Query 035659
Match_columns 655
No_of_seqs 796 out of 4785
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-38 4.4E-43 351.1 39.2 428 68-514 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-37 9.5E-42 340.4 36.6 445 36-496 82-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.5E-28 2.6E-32 255.1 21.8 190 206-396 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-25 1E-29 230.5 39.8 373 110-500 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.9E-27 6.5E-32 252.0 22.4 203 222-432 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2E-24 6.7E-29 224.2 39.6 351 146-514 6-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.3E-22 1.5E-26 210.8 29.0 308 171-494 23-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4E-26 211.0 32.6 394 106-514 9-478 (514)
9 2gw1_A Mitochondrial precursor 99.9 3.4E-21 1.2E-25 207.4 29.4 404 72-491 8-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 7.3E-20 2.5E-24 198.3 36.3 394 104-515 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 196.1 32.2 362 102-503 25-443 (450)
12 3fp2_A TPR repeat-containing p 99.8 3E-18 1E-22 185.5 34.1 396 72-489 27-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.8E-22 169.8 31.5 318 141-497 5-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 4.2E-17 1.4E-21 166.2 34.6 293 208-514 6-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.7E-22 168.3 24.7 342 82-506 15-364 (449)
16 3hym_B Cell division cycle pro 99.8 1.8E-16 6.1E-21 159.7 30.4 234 264-501 74-321 (330)
17 3hym_B Cell division cycle pro 99.8 1.3E-16 4.4E-21 160.8 26.9 265 237-513 19-298 (330)
18 1fch_A Peroxisomal targeting s 99.8 3.2E-17 1.1E-21 168.2 22.3 298 184-510 35-355 (368)
19 2xm6_A Protein corresponding t 99.8 4.8E-15 1.6E-19 158.5 38.8 367 101-497 37-452 (490)
20 1b89_A Protein (clathrin heavy 99.7 4.2E-18 1.4E-22 172.0 11.7 281 186-507 15-304 (449)
21 2xm6_A Protein corresponding t 99.7 1.9E-14 6.6E-19 153.7 40.3 363 122-516 26-434 (490)
22 2ooe_A Cleavage stimulation fa 99.7 1.6E-14 5.4E-19 156.1 38.5 407 68-514 11-492 (530)
23 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.7E-21 161.1 22.7 317 87-444 16-355 (368)
24 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.9E-19 157.2 34.9 419 37-483 12-495 (530)
25 1xi4_A Clathrin heavy chain; a 99.7 3.6E-14 1.2E-18 159.2 39.1 375 73-507 988-1377(1630)
26 4g1t_A Interferon-induced prot 99.7 9.9E-15 3.4E-19 155.1 32.2 326 175-524 95-469 (472)
27 3mkr_A Coatomer subunit epsilo 99.7 3.3E-15 1.1E-19 147.5 24.9 270 215-507 9-287 (291)
28 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4E-22 181.6 7.2 150 171-331 124-286 (1134)
29 4eqf_A PEX5-related protein; a 99.7 7.7E-16 2.6E-20 157.8 20.6 271 138-444 64-352 (365)
30 4eqf_A PEX5-related protein; a 99.7 9.8E-16 3.4E-20 157.0 20.6 261 239-510 64-352 (365)
31 3cv0_A Peroxisome targeting si 99.7 2.8E-15 9.5E-20 150.7 20.1 261 239-511 20-312 (327)
32 1xi4_A Clathrin heavy chain; a 99.7 7.2E-13 2.5E-17 148.8 40.6 405 37-499 984-1415(1630)
33 3spa_A Mtrpol, DNA-directed RN 99.7 9.1E-17 3.1E-21 174.6 9.1 151 205-362 127-286 (1134)
34 4g1t_A Interferon-induced prot 99.6 1.5E-13 5.3E-18 145.9 31.7 372 103-492 51-471 (472)
35 3cv0_A Peroxisome targeting si 99.6 4.2E-14 1.4E-18 142.0 25.0 269 140-445 22-312 (327)
36 3mkr_A Coatomer subunit epsilo 99.6 1.6E-14 5.4E-19 142.6 20.9 243 250-514 9-264 (291)
37 3uq3_A Heat shock protein STI1 99.6 8.1E-14 2.8E-18 134.6 21.5 220 282-514 5-236 (258)
38 2pl2_A Hypothetical conserved 99.6 1.8E-13 6.2E-18 128.8 18.7 194 314-511 2-211 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.7E-13 2E-17 130.1 22.0 238 262-508 21-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 8E-13 2.7E-17 127.6 18.1 236 240-493 5-255 (258)
41 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.9E-17 138.0 20.1 372 112-513 12-420 (452)
42 3u4t_A TPR repeat-containing p 99.5 1.5E-12 5.2E-17 126.9 19.8 245 241-498 4-268 (272)
43 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-11 4.7E-16 129.7 28.4 347 145-516 9-389 (452)
44 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.1E-16 119.6 26.2 224 281-516 5-253 (273)
45 2ho1_A Type 4 fimbrial biogene 99.5 7.4E-12 2.5E-16 120.5 23.1 201 283-486 38-244 (252)
46 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-12 5E-17 124.6 16.0 208 281-492 22-234 (243)
47 2ho1_A Type 4 fimbrial biogene 99.4 8E-12 2.7E-16 120.3 21.2 197 317-515 37-239 (252)
48 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.6E-16 116.8 21.4 194 318-513 9-210 (225)
49 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.3E-16 115.1 22.9 208 281-491 7-222 (225)
50 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.4E-12 4.9E-17 127.2 15.2 239 116-406 18-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.4 2.7E-12 9.4E-17 122.6 16.5 197 315-514 21-222 (243)
52 2pl2_A Hypothetical conserved 99.4 6.2E-12 2.1E-16 118.2 17.8 192 238-443 3-209 (217)
53 3u4t_A TPR repeat-containing p 99.4 1.7E-11 5.7E-16 119.5 21.5 226 284-514 5-250 (272)
54 2h6f_A Protein farnesyltransfe 99.4 1.1E-11 3.8E-16 126.5 19.9 244 241-497 98-365 (382)
55 3sf4_A G-protein-signaling mod 99.4 4.1E-12 1.4E-16 131.6 16.7 222 282-503 87-365 (406)
56 3sf4_A G-protein-signaling mod 99.4 8.8E-12 3E-16 129.1 19.1 269 237-513 6-335 (406)
57 1ouv_A Conserved hypothetical 99.4 6.2E-11 2.1E-15 115.7 24.1 226 239-484 5-255 (273)
58 4a1s_A PINS, partner of inscut 99.4 4.3E-12 1.5E-16 132.0 16.4 265 242-514 50-372 (411)
59 2h6f_A Protein farnesyltransfe 99.4 8E-12 2.7E-16 127.6 17.3 226 282-513 97-347 (382)
60 4abn_A Tetratricopeptide repea 99.4 3E-12 1E-16 135.6 14.4 208 298-511 84-318 (474)
61 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.7E-16 123.7 17.7 265 242-514 7-332 (338)
62 3vtx_A MAMA; tetratricopeptide 99.4 5.4E-11 1.8E-15 108.4 19.4 165 347-514 4-170 (184)
63 4a1s_A PINS, partner of inscut 99.3 2.1E-11 7.2E-16 126.7 18.0 201 282-482 126-374 (411)
64 4e6h_A MRNA 3'-END-processing 99.3 2.2E-09 7.7E-14 116.9 33.9 421 57-485 54-575 (679)
65 3ro2_A PINS homolog, G-protein 99.3 4.5E-11 1.5E-15 119.9 17.9 264 212-483 12-335 (338)
66 3ulq_A Response regulator aspa 99.3 1.1E-10 3.8E-15 120.1 19.9 225 288-513 109-367 (383)
67 2ond_A Cleavage stimulation fa 99.3 4.9E-10 1.7E-14 111.5 23.5 219 263-486 33-276 (308)
68 3nf1_A KLC 1, kinesin light ch 99.3 8E-12 2.7E-16 124.2 9.0 233 281-513 26-306 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.3 8.5E-11 2.9E-15 129.6 17.6 162 347-513 8-173 (723)
70 3vtx_A MAMA; tetratricopeptide 99.2 1.9E-10 6.5E-15 104.7 16.9 166 316-484 4-174 (184)
71 2ond_A Cleavage stimulation fa 99.2 6.2E-10 2.1E-14 110.7 20.6 211 299-515 33-271 (308)
72 3ulq_A Response regulator aspa 99.2 3.9E-10 1.3E-14 116.0 19.1 230 246-481 109-369 (383)
73 4e6h_A MRNA 3'-END-processing 99.2 1.1E-08 3.8E-13 111.4 31.0 411 101-515 64-571 (679)
74 3nf1_A KLC 1, kinesin light ch 99.2 6.8E-11 2.3E-15 117.4 12.4 248 205-483 27-310 (311)
75 3as5_A MAMA; tetratricopeptide 99.2 4.6E-10 1.6E-14 101.8 16.9 157 354-513 14-172 (186)
76 3q15_A PSP28, response regulat 99.1 2E-09 6.9E-14 110.5 20.7 226 247-478 108-363 (378)
77 3edt_B KLC 2, kinesin light ch 99.1 5.6E-10 1.9E-14 108.9 15.6 147 264-411 26-197 (283)
78 3as5_A MAMA; tetratricopeptide 99.1 2.4E-09 8.1E-14 96.9 18.2 168 317-487 8-180 (186)
79 4i17_A Hypothetical protein; T 99.1 1.4E-09 4.9E-14 102.7 17.3 205 279-495 4-224 (228)
80 1hz4_A MALT regulatory protein 99.1 1.4E-08 4.9E-13 103.7 26.1 262 214-482 23-324 (373)
81 1hz4_A MALT regulatory protein 99.1 2.4E-08 8E-13 102.1 27.7 261 246-513 20-321 (373)
82 4abn_A Tetratricopeptide repea 99.1 1.8E-09 6.3E-14 114.2 19.2 212 119-343 84-318 (474)
83 4i17_A Hypothetical protein; T 99.1 2.2E-09 7.6E-14 101.4 16.2 187 316-514 6-209 (228)
84 3q15_A PSP28, response regulat 99.1 6.8E-09 2.3E-13 106.5 20.2 225 288-513 107-364 (378)
85 1qqe_A Vesicular transport pro 99.0 5.1E-09 1.7E-13 103.2 17.2 226 264-511 3-266 (292)
86 1qqe_A Vesicular transport pro 99.0 1.3E-08 4.4E-13 100.2 16.9 210 263-488 34-277 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.0 3.4E-09 1.2E-13 116.9 13.6 159 317-480 9-174 (723)
88 3qky_A Outer membrane assembly 99.0 3.3E-08 1.1E-12 95.4 18.8 205 315-560 13-247 (261)
89 3edt_B KLC 2, kinesin light ch 98.9 3E-08 1E-12 96.4 17.9 96 281-376 84-197 (283)
90 3mv2_B Coatomer subunit epsilo 98.9 2.2E-07 7.4E-12 90.0 21.1 179 301-487 85-289 (310)
91 3qky_A Outer membrane assembly 98.9 3.6E-08 1.2E-12 95.1 15.9 203 279-503 12-250 (261)
92 2fo7_A Synthetic consensus TPR 98.9 3.6E-08 1.2E-12 83.6 13.6 129 350-513 3-131 (136)
