCC----
Q 035659 210 --SMISGFVQGGFFEKAIELYREMEME------NVKPDEVTMVAVLSACAKKRDLEFGRW-PNEALSIFHELQLSK---- 276 (655)
Q Consensus 210 --~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~~~-~~~A~~l~~~m~~~~---- 276 (655)
-....-+..|.+.+|+..+...... +..--..++..+...+.-.|-...+.. .+++++.|.-.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2233456689999999988876532 111122333333332222222210000 223333333222211
Q ss_pred ---------------CCCCC---HHHHHHHHHHHhccCCH---H---HHHHHHHHHHHcCCCCchhhHHHHHHHHHh---
Q 035659 277 ---------------NVNPD---EFTFVSVLSACAQLGAM---D---IGVQIHAKMKKQGIKLNCYLTTSLIDMYTK--- 329 (655)
Q Consensus 277 ---------------~~~p~---~~t~~~ll~~~~~~g~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 329 (655)
-+.|| ......+..-.-..+.. | .|-+.+-. ...+..+...|..|+..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHH
Confidence 01222 22122222112222221 1 11111111 11122334555556555543
Q ss_pred -cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 035659 330 -CG----NLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401 (655)
Q Consensus 330 -~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 401 (655)
+| +...|...+.... ..+...||.|.-. ...|.+.-|...|-+-... -+-+..+|..+.-.|....+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHH
Confidence 22 2345666666543 3567788887655 5556777777777665554 23366778888777888899999
Q ss_pred HHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCCHHHH---
Q 035659 402 GRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGASVWGALLGACKIHENVELA--- 470 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a--- 470 (655)
|...|.... .+.|+ ..-|-.........|+.-++..+|..- +--|+..-|-....--..+|+.++-
T Consensus 869 A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 869 AEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred hhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 999999886 44554 444544444455677777888777652 2335555555555455566665544
Q ss_pred -------HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 471 -------EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 471 -------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
.-..++.+...|+...+|...+....+.+.+++|.+...+.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33445555567888899999999999999888888776654
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5e-05 Score=79.92 Aligned_cols=376 Identities=13% Similarity=0.104 Sum_probs=236.7
Q ss_pred CChhhhhHHHH--hhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCC--------CC
Q 035659 68 FDPYSASKLFT--PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY--------FP 137 (655)
Q Consensus 68 ~~~~~~~~ll~--~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~p 137 (655)
-|..+-.++++ .|.--| +++.|.+-.+.+.. -..|..|.+.+++..+.+-|.-.+-.|....|. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG--~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIG--SMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEec--cHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 46677777775 477788 99999888777653 456999999999999988887776666322221 23
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCeeHHHHHHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFV 216 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~ 216 (655)
+ .+=..+.......|.+++|+.++++-.+.. .|=..|-..|.+++|.++-+.-.+ .=-.||......+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 232333333467888999999999887653 244567788999999988754322 11236666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
..++.+.|++.|++-.. ..++. .+.+.. ...+++.|-+- ..|...|.-...-+-..|
T Consensus 870 ar~Di~~AleyyEK~~~-------hafev-~rmL~e---------~p~~~e~Yv~~------~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV-------HAFEV-FRMLKE---------YPKQIEQYVRR------KRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccHHHHHHHHHhcCC-------hHHHH-HHHHHh---------ChHHHHHHHHh------ccchHHHHHHHHHHhccc
Confidence 78889999988875421 11110 000000 00222222111 224455555666667789
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+++.|..+|..+.+ |-+++...|-.|+.++|-++-++- .|......+...|-..|++.+|...|.+.+.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999987765 456777778889999998887653 4666677788889999999999999987654
Q ss_pred cCCCCCHHHHHHHHHHHH---------------ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHH
Q 035659 377 AKVKPNAVTFTNVLCACS---------------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 377 ~g~~p~~~t~~~ll~a~~---------------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
|...|+.|- ...+.-.|-.+|++. |.. ..--+..|-++|.+.+|+++
T Consensus 996 ---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 996 ---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHH
Confidence 223333222 222344455555544 211 12345568888888888776
Q ss_pred HHhC-------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------------------CCCC--
Q 035659 442 IEKM-------------PIVPGASVWGALLGACKIHENVELAEYACSHLLEL----------------------EPEN-- 484 (655)
Q Consensus 442 ~~~m-------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------~p~~-- 484 (655)
-=+- .-..|+...+.-..-+..+.++++|..++-.+.+. -|..
T Consensus 1058 AF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1058 AFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred HHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence 3221 11235555565556667777777776655444331 1111
Q ss_pred -------cchHHHHHHHHHhcCCchhHHHHHH
Q 035659 485 -------HGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 485 -------~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
......++..|.++|.+..|.+=|.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 1356678889999998887766554
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00016 Score=77.86 Aligned_cols=278 Identities=15% Similarity=0.169 Sum_probs=177.6
Q ss_pred cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHH
Q 035659 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~ 266 (655)
.+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.++ +-.
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e------dLv 1153 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE------DLV 1153 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH------HHH
Confidence 34556666665555544 45888888888888888888766443 35667888888888888876 666
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 035659 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346 (655)
Q Consensus 267 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 346 (655)
+++.-.++.. -.|... +.++-+|++.+++.+-+++. .-|+......+.+-+...|.++.|.-+|..
T Consensus 1154 ~yL~MaRkk~-~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKV-REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHhh-cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 6665555544 455443 46777888888877666554 247777777777878888888888777764
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
+.-|..+...+...|++..|...-++.- +..||..+-.+|...+.+.-| +|... .+.....-..-|+
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELI 1286 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHH
Confidence 4568888888888898888887665443 567888888888876655544 33321 2223344566788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-C-C------CCcchHHHHHHHHH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLEL-E-P------ENHGALVLLSNIYA 496 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-p------~~~~~~~~l~~~~~ 496 (655)
.-|...|.++|-+.+++.. +.+. .--.|+-|.-.|.+.+ +++..+.++-.... + | +....|.-|.-.|.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888764 4332 2234444444444433 33333333322211 1 1 12345666777777
Q ss_pred hcCCchhHHH
Q 035659 497 KTGKWDNVSE 506 (655)
Q Consensus 497 ~~g~~~~a~~ 506 (655)
+-..|+.|.-
T Consensus 1366 ~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1366 KYEEYDNAAL 1375 (1666)
T ss_pred hhhhhhHHHH
Confidence 7777776654
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=5.4e-05 Score=71.95 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=103.4
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChHHH
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 367 (655)
.+...|+...+......+++.. +.|...+..-..+|...|++..|+.=++.. ...+...+.-+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666666643 456666666677777777777776554443 334555666666666777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHH----HH---------HHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHH
Q 035659 368 LDLFSRMQEAKVKPNAVTFT----NV---------LCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDML 429 (655)
Q Consensus 368 ~~~~~~m~~~g~~p~~~t~~----~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~ 429 (655)
+...++..+ +.||....- .| +......+.+.++.+-.+...+. .|. ...+..+-..|
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 777776665 455543211 10 01122334444444444444322 232 11223333445
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 430 GRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
...|++.+|++.-.+. .+.|| +.++.--..+|..-..++.|+.-|+++.+.+++|.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 5556666666555443 34444 45555555666666666666666666666666554
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=6.1e-05 Score=77.49 Aligned_cols=194 Identities=9% Similarity=0.075 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeH---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVS---WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
...+..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 33455566666667777776555544332 22222 2222344566777888887777776652 122223222 1
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 326 (655)
..+...+..... .+.+.+.+.. ... ..|+. .....+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 84 ~~~~~~~~~~~~--~~~~~~~l~~--~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 84 LGAFGLGDFSGM--RDHVARVLPL--WAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred HHHHHhcccccC--chhHHHHHhc--cCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 122222221100 1134444333 111 22332 233344455666667777777776666654 3345555666666
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 327 YTKCGNLDKALEVFHTVKSR-----DV--FVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
|...|++++|...+++.... +. ..|..+...+...|+.++|..+|++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666654431 11 123345555556666666666666554
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=7.9e-05 Score=76.64 Aligned_cols=301 Identities=12% Similarity=0.006 Sum_probs=153.0
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHH-HHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMV-AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~ 283 (655)
..|..+...+...|+.+++...+.+..+... .++..... .....+...|+.+ +|.+.+++..... +.|..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~------~A~~~~~~~l~~~--P~~~~ 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP------KALALLEQLLDDY--PRDLL 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHC--CCcHH
Confidence 3455566666666666666555555443211 12221111 1122334456644 7777777766542 33333
Q ss_pred HHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 284 TFVS---VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 284 t~~~---ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
.+.. ........+..+.+.+.+... ....+........+...+...|++++|.+.+++..+ .+...+..+...
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3332 111112234444444444431 111122233444555667777777777777777653 245566667777
Q ss_pred HHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchH-H--HHHHHHHh
Q 035659 358 FAMYGCGREALDLFSRMQEAKV-KPNA--VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-T--CMVDMLGR 431 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y-~--~li~~~~~ 431 (655)
|...|++++|..++++...... .|+. ..|..+...+...|++++|..+++.........+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 7777777777777777665321 1222 234456666777777777777777764321111111111 1 22333333
Q ss_pred cCCHHHHHHH---HHh---C-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------CcchHHHHHHHH
Q 035659 432 AGLLDEAVEF---IEK---M-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE---------NHGALVLLSNIY 495 (655)
Q Consensus 432 ~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~ 495 (655)
.|..+.+.++ ... . +.............++...|+.+.|...++.+....-. ........+.++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4432222222 111 1 11011122224455566777777777777776553211 233445666677
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 035659 496 AKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~g 515 (655)
...|++++|.+.+......+
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 78888888888887776654
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=9e-05 Score=69.11 Aligned_cols=403 Identities=11% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHhhhcCCCCChHHHHHHhhcCCCC---CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH-HHHHH
Q 035659 75 KLFTPCALGTFSSLEYAREMFDQIPQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV-IKAAA 150 (655)
Q Consensus 75 ~ll~~y~~~g~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l-l~~~~ 150 (655)
+.+.-..+-. ++++|++++..-.++ +....+.|-.+|-...++..|-+.++++ .. ..|...-|..- ...+.
T Consensus 15 aviy~lI~d~--ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 15 AVVYRLIRDA--RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-GQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hChHHHHHHHHHHHHHH
Confidence 3333333444 666666666544432 2333455555566666666666666665 22 22333333211 12333
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhHHHHHH--H--HHHhcCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHhCCChhHHH
Q 035659 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLI--H--FYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAI 225 (655)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~--~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 225 (655)
+.+.+..|..+...|... ....+-.+ . .....+++..++.+.++.+. .+..+.+...-...+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 445555555555554321 11111111 1 11234556666666666653 44445455555555666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHhccCCHHHH
Q 035659 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF----TFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~~~~~~g~~~~a 301 (655)
+-|+...+-|---....|+..+..|.+ ++.. .|++...++..+| ++-... .-.-.+++ ...|+ -
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~-~qya------sALk~iSEIieRG-~r~HPElgIGm~tegiDv-rsvgN---t 232 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSS-RQYA------SALKHISEIIERG-IRQHPELGIGMTTEGIDV-RSVGN---T 232 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhh-hhHH------HHHHHHHHHHHhh-hhcCCccCccceeccCch-hcccc---h
Confidence 666665544322233445554444433 2322 5666666655555 321100 00000000 00000 0
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+.+
T Consensus 233 ~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0000000 0123444445567889999999999999864 666665543221 23445555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc-cCCcchHHHHHHHHHh-cCCHHHHHHHHHhCCCCC--Chh
Q 035659 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV-VPGVKHYTCMVDMLGR-AGLLDEAVEFIEKMPIVP--GAS 452 (655)
Q Consensus 377 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~-~g~~~~A~~~~~~m~~~p--~~~ 452 (655)
.+. -...||..++-.||+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+.-.- ...
T Consensus 305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLR 381 (459)
T KOG4340|consen 305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLR 381 (459)
T ss_pred cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 34678999999999999999998888754321 11 11223333 3344433 335566665554431000 000
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 453 VWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 453 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
....-+.--+..++ ...+.+-+++.+++-- ...+.-++.|.+..++..++++|..-.+
T Consensus 382 klAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 382 KLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000111111111 1222333444444321 2344556778888888888888876554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00031 Score=82.06 Aligned_cols=414 Identities=10% Similarity=-0.001 Sum_probs=234.2
Q ss_pred HHHhcCcchHHHHHHHHHHhCCC--C-C----hhhhhHHHHhhhcCCC--CChHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 035659 45 IKQCKNIKQLKQIHTQMLRTGLF--F-D----PYSASKLFTPCALGTF--SSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115 (655)
Q Consensus 45 l~~~~~~~~~~~~~~~~~~~g~~--~-~----~~~~~~ll~~y~~~g~--~~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 115 (655)
+.+.....+..++.+.+.+.|+. + + .+-+..|+.-+.+... ...++.. ..+......+..
T Consensus 285 ~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~-----------~lh~raa~~~~~ 353 (903)
T PRK04841 285 IVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELP-----------ELHRAAAEAWLA 353 (903)
T ss_pred HHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHH-----------HHHHHHHHHHHH
Confidence 33333344446677777777752 1 1 2445666655443210 0111111 112333445666
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcchHHHHH----HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI----KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.|++.+|....... +|......++ ......|+.+.+...+..+.......+..........+...|+++
T Consensus 354 ~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 354 QGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred CCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 77777666655444 1211111222 223445666666666555422111222333344455566778888
Q ss_pred HHHHHHhhcCC----CC---e-----eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCc
Q 035659 192 MAYCVFVMIGK----KD---V-----VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE----VTMVAVLSACAKKRD 255 (655)
Q Consensus 192 ~A~~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~ 255 (655)
+|...++.... .+ . .....+...+...|++++|...+++..+.-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 88877765421 11 1 11122334456788999999888887653111121 233445555667788
Q ss_pred cccCCChHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC---CchhhHHHHH
Q 035659 256 LEFGRWPNEALSIFHELQLS----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GIK---LNCYLTTSLI 324 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~---~~~~~~~~li 324 (655)
++ +|...+.+.... +...+...++..+..++...|+++.|...+++.... +.. .....+..+.
T Consensus 507 ~~------~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 507 LA------RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HH------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 65 787777776532 101111234555666778899999999988877652 211 1233455566
Q ss_pred HHHHhcCCHHHHHHHHhhcCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHH-----HHH
Q 035659 325 DMYTKCGNLDKALEVFHTVKS------R--DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PNAVTFT-----NVL 390 (655)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~-----~ll 390 (655)
..+...|++++|...+.+... + ....+..+...+...|+.++|.+.+.+....... .....+. ..+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 677778999999888877532 1 1234445566778899999999998887542111 1111111 112
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-hhHHHHHHH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG-ASVWGALLG 459 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~ 459 (655)
..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3345578999999988776532 11111 011345667788899999998888775 22222 245666677
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++...|+.++|...+.+++++...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 888999999999999999987643
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=4.7e-06 Score=92.23 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=167.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+-+...|-..+......+++++|++++++.... -.-.|.++++.-...|.-+...++|+++.+- .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667888888888999999999999887542 2457888888888888888899999999873 333456
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---ChhHHHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP---GASVWGALLGAC 461 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 461 (655)
|..|...|.+.+..++|.++++.|.++++ ....+|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888889999999999999999998766 56678999999999999999999999875 3223 345556666677
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
.++|+.+.+..+|+.++...|.-...|+..+++-.+.|..+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999987754
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1.8e-06 Score=84.57 Aligned_cols=219 Identities=15% Similarity=0.075 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC-CC----ChhHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-SR----DVFVWSTMIA 356 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~ 356 (655)
.....-+.+++..+|+.+.+. .++.+.. .|.......+...+...++-+.+..-+++.. +. +.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556677778888766433 3343333 5665555555544444356666666665543 22 1122222223
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH----HHHhc
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD----MLGRA 432 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~----~~~~~ 432 (655)
.+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+.. .+.-.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCc
Confidence 455679999999988643 3556666778889999999999999999974 34443 3333333 33334
Q ss_pred CCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc-hhHHHHHH
Q 035659 433 GLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW-DNVSELRK 509 (655)
Q Consensus 433 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 509 (655)
+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 4799999999998 44578889999999999999999999999999999999999999999999999998 56777888
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
.++..
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 87763
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00023 Score=83.17 Aligned_cols=326 Identities=12% Similarity=0.042 Sum_probs=210.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCC------CCCHh--hHHHHHHHH
Q 035659 183 FYAICGDLAMAYCVFVMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEMENV------KPDEV--TMVAVLSAC 250 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~ 250 (655)
.....|+++.+..+++.++. .+..........+...|++++|..++....+.-- .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456778888888877642 2333334455566778999999999987754311 11111 112222344
Q ss_pred hccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCchhhHH
Q 035659 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GI-KLNCYLTT 321 (655)
Q Consensus 251 ~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 321 (655)
...|+++ +|...+++..... -..+. ...+.+...+...|+++.|...+.+.... |- .....+..
T Consensus 463 ~~~g~~~------~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 463 INDGDPE------EAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HhCCCHH------HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 5677755 9999998876532 11121 23455556677899999999999888753 21 11234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHH
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKS-------R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEA--KVKPN--AVTF 386 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~ 386 (655)
.+...+...|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 677788899999999998876542 1 1223445556677789999999999887653 11122 2334
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCh----hHHH
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-----TCMVDMLGRAGLLDEAVEFIEKMPIV--PGA----SVWG 455 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~ 455 (655)
..+.......|+.++|...+...............+ ......+...|+.+.|.+++...... ... ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 445556778999999999988875421111111111 11224456689999999998776211 111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 456 ALLGACKIHENVELAEYACSHLLELE------PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+..++...|+.++|...++++++.. +....++..++.+|...|+.++|.+.+.+..+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56677888999999999999998753 1123467788899999999999999999887644
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.5e-07 Score=58.63 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201 (655)
Q Consensus 169 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 201 (655)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=0.00024 Score=73.99 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=153.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
.+-.....+.+|+.+++.+..... -..-|..+.+.|+..|+++ .|.++|.+.- .++-.|..|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe------~ae~lf~e~~----------~~~dai~my 801 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE------IAEELFTEAD----------LFKDAIDMY 801 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH------HHHHHHHhcc----------hhHHHHHHH
Confidence 344455666666666666655422 2233555666666666654 6666654321 234455566
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (655)
.+.|+++.|.++-.+. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. .|..|-++|..+..+++..
T Consensus 802 ~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred hccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHH
Confidence 6777776666654443 23334445555555555666777777777666666653 3566777777777666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC----
Q 035659 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV---- 448 (655)
Q Consensus 373 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---- 448 (655)
+-.... -..|-..+..-+...|++..|...|-+.. -|.+-+++|...+.+++|.++-+.-+-.
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k 941 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEK 941 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence 443211 13455556667788899999988876653 3567788898999999998887664311
Q ss_pred CChhHHHHH------HHHHHhcCCHHHHH-------------HHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 449 PGASVWGAL------LGACKIHENVELAE-------------YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 449 p~~~~~~~l------l~~~~~~g~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.-...|.-- +..+-++|-.+.|. .+.+-..+- .-+.....++.-+...|++++|-+-+-
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhH
Confidence 012233221 12234455444443 333332222 223556677777888999999977766
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
+..+.
T Consensus 1020 eaikl 1024 (1636)
T KOG3616|consen 1020 EAIKL 1024 (1636)
T ss_pred HHhhc
Confidence 55443
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.1e-07 Score=57.94 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=22.6
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566677777777777777777777777776663
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.2e-05 Score=71.22 Aligned_cols=302 Identities=14% Similarity=0.063 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH-HHHHHhc
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA-VLSACAK 252 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 252 (655)
+.+.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455566667777888888887666553 4556777788888888888888888877654 343333321 1223333
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA--CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
.+.+. +|+.+...|... |+...-..-+.+ ....+++-.++.+.++.... -+..+.+...-...+.
T Consensus 91 A~i~A------DALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 91 ACIYA------DALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred hcccH------HHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 34433 666666555321 221111111111 22334444444444443321 1222333333334455
Q ss_pred CCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 331 GNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
|+++.|.+-|+...+- ....||..+.. .+.|+++.|+++..+++++|++-.+. ++. |...++.. .
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiD-v 226 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGID-V 226 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCc-h
Confidence 5555555555554431 23344443332 23455555555555555555442111 100 00000000 0
Q ss_pred HHcchhcCccCCcc-------hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVK-------HYTCMVDMLGRAGLLDEAVEFIEKMP----IVPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 407 ~~~~~~~~~~p~~~-------~y~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
+.+ | .|-.. .+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-++
T Consensus 227 rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 227 RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQ 300 (459)
T ss_pred hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHH
Confidence 000 0 00011 22233344668899999999999995 34577777665433 23456777778888
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 476 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
-+++++|-...++..+.-.|++..-++-|..++-+
T Consensus 301 FLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 301 FLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88889987788999999999999999999888754
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=1.1e-05 Score=77.52 Aligned_cols=182 Identities=14% Similarity=0.041 Sum_probs=117.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DV---FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTF 386 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 386 (655)
.....+..+...|.+.|++++|...|+++... +. ..|..+...|.+.|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556667777778888888888888776542 11 35666777788888888888888888764221111 133
Q ss_pred HHHHHHHHcc--------CcHHHHHHHHHHcchhcCccCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 387 TNVLCACSHS--------GLVDEGRMFFNQMEPVYGVVPGVK-HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 387 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3344444433 6677777777777643 34422 12111111 0011100 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 458 LGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...+...|++++|...++++++..|++ +.++..++.+|.+.|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566888999999999999999987654 468899999999999999999998887664
No 106
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=7.1e-05 Score=74.33 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=159.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh-
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCG- 364 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~- 364 (655)
..+...+..++|..+..++++.. +-+..+|+....++.+.| ++++++..++++.+ ++..+|+...-.+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 33445577888999999988864 445567777777777777 67999999988764 4556787766666666653
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc---CCH----H
Q 035659 365 -REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---GLL----D 436 (655)
Q Consensus 365 -~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---g~~----~ 436 (655)
++++.+++++.+... -|...|.....++.+.|+++++++.++.+.+. . .-+...|+....++.+. |.. +
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 678899999988543 36778888888888899999999999999864 2 33456666666555554 323 4
Q ss_pred HHHHHHHh-CCCCC-ChhHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------
Q 035659 437 EAVEFIEK-MPIVP-GASVWGALLGACKIH----ENVELAEYACSHLLELEPENHGALVLLSNIYAKTG----------- 499 (655)
Q Consensus 437 ~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 499 (655)
+++++..+ +...| |...|+.+...+... ++..+|..++.++.+.+|.++.+...|+..|+...
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 56666644 34445 578999999998874 44577999999999999999999999999998643
Q ss_pred -------CchhHHHHHHHH
Q 035659 500 -------KWDNVSELRKHM 511 (655)
Q Consensus 500 -------~~~~a~~~~~~m 511 (655)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777776
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=7.3e-06 Score=71.57 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P 446 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~ 446 (655)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 34543 44556667788888888888888764 344 4667777888888888888888888876 3
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 447 IVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 447 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
..| +...|..+..++...|++++|+..++++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56778888888888888888888888888888888887777666554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00011 Score=76.98 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=178.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
++|--..-..+...+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556667888999999999999999875 4688899999999999999998888777 37888888888887
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
.....-++ +|.++++..... .-..+.....+.++++++.+.++.-.+.+ +....+|-.+.-++.+
T Consensus 467 ~~d~s~yE------kawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 467 LHDPSLYE------KAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred ccChHHHH------HHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 77666654 888888775432 11111111234688899998888877764 4567788888888889
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
+++++.|.+.|..... | +..+||.+-.+|.+.++..+|...+++..+.+ .-+-..|...+....+.|.+++|++.+
T Consensus 532 lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999988753 3 56789999999999999999999999998876 334445555666678889999999998
Q ss_pred HHcchhcCccCCcchHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
.++........|..+...++...
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHH
Confidence 88876533344555555555443
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=2.1e-05 Score=72.67 Aligned_cols=146 Identities=10% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -..+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456677777665444432221 11 0 112255667777777666542 234577888888888899999
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGAC-KIHEN--VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++|...|++. ...| +...+..+..++ ...|+ .++|..+++++++.+|++..++..++..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998888886 4445 466777777763 56676 58999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87753
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0047 Score=63.52 Aligned_cols=381 Identities=14% Similarity=0.069 Sum_probs=201.0
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~ 155 (655)
=.+|+.-..+..++|...++...+-+..+...-...+-+.|++++|+++|+.+ ...+..- |...-..++.+-.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHH-----
Confidence 44555444447888888877555444444444455667778888888888877 3332211 1111111111111
Q ss_pred hHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCCee----------HHHHHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDD--LFISNSLIHFYAICGDLAMAYCVFVMI--------GKKDVV----------SWNSMISGF 215 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~ 215 (655)
+... ..+......|+ -..+-.....++..|++.+|+++++.. .+.|.. .---|.-.+
T Consensus 158 --~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 158 --ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred --hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111 01222222221 122223445677889999999999877 221111 122355567
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC---------CCCCHH
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDE---VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN---------VNPDEF 283 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~---------~~p~~~ 283 (655)
...|+.++|..++...+.... +|. .+...=|-+.....++..+ .++..++....... -.-..+
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~----~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDG----DLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 788999999999999988753 333 2222223333333333211 23333332221100 000111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhcCCC----ChhHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK-CGNLDKALEVFHTVKSR----DVFVWSTMIAGF 358 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 358 (655)
..|..+-.+ -.+..+.+.++-.... +..|....-+.+..++-. .....+|.+++....+. ..+..-.++...
T Consensus 310 ~~N~~lL~l-~tnk~~q~r~~~a~lp--~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 310 YRNNALLAL-FTNKMDQVRELSASLP--GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHhCC--ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 111111111 1223333333332221 122333333333333322 22466777777666543 345666777888
Q ss_pred HHcCChHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc-cCCcchHHHH----
Q 035659 359 AMYGCGREALDLFS--------RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV-VPGVKHYTCM---- 425 (655)
Q Consensus 359 ~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~y~~l---- 425 (655)
...|+++.|++++. ...+.+..|-.+. .+...+.+.++-+.|..++.+...-+.. .+......++
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 88999999999988 5666566665554 4555567777766677777666543322 1222333333
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+..-.+.|+-++|..+++++ . ..+|..+...++.+|+.. +.+.|+.+-.++
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 34445779999999999987 3 345677888888888764 577777666554
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.0012 Score=63.06 Aligned_cols=300 Identities=10% Similarity=0.045 Sum_probs=166.1
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHH---HHHccCCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHH
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK---AAARLVQFRVGQAIHGMVIKSSFEDDLFI-SNSLIHFYA 185 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~ 185 (655)
-..+.-+|++.+|+.-|... +.-|+..|.++.+ .|...|+...|..=+..+++. .||-.. ..--...+.
T Consensus 45 Gk~lla~~Q~sDALt~yHaA-----ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAA-----VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHH-----HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 34445556666666666665 1224444444432 345556666666666666554 344221 111224566
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
|.|.+++|..=|+.+.+.+..- +....++.+.-..++-..+ ...+..+...|+.. .|
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~------~a 174 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ------NA 174 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh------hH
Confidence 7778888877777765532210 1111111111111111111 12222333444433 55
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
++....+.+.. +.|...+..-..+|...|++..|..=+..+.+.. ..+....--+-..+.+.|+.+.++...++..+
T Consensus 175 i~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66666555532 4455555555666666666666665555555443 22333444455556666666666666665543
Q ss_pred CChh------HHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCcHHHHHHHHH
Q 035659 346 RDVF------VWSTM---------IAGFAMYGCGREALDLFSRMQEAKVKPNAVT---FTNVLCACSHSGLVDEGRMFFN 407 (655)
Q Consensus 346 ~~~~------~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~ 407 (655)
-|.. .|..+ +......++|.++++..+...+.......++ +..+-.++...|.+.+|++.-.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2221 11111 1234557788888888888877433322333 3344455677899999999999
Q ss_pred HcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 408 QMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 408 ~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
++. .+.|+ +.++.--..+|.-..++++|+.-|+..
T Consensus 332 evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 332 EVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887 45666 778888888999899999999999887
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.001 Score=67.46 Aligned_cols=390 Identities=14% Similarity=0.075 Sum_probs=239.8
Q ss_pred hcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCC-cchHHHHHHHHHccCCch
Q 035659 81 ALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFR 156 (655)
Q Consensus 81 ~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~ 156 (655)
...| +++.|+..|.... .+|-+.|+.-..+|+..|++++|++=-.+- ..+.|+ .-.|+-...++...|+++
T Consensus 13 ~s~~--d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSG--DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccc--cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456 9999999997643 468888999999999999999998765544 335666 346888888899999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh------hcCC-C------CeeHHHHHHHHHHhC-----
Q 035659 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV------MIGK-K------DVVSWNSMISGFVQG----- 218 (655)
Q Consensus 157 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------~~~~-~------~~~~~~~li~~~~~~----- 218 (655)
+|..-+..-++.. +.+...++.|.+++.-. ..+.+.|. .... | .-..|..++..+-++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999888774 55677788888887211 11111111 1100 0 112344444333221
Q ss_pred -----CChhHHHHHHHHH-----HHCC-------CCCC----------------------HhhHHHHHHHHhccCccccC
Q 035659 219 -----GFFEKAIELYREM-----EMEN-------VKPD----------------------EVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 219 -----g~~~~A~~~~~~m-----~~~g-------~~p~----------------------~~t~~~ll~~~~~~~~~~~~ 259 (655)
.+...|...+... ...| ..|. ..-...+.++..+..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~---- 239 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD---- 239 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh----
Confidence 1111221111110 0001 1110 0112223333333333
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------hhhHHHHHHHHHhcCCH
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN------CYLTTSLIDMYTKCGNL 333 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~ 333 (655)
++.|++-+..... +.-+..-++....++...|...+....-...++.|...- ......+..+|.+.+++
T Consensus 240 --f~~a~q~y~~a~e---l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 240 --FETAIQHYAKALE---LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred --HHHHHHHHHHHHh---HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 3367777766654 343333455556668888888888777777766653211 11222244577888899
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 334 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
+.|...|.+...+... -....+....++++.......- +.|.. .-...-...+.+.|++..|...|.++++.