93 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 6.7E-12 87.7 19.6 180 317-516 4-215 (225)
94 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.9E-12 93.1 18.1 175 333-512 102-282 (287)
95 2fo7_A Synthetic consensus TPR 98.8 8E-08 2.7E-12 81.4 14.9 123 319-444 3-128 (136)
96 2pzi_A Probable serine/threoni 98.8 2.6E-08 9.1E-13 110.2 12.3 168 328-500 402-583 (681)
97 4ga2_A E3 SUMO-protein ligase 98.8 5.3E-09 1.8E-13 91.6 5.4 135 361-500 10-149 (150)
98 3mv2_B Coatomer subunit epsilo 98.7 2.4E-07 8.1E-12 89.8 16.4 174 336-514 85-282 (310)
99 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 84.8 14.1 157 353-513 11-172 (176)
100 4ga2_A E3 SUMO-protein ligase 98.7 3.1E-08 1E-12 86.6 8.4 120 391-513 5-128 (150)
101 3rjv_A Putative SEL1 repeat pr 98.7 4.9E-07 1.7E-11 84.1 17.0 161 347-516 17-199 (212)
102 2ifu_A Gamma-SNAP; membrane fu 98.7 4.5E-07 1.6E-11 89.8 17.3 194 295-506 29-253 (307)
103 2pzi_A Probable serine/threoni 98.7 3.6E-07 1.2E-11 101.1 17.3 188 293-487 402-609 (681)
104 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.8E-12 101.1 14.9 159 330-492 2-169 (568)
105 2uy1_A Cleavage stimulation fa 98.6 3.1E-05 1.1E-09 81.7 30.2 360 87-478 29-411 (493)
106 3dra_A Protein farnesyltransfe 98.6 1.8E-05 6.1E-10 77.3 26.0 220 263-489 50-297 (306)
107 2vsy_A XCC0866; transferase, g 98.6 4.8E-07 1.6E-11 98.2 16.1 146 295-445 2-154 (568)
108 3dra_A Protein farnesyltransfe 98.6 4.9E-06 1.7E-10 81.3 21.4 214 296-513 47-286 (306)
109 3gyz_A Chaperone protein IPGC; 98.6 2.2E-07 7.6E-12 80.9 10.5 102 414-515 30-134 (151)
110 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-06 4.3E-11 85.9 17.0 164 350-513 77-265 (293)
111 3qou_A Protein YBBN; thioredox 98.6 1.8E-06 6E-11 84.5 17.9 165 278-444 113-280 (287)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.6 9.7E-07 3.3E-11 81.9 15.3 125 386-515 9-151 (213)
113 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.1E-06 3.6E-11 82.6 15.6 184 282-486 4-219 (225)
114 3urz_A Uncharacterized protein 98.6 6.4E-07 2.2E-11 83.0 13.7 176 287-484 9-190 (208)
115 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.6E-12 80.8 9.7 96 419-514 21-118 (148)
116 3u3w_A Transcriptional activat 98.6 4.2E-06 1.4E-10 82.1 20.1 160 354-513 81-265 (293)
117 4gco_A Protein STI-1; structur 98.6 3.4E-07 1.2E-11 77.1 10.2 94 420-513 14-109 (126)
118 3urz_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 78.3 17.6 169 262-457 20-196 (208)
119 2r5s_A Uncharacterized protein 98.5 8E-07 2.7E-11 79.9 13.0 155 320-479 9-172 (176)
120 3rjv_A Putative SEL1 repeat pr 98.5 2.4E-06 8.3E-11 79.3 16.4 159 317-482 18-199 (212)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.8E-06 9.6E-11 78.7 16.1 145 320-484 9-154 (213)
122 4gco_A Protein STI-1; structur 98.5 1E-06 3.4E-11 74.2 11.6 108 384-494 14-124 (126)
123 2c2l_A CHIP, carboxy terminus 98.5 4.6E-07 1.6E-11 88.4 10.8 190 318-514 5-199 (281)
124 1a17_A Serine/threonine protei 98.5 1.5E-06 5.2E-11 76.7 12.8 127 385-513 15-145 (166)
125 1na0_A Designed protein CTPR3; 98.5 1.5E-06 5.2E-11 72.2 12.1 115 383-499 9-125 (125)
126 2xcb_A PCRH, regulatory protei 98.5 1.6E-06 5.6E-11 74.6 12.5 96 419-514 18-115 (142)
127 2vyi_A SGTA protein; chaperone 98.4 1.9E-06 6.4E-11 72.4 12.2 118 383-502 12-131 (131)
128 2uy1_A Cleavage stimulation fa 98.4 3.9E-05 1.3E-09 80.9 24.9 368 88-513 11-412 (493)
129 2ifu_A Gamma-SNAP; membrane fu 98.4 7.1E-07 2.4E-11 88.4 10.6 197 294-512 3-222 (307)
130 3u3w_A Transcriptional activat 98.4 3.5E-05 1.2E-09 75.4 22.2 196 276-480 40-266 (293)
131 4f3v_A ESX-1 secretion system 98.4 1.5E-06 5.3E-11 82.9 11.8 192 294-491 18-247 (282)
132 1p5q_A FKBP52, FK506-binding p 98.4 1.1E-06 3.7E-11 88.2 11.4 93 420-512 197-292 (336)
133 2lni_A Stress-induced-phosphop 98.4 2E-06 6.7E-11 72.6 11.2 115 383-500 16-133 (133)
134 4f3v_A ESX-1 secretion system 98.3 6.3E-06 2.1E-10 78.7 13.9 182 329-515 18-238 (282)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 1E-05 3.5E-10 79.3 16.1 163 318-480 76-266 (293)
136 3upv_A Heat shock protein STI1 98.3 3.9E-06 1.3E-10 70.3 10.9 95 420-514 5-101 (126)
137 1hxi_A PEX5, peroxisome target 98.3 2.5E-06 8.7E-11 71.1 9.0 95 420-514 18-114 (121)
138 2kck_A TPR repeat; tetratricop 98.3 4.6E-06 1.6E-10 67.7 10.5 97 419-515 6-107 (112)
139 3gw4_A Uncharacterized protein 98.3 5E-06 1.7E-10 76.1 11.9 150 330-479 5-175 (203)
140 3gw4_A Uncharacterized protein 98.3 1.8E-05 6E-10 72.4 15.4 152 293-445 3-173 (203)
141 2e2e_A Formate-dependent nitri 98.3 1.7E-06 5.7E-11 77.7 7.9 118 395-514 22-144 (177)
142 3q49_B STIP1 homology and U bo 98.2 7.3E-06 2.5E-10 69.7 11.3 97 418-514 8-106 (137)
143 3sz7_A HSC70 cochaperone (SGT) 98.2 5.4E-06 1.8E-10 73.3 10.3 93 421-513 13-107 (164)
144 3q7a_A Farnesyltransferase alp 98.2 0.00046 1.6E-08 68.1 24.7 164 264-434 72-257 (349)
145 1na0_A Designed protein CTPR3; 98.2 9.2E-06 3.2E-10 67.3 10.9 96 419-514 9-106 (125)
146 2fbn_A 70 kDa peptidylprolyl i 98.2 8.1E-06 2.8E-10 74.7 11.4 170 324-514 11-186 (198)
147 1elw_A TPR1-domain of HOP; HOP 98.2 1.5E-05 5E-10 65.3 12.0 108 385-494 6-115 (118)
148 1elw_A TPR1-domain of HOP; HOP 98.2 9.8E-06 3.4E-10 66.4 10.5 96 419-514 4-101 (118)
149 3gyz_A Chaperone protein IPGC; 98.2 1.4E-05 4.8E-10 69.4 11.6 104 379-485 31-138 (151)
150 3q7a_A Farnesyltransferase alp 98.2 9.1E-05 3.1E-09 73.1 18.7 215 295-513 67-330 (349)
151 4gcn_A Protein STI-1; structur 98.2 5.5E-06 1.9E-10 69.7 8.7 94 420-513 9-111 (127)
152 2e2e_A Formate-dependent nitri 98.2 1.1E-05 3.6E-10 72.3 11.1 127 359-488 21-152 (177)
153 2lni_A Stress-induced-phosphop 98.2 9.9E-06 3.4E-10 68.2 10.3 97 418-514 15-113 (133)
154 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.1E-10 67.6 12.6 111 382-495 27-143 (148)
155 3dss_A Geranylgeranyl transfer 98.2 0.0003 1E-08 69.1 21.9 223 263-494 47-318 (331)
156 2dba_A Smooth muscle cell asso 98.2 1.5E-05 5.2E-10 68.5 11.5 97 418-514 27-128 (148)
157 2vgx_A Chaperone SYCD; alterna 98.1 4.7E-06 1.6E-10 72.3 7.9 103 383-488 21-126 (148)
158 3sz7_A HSC70 cochaperone (SGT) 98.1 2.1E-05 7.1E-10 69.4 11.8 107 383-492 11-120 (164)
159 1a17_A Serine/threonine protei 98.1 3.1E-05 1.1E-09 68.0 12.9 128 349-479 14-145 (166)
160 2c2l_A CHIP, carboxy terminus 98.1 1.5E-05 5E-10 77.6 11.5 96 206-310 5-100 (281)
161 3upv_A Heat shock protein STI1 98.1 2E-05 6.8E-10 65.9 10.8 108 385-495 6-122 (126)
162 2xcb_A PCRH, regulatory protei 98.1 1.3E-05 4.5E-10 68.8 9.8 105 384-491 19-126 (142)
163 2hr2_A Hypothetical protein; a 98.1 1E-05 3.5E-10 69.8 8.6 62 452-513 58-130 (159)
164 2vyi_A SGTA protein; chaperone 98.1 1.9E-05 6.4E-10 66.0 10.3 97 418-514 11-109 (131)
165 2xev_A YBGF; tetratricopeptide 98.1 1.7E-05 5.7E-10 66.6 9.9 92 423-514 6-105 (129)
166 1wao_1 Serine/threonine protei 98.1 1.9E-05 6.5E-10 83.1 12.5 116 392-510 15-135 (477)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.9E-05 9.9E-10 81.3 12.8 145 348-514 268-415 (457)
168 3k9i_A BH0479 protein; putativ 98.0 5.4E-06 1.8E-10 68.5 5.1 82 432-513 3-89 (117)
169 3q49_B STIP1 homology and U bo 98.0 3.1E-05 1.1E-09 65.7 9.8 100 382-483 8-109 (137)
170 3rkv_A Putative peptidylprolyl 98.0 4.4E-05 1.5E-09 67.1 11.0 64 451-514 63-126 (162)
171 2kck_A TPR repeat; tetratricop 98.0 3E-05 1E-09 62.7 9.1 100 384-485 7-111 (112)
172 1elr_A TPR2A-domain of HOP; HO 98.0 2.4E-05 8.1E-10 65.4 8.5 95 420-514 5-108 (131)
173 4b4t_Q 26S proteasome regulato 98.0 6.7E-05 2.3E-09 77.8 13.8 162 351-512 58-243 (434)
174 1wao_1 Serine/threonine protei 97.9 4.3E-05 1.5E-09 80.4 12.1 116 324-443 13-134 (477)
175 1elr_A TPR2A-domain of HOP; HO 97.9 6E-05 2.1E-09 62.9 11.0 106 388-496 9-123 (131)
176 3dss_A Geranylgeranyl transfer 97.9 0.0012 4.3E-08 64.7 21.5 216 294-513 41-303 (331)
177 3ro3_A PINS homolog, G-protein 97.9 5E-05 1.7E-09 66.1 10.6 93 421-513 51-157 (164)
178 2xev_A YBGF; tetratricopeptide 97.9 0.00012 4E-09 61.2 12.1 100 389-491 8-116 (129)
179 2fbn_A 70 kDa peptidylprolyl i 97.9 1E-05 3.6E-10 74.0 5.8 96 419-514 38-151 (198)
180 4gcn_A Protein STI-1; structur 97.9 0.00015 5.1E-09 60.7 12.1 92 284-376 10-111 (127)
181 3n71_A Histone lysine methyltr 97.9 9E-05 3.1E-09 77.6 12.4 124 392-515 318-465 (490)
182 1ihg_A Cyclophilin 40; ppiase 97.8 6.7E-05 2.3E-09 76.0 11.1 137 348-506 223-362 (370)
183 1p5q_A FKBP52, FK506-binding p 97.8 0.00018 6.2E-09 71.8 14.0 90 284-374 198-291 (336)
184 3ro3_A PINS homolog, G-protein 97.8 6E-05 2.1E-09 65.5 9.4 97 385-481 51-159 (164)
185 1hxi_A PEX5, peroxisome target 97.8 4.9E-05 1.7E-09 63.2 8.1 97 386-485 20-119 (121)
186 2hr2_A Hypothetical protein; a 97.8 3E-05 1E-09 66.8 6.6 69 421-489 59-140 (159)
187 4b4t_Q 26S proteasome regulato 97.8 0.00041 1.4E-08 71.8 16.6 191 290-480 12-245 (434)
188 3k9i_A BH0479 protein; putativ 97.8 2.4E-05 8.1E-10 64.6 5.4 93 396-489 3-99 (117)
189 1dce_A Protein (RAB geranylger 97.8 0.00081 2.8E-08 72.1 18.5 167 334-503 46-244 (567)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 3.3E-05 1.1E-09 77.3 6.6 147 348-514 179-328 (338)
191 3rkv_A Putative peptidylprolyl 97.7 8.4E-05 2.9E-09 65.3 8.5 76 419-494 63-141 (162)
192 2l6j_A TPR repeat-containing p 97.7 6.7E-05 2.3E-09 60.7 7.1 91 419-509 4-102 (111)
193 3ma5_A Tetratricopeptide repea 97.7 0.00015 5.1E-09 57.7 8.6 65 450-514 6-70 (100)
194 2if4_A ATFKBP42; FKBP-like, al 97.6 8.4E-05 2.9E-09 74.3 7.8 151 317-485 179-333 (338)
195 1na3_A Designed protein CTPR2; 97.6 0.00026 8.8E-09 54.7 8.9 81 419-499 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00027 9.2E-09 73.9 11.1 64 451-514 317-380 (457)
197 2kat_A Uncharacterized protein 97.5 0.00023 8E-09 58.1 8.1 78 437-514 3-82 (115)
198 3n71_A Histone lysine methyltr 97.5 0.00038 1.3E-08 72.8 11.0 124 264-411 327-463 (490)
199 1ihg_A Cyclophilin 40; ppiase 97.5 0.00044 1.5E-08 69.9 11.2 113 383-514 223-336 (370)
200 1zu2_A Mitochondrial import re 97.4 0.00011 3.8E-09 63.1 4.2 85 430-514 13-120 (158)
201 3bee_A Putative YFRE protein; 97.3 0.0011 3.7E-08 51.7 8.4 68 449-516 4-74 (93)
202 2l6j_A TPR repeat-containing p 97.3 0.0007 2.4E-08 54.5 7.7 65 450-514 3-67 (111)
203 3qwp_A SET and MYND domain-con 97.2 0.00057 2E-08 70.3 8.2 115 427-559 295-427 (429)
204 1klx_A Cysteine rich protein B 97.2 0.0021 7.3E-08 54.4 10.0 64 450-515 56-127 (138)
205 1na3_A Designed protein CTPR2; 97.1 0.0016 5.4E-08 50.1 7.5 64 451-514 9-72 (91)
206 1zu2_A Mitochondrial import re 97.0 0.00041 1.4E-08 59.6 4.0 73 436-515 63-148 (158)
207 1dce_A Protein (RAB geranylger 97.0 0.0079 2.7E-07 64.4 14.8 148 362-513 43-220 (567)
208 1klx_A Cysteine rich protein B 96.9 0.0031 1.1E-07 53.4 8.5 112 362-482 9-128 (138)
209 1wy6_A Hypothetical protein ST 96.9 0.075 2.6E-06 43.2 15.4 141 358-517 17-157 (172)
210 2kat_A Uncharacterized protein 96.9 0.0026 9E-08 51.6 7.6 79 402-483 4-85 (115)
211 3qww_A SET and MYND domain-con 96.8 0.0041 1.4E-07 63.8 10.1 92 396-487 311-423 (433)
212 3qwp_A SET and MYND domain-con 96.8 0.0072 2.5E-07 62.1 11.9 100 390-489 294-414 (429)
213 3qww_A SET and MYND domain-con 96.7 0.0018 6.2E-08 66.5 6.6 82 432-513 311-410 (433)
214 3ly7_A Transcriptional activat 96.7 0.029 9.9E-07 55.3 14.2 137 346-484 192-343 (372)
215 2kc7_A BFR218_protein; tetratr 96.7 0.0095 3.2E-07 46.6 9.1 64 425-488 6-72 (99)
216 2kc7_A BFR218_protein; tetratr 96.5 0.0055 1.9E-07 48.0 6.8 59 457-515 6-65 (99)
217 3ma5_A Tetratricopeptide repea 96.4 0.011 3.7E-07 46.6 8.1 62 348-410 7-68 (100)
218 3lvg_A Clathrin heavy chain 1; 96.3 2.9E-05 9.9E-10 77.7 -9.3 158 88-259 41-218 (624)
219 3mkq_A Coatomer beta'-subunit; 96.1 0.12 4.1E-06 58.0 17.7 130 286-445 633-762 (814)
220 1pc2_A Mitochondria fission pr 96.0 0.041 1.4E-06 46.6 9.6 65 449-513 30-99 (152)
221 3ly7_A Transcriptional activat 95.9 0.082 2.8E-06 52.1 12.6 132 379-514 190-339 (372)
222 3mkq_A Coatomer beta'-subunit; 95.8 0.094 3.2E-06 58.9 14.9 46 394-446 663-708 (814)
223 2v5f_A Prolyl 4-hydroxylase su 95.7 0.051 1.8E-06 43.0 8.8 71 421-491 7-86 (104)
224 3mkq_B Coatomer subunit alpha; 95.7 0.34 1.2E-05 42.0 14.4 129 325-477 13-141 (177)
225 3lvg_A Clathrin heavy chain 1; 95.7 0.0047 1.6E-07 62.2 2.8 399 69-507 53-534 (624)
226 3u64_A Protein TP_0956; tetrat 95.5 0.039 1.3E-06 52.1 8.1 86 435-520 179-275 (301)
227 3bee_A Putative YFRE protein; 95.1 0.089 3.1E-06 40.6 8.0 68 417-484 4-76 (93)
228 1pc2_A Mitochondria fission pr 94.8 0.069 2.4E-06 45.2 6.9 71 418-488 31-108 (152)
229 1wy6_A Hypothetical protein ST 93.3 2.9 9.9E-05 34.2 14.5 124 285-412 8-154 (172)
230 1nzn_A CGI-135 protein, fissio 93.2 0.54 1.8E-05 38.2 9.0 87 398-486 16-109 (126)
231 2v5f_A Prolyl 4-hydroxylase su 93.2 0.32 1.1E-05 38.3 7.7 65 450-514 4-75 (104)
232 3u64_A Protein TP_0956; tetrat 93.0 2.4 8.1E-05 40.1 14.3 112 329-445 133-266 (301)
233 4gns_B Protein CSD3, chitin bi 92.1 1.3 4.3E-05 48.4 13.0 54 459-512 345-398 (754)
234 1qsa_A Protein (soluble lytic 91.9 15 0.00052 39.1 22.7 265 175-479 73-347 (618)
235 3mkq_B Coatomer subunit alpha; 91.4 6.5 0.00022 34.0 18.8 129 291-446 14-142 (177)
236 1nzn_A CGI-135 protein, fissio 90.6 1.6 5.3E-05 35.5 8.9 87 362-451 15-107 (126)
237 1y8m_A FIS1; mitochondria, unk 90.4 6.7 0.00023 32.4 13.0 65 449-513 37-105 (144)
238 1qsa_A Protein (soluble lytic 89.3 25 0.00087 37.4 33.5 414 55-519 56-484 (618)
239 4gns_B Protein CSD3, chitin bi 88.0 5.3 0.00018 43.5 13.5 127 211-344 254-398 (754)
240 4h7y_A Dual specificity protei 86.8 2.5 8.6E-05 35.3 7.7 55 433-487 74-130 (161)
241 4ady_A RPN2, 26S proteasome re 86.5 26 0.0009 39.0 17.9 257 185-454 385-664 (963)
242 2ff4_A Probable regulatory pro 85.9 1.6 5.4E-05 43.9 7.6 68 454-521 174-246 (388)
243 4h7y_A Dual specificity protei 85.8 3.9 0.00013 34.1 8.4 105 203-316 11-128 (161)
244 3ffl_A Anaphase-promoting comp 85.7 2.3 7.8E-05 36.2 7.2 112 388-513 25-150 (167)
245 4b4t_P 26S proteasome regulato 83.6 28 0.00094 35.4 15.8 184 262-445 32-244 (445)
246 2uwj_G Type III export protein 83.5 13 0.00044 28.4 9.9 87 297-388 21-107 (115)
247 2p58_C Putative type III secre 83.0 14 0.00047 28.3 10.6 87 297-388 22-108 (116)
248 3txn_A 26S proteasome regulato 82.5 30 0.001 34.4 15.0 25 284-308 21-45 (394)
249 3lpz_A GET4 (YOR164C homolog); 81.5 39 0.0013 32.5 21.7 166 321-513 39-215 (336)
250 4ady_A RPN2, 26S proteasome re 81.2 74 0.0025 35.5 19.4 17 294-310 536-552 (963)
251 1v54_E Cytochrome C oxidase po 81.1 7.5 0.00025 29.8 7.5 63 363-427 25-87 (109)
252 2p58_C Putative type III secre 81.1 15 0.00053 28.0 9.1 80 152-235 20-99 (116)
253 4fhn_B Nucleoporin NUP120; pro 80.5 27 0.00094 40.5 16.1 65 453-517 901-970 (1139)
254 2uwj_G Type III export protein 80.1 15 0.00051 28.0 8.7 80 152-235 19-98 (115)
255 3ffl_A Anaphase-promoting comp 79.7 9.6 0.00033 32.4 8.7 23 424-446 127-149 (167)
256 3o48_A Mitochondria fission 1 79.5 12 0.0004 30.5 8.8 33 453-485 80-112 (134)
257 4fhn_B Nucleoporin NUP120; pro 78.5 61 0.0021 37.6 18.2 140 144-297 817-986 (1139)
258 1v54_E Cytochrome C oxidase po 74.8 15 0.00051 28.2 7.5 48 445-492 39-86 (109)
259 2wpv_A GET4, UPF0363 protein Y 73.9 63 0.0022 30.8 22.2 168 320-513 36-216 (312)
260 2y69_E Cytochrome C oxidase su 73.3 14 0.00049 30.0 7.5 62 364-427 69-130 (152)
261 2ff4_A Probable regulatory pro 73.3 10 0.00036 37.8 8.7 58 352-410 175-232 (388)
262 1y8m_A FIS1; mitochondria, unk 69.0 47 0.0016 27.4 9.9 36 452-487 78-113 (144)
263 1wdy_A 2-5A-dependent ribonucl 68.5 39 0.0013 31.1 11.4 47 295-341 192-240 (285)
264 1zbp_A Hypothetical protein VP 67.8 10 0.00034 35.3 6.4 57 428-484 6-64 (273)
265 2wpv_A GET4, UPF0363 protein Y 66.7 91 0.0031 29.7 22.2 83 315-412 132-217 (312)
266 3lpz_A GET4 (YOR164C homolog); 65.1 1E+02 0.0035 29.7 22.8 82 315-411 134-215 (336)
267 3ltm_A Alpha-REP4; protein eng 65.1 71 0.0024 27.9 16.2 169 69-252 32-200 (211)
268 2qx5_A Nucleoporin NIC96; mRNA 64.5 1.5E+02 0.0053 31.6 18.1 84 428-512 452-565 (661)
269 3esl_A Checkpoint serine/threo 63.8 46 0.0016 29.3 9.5 102 437-564 62-169 (202)
270 2y69_E Cytochrome C oxidase su 62.9 40 0.0014 27.4 8.1 59 122-182 72-130 (152)
271 3ltm_A Alpha-REP4; protein eng 61.2 84 0.0029 27.4 17.6 118 93-219 23-140 (211)
272 3o48_A Mitochondria fission 1 60.9 66 0.0023 26.1 9.5 74 378-452 35-112 (134)
273 3ltj_A Alpharep-4; protein eng 57.9 92 0.0032 26.9 18.0 19 172-190 88-106 (201)
274 1zbp_A Hypothetical protein VP 57.2 67 0.0023 29.7 9.8 119 358-486 7-135 (273)
275 3txn_A 26S proteasome regulato 55.6 1.6E+02 0.0056 29.0 20.6 291 177-516 22-345 (394)
276 4a1g_A Mitotic checkpoint seri 50.3 94 0.0032 25.9 8.8 49 470-518 84-134 (152)
277 3ltj_A Alpharep-4; protein eng 49.8 1.3E+02 0.0043 26.0 18.3 136 89-234 45-180 (201)
278 3kea_A K1L; tropism, ANK repea 49.8 1.4E+02 0.0049 27.5 11.7 163 55-230 13-183 (285)
279 3mv2_A Coatomer subunit alpha; 49.7 1.1E+02 0.0039 29.0 10.3 59 443-515 197-257 (325)
280 4b4t_P 26S proteasome regulato 48.6 2.2E+02 0.0077 28.6 22.7 184 296-479 30-246 (445)
281 1wdy_A 2-5A-dependent ribonucl 48.5 97 0.0033 28.3 10.3 24 178-201 6-29 (285)
282 2pk8_A Uncharacterized protein 47.3 11 0.00037 28.0 2.3 47 542-597 13-59 (103)
283 3eu9_A Huntingtin-interacting 44.8 57 0.0019 29.0 7.7 16 327-342 217-232 (240)
284 4b4t_R RPN7, 26S proteasome re 44.8 35 0.0012 34.4 6.6 59 386-445 134-194 (429)