T Consensus 315 ~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999999885432111 1112223344555555444433 33432 11222245678899999999999999874
Q ss_pred cCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 413 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+-|...|..-.-+|.+.|.+.+|++=.+.. ...|+ ...|..=..++....+++.|.+.|++.++.+|.+......
T Consensus 388 --~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 388 --DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred --CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 2446889999999999999999998866654 34454 3455555666777789999999999999999988776666
Q ss_pred HHHHHHh
Q 035659 491 LSNIYAK 497 (655)
Q Consensus 491 l~~~~~~ 497 (655)
+..++..
T Consensus 466 ~~rc~~a 472 (539)
T KOG0548|consen 466 YRRCVEA 472 (539)
T ss_pred HHHHHHH
Confidence 6666554
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.0001 Score=82.19 Aligned_cols=227 Identities=11% Similarity=0.149 Sum_probs=174.3
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHH
Q 035659 279 NPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIK---LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--DVFVW 351 (655)
Q Consensus 279 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 351 (655)
.|| ...|-.-|.-....++.+.|+++.++++.. ++. --..+|.+++++-..-|.-+...++|++..+- ....|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 354 557778888889999999999999998863 221 12457888888888889999999999998763 34678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDM 428 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~ 428 (655)
..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+. -|. .....-.+.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 99999999999999999999999875 3456778999999999999999999999998863 344 3445556677
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHH-hcCCchh
Q 035659 429 LGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYA-KTGKWDN 503 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~-~~g~~~~ 503 (655)
-.+.|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|++++.+. |.....++-.=--|. ..|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78999999999999986 222346789999999999999999999999999987 444333333222333 3355444
Q ss_pred HHHHHH
Q 035659 504 VSELRK 509 (655)
Q Consensus 504 a~~~~~ 509 (655)
++.+-.
T Consensus 1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred HHHHHH
Confidence 444433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=9.8e-06 Score=70.76 Aligned_cols=107 Identities=15% Similarity=-0.000 Sum_probs=91.1
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 23455 4566788899999999999999986 4445 57899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 482 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
|.++.++..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987743
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=5e-05 Score=83.10 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHhccCCHHHH-HHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----HHHHHHHHhhcCCCChhHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIG-VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN----LDKALEVFHTVKSRDVFVWSTMI 355 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li 355 (655)
+......+=.+.+..|.-+++ .+++.++.+ ++...+.... +.++..+..... .++..+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHH
Confidence 333444444456677765554 666666654 2222222222 222222222221 3577888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcC
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAG 433 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g 433 (655)
....+.|+.++|..+++...+ +.||. .....+..++.+.+.+++|....++... ..|+ ......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998 57765 4556677789999999999999999875 3555 566777888899999
Q ss_pred CHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 434 LLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 434 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 999999999997 22344 6789999999999999999999999999987544444443
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.012 Score=63.70 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 035659 453 VWGALLGACKIHENVE---LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 519 (655)
+-+.|+..|++.++.. +|+-+++..+...|.|...-..|+.+|+-.|-+..|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 3466778888887754 677788888888999999999999999999999999999998876655443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=4.4e-05 Score=79.73 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=146.8
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
++|--..-..+.+.+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4455556667888899999999999999975 4688889999999999999999888877 57899999999888
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~g~~~~a 470 (655)
.....-+++|.++++....+ .-..+.....+.++++++.+.++. +.+.|- ..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88878888999888876542 001111122346788888888876 344443 56788888888888888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+.|.....++|++...|+.++.+|.+.|+-.+|...+++..+-.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888888888888888888888888888888888888877655
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.22 E-value=0.00023 Score=76.95 Aligned_cols=353 Identities=13% Similarity=0.065 Sum_probs=193.2
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----eeHHHHHHHHH
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD-----VVSWNSMISGF 215 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~ 215 (655)
.|..|...|....+...|.+.|..+.+.. ..|...+.++.+.|++..+++.|..+.-...+.+ ...|--..-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45566666665556666777777776654 4566677778888888888888877744333322 12333444556
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHh
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL--SACA 293 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll--~~~~ 293 (655)
.+.++..+|+.-|+...... +-|...|..+..+|...|.+. .|+++|.+... +.|+.. |...- ..-+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~------~AlKvF~kAs~---LrP~s~-y~~fk~A~~ec 641 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYS------HALKVFTKASL---LRPLSK-YGRFKEAVMEC 641 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCcee------hHHHhhhhhHh---cCcHhH-HHHHHHHHHHH
Confidence 67777788887777776543 235667888888888888877 88888887765 556533 22221 1245
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH-------HhcCCHHHHHHHHhhcC-------C----CChhHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY-------TKCGNLDKALEVFHTVK-------S----RDVFVWSTMI 355 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~-------~----~~~~~~~~li 355 (655)
..|...++...++.++... ..-....+.+...+ .-.|-..+|...|+.-. . .+...|-.+-
T Consensus 642 d~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 6788888888777776531 11111122222222 22232333333333211 1 1233333332
Q ss_pred HHHH---HcC--ChH-HHHHH-HHHHHHcCCCCC--------------------HHHHHHHHHHHHc-------c-CcHH
Q 035659 356 AGFA---MYG--CGR-EALDL-FSRMQEAKVKPN--------------------AVTFTNVLCACSH-------S-GLVD 400 (655)
Q Consensus 356 ~~~~---~~g--~~~-~A~~~-~~~m~~~g~~p~--------------------~~t~~~ll~a~~~-------~-g~~~ 400 (655)
.++. +.. .+. ..+.+ +.+....+.-|+ ..+|..+...+.+ . .+..
T Consensus 721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 2221 111 000 00111 111211111111 1222222221111 1 1223
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.|...+...++ +..+ ...|+.| ..+...|.+.-|..-|-+- ..+....+|..+...|.+..+++.|..+|.++
T Consensus 801 ~Ai~c~KkaV~---L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 801 TAIRCCKKAVS---LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHH---HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 44444444442 2233 2333333 3334445555555544332 22334678888888888899999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..++|.|...|...+.+-...|+.-++..+|..
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999998888887777888888787777765
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=0.0001 Score=70.79 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh---
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVF--- 349 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--- 349 (655)
......+..+...+...|+++.|...++++.+.. +.+ ...+..+..+|.+.|++++|...|+.+.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998854 222 246778899999999999999999998642 222
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 350 VWSTMIAGFAMY--------GCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 350 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
.+..+...+.+. |+.++|.+.|+++... .|+.. ....+... . .... .. . .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~~~------~~-~--------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YLRN------RL-A--------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HHHH------HH-H--------H
Confidence 455555666654 7789999999999885 45543 22211111 0 0000 00 0 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
....+...|.+.|++++|...+++. |-.| ....|..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1235667788999999999988886 2223 246888999999999999999998888776554
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=3.7e-05 Score=66.04 Aligned_cols=119 Identities=10% Similarity=0.055 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
....-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999887 3344 46788999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 035659 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 560 (655)
..|+.+.|.+.|+...... ..+|+..++.+++...++.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999887642 1245666777777777666653
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.2e-06 Score=53.48 Aligned_cols=35 Identities=37% Similarity=0.759 Sum_probs=33.0
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00011 Score=74.95 Aligned_cols=245 Identities=15% Similarity=0.087 Sum_probs=178.7
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
-+.+.|++. +|.-.|+...+.. +-+...|.-|...-...++-..|...+.+..+.. +-+..+.-+|.-.|.
T Consensus 294 ~lm~nG~L~------~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 294 NLMKNGDLS------EAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYT 364 (579)
T ss_pred HHHhcCCch------HHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHh
Confidence 345667766 8888898887764 5567788888888888889999999999999875 556788888999999
Q ss_pred hcCCHHHHHHHHhhcCC-CChhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccC
Q 035659 329 KCGNLDKALEVFHTVKS-RDVFVWSTMI---------AGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSG 397 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g 397 (655)
..|.-..|.+.|+.=.. .-...|...- ..+..........++|-++. ..+.++|......|--.|.-.|
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999988876321 0000000000 11112222345556666654 4453456666666666688899
Q ss_pred cHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYAC 474 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 474 (655)
.+++|...|+.+.. ++|+ ...||-|...++...+.++|+..|++. .++|+ +.++..|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999984 5675 678999999999999999999999986 78898 568899999999999999999999
Q ss_pred HHHhccCCCC----------cchHHHHHHHHHhcCCchhHH
Q 035659 475 SHLLELEPEN----------HGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 475 ~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~a~ 505 (655)
-.++.+.+.+ ...|..|=.++.-.++.|.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9998875431 135555555555556555443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00036 Score=77.29 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=100.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 345677777777777778877777765443 32 33444444456666665555444 22 222
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
.....++. -...+...|.. ..-+...+..+..+|.+.|+.+++.++++++++.. +-|+.+.|.+...|+.
T Consensus 93 ~~~~~~~~------~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 93 FSQNLKWA------IVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred cccccchh------HHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 22222221 22222233332 23344567777777778888888888888887776 5667777777777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 035659 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (655)
. ++++|++++.+. +..|...+++.++.++|.++...
T Consensus 163 ~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 163 E-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred h-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 7 777777776553 23366666777777777777763
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0018 Score=59.90 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
+.+.+.......+......-...|+..|++++|.+..+....-+....+ ...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444333333333333344567777777777777663322222222 33445556667777777777652 245
Q ss_pred HHHHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 384 VTFTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 384 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+....+....|++++|..+++.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 555555555433 2334555555555543 2334444444444444444444444444444
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.013 Score=62.42 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=118.0
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC-----------CCcchHHHHHHH-HHhCCCcHHHHHHHHHhhhcCCC
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-----------PNLYTWNTLIRA-YSSSAEPIQSFMIFLQLVYNSPY 135 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~-----------~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~ 135 (655)
-+..+|..+.+||.+.. +++-|.-.+-.|.+ .|..--.+-..+ -...|..++|..+|++- ++
T Consensus 755 kS~~vW~nmA~McVkT~--RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~c-kR--- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTR--RLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQC-KR--- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhc--cccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHH-HH---
Confidence 35668999999999988 88888777766652 111111112222 24568899999999988 43
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK------------- 202 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------- 202 (655)
|..|=+.|...|.|++|.++-+.--+..+. .+|-....-+-..++.+.|++.|++...
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 445556677789999999886643332222 2444455555567788888888876542
Q ss_pred ----------CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHH
Q 035659 203 ----------KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272 (655)
Q Consensus 203 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m 272 (655)
+|...|.-....+-..|+.+.|+.+|....+ |-++++..+-.|+.+ +|-.+-++
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~------kAa~iA~e- 963 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTD------KAARIAEE- 963 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCch------HHHHHHHh-
Confidence 2333444444444455666666666655443 344444445555544 44444322
Q ss_pred HHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 035659 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308 (655)
Q Consensus 273 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 308 (655)
.| |....-.+...|-..|++.+|..+|.++
T Consensus 964 --sg----d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 964 --SG----DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cc----cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 3334444555555555555555555444
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00021 Score=65.98 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=109.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 403 (655)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777766654443322211 01112456677777777777643 446777888888888999999999
Q ss_pred HHHHHcchhcCccC-CcchHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 404 MFFNQMEPVYGVVP-GVKHYTCMVDM-LGRAGL--LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 404 ~~~~~~~~~~~~~p-~~~~y~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988874 345 46677777776 467777 58999999886 4445 4678888888999999999999999999
Q ss_pred hccCCCCcchHH
Q 035659 478 LELEPENHGALV 489 (655)
Q Consensus 478 ~~~~p~~~~~~~ 489 (655)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=7.2e-05 Score=69.01 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhc
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIH 464 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 464 (655)
..+-.++...|+-+.+..+...... ....|......++....+.|++.+|+..+++. +-.+|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4444556666666666666665432 22233344455666777777777777777775 3345667777777777777
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
|+.++|...+.+++++.|.++..++.|+..|.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777777777777777777776655543
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00034 Score=64.62 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
.+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++.... -++|...|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 334444444544444444444221 23334444455555555555555555555442 23344455555555555555
Q ss_pred HHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 399 VDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
.++|..-|.+..+. .| ++..++.|.-.|.-.|+++.|..++...- -..|..+-..|.-.....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555554432 22 23344444444444555555555544431 11133444444444444555555544443
Q ss_pred H
Q 035659 476 H 476 (655)
Q Consensus 476 ~ 476 (655)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 129
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.0018 Score=64.36 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH--HHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDE-FTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL--DKALEV 339 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~ 339 (655)
+|+.+..++.. +.|+. .+|+.--.++...| +++++...++.+.+.+ +.+..+|+.....+.+.|+. +++..+
T Consensus 55 rAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 55 RALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45555555444 22322 23333333333444 3455555555555543 23334444444344444432 444555
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---Cc----HHHHHHHHHHc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS---GL----VDEGRMFFNQM 409 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~a~~~~~~~ 409 (655)
++.+.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++..++...+
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 544432 35556666666666666666777777766665432 334444433333332 11 23455555444
Q ss_pred chhcCccCCcchHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC------------------
Q 035659 410 EPVYGVVPGVKHYTCMVDMLGRA----GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE------------------ 465 (655)
Q Consensus 410 ~~~~~~~p~~~~y~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g------------------ 465 (655)
+.. ..-|...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 210 I~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 210 ILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 431 122355666666666552 3344566665554 2223 3445555666655421
Q ss_pred CHHHHHHHHHHHhccCC
Q 035659 466 NVELAEYACSHLLELEP 482 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p 482 (655)
..++|.++++.+.+.+|
T Consensus 288 ~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 288 DSTLAQAVCSELEVADP 304 (320)
T ss_pred cHHHHHHHHHHHHhhCc
Confidence 23567777777655555
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.0008 Score=73.90 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=124.3
Q ss_pred HhccCCHHHHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHH
Q 035659 292 CAQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 366 (655)
..+.+.+..+.+-+-++.. ...+.++..+-.|.....+.|.+++|+.+++...+ | +...+..+...+.+.+++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHH
Confidence 3444555544444444433 33566788999999999999999999999999875 3 56678888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 367 ALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
|+..+++.... .|+. .....+..++.+.|.+++|..+|+++... .|+ ...+..+...+...|+.++|...|++
T Consensus 139 A~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 139 GRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999984 5654 44556666789999999999999999862 343 67888999999999999999999998
Q ss_pred C--CCCCChhHHHHHH
Q 035659 445 M--PIVPGASVWGALL 458 (655)
Q Consensus 445 m--~~~p~~~~~~~ll 458 (655)
. ...|...-|+.++
T Consensus 214 a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 214 GLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHhhCcchHHHHHHH
Confidence 6 2234445555444
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.5e-06 Score=51.70 Aligned_cols=35 Identities=34% Similarity=0.611 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00016 Score=73.22 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
-..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456677778889999999999999864 354 5566888888889999999999886 2233 5566666667789
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++++.|+.+++++.+..|.+..+|..|+.+|...|++++|...++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999998764
No 133
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.02 E-value=0.018 Score=57.15 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
+.+..+.-+...|+...|.++-.+..-+|...|-..+.+|+..++|++-.++... +-.++-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4444556667788889999998888888888899999999999999877765432 1234778888888888999
Q ss_pred HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 035659 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 461 (655)
..+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 98888887763 22466788889999998887766553 555555444444
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=50.51 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=32.0
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (655)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.021 Score=58.32 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 035659 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180 (655)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 180 (655)
-|+.+|+.||+-+-.. ..+++.+.+++++ . -.+-....|..-|..-.+..+++..+.+|.+.+..-+ ++..|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~-~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV-N-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh-c-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 3788899999877655 8888999999882 2 1233455667777777788888888888888776643 35555555
Q ss_pred HH
Q 035659 181 IH 182 (655)
Q Consensus 181 i~ 182 (655)
++
T Consensus 93 l~ 94 (656)
T KOG1914|consen 93 LS 94 (656)
T ss_pred HH
Confidence 54
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=6.5e-05 Score=65.04 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556667777788888888888775 3333 466777778888888888888888888888888888888888888888
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777664
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00059 Score=68.58 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNV-LCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~ 435 (655)
+...|+.++|+..++.+... .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+..+|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 33445555555555554442 3333333222 2234455555555555555542 2333 33334444455555555
Q ss_pred HHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHH
Q 035659 436 DEAVEFIEKM--PIVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 436 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
.+|+.+++.. ..+.|+..|..|..+|...|+..++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 5555555443 2222344555555555555554444
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.0016 Score=65.51 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=72.6
Q ss_pred HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
....|.+++|+..++.+... .| |+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456667777777666542 33 3444455566667777777777776665 34455 4556666666777777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
|+..++.....+|+|+..|..|+.+|...|+..++...+.++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777777777667777777777666666666665555555444
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.6e-05 Score=48.83 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
.+|+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.0004 Score=70.46 Aligned_cols=126 Identities=11% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 399 (655)
..+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..... +-|...+..-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455556667888888888888888777777778888888888888888888888642 22445555555567888889
Q ss_pred HHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 035659 400 DEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p 449 (655)
+.|+.+.+++.+ ..|+ ..+|..|...|.+.|++++|+..++.+|.-+
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999988874 4565 5688889999999999999999998887543
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.84 E-value=0.0034 Score=69.87 Aligned_cols=282 Identities=8% Similarity=-0.020 Sum_probs=181.5
Q ss_pred CCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHH
Q 035659 134 PYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212 (655)
Q Consensus 134 ~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 212 (655)
++.| +...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 3444 45567888888889999999999999777663 33344444444477777776666544 344
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
..+....++.-+..+...|.+. .-+...+-.+..+|.+.|+.+ +|...++++.+.. +-|....|.+.-.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~------ka~~~yer~L~~D--~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENK------KLKGVWERLVKAD--RDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChH------HHHHHHHHHHhcC--cccHHHHHHHHHHH
Confidence 4444444553344444445443 223446778888899999976 9999999998864 55677888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (655)
+.. ++++|++++.+++.. |...+++..+.+++.++..-++. +++.-..+.+
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ 211 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIER 211 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHH
Confidence 888 999999999888764 66677888999988888765443 2233334444
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCC
Q 035659 373 RMQEA-KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA-GLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 373 ~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p 449 (655)
++..+ |..--..++.-+-..|...++++++..+++.+.+ ..| |.....-+++.|... +......+.++.-++
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l-- 286 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDI-- 286 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcc--
Confidence 44433 3333445566666778888899999999999885 334 344455555555421 111112222222122
Q ss_pred ChhHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCc
Q 035659 450 GASVWGALLGACKIH-ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 485 (655)
... .++..++.-|++.+..++.+.
T Consensus 287 ------------~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 287 ------------GNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred ------------ccCCccHHHHHHHHHHHeeecCCCE
Confidence 222 456778888888887776654
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0031 Score=57.99 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=117.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 397 (655)
..++-+...+|+.+.|..+++.+..+-..++.... .-+-..|++++|+++++...+.. +.|.+++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444445567777777777766543222222221 12345788899999999988875 446777777676777778
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHh---cCCHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKI---HENVELAEY 472 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~~ 472 (655)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|- ...+..+...+.. ..+.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888887776 45678889999999999999999999999997 33443 4455555555433 347789999
Q ss_pred HHHHHhccCCCCcchHHHH
Q 035659 473 ACSHLLELEPENHGALVLL 491 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~~~~l 491 (655)
.+.+.+++.|.+...+.-+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999665554443
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.7e-05 Score=47.52 Aligned_cols=31 Identities=42% Similarity=0.807 Sum_probs=27.2
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENV 236 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (655)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.00051 Score=59.33 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 370 LFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 370 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
.|++... ..|+ ......+...+...|++++|...|+.+... ...+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 3443 344555666778889999999998888753 2335677888888888999999999888876 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 448 VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.| +...+..+...+...|+.+.|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 4677888888899999999999999999999987754
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.0003 Score=55.89 Aligned_cols=93 Identities=27% Similarity=0.280 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
.+..+...+...|++++|..++++. ...|+ ...+..+...+...++++.|...++++.+..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3455667778888888888888775 33343 466777788888889999999999999988888888888888999999
Q ss_pred CCchhHHHHHHHHHh
Q 035659 499 GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 g~~~~a~~~~~~m~~ 513 (655)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999888877654
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=5.2e-05 Score=59.27 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHhC-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 432 AGLLDEAVEFIEKM-PIVP---GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777665 1122 345566677777777777777777777 666666666666778888888888888877
Q ss_pred HHH
Q 035659 508 RKH 510 (655)
Q Consensus 508 ~~~ 510 (655)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.006 Score=56.64 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH----
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG---- 430 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~---- 430 (655)
...|...|++++|++...... +-.....=...+.+..+++-|.+.++.|.+- -+..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345777788888887776521 1122222223455667788888888887642 23344554555444
Q ss_pred hcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 431 RAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
-.+.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..+++++.+...++-.-...|+-.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 345688888888888 356777788888888888888888888888888888888888777777777777766553
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00013 Score=54.53 Aligned_cols=64 Identities=23% Similarity=0.207 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CchhHHHHHHHHHh
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG-KWDNVSELRKHMRV 513 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 513 (655)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999887765
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0027 Score=55.57 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~ 436 (655)
.++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4455555555555554321110 111222233445555555555555555543 11111 112223344445555555
Q ss_pred HHHHHHHhCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 437 EAVEFIEKMPI-VPGASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 437 ~A~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
+|+..++..+. ......+......+...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544311 11122333333444444444444444443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0013 Score=57.47 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=90.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALL 458 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll 458 (655)
.|..++... ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47888889888999887532221 1233444567888999999999999987 222443 3455677
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...|++++|+..++.. ...+..+..+..++++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999773 333445667888999999999999999998753
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.3e-05 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.621 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (655)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.001 Score=55.89 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=49.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGAC 461 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 461 (655)
.+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444555555555555555543211100 0223444555555555555555555554 11222 33455555556
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 462 KIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
...|+.++|...++++++..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.00081 Score=56.47 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=81.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLL 491 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 491 (655)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++.+++..|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999887 22333 3466778899999999999999999999988775 4578889
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCC
Q 035659 492 SNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988864
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.53 E-value=0.14 Score=52.49 Aligned_cols=436 Identities=12% Similarity=0.090 Sum_probs=256.2
Q ss_pred CCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--C-CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH
Q 035659 67 FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--P-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143 (655)
Q Consensus 67 ~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~ 143 (655)
+-|..+|+.||.-+... .++++++.++++.. | ....|..-|..-....+++....+|.+. ...- .+..-|.
T Consensus 17 P~di~sw~~lire~qt~---~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RC-Lvkv--LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ---PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRC-LVKV--LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC---CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHH--hhHhHHH
Confidence 34888999999976544 69999999999874 3 4457999999999999999999999998 3332 2444555
Q ss_pred HHHHHHHcc-CCchHHH----HHHHHH-HHhCCCCC-hhHHHHHHHHH---------HhcCCHHHHHHHHhhcCC-C---
Q 035659 144 FVIKAAARL-VQFRVGQ----AIHGMV-IKSSFEDD-LFISNSLIHFY---------AICGDLAMAYCVFVMIGK-K--- 203 (655)
Q Consensus 144 ~ll~~~~~~-~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~f~~~~~-~--- 203 (655)
.-|.-..+. ++....+ +.++.. .+.|+.+- -..|+..+..+ ....+++..+++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 555543332 3333322 233333 34554433 33466666543 344567778888888764 2
Q ss_pred ------CeeHHHHHHHHH-------HhCCChhHHHHHHHHHHH--CCCCCCHhh---------------HHHHHHHHhcc
Q 035659 204 ------DVVSWNSMISGF-------VQGGFFEKAIELYREMEM--ENVKPDEVT---------------MVAVLSACAKK 253 (655)
Q Consensus 204 ------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~ 253 (655)
|-..|..=|... -+...+..|.+++++... .|...+..+ |-.+|.-=...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 222332222211 123456778888887753 243322222 33333221111
Q ss_pred Ccc-ccCCC-hHHHHHHHHHHHHCCCCCCCHHHH-HHHH----HHHhccCC-------HHHHHHHHHHHHHcCCCCchhh
Q 035659 254 RDL-EFGRW-PNEALSIFHELQLSKNVNPDEFTF-VSVL----SACAQLGA-------MDIGVQIHAKMKKQGIKLNCYL 319 (655)
Q Consensus 254 ~~~-~~~~~-~~~A~~l~~~m~~~~~~~p~~~t~-~~ll----~~~~~~g~-------~~~a~~~~~~~~~~g~~~~~~~ 319 (655)
+.- ..+.. .....-.+++....-+..|+.... ...+ +.+...|+ .+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11110 112222333322221244443211 1111 12333343 3455666666655433334445
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 035659 320 TTSLIDMYTKC---GNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLC 391 (655)
Q Consensus 320 ~~~li~~~~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 391 (655)
|.++.+.--.. ...+.....++++.. .-..+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 54444322111 124444455555442 223467777887778888899999999999988888 5555666665
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCC
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHEN 466 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~ 466 (655)
-+ .+++.+-|.++|+.-.+.+|-. +.--...++-+...++-..|..+|++. .+.|| ..+|..+|.--..-|+
T Consensus 411 y~-cskD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YY-CSKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HH-hcCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 44 4689999999999887765433 334567788889999999999999987 23333 5799999999999999
Q ss_pred HHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 467 VELAEYACSHLLELEPEN----HGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
...+.++-++....-|.+ ...-..+...|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999998887765522 122334556666666665544444433
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00032 Score=51.65 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...+...|++++|+..++++++..|.+...+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888888888888877653
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0016 Score=59.01 Aligned_cols=82 Identities=21% Similarity=0.114 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
...|..+...|...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777765 22222 3577788888888899999999999999988888888888888
Q ss_pred HHHhcCC
Q 035659 494 IYAKTGK 500 (655)
Q Consensus 494 ~~~~~g~ 500 (655)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.007 Score=64.51 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=62.9
Q ss_pred CCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CcHHHHHHHHHHcc
Q 035659 345 SRDVFVWSTMIAGFAMYG-----CGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHS--------GLVDEGRMFFNQME 410 (655)
Q Consensus 345 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 410 (655)
..|...|...+.+..... ...+|..+|++..+ ..||. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346667777776644322 25678888888887 45653 3333322222111 11122222222211
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11011112233444433334445555555555443 3344444444445555555555555555555555555443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0012 Score=67.27 Aligned_cols=107 Identities=18% Similarity=0.071 Sum_probs=87.6
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 465 (655)
-...+...|++++|+.+|.++.+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345567789999999999999853 44 4667888889999999999999999887 4455 4678888889999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
++++|+..++++++++|.+......+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988777765554433
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0026 Score=50.90 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHhccCccccC--CChHHHHHHHHHHHHCCCCCCCHHHH
Q 035659 209 NSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMVAVLSACAKKRDLEFG--RWPNEALSIFHELQLSKNVNPDEFTF 285 (655)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~--~~~~~A~~l~~~m~~~~~~~p~~~t~ 285 (655)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+...-... ...-+.+.+|+.|...+ ++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4556667777999999999999999999 99999999999988875432100 00336677778887777 88888888
Q ss_pred HHHHHHHhc
Q 035659 286 VSVLSACAQ 294 (655)
Q Consensus 286 ~~ll~~~~~ 294 (655)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888776643
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.0017 Score=58.60 Aligned_cols=93 Identities=13% Similarity=-0.067 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
...|..+...+...|++++|+..|++. .+.|+ ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456677777788889999999988876 23332 3578889999999999999999999999999988888888888
Q ss_pred HHH-------hcCCchhHHHHHHHH
Q 035659 494 IYA-------KTGKWDNVSELRKHM 511 (655)
Q Consensus 494 ~~~-------~~g~~~~a~~~~~~m 511 (655)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888776666544
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.33 E-value=0.22 Score=50.13 Aligned_cols=431 Identities=11% Similarity=0.073 Sum_probs=228.5
Q ss_pred HHHHHHHHHhCC----CC-ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCC-cchHHHHHHHH--HhCCCcHHHHHHH
Q 035659 55 KQIHTQMLRTGL----FF-DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN-LYTWNTLIRAY--SSSAEPIQSFMIF 126 (655)
Q Consensus 55 ~~~~~~~~~~g~----~~-~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~ 126 (655)
..++..+.+.-- .. .....+.++++|-... ++..........+.. -..|-.+..++ -+.+.+.+|++.|
T Consensus 26 EkifskI~~e~~~~~f~lkeEvl~grilnAffl~n---ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~l 102 (549)
T PF07079_consen 26 EKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN---LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQAL 102 (549)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 556666554421 11 1345677888877543 666655555544322 23355555543 3568888999888
Q ss_pred HHhhhcC--CCCC---C---------cchHHHHHHHHHccCCchHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcC
Q 035659 127 LQLVYNS--PYFP---N---------EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----EDDLFISNSLIHFYAICG 188 (655)
Q Consensus 127 ~~m~~~~--~~~p---d---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g 188 (655)
... ... +..| | -.-=+.....+...|.+.+|+.+++.++..=+ .-+..+||.++-++++.=
T Consensus 103 s~w-~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 103 SVW-KEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHH-HhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 776 332 2222 1 11123445667788999999999888876544 378888888887777542
Q ss_pred CHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHH
Q 035659 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268 (655)
Q Consensus 189 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l 268 (655)
-++ +-+.+...=..-|.-||..|.+.=..-++ -.=..+.|....+..++....-...-. ..--+.+
T Consensus 182 fLE----l~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~----l~~~mq~ 247 (549)
T PF07079_consen 182 FLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER----LPPLMQI 247 (549)
T ss_pred HHH----HHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh----ccHHHHH
Confidence 211 11222222334566666666553221111 111112333333334443333222110 0012223
Q ss_pred HHHHHHCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC----chhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 269 FHELQLSKNVNPDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL----NCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 269 ~~~m~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
+......- +.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+
T Consensus 248 l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 248 LENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333 666633 33444444444 5555555555444332111 1345666777777888888887777655
Q ss_pred CC--CChh-------HHHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHH---HHHccCc-HHHHHHH
Q 035659 344 KS--RDVF-------VWSTMIAGFA----MYGCGREALDLFSRMQEAKVKPNAVT-FTNVLC---ACSHSGL-VDEGRMF 405 (655)
Q Consensus 344 ~~--~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~ 405 (655)
.. |+.. +-..+-+..+ ..-+...-+.+++......+ |..- ...++. -+-+.|. -++|..+
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 42 2211 1111222222 12233344556666655432 3222 122222 2444554 7778888
Q ss_pred HHHcchhcCccCC-cchHHHHH----HHHHhc---CCH---HHHHHHHHhCCCCC----ChhHHHHHHHH--HHhcCCHH
Q 035659 406 FNQMEPVYGVVPG-VKHYTCMV----DMLGRA---GLL---DEAVEFIEKMPIVP----GASVWGALLGA--CKIHENVE 468 (655)
Q Consensus 406 ~~~~~~~~~~~p~-~~~y~~li----~~~~~~---g~~---~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~ 468 (655)
++.+.+ +.+. ...-|.+. ..|..+ ..+ -+-..++++.++.| +...-|.|..| +..+|++.