285 2wvi_A Mitotic checkpoint seri 43.9 1.2E+02 0.0041 25.7 8.6 49 470-518 79-129 (164)
286 3jxi_A Vanilloid receptor-rela 43.5 26 0.00088 32.1 5.1 31 206-241 92-122 (260)
287 2nsz_A Programmed cell death p 43.2 86 0.003 25.2 7.5 62 320-381 10-76 (129)
288 2l0z_A Glycoprotein G2; zinc-b 43.0 7.7 0.00026 23.7 0.8 14 641-654 15-29 (42)
289 1k1a_A B-cell lymphoma 3-encod 42.5 46 0.0016 29.7 6.7 15 153-167 20-34 (241)
290 3eiq_C Programmed cell death p 42.2 1.7E+02 0.0058 28.4 10.7 218 209-436 58-305 (358)
291 2zu6_B Programmed cell death p 40.9 1.9E+02 0.0065 27.4 10.6 64 208-276 169-232 (307)
292 1n11_A Ankyrin; clathrin, BAND 39.7 2.5E+02 0.0085 27.7 12.4 21 180-200 116-136 (437)
293 4b4t_R RPN7, 26S proteasome re 38.9 1.9E+02 0.0064 29.0 11.0 57 319-375 133-195 (429)
294 2ion_A PDCD4, programmed cell 38.6 1.2E+02 0.004 25.3 7.8 26 178-203 13-38 (152)
295 2nsz_A Programmed cell death p 38.0 1.1E+02 0.0038 24.6 7.4 63 177-239 10-77 (129)
296 3eu9_A Huntingtin-interacting 38.0 1E+02 0.0035 27.2 8.3 207 292-515 16-237 (240)
297 3bqo_A Telomeric repeat-bindin 37.5 1.6E+02 0.0054 25.7 8.3 60 435-494 94-160 (211)
298 1n11_A Ankyrin; clathrin, BAND 34.5 2E+02 0.0067 28.5 10.5 15 430-444 286-300 (437)
299 2ion_A PDCD4, programmed cell 34.0 89 0.003 26.1 6.3 62 320-381 12-78 (152)
300 4b4t_S RPN3, 26S proteasome re 33.8 3.4E+02 0.012 27.9 11.6 180 317-516 231-431 (523)
301 3kea_A K1L; tropism, ANK repea 33.2 2.9E+02 0.0099 25.4 10.9 119 393-520 102-223 (285)
302 1ug3_A EIF4GI, eukaryotic prot 32.4 3.4E+02 0.012 26.0 11.2 61 177-237 14-78 (339)
303 3bu8_A Telomeric repeat-bindin 30.5 2E+02 0.007 25.4 8.0 22 324-345 121-142 (235)
304 4gq2_M Nucleoporin NUP120; bet 30.1 3.1E+02 0.011 30.8 12.0 126 75-218 815-949 (950)
305 4b4t_S RPN3, 26S proteasome re 28.8 1.3E+02 0.0044 30.9 7.6 62 384-445 232-296 (523)
306 1bpo_A Protein (clathrin); cla 28.4 3.6E+02 0.012 27.2 10.4 79 153-234 343-424 (494)
307 3aji_A 26S proteasome non-ATPa 28.3 1.4E+02 0.0049 26.1 7.5 179 107-306 7-193 (231)
308 3ygs_P Procaspase 9; apoptosis 28.2 52 0.0018 25.0 3.6 37 87-123 52-88 (97)
309 3hra_A Ankyrin repeat family p 28.1 2.5E+02 0.0086 23.7 8.9 181 77-276 9-201 (201)
310 2d2s_A Exocyst complex compone 27.6 2.1E+02 0.0072 25.8 8.2 21 109-129 24-44 (235)
311 1oai_A Nuclear RNA export fact 26.5 44 0.0015 22.7 2.5 30 250-283 28-57 (59)
312 3ygs_P Procaspase 9; apoptosis 25.9 78 0.0027 24.0 4.2 39 188-226 51-89 (97)
313 3twe_A Alpha4H; unknown functi 25.5 70 0.0024 16.7 2.5 18 543-560 2-19 (27)
314 2d2s_A Exocyst complex compone 25.1 2.5E+02 0.0084 25.4 8.1 45 468-514 76-120 (235)
315 1k1a_A B-cell lymphoma 3-encod 25.1 3.1E+02 0.011 23.9 9.2 25 291-315 15-39 (241)
316 2yru_A Steroid receptor RNA ac 24.2 1.3E+02 0.0043 23.9 5.2 43 268-311 48-90 (118)
317 4a1g_A Mitotic checkpoint seri 24.2 3.1E+02 0.011 22.8 8.4 47 193-239 84-135 (152)
318 2b7e_A PRE-mRNA processing pro 23.7 1.7E+02 0.0058 19.8 4.9 37 221-257 2-39 (59)
319 3l6a_A Eukaryotic translation 23.4 5.2E+02 0.018 25.1 12.7 63 177-239 15-82 (364)
320 2fe3_A Peroxide operon regulat 23.1 2E+02 0.0067 23.5 6.6 65 193-257 9-73 (145)
321 3jxi_A Vanilloid receptor-rela 22.6 1.7E+02 0.0057 26.4 6.9 46 212-257 9-63 (260)
322 2hgo_A CASSIICOLIN; toxin, dis 22.3 18 0.00061 19.1 -0.1 14 642-655 7-22 (27)
323 4aez_C MAD3, mitotic spindle c 21.8 3E+02 0.01 24.6 7.7 50 468-517 131-182 (223)
324 2p1h_A APAF-1, apoptotic prote 21.2 2.5E+02 0.0087 20.7 6.7 63 158-224 24-86 (94)
325 1qc6_A EVH1 domain from ENA/VA 21.1 31 0.001 28.1 1.1 40 603-650 44-87 (130)
326 2fe3_A Peroxide operon regulat 20.7 2.5E+02 0.0086 22.9 6.8 63 372-436 11-73 (145)
327 3ljn_A Hypothetical protein; a 20.4 4E+02 0.014 25.3 9.5 219 279-510 15-266 (364)
328 2zu6_B Programmed cell death p 20.1 5.5E+02 0.019 24.2 13.6 28 177-204 6-33 (307)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-38 Score=351.15 Aligned_cols=428 Identities=8% Similarity=-0.012 Sum_probs=347.1
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l 145 (655)
+++..++.++..|.+.| ++++|..+|+++. .|+..+|..++.+|.+.|++++|+.+|+.+ .. ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ--QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE-DL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT-CG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH-hc--cccchhHHHHH
Confidence 46667777777777777 7777777777764 356677777777777777777777777776 22 24667777777
Q ss_pred HHHHHccCCchHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeH
Q 035659 146 IKAAARLVQFRVGQAIHGMVIKS---------------SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVS 207 (655)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~ 207 (655)
+.++.+.|++++|.++++++... |.+.+..+|+.++.+|.+.|++++|.++|++|.+ | +..+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 77777777777777777642111 1122466777777777777777777777777654 2 2222
Q ss_pred HHH--------------------------------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 208 WNS--------------------------------------MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 208 ~~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
|.. ++..|.+.|++++|.++|++|.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 244455667777777777777654 4788899999999
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
+.+.|+++ +|+++|+++...+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+
T Consensus 315 ~~~~g~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 315 LFVRSRFI------DVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHTTCHH------HHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred HHHhcCHH------HHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999976 9999999998764 4467789999999999999999999999998764 5678899999999999
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999875 3568899999999999999999999999999863 347889999999999999999999999
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG--ASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+.+.+. ...+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++
T Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 465 QSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999864 2346789999999999999999999999987 45777 789999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|++..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-37 Score=340.44 Aligned_cols=445 Identities=9% Similarity=-0.044 Sum_probs=388.0
Q ss_pred CCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcC--CCCCcchHHHHH
Q 035659 36 HHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI--PQPNLYTWNTLI 110 (655)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~--~~~~~~~~~~li 110 (655)
++...+..++..+...++. ..++..+.. ..|+..+++.+..+|.+.| ++++|+.+|+++ ..+++.+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTG--DYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTT--CHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcC--cHHHHHHHHHHHhccccchhHHHHHH
Confidence 3455677888888877766 567777764 4568889999999999999 999999999999 468899999999
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcC--------------CCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNS--------------PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~--------------~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 176 (655)
.+|.+.|++++|+.+|+++.... +..++..+|..++.++.+.|++++|.++++.+++.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999652332 234467899999999999999999999999999876 333333
Q ss_pred HH--------------------------------------HHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHH
Q 035659 177 SN--------------------------------------SLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFV 216 (655)
Q Consensus 177 ~~--------------------------------------~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 216 (655)
+. .++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 33 335667788999999999999988 79999999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
+.|++++|+++|++|.+.+ +.+..++..++.++.+.|+.+ +|.++|+++... .+.+..++..++..|.+.|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN------KLYLISNDLVDR--HPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH------HHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH------HHHHHHHHHHhh--CcccHHHHHHHHHHHHHhc
Confidence 9999999999999999876 347889999999999999976 999999999865 3567889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999864 45688999999999999999999999998753 4788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
|.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ..