T Consensus 403 Lk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 403 LKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 887764 2332 22222211 122211 111 12233445555544 34456666666 56889999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
++.-.-.-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999999 88999999999999999999999997653
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.002 Score=60.89 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=73.1
Q ss_pred HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
..+.+++++|...|...++ +.| |...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556778888888887773 455 3555666677788888888887766654 55555 4688888888999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
|++.|+++++++|+|......|-.+--
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999988755554444433
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.021 Score=52.70 Aligned_cols=160 Identities=12% Similarity=0.116 Sum_probs=122.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV-LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
|-.++-+....|+.+.|...++++.+.- |...-...+ ..-+...|.+++|.++++.+.++ -+.|..+|---+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 3344556667889999999999998863 443322222 12256679999999999999875 244567777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc---hhH
Q 035659 430 GRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW---DNV 504 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~a 504 (655)
-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++-..|-++..+..++..+.-.|.. +-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888888888777664 45569999999999999999999999999999999999999999999998776654 446
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.+.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6666655553
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.31 E-value=0.0062 Score=55.05 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYT 423 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~ 423 (655)
....+..+...+...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345667777777778888888888888776433332 345666667777788888888887777642 33 244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 501 (655)
.+..+|...|+...+..-++.. ...+++|.++++++++.+|++ |..+...+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 5666666666655544332221 122678889999999998876 55566666655543
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0029 Score=64.46 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA 432 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~ 432 (655)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|+..++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455678899999999999999853 23566777888889999999999999999985 345 467788899999999
Q ss_pred CCHHHHHHHHHhC-CCCCChhHHHHHHHHH
Q 035659 433 GLLDEAVEFIEKM-PIVPGASVWGALLGAC 461 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 461 (655)
|++++|+..|++. .+.|+......++.-|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5566655554444333
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.25 E-value=0.0028 Score=50.07 Aligned_cols=61 Identities=30% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++.|...+.++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555544442 1112 223455555555555666666666655555444
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0097 Score=58.44 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777777778778888888888887542 2234445444443 444677788999999998754 455678889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.--.+.|+.+...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986 22233 3599999999999999999999999999988764
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.047 Score=47.93 Aligned_cols=133 Identities=12% Similarity=0.040 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHH
Q 035659 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVW 454 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~ 454 (655)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...++++ ...|+ +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777778888999999999999999998762 34456777788888888999999999999886 22222 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
-.+...+...|.++.|+..|+.++.--| ++..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566788999999999999999998877 445556667888999999888776655544
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.17 E-value=0.55 Score=51.44 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=119.8
Q ss_pred ChHHHHHHhhcCCC--CCcchHHHHHHHH--HhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHH
Q 035659 87 SLEYAREMFDQIPQ--PNLYTWNTLIRAY--SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162 (655)
Q Consensus 87 ~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 162 (655)
++..|.+..+.+.+ ||. .|...+.++ .+.|+.++|..+++.. ...+.. |..|...+-..|...+..+++..++
T Consensus 24 qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555555554432 333 244444443 4677777777777665 333322 6667777777777777788888777
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHH----HHHHHHhhcCCCCeeHHHHHHHHHHhCC-C---------hhHHHHHH
Q 035659 163 GMVIKSSFEDDLFISNSLIHFYAICGDLA----MAYCVFVMIGKKDVVSWNSMISGFVQGG-F---------FEKAIELY 228 (655)
Q Consensus 163 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~ 228 (655)
+..... .|+......+..+|.+.+++. .|.+++...+++--.-|+. ++.+.+.. . ..-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHH
Confidence 777765 345666666667777776654 3566666555544444443 33333321 1 12344556
Q ss_pred HHHHHCC-CCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 035659 229 REMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307 (655)
Q Consensus 229 ~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 307 (655)
+.+.+.+ -.-+..-...-+..+...++++ +|++++..-..+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~------eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQ------EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6665554 1112222222233344455544 88888844333321333444445566667777888888887777
Q ss_pred HHHcC
Q 035659 308 MKKQG 312 (655)
Q Consensus 308 ~~~~g 312 (655)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77766
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0013 Score=48.31 Aligned_cols=61 Identities=25% Similarity=0.266 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999999887 4445 467888899999999999999999999999999764
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00061 Score=50.63 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888877766553
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0013 Score=49.57 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..+.+.+++++|.++++++++++|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788888888888888888888888888888888888888888888888877643
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0011 Score=51.79 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVK-PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A 438 (655)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 56777778877777765331 2344444566777777777777777777 2 22332 23333446667777777777
Q ss_pred HHHHHh
Q 035659 439 VEFIEK 444 (655)
Q Consensus 439 ~~~~~~ 444 (655)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0016 Score=61.51 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=76.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
+-+.+.+++++|+..|.+. .+.|+ ++-|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999886 66664 666777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 035659 505 SELRKHMRV 513 (655)
Q Consensus 505 ~~~~~~m~~ 513 (655)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887665
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.4 Score=48.26 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=58.2
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHH
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMIS 213 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 213 (655)
+.|..+|-.|+.-+...+..++.+++++++..- ++--..+|...+..-....++...+.+|.+... -++..|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 346778888888888888888888888887643 344455677677666667788888888877654 36667777777
Q ss_pred HHHhC
Q 035659 214 GFVQG 218 (655)
Q Consensus 214 ~~~~~ 218 (655)
.-.+.
T Consensus 118 YIRr~ 122 (660)
T COG5107 118 YIRRV 122 (660)
T ss_pred HHHhh
Confidence 55553
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.0055 Score=55.47 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHhhc--CCCCeeHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 194 YCVFVMI--GKKDVVSWNSMISGFVQG-----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 194 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3445554 446777777777777654 6666677788899999999999999999988776
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.015 Score=57.44 Aligned_cols=243 Identities=13% Similarity=0.011 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh-
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT- 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 342 (655)
+|+..+....... +-+..-|..-+..+...++++++.--.+.-++.. +-......-.-..+...++..+|.+.|+.
T Consensus 67 nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 67 NALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 6666666665542 3334445555555555666666554443333321 00111222223333333344444433331
Q ss_pred -----------c---CC-----CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCcHH
Q 035659 343 -----------V---KS-----RDVFVWSTM-IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC--ACSHSGLVD 400 (655)
Q Consensus 343 -----------~---~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~ 400 (655)
. .. |...+|..+ ...+...|++++|.+.--..++.. ++ ..+..+++ ++...++.+
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchH
Confidence 1 11 111233333 245677889988888766665532 21 12222333 345567899
Q ss_pred HHHHHHHHcchhcCccCCcchHH-------------HHHHHHHhcCCHHHHHHHHHhC-CC-----CCChhHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPGVKHYT-------------CMVDMLGRAGLLDEAVEFIEKM-PI-----VPGASVWGALLGAC 461 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~~~~y~-------------~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~~~~~ll~~~ 461 (655)
.|...|++.. .+.|+-..-. .=.+...+.|++.+|.+.+.+. .+ +|+...|.......
T Consensus 221 ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 221 KAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred HHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 9999999876 4456532211 1123456889999999999886 44 44566677777778
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+.|+.++|+.--+++++++|.-..+|..-++++...++|++|.+-++...+..
T Consensus 298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999888899999999999999999999998876643
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.01 E-value=0.0065 Score=62.14 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGK-K-----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (655)
+......+++......+++++..++-+... + -..+..++|+.|.+.|..++++.+++.=...|+-||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 333444455555555556666666555443 1 1234457777777777777777777777777777777777777
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~ 295 (655)
++.+.+.|++. .|.++...|...+ ...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~------~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYK------SAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHH------HHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 77777777765 7777777776665 555666666666666554
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.95 E-value=0.011 Score=58.19 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=101.4
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCC-CCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 182 (655)
.+|-.+++..-+.+..+.|..+|.+. ...+ ...+.+...+++. +.-.++.+.|..+|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 36888888888888899999999998 4332 2233333333332 22346677799999999987 5788899999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCC------CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 183 FYAICGDLAMAYCVFVMIGKK------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
.+.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 999999999999999988762 3358999999999999999999999998874 444444444443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.92 E-value=0.041 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTC 424 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~ 424 (655)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34556666667777777777777777765422221 235666666777777777777777776642 232 333444
Q ss_pred HHHHHH
Q 035659 425 MVDMLG 430 (655)
Q Consensus 425 li~~~~ 430 (655)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.79 Score=49.25 Aligned_cols=303 Identities=11% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC---chHHHHHHHHHHHhCCCCChhHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ---FRVGQAIHGMVIKSSFEDDLFISNSLIH 182 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~ 182 (655)
-..+|.-++..+.+..|+++-..+ ...-..- ...|.....-..+..+ .+.+..+-+++. ... .+-..|..+..
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~ 515 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLL-NLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIAR 515 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHh-CCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHH
Confidence 455677777778888888887776 3221111 4445555444444422 222233322222 212 33445666666
Q ss_pred HHHhcCCHHHHHHHHhhcCCC--------CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 183 FYAICGDLAMAYCVFVMIGKK--------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
--..+|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|...- +...|...++
T Consensus 516 ~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l~------ 586 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTLR------ 586 (829)
T ss_pred HHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHH------
Confidence 666788888888887654431 33345566667777788777777666655431 1111111110
Q ss_pred ccccCCChHHHHHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 035659 255 DLEFGRWPNEALSIFHELQLSK------------------------------NVNPDEFTFVSVLSACAQLGAMDIGVQI 304 (655)
Q Consensus 255 ~~~~~~~~~~A~~l~~~m~~~~------------------------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 304 (655)
+. .-|..+|.+..+.. .+.+-........+++++........+.
T Consensus 587 ~~------p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 587 NQ------PLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hc------hhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 00 02222222222110 0111111222233334433332111111
Q ss_pred HH----------HHH-HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 305 HA----------KMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 305 ~~----------~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
.+ .+. +.|......+.+--+.-+...|+..+|.++-.+.+-+|-..|---+.+++..+++++-.++-+.
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11 111 1122222223333344445556666666666666666666666666666666666655555444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
++. +.-|.-...+|.+.|+.++|.+++.... |.. -.+.+|.+.|++.+|.++--
T Consensus 741 kks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC------CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 431 2334445566666666666666665543 111 35566666666666665543
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0064 Score=57.94 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=84.4
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH---ENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 416 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.-|...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346889999999999999999999999876 3333 456666666664332 34678999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
|+..+...|++.+|...|+.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987543
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.89 E-value=0.00063 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=30.7
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.56 Score=46.73 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 463 (655)
.+.+..+.-|...|....|.++-... ++ |+...|...+.+|+..|+|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777788888887776554 33 7888899999999999999988877654 3456788889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.|+..+|.....++ .+..-..+|.+.|+|.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988887772 12456778889999999877633
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=96.87 E-value=0.007 Score=52.52 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=75.2
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKMP-I-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
.-+...|++++|..+|+-+- . .-|..-|..|...+...++++.|...+..+..++++|+..+...+.+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 33557899999999998761 1 124567888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 035659 505 SELRKHMRV 513 (655)
Q Consensus 505 ~~~~~~m~~ 513 (655)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998877
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.11 Score=54.39 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
.+|-.+-++++-+++-. .+..+...+..-+-+...+..|-++|..|-. ...++++....+++++|.
T Consensus 728 d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhH
Confidence 34444444444443322 2344455555455566667777778877742 235677777888888888
Q ss_pred HHHHhCC-CCCCh
Q 035659 440 EFIEKMP-IVPGA 451 (655)
Q Consensus 440 ~~~~~m~-~~p~~ 451 (655)
.+-++.| ..||+
T Consensus 794 alAe~hPe~~~dV 806 (1081)
T KOG1538|consen 794 ALAEKHPEFKDDV 806 (1081)
T ss_pred hhhhhCccccccc
Confidence 8888774 34443
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.074 Score=52.43 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=95.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC--CC---chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGI--KL---NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 361 (655)
.....|-..+++++|.+.|.+..+... .. -...|.....+|.+. ++++|.+.+ ...+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-----------~~A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-----------EKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-----------HHHHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-----------HHHHHHHHhc
Confidence 334455666777777776666543210 00 011222222222222 444444433 3345566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-GLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~ 436 (655)
|++..|-.++.+ +...|... |++++|.+.|++..+.+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666666555544 34456666 8889999888888765433322 345667778899999999
Q ss_pred HHHHHHHhCC---CC-----CChh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 437 EAVEFIEKMP---IV-----PGAS-VWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 437 ~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+|.++|++.. .. .++. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999998861 11 1111 22223335567799999999999999988753
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.86 E-value=0.022 Score=58.32 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVW 351 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 351 (655)
.+.+...+..+++.+....+++.+..++-+.... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4667778888888888888999999988888775 2333455667999999999999999998877554 688999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998887778888887777777665
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.86 E-value=0.0094 Score=47.77 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHhhhcCCC-CCCcchHHHHHHHHHccCC--------chHHHHHHHHHHHhCCCCChhHH
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQ--------FRVGQAIHGMVIKSSFEDDLFIS 177 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~pd~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 177 (655)
...|..+...+++.....+|+.. ++.|+ .|+..+|+.+|.+.++..- .-....+++.|+..++.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 44566666679999999999999 89999 8999999999998876532 33566788899999999999999
Q ss_pred HHHHHHHHh
Q 035659 178 NSLIHFYAI 186 (655)
Q Consensus 178 ~~li~~~~~ 186 (655)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0018 Score=48.02 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 431 RAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..|++++|+++|+++ ...| +..++..+..+|...|++++|..+++++...+|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 345555555555554 2222 344445555555555555555555555555555543
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.25 Score=51.72 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
|=.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. .+++......+++++|..+-+..-
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 33344444444444445555555555555666677777888777542 256666777788888887777654
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHH
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 442 (655)
.+.||+ |.-...-++...+++||.+.|
T Consensus 801 ---e~~~dV--y~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 801 ---EFKDDV--YMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ---cccccc--cchHHHHhhhhhhHHHHHHHH
Confidence 345553 223333334444444444333
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.82 E-value=0.0025 Score=47.47 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE-NVELAEYACSHLLELEP 482 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 482 (655)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888775 3344 4678888888899998 79999999999998887
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.76 E-value=0.16 Score=50.30 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE----AKV-KPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 408 (655)
.+..+..++.-.|+++.|.+.|+.-.. .|- .....+..+|...|.-...+++|+.+++.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666654332 111 11233344555556555666667666654
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.58 Score=49.63 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
++-.|..--...|..+.|++.--.+ .+-|-..+|..|.-+.+....+...-++|-++
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 4444444455677777777654333 23344555555544433333333333333333
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.06 Score=49.98 Aligned_cols=184 Identities=12% Similarity=0.079 Sum_probs=126.3
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchH--------HHHHHHHHhCCCcHHHHH
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTW--------NTLIRAYSSSAEPIQSFM 124 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~--------~~li~~~~~~g~~~~A~~ 124 (655)
+.+|+.+... ...-+++|.+.|.-.. -+++-+..|+.-. +..+..| +.++..+.-.+.+.-.++
T Consensus 125 R~lhAe~~~~----lgnpqesLdRl~~L~~--~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 125 RILHAELQQY----LGNPQESLDRLHKLKT--VVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHHHh----cCCcHHHHHHHHHHHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHH
Confidence 6677766654 2223667777766555 5555555555433 2233333 567777777788888899
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCC-----CChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE-----DDLFISNSLIHFYAICGDLAMAYCVFVM 199 (655)
Q Consensus 125 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~ 199 (655)
++... .....+-++.-...|.+.--+.||.+.|...++.+.+..-. ....+..+....|.-.+++..|...|++
T Consensus 199 ~~~~v-i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 199 AYHSV-IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHH-HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 99988 55444456677777888888899999999999987764333 3344444455567778899999999998
Q ss_pred cCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 200 IGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 200 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
++. .|.+.-|.-.-+..-.|+..+|++.++.|++. .|...+-++++
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 886 35566666555556678999999999999876 46655555444
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.015 Score=56.12 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSN 493 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 493 (655)
|..-+..+.+.|++++|...|+.. ...|+ ...+..+...|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445556666666666654 22233 2355556666677777777777777777665543 344555566
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777776655
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=1.2 Score=47.30 Aligned_cols=246 Identities=14% Similarity=0.061 Sum_probs=131.4
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCc--------chHHHHHHHHHccCCchHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE--------FTFPFVIKAAARLVQFRVGQ 159 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~--------~t~~~ll~~~~~~~~~~~a~ 159 (655)
+++|.+..+.-|+ +..|..|...-...-.++-|...|-+.-.-.|++.-. ..-..-+ .+--|.+++|+
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence 5666666555544 4568777666555555666666665541222322100 0000111 12236677777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 160 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
+++-.+-+.. ..|.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7776665443 2466777778877777777553321 1246777777777777777777766543211
Q ss_pred CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 035659 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314 (655)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 314 (655)
...+.++.....++ +-..+ .. . ++-|....-.+...+.+.|.-++|.+.|-+. +.
T Consensus 826 ---------e~~~ecly~le~f~------~LE~l----a~-~-Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~- 880 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFG------ELEVL----AR-T-LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL- 880 (1189)
T ss_pred ---------HhHHHHHHHHHhhh------hHHHH----HH-h-cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-
Confidence 11233333333221 11111 11 1 4455556667777778888777777665432 21
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST--------------MIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
| .+-++.+...+++.+|.++-+...-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 2 234556666777777777776655544433211 13344555666666666666643
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.031 Score=46.54 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 035659 427 DMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPE---NHGALVLLSNIYAKT 498 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 498 (655)
.++-..|+.++|+.+|++. +.... ...+-.+.+.++..|++++|..++++..+..|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444556666666666553 11111 224444556666666666666666666665555 444445555566666
Q ss_pred CCchhHHHHHHH
Q 035659 499 GKWDNVSELRKH 510 (655)
Q Consensus 499 g~~~~a~~~~~~ 510 (655)
|+.++|.+.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.3 Score=49.16 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSR---DV----FVWSTMIAGFAM---YGCGREALDLFSRMQEAKVKPNAVTFTNV 389 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 389 (655)
...++-.|-...+++...++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677788888888888887653 11 111223334445 67888888888886665566777777766
Q ss_pred HHHHHc---------cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH----HHHHH---Hh-C---C---
Q 035659 390 LCACSH---------SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE----AVEFI---EK-M---P--- 446 (655)
Q Consensus 390 l~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~----A~~~~---~~-m---~--- 446 (655)
...|-. ....++|...|.+.- .+.|+..+--.++..+...|.-.+ ..++- .. . +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 655421 224677777777653 455665443344444444443222 22222 11 1 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
-..|-..+.+++.++.-.|+.+.|.+.++++.++.|+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123445567899999999999999999999999988664
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.0081 Score=60.87 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666666666666666653 445553 23666666666666666666666666665
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.61 E-value=0.094 Score=45.43 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHL 477 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~ 477 (655)
.++...|+.+.|++.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 202
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.59 E-value=0.33 Score=47.79 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhC-CChhHHHHHHHHHHHC----CCCCC--HhhHHHHHH
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG-GFFEKAIELYREMEME----NVKPD--EVTMVAVLS 248 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~ 248 (655)
.+...+..|.+.|++..|-+++ ..+...|-+. |++++|++.|++..+. | .+. ...+..+..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3455566777777777776654 3456666666 7888888888776442 3 111 345566777
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCC--chh
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVN-----PDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKL--NCY 318 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~--~~~ 318 (655)
.+.+.++++ +|+++|++..... .. .+.. .|...+-.+...|+...|...++..... ++.. ...
T Consensus 164 l~~~l~~y~------~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 164 LYARLGRYE------EAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHTT-HH------HHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHhCCHH------HHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 888888866 9999999887643 21 1221 2223333556678999999999988754 2322 245
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhcCCCChhH
Q 035659 319 LTTSLIDMYTK--CGNLDKALEVFHTVKSRDVFV 350 (655)
Q Consensus 319 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~ 350 (655)
....|+++|-. ...+++|..-|+.+.+-|..-
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 66677777764 345778888888887766543
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.56 E-value=0.11 Score=55.58 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASV 453 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 453 (655)
+...|..+.......|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 344555554444556777777777777763 3466667777777777777777777777664 34444333
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.54 E-value=0.018 Score=52.24 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------
Q 035659 338 EVFHTV--KSRDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-------------- 396 (655)
Q Consensus 338 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 396 (655)
..|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666677666653 55666667788888888888888998888876542
Q ss_pred --CcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 397 --GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 397 --g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
.+-+-|++++++|... |+-||.+++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1346678888888664 888888888888888877664
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.11 Score=45.67 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWS 352 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 352 (655)
..|+...-..+..++...|+..+|...|++...--+.-|..+.-.+.++....++...|...++.+-+- .....-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 556666667777777788888888888877776555666777777777777777777777777665431 233344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
.+...|...|++.+|...|+...+. -|+...-.....-+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4555666666666666666666663 333322222222344555555554444333
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.018 Score=56.72 Aligned_cols=257 Identities=14% Similarity=0.053 Sum_probs=159.7
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCC-Cchhh
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKK----QGIK-LNCYL 319 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~-~~~~~ 319 (655)
-+++.|+.. ..+.+|+...+-| .-|. ..|+.+-++|.-++++++|.++|..=+. .|-+ -....
T Consensus 26 RLck~gdcr------aGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 26 RLCKMGDCR------AGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHhccchh------hhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 467778865 7788898888776 3343 3566777888888999999998754221 1110 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS-------R--DVFVWSTMIAGFAMYGC--------------------GREALDL 370 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~ 370 (655)
...|...+--.|.+++|.-.-.+-.. + ....+..+...|...|+ .+.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 23344444455667766544332111 1 12234445555554442 1223444
Q ss_pred HHHHH----HcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHcc---hhcCccC-CcchHHHHHHHHHhcCCHHHHHHH
Q 035659 371 FSRMQ----EAKVK-PNAVTFTNVLCACSHSGLVDEGRMFFNQME---PVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 371 ~~~m~----~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
|.+=. +.|-. .....|..|-..|.-.|+++.|+..++.-. +.+|-.. ....+..+.+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 43221 11100 112345566666667789999988776532 2334332 245788889999999999999998
Q ss_pred HHhC-------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 442 IEKM-------PI-VPGASVWGALLGACKIHENVELAEYACSHLLEL----E--PENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 442 ~~~m-------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
|+.. +- .-...+..+|...|....+++.|+..+.+-+.+ + -....++++|+++|...|..+.|..+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8764 21 123567778899999999999999888776553 2 23457899999999999999999887
Q ss_pred HHHHHh
Q 035659 508 RKHMRV 513 (655)
Q Consensus 508 ~~~m~~ 513 (655)
.+.-.+
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 765543
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=1.7 Score=46.87 Aligned_cols=338 Identities=12% Similarity=0.086 Sum_probs=196.7
Q ss_pred hcCCCCCCcchH-----HHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC
Q 035659 131 YNSPYFPNEFTF-----PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG---DLAMAYCVFVMIGK 202 (655)
Q Consensus 131 ~~~~~~pd~~t~-----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~ 202 (655)
.+-|+..+..-| ..+|.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 355555554444 345667777788889998887764322122 567777777777763 33445555566666
Q ss_pred --CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC
Q 035659 203 --KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK----PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276 (655)
Q Consensus 203 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~ 276 (655)
...++|..+..--.+.|+++-|..+++.=...+-. .+..-+...+.-+.+.|+.+ -...++..+...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~------Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTD------LIIQVLLHLKNKL 576 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCch------hHHHHHHHHHHHH
Confidence 57789999999999999999999887642222110 11122333344444444433 3333333332211
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh-c------CCCChh
Q 035659 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT-V------KSRDVF 349 (655)
Q Consensus 277 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~------~~~~~~ 349 (655)
+...|.. -..+.-.|..+|.+..+..-. ..|-+.|-...+...+ ..|.. - .+.-..
T Consensus 577 ----~~s~l~~------~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~-a~~~~q~~~~~~~~~~r~~ 639 (829)
T KOG2280|consen 577 ----NRSSLFM------TLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQAL-ASFHLQASYAAETIEGRIP 639 (829)
T ss_pred ----HHHHHHH------HHHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhh-hhhhhhhhhhhhhhcccch
Confidence 1111111 112233455566555542111 1122223322222222 21111 0 011122
Q ss_pred HHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC
Q 035659 350 VWSTMIAGFAMYGCG---RE-------ALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418 (655)
Q Consensus 350 ~~~~li~~~~~~g~~---~~-------A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 418 (655)
........+++.... ++ -+.+.+.+.. .|..-..-|.+-.+.-+...|...+|.++-.+.+ -||
T Consensus 640 ~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipd 714 (829)
T KOG2280|consen 640 ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPD 714 (829)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----Ccc
Confidence 223333444443331 11 1222333322 2333444556666777888899999999887764 488
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
-..|..-+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+.+.+.-.+ .-...+|.+.
T Consensus 715 Kr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~ 783 (829)
T KOG2280|consen 715 KRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRV 783 (829)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHh
Confidence 8899999999999999999999988874 3667888899999999999999888775322 1567889999
Q ss_pred CCchhHHHHH
Q 035659 499 GKWDNVSELR 508 (655)
Q Consensus 499 g~~~~a~~~~ 508 (655)
|++.+|.++-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 9999998764
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.46 E-value=0.0057 Score=40.66 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988877653
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.45 E-value=0.048 Score=47.66 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=78.1
Q ss_pred HHHHHHHHH---HHHccCcHHHHHHHHHHcchhcC--ccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 383 AVTFTNVLC---ACSHSGLVDEGRMFFNQMEPVYG--VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 383 ~~t~~~ll~---a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
...|..++. .....++.+.+...+..+...|. +-|+... ..........++.+ -......+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l 68 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERL 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHH
Confidence 344444433 23456777788777777766542 1122111 11222223333332 12355667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCC
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-----SGLKKEP 520 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 520 (655)
+..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++++.+.+ .|+.|++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 78888999999999999999999999999999999999999999999999998753 3665543
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=1.2 Score=44.62 Aligned_cols=264 Identities=17% Similarity=0.041 Sum_probs=133.0
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCee--HHHHHHHHHHhCCChhHHH
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVV--SWNSMISGFVQGGFFEKAI 225 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~--~~~~li~~~~~~g~~~~A~ 225 (655)
+.+..++..|...+..+++.. +.+..-|..-...|...|++++|.--.++-.+ +|-. ...-.-..+...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 334445566666677777765 33455566666666667777776655433222 2222 2222333333344444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHhccCCHHHHHHH
Q 035659 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS-ACAQLGAMDIGVQI 304 (655)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~ 304 (655)
+.|+. ...+ . ...|+..++.......-+|.-.++-.+-. .+...|+.+.|.++
T Consensus 138 ~~~~~---------~~~~-~----------------~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 138 EKLKS---------KQAY-K----------------AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHhhh---------hhhh-H----------------HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 44331 1111 0 00222223332222211233333333322 23556677777776
Q ss_pred HHHHHHcCCCCchhhHHHHHH--HHHhcCCHHHHHHHHhhcCCCChh---------------HHHHHHHHHHHcCChHHH
Q 035659 305 HAKMKKQGIKLNCYLTTSLID--MYTKCGNLDKALEVFHTVKSRDVF---------------VWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A 367 (655)
-..+.+.. ..+ .+..+++ ++.-.++.+.|..-|++...-|.. .|.--..-..++|++.+|
T Consensus 192 a~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 66666543 111 1222222 222346667777777665542221 222223345567888888
Q ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 368 LDLFSRMQEA---KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 368 ~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.+. +..|..-..++.-.++|++|.+-++
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887753 3455666677777777788888888777776652 2332 1222222234445667777777776
Q ss_pred hC
Q 035659 444 KM 445 (655)
Q Consensus 444 ~m 445 (655)
+.
T Consensus 346 ~a 347 (486)
T KOG0550|consen 346 KA 347 (486)
T ss_pred HH
Confidence 64
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.35 E-value=0.071 Score=44.39 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=60.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVD 427 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~ 427 (655)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 34566678888888888888888776654 3456667777888888888888888877542 33 122223344
Q ss_pred HHHhcCCHHHHHHHHHh
Q 035659 428 MLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~ 444 (655)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66777888888777644
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.33 E-value=0.35 Score=40.06 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=87.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
+.-.|..++..++..+...+. +..-++.+|.-....-+-+-..+.++.+-+.+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 344677888888888887643 45556666655455555566666777665433332 2344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
....+-.++ .+..-...-+......|+-+.-.+++..+.+.+..++.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 133344556778888999999999999998777668899999999999999999999999999999975
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.26 E-value=0.93 Score=43.38 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=27.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 355 IAGFAMYGCGREALDLFSRMQEA--KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
..-|.+.|.+..|+.-|+.+.+. +.+........+..++...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455556665666666555543 12222334444555555556655555554433
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.24 E-value=0.26 Score=47.17 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=99.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCh---h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 035659 323 LIDMYTKCGNLDKALEVFHTVKSRDV---F---VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH- 395 (655)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 395 (655)
....+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444556777777777777654211 1 1233456667778888888888887774322222333333333321
Q ss_pred -cC---------------c---HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHH--
Q 035659 396 -SG---------------L---VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW-- 454 (655)
Q Consensus 396 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-- 454 (655)
.+ + ..+|...|+.+++. -|+ ..-..+|...+..+. +...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~---~~la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLK---DRLAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHH---HHHHHHH
Confidence 10 1 22344444444443 233 233444444433331 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
-.+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|.+.|..++|.++.+.+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 133455888899999999999999977654 45677889999999999999988776543
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.11 E-value=0.023 Score=42.66 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 489 (655)
..|.+.+++++|.++++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678889999999999887 4444 4677788888899999999999999999999997765443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.36 Score=45.08 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH---
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV--- 426 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li--- 426 (655)
..+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+. .-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666667777777888888887665666777777777778888888888888866544 2223333333333
Q ss_pred --HHHHhcCCHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 427 --DMLGRAGLLDEAVEFIEKMPIVP--GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 427 --~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
..|.-++++.+|...+.+.+... |+..-|.-.-...-.|+...|.+..+.+.+..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33444556666666666653221 22333333333334566777777777777766643
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.91 E-value=2.1 Score=42.62 Aligned_cols=288 Identities=11% Similarity=0.045 Sum_probs=139.4
Q ss_pred hHHHHHHHHHh--CCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHH--ccCCchHHHHHHHHHHHhCCCCChhH--HH
Q 035659 105 TWNTLIRAYSS--SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA--RLVQFRVGQAIHGMVIKSSFEDDLFI--SN 178 (655)
Q Consensus 105 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 178 (655)
.|.+|-.++.- .|+-..|..+-.+. . .-+..|...+..|+.+-. -.|+.+.|++-|+.|+.. |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 35555555543 35555665555444 1 123456666666665432 347777777777777642 22111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHhc
Q 035659 179 SLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEV--TMVAVLSACAK 252 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~ 252 (655)
.|.----+.|+.+.|+..-+..-+ | -...|.+.+...+..|+++.|+++++.-++.. +.++.. .-..|+.+-..
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 222222356777777776665543 2 23567788888888888888888887665442 333322 11222222111
Q ss_pred c-CccccCCChHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 253 K-RDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 253 ~-~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
. -+-+ +..|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+.. |.+.++. +-.+.+.
T Consensus 239 s~ldad----p~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~ 307 (531)
T COG3898 239 SLLDAD----PASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARS 307 (531)
T ss_pred HHhcCC----hHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcC
Confidence 0 0001 1233333333222 4555432 2233445667777777777777776654 3333322 2223445
Q ss_pred CCHHHH----HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHHHH
Q 035659 331 GNLDKA----LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-SHSGLVDEGRMF 405 (655)
Q Consensus 331 g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 405 (655)
|+.... .+-++.|+..+..+-.++..+-...|++..|..--+.... ..|....|..+...- ...|+-.++.+.
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 543221 1223344444555555555554455555444443333333 344444444444332 223555555555
Q ss_pred HHHcc
Q 035659 406 FNQME 410 (655)
Q Consensus 406 ~~~~~ 410 (655)
+.+..
T Consensus 386 lAqav 390 (531)
T COG3898 386 LAQAV 390 (531)
T ss_pred HHHHh
Confidence 44444
No 218
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.91 E-value=0.091 Score=50.72 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=66.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV----KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWG 455 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~ 455 (655)
.|...+....+.|++++|...|+.+.+.| |+. ..+..+...|...|++++|...|+.+ ...|+ ...+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444433455677788887777777653 332 35666777788888888888887776 11122 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+...+...|+.+.|...++++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566677788999999999999998888764
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.071 Score=52.98 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..++..|..++.+.+++..|++..+++++++|+|..+.+.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567778888899999999999999999999999999999999999999999999999998873
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.71 E-value=0.016 Score=44.28 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLEL----EPE---NHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.+++.+...+...|++++|+..+++++++ ++. -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777777654 111 24567778888888888888888887654
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.68 E-value=3.5 Score=43.52 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=126.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
++..+|...++.-.+.|+.+.+.-.|+...-+ =...|--.+.-....|+.+-|..++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888889999999999999988754 233555555555556888888887776665433322222222222
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCChhHHHHHHH-----HH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAV---EFIEKM-PIVPGASVWGALLG-----AC 461 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~ 461 (655)
-+...|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.- .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 256678999999999999875 3 652 33334456677889998888 555443 22223333333332 24
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 501 (655)
...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5668999999999999999999999999999888776643
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.67 E-value=0.016 Score=44.24 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-------P-IVPG-ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666665555543 1 1122 456667777777777777777777776653
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.55 E-value=0.11 Score=43.59 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
..++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445666666666777766666666544322111 0000000 112234667777788888888778
Q ss_pred CcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
|++..|.++.+...+.|++.-+..+|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888888888887777777666667766665
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.15 Score=48.89 Aligned_cols=108 Identities=9% Similarity=-0.010 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CCeeHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG---DLAMAYCVFVMIGK---KDVVSWNSM 211 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~---~~~~~~~~l 211 (655)
|...|-.|-.++...|+...|..-|....+.. +++...+..+...+.... .-.++..+|+++.. .|+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 66667777777777777777777777777654 445555555555443332 24466777776654 245566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
...+.+.|++.+|...|+.|.+.. |....+..++.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 777777788888888888777653 33344444444
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.9 Score=39.99 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=121.3
Q ss_pred CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hhHH
Q 035659 278 VNPDEF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD--VFVW 351 (655)
Q Consensus 278 ~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 351 (655)
+.||.. .|.-...+|...+++++|...+.+..+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566643 4555566788888999999887777642 1222222221 133445555555554432 3356
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc----CccCCcchHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQE--AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY----GVVPGVKHYTCM 425 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~y~~l 425 (655)
+-....|..+|..+-|-..+++.-+ .++.| ++|+++|++..... ..+.-...|...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 6667788888888877776665533 13444 44444444433210 111123445666
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-----C--CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCcchHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKMP-----I--VPGA-SVWGALLGACKIHENVELAEYACSHLLEL----EPENHGALVLLSN 493 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~ 493 (655)
...|.+..++++|-..+.+-. + -|+. ..+-+.|-.+....++..|++.++.--+. +|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 677888888888877766542 1 1222 22444445566667899999999886664 3667777777877
Q ss_pred HHHhcCCchhHHHHHH
Q 035659 494 IYAKTGKWDNVSELRK 509 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~ 509 (655)
+| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 76 4677777766543
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.39 E-value=3.3 Score=41.27 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
.|.+-|+.|...- ..-..-...|.-..-+.|+.+.|.+.-+..-..- +.-...+.+++...+..|+++.|+++.+.-
T Consensus 138 ~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 138 DARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 6666666665321 1111123334444456788888888777766543 233567788888889999999999988865
Q ss_pred CC-----CChh--HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 344 KS-----RDVF--VWSTMIAGFAM---YGCGREALDLFSRMQEAKVKPNAVTF-TNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 344 ~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.+ +++. .-..|+.+-+. ..+...|...-.+..+ +.||.+-- .....++.+.|++.++-.+++.+-+
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK- 291 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK- 291 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-
Confidence 43 3332 22223332221 2345555555555444 56765433 2334578999999999999999864
Q ss_pred cCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 413 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
..|.+..+...+ +.+.|+. +++-+++. ..+|| ..+.-.+..+-...|++..|..-.+.+....|. ...
T Consensus 292 --~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~ 364 (531)
T COG3898 292 --AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESA 364 (531)
T ss_pred --cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhH
Confidence 466666554433 4556653 22222221 23455 566677778888999999999999999999984 478
Q ss_pred HHHHHHHHHhc-CCchhHHHHHHHHHh
Q 035659 488 LVLLSNIYAKT-GKWDNVSELRKHMRV 513 (655)
Q Consensus 488 ~~~l~~~~~~~-g~~~~a~~~~~~m~~ 513 (655)
|..|.++-... |+-.++...+-+..+
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 88888887554 888888777665544
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.39 E-value=0.15 Score=42.97 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcc--------------hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQME--------------PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-- 445 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-- 445 (655)
|..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666665432 11133344555555555555555555555554443
Q ss_pred --CCCCChhHHHHHHH
Q 035659 446 --PIVPGASVWGALLG 459 (655)
Q Consensus 446 --~~~p~~~~~~~ll~ 459 (655)
+++-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 33333445555443
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.19 E-value=0.68 Score=43.02 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHH
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 506 (655)
+..-|.+.|.+..|..-++.+++.-|+.. .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 34557888999999999999999888654 355678888889988875443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.13 E-value=0.11 Score=52.90 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc----hHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK----HYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
+...++.+..+|.+.|++++|...|+...+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666666666666666666553 345532 3666666666666666666666654
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.11 E-value=0.61 Score=45.63 Aligned_cols=193 Identities=8% Similarity=0.041 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH-------hhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVF-------HTVKSR--DVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPN---AV 384 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~ 384 (655)
.++..+.++.++.|.++++...- .+..+. -..+|..+..++-+..++.+++.+-+.-.. .|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34556666777777776664331 111111 124555666666666666666665544332 233331 12
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCh--
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP----GVKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGA-- 451 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-- 451 (655)
...++-.+....+.++++++.|+...+--.-.. ...+|..|...|++..++++|.-+..+. ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233455566667788899988888764311112 2467888999999999988876555443 332111
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 452 ---SVWGALLGACKIHENVELAEYACSHLLELE------PENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 452 ---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.+...|..+++..|....|.+.-+++.++. +-.......++++|...|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223345577889999999988888887753 22334455789999999998888776664
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.95 E-value=3.1 Score=38.65 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
.+....+...+......... ............+...+.+..+...+..... .....+......+...+...++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555554322 1356677777788888888888888777542 34456666777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcchhcCccC----CcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLC-ACSHSGLVDEGRMFFNQMEPVYGVVP----GVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
+.+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.++|...+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 88888877543331 22222222 67888999999999988743 233 23334444445667888999998888
Q ss_pred hC-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 444 KM-PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 444 ~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+. ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 33333 5677888888888889999999999999988875566667777777777788888887776654
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.89 E-value=0.27 Score=40.59 Aligned_cols=89 Identities=24% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCC---cchHHHHHHHHHhcCCc
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELE-PEN---HGALVLLSNIYAKTGKW 501 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 501 (655)
++...|+++.|++.|.+. .+- .....||.-..+++-.|+.++|+.-+++++++. |.. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788889998888775 222 357788999999999999999999999999875 332 23577778888899999
Q ss_pred hhHHHHHHHHHhCCC
Q 035659 502 DNVSELRKHMRVSGL 516 (655)
Q Consensus 502 ~~a~~~~~~m~~~g~ 516 (655)
+.|..=|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888877664
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.85 E-value=3.9 Score=41.38 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---C----eeHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 179 SLIHFYAICGDLAMAYCVFVMIGKK---D----VVSWNSMISGFVQ---GGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
.++-.|-...+++.-.++++.+... + ...--...-++.+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4445688888899999999888763 1 1112234455566 7899999999999777777888888888877
Q ss_pred HHhccCc---cccCCChHHHHHHHHHHHH
Q 035659 249 ACAKKRD---LEFGRWPNEALSIFHELQL 274 (655)
Q Consensus 249 ~~~~~~~---~~~~~~~~~A~~l~~~m~~ 274 (655)
.|-..-. .......++|+..|.+--.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 6643211 1111114466666665543
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.83 E-value=0.17 Score=47.66 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHHhhcC--CCCeeHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 192 MAYCVFVMIG--KKDVVSWNSMISGFVQG-----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 192 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
..++.|...+ ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 3455666666 57888888888887654 456666677889999999999999999998776543
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.70 E-value=1.3 Score=41.23 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHH
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~ 437 (655)
..-|.+.|.+..|..-++.+.+.|.-.+. ......++.+|.+.|..+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 34455555555555555555554321111 2234455555555555553
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=6 Score=45.27 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=15.4
Q ss_pred HHHHHHHHhCC--ChhHHHHHHHHHHH
Q 035659 209 NSMISGFVQGG--FFEKAIELYREMEM 233 (655)
Q Consensus 209 ~~li~~~~~~g--~~~~A~~~~~~m~~ 233 (655)
-.+|..|++.+ ..++|+....+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35667777766 55666666655553
No 237
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.52 E-value=3.2 Score=36.72 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC--CHHHHH
Q 035659 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG--AMDIGV 302 (655)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~ 302 (655)
++.++.+.+.+++|+...+..+++.+.+.|... .+.++...+ +-+|.......+-.+.... -...|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----------~L~qllq~~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~l 82 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----------QLHQLLQYH-VIPDSKPLACQLLSLGNQYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHhhc-ccCCcHHHHHHHHHhHccChHHHHHHH
Confidence 345566667778888888888888888887755 455555555 6666665554443332211 122222
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 035659 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363 (655)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 363 (655)
+++.++.. .+..+++.+...|++-+|.++.+.....+...-..++.+-.+.++
T Consensus 83 DMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 83 DMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred HHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 22222221 233445555566666666666555433333333333444333333
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.46 E-value=6.6 Score=40.10 Aligned_cols=369 Identities=13% Similarity=0.055 Sum_probs=181.9
Q ss_pred cCCCCChHHHHHHhhcCCC------------------CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhc---CCCCCCcc
Q 035659 82 LGTFSSLEYAREMFDQIPQ------------------PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN---SPYFPNEF 140 (655)
Q Consensus 82 ~~g~~~~~~A~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~pd~~ 140 (655)
+.+ .++.|.+.|..-.. +|-.-=+..+..+...|++.++..++++|..+ +....|..
T Consensus 91 ~~k--~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 91 KQK--EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred Hhh--hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 445 78888887754321 12222355677888999999999999888322 22346788
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhC-
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG- 218 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~- 218 (655)
+|+.++-.+++ ..+-++.+.. ..|. .-|--++-.|.+.=..-++...-.-. |......+++.-..-.
T Consensus 169 ~yd~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~~~Y~k~~--peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 169 MYDRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQRPYEKFI--PEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhhchHHhhC--cHHHHHHHHHHHHHhCC
Confidence 88876554443 3333333322 1221 12344455554432111111100000 1111111111111110
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHH
Q 035659 219 -GFFEKAIELYREMEMENVKPDEV-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP----DEFTFVSVLSAC 292 (655)
Q Consensus 219 -g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p----~~~t~~~ll~~~ 292 (655)
.+..--+++++.-...-+.|+-. ....+...+.+ + ++++..+-+.+.... +.+ =..+|..++..+
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~------~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D------PEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C------hHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Confidence 11111222222223333445432 22333333333 1 123433333332211 111 134788888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHH-------HHHHHHHh----cCCHHHHHHHHhhcCCCChh-----HHHH-HH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTT-------SLIDMYTK----CGNLDKALEVFHTVKSRDVF-----VWST-MI 355 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~~~~~~~~-----~~~~-li 355 (655)
.+.++...|.+.+..+.-. .|+..+.. .|.++.+. .-++.+=..+++.+...|+. .|-. -.
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 8999999999888877663 34333222 23333331 11233344555555544432 1111 12
Q ss_pred HHHHHcCC-hHHHHHHHHHHHHcCCCCC-HH----HHHHHHHHHHc---cCcHHHHHHHHHHcchhcCccCC----cchH
Q 035659 356 AGFAMYGC-GREALDLFSRMQEAKVKPN-AV----TFTNVLCACSH---SGLVDEGRMFFNQMEPVYGVVPG----VKHY 422 (655)
Q Consensus 356 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~-~~----t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~----~~~y 422 (655)
.-+-+.|. -++|+++++...+ +.|. .. ++..+=.+|.. ...+.+-..+-+-+.+. |+.|- ...-
T Consensus 387 k~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eia 463 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIA 463 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHH
Confidence 23445555 6788888888776 3332 22 22222223322 23455555555555444 77663 3455
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 423 TCMVDM--LGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 423 ~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
|.|.++ +...|++.++.-.-.-+ .+.|++.++.-++-......++++|..++..+
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666654 45678888775432222 45678888888888888888888888777654
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.25 E-value=3 Score=35.92 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
.++..+...+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555666666666655554 24455555555555543
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.13 E-value=0.33 Score=45.96 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPE---NHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|..++...|+++.|...|..+.+-.|+ -+.++.-|+.+..+.|+.++|..+++.+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555666666666666666666654433 334555666666666666666666666554
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.05 E-value=0.096 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888899999999999999988885
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.05 E-value=0.13 Score=44.86 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHhhH
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREME-----MENVKPDEVTM 243 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~ 243 (655)
+...++..+...|++++|..+.+.+.. | |...|..+|.+|...|+..+|++.|+++. +.|+.|+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456677888889999999999988765 3 66789999999999999999999998874 34888887653
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.47 Score=47.38 Aligned_cols=138 Identities=16% Similarity=0.029 Sum_probs=95.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 35677778888888887776542 00 111111122222111 112356677788889999
Q ss_pred HHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH-HHHHHHH
Q 035659 435 LDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV-SELRKHM 511 (655)
Q Consensus 435 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 511 (655)
+.+|++.-++. .. .+|+-..-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887775 33 345666666778899999999999999999999999988888888887777666554 7788888
Q ss_pred HhC
Q 035659 512 RVS 514 (655)
Q Consensus 512 ~~~ 514 (655)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.97 E-value=0.36 Score=45.50 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 035659 335 KALEVFHTVK--SRDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG---------- 397 (655)
Q Consensus 335 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 397 (655)
..++.|..+. ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455677666 67888888888888764 455666677899999999999999999998875543
Q ss_pred ------cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 398 ------LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 398 ------~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
.-+=++.++++|... |+.||-++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 224478899999775 9999999999999999998863
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=5.2 Score=38.56 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
......|+..+|..+|+........ +...-..+..++...|+.+.|..++..+-.. --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777777664222 2344445666777777777777777776432 1011111112223444444444
Q ss_pred HHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCc
Q 035659 436 DEAVEFIEKMPIVP-GASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 436 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~ 501 (655)
.+..++-.+..-.| |...-..+...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.-.|.-
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 44444444442334 34444555566666666666666655555543 33445555555555555533
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.89 E-value=0.15 Score=31.27 Aligned_cols=33 Identities=33% Similarity=0.262 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888888888888888888888864
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.43 E-value=1.1 Score=46.90 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHcCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHH
Q 035659 359 AMYGCGREALDLFS--RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 359 ~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 436 (655)
...++++++.++.+ ++.. .+ +..-...++.-+.+.|..+.|+++-..-. .-.+...++|+++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 34556666555554 1111 11 13335556666666677777665543322 1234455677777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 437 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|.++.++.. +...|..|.......|+++.|++.+++.. -+..|+-.|...|+.+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776666553 56677777777777777777777777653 34455666666666665555555554444
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.38 E-value=3.8 Score=43.55 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=93.9
Q ss_pred HHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHhc----cCCHHHHHHHHHHHHHcCC
Q 035659 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-----TFVSVLSACAQ----LGAMDIGVQIHAKMKKQGI 313 (655)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-----t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~ 313 (655)
+..++....-.|+.+ .+++++.+..+.+++.-... +|..++..++. ..+.+.+.+++..+.+.
T Consensus 191 ~~kll~~vGF~gdR~------~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRE------LGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HHHHHhhcCcCCcHH------HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 455666666777765 88888887766554443322 24444444333 45678888888888875
Q ss_pred CCchhhHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 314 KLNCYLTTS-LIDMYTKCGNLDKALEVFHTVKSR-------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 314 ~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
-|+...|.- -.+.+...|++++|.+.|+..... ....+--+.-.+.-..++++|.+.|.++.+.. .-...+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 255444433 345666788888888888865431 12233334445666778888888888887743 223444
Q ss_pred HHHHHHH-HHccCcH-------HHHHHHHHHcc
Q 035659 386 FTNVLCA-CSHSGLV-------DEGRMFFNQME 410 (655)
Q Consensus 386 ~~~ll~a-~~~~g~~-------~~a~~~~~~~~ 410 (655)
|..+..+ +...|+. ++|.++|.++.
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4444333 2334555 55666665543
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.37 E-value=1.6 Score=37.32 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 429 LGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777777766 2222 2344556777788888888888888888888776643
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.29 E-value=4.9 Score=34.58 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=17.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
++..+.+.+.......+++.+...+. .+....+.++..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444444444444444444431 333344444444443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=93.28 E-value=2.7 Score=43.23 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc
Q 035659 364 GREALDLFSRMQE-AKVKPNAV-TFTNVLCACS---------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432 (655)
Q Consensus 364 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 432 (655)
.+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-....+. -.-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4577888888872 23566543 3333322211 122345555665555532 122455555666666677
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH--HHHHHHHhcCCchhHHHHH
Q 035659 433 GLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV--LLSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 508 (655)
|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|....+-. ..+++|... ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888776 45565 456666666667778888888888888888876543322 223344433 345555554
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.26 E-value=2.8 Score=43.95 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=88.2
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 190 (655)
...+-+++++++..+...-.....+ | ......++.-+-+.|..+.|.++-. |. ..-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCH
Confidence 3445567888876666521011112 2 3446777777788888888877632 32 2345666789999
Q ss_pred HHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHH
Q 035659 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270 (655)
Q Consensus 191 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~ 270 (655)
+.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+ .-.++.+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~------~L~kl~~ 397 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE------KLSKLAK 397 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH------HHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH------HHHHHHH
Confidence 99998876665 556899999999999999999988887653 555555666666643 3334444
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 035659 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305 (655)
Q Consensus 271 ~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 305 (655)
.....| -++....++.-.|+.++..+++
T Consensus 398 ~a~~~~-------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 398 IAEERG-------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcc-------CHHHHHHHHHHcCCHHHHHHHH
Confidence 444333 2334444444445555544443
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=93.24 E-value=1.1 Score=45.87 Aligned_cols=116 Identities=5% Similarity=0.006 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcC
Q 035659 398 LVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGR---------AGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHE 465 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~---------~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 465 (655)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.++. .+. -|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 457788889888754456776 3445444433321 22345566666554 333 35677777777788888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+++.|...|+++..++|+...+|...+....-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999887544
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=2.2 Score=41.04 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcCCH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA---LLGACKIHENV 467 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~ 467 (655)
......|++.++...|...... ..-+...-..|...|...|+.+.|..++..+|.+-...-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3467789999999999988753 223356677888999999999999999999975544444443 22233333333
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+... +++-...+|+|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 32222 233345689999999999999999999999998877776653
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=3.4 Score=40.25 Aligned_cols=112 Identities=11% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCcHHHHH
Q 035659 331 GNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT----NVLCACSHSGLVDEGR 403 (655)
Q Consensus 331 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~ 403 (655)
|+.-+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 24555555555555555555555555555443 223322211 1112234455555555
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
+.-++..+. ...|.-.-.++...+.-.|++.++.++..+-
T Consensus 196 k~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544421 1112223334444455555555555555543
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.43 E-value=5.7 Score=33.21 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=50.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C--------------------hhHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-D--------------------VFVW 351 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--------------------~~~~ 351 (655)
.-.|.++++.++..+...+. +..-+|.+|--....-+-+...++++.+-+- | ....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34578888888888887743 2333333332222223333344444443321 1 1222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
...+..+...|+-++-.+++.++.. +-++++.....+..||.+.|+..++.+++.++.+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3334444444555544455544443 22444444455555555555555555555555443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.16 E-value=3.9 Score=34.95 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVK--PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 433 (655)
....+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...++..++.+.-.|+ ..|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 3344566666666666666654111 12234445566666666666666666666654333332 23444444433322
Q ss_pred CHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 434 LLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 434 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+. .++.+ ...-| .+....|...|+++++.-|++.
T Consensus 97 ~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2211 11111 11111 1235677888888888888654
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.97 E-value=2.7 Score=43.37 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
..+...-+++-++..+ +.||..+...++ +-.....+.+++++|++..+. +- ..+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhh
Confidence 3444555555555555 556654443333 334455678888888876653 10 000000 00001111 111
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE--NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 441 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
.+..-..+|-..+-..|...+++.|+.++|.+.++.+++..|. +......|++.+...+++.++..++.+-.+..+++
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222334455777778888888888888888877654 44567778888888888888888888776544444
Q ss_pred CC
Q 035659 519 EP 520 (655)
Q Consensus 519 ~~ 520 (655)
..
T Consensus 329 SA 330 (539)
T PF04184_consen 329 SA 330 (539)
T ss_pred hH
Confidence 43
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.93 E-value=5.1 Score=42.60 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=71.4
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHH-HHHHHhcCCHHHHHHHHHhCC-CC-----CChhHHHHHHHHHHhcCCHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCM-VDMLGRAGLLDEAVEFIEKMP-IV-----PGASVWGALLGACKIHENVE 468 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 468 (655)
....+.+.++++.+.+. -|+...|... ...+...|++++|++.|++.- .+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777654 3554444332 234556677777777777541 01 11233444555667788899
Q ss_pred HHHHHHHHHhccCCCCcchHHH-HHHHHHhcCCc-------hhHHHHHHHHHh
Q 035659 469 LAEYACSHLLELEPENHGALVL-LSNIYAKTGKW-------DNVSELRKHMRV 513 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~-------~~a~~~~~~m~~ 513 (655)
+|...+.++.+...-+...|.. .+-++...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999998877655555554 44455677888 777777776654
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=1.4 Score=41.76 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-hhHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-ASVWGALLG 459 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~ 459 (655)
|+..+. +.+.|++..|.+-|...++.|.-.+ ....+--|...+...|++++|..+|..+ |-.|. +...--|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 3445666666666666665432111 1234445666666677777776666555 22222 244555556
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.....|+.++|...++++.+.-|....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 666777777777777777777776543
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.85 E-value=5.1 Score=40.72 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHhCCCcHHHHHHHHHhhhcCC-CCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 035659 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181 (655)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 181 (655)
...|...|..-.+..-.+.|..+|-.. +..+ +.++.+.+++.+.-++ .|+...|..+|+.-++. ++.+..--+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 345788888888877888899999988 7777 5678888888887655 47778888888875554 233333445677
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---C--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 035659 182 HFYAICGDLAMAYCVFVMIGKK---D--VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~---~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (655)
..+.+.++-+.|+.+|+...++ + ...|..||..=..-|+...+..+=+.|.+. .|...+-....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7888889999999999855442 2 356888888888888888888877777653 444444444444443
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=11 Score=35.15 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
+-+.|-.|.-..++..|.+.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcc
Confidence 33444444445566666666665
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=1.7 Score=42.20 Aligned_cols=159 Identities=10% Similarity=0.013 Sum_probs=118.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH----HHHhcCCH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD----MLGRAGLL 435 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~----~~~~~g~~ 435 (655)
-+|+..+|...++++.+. .+.|-..+...=.+|...|+.+.-...++.+.. ...+|...|..+=. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999875 556778888888899999999999999999875 34677655544433 44589999
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPE----NHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
++|++.-++. .+.| |.-.-.++.......|+..++.++..+-...-.. -...|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999886 5444 3455567777888999999999987775543221 23456667777888899999999998
Q ss_pred HHHhCCCccCCc
Q 035659 510 HMRVSGLKKEPG 521 (655)
Q Consensus 510 ~m~~~g~~~~~~ 521 (655)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555444
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.04 E-value=13 Score=34.36 Aligned_cols=215 Identities=19% Similarity=0.145 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 264 EALSIFHELQLSKNVN-PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
.+...+....... .. .....+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.