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99863 3478899999999999999999999999997642 44677 679999999999999999999999987 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 448 VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
.| +..+|..+..+|...|++++|.+.++++++++|+++.++..++++|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34 78999999999999999999999999999999999999999988774
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.5e-28 Score=255.09 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=172.3
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC---hHHHHHHHHHHHHCCCCCCCH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW---PNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~---~~~A~~l~~~m~~~~~~~p~~ 282 (655)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+....... .++|.++|++|...| +.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCCCH
Confidence 45888999999999999999999999999999999999999999998876543322 568999999999998 99999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK----SRDVFVWSTMIAGF 358 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~ 358 (655)
.||+++|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886 36888999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
++.|+.++|.++|++|++.|..|+..||+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999989999999998888887654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.9e-25 Score=230.50 Aligned_cols=373 Identities=14% Similarity=0.108 Sum_probs=309.6
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCc-chHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNE-FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
...+.+.|++++|+..|..+... .|+. ..+..+...+...|+++.|...++.+++.. +.+..++..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34566788999999998887333 3544 445555566778889999999998888875 667788999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCccccCCChHH
Q 035659 189 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD-EVTMVAVLSACAKKRDLEFGRWPNE 264 (655)
Q Consensus 189 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~ 264 (655)
++++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+.. |+ ...+..+...+...|+++ +
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~------~ 153 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLE------E 153 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHH------H
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHH------H
Confidence 99999999988753 4 45578999999999999999999999988753 54 445667777888888866 9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|++.|+++.... +-+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..
T Consensus 154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 154 AKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988753 4457788999999999999999999999999875 4567788899999999999999999998764
Q ss_pred ---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcch
Q 035659 345 ---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421 (655)
Q Consensus 345 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 421 (655)
..+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. ...+...
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH
Confidence 3467889999999999999999999999999853 224678888999999999999999999999864 3446788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
+..+...+.+.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++..|.+..+|..++.++...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999986 44454 6789999999999999999999999999999999999999999888766
Q ss_pred C
Q 035659 500 K 500 (655)
Q Consensus 500 ~ 500 (655)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.9e-27 Score=252.02 Aligned_cols=203 Identities=16% Similarity=0.235 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC---
Q 035659 222 EKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA--- 297 (655)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~--- 297 (655)
..+..+.+++.+.+..+.+ ..++.+|++|++.|+++ +|+++|++|.+.| +.||..||++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~------~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVL------EALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhh
Confidence 3455677888888876654 46889999999999977 9999999999998 99999999999999987654
Q ss_pred ------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHH
Q 035659 298 ------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 298 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 367 (655)
++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 789999999999999999999999999999999999999999999974 6999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc
Q 035659 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432 (655)
Q Consensus 368 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 432 (655)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999987 9999999999999998764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2e-24 Score=224.23 Aligned_cols=351 Identities=17% Similarity=0.128 Sum_probs=308.7
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChh
Q 035659 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFE 222 (655)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (655)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345678899999999999999885 55667788888999999999999999987654 46778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHH
Q 035659 223 KAIELYREMEMENVKPD-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDI 300 (655)
Q Consensus 223 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 300 (655)
+|+..|+++.+. .|+ ..+|..+..++.+.|+++ +|++.|+++... .|+ ...+..+...+...|++++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDME------GAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSS------HHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHH
Confidence 999999999875 354 567999999999999987 999999999874 354 4567778888899999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (655)
|.+.+.++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++....
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 154 AKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999875 45678999999999999999999999998863 35678999999999999999999999999885
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhH
Q 035659 378 KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P-IVPGASV 453 (655)
Q Consensus 378 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~ 453 (655)
.| +..++..+..++...|++++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ . .+++..+
T Consensus 233 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 233 --SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 44 5788889999999999999999999999863 44 4678999999999999999999999987 2 2346789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999998863
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.3e-22 Score=210.83 Aligned_cols=308 Identities=13% Similarity=0.077 Sum_probs=237.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 33455566666666666666666666665542 345566666666666666666666666666543 22355666666
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHH------------HHHHhccCCHHHHHHHHHHHHHc
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSV------------LSACAQLGAMDIGVQIHAKMKKQ 311 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~ 311 (655)
..+.+.|+++ +|++.|+++... .|+. ..+..+ ...+...|++++|...++.+.+.
T Consensus 102 ~~~~~~g~~~------~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 102 HLLLKQGKLD------EAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHTTCHH------HHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHH------HHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666654 666666666653 2332 333333 44588899999999999999987
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 035659 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFT 387 (655)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 387 (655)
. +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++... .|+.. .+.
T Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 249 (450)
T 2y4t_A 173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFA 249 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH
Confidence 5 56788999999999999999999999998863 57889999999999999999999999999874 45443 333
Q ss_pred HH------------HHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 035659 388 NV------------LCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP 449 (655)
Q Consensus 388 ~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 449 (655)
.+ ...|.+.|++++|..+|+.+.+. .|+ ..+|..+..+|.+.|++++|++.++++ ...|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 33 67899999999999999999864 454 457899999999999999999999986 3344
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 450 -GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 450 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+..+|..+..+|...|++++|...++++++++|.++..+..++.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988844
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=211.04 Aligned_cols=394 Identities=8% Similarity=-0.031 Sum_probs=279.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 185 (655)
|-.....+.+.|++++|+..|++++... ||..++..+..++.+.|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4444455555566666666666552221 455555555556666666666666666665554 344455555666666
Q ss_pred hcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHH---------------------------------
Q 035659 186 ICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYR--------------------------------- 229 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~--------------------------------- 229 (655)
+.|++++|...|+++.. .+......++..+........+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666655432 122222222222222211111111111
Q ss_pred --HHHHCCCC--------CC-HhhHHHHHHHHhc---cCccccCCChHHHHHHHHHHHH-----CCCC-------CCCHH
Q 035659 230 --EMEMENVK--------PD-EVTMVAVLSACAK---KRDLEFGRWPNEALSIFHELQL-----SKNV-------NPDEF 283 (655)
Q Consensus 230 --~m~~~g~~--------p~-~~t~~~ll~~~~~---~~~~~~~~~~~~A~~l~~~m~~-----~~~~-------~p~~~ 283 (655)
.+...... |+ ...+......+.. .|+++ +|+..|+++.. .... +.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD------KADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH------HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH------HHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11111100 11 3333334443443 67755 99999999987 3101 12345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
++..+...+...|++++|...++.+.+.... ..++..+...|.+.|++++|.+.|+.+.+ .+...|..+...|..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 7788888899999999999999999987633 88899999999999999999999998764 367789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999853 235678888888999999999999999999864 22356788999999999999999999
Q ss_pred HHHhC----CCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 441 FIEKM----PIVPG----ASVWGALLGACKI---HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 441 ~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.++++ +..++ ..+|..+...+.. .|++++|...++++++..|.+..++..++.+|.+.|++++|.+.++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99886 22222 4489999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-21 Score=207.43 Aligned_cols=404 Identities=11% Similarity=-0.034 Sum_probs=317.9
Q ss_pred hhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 035659 72 SASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149 (655)
Q Consensus 72 ~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~ 149 (655)
.+..+-..|.+.| ++++|+..|+++. .||..+|..+..+|.+.|++++|+..|++++... +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK--KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 4455567778888 9999999999875 4788889999999999999999999999984332 23456788888999
Q ss_pred HccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh-------------------------------
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV------------------------------- 198 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------------------------------- 198 (655)
...|++++|...++.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998886 4454555555554444332222222221
Q ss_pred -------hcCC---------C-CeeHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCC--------CCHhhHHH
Q 035659 199 -------MIGK---------K-DVVSWNSMISGFVQ---GGFFEKAIELYREMEM-----ENVK--------PDEVTMVA 245 (655)
Q Consensus 199 -------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 245 (655)
.... + +...|......+.. .|++++|+..|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1110 1 13344444554554 8999999999999988 3212 23567888
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 325 (655)
+...+...|+++ +|+..|+++.... |+...+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 243 ~~~~~~~~~~~~------~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 243 TGIFKFLKNDPL------GAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHSSCHH------HHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 888999999976 9999999998754 447788899999999999999999999998865 456788999999
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 326 MYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999874 3467789999999999999999999999998853 33567888888999999999999
Q ss_pred HHHHHHcchhcCccCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 403 RMFFNQMEPVYGVVPG----VKHYTCMVDMLGR---AGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~----~~~y~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764222222 3389999999999 99999999999886 2233 577889999999999999999999
Q ss_pred HHHHhccCCCCcchHHHH
Q 035659 474 CSHLLELEPENHGALVLL 491 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l 491 (655)
++++++++|.++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999887776655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.3e-20 Score=198.31 Aligned_cols=394 Identities=11% Similarity=0.030 Sum_probs=276.5
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 183 (655)
..|..+...+.+.|++++|+..|++++... +.+...+..+..++.+.|++++|.+.++.+++.. +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345555566666666666666666663221 2244555566666666666666666666666654 4455566666666
Q ss_pred HHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhh---------------
Q 035659 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME------NVKPDEVT--------------- 242 (655)
Q Consensus 184 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t--------------- 242 (655)
|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 666666666666665332 12222222333444444455566666555332 11122111
Q ss_pred ---------------HHHHHHHHhcc--------CccccCCChHHHHHHHHHHHHCCCCCCC--------HHHHHHHHHH
Q 035659 243 ---------------MVAVLSACAKK--------RDLEFGRWPNEALSIFHELQLSKNVNPD--------EFTFVSVLSA 291 (655)
Q Consensus 243 ---------------~~~ll~~~~~~--------~~~~~~~~~~~A~~l~~~m~~~~~~~p~--------~~t~~~ll~~ 291 (655)
...+...+... ++ +++|+.+|+++.... |+ ..++..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~------~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL------LTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHH------HHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHH------HHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHH
Confidence 11122121111 23 449999999998643 44 2346667778
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+...|++++|...+..+.+.. |+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 889999999999999999965 5588899999999999999999999998753 46788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--- 445 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--- 445 (655)
..|+++.... +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+.++++
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998853 224678888999999999999999999999864 2334678899999999999999999999886
Q ss_pred -C----CCCChhHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 446 -P----IVPGASVWGALLGACKIH----------ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 446 -~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
+ .......+..+...+... |++++|...++++++..|.+..++..++.+|...|++++|.+.++.