T Consensus 41 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 41 EALELLEEALELL-PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHhcC-ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555554432 11 12466677777778888888888887777653 234556667777777788888888888888
Q ss_pred hcCCC--C-hhHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc
Q 035659 342 TVKSR--D-VFVWSTMIA-GFAMYGCGREALDLFSRMQEAKVKP----NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413 (655)
Q Consensus 342 ~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 413 (655)
..... + ......... .+...|+.++|...|.+... ..| ....+......+...++.+.+...+......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 196 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL- 196 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-
Confidence 77652 2 223333334 78889999999999999855 333 3334444444467788999999999998753
Q ss_pred CccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 414 GVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 414 ~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 -NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 222 3677888888899999999999998886 33444 455566666666777899999999999999886
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.95 E-value=9.9 Score=39.50 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=67.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--hhHHHHHHHHHH
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-I-VPG--ASVWGALLGACK 462 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~ 462 (655)
..+..++-+.|+.++|.+.|.+|.+.+...-...+...|+..|...+.+.++..++.+-. + -|. ...|+..+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998653332345567789999999999999999998873 1 233 345665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCC
Q 035659 463 IHEN---------------VELAEYACSHLLELEPEN 484 (655)
Q Consensus 463 ~~g~---------------~~~a~~~~~~~~~~~p~~ 484 (655)
..++ -..|.+++.++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 3333 123567788888877643
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.83 E-value=18 Score=35.72 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCC-
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK--CG----NLDKALEVFHTVKSR-------DVFVWSTMIAGFAMYGC- 363 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~- 363 (655)
+++...+++.+.+.|+..+..+|-+-.-.... .. ....|..+|+.|++. +-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55677889999999999888777664433333 22 356788999999863 34455555544 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc-Cc--HHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 364 ---GREALDLFSRMQEAKVKPN-AVTFTNVLCACSHS-GL--VDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 364 ---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~-g~--~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
.+.+..+|+.+.+.|...+ ...+.+-+-++... .. +.++.++++.+.+. ++++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 3567788888888777664 33444444343332 22 45778888888886 89988888776654
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.69 E-value=1.4 Score=36.52 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCh---hHHHHHHHHHHhcC
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPGA---SVWGALLGACKIHE 465 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~---~~~~~ll~~~~~~g 465 (655)
.+..|+++.|++.|.+.... ..-+...||.-..+|.-.|+.++|++=+++. +-+ .. ..|-.-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 45556666666666665531 1223455666666666666666666555553 111 11 12222234467777
Q ss_pred CHHHHHHHHHHHhccCCC
Q 035659 466 NVELAEYACSHLLELEPE 483 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~ 483 (655)
+.+.|..-|+.+-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777776643
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.22 E-value=0.95 Score=40.57 Aligned_cols=88 Identities=24% Similarity=0.223 Sum_probs=67.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG------ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
-+...|++++|..-|... ..-|. .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776654 11121 23445555667888999999999999999999888888888899999999
Q ss_pred chhHHHHHHHHHhCC
Q 035659 501 WDNVSELRKHMRVSG 515 (655)
Q Consensus 501 ~~~a~~~~~~m~~~g 515 (655)
+++|++=++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999888754
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.18 E-value=17 Score=34.43 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..-|.+.|.+..|..-++.+++.-|+.. .++..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34568899999999999999998765443 45667888999999999999887766553
No 270
>PRK15331 chaperone protein SicA; Provisional
Probab=90.17 E-value=7.1 Score=34.27 Aligned_cols=83 Identities=10% Similarity=-0.067 Sum_probs=33.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
+.|++++|..+|+-+...+.. |..-+..|..+|-..+.+++|...|...... + .-|+..+--....|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344444555444444332111 2222333333344444555555554443321 1 112222223344444455555555
Q ss_pred HHHHhC
Q 035659 440 EFIEKM 445 (655)
Q Consensus 440 ~~~~~m 445 (655)
..|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444443
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.05 E-value=0.53 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887773
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.04 E-value=20 Score=35.09 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 176 ISNSLIHFYAICGDLA---MAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~---~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
+...|+.+|...+..+ +|.++++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 34444444422 23 334434455555566677777777777654
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=10 Score=35.27 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhC-----CCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 433 GLLDEAVEFIEKM-----PIVPGASVWGALLGA---CKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 433 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+++.|+..|+.. +.+.+...-..++.. -...+++.+|+.+|+++.....+|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555555555554 122233333444433 3567889999999999887665443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.74 E-value=0.57 Score=29.29 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888743
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.62 E-value=16 Score=36.00 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cC----CHHHHHHHHhhcCC
Q 035659 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI--CG----DLAMAYCVFVMIGK 202 (655)
Q Consensus 155 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~~~~ 202 (655)
++....+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 34556677778888877777665543333322 11 13345555555543
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=17 Score=40.14 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN--CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 361 (655)
+...-|+.+.+...++.|..+-+ ..+..++ ........+-+.+.|++++|...|-+....-.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 44556666677777777766543 3333332 123333444555788999988777654321111 2345666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
.+..+-..+++.+.+.|+.- ...-+.|+.+|.+.++.+.-.++.+...+ |.. ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 67777778888888887653 33345688889999998888777766542 221 11244567777888888888888
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 442 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777643 333333333 4467888888876654
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.12 E-value=18 Score=33.23 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...||-+.--+...|+++.|.+.|+...+....-+....+. .-++.-.|++.-|.+=|...-..-.-.|=...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 34666666667777777777777777776432222222222 2234456777777665554432212222222232222
Q ss_pred HHHhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcC
Q 035659 428 MLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN-------HGALVLLSNIYAKTG 499 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 499 (655)
.+.-+..+|..-+ ++.. ..|..-|...|..+.--.=.+ +.+++++.+-..++ ..+|..|+.-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455555433 3331 235556666555543222111 12333333322222 468899999999999
Q ss_pred CchhHHHHHHHHHhCCC
Q 035659 500 KWDNVSELRKHMRVSGL 516 (655)
Q Consensus 500 ~~~~a~~~~~~m~~~g~ 516 (655)
..++|..+|+......+
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998776543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.80 E-value=2 Score=41.42 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777888888888888888888888888888888888888888888888887766
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.72 E-value=0.74 Score=28.77 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888885543
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.56 E-value=2.6 Score=40.72 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHhhHHH
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEM-----ENVKPDEVTMVA 245 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 245 (655)
..++..++..+..+|+.+.+...++++... |...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346777889999999999999999888763 677999999999999999999999998865 588888877666
Q ss_pred HHHH
Q 035659 246 VLSA 249 (655)
Q Consensus 246 ll~~ 249 (655)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.53 E-value=26 Score=34.32 Aligned_cols=98 Identities=6% Similarity=-0.017 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMD---IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAG 357 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 357 (655)
++..++.++...+..+ +|..+++.+.... +-.+.++-.-++.+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555666666655443 4444555553322 222444444555566667777777777666532 22334444443
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 358 F---AMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 358 ~---~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
+ ... ....|...+..+....+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3 222 234555555555544444443
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.47 E-value=55 Score=38.01 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=21.5
Q ss_pred CCChhHHHHHHHHHHhcC--CHHHHHHHHhhcC
Q 035659 171 EDDLFISNSLIHFYAICG--DLAMAYCVFVMIG 201 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~ 201 (655)
.|+ .-.-.+|..|++.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455 45567889999888 7778877766554
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.47 E-value=7 Score=34.41 Aligned_cols=51 Identities=18% Similarity=0.020 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 429 LGRAGLLDEAVEFIEKMPIVPG---ASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+...|.+++...-.+.+....+ ...-..|.-+-.+.|++..|.+.|.++..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445556655555555421112 12233444555566666666666666554
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.30 E-value=14 Score=32.38 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcch-HHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKH-YTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-y~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~ 469 (655)
.-...++.+++..++..+. -+.|.... -..-...+.+.|++.+|..+|+++. -.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456678888888888775 44565322 2223344677888888888888873 23344444566666655544444
Q ss_pred HHHHHHHHhccCC
Q 035659 470 AEYACSHLLELEP 482 (655)
Q Consensus 470 a~~~~~~~~~~~p 482 (655)
=....+++++.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 4455555665554
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=46 Score=36.72 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=93.4
Q ss_pred HccCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHH
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFED---DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
.+.+.+++|..+-+... |..+ -..++..+|+-+.-.|++++|-...-.|-..+..-|.-.+.-+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34444555554433322 2233 345677888888888899988888888888888888888888887777655433
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
+ +.......+...|..+|..+.. .+. .-|.+.... ++++...-..++++- ..
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~-~~~----------~~F~e~i~~--Wp~~Lys~l~iisa~------------~~ 496 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLA-SDV----------KGFLELIKE--WPGHLYSVLTIISAT------------EP 496 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHH-HHH----------HHHHHHHHh--CChhhhhhhHHHhhc------------ch
Confidence 2 3332223455667777777766 221 123333332 344333333332221 11
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 347 (655)
+..+. ..+..+-..|+..|...+++++|.+.+-...+++
T Consensus 497 q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 497 QIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 11111 1112233337777888888888888777766654
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=48 Score=36.59 Aligned_cols=69 Identities=14% Similarity=0.324 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 465 (655)
....+..|.+.|-++|-.-++..|- .++.+|.-.--+.+++++|.++.++- .|...|..||.-+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCc
Confidence 3445555666666666666666652 13344444444566677777776653 47788888887765544
Q ss_pred C
Q 035659 466 N 466 (655)
Q Consensus 466 ~ 466 (655)
.
T Consensus 705 e 705 (846)
T KOG2066|consen 705 E 705 (846)
T ss_pred H
Confidence 3
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.22 E-value=41 Score=35.11 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCCHHHHH-HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH---HHhcCCHHHHHHHHHhC--CCCCChhH
Q 035659 380 KPNAVTFT-NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM---LGRAGLLDEAVEFIEKM--PIVPGASV 453 (655)
Q Consensus 380 ~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~---~~~~g~~~~A~~~~~~m--~~~p~~~~ 453 (655)
.|+..|+. .++.-+...|...+|...+..+... -.|....|..+|.. ...+| +..+..+++.| .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 34444443 2334444555566666666655432 12334444444432 12233 44445555544 11135555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
|...+.--..+|..+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 5555554445555555544444443
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.64 E-value=21 Score=36.22 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEP----ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999998652 2456667778899999999999999988877433
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.00 E-value=26 Score=31.69 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHH-----HHHHHHhcCCHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTN--VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-----MVDMLGRAGLLDEA 438 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~-----li~~~~~~g~~~~A 438 (655)
+......++.....+-..-++.. +...+...|++++|...++..... |.-..+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555556655432222223322 334577888999998888876532 22333333 34567788999999
Q ss_pred HHHHHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 439 VEFIEKMPIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 439 ~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+..++... .++ ......-...+...|+-++|+..|++.++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998763 122 122333446788899999999999999988743
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.63 E-value=10 Score=34.16 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRD------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTN 388 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ 388 (655)
..+..+.+.|++.|+.++|.+.|.++.+.. +..+-.+|......+++..+...+.+....--.+ +...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356677778888888888888888776542 2356667777777788887777776665432221 2111111
Q ss_pred HHHH--HHccCcHHHHHHHHHHcch
Q 035659 389 VLCA--CSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 389 ll~a--~~~~g~~~~a~~~~~~~~~ 411 (655)
+..+ +...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 3345677777766666543
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.32 E-value=1.8 Score=42.19 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=77.4
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCC
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHEN 466 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 466 (655)
..-|.++|.+++|+..|.... .+.| ++.+|..-..+|.+..++..|+.=-+.. .+. .-.-.|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999876 4566 8888988899999999888776544332 111 012344555555556688
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.++|.+-++.+++++|.+.. |-..|++.....|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999998644 34445544445554433
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.19 E-value=3.6 Score=35.91 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++.+.++.+++-+.-+.|..+..-..-+..+...|+|.+|..+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334444455555544444554444444444444555555555555554433
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.96 E-value=47 Score=33.65 Aligned_cols=149 Identities=12% Similarity=-0.024 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cc
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VK 420 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 420 (655)
....+|..++..+.+.|+++.|...+.++...+... +......-+...-..|+.++|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888888888888888877643211 2233333444556677888888877777652 11111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHH-HHhCCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEF-IEKMPIVPGASVWGALLGACKI------HENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|..+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222222223 378889999999999999988878777776
Q ss_pred HHHh
Q 035659 494 IYAK 497 (655)
Q Consensus 494 ~~~~ 497 (655)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6653
No 294
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.56 E-value=3.5 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQ 311 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 311 (655)
++..+..++...|++++|.++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666664
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.03 E-value=2 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 163 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
++.++.. +.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445544 556677777777777777777775
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.81 E-value=2.4 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777666665
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.65 E-value=31 Score=30.56 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=54.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-HHHHHHH--H
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEV-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-TFVSVLS--A 291 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~--~ 291 (655)
++.+..++|+.-|..+.+.|...=+. .---......+.|+.. .|...|+++-... -.|-.. -..-|=. .
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta------~AV~aFdeia~dt-~~P~~~rd~ARlraa~l 141 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA------AAVAAFDEIAADT-SIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH------HHHHHHHHHhccC-CCcchhhHHHHHHHHHH
Confidence 45566677777777766655431111 0011111223344433 6666666655433 222211 1111111 1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
+...|.++....-.+-+...+-+.....-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 23445555554444444433333333444455555555666666666665554
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.24 E-value=4.5 Score=34.68 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.++.++++.+++.+.-+.|+....-..-+..+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666667666666666666667777777777776666554
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.54 E-value=85 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.703 Sum_probs=20.2
Q ss_pred chHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 035659 420 KHYTCMVDM-----LGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 420 ~~y~~li~~-----~~~~g~~~~A~~~~~~m~~~p 449 (655)
.++..|++. +...|++++|++.++++++-|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 445455443 467899999999999998777
No 300
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.27 E-value=28 Score=38.05 Aligned_cols=200 Identities=16% Similarity=0.269 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHCCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCCH
Q 035659 264 EALSIFHELQLSKNVNPD---EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-------YLTTSLIDMYTKCGNL 333 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~ 333 (655)
+--..+.+|+.+- -.|+ ..+...++-.|....+++...++.+.+.+..-..+. +.|.--++---+-|+-
T Consensus 181 ~l~~~L~~mR~Rl-Dnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRL-DNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHhhc-CCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 5556778887654 3444 345666677777778888888888887763200010 1111112222245777
Q ss_pred HHHHHHHhhcCC------CChh-----HHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccC
Q 035659 334 DKALEVFHTVKS------RDVF-----VWSTM--IAGFAMYGCGREALDLFSRMQEAKVKPNAVT---FTNVLCACSHSG 397 (655)
Q Consensus 334 ~~A~~~~~~~~~------~~~~-----~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g 397 (655)
++|..+.-.+.+ ||.. .|.-| -+.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~-- 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE-- 335 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--
Confidence 777776655543 2332 22222 1335555666778888887766 5665443 3333333221
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.++...++ ... |+ .|-..+++.|.+++-.++++- . ..+.+-.-.+++.+|.++.++|
T Consensus 336 ~Fens~El----q~I-gm--------kLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 336 HFENSLEL----QQI-GM--------KLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred hccchHHH----HHH-HH--------HHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHHHHHH
Confidence 11111111 000 11 233456778877776666532 2 2345556678999999999999
Q ss_pred hccCCCCcchHHHH
Q 035659 478 LELEPENHGALVLL 491 (655)
Q Consensus 478 ~~~~p~~~~~~~~l 491 (655)
.++.|+....-..+
T Consensus 393 fKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 393 FKLKPPVWYLKSTM 406 (1226)
T ss_pred hccCCceehHHHHH
Confidence 99998875444433
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.02 E-value=25 Score=31.64 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC------cc
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG------VK 420 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~ 420 (655)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....++........| ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777889999999999999999999886555543 34667788888889999988888877543111111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
.|..|. +...+++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 33567888888888766
No 302
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.93 E-value=1.6e+02 Score=37.43 Aligned_cols=310 Identities=12% Similarity=0.070 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCCC--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 179 SLIHFYAICGDLAMAYCVFVMI----GKKD--VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
.|..+-.+|+.+..|...+++- .+.+ ..-|-.+...|..-+++++...+...-.. .| ....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 4445667889999999999883 2221 22344455588889999888777663111 11 23334445566
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH-HHHHHhcC
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL-IDMYTKCG 331 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g 331 (655)
.|++. .|...|+++.+.+ ++...+++.++......+.++...-..+-.... ..+....++.+ +.+--+.+
T Consensus 1462 ~g~~~------da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1462 SGNWA------DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred hccHH------HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhc
Confidence 77766 8999999998754 333678888887777777777766654444432 23333333333 44446777
Q ss_pred CHHHHHHHHhhcCCCChhHHHHH-H-HHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH--
Q 035659 332 NLDKALEVFHTVKSRDVFVWSTM-I-AGFAMYGC--GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF-- 405 (655)
Q Consensus 332 ~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~-- 405 (655)
+++....... ..+..+|.+. + ..+.+..+ .-.-.++.+.+++.-+.| +.+|+..|.+..+.++
T Consensus 1533 qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~ 1601 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILM 1601 (2382)
T ss_pred chhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHH
Confidence 8877776665 5566666665 2 22222222 112223444443321111 1122222211111111
Q ss_pred --------HHHcchhcCccCCcc------hHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----ChhHHHHHHHHHH
Q 035659 406 --------FNQMEPVYGVVPGVK------HYTCMVDMLGRAGLLDEAVEFIEKM----PIVP-----GASVWGALLGACK 462 (655)
Q Consensus 406 --------~~~~~~~~~~~p~~~------~y~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~ 462 (655)
-.......++.++.. -|..-+..-....+..+-+--+++. ...| -..+|-.....++
T Consensus 1602 kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1602 KLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred HHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 111111113333321 1221211111111111111111111 1122 2568999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
..|.++.|....-++.+..+ +..+.-.+......|+-..|..+++...+...
T Consensus 1682 ~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999999999888888774 36788899999999999999999998886644
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.92 E-value=37 Score=30.15 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHh-CCCCChhHH
Q 035659 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFIS 177 (655)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~ 177 (655)
..++...|..+|..+++.|++..-..+ ...++-+|.......+-.... ....+.++--.|.+. + ..+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~ql-----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~ 92 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQL-----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAY 92 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH-----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhH
Confidence 345555677777777777765544333 334456666666555533332 223344444444433 2 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
..+++.+...|++-+|.++.+....-+...-..++.+-.+.++..-=..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777778888888877776555555556666666666665544444444433
No 304
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.75 E-value=15 Score=36.50 Aligned_cols=162 Identities=13% Similarity=0.056 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---
Q 035659 349 FVWSTMIAGFAMYGCGREALDLF-------SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--- 418 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~-------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 418 (655)
.++..+..+.++.|++++++..- .+..+. .--...|..+..++.+..++.+++.+-..-....|..|.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds--~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS--DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc
Confidence 45666677788888888776542 222211 011245666666666666677777666554443344442
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----CCCc-
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-----VP--GASVWGALLGACKIHENVELAEYACSHLLELE----PENH- 485 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~- 485 (655)
-....++..+..-.+.++++++.|+.. .+ .| ...++-.|...|.+..|+++|..+..++.++- -++.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 123344556666777899999988875 11 11 24578899999999999999999988887753 2232
Q ss_pred -----chHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 486 -----GALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 486 -----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.....++-++...|+.-+|.+.-++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 244567788889999988888776543
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.57 E-value=34 Score=29.53 Aligned_cols=64 Identities=6% Similarity=-0.090 Sum_probs=30.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-eeHHHHHHHHHHh
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKD-VVSWNSMISGFVQ 217 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~ 217 (655)
..+++.+..++..+.-.. |+ ...-..-.-.+.+.|++++|.++|+.+.+.. ...|..-+.++|-
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 445555555555554432 22 1111122234455666777777776666543 2244444444433
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.56 E-value=5.1 Score=39.14 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=61.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc-
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA- 432 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~- 432 (655)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..+|.+...+..|+.-....... -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 3569999999999999998877 567 9999999999999999888877666555431 12345566655
Q ss_pred ------CCHHHHHHHHHhC-CCCCCh
Q 035659 433 ------GLLDEAVEFIEKM-PIVPGA 451 (655)
Q Consensus 433 ------g~~~~A~~~~~~m-~~~p~~ 451 (655)
|+..+|.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555544443 456763
No 307
>PRK09687 putative lyase; Provisional
Probab=81.53 E-value=56 Score=32.02 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCCh----hHHHHHHHHH
Q 035659 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF----EKAIELYREM 231 (655)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 231 (655)
+|..+....+..+...|..+-...+..-+..+|...=..-+.++.+.|+. .+++.++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444444444444322222222222233333333444444444432 2344444444
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.28 E-value=0.79 Score=39.73 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=61.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhH
Q 035659 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 223 (655)
.++..+.+.+.+.....+++.+...+...+....+.++.+|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777788888888888777667788889999999999888888888773332 444567777777787777
Q ss_pred HHHHHHHHH
Q 035659 224 AIELYREME 232 (655)
Q Consensus 224 A~~~~~~m~ 232 (655)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=6.2 Score=38.18 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=65.7
Q ss_pred hCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC-C------CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCC
Q 035659 64 TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-P------NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136 (655)
Q Consensus 64 ~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 136 (655)
.|....+.+...++..-.... ++++++..+-++.+ | +... .+.++.+.+ -++++++.++..= ...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~--~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~np-IqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE--EIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNP-IQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhcccccc--chhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCc-chhccc
Confidence 355555666666666655555 78888777766553 2 2111 122333332 3567788777766 577888
Q ss_pred CCcchHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 035659 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169 (655)
Q Consensus 137 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 169 (655)
||.+++..+|+.+.+.++...|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888777777766654
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.47 E-value=10 Score=38.93 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PI 447 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~ 447 (655)
+.-++...-.|+.+...+.| ..+.|+++.+.+.+..... -+.....+..+++....+.|++++|..+-+.| .+
T Consensus 313 ~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 313 FAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 33333333345544444433 4556666666666655543 23334455666666666666666666666555 12
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+ +..+...-.......|-++++.-.+++++.++|+
T Consensus 389 e-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 389 E-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred C-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 1 2333333333344555566666666666666543
No 311
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.17 E-value=55 Score=31.11 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+.+-|.+.|.+..|..-+++| +-.+ ....+-.+..+|...|-.++|.+..+-+....|++.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 446678888888887777776 1111 123555677888999999999887766655556553
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.09 E-value=3.8 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666666665554
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.02 E-value=14 Score=35.96 Aligned_cols=98 Identities=10% Similarity=0.186 Sum_probs=70.1
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
.|.+....+...++..-....++++++..+-.+... ..++|-.++ ..-+.++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 455556666677777777778888888877776542 222333222 2345678888888888888999
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
|..+++.++..+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888877776653
No 314
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.38 E-value=1.1e+02 Score=34.10 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 255 (655)
.-..-+..+++.+++.+..+++..- ..+...--....+....|+.++|......+-..|.. .......++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCC
Confidence 3344455566777888777733222 334444556677788888888887777776555422 23334444444443333
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLD 334 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 334 (655)
+. +...+.- +......|+...|..+...+- ++ ......++..+.+-.++
T Consensus 179 lt-----------------------~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~p~~~- 228 (644)
T PRK11619 179 QD-----------------------PLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQNDPNTV- 228 (644)
T ss_pred CC-----------------------HHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHCHHHH-
Confidence 22 2222222 223345667777776666551 22 22344555555443333
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHH--HcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 335 KALEVFHTVKSRDVFVWSTMIAGFA--MYGCGREALDLFSRMQEAK-VKPNAV--TFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 335 ~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
...+.... ++...-...+.++. ...+.+.|..++....... ..+... ....+.......+..+++...++..
T Consensus 229 --~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 229 --ETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred --HHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 33333321 12111111222222 2445688999998875442 333322 2333333333332256777777765
Q ss_pred chhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC-CCChhHHH-HHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPI-VPGASVWG-ALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 410 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
... ..+......-+..-.+.++++.+...+..|+. ..+...|. -+..++...|+.++|...|+++..
T Consensus 306 ~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 306 IMR---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccc---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 432 23444455555566689999999999999942 11223333 355666778999999999999844
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.51 E-value=21 Score=32.58 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCchhhHHHHH
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ---GIKLNCYLTTSLI 324 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~li 324 (655)
-.+.+.|+- +|++.|-++...+ ..+....-..+..|....+.+++.+++-.+.+. +-.+|+.++.+|+
T Consensus 115 y~Wsr~~d~-------~A~~~fL~~E~~~--~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLa 185 (203)
T PF11207_consen 115 YHWSRFGDQ-------EALRRFLQLEGTP--ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLA 185 (203)
T ss_pred HHhhccCcH-------HHHHHHHHHcCCC--CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 345566653 8999999998776 334455555555566678899999999888773 2367888999999
Q ss_pred HHHHhcCCHHHHH
Q 035659 325 DMYTKCGNLDKAL 337 (655)
Q Consensus 325 ~~~~~~g~~~~A~ 337 (655)
..|.+.|+++.|.
T Consensus 186 s~~~~~~~~e~AY 198 (203)
T PF11207_consen 186 SIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcchhhhh
Confidence 9999999988875
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.45 E-value=15 Score=29.24 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566667777777889999999999999999999999999999876533 33337777764
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.39 E-value=3.8 Score=24.44 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555566666666655555553
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.08 E-value=29 Score=27.58 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
..++|..|-+.+...+ .....+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 4567777777776654 22333444445667789999999999999999999999888664 56777777777777777
Q ss_pred CC
Q 035659 234 EN 235 (655)
Q Consensus 234 ~g 235 (655)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 65
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.01 E-value=5 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555566666666666666666655
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.06 E-value=3 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCCchhHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777777654
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.87 E-value=13 Score=29.29 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666677777777889999999999999999999999999998875423 24446666654
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.73 E-value=6.3 Score=27.21 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667889999999999999999999988654
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.64 E-value=36 Score=27.03 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (655)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||+..|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 35555555555443311 233333334567788999999999999999999999887553 567777777778788777
Q ss_pred CCCCCHHHHHH
Q 035659 378 KVKPNAVTFTN 388 (655)
Q Consensus 378 g~~p~~~t~~~ 388 (655)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.53 E-value=5.4 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444444444444444443
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.18 E-value=1 Score=38.98 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555566667777777777766555667777777777777766566655555
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.80 E-value=1.4e+02 Score=33.25 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=43.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhc-CC-----------HHHHHHHHHHHhc-------cCCCCc
Q 035659 427 DMLGRAGLLDEAVEFIEKMPIVPG--ASVWGALLGACKIH-EN-----------VELAEYACSHLLE-------LEPENH 485 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~-g~-----------~~~a~~~~~~~~~-------~~p~~~ 485 (655)
.-+...|++++|..+|+-.+ +.| ..+.+.+++-.... .. ...|..+.+.... ..+.+.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 44567889999999888875 222 23344444333222 22 3344444444332 112223
Q ss_pred chHHHHHHH-----HHhcCCchhHHHHHHHHH
Q 035659 486 GALVLLSNI-----YAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 486 ~~~~~l~~~-----~~~~g~~~~a~~~~~~m~ 512 (655)
.++..|..+ +...|+|++|.+.++.+.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 444444433 467899999987776543
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.63 E-value=6 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=20.4
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3677888888888888888888776543
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.33 E-value=54 Score=35.07 Aligned_cols=150 Identities=19% Similarity=0.131 Sum_probs=100.5
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 408 (655)
-.|+++.|..++..++++ .-+.++.-+...|-.++|+++- ..||.. |. ...+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-Fe----lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQR-FE----LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhhh-hh----hhhhcCcHHHHHHHHHh
Confidence 457788887777776632 3344555566667666666532 222222 22 23467888888887766
Q ss_pred cchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 409 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+.+..|..
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-- 727 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-- 727 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH--
Confidence 53 34568899999999999999999887753 2566777777788877666666666666655532
Q ss_pred HHHHHHHHhcCCchhHHHHHHHH
Q 035659 489 VLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
-.+|...|++++..+++..-
T Consensus 728 ---F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 ---FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHcCCHHHHHHHHHhc
Confidence 34577889999988877543
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=37 Score=36.27 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCcc
Q 035659 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 256 (655)
...+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 344567777776665433 3455677777777777777777776665443 34455555555543
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.14 E-value=55 Score=31.17 Aligned_cols=162 Identities=10% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc----CccCCcch
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQE---AKVK--PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY----GVVPGVKH 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~ 421 (655)
...||..+.+.|++++.++.|++|.. +.+. -...+.++++.--+.+.+.+.-..+++.-.+.. +-.....+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34456666666777776666666642 1111 234456666665555555555555544332211 11122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCc
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKMP-------IVP-------GASVWGALLGACKIHENVELAEYACSHLLELE--PENH 485 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m~-------~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~ 485 (655)
-.-|...|...|.+.+-.++++++. -+. -..+|..=+..|...++-..-..++++.+... -+.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 4566777777777777777776650 011 13456666777778888888888888887754 1233
Q ss_pred chHHHH----HHHHHhcCCchhHHH-HHHHHH
Q 035659 486 GALVLL----SNIYAKTGKWDNVSE-LRKHMR 512 (655)
Q Consensus 486 ~~~~~l----~~~~~~~g~~~~a~~-~~~~m~ 512 (655)
...-.+ +.+..+.|+|++|.. +|+..+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 222211 234556788887753 444444
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.90 E-value=1.4e+02 Score=33.08 Aligned_cols=185 Identities=15% Similarity=0.189 Sum_probs=92.7
Q ss_pred hcCCHHHHHHHHhhcCCC----------ChhHHHHHHHH--HHHcCChHHHHHHHH--------HHHHcCCCCCHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKSR----------DVFVWSTMIAG--FAMYGCGREALDLFS--------RMQEAKVKPNAVTFTN 388 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~~ 388 (655)
-.|++..|...++.+.+. ....+...+.| +...|+.+.|+..|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 467888888888877531 12233333333 344688999999997 4444444444433322
Q ss_pred H--HHHHHc--cCcHHH--HHHHHHHcchhcCccCC--cchHHHH-HHHHHhcC---------CHHHHHHHH-HhCCCCC
Q 035659 389 V--LCACSH--SGLVDE--GRMFFNQMEPVYGVVPG--VKHYTCM-VDMLGRAG---------LLDEAVEFI-EKMPIVP 449 (655)
Q Consensus 389 l--l~a~~~--~g~~~~--a~~~~~~~~~~~~~~p~--~~~y~~l-i~~~~~~g---------~~~~A~~~~-~~m~~~p 449 (655)
+ +..+.. ....++ ..++++.+.......|+ ..++.++ +.++...- .+.++++.. +..+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 111222 222233 67777777653233332 2233333 33332211 233444444 3332111
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCCc-chHH-----HHHHHHHhcCCchhHHHHHHHHHh
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELE---PENH-GALV-----LLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
-....-++++.-.-.|+..+..........+- |+.. ..|. .+.+.|...|+.++|..+..+...