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 111223345556677777 9999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
..+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88753
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=3.5e-20 Score=196.05 Aligned_cols=362 Identities=12% Similarity=0.009 Sum_probs=266.6
Q ss_pred CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 035659 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181 (655)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 181 (655)
++..|..+...+.+.|++++|+.+|+.+... .+.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4556777777777888888888888777322 22356666777777777777777777777777765 44566677777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---e---eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc
Q 035659 182 HFYAICGDLAMAYCVFVMIGKKD---V---VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 255 (655)
.+|.+.|++++|...|+++.+.+ . .+|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 77777777777777777665422 2 44555544433222 2223444666777
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
++ +|+..|+++.... +.+..++..+..++.+.|++++|.+.+.++.+.. +.+..++..+...|.+.|++++
T Consensus 159 ~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 159 YT------AAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HH------HHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 65 9999999998753 5578889999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHhhcCC---CChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHc
Q 035659 336 ALEVFHTVKS---RDVFVWSTM------------IAGFAMYGCGREALDLFSRMQEAKVKPN-----AVTFTNVLCACSH 395 (655)
Q Consensus 336 A~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~ 395 (655)
|.+.|+++.. .+...+..+ ...+...|++++|+.+|+++.+. .|+ ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHH
Confidence 9999998853 344555554 78899999999999999999984 455 3467888889999
Q ss_pred cCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH------------
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGA------------ 460 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------ 460 (655)
.|++++|...++.+.+. .| +...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 308 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999998754 34 5789999999999999999999999987 55665 4566655533
Q ss_pred HHhcC-----CHHHHHHHHHH-HhccCCCCcc----------hHHHHHHHHHhcCCchh
Q 035659 461 CKIHE-----NVELAEYACSH-LLELEPENHG----------ALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 461 ~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 503 (655)
|...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 56777888886 6666665432 34455555555555444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=3e-18 Score=185.53 Aligned_cols=396 Identities=12% Similarity=0.014 Sum_probs=280.8
Q ss_pred hhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 035659 72 SASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148 (655)
Q Consensus 72 ~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~ 148 (655)
.+..+...|.+.| ++++|+..|+++. ..++.+|..+..+|.+.|++++|+..|++++... +.+..++..+..+
T Consensus 27 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAK--NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTT--CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 4455556666677 7777777777654 2355667777777777777777777777763322 2245566666667
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---------------------------
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--------------------------- 201 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------------------------- 201 (655)
+...|++++|...++ .+.. .|+. .+..+..+...+...+|...++.+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777774 2221 1211 1112223333334444555554442
Q ss_pred ----------CCCee---HHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCC--------HhhHHHHHHHHhc
Q 035659 202 ----------KKDVV---SWNSMISGFVQG--------GFFEKAIELYREMEMENVKPD--------EVTMVAVLSACAK 252 (655)
Q Consensus 202 ----------~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~ 252 (655)
..+.. .+..+...+... |++++|+.+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 22222 223333322222 47899999999998753 43 2356667778888
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 332 (655)
.|+++ +|+..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 256 ~~~~~------~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 256 KNNLL------DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp TTCHH------HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccHH------HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 88866 999999999874 5668888899999999999999999999999875 4568889999999999999
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 333 LDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 333 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
+++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998753 467789999999999999999999999998863 335668888889999999999999999998
Q ss_pred chhcCccCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 410 EPVYGVVPG----VKHYTCMVDMLGRA----------GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 410 ~~~~~~~p~----~~~y~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
.+...-.++ ...+..+...|.+. |++++|...+++. ...| +..+|..+...+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 764221222 11244556777888 9999999999986 3333 578899999999999999999999
Q ss_pred HHHHhccCCCCcchHH
Q 035659 474 CSHLLELEPENHGALV 489 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~ 489 (655)
+++++++.|.+.....
T Consensus 485 ~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999999998765544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.4e-17 Score=169.80 Aligned_cols=318 Identities=9% Similarity=0.038 Sum_probs=217.7
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHh
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQ 217 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 217 (655)
.+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34445555555666666666666665553 33455555555556666666666655555432 234455555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCC---C-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Q 035659 218 GGFFEKAIELYREMEMENVKP---D-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 293 (655)
.|++++|+..|++..+. .| + ...+..+. ... ....+..+...+.
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~-----------------------~~~-------~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV-----------------------KAD-------EMQRLRSQALDAF 131 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH-----------------------HHH-------HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHH-----------------------HHH-------HHHHHHHHHHHHH
Confidence 55555555555555443 12 1 11110000 000 0011223356788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
..|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|...
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998875 56778899999999999999999999998764 4677899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHH------------HHHHHHHccCcHHHHHHHHHHcchhcCccCCc-----chHHHHHHHHHhc
Q 035659 371 FSRMQEAKVKPN-AVTFT------------NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-----KHYTCMVDMLGRA 432 (655)
Q Consensus 371 ~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~y~~li~~~~~~ 432 (655)
|++..+. .|+ ...+. .+...+...|++++|...++.+.+. .|+. ..+..+...|.+.
T Consensus 211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHc
Confidence 9999875 343 23222 2255688889999999999988764 3442 2355677888899
Q ss_pred CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 433 GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999886 3334 577888899999999999999999999999999888887777776554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.2e-17 Score=166.25 Aligned_cols=293 Identities=13% Similarity=0.057 Sum_probs=202.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHH
Q 035659 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287 (655)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ 287 (655)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++ +|+..|+++.... +-+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~ 76 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSK------AALPDLTKVIALK--MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHH------HHHHHHHHHHHhC--CCcchHHHH
Confidence 3334444444444444444444444321 112334444444444444433 4444444444321 223344444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCC---CchhhHH------------HHHHHHHhcCCHHHHHHHHhhcCC---CChh
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQGIK---LNCYLTT------------SLIDMYTKCGNLDKALEVFHTVKS---RDVF 349 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 349 (655)
+...+...|++++|...+..+.+.. + .+...+. .+...+...|++++|.+.|+++.+ .+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 4445555555555555555554432 1 1222222 336788999999999999998753 4678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-chHH-----
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYT----- 423 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~----- 423 (655)
.|..+...|...|++++|+..++++.... +.+...+..+...+...|++++|...|+...+. .|+. ..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHH
Confidence 89999999999999999999999998853 346788888999999999999999999999864 3442 2222
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHhC-CCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 424 -------CMVDMLGRAGLLDEAVEFIEKM-PIVPGA-----SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 424 -------~li~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+...+.+.|++++|.+.++++ ...|+. ..+..+...+...|++++|...++++++.+|+++.++..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2366789999999999999986 333442 235567788999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|...|++++|.+.++...+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999998874
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.4e-17 Score=168.29 Aligned_cols=342 Identities=15% Similarity=0.106 Sum_probs=130.5
Q ss_pred cCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHH
Q 035659 82 LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161 (655)
Q Consensus 82 ~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 161 (655)
++| ++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 15 ~~~--~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIG--NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc--CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 567 8999999999997775 8999999999999999999999754 5888999999999999999999998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 035659 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241 (655)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (655)
+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8888775 45678899999999999999999988853 67778999999999999999998888866 3
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHH
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 321 (655)
.|..+..++.+.|+++ +|.+.++++ .+..+|..++.+|...|+++.|....
T Consensus 150 n~~~LA~~L~~Lg~yq------~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~---------------- 200 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQ------AAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCG---------------- 200 (449)
T ss_dssp CHHHHHHHHHTTTCHH------HHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTT----------------
T ss_pred hHHHHHHHHHHhccHH------HHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHH----------------
Confidence 5777777777777755 777777766 14566666666666666666663322
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCcH
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH--SGLV 399 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~ 399 (655)
..+. .++.....++..|.+.|++++|+.+++...... +-....|+.+.-++++ -+++
T Consensus 201 -------------------l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 201 -------------------LHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp -------------------TTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------HHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 2211 111112234555555666666666666555432 2233344444444433 3455
Q ss_pred HHHHHHHHHcchhcCccC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 400 DEGRMFFNQMEPVYGVVP------GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p------~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
.+.++.|..-. .+.| +...|.-++-.|..-++++.|...+-+-+ |+..--..+.....+-.+.|.--++
T Consensus 260 ~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYka 334 (449)
T 1b89_A 260 REHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRA 334 (449)
T ss_dssp HHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHH
Confidence 55555554332 3444 46788889999999999999887665542 2332333334444445555544444
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
..-.++..| ...+.|..++...=+...+.+
T Consensus 335 i~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 335 IQFYLEFKP---LLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HHHHHHHCG---GGHHHHHHHHGGGCCHHHHHH
T ss_pred HHHHHhcCH---HHHHHHHHHHHhccCcHHHHH
Confidence 444444333 334444444433333333333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.8e-16 Score=159.67 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
+|+.+++++.... +.+...+..+...+...| ++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 74 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 74 ELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444321 223344445555555555 5555555555555433 23344555566666666666666666655
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC-----
Q 035659 343 VKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG----- 414 (655)
Q Consensus 343 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----- 414 (655)
+.+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 432 234555556666677777777777777766642 23456666677777777777777777777664311
Q ss_pred --ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 415 --VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 415 --~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.......+..+...|.+.|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++.+|++...+..
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 1233567888888888889999998888876 222 356788889999999999999999999999999999999999
Q ss_pred HHHHHH-hcCCc
Q 035659 491 LSNIYA-KTGKW 501 (655)
Q Consensus 491 l~~~~~-~~g~~ 501 (655)
++.++. ..|+.