T Consensus 533 l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 12222333433333677777666655555533 2222 2332 355567888999999988876543
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.81 E-value=11 Score=36.25 Aligned_cols=60 Identities=15% Similarity=-0.022 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
++-....|...|.+.+|.++.+++++++|-+...+..|...++..|+--+|.+-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457789999999999999999999999999999999999999998888888887754
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.61 E-value=3.2 Score=24.83 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 334
>PRK09687 putative lyase; Provisional
Probab=74.13 E-value=92 Score=30.51 Aligned_cols=136 Identities=13% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCch
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNC 317 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~ 317 (655)
+..+-...+.++.+.++. +++..+..+... +|...-...+.++.+.+ .-..+...+..+.. .++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~-------~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~ 206 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-------AAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNE 206 (280)
T ss_pred CHHHHHHHHHHHhccCCH-------HHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCh
Confidence 334444455555554432 555555555532 33334444444444432 12334444444442 3455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
.+-...+.++++.|+.+....+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 207 ~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 207 EIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 566666666777776443333444443333 233456666677764 566667666653 23555544444444
No 335
>PRK10941 hypothetical protein; Provisional
Probab=73.33 E-value=15 Score=35.58 Aligned_cols=62 Identities=21% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..+.+-.+|.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34566678899999999999999999999999988888999999999999999988877664
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.87 E-value=84 Score=29.49 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHcchhcCc-cCCcchHHHHHH---HHHhcCCHHHHHHHHHhC---CCCCChhHHHH---HHHH--HHhc
Q 035659 397 GLVDEGRMFFNQMEPVYGV-VPGVKHYTCMVD---MLGRAGLLDEAVEFIEKM---PIVPGASVWGA---LLGA--CKIH 464 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~---~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~~--~~~~ 464 (655)
.+++.|+..|+..-+-|.. +.+...--|++. .-+..|++.+|+++|++. ....+..-|.. ++.+ |.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555666666555432211 222222233433 335678999999999886 23333333332 2222 3333
Q ss_pred -CCHHHHHHHHHHHhccCCCCcc
Q 035659 465 -ENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 465 -g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.+.-.+...+++-.+++|.-..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccc
Confidence 6777888899999999986443
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.86 E-value=6.9 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999998765
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.40 E-value=49 Score=34.24 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred HccCcHHHHHH-HHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHH
Q 035659 394 SHSGLVDEGRM-FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 394 ~~~g~~~~a~~-~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
...|++-.|-+ ++..+.. +.-.|+ +.......+...|.++.+.+.+.... +.....+...++......|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34566666654 5555443 344444 33334445678899999999987762 334566788899999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEe
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLA 536 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~ 536 (655)
....+.|+..+-.++......+..-...|-++++...+++...-. ++....|+.+-.....|-.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~ 440 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFND 440 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccC
Confidence 999999998776565554444444456688899999998887644 3444455544333333433
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.35 E-value=26 Score=27.64 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 035659 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181 (655)
Q Consensus 121 ~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 181 (655)
++..-++.+ ....+.|++....+.|++|.+.+|+..|..+++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNL-FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344444444 445567777778888888888888888877777665321 22334555544
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.37 E-value=7.4 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 035659 424 CMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~ 443 (655)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655554
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.35 E-value=34 Score=30.60 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
+++|...|+++.+.+|.| ..|..-+.+. ++|-+++.++.+.++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 677888888888899977 4555544443 36888888888777643
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.21 E-value=27 Score=24.11 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
....++-++.+.|++++|.+..+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3466888999999999999999988773
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.75 E-value=3.2e+02 Score=34.93 Aligned_cols=310 Identities=13% Similarity=0.040 Sum_probs=150.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhh-cCCCCeeHHHHHHHHHHhCCC
Q 035659 144 FVIKAAARLVQFRVGQAIHGMVIKSSF--EDDLFISNSLIHFYAICGDLAMAYCVFVM-IGKKDVVSWNSMISGFVQGGF 220 (655)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~ 220 (655)
.+..+-.+.+.+..|...++.-..... ......+-.+...|+..+++|...-+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 333455566777777777766311100 11233455556688888888877776653 33332 2344556677899
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHhccCCH
Q 035659 221 FEKAIELYREMEMENVKPD-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV-LSACAQLGAM 298 (655)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~l-l~~~~~~g~~ 298 (655)
+..|...|+.+.+.+ |+ ..+++-++..-...+.+. .++...+..... ..+....++++ ..+-=+.+++
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~------t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLS------TEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchh------HHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcch
Confidence 999999999998764 44 667777776666666654 444333333221 12222233322 2333566777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHH--HHHHHhc--CCHHHHHHHHhhcCC----C---------ChhHHHHHHHHHHHc
Q 035659 299 DIGVQIHAKMKKQGIKLNCYLTTSL--IDMYTKC--GNLDKALEVFHTVKS----R---------DVFVWSTMIAGFAMY 361 (655)
Q Consensus 299 ~~a~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~--g~~~~A~~~~~~~~~----~---------~~~~~~~li~~~~~~ 361 (655)
+..+..+. +.+ ..+|.+. +....+. .+.-.-.+..+.+.+ + =...|..++....-.
T Consensus 1535 D~~e~~l~---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77776665 111 1122221 2211111 111011111111110 0 012344444333222
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCcHHHHHHHHHH-cchhcCccCC-----cchHHHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAV------TFTNVLCACSHSGLVDEGRMFFNQ-MEPVYGVVPG-----VKHYTCMVDML 429 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~-~~~~~~~~p~-----~~~y~~li~~~ 429 (655)
........++ ++.++.. -|..-+.--....+..+-+--+++ +... ...|+ ...|.......
T Consensus 1608 el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~-~~~~~~~~~~ge~wLqsAria 1680 (2382)
T KOG0890|consen 1608 ELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL-RMRSNLKSRLGECWLQSARIA 1680 (2382)
T ss_pred HHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH-hccccccchhHHHHHHHHHHH
Confidence 1111111111 1222221 111121111111112221111111 1111 11222 45677777777
Q ss_pred HhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 430 GRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
..+|+++.|...+-.. ... -+..+--...-..+.|+...|+.++++.++..
T Consensus 1681 R~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1681 RLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7799999998766544 322 33455566677889999999999999999754
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.50 E-value=1.9e+02 Score=31.71 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH----HcCChHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK-CGNLDKALEVFHTVKSR-DVFVWSTMIAGFA----MYGCGREALDL 370 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~ 370 (655)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|...... .+.+.-.+...|. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 55667777777777663 333333222222222 23566777777766543 2222222222222 22356677777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH-----Hh--cCCHHHHHHHHH
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML-----GR--AGLLDEAVEFIE 443 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~-----~~--~g~~~~A~~~~~ 443 (655)
+++.-+.| .|-..--...+..+.. +..+.+...+..+.+. +.+--...-..+++.. .+ ..+.+.+..++.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 77777766 3332222233333333 5555555554444332 2221111111111110 00 123445555555
Q ss_pred hCCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---CchhHHHHHHHHHh
Q 035659 444 KMPIVPGASVWGALLGACKIH----ENVELAEYACSHLLELEPENHGALVLLSNIYAKTG---KWDNVSELRKHMRV 513 (655)
Q Consensus 444 ~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 513 (655)
+...+-+......|...|..- .+++.|...+.++.+.. ......++.++...- .+..|.++++...+
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 543333444444444443322 35667777776666655 455666666665421 14566666666554
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.48 E-value=1.3e+02 Score=29.37 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
.+.....|..+|.+.+|.++-+....- +...|-.++..++..|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455666677777776666665542 44566667777777777666666666654
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.05 E-value=60 Score=29.71 Aligned_cols=42 Identities=14% Similarity=-0.070 Sum_probs=19.8
Q ss_pred cCCchHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSS---FEDDLFISNSLIHFYAICGDLAMA 193 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A 193 (655)
..+.+.+++++-.+++.. -.+|+.++.+|++.|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555554444421 133444555555555555555444
No 347
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=16 Score=34.07 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=49.3
Q ss_pred CHHHHHHHHHh-CCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 434 LLDEAVEFIEK-MPIVPGAS-VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 434 ~~~~A~~~~~~-m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
+++.|..-+.+ +.+.|++. -|..=+-.+.+..+++.+..--.+++++.|+.....+.++........+++|+..+++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444444333 24456653 33444455556667777777777777777777677777777777777777777777666
Q ss_pred Hh
Q 035659 512 RV 513 (655)
Q Consensus 512 ~~ 513 (655)
.+
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 43
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.34 E-value=2.3e+02 Score=31.53 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=111.8
Q ss_pred CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCC--cchHHHHHHHHH-ccCCchHHHHHHHHHHHhCCCCChh-
Q 035659 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN--EFTFPFVIKAAA-RLVQFRVGQAIHGMVIKSSFEDDLF- 175 (655)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd--~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~- 175 (655)
+.++..|..||. .|+..++.......+.|. ..++-.+...+. ...+++.|+..+++.+...-.++..
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345566777775 455666666223334443 233444444444 6678999999988776544333222
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHhhcCCC----CeeHHH----HH-HHHHHhCCChhHHHHHHHHHHHCC---CCCC
Q 035659 176 ----ISNSLIHFYAICGDLAMAYCVFVMIGKK----DVVSWN----SM-ISGFVQGGFFEKAIELYREMEMEN---VKPD 239 (655)
Q Consensus 176 ----~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 239 (655)
....++..|.+.+... |.+..++..+. ....|. -+ +..+...+++..|++.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2335567777777666 88777765431 122232 22 223333479999999998886542 3444
Q ss_pred HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC-------C-CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 035659 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK-------N-VNPDEFTFVSVLSACA--QLGAMDIGVQIHAKMK 309 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~-------~-~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 309 (655)
...+..++.+........ ++++++.++++.... . -.|-..+|..++..++ ..|+++.+.+.++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~----~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGS----PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666666665543332 336666666663221 0 1345667777877764 5577767776655553
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.29 E-value=1.8e+02 Score=30.31 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCCChhh--hhHHHHhhhcCCCCChHHHHHHhhcCCCCCcc--hHHHHHHHHHhCCCcHHHHHHHHHhh
Q 035659 55 KQIHTQMLRTGLFFDPYS--ASKLFTPCALGTFSSLEYAREMFDQIPQPNLY--TWNTLIRAYSSSAEPIQSFMIFLQLV 130 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 130 (655)
..+...+++.|..++... ..+.+...++.| +.+-+..+++.-..++.. ...+.+...+..|+.+.+..+++.-
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~- 91 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFR--DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG- 91 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC-
Confidence 345566677787765432 444555666777 888777777765444332 1123445556778876655555432
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---Ce
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI--SNSLIHFYAICGDLAMAYCVFVMIGKK---DV 205 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~---~~ 205 (655)
.......+..-. +.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.-... |.
T Consensus 92 ~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~ 166 (413)
T PHA02875 92 KFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC 166 (413)
T ss_pred CcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Confidence 110001111112 233334455655 45555666776655322 234556667788888877777654432 33
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH---HHHHHHHhccCcc
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM---VAVLSACAKKRDL 256 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~ 256 (655)
.-++.|..+ +..|+. ++++.+.+.|..|+...- .+++...+..|+.
T Consensus 167 ~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~ 215 (413)
T PHA02875 167 CGCTPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKI 215 (413)
T ss_pred CCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH
Confidence 333444433 344553 345556677776664321 2344434444554
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.74 E-value=22 Score=32.78 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+.+.-+..+.+.+.+++|+...+.- .-+|. ...-..++..++..|++++|..-++-+-++.|++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445566778888999998877653 44554 45667788889999999999988888888888654
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.23 E-value=1.4e+02 Score=28.64 Aligned_cols=144 Identities=18% Similarity=0.280 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSR---------------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAV 384 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 384 (655)
..|...|...|.+.+-.++++++... =...|..=|..|....+-.+-..+|++...-. --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555566666666666666555320 12356666777777777666677777665422 223333
Q ss_pred HHHHHHHHHH-----ccCcHHHHHHHHHHcchhcCcc--CCc---chHHHHHHHHHhcCC----HHHHHHHHHhCCCC--
Q 035659 385 TFTNVLCACS-----HSGLVDEGRMFFNQMEPVYGVV--PGV---KHYTCMVDMLGRAGL----LDEAVEFIEKMPIV-- 448 (655)
Q Consensus 385 t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~~---~~y~~li~~~~~~g~----~~~A~~~~~~m~~~-- 448 (655)
...+|+-|. +.|.+++|..-|-++-+.|.-. |.. --|..|.+++.+.|- -.+|. |.+
T Consensus 229 -ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK------PyKNd 301 (440)
T KOG1464|consen 229 -IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK------PYKND 301 (440)
T ss_pred -HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC------CCCCC
Confidence 335566553 4577777765444433333322 222 235556666666652 11111 333
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHH
Q 035659 449 PGASVWGALLGACKIHENVELAEY 472 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g~~~~a~~ 472 (655)
|.......|+.+|..+ +..+-++
T Consensus 302 PEIlAMTnlv~aYQ~N-dI~eFE~ 324 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQNN-DIIEFER 324 (440)
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHH
Confidence 4456677788887543 3443333
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.75 E-value=24 Score=37.40 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=69.0
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
-.|+...|...+..... ..|. ......|...+.+.|...+|-.++.+. .+ ...+.++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 45777777777776653 3332 234456667777778888887777553 22 23456777888888888899999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
++.|+++++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999888877666655433
No 353
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=63.67 E-value=1.9e+02 Score=30.00 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q 035659 209 NSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m 231 (655)
..+|+-|...|+..+..+.++.+
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHc
Confidence 45666666666666666665543
No 354
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.22 E-value=1.6e+02 Score=28.92 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=37.2
Q ss_pred hCCCCChhHHHHHH-HHHHhcCC-HHHHHHHHhhcC-CCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 035659 168 SSFEDDLFISNSLI-HFYAICGD-LAMAYCVFVMIG-KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV 244 (655)
Q Consensus 168 ~g~~~~~~~~~~li-~~~~~~g~-~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 244 (655)
.| .+...+++.|. +-+.+.|- ..-|.++|.... +.| .|.+|+.+.+.+.-+.-+++| +|+..+--
T Consensus 160 nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E 227 (412)
T KOG2297|consen 160 NG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEFF--------PPNKRSVE 227 (412)
T ss_pred CC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHhc--------CCcchhHH
Confidence 35 34444555544 33444442 344566665433 232 356666666655555544443 56655555
Q ss_pred HHHHHHhccC
Q 035659 245 AVLSACAKKR 254 (655)
Q Consensus 245 ~ll~~~~~~~ 254 (655)
.....+...|
T Consensus 228 ~Fak~Ft~ag 237 (412)
T KOG2297|consen 228 HFAKYFTDAG 237 (412)
T ss_pred HHHHHHhHhh
Confidence 5554444444
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.63 E-value=10 Score=33.84 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC----chhHHHHHHHHH
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGK----WDNVSELRKHMR 512 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 512 (655)
+++|+.-|++++.++|+...++..++++|...+. ..+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5677888888899999999999999999987654 345555555443
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.26 E-value=52 Score=28.38 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCCCh--hhhhHHHHhhhcCCCCChHHHHHHhhcCC---------CCCcchHHHHHHHHHhCCC-cHHHH
Q 035659 56 QIHTQMLRTGLFFDP--YSASKLFTPCALGTFSSLEYAREMFDQIP---------QPNLYTWNTLIRAYSSSAE-PIQSF 123 (655)
Q Consensus 56 ~~~~~~~~~g~~~~~--~~~~~ll~~y~~~g~~~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~ 123 (655)
+....|.+.+..++. ...|.+++-.+..+ ++.....+++.+. ..+-.+|++++.+.++..- ---+.
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~--nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~ 100 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQ--NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSL 100 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHH
Confidence 333445656666554 45677877767666 7777777777664 2455678888888866555 33466
Q ss_pred HHHHHhhhcCCCCCCcchHHHHHHHHHcc
Q 035659 124 MIFLQLVYNSPYFPNEFTFPFVIKAAARL 152 (655)
Q Consensus 124 ~~~~~m~~~~~~~pd~~t~~~ll~~~~~~ 152 (655)
.+|..| ++.+.++++.-|..++++|.+.
T Consensus 101 ~Lf~~L-k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 101 TLFNFL-KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHHHcC
Confidence 778888 6677788888888888887664
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.97 E-value=1.1e+02 Score=26.54 Aligned_cols=79 Identities=8% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---------CCCeeHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHhhHHHH
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIG---------KKDVVSWNSMISGFVQGGF-FEKAIELYREMEMENVKPDEVTMVAV 246 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (655)
.|.++.-.+..+++.....+++.+. ..+-.+|++++.+..+..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555555555555555555443 2466789999999977666 44567899999998999999999999
Q ss_pred HHHHhccCc
Q 035659 247 LSACAKKRD 255 (655)
Q Consensus 247 l~~~~~~~~ 255 (655)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 999887643
No 358
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.87 E-value=84 Score=25.42 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=55.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (655)
....++|..|.+++...+ .....+--..+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 345788888998888876 3344444555667888999999965555666689999887765 4788888888888877
Q ss_pred HHCC
Q 035659 232 EMEN 235 (655)
Q Consensus 232 ~~~g 235 (655)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.45 E-value=89 Score=30.18 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=56.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh-
Q 035659 355 IAGFAMYGCGREALDLFSRMQE--AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR- 431 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~- 431 (655)
|.+++..+++.+++...-+--+ ..++|...-...+ -|++.+....+.++-..-... .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6788888888888776544432 2245544444433 478888888887777766554 222233448777776654
Q ss_pred ----cCCHHHHHHHHHh
Q 035659 432 ----AGLLDEAVEFIEK 444 (655)
Q Consensus 432 ----~g~~~~A~~~~~~ 444 (655)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6999999998854
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.21 E-value=37 Score=31.72 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCHH-------HHHHHHHHHhccC--CC----CcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 452 SVWGALLGACKIHENVE-------LAEYACSHLLELE--PE----NHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..+.-+...|+..|+.+ .|.+.|+++.+.+ |. .......++.++.+.|+.++|.+.|..+...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555677777744 4445555555443 22 23566778999999999999999999887754
No 361
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.56 E-value=56 Score=30.78 Aligned_cols=55 Identities=15% Similarity=-0.003 Sum_probs=44.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.++...|++-++++.-..++...|.|..+|+.-+.+.+..=+.++|.+=+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4556778999999999999999999999999888887777666777777766655
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.48 E-value=19 Score=28.20 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=29.5
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 472 YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..+++.++.+|+|...-..++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455666677777777777788888888888887777766654
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.66 E-value=2.6e+02 Score=30.24 Aligned_cols=121 Identities=10% Similarity=0.010 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P-IVPGASVWGALLGA 460 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~ 460 (655)
..+|..-+.--...|+.+...-+|+...- .+..=...|--.+.-....|+.+-|..++... . ..|+......+-.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44566666666666777776666666542 11112334444444444456666666555443 1 11222222222222
Q ss_pred -HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 461 -CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 461 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
+-..|++..|..+++.+.+.-|.....-..-++...+.|..+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 334567777777777776655554444444455566666666665
No 364
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.23 E-value=3.7e+02 Score=31.61 Aligned_cols=256 Identities=13% Similarity=0.026 Sum_probs=145.4
Q ss_pred HHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHH
Q 035659 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273 (655)
Q Consensus 194 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~ 273 (655)
..+.+.+..+|...-..-+..+.+.+. .+++..+.+..+. +|...-...+.++.+.+... .....+..+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~------~~~~~L~~~L 693 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVL------PPAPALRDHL 693 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcc------CchHHHHHHh
Confidence 355556667777777777777777765 4455555555532 34444445555554442211 1112333333
Q ss_pred HCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH
Q 035659 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST 353 (655)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 353 (655)
. .+|...-...+.++...+.-+ .. .+-.+.+ .+|..+-...+.++.+.+..+. +......++...-..
T Consensus 694 ~----~~d~~VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 694 G----SPDPVVRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIA 761 (897)
T ss_pred c----CCCHHHHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHH
Confidence 2 245555556666665543211 11 2222222 4566666667777776655433 344455667777777
Q ss_pred HHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc
Q 035659 354 MIAGFAMYGCGRE-ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432 (655)
Q Consensus 354 li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 432 (655)
.+.++...+..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++++.
T Consensus 762 aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 762 VAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhc
Confidence 7777777765442 4455555554 35666667778888888876555444444443 24555666677788887
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 433 GLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 433 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+.- ++...+..+--.|+..+-...+.++...+....+...+..+++
T Consensus 835 ~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 835 AAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred ccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 763 4555554442356777777777777765444566667766665
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.14 E-value=6 Score=38.83 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
+++.+.++...|++-+..+++++|+...-|-.-..+....|.|++|.+.+....+.++.
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 34444455555555555555555555555555555555555555555555555554443
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.48 E-value=40 Score=31.17 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=28.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 035659 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV 198 (655)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 198 (655)
.-++.+.+.+.+.++.+....-++.. +.|...-..|++.|+-.|++++|..-++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444445555555555555555543 3444445555566666666666655443
No 367
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.31 E-value=1e+02 Score=24.93 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46778888887777653 333444444556778888888855555555678888876644 467777888888887766
Q ss_pred cCCCCCHHHH
Q 035659 377 AKVKPNAVTF 386 (655)
Q Consensus 377 ~g~~p~~~t~ 386 (655)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 3444444
No 368
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.25 E-value=81 Score=28.80 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVPGA-SVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.++.+.+.++.|+.--.+. .+.|+- ...-.-..+|.+...+++|+.-+.++++.+|...
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 3444555555555443332 333321 1111223456677788888888889888888654
No 369
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.96 E-value=20 Score=39.94 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
+.++++.+.+.+.-.--| -++|.-+.+.|-.+-|+.+.+.=..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666666655433322 134555667777777776655433322 22456899999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 441 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
.-.++. |..+|..|+......|+.+.|+..+++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 888875 78899999999999999999999998876543
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.70 E-value=23 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC
Q 035659 211 MISGFVQGGFFEKAIELYREMEMEN 235 (655)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g 235 (655)
|..+|.+.|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777777777777776543
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.47 E-value=2.7e+02 Score=29.53 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=77.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
.|....-++++.++..-.+.-.+.+..+|.. .+-..|..++..|.++ ..++-..+++++.+. .-|.+.+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 3444444555555555555555555555442 3445555666666665 445555566655553 2333333333333
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCC------cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCChhHHHHHHHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPG------VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPGASVWGALLGACK 462 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 462 (655)
+...++.+.+..+|..+.. .+.|. .+.|.-|+..- ..+.+.-+.+..++ +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333555566666655543 22231 12333333211 22333344443333 11112233333334455
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 463 IHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
...++.+|++++..+++.+..|..+-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHH
Confidence 56666666666666666555444333
No 372
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.35 E-value=1e+02 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 325 (655)
+..+-+..+.... +.|+.....+.+.+|.+.+++..|.++++-+...- ......|..+++
T Consensus 28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 4444455554445 77888888888888888888888888888776532 222225555543
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.91 E-value=8.4 Score=39.70 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=62.7
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcCccCCcchH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCC
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-TCMVDMLGRAGLLDEAVEFIEKM-PIVPGA-SVWGALLGACKIHEN 466 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~ 466 (655)
+......+.++.|..++.++. .+.|+-..| ..=..++.+.+++..|+.=+.+. ...|+. ..|-.=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445566778888988888887 457764444 33336777888887776554443 444442 233333456667778
Q ss_pred HHHHHHHHHHHhccCCCCcch
Q 035659 467 VELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~ 487 (655)
+.+|...|+....+.|+++.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888888888888877644
No 374
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.89 E-value=1.2e+02 Score=32.39 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSR--DVF---VWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35667788889999999888888521 122 233333344444334444444544444
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.28 E-value=52 Score=28.29 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 435 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456778888885 33333444555678899999999999999999999988888888887665443
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.28 E-value=1.6e+02 Score=27.82 Aligned_cols=143 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCch
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~ 156 (655)
+..|++.- ++..|...++++.+| ..+-.++++ |.+-.+..---.+.+-. ...+++-+..-+..++ +...||..
T Consensus 137 MEiyS~tt--RFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~-k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 137 MEIYSNTT--RFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVA-KAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHcccc--hhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHH-HHhCCCCCcchHHHhh--hhccchHH
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 035659 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENV 236 (655)
Q Consensus 157 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (655)
+|...++.-...- .+-.+..+|+-..+|.......|+..+.+. ++++|.+++.++.+.|+
T Consensus 210 QalNnLQst~~g~-------------------g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 210 QALNNLQSTVNGF-------------------GLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHHHhccc-------------------cccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCC
Q ss_pred CCCHhhHHHH
Q 035659 237 KPDEVTMVAV 246 (655)
Q Consensus 237 ~p~~~t~~~l 246 (655)
.|....-+..
T Consensus 270 sp~Dii~~~F 279 (333)
T KOG0991|consen 270 SPEDIITTLF 279 (333)
T ss_pred CHHHHHHHHH
No 377
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.20 E-value=3.4e+02 Score=30.33 Aligned_cols=246 Identities=10% Similarity=-0.064 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEF--TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
++.|..++.+......+.+... ....+.......+...++...+....... .+..+...-+..-.+.++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 4588888887755543443322 22233222233322445555555443322 2344445555555688899998888
Q ss_pred HhhcCCC--C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc-hhcCc
Q 035659 340 FHTVKSR--D-VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME-PVYGV 415 (655)
Q Consensus 340 ~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~~~~ 415 (655)
+..|... + ..-.-=+..++...|+.++|..+|++.... .+|-.++.+ .+.|..-. ... .... ....+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~-~~~-~~~~~~~~~~ 405 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYP-LKI-DKAPKPDSAL 405 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCC-CCC-CCCCchhhhh
Confidence 8888642 2 122223455666689999999999887431 235444432 22231100 000 0000 00000
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCCcchHHHHH
Q 035659 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE---PENHGALVLLS 492 (655)
Q Consensus 416 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~ 492 (655)
. . ..-..-+..+...|+..+|...+..+-...+......+.......|..+.+..+..+....+ -.-+..|...+
T Consensus 406 ~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~ 483 (644)
T PRK11619 406 T-Q-GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEF 483 (644)
T ss_pred c-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHH
Confidence 0 0 01122345667889999998888776323455566666666778888888887776543321 11234566667
Q ss_pred HHHHhcCCchhHHHHHHHHHhCCCccCC
Q 035659 493 NIYAKTGKWDNVSELRKHMRVSGLKKEP 520 (655)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 520 (655)
..+++.-.++.+.-.--...|.++.|..
T Consensus 484 ~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 484 RRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 7777666677665433334466776543
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.12 E-value=87 Score=24.24 Aligned_cols=66 Identities=9% Similarity=-0.029 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHH
Q 035659 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAI 225 (655)
Q Consensus 158 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 225 (655)
+.+++..+++.|+ .+......+-..--+.|+.+.|+++++.++ +..-.|..+++++.+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4566677776663 222233333332235688999999999999 88888999999998888766554
No 379
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.71 E-value=93 Score=24.09 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 035659 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
..|+.+.|++++..+. +....|...+.++.+.|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777777655443
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.69 E-value=72 Score=27.09 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhcc-CCCC-cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 466 NVELAEYACSHLLEL-EPEN-HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~-~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+..+++.+++.+.+. .|.. ....+.|+-++.+.|+++++.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 345566666666652 2322 22333455566666666666666665554
No 381
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=3.8e+02 Score=30.38 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=105.2
Q ss_pred HHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHH----HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHc
Q 035659 76 LFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR----AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151 (655)
Q Consensus 76 ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 151 (655)
-+++..+-. .++.|..+-..-.-+ ...-..+.. -+-+.|++++|..-|-+-+ .-+.| ..+++-+..
T Consensus 340 kL~iL~kK~--ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKKN--LYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHhh--hHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhcC
Confidence 345555555 677777776654432 222233333 3346799999998887651 11223 345555555
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCee-HHHHHHHHHHhCCChhHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVV-SWNSMISGFVQGGFFEKAIELYRE 230 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 230 (655)
...+...-..++.+.+.|+.... --..|+.+|.|.++.+.-.++.+...+-... -....+..+.+.+-.++|..+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 56666677778888888865444 4467999999999999999888877632221 345667777777777777665544
Q ss_pred HHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHH
Q 035659 231 MEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273 (655)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~ 273 (655)
... .......++ -..++++ +|++.+..+.