T Consensus 310 l~~~~~~~~g~~ 321 (330)
T 3hym_B 310 LGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTC-
T ss_pred HHHHHHHHhCch
Confidence 988884 44543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-16 Score=160.77 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=220.0
Q ss_pred CCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 035659 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316 (655)
Q Consensus 237 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 316 (655)
..+...+..+...+...|+++ +|+++|+++.... +.+...+..++.++...|++++|..++.++.+.. +.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~------~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFK------MCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred hhhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCC
Confidence 344555566666666666654 7777777766543 3445566677788889999999999999999875 456
Q ss_pred hhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 317 ~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
..++..+...|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 788999999999999 99999999998764 356789999999999999999999999998863 2245667778889
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C----------CCCChhHHHHHHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P----------IVPGASVWGALLGAC 461 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~~~~~ll~~~ 461 (655)
+...|++++|...++.+.+. ...+...+..+...|.+.|++++|...+++. . ...+..+|..+...+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999999999999999853 2334678899999999999999999999876 1 133467999999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...|++++|...++++++..|.+...+..++.+|...|++++|.+.+++..+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999987765
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.2e-17 Score=168.20 Aligned_cols=298 Identities=11% Similarity=-0.034 Sum_probs=201.6
Q ss_pred HHhcCCHHHHHH-HHhhcCC-----C--CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc
Q 035659 184 YAICGDLAMAYC-VFVMIGK-----K--DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255 (655)
Q Consensus 184 ~~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 255 (655)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7765433 1 34567777777777788888877777777653 2345566666666777776
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
++ +|++.|+++.... +.+..++..+...+...|++++|...+..+.+... .+...+..+... ..
T Consensus 114 ~~------~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-------~~ 177 (368)
T 1fch_A 114 EL------LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEG-------AG 177 (368)
T ss_dssp HH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC--------------
T ss_pred HH------HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHH-------hh
Confidence 54 7777777666543 33555666666666666777777766666666431 111111111000 00
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 336 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
. .. ....+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+.
T Consensus 178 ~-------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 246 (368)
T 1fch_A 178 G-------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-- 246 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred h-------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 0 00 001111222333 7889999999999998853221 4788888899999999999999999998764
Q ss_pred ccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------
Q 035659 415 VVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN------- 484 (655)
Q Consensus 415 ~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------- 484 (655)
.| +...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|.+
T Consensus 247 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 247 -RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 34 4678999999999999999999999886 3334 57889999999999999999999999999998877
Q ss_pred ----cchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 485 ----HGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 485 ----~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..+|..++.+|...|++++|..++++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78999999999999999999998763
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.8e-15 Score=158.46 Aligned_cols=367 Identities=11% Similarity=-0.036 Sum_probs=274.9
Q ss_pred CCcchHHHHHHHHHh----CCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCC
Q 035659 101 PNLYTWNTLIRAYSS----SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR----LVQFRVGQAIHGMVIKSSFED 172 (655)
Q Consensus 101 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 172 (655)
.++.++..+-..|.. .+++++|+..|++. ...| +...+..|-..+.. .++.++|.+.++...+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRA-AEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 355556666666665 67777777777777 4433 45566666666666 677788888888777765
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 173 DLFISNSLIHFYAI----CGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQ----GGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 173 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
+...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666677777777 6788888888877654 355677777777776 778888888888887764 56677
Q ss_pred HHHHHHHhc----cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCC
Q 035659 244 VAVLSACAK----KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIKL 315 (655)
Q Consensus 244 ~~ll~~~~~----~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~ 315 (655)
..+...|.. .++. ++|++.|++....+ +...+..+...+.. .++.++|...+++..+.|
T Consensus 187 ~~Lg~~y~~g~g~~~~~------~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERND------AISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp HHHHHHHHHTSSSCCCH------HHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHhcCCCCCcCH------HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 777777766 5554 48888888887654 45566666666664 788999999999888764
Q ss_pred chhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHH
Q 035659 316 NCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 316 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+...+..|..+|.. .++.++|.+.|+...+ .+...+..+...|... ++.++|+.+|++..+.| +...
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 35566777788877 8899999999988765 4667788888888887 89999999999998865 4556
Q ss_pred HHHHHHHHHccC---cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHH
Q 035659 386 FTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGALL 458 (655)
Q Consensus 386 ~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll 458 (655)
+..+...+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.++|++.-...+...+..|.
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666766676656 889999999998764 456788889999988 899999999998862234677888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 035659 459 GACKI----HENVELAEYACSHLLELEPE---NHGALVLLSNIYAK 497 (655)
Q Consensus 459 ~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 497 (655)
..|.. .++.++|...++++.+.+|+ ++.+...++.++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88888 89999999999999999854 66666666655543
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.2e-18 Score=172.02 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=134.9
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++ +|
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~E------eA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWE------EL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHH------HH
Confidence 6788999999999996664 899999999999999999999965 367779999999999999877 88
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
++.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+
T Consensus 81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8877666553 4557788899999999999999888874 367779999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHH
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l 425 (655)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~l 213 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEEL 213 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHH
Confidence 47999999999999999999999988 27889999999999999999996655443 2334446678
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc--CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH--ENVELAEYACSHLLELEP-----ENHGALVLLSNIYA 496 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 496 (655)
+..|.+.|++++|..+++.. +.++ ....|.-|.-++++. ++..+.++.|..-+...| .+...|..+...|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999874 5443 356777777777665 355566666665555556 67888999999999
Q ss_pred hcCCchhHHHH
Q 035659 497 KTGKWDNVSEL 507 (655)
Q Consensus 497 ~~g~~~~a~~~ 507 (655)
+.++|+.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.9e-14 Score=153.75 Aligned_cols=363 Identities=11% Similarity=-0.015 Sum_probs=299.3
Q ss_pred HHHHHHHhhhcCCCCCCcchHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 035659 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAAR----LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI----CGDLAMA 193 (655)
Q Consensus 122 A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 193 (655)
++..+... ...| |...+..+-..+.. .++++.|...++...+.| +...+..|..+|.. .++.++|
T Consensus 26 ~~~~~~~~-a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQK-AESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 34445444 3332 55666666666766 789999999999998875 56788889999999 8999999
Q ss_pred HHHHhhcCC-CCeeHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCccccCCChHH
Q 035659 194 YCVFVMIGK-KDVVSWNSMISGFVQ----GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK----KRDLEFGRWPNE 264 (655)
Q Consensus 194 ~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~ 264 (655)
...|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++. ++
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~------~~ 169 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY------VM 169 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH------HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH------HH
Confidence 999988765 467788889999988 889999999999998876 56777778777776 4554 49
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHH
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKA 336 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 336 (655)
|++.|++....+ +...+..+...+.. .++.++|.+.+.+..+.| +...+..|..+|.. .++.++|
T Consensus 170 A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 170 AREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999998765 56777888888877 899999999999999875 45678888888886 8999999
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHH
Q 035659 337 LEVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-----GLVDEGRMFF 406 (655)
Q Consensus 337 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~ 406 (655)
.+.|+...+ .+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999998765 467788888888888 899999999999998765 556666777777776 8999999999
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAG---LLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLE 479 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 479 (655)
+...+. + +...+..|..+|.+.| ++++|.++|++.-...+...+..|...|.. .+++++|...++++.+
T Consensus 320 ~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 998764 3 4567888888888867 789999999887323578899999999988 8999999999999998
Q ss_pred cCCCCcchHHHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 035659 480 LEPENHGALVLLSNIYAK----TGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 480 ~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 516 (655)
.+ ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 75 56889999999998 8999999999999988763
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.6e-14 Score=156.06 Aligned_cols=407 Identities=10% Similarity=0.031 Sum_probs=279.2
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--C-CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHH
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--P-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ 144 (655)
-|..+|..++. +.+.| +++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++ ... .|+...|..
T Consensus 11 ~~~~~w~~l~~-~~~~~--~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra-l~~--~p~~~lw~~ 84 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQ--PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC-LMK--VLHIDLWKC 84 (530)
T ss_dssp TCHHHHHHHHH-HHHSS--CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTT--CCCHHHHHH
T ss_pred CCHHHHHHHHH-HHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-Hhc--CCChHHHHH
Confidence 36778888888 46777 99999999988754 3 4557888999999999999999999988 332 366666666
Q ss_pred HHHHH-HccCCchHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCe--
Q 035659 145 VIKAA-ARLVQFRVGQA----IHGMVIKS-SFED-DLFISNSLIHFYAI---------CGDLAMAYCVFVMIGK-KDV-- 205 (655)
Q Consensus 145 ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~~~~-~~~-- 205 (655)
.+... ...|+.+.|++ +++.+++. |..| +..+|...+....+ .|+++.|+.+|++..+ |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 55433 34567766655 66666553 5433 45677777776655 5778888888877654 221
Q ss_pred -eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHH------HCC--
Q 035659 206 -VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ------LSK-- 276 (655)
Q Consensus 206 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~------~~~-- 276 (655)
..|..........|. ..+..++.+ ..+. +.+|..++.++. ...
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~~---------------------~~~~------~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIED---------------------RSRD------YMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHHT---------------------THHH------HHHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHHH---------------------hhHH------HHHHHHHHHHHHHHHHHhccccc
Confidence 122222111000010 001111110 1122 225655555421 111
Q ss_pred CCCCCH--------HHHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCCH
Q 035659 277 NVNPDE--------FTFVSVLSACAQ----LGAM----DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK-------CGNL 333 (655)
Q Consensus 277 ~~~p~~--------~t~~~ll~~~~~----~g~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~ 333 (655)
.++|+. ..|...+.-... .++. +.+..+|++++... +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 024442 344444433222 1232 46778899888863 5678889988888876 7998
Q ss_pred H-------HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHH
Q 035659 334 D-------KALEVFHTVKS---R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTFTNVLCACSHSGLVD 400 (655)
Q Consensus 334 ~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 400 (655)
+ +|..+|++..+ | +...|..++..+.+.|+.++|..+|+++.+ +.|+. ..|...+..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999998764 3 578899999999999999999999999998 45653 47888888888999999
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDM-LGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
+|.++|+...+. .|+ ...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999999853 333 3333332222 34689999999999976 3234 578999999999999999999999999
Q ss_pred HhccCCCCcc----hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 477 LLELEPENHG----ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 477 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+++..|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776654 6777788888899999999999988764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.8e-16 Score=161.08 Aligned_cols=317 Identities=11% Similarity=0.019 Sum_probs=199.1
Q ss_pred ChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHH-HHHHhhhcCCCCC--CcchHHHHHHHHHccCCchHHHHHHH
Q 035659 87 SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM-IFLQLVYNSPYFP--NEFTFPFVIKAAARLVQFRVGQAIHG 163 (655)
Q Consensus 87 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~ 163 (655)
.++.+...|+.+...+.. .+...|++++|++ .|.+.+....-.| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555555555443322 2334478888888 8876622222222 45668888888899999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 164 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.. |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 56778889999999999999999999987653 467889999999999999999999999998764 322
Q ss_pred h-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-chh
Q 035659 241 V-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCY 318 (655)
Q Consensus 241 ~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~ 318 (655)
. .+..+ +. . ... ..+.. .+. .+..+...|++++|...+.++.+..... +..