T Consensus 489 ~~~-----he~vl~ill---e~~~ny~------eAl~yi~slp 517 (933)
T KOG2114|consen 489 FKK-----HEWVLDILL---EDLHNYE------EALRYISSLP 517 (933)
T ss_pred hcc-----CHHHHHHHH---HHhcCHH------HHHHHHhcCC
Confidence 332 222222222 2344443 7777776653
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.53 E-value=23 Score=20.67 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
|+.+.+..+++++++..|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877766665543
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.59 E-value=1.1e+02 Score=29.63 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhc-CCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI-- 186 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~-~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 186 (655)
|.+++..++|.+++...-+..+. ..++|... ..-|-.|++.+.+..+.++-..-+...-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 78888889998888765444111 22333332 22333466777777777776655554323334456777666654
Q ss_pred ---cCCHHHHHHHH
Q 035659 187 ---CGDLAMAYCVF 197 (655)
Q Consensus 187 ---~g~~~~A~~~f 197 (655)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666654
No 384
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.24 E-value=83 Score=34.14 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC------CeeHHHHHHHHHHhCCChhH--HHHHHHHH-HHCCCCCCHhhHHHHHHH
Q 035659 179 SLIHFYAICGDLAMAYCVFVMIGKK------DVVSWNSMISGFVQGGFFEK--AIELYREM-EMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~~g~~p~~~t~~~ll~~ 249 (655)
+|..+|...|++-.+.++++..... =...||..|+.+.++|.++- ...-..+. ...-+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888889998888888876542 23468888888888886642 22222222 333466677777777766
Q ss_pred Hhc
Q 035659 250 CAK 252 (655)
Q Consensus 250 ~~~ 252 (655)
..+
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 555
No 385
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.16 E-value=4.7e+02 Score=30.73 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHH
Q 035659 280 PDEFTFVSVLSACAQLGAMDI-GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL-EVFHTVKSRDVFVWSTMIAG 357 (655)
Q Consensus 280 p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~ 357 (655)
++...-.....++...+..+. +...+..+.+ .++..+-.+.+.++.+.|..+.+. .+...+..+|...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 444555555555555554332 2333333333 345666666777777777654442 33344445555454555566
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
+...+. +++...+..+.+ .|+...=...+.++.+...-..+...+..+.+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666554 345555555553 34555545555666654333445555555543
No 386
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=3.2e+02 Score=28.80 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHcCChHHHHHHHHHHHHcC-CCCCH--H-----HHHHHHH-HHHccCcHHHHHHHHHHcchhcCccCCcch--HHHHHH
Q 035659 359 AMYGCGREALDLFSRMQEAK-VKPNA--V-----TFTNVLC-ACSHSGLVDEGRMFFNQMEPVYGVVPGVKH--YTCMVD 427 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g-~~p~~--~-----t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--y~~li~ 427 (655)
.-.|++.+|++-...|.+-- -.|.. . ....++. -|+..+.++.|...|....+. --.-|... -..+.-
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHH
Confidence 44678888888888777531 12321 1 1122222 245567788888777776553 22222222 233455
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCChhHHHH--------HHHH--HHhcCCHHHHHHHHHHHhccCCCCcch--------HH
Q 035659 428 MLGRAGLLDEAVEFIEKMPIVPGASVWGA--------LLGA--CKIHENVELAEYACSHLLELEPENHGA--------LV 489 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--------ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~--------~~ 489 (655)
.|.+.|+.+.-.++++.++ .++..++.+ ++.+ ....+++.+|...+.+.+ +-.|..- ..
T Consensus 413 ~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L--kmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL--KMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--hhcchhhHHHHHHHHHH
Confidence 6777777777777777763 122111111 1111 235567777777776654 3334332 23
Q ss_pred HHHHHHHhcCCchhHHH
Q 035659 490 LLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 490 ~l~~~~~~~g~~~~a~~ 506 (655)
.|+..+...|+..++.+
T Consensus 490 LLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHhcchHHHHh
Confidence 45555566666666544
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.04 E-value=36 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 035659 355 IAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555555443
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.49 E-value=92 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=25.2
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
.-|..|+.-|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999877
No 389
>PRK12798 chemotaxis protein; Reviewed
Probab=50.45 E-value=3.1e+02 Score=28.38 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHhhcCCC----ChhHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCcHH
Q 035659 330 CGNLDKALEVFHTVKSR----DVFVWSTMIAGFA-MYGCGREALDLFSRMQEAKVKPNAV----TFTNVLCACSHSGLVD 400 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 400 (655)
.|+.++|.+.+..+... ....+-.|+.+-. ...+..+|+++|+...- ..|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988753 4556777776644 45678999999998876 345433 3334445567889999
Q ss_pred HHHHHHHHcchhcCccCCcchH-HHHHHHHHh---cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPGVKHY-TCMVDMLGR---AGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~~~~y-~~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
++..+-......|...|=...| ..++..+.+ .-..+.-..++..|.-.--..+|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8877766666555444433222 222333333 334455566666664222246888888888999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHh-----cCCchhHHHHHHHHHh
Q 035659 477 LLELEPENHGALVLLSNIYAK-----TGKWDNVSELRKHMRV 513 (655)
Q Consensus 477 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~ 513 (655)
++.+... ...-...+..|.. ..+.+++.+.+..+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9998632 2222333344432 3345556555544433
No 390
>PRK09169 hypothetical protein; Validated
Probab=50.21 E-value=6.8e+02 Score=32.30 Aligned_cols=440 Identities=10% Similarity=-0.001 Sum_probs=242.3
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcC----C-------CCCcchHHHHHHHHHhCCCcHHHHHHHHHhh---hcC
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQI----P-------QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV---YNS 133 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~----~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~ 133 (655)
.++.....++++++|.. +...+...-+.+ - .-|......+++++++.-+-......-..+- ...
T Consensus 160 l~~~~v~~lLNalSKWP--~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~ 237 (2316)
T PRK09169 160 LDAISFALLLNALSKWP--DNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADE 237 (2316)
T ss_pred hhhHHHHHHHHHhccCC--CchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 45666777888888876 544433322222 1 1234445566777777665444333322220 111
Q ss_pred -C--CCCCcchHHHHHHHHHccCCchHHHHHHHHHHH-------hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh----
Q 035659 134 -P--YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK-------SSFEDDLFISNSLIHFYAICGDLAMAYCVFVM---- 199 (655)
Q Consensus 134 -~--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---- 199 (655)
+ ...+......+|++++|-.+-+.+.+.-..+-. .....|..-....+++++|..+-+.+...-..
T Consensus 238 ~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~r 317 (2316)
T PRK09169 238 PGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAER 317 (2316)
T ss_pred hHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 1 123566788999999998776655544333221 11234555666778888888765543332222
Q ss_pred cCC-------CCeeHHHHHHHHHHhCCChhHHH----HHHHHHHHCC---CCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 200 IGK-------KDVVSWNSMISGFVQGGFFEKAI----ELYREMEMEN---VKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 200 ~~~-------~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
+.. -|..-....+.++.+-.+.+.+. .+-..+...- -.-+..-....+++++|-+.-+..+ .-|
T Consensus 318 L~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr--~AA 395 (2316)
T PRK09169 318 LAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACR--AAA 395 (2316)
T ss_pred HHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHH--HHH
Confidence 211 24444566778888877655432 2333332211 2446677888899999876543111 124
Q ss_pred HHHHHHHHHCCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---c----CCCCchhhHHHHHHHHHhcCCHHHH
Q 035659 266 LSIFHELQLSKN--VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK---Q----GIKLNCYLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 266 ~~l~~~m~~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~----g~~~~~~~~~~li~~~~~~g~~~~A 336 (655)
..+...+....+ -..|..-....+.+|++.+.-+.+.+....+.. . .-..+..-....+.+++|.++.+..
T Consensus 396 ~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c 475 (2316)
T PRK09169 396 EALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAAC 475 (2316)
T ss_pred HHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHH
Confidence 444444444321 135677888999999998876644433322211 1 0134556667788888888775533
Q ss_pred ----HHHHhhcCC-------CChhHHHHHHHHHHHcCChHHHH----HHHHHHHHc---CCCCCHHHHHHHHHHHHccCc
Q 035659 337 ----LEVFHTVKS-------RDVFVWSTMIAGFAMYGCGREAL----DLFSRMQEA---KVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 337 ----~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~ 398 (655)
..+...+.. -+..-....+.++++-+..+.+. .+...+... --.-|..-+..++.++++-.+
T Consensus 476 ~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~ 555 (2316)
T PRK09169 476 RRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPE 555 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCC
Confidence 333333321 24566777888888887765432 233322221 123466777889999998776
Q ss_pred HHHH----HHHHHHcchhcC--ccCCcchHHHHHHHHHhcCCHHH----HHHHHHhC----C--CCCChhHHHHHHHHHH
Q 035659 399 VDEG----RMFFNQMEPVYG--VVPGVKHYTCMVDMLGRAGLLDE----AVEFIEKM----P--IVPGASVWGALLGACK 462 (655)
Q Consensus 399 ~~~a----~~~~~~~~~~~~--~~p~~~~y~~li~~~~~~g~~~~----A~~~~~~m----~--~~p~~~~~~~ll~~~~ 462 (655)
.+.+ ..+...+..+-+ -..+.......+.++.+-+.-.. |..+...+ + -.-|..-+..++.++.
T Consensus 556 ~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALS 635 (2316)
T PRK09169 556 EPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLS 635 (2316)
T ss_pred chHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHh
Confidence 4332 333333322211 12345677888889998775322 33344333 1 1235677888999999
Q ss_pred hcCCHHHHHHHHHHHhcc---C-----CCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 463 IHENVELAEYACSHLLEL---E-----PENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~---~-----p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
+..+.+........+-.. + --++.-...+++++++-.+.+.+.+....+
T Consensus 636 KWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 636 KWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred cCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 988877655444443321 1 123445566778888777655544444333
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.93 E-value=3e+02 Score=28.13 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----------------------
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---------------------- 445 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---------------------- 445 (655)
.....+...++.+.-..+++.--=. +.++-.+...+.+.|+.+.|.+++++.
T Consensus 15 ~~F~~~v~~~Dp~~l~~ll~~~PyH------idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 15 EQFYAAVQSHDPNALINLLQKNPYH------IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHccCHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ------CCCCChhHHHHHH---HHHHhcCCHHHHHHHHHHHhccCCC-CcchHHHHHHHHH-hcCCchhHHHHHHHHHh
Q 035659 446 ------PIVPGASVWGALL---GACKIHENVELAEYACSHLLELEPE-NHGALVLLSNIYA-KTGKWDNVSELRKHMRV 513 (655)
Q Consensus 446 ------~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 513 (655)
...-|...|.++. ..+.+.|-+..|.++.+-++.++|. |+-.-...++.|+ ++++++--.++.+....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
No 392
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.82 E-value=41 Score=32.64 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 431 RAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+.|+.++|..+|+.. ...|+ +.+...+..-...+++.-+|-+++-+++...|.|.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 445555555555442 22232 22223333333334444455555555555555443
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.40 E-value=28 Score=26.29 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=18.7
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~ 440 (655)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433111111 1234444444444444444443
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.27 E-value=46 Score=30.44 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455555555555555555555555555554444
No 395
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.52 E-value=3.3e+02 Score=27.96 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGK------KDVVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
.+.-+.+-|..||+++.|.+.+.+... ..+..|-.+|..-.-.|+|........+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456788899999999999999988654 12335666677767778887777776666543
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.41 E-value=60 Score=24.56 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=31.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
...+.++|+..|+...+.-..|. -.++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888887776533332 245667778888888888776543
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.89 E-value=1.6e+02 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888888776
No 398
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.80 E-value=2.3e+02 Score=25.90 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=57.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCCh
Q 035659 289 LSACAQLGAMDIGVQIHAKMKKQGIKLN--CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV--WSTMIAGFAMYGCG 364 (655)
Q Consensus 289 l~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~ 364 (655)
...+...+++++|...++......-..+ ..+--.|.......|.+|+|...++....++-.+ ...-...+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3456777888888888877765321111 1222234556667788888888888777665433 22234567778888
Q ss_pred HHHHHHHHHHHHcC
Q 035659 365 REALDLFSRMQEAK 378 (655)
Q Consensus 365 ~~A~~~~~~m~~~g 378 (655)
++|..-|++....+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888877764
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.47 E-value=52 Score=20.54 Aligned_cols=30 Identities=13% Similarity=-0.116 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHhccCCC
Q 035659 454 WGALLGACKIHENVELAEYACS--HLLELEPE 483 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~ 483 (655)
|-.+.-.+-..|++++|+.+++ -+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4455566667777777777733 55555543
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.40 E-value=3.1e+02 Score=27.27 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=77.8
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-
Q 035659 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR- 346 (655)
Q Consensus 269 ~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 346 (655)
|+-+.+++.+..|..-+++|..+ +...+++-.+..+...+. |-.--...+-.....||+.|+.+.|.+.+....++
T Consensus 57 Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 57 YEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33333333356666666666543 122233333333333332 22222345666778899999999999988876543
Q ss_pred -------ChhHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 347 -------DVFVWSTMIA-GFAMYGCGREALDLFSRMQEAKVKPNA----VTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 347 -------~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
|++.+..-+. .|..+.-..+-++..+.+.+.|..-+. .+|-.+- |....++.+|-.+|-....
T Consensus 135 vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 135 VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 4444433332 344455566667777777777765443 3444432 4455678888888776654
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.77 E-value=1.1e+02 Score=25.79 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=32.2
Q ss_pred HHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 469 LAEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 469 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.+..+|+.|...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888887654 55667788888888889999999888864
No 402
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.01 E-value=5.3e+02 Score=29.54 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHhhcCCCCeeHHHH----HHHHHHhCCChhHHHHHHHHHHHCCCCC----CHh---hHHHHHHHHh--cc
Q 035659 187 CGDLAMAYCVFVMIGKKDVVSWNS----MISGFVQGGFFEKAIELYREMEMENVKP----DEV---TMVAVLSACA--KK 253 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~---t~~~ll~~~~--~~ 253 (655)
.+++.--+...+.++.+-...... -+.......++.+|..+..+....-..| ... .++.+ .+-. ..
T Consensus 393 ~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL-~a~val~~ 471 (894)
T COG2909 393 GSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQAL-RAQVALNR 471 (894)
T ss_pred ccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHH-HHHHHHhc
Confidence 345555555555555322221111 1222334567777777776654431121 111 22222 2222 23
Q ss_pred CccccCCChHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhh---HHHH--HH
Q 035659 254 RDLEFGRWPNEALSIFHELQLSK---NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL---TTSL--ID 325 (655)
Q Consensus 254 ~~~~~~~~~~~A~~l~~~m~~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~---~~~l--i~ 325 (655)
|+ +++|+++-+.....- -..+....+..+..+..-.|++++|..+.....+..-.-+... |..+ ..
T Consensus 472 ~~------~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~ 545 (894)
T COG2909 472 GD------PEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSE 545 (894)
T ss_pred CC------HHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 346766666654431 0234455666677777778888888888877766422223222 2222 22
Q ss_pred HHHhcCCH--HHHHHHHhhcCC-----CCh-----hHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCHHHH--HHHH
Q 035659 326 MYTKCGNL--DKALEVFHTVKS-----RDV-----FVWSTMIAGFAMY-GCGREALDLFSRMQEAKVKPNAVTF--TNVL 390 (655)
Q Consensus 326 ~~~~~g~~--~~A~~~~~~~~~-----~~~-----~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll 390 (655)
.+...|+. ++....|..+.. ... -....+..++.+. +...++..-+.--......|-...+ ..++
T Consensus 546 il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 546 ILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 23455632 233333433322 111 2233333333331 1112222222222222122222222 2556
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCCc-chHHHH---HH--HHHhcCCHHHHHHHHHhC
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYTCM---VD--MLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~l---i~--~~~~~g~~~~A~~~~~~m 445 (655)
......|+.++|...++++... ...++. .-|.+. +. .....|+.++|.....+-
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 6677789999999888887654 333321 122222 22 223578888877777663
No 403
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.83 E-value=4.6e+02 Score=28.74 Aligned_cols=277 Identities=14% Similarity=0.034 Sum_probs=152.9
Q ss_pred HHHHHHHHhhcCCC-CeeHHHHHHH----H-HHhCCChhHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHhccCcc
Q 035659 190 LAMAYCVFVMIGKK-DVVSWNSMIS----G-FVQGGFFEKAIELYREMEM-------ENVKPDEVTMVAVLSACAKKRDL 256 (655)
Q Consensus 190 ~~~A~~~f~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~ 256 (655)
...|.+.++...+. +...-..+.. + +....+.+.|+..|+...+ .| ......-+...|.+....
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766553 3333333322 2 4566788999999988876 44 344566677777765432
Q ss_pred ccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH----hcC
Q 035659 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT----KCG 331 (655)
Q Consensus 257 ~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g 331 (655)
..- ..+.|+.++.+.-..| .|+...+...+.-... ..+...|.++|....+.|..+ .+-.+..+|. -..
T Consensus 305 ~~~-d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EKI-DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVER 378 (552)
T ss_pred ccc-cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCC
Confidence 210 1458999999988776 6676665555444333 356789999999999988532 2222333333 234
Q ss_pred CHHHHHHHHhhcCCCCh-hHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hc----cCcHHH
Q 035659 332 NLDKALEVFHTVKSRDV-FVWSTMIAG--FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC---SH----SGLVDE 401 (655)
Q Consensus 332 ~~~~A~~~~~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~----~g~~~~ 401 (655)
+.+.|..++++.-+++. .+...+... +.. ++.+.+.-.+..+.+.|.+--...-..++... .. ..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 78899999998877663 223333222 223 67777777777777765432211111111111 00 124455
Q ss_pred HHHHHHHcchhcCccCCcchHHHHHHHHHhc----CCHHHHHHHHHhCCCCCChhHHHHHHHH----HHhcCCHHHHHHH
Q 035659 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA----GLLDEAVEFIEKMPIVPGASVWGALLGA----CKIHENVELAEYA 473 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~----g~~~~A~~~~~~m~~~p~~~~~~~ll~~----~~~~g~~~~a~~~ 473 (655)
+...+..... +-+......|.+.|... .+.+.|...+.....++ ....-.+... ..... +..|.+.
T Consensus 458 ~~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~ 531 (552)
T KOG1550|consen 458 AFSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRY 531 (552)
T ss_pred HHHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHH
Confidence 5555555433 22333444444444332 24666766666654333 2222222211 12223 6778888
Q ss_pred HHHHhccCC
Q 035659 474 CSHLLELEP 482 (655)
Q Consensus 474 ~~~~~~~~p 482 (655)
++++.+.+.
T Consensus 532 ~~~~~~~~~ 540 (552)
T KOG1550|consen 532 YDQASEEDS 540 (552)
T ss_pred HHHHHhcCc
Confidence 888777654
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.67 E-value=79 Score=21.21 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
.-..+.|-..++..++++|.+.|+..+...|..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3345778888999999999999998888888777653
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.56 E-value=65 Score=25.31 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHHHHHhccCCC----C-----cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 462 KIHENVELAEYACSHLLELEPE----N-----HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+.|++..|.+.+.+..+.... . ..+...++..+...|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776666666553211 1 12344567778888999999988887654
No 406
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.34 E-value=3.3e+02 Score=27.02 Aligned_cols=111 Identities=18% Similarity=0.015 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHcchhcCc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGV---VPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~---~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 474 (655)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888887763111 33455566666677778876665556555544557788889999999999999999999
Q ss_pred HHHhccC-CCCcchHHHHHHHHHhcCCc--hhHHHHHH
Q 035659 475 SHLLELE-PENHGALVLLSNIYAKTGKW--DNVSELRK 509 (655)
Q Consensus 475 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 509 (655)
+.++.-+ -.....+..+... ...+.. +.+.+.++
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL-ASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH-H-CSTTCHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH-hcCChhhHHHHHHHHH
Confidence 9999853 2233344444333 323332 55555544
No 407
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.09 E-value=1.2e+02 Score=25.37 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
|..+-++....-.+.|+.......+.||.+.+++..|.++|+-++.+ ..+.-..|-.+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45555666667778999999999999999999999999999988754 3333335666553 445566666
Q ss_pred CC
Q 035659 446 PI 447 (655)
Q Consensus 446 ~~ 447 (655)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.00 E-value=2e+02 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNA---VTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
+..+-.+.|+..+|.+.|+.+.+. .|=. ..-..|+.+|.....+.....++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444578888888888776653 2211 11234566666655555555544443
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.61 E-value=3.1e+02 Score=28.27 Aligned_cols=51 Identities=4% Similarity=-0.047 Sum_probs=26.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHcch
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAV--TFTNVLCACS--HSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 411 (655)
..+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666666666666665 444333 2233333332 24456666666665543
No 410
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.85 E-value=2.6e+02 Score=29.96 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 178 NSLIHFYAICGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
..|+.-|.+.+++++|..++..|.=. -..+.+.+.+.+.+..--.+....++.+...=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 45788899999999999999888521 1233445555566655455555556655544333333222222222222
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 312 (655)
. + .+-|.++|..+.+.+ .|..........|+.|.-.++|-.+...|
T Consensus 492 ~--V-----~~~aRRfFhhLLR~~-------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 492 P--V-----SDLARRFFHHLLRYQ-------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred H--H-----HHHHHHHHHHHHHhh-------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 1 0 225667777776554 33333333445566666666665555544
No 411
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.56 E-value=2.7e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchh
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.-|.-|.+.|+++.+...|..+...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4455566777777777777766543
No 412
>PRK10941 hypothetical protein; Provisional
Probab=41.44 E-value=1e+02 Score=29.92 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.+.+-.+|.+.++++.|++..+.+ .+.|+ +.-|.--.-.|.+.|.+..|..-++..++.-|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344556778888888888888876 34444 5566667777888889999998888888888877654
No 413
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.07 E-value=4.7e+02 Score=27.86 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMI 355 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 355 (655)
..|.....+++..+...-...-.+.+..+|...| .+...+..++..|... .-++-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455555666666666666666666666666544 3444555666666655 33444555554433 2333333444
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKP--N---AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 430 (655)
.-|-+ ++...+..+|.+...+-++- + ...|.-+... -..+.|.-..+...+....|...-...+.-+-+-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 55666666666655432110 0 0122222211 123455555555555554444444445555556666
Q ss_pred hcCCHHHHHHHHHhC
Q 035659 431 RAGLLDEAVEFIEKM 445 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m 445 (655)
...++++|++++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 667777777777654
No 414
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.27 E-value=2.4e+02 Score=26.79 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHhhcC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCcHHHHHHH
Q 035659 330 CGNLDKALEVFHTVK--SRDV-FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-CACSHSGLVDEGRMF 405 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~ 405 (655)
..+++.|...+-+.. .|.+ .-|+.-+..+.+..+++.+..=-++.++ +.||.+--...+ .+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555444432 2333 3344455555555555555554444444 445544322222 233444555555555
Q ss_pred HHHc
Q 035659 406 FNQM 409 (655)
Q Consensus 406 ~~~~ 409 (655)
+++.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5554
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.23 E-value=53 Score=32.06 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
-||.-|..-.+.|++++|+.+++|.++.|+.--..||
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4789999999999999999999999999976333333
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.48 E-value=93 Score=28.37 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=35.0
Q ss_pred ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555444455678888888888888888888888777776
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.22 E-value=37 Score=28.66 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (655)
-..|.-.+|-.+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999885 66666544
No 418
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.22 E-value=61 Score=30.26 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|-+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567777777777765 3333 45677777777778888888888888888887765
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.21 E-value=1.2e+02 Score=20.29 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=23.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
..+.|-..++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777888877777777777766654
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.19 E-value=4.8e+02 Score=27.07 Aligned_cols=64 Identities=17% Similarity=0.001 Sum_probs=30.1
Q ss_pred cCCCCCCcch--HHHHHHHHHccCCchHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 132 NSPYFPNEFT--FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF--ISNSLIHFYAICGDLAMAYCVFVM 199 (655)
Q Consensus 132 ~~~~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 199 (655)
..|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+.+..+++.
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 3455554322 233444445556554 334444555444322 112334455566666666666654
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.00 E-value=1.7e+02 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
+..|.+.|.+++|.+++++..+ +|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 3457777888888888777777 555443
No 422
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.65 E-value=3e+02 Score=25.85 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFT--NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 424 (655)
-+|.|+--|..+..+.+|.+.|.+ +.|+.| |..++. .-|......|++++|.+..+.+... -+..|...+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555555555555533 333444 223332 3345567778888888877776543 33444322222
Q ss_pred HHH----HHHhcCCHHHHHHHHHh
Q 035659 425 MVD----MLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 425 li~----~~~~~g~~~~A~~~~~~ 444 (655)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221 24577888888888766
No 423
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.41 E-value=2.1e+02 Score=26.22 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH-HHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL-SNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...+.++..|...||++.|-++|.-++...+-|......+ +.++.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4556777888888888888888888887765555444333 3445555555555466666643
No 424
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.36 E-value=4.1e+02 Score=26.04 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
-.++..+...++..++..+++..-.+++...... +...|...|..+|+...+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3455555556666666666666666665555443 344455556666666666665555544443
No 425
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.36 E-value=5e+02 Score=27.10 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=30.0
Q ss_pred eHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 035659 206 VSWNSMISGFVQ---GGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251 (655)
Q Consensus 206 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (655)
..+..+++++.+ ..+.+.|+..+..|.+.|..|....-..+..++-
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345556666655 4788888888888888887766544444444433
No 426
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.28 E-value=5.3e+02 Score=27.33 Aligned_cols=292 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC------HHHHHHHHhhcCCC-
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD------LAMAYCVFVMIGKK- 203 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~f~~~~~~- 203 (655)
+..+..-........-..-...+.++...+++..+...|.....+.+|.-+..|.+.|. .++-..+-.....+
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred ----------CeeHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHhccCccccCCChHHHHHH
Q 035659 204 ----------DVVSWNSMISGFVQGGFFEKAIELYREMEME-----NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268 (655)
Q Consensus 204 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l 268 (655)
+.+.+....-+|.....+.+|+++....... .-..-.+++..+.-+.....--+ ...-+.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~----al~~l~v 164 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEE----ALDYLNV 164 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHHHHCCCCCCCH----------------------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhH
Q 035659 269 FHELQLSKNVNPDE----------------------------FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320 (655)
Q Consensus 269 ~~~m~~~~~~~p~~----------------------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 320 (655)
+.+|...+...|+. ....--+.++....++..+..-.......- ..+....
T Consensus 165 L~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l 243 (696)
T KOG2471|consen 165 LAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMAL 243 (696)
T ss_pred HHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------cCCCC
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSR------------DVFVWSTMIAGFAMYGCGREALDLFSRMQE-------AKVKP 381 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p 381 (655)
-.--..+.-.|++.+|.+++....-. .-+.||.|...+.+.|.+.-+..+|.+..+ .|++|
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Q ss_pred -----------CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH
Q 035659 382 -----------NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430 (655)
Q Consensus 382 -----------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 430 (655)
-..+|+.=+ .+.+.|++-.|.+.|..... -+..++..|--|...|.
T Consensus 324 ~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred CcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.24 E-value=59 Score=23.28 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
|..-.-.+|.||.+.|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567788888888888888777754
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.85 E-value=1.4e+02 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 457 LLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4455677888999998888888753
No 429
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=34.42 E-value=5.5e+02 Score=26.67 Aligned_cols=193 Identities=15% Similarity=0.142 Sum_probs=116.1
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------eeHHHHHHHHHHhCCChhHH-----HHHHH
Q 035659 162 HGMVIKSSFEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKD------VVSWNSMISGFVQGGFFEKA-----IELYR 229 (655)
Q Consensus 162 ~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A-----~~~~~ 229 (655)
+..++.-..+|| ...|+-+.+.=-++.--++.+++.+.|..+. +.-..++|..|++....+-. +.+++
T Consensus 42 W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~ 121 (669)
T KOG3636|consen 42 WMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLE 121 (669)
T ss_pred HHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHH
Confidence 333333333555 4567777776666666778888999987642 12467889999998876532 34555
Q ss_pred HHHHCCCCCCHhhHHHHH---HHHhccCccccCCChHHHHHHHHHHHH-----------CCCCCCCHHHHHHHHHHHhcc
Q 035659 230 EMEMENVKPDEVTMVAVL---SACAKKRDLEFGRWPNEALSIFHELQL-----------SKNVNPDEFTFVSVLSACAQL 295 (655)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~~~~~~~A~~l~~~m~~-----------~~~~~p~~~t~~~ll~~~~~~ 295 (655)
-+....+ |-..+||... .-|.-.+-...| ....+|+-+.+ ...+.||..+.+-+.+.++..
T Consensus 122 pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg----~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~ 196 (669)
T KOG3636|consen 122 PLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKG----QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASS 196 (669)
T ss_pred HHHHhcC-CcchhhhhhHhhhhcccCCCCCCCC----ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHh
Confidence 5544433 4445555432 222222211111 22223333221 223899999999888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHH--------HHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHH
Q 035659 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM--------YTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAM 360 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 360 (655)
-..+-...+++-..+.+ .|-...+-+||-. -.+...-+++.++++.|+. .|+.-+-.|..-|+.
T Consensus 197 ~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 197 MSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred hhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhh
Confidence 88888889998888876 3433333333321 1355677899999999985 366666666666653
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.18 E-value=1.5e+02 Score=22.82 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHH
Q 035659 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224 (655)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 224 (655)
..++..+++.|+ .+....-...+...+.+.|.++++.++.+...+|..+..++...|...-|
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345666666653 22222333334556788888888888888888888888888887765544
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.98 E-value=4.4e+02 Score=25.44 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH-HHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL-LSNIYA 496 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~ 496 (655)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....|. |.+...|.. .+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 56677788888999999999988775542 1222222123332222232 333333332 334467
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788999999988877765
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.30 E-value=1.5e+02 Score=30.63 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKMPIVP----------GASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
..|++..+-.|++..|+++++.+.+.. .+.++..+.-+|...+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888888777763211 23455555566666677777777666654
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.09 E-value=66 Score=23.02 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 207 SWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
-.-.+|.+|.+.|++++|.+..+++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334678888888888888888877754
No 434
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=33.05 E-value=38 Score=24.41 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=22.1
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHH
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~ 283 (655)
|.....++ ++.|+..|.++...+.++|+.+
T Consensus 33 cLe~~~Wd----~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 33 CLEDNNWD----YERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHHcCCC----HHHHHHHHHHHHhcCCCChhhc
Confidence 34445566 7799999999988776777653
No 435
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=33.01 E-value=30 Score=18.33 Aligned_cols=12 Identities=42% Similarity=0.528 Sum_probs=9.0
Q ss_pred cchhHHHHHHhh
Q 035659 616 GDCHTVAKLISK 627 (655)
Q Consensus 616 ~~~~~~~~~is~ 627 (655)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346899998874
No 436
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.93 E-value=4.2e+02 Score=24.92 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 351 WSTMIAGFA--MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 351 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
|...+.||. .++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+.. .-.+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 334444433 345555565555211 12222221 355555556777777776665531 11111222222223
Q ss_pred HHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 035659 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 463 (655)
..+|.+.||..+.+..+-.-....|..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 4556777777666665321112355555555543
No 437
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.59 E-value=2.2e+02 Score=21.87 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 035659 328 TKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 367 (655)
+...+.+.|.++++.++.++..+|.++..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455677777888877777777777777777776654433
No 438
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.58 E-value=8.2e+02 Score=28.12 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=99.9
Q ss_pred hcCCHHHHHHHHhhcC----CCCh-------hHHHHHHHHH-HHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVK----SRDV-------FVWSTMIAGF-AMYGCGREALDLFSRMQEA----KVKPNAVTFTNVLCA 392 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a 392 (655)
-..++++|..+..+.. .++. ..|+++-... ...|+.++|+++-+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4577777777776543 2221 2455554332 3467778888887776653 122334445555566
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHH-----HHHHhcCCHHHH--HHHHHhC-----CCCC----ChhHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV-----DMLGRAGLLDEA--VEFIEKM-----PIVP----GASVWGA 456 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li-----~~~~~~g~~~~A--~~~~~~m-----~~~p----~~~~~~~ 456 (655)
..-.|++++|..+.....+. .-.-+..++...+ ..+...|+...| +..|+.. +-+| -..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 66678888888777766543 2233444433322 234556633332 2222222 1111 1223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccC----CCCcc---hHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 035659 457 LLGACKIHENVELAEYACSHLLELE----PENHG---ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 521 (655)
++.++.+ .+.+..-....++.. |.... .+..|+.++...|+.++|...+.++........+.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 3344333 455544444444432 32221 22367788888899999988888887655444333
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.49 E-value=86 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 390 (655)
-|+..|..-.+.|+.++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 35677777777788888888888888877765555554433
No 440
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.87 E-value=1e+02 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.045 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
....|.-++.+.++++.+.+..+.+++.+|+|..
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3445667788899999999999999999997654
No 441
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.66 E-value=5.2e+02 Score=25.58 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=89.2
Q ss_pred cCCCCChHHHHHHhhcC-C-CCCcchHHHHHHHHHhCC-----CcHHH---H-----HHHHHhhhcCCCCCC--cchHH-
Q 035659 82 LGTFSSLEYAREMFDQI-P-QPNLYTWNTLIRAYSSSA-----EPIQS---F-----MIFLQLVYNSPYFPN--EFTFP- 143 (655)
Q Consensus 82 ~~g~~~~~~A~~~f~~~-~-~~~~~~~~~li~~~~~~g-----~~~~A---~-----~~~~~m~~~~~~~pd--~~t~~- 143 (655)
+.|.-.+..+..+...+ + +++...|..++..+..-. ..+.. + .++..+..+-|..++ .....
T Consensus 50 ~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 129 (324)
T PF11838_consen 50 RAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDR 129 (324)
T ss_dssp HTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHH
T ss_pred HcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHH
Confidence 33433677788888877 3 567777777765433211 11111 1 223333233455544 32222
Q ss_pred ----HHHHHHHccCC---chHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCeeHHHHH
Q 035659 144 ----FVIKAAARLVQ---FRVGQAIHGMVIKSSF----EDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSM 211 (655)
Q Consensus 144 ----~ll~~~~~~~~---~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~l 211 (655)
.++...+ |+ .+.+.+.+......+. ..+......+.....+.|+.+.-..+++.... ++..-...+
T Consensus 130 ~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~ 207 (324)
T PF11838_consen 130 LLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRL 207 (324)
T ss_dssp HHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHH
T ss_pred HHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHH
Confidence 2233333 44 4567777777776422 34566677777788888887776666666654 456667888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHh
Q 035659 212 ISGFVQGGFFEKAIELYREMEMEN-VKPDEVTMVAVLSACA 251 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 251 (655)
+.+++-..+.+...++++.....+ +++. .. ..++.++.
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~-d~-~~~~~~~~ 246 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQ-DI-RYVLAGLA 246 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TT-TH-HHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccH-HH-HHHHHHHh
Confidence 999988888888888888888754 4433 33 33444444
No 442
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=31.52 E-value=4.4e+02 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=17.8
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
..||-|.-.+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 35666666666666666666666666554
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.19 E-value=6.3e+02 Score=26.37 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHC--CCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 264 EALSIFHELQLS--KNV-NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 264 ~A~~l~~~m~~~--~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+...++.+.... .++ ..+......++..+ .|+...+..+++.+...+...+. +...+++
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~ 216 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEAL 216 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHH
Confidence 444555544322 013 44555555554433 67888888777776553211121 1222222
Q ss_pred hhc---CCCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 341 HTV---KSRDVFVWSTMIAGFAM---YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 341 ~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
... ..++......+++++.+ .++.+.|+.++.+|.+.|..|....-..++.++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 211 11222334455555554 47889999999999998888775555444444433
No 444
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.54 E-value=1.6e+02 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 446 PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 446 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.++|. ..++++-++.+.+++|+..|-.+.++++++.|+.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44544 3466777788899999999999999999999854
No 445
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.14 E-value=5.8e+02 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=14.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 035659 355 IAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~ 376 (655)
...+.+.|+.++|..-|++...
T Consensus 372 adlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 372 ADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 4455666777777777776665
No 446
>PRK09169 hypothetical protein; Validated
Probab=29.87 E-value=1.4e+03 Score=29.86 Aligned_cols=397 Identities=10% Similarity=0.002 Sum_probs=212.2
Q ss_pred cchHHHHHHHHHhCCCcHHHHHHHHHhhh----cCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHh-------CCC
Q 035659 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVY----NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-------SFE 171 (655)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~ 171 (655)
...|..+.+.+++.-+.....+.+.+.-. ......|...+..+|+++++-.+...+...-..+-.. -..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 44555666666655554433333322200 0011246777888999998877666555444433111 012
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcC----C-------CCeeHHHHHHHHHHhCCChhHHHHHHHHH---HHC---
Q 035659 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIG----K-------KDVVSWNSMISGFVQGGFFEKAIELYREM---EME--- 234 (655)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~--- 234 (655)
.+..-...++++++|.-+-......-..+- . -+......+++++.|-.+-+.+...-..+ +..
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 344455567778887766555444433321 1 13455677888888876655443332222 111
Q ss_pred -CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHhccCCHHHHH----HHHHH
Q 035659 235 -NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--VNPDEFTFVSVLSACAQLGAMDIGV----QIHAK 307 (655)
Q Consensus 235 -g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~----~~~~~ 307 (655)
...-|..-....++++++-..-+..+. -+..+-.++..... -..|..-....++++++-.+.+.+. .+-..
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~--aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~r 359 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQ--AAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAAR 359 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 123466777888999988765432111 12222222221110 2356677888999999988766543 33333
Q ss_pred HHHcC---CCCchhhHHHHHHHHHhcCCHHHH----HHHHhhcCC-------CChhHHHHHHHHHHHcCChHHHHHH---
Q 035659 308 MKKQG---IKLNCYLTTSLIDMYTKCGNLDKA----LEVFHTVKS-------RDVFVWSTMIAGFAMYGCGREALDL--- 370 (655)
Q Consensus 308 ~~~~g---~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~--- 370 (655)
+.+.. -..++.-....+.+++|.++-+.+ ..+...+.. -|..-....+.++++-+..+.+...
T Consensus 360 L~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~a 439 (2316)
T PRK09169 360 LARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALA 439 (2316)
T ss_pred HHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 32211 134566677788899998875533 333333322 2555566677888877654432222
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHHccCcHHHH----HHHHHHcchhc--CccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 371 FSRMQEA----KVKPNAVTFTNVLCACSHSGLVDEG----RMFFNQMEPVY--GVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 371 ~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a----~~~~~~~~~~~--~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
+-..... .-.-|..-....+.++++-...+.. ..+...+.... .-..+.......+.++++-+..+....
T Consensus 440 LA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~ 519 (2316)
T PRK09169 440 LAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRA 519 (2316)
T ss_pred HHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHH
Confidence 2221111 1234567777888999987765433 23333332210 112456678889999999887665422
Q ss_pred ----HHHhCC------CCCChhHHHHHHHHHHhcCCHHHHHH----HHHHHhcc----CCCCcchHHHHHHHHHhcCCc
Q 035659 441 ----FIEKMP------IVPGASVWGALLGACKIHENVELAEY----ACSHLLEL----EPENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 441 ----~~~~m~------~~p~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~ 501 (655)
+...+. ..-+..-+.+.+.++.+..+.+.... ++..+.+. .--++......++++++-+.-
T Consensus 520 aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~ 598 (2316)
T PRK09169 520 AAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDE 598 (2316)
T ss_pred HHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCc
Confidence 222221 12256677888899998887543332 22222211 122445566677777776654
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.60 E-value=2.5e+02 Score=24.21 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccc
Q 035659 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257 (655)
Q Consensus 193 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 257 (655)
+.+.+++-.-+-...-..++..+.+.+..-.|.++++++.+.+...+..|.-..|+.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 33333333333333445677778888778889999999999888888888777777777777654
No 448
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.25 E-value=6e+02 Score=25.52 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc------cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSH------SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 436 (655)
-.++++.++++....+. |.....-..|.+|-. .-++..-..+|+.+. .+.|++.+--.=.-+.+...-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 35688888888888764 888888877776532 236777777887775 45666544322233344444566
Q ss_pred HHHHHHHhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 437 EAVEFIEKMPIVPGA----SVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 437 ~A~~~~~~m~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.++..++.+.-+|.. ..+..-...+.+.|+.++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 677777766433322 2334445668899999999999999999876543
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.15 E-value=5.3e+02 Score=24.88 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=44.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
-++.....+...|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36778888899999999999998877544433333332233222222222222 222222233 355
Q ss_pred ccCcHHHHHHHHHHcchh
Q 035659 395 HSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~ 412 (655)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877766543
No 450
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.05 E-value=3.5e+02 Score=22.76 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred ChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchH---HHHHHHHHcc-------CCch
Q 035659 87 SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF---PFVIKAAARL-------VQFR 156 (655)
Q Consensus 87 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~---~~ll~~~~~~-------~~~~ 156 (655)
++.-|..++.+....+ -....++.+.+..-.-.++++..++ ....-.|..+.- +.-++.|-.. +...
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L-~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRL-TTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 4455555555544322 2566666666666666777777776 444433433321 1223333321 2223
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201 (655)
Q Consensus 157 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 201 (655)
..-.+...+++.++......+..+-..+.+..++.+|..+|+-+.
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 333456667777766666666667777777778888888877553
No 451
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=28.75 E-value=2.7e+02 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.0
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 444 KMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 444 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
.+.+-|++.+...-+.+|++-+++..|.++++-+...-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 346678888888888999999999999888888765543
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.74 E-value=3.5e+02 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=30.2
Q ss_pred HHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 470 AEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 470 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
...+|..|...+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777776654 5556677788888889999999988875
No 453
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.55 E-value=86 Score=29.31 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
....++.+.+-+++.+++++-|.....|..++....++|+++.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999887743
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.35 E-value=2.8e+02 Score=28.77 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS-----------RDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
....|++.++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888999999998887652 134566667777888888888888887654
No 455
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.16 E-value=2.9e+02 Score=21.52 Aligned_cols=62 Identities=24% Similarity=0.176 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCch-hHHHHHHHH
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPE--NHGALVLLSNIYAKTGKWD-NVSELRKHM 511 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 511 (655)
|......+...+...|+++.|.+.+-.+++.++. +...-..|+.++.-.|.-+ .+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566677777888888888888888888887754 3566677777777777644 444444444
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.15 E-value=3.1e+02 Score=30.09 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=12.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
++..+|..+|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 444555555555555555554443
No 457
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.10 E-value=3.6e+02 Score=22.64 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW-GALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
+-.++..++.=.|..++|.++++..+.-++.... ..++..|+...+.++..++-++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445555666667777777777666544443322 3455666666665555554443
No 458
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.94 E-value=68 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCccc
Q 035659 544 CKEIYSKLDEIVARLKSFGYVPNRSHL 570 (655)
Q Consensus 544 ~~~~~~~~~~l~~~m~~~g~~pd~~~~ 570 (655)
..++...+++-.++++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345677788899999999999996443
No 459
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=2.1e+02 Score=28.54 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=63.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM----PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
=.+-|.+..++..|...|.+- .-.|| .+.|+.-..+-...||+..++.-..++++.+|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 345577888888888888764 11233 566776667777789999999999999999999988888878887777
Q ss_pred CCchhHHHHHH
Q 035659 499 GKWDNVSELRK 509 (655)
Q Consensus 499 g~~~~a~~~~~ 509 (655)
.++++|....+
T Consensus 167 e~~~~a~nw~e 177 (390)
T KOG0551|consen 167 ERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHh
Confidence 77655554433
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.26 E-value=2.5e+02 Score=25.02 Aligned_cols=65 Identities=8% Similarity=-0.104 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccc
Q 035659 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257 (655)
Q Consensus 193 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 257 (655)
+.++++...-+....=..++..+...++.-.|.++++.+.+.+..++..|..-.|..+...|-+.
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33344333333344444566666666677788899999988888888888777777777777654
No 461
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.32 E-value=1.1e+02 Score=29.98 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG 450 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 450 (655)
..+.|+.++|..+|+.... +.|+ +....-+........++-+|-++|-+. .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 4578999999999998873 4555 233333333333345555666666554 44443
No 462
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.97 E-value=5.1e+02 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHhhcCC------CChhHHHHHHH-HHHHcCC--hHHHHHHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKS------RDVFVWSTMIA-GFAMYGC--GREALDLFSRMQE 376 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 376 (655)
..|++++|.+-++++.+ +-...|..+.. +++.++. +-+|.-++.-...
T Consensus 41 H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 41 HRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 34556666555554432 12233444443 4555543 3355555554443
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.89 E-value=6.8e+02 Score=25.04 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (655)
.-+.++++..+.+ +-+.......|..+.+.-+.+...+-++.++... +-+...|...++..
T Consensus 49 ~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 49 RKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 4455666655543 3445555566666666666666666666666643 23455555555543
No 464
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=25.73 E-value=78 Score=25.64 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccCCcccc
Q 035659 545 KEIYSKLDEIVARLKSFGYVPNRSHLL 571 (655)
Q Consensus 545 ~~~~~~~~~l~~~m~~~g~~pd~~~~~ 571 (655)
..++..=..+.++|+..||.||..+.-
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~d 74 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWLD 74 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhcC
Confidence 356666778999999999999987763
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.66 E-value=2e+02 Score=31.97 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHccCcHHHHHHHHHHcchhc-CccC
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT----------FTNVLCACSHSGLVDEGRMFFNQMEPVY-GVVP 417 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p 417 (655)
.+...++-.|....+++..+++.+.++.. ||..- |.-.++-=-+-|+-++|+...-.+.+.. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556666777777888888888877763 43222 2222222234567777777666665442 3455
Q ss_pred Ccch-----HHHH--HHHHHhcCCHHHHHHHHHhC-CCCCC
Q 035659 418 GVKH-----YTCM--VDMLGRAGLLDEAVEFIEKM-PIVPG 450 (655)
Q Consensus 418 ~~~~-----y~~l--i~~~~~~g~~~~A~~~~~~m-~~~p~ 450 (655)
|..- |.-+ -..|..++..+.|.++|++. .++|+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 5321 1111 11223344556666666664 44454
No 466
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=7.1e+02 Score=24.93 Aligned_cols=25 Identities=4% Similarity=-0.124 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
......-|++.|+.+.|.+.+....
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444445666777777666665543
No 467
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.69 E-value=4.4e+02 Score=28.09 Aligned_cols=89 Identities=11% Similarity=0.168 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--------CcchHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE--------NHGALV 489 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 489 (655)
++..|-.++.-|...+++++|.++-.-.+ +...|.+|......+.+..-++.++..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34457777778888899999998877654 6678888888888888888777777777664321 011112
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 035659 490 LLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 490 ~l~~~~~~~g~~~~a~~~~~ 509 (655)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 33444445677777776654
No 468
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.51 E-value=9.6e+02 Score=26.31 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=37.6
Q ss_pred ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCC-cchHHHHHHHHHhCCCcHHHHHHHHHh
Q 035659 69 DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN-LYTWNTLIRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 69 ~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 129 (655)
.+..++.|+....... .++-.++++++.. . ...|..++.++...|-.....-+.+.+
T Consensus 309 ~~~~f~~lv~~lR~~~---~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i 366 (574)
T smart00638 309 AAAKFLRLVRLLRTLS---EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWI 366 (574)
T ss_pred hHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556777777776665 6666666666654 3 567888888888888755444444444
No 469
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.43 E-value=3.2e+02 Score=21.29 Aligned_cols=66 Identities=5% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHH
Q 035659 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227 (655)
Q Consensus 158 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 227 (655)
...++..++..| +.+-...-...+...+.+.+.++++.++.+...+|..+..++-..+...-|.-+
T Consensus 22 ~~~v~~~L~~~g----vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La~lL 87 (90)
T cd08332 22 LDELLIHLLQKD----ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLCDLL 87 (90)
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHHHHH
No 470
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.10 E-value=9.3e+02 Score=26.03 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
+..+.+....+..|+..+......++... .|++..|..+++++...|- ...+.. ...+++
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~-------------~V~~~l--- 241 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIA-------------DVKTML--- 241 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHH-------------HHHHHH---
Confidence 33344444433333766666666555443 4788888888877654331 111111 111111
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 035659 344 KSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384 (655)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 384 (655)
...+......++.+.. .|+.+.++.++++|...|..|...
T Consensus 242 g~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 242 GTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 1222333334444443 477888999999999888776533
No 471
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=7e+02 Score=28.65 Aligned_cols=131 Identities=19% Similarity=0.177 Sum_probs=85.6
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 035659 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
....+|+++.|.+.-..+. |...|..|...-...|+.+-|...|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456899999888766654 455799999999999999999988887765 22333335556887776666
Q ss_pred HHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 406 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
.+.+..+ -|... ....-.-.|+.++=.++++..+..|- .|- ....+|.-++|+++.++.-..
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 5554322 22111 11111236788888888888764432 221 234678889999998888763
No 472
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.86 E-value=1.9e+02 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=7.4
Q ss_pred ccCCHHHHHHHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMK 309 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~ 309 (655)
+.|++.+|.+.++.+.
T Consensus 287 klGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLM 302 (556)
T ss_pred HhhhHHHHHHHHHHHh
Confidence 3444444444444443
No 473
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.75 E-value=6.8e+02 Score=24.31 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
.+.++|...|.++-+.+. ......+. .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 466777777777777665 34444444 444444
No 474
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.29 E-value=3.1e+02 Score=29.62 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHcc--CcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH-hcCCHHHHHHHHHhC----CCCCChh
Q 035659 380 KPNAVTFTNVLCACSHS--GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG-RAGLLDEAVEFIEKM----PIVPGAS 452 (655)
Q Consensus 380 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~-~~g~~~~A~~~~~~m----~~~p~~~ 452 (655)
.|+..+...++.-.... ..-+-|-.++..|.. .+.|--...| +...|- -.|+...|.+.+... |.+.+ +
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQD-V 643 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhc-c
Confidence 46666666665544332 223445556666643 3444322222 223343 368888888887765 33323 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..-.|.....+.|-...|-.++.+.+.+....+-++..++++|....+.+.|.+.++...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 344566666677788889999999998887777899999999999999999999998776643
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.26 E-value=7.3e+02 Score=25.58 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCccccCCChHHHHHHHHHHHHC
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPDEV--TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS 275 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~ 275 (655)
+...+++..|.++|+++... ++++.. .+..+..+|..=..++ ..+|.+.|+.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd----~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFD----HKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHH
Confidence 34678889999999988876 555544 4555566666555555 66888888877643
No 476
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.16 E-value=3.6e+02 Score=20.91 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
++|+.....|+..|+.+|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777778888888888888877766666666666666654
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.00 E-value=4.1e+02 Score=22.91 Aligned_cols=21 Identities=0% Similarity=-0.078 Sum_probs=9.1
Q ss_pred HHHHccCcHHHHHHHHHHcch
Q 035659 391 CACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~ 411 (655)
..+...+..-.|.++++.+.+
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 28 ELLLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHH
Confidence 333333333444444444443
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.58 E-value=3.1e+02 Score=24.41 Aligned_cols=37 Identities=5% Similarity=-0.094 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
.+.-.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344555555555555544443333333444444444
No 479
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=22.49 E-value=31 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.1
Q ss_pred ceEEEecCCcccccCCccccCC
Q 035659 631 REILLRDRYRFHHFRGGNCSCM 652 (655)
Q Consensus 631 ~~~~~~d~~~~h~f~~g~csc~ 652 (655)
..|=+.|.+..|+|++|+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 3677899999999999986643
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.44 E-value=4.6e+02 Score=21.91 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
.+.++|+.|..+ ++--. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544 44333 3344444555555555555555554
No 481
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=22.44 E-value=58 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=26.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
....|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456777899999999999999985 55666554
No 482
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.37 E-value=3.8e+02 Score=20.82 Aligned_cols=42 Identities=2% Similarity=-0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201 (655)
Q Consensus 160 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 201 (655)
++|+.....|+..|..+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777776665555555566655553
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.17 E-value=8.7e+02 Score=24.99 Aligned_cols=24 Identities=4% Similarity=-0.342 Sum_probs=12.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
+.+.+++..|.++|+++....+.|
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~ 163 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSA 163 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccCh
Confidence 344455555555555555544333
No 484
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=2.4e+02 Score=27.26 Aligned_cols=58 Identities=26% Similarity=0.166 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+=.++.+.++++.|..+.++.+.++|.++.-..--+-+|.+.|...-|.+-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3356778888899999999999998888877777788888888888888877765553
No 485
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.60 E-value=9.7e+02 Score=25.32 Aligned_cols=226 Identities=10% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCChhHHHH--HHHH-----HHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHH
Q 035659 159 QAIHGMVIKSSFEDDLFISNS--LIHF-----YAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELY 228 (655)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~--li~~-----~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 228 (655)
.++.+.+++.|..++...... .+.. .+..|..+-+.-+++.-.. +|...++.|..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHHCCCCCCHhhHH--HHHHHHhccC--ccccCCChHHHHHHHHHHHHCCCCCCCHHHH--HHHHHHHhccCCHHHHH
Q 035659 229 REMEMENVKPDEVTMV--AVLSACAKKR--DLEFGRWPNEALSIFHELQLSKNVNPDEFTF--VSVLSACAQLGAMDIGV 302 (655)
Q Consensus 229 ~~m~~~g~~p~~~t~~--~ll~~~~~~~--~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~ 302 (655)
+.+.+.|..++..... +.+..++..+ +.+ +++.+.+.| ..++...- .+.+...+..| -.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----------iv~~Ll~~g-~din~~d~~g~tpL~~A~~~~----~~ 189 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----------ILKLLIDKG-VDINAKNRYGYTPLHIAVEKG----NI 189 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----------HHHHHHHCC-CCcccccCCCCCHHHHHHHhC----CH
Q ss_pred HHHHHHHHcCCCCchhhH--------HHHHHHHHhcCC--HHHHHHHHhh---cCCCChhHHHHHHHHHHHcCChHHHHH
Q 035659 303 QIHAKMKKQGIKLNCYLT--------TSLIDMYTKCGN--LDKALEVFHT---VKSRDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
++.+.+.+.|..++.... ...+...+..|+ .+-+.-+++. +..+|..-++.+..+..... .+
T Consensus 190 ~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~ 264 (480)
T PHA03100 190 DVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PE 264 (480)
T ss_pred HHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HH
Q ss_pred HHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHH
Q 035659 370 LFSRMQEAKVKPNAVTFT--NVLCACSHSGLVDEGRMFFN 407 (655)
Q Consensus 370 ~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~ 407 (655)
+++.+.+.|..|+..... +-+......+..+-...+++
T Consensus 265 iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 265 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.34 E-value=2.4e+02 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=6.8
Q ss_pred HHccCcHHHHHHHHHHc
Q 035659 393 CSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~ 409 (655)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33334444444444333
No 487
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.10 E-value=1.2e+02 Score=33.43 Aligned_cols=139 Identities=13% Similarity=0.080 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 183 (655)
..|..-+.-+...++.. ....+..+.+-. ..+.....-++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+..
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p-~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVP-LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 34655555554433222 333333322222 22444556667777777777777777665433321 12245555666
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCeeHHH-------------HHHHHH---------HhCCChhHHHHHHHHHHHCCCC
Q 035659 184 YAICGDLAMAYCVFVMIGK----KDVVSWN-------------SMISGF---------VQGGFFEKAIELYREMEMENVK 237 (655)
Q Consensus 184 ~~~~g~~~~A~~~f~~~~~----~~~~~~~-------------~li~~~---------~~~g~~~~A~~~~~~m~~~g~~ 237 (655)
+.++|+......+-+.+.+ ++...+. .-+..| .+.|++.+|.+.+-.+...+..
T Consensus 448 ~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~ 527 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIA 527 (566)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCC
Confidence 6677776665555444431 1000000 111111 2347777887777777777777
Q ss_pred CCHhhHHHHH
Q 035659 238 PDEVTMVAVL 247 (655)
Q Consensus 238 p~~~t~~~ll 247 (655)
|...-...|.
T Consensus 528 Pk~f~~~LL~ 537 (566)
T PF07575_consen 528 PKSFWPLLLC 537 (566)
T ss_dssp ----------
T ss_pred cHHHHHHHHH
Confidence 7665544444
No 488
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.93 E-value=2e+02 Score=28.35 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=42.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGA-LLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..+|.+.+.++|.++..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4444444444333444455555555443 2222 4445532 2223567788888888888888888888876653
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=3.1e+02 Score=26.73 Aligned_cols=141 Identities=10% Similarity=0.049 Sum_probs=73.0
Q ss_pred HHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 368 LDLFSRMQEAK--------VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 368 ~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
..+|+-+-+.| ++.|..-+++++.- +..++++--+-.+...+..|-.-..+.+..+.+-|++.++.+.+.
T Consensus 58 aplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~ 135 (412)
T COG5187 58 APLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGF 135 (412)
T ss_pred hHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34566666655 44455556665532 111222222223333332233333566777888999999999999
Q ss_pred HHHHhC-------CCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHHhcCCchhHHH
Q 035659 440 EFIEKM-------PIVPGASVWGA-LLGACKIHENVELAEYACSHLLELEPE-----NHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 440 ~~~~~m-------~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
++..+. +.+-|+..... |.-.|....-+++.+++.+.+++.+-+ ...+|..+- +....++.+|..
T Consensus 136 ~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~ 213 (412)
T COG5187 136 EWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAI 213 (412)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHH
Confidence 887663 44445432222 222344444456777777777776531 122333222 223345667666
Q ss_pred HHHHHH
Q 035659 507 LRKHMR 512 (655)
Q Consensus 507 ~~~~m~ 512 (655)
++....
T Consensus 214 Ll~d~l 219 (412)
T COG5187 214 LLSDIL 219 (412)
T ss_pred HHHHHh
Confidence 665443
No 490
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=8.4e+02 Score=24.15 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHH
Q 035659 451 ASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~ 471 (655)
.-.|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346778888888888877654
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.26 E-value=2.3e+02 Score=23.10 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccc
Q 035659 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257 (655)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 257 (655)
.++..+...+..-.|.++++++.+.+..++..|....|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666666777889999999999888888888888888888888754
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.24 E-value=1.9e+02 Score=20.98 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred hhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 198 VMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 198 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
+++..+....++.++..+++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 1 D~~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 1 DEIVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp GGTEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Done!