T Consensus 166 ~~~~~~~-------~~---------~-------~~~--~~~~~-~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 166 AHLVTPA-------EE---------G-------AGG--AGLGP-SKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp GGGCC-----------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHH-------HH---------H-------hhh--hcccH-HHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 1 11100 00 0 000 01110 111 1222236677777777777777654221 466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..++.+
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 777777777777888877777776542 356677777788888888888888888877642 2346677777778888
Q ss_pred cCcHHHHHHHHHHcchhcCccCC------------cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPG------------VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~------------~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|++++|...|+.+.+. .|+ ...|..+..+|.+.|+.++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888877653 222 46788888888888888888877654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.1e-14 Score=157.18 Aligned_cols=419 Identities=9% Similarity=-0.010 Sum_probs=283.8
Q ss_pred CcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcchHHHHHH
Q 035659 37 HPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIR 111 (655)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~~~~~li~ 111 (655)
+...+..++.. ...++. +.+++.+++. ++.+..+|..++..+.+.| +++.|+.+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~--~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAK--NYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34455555554 333444 7777777764 3457788999999999999 99999999999764 77777887775
Q ss_pred H-HHhCCCcHHHHH----HHHHhhhcCCCCCC-cchHHHHHHHHHc---------cCCchHHHHHHHHHHHhCCCCChhH
Q 035659 112 A-YSSSAEPIQSFM----IFLQLVYNSPYFPN-EFTFPFVIKAAAR---------LVQFRVGQAIHGMVIKSSFEDDLFI 176 (655)
Q Consensus 112 ~-~~~~g~~~~A~~----~~~~m~~~~~~~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~ 176 (655)
. ....|+.++|.+ +|+..+...|..|+ ...|...+....+ .|+++.|..+++.+++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677777765 77777445566554 3455666655443 6789999999999988321111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHH------HCC---CCCC--------
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME------MEN---VKPD-------- 239 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~-------- 239 (655)
|..........|. ..+..++.. +.+++.+|..++.++. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 4333322111111 112222211 2344566666665532 211 2333
Q ss_pred HhhHHHHHHHHhccCc-cccC-CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHH
Q 035659 240 EVTMVAVLSACAKKRD-LEFG-RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ-------LGAMD-------IGVQ 303 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~-~~~~-~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~ 303 (655)
...|...+......+. .+.. ....+|+.+|++..... +-+...|......+.+ .|+++ +|..
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1344444432222110 0000 00136778899888753 4467778777777765 78887 8999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DV-FVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (655)
++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ + +. ..|..++..+.+.|+.++|.++|++..+..
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 999998732355788999999999999999999999998753 3 33 489999999999999999999999998752
Q ss_pred CCCHHHHHHHHHH-HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--h
Q 035659 380 KPNAVTFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG--A 451 (655)
Q Consensus 380 ~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~ 451 (655)
+.+...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++. +..|+ .
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 2223333332222 34689999999999999865 34 4788999999999999999999999986 23332 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
..|...+.....+|+.+.+..+.+++.+..|.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 58999999999999999999999999998874
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=3.6e-14 Score=159.15 Aligned_cols=375 Identities=14% Similarity=0.123 Sum_probs=257.4
Q ss_pred hhHHHHhhhcCCCCChHHHHHHhhcCC-CC-----CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHH
Q 035659 73 ASKLFTPCALGTFSSLEYAREMFDQIP-QP-----NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146 (655)
Q Consensus 73 ~~~ll~~y~~~g~~~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll 146 (655)
-...+..|+..| .+.+|.++++++. ++ +...-|.++.+..+. +..+..+..... . .....-+.
T Consensus 988 Vs~~vKaf~~ag--lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL-d-------~~d~~eIA 1056 (1630)
T 1xi4_A 988 VSVTVKAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL-D-------NYDAPDIA 1056 (1630)
T ss_pred hHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh-h-------hccHHHHH
Confidence 344555555555 6666666666554 11 112344455544444 334444444333 1 11133355
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHH
Q 035659 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
..|...|.+++|.++++... ......+.+ +-..|++++|.++.+++. +..+|..+..++.+.|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 56666777777777777641 111112222 226677888888877663 46678888899999999999998
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
.|.+. -|...|..++.+|.+.|+++ +|++.|...++.. ++....+.++.+|++.++++....+.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyE------EAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWE------ELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHH------HHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 88653 46777888888999999876 8888888766532 34333445888888888887644442
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 2 345566677888888999999999999885 48888999999999999999998877 256888
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIH 464 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 464 (655)
..+-.+|...|.+..|......+ ..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 88888898888888888766543 234557778999999999999999999775 44443 44666666666554
Q ss_pred --CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCCchhHHHH
Q 035659 465 --ENVELAEYACSHLLELEP-----ENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 465 --g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
++..++.+.|..-....| .+...|.-+...|.+.|+|+.|...
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456666777776665544 5677888999999999999998853
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=9.9e-15 Score=155.14 Aligned_cols=326 Identities=11% Similarity=0.009 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCeeHHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCC-H
Q 035659 175 FISNSLIHFYAICGDLAMAYCVFVMIGK-----------KDVVSWNSMISGFVQ--GGFFEKAIELYREMEMENVKPD-E 240 (655)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~-~ 240 (655)
.+|+.+..+|...|++++|...|++..+ ....+++.+..++.. .+++++|++.|++..+. .|+ .
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCH
Confidence 3445555555555555555554443321 012233333333333 23455666666655543 232 2
Q ss_pred hhHHHHHHHHh---ccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCC
Q 035659 241 VTMVAVLSACA---KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGI 313 (655)
Q Consensus 241 ~t~~~ll~~~~---~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~ 313 (655)
..+..+..++. ..++.+ +|++.|++..... +.+...+..+...+.. .++.++|.+.+++..+..
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~------~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~- 243 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQ------NAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA- 243 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCC------CTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchHHH------HHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-
Confidence 23333332222 223322 5555555554432 2233344333333332 234556666666655543
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM-------------------YGCGREALDLF 371 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~ 371 (655)
+.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.. .+..++|...|
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455556666666666666666666665432 233444444443322 23356788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-
Q 035659 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK----HYTCMVD-MLGRAGLLDEAVEFIEKM- 445 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~y~~li~-~~~~~g~~~~A~~~~~~m- 445 (655)
++..+.. +.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|+..|++.
T Consensus 324 ~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 324 KKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877643 234566777888899999999999999988753 33322 2233332 234678999999998875
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 446 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
.+.|+...+... ...+..++++.++.+|.++.+|..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 400 ~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 400 KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 556665443322 3455677888889999999999999999999999999999999988865433333343
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=3.3e-15 Score=147.51 Aligned_cols=270 Identities=13% Similarity=0.055 Sum_probs=200.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPD--EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
....|++.+|+..++..... .|+ ......+.++|...|+.+ +|+..++. . -+|+..++..+...+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~------~al~~~~~---~--~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYG------VVLDEIKP---S--SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHH------HHHHHSCT---T--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHH------HHHHHhcc---c--CChhHHHHHHHHHHH
Confidence 34456666666665554332 222 224445556666666644 66554432 1 356677888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGI-KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (655)
...++.+.|.+.++++...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888899999999999888764 44567778888999999999999999998 567889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 372 SRMQEAKVKPNAVTF---TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
+++.+. .|+.... ...+..+...|++++|..+|+++.+. ...+...++.+..+|.+.|++++|++.+++. ..
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999985 4664321 12223344568999999999999875 3456788999999999999999999999986 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 448 VP-GASVWGALLGACKIHENVEL-AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.| +..+|..++..+...|+.++ +..+++++++.+|+++.+ .+...+.+.++++..-
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 44 57789999999999999865 678999999999988754 3445566666665543
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=181.55 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=123.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIG-------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997763 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------h
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN------C 317 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~ 317 (655)
+++|.++++.|+.. ++|.++|++|...| +.||..||++++.++.+.+-++.. +++ ..++.|+ .
T Consensus 204 ntLI~glcK~G~~~-----e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~ 272 (1134)
T 3spa_A 204 AAALQCMGRQDQDA-----GTIERCLEQMSQEG-LKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPV 272 (1134)
T ss_dssp HHHHHHHHHHTCCH-----HHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCC
T ss_pred HHHHHHHHhCCCcH-----HHHHHHHHHHHHcC-CCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccc
Confidence 99999999998752 38899999999998 999999999998766554333222 222 2344444 5
Q ss_pred hhHHHHHHHHHhcC
Q 035659 318 YLTTSLIDMYTKCG 331 (655)
Q Consensus 318 ~~~~~li~~~~~~g 331 (655)
.+...|.+.|.+.+
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 56677888888766
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=7.7e-16 Score=157.80 Aligned_cols=271 Identities=11% Similarity=0.005 Sum_probs=165.7
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISG 214 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 214 (655)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888888889999999999999998876 56788899999999999999999999988754 467889999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 293 (655)
|.+.|++++|+..|+++.+.. |+. ..+..+ ......+..+...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------------KGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------------ccchHHHHHHHHHHh
Confidence 999999999999999987642 221 111110 001122333344444
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
..|++++|.+.++++.+.... .+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+.
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555554311 1344555555555555555555555555432 244555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc----------cCCcchHHHHHHHHHhcCCHHHHH
Q 035659 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV----------VPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 370 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
.|+++.+.. +.+..++..+..++...|++++|...|+.+.+...- ..+...|..+..++...|+.+.|.
T Consensus 269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 666655531 123455555666666666666666666665532100 002456677777777777777777
Q ss_pred HHHHh
Q 035659 440 EFIEK 444 (655)
Q Consensus 440 ~~~~~ 444 (655)
++.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66655
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=9.8e-16 Score=157.02 Aligned_cols=261 Identities=13% Similarity=-0.020 Sum_probs=214.1
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 318 (655)
+...+..+...+.+.|+++ +|+..|+++.... +.+..++..+..++...|++++|...++++.+.. +.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLP------VTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLK 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred chhHHHHHHHHHHHCCCHH------HHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 4556888888999999976 9999999998764 5578899999999999999999999999999875 45688
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRD-------------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PNAV 384 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ 384 (655)
++..+...|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+.+|+++...... ++..
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 99999999999999999999999886421 123344578888999999999999999986422 1578
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+.+.+. ...+...|..+..+|.+.|++++|++.|+++ ...| +..+|..+...+.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999864 2335778999999999999999999999986 3344 4788999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 463 IHENVELAEYACSHLLELEPE------------NHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..|++++|...+++++++.|. +...+..++.++...|+.+.+.++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999998766 367889999999999999998877654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.8e-15 Score=150.69 Aligned_cols=261 Identities=13% Similarity=-0.004 Sum_probs=217.7
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 318 (655)
+...+..+...+...|+++ +|+.+|+++.... +.+...+..+..++...|++++|.+.++++.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLA------EAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hhHHHHHHHHHHHHhccHH------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH
Confidence 3455677778888889866 9999999998754 4577888899999999999999999999999875 55788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCC
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTM--------------IA-GFAMYGCGREALDLFSRMQEAKVK 380 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~ 380 (655)
++..+...|.+.|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 169 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-P 169 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-C
Confidence 8999999999999999999999987542 33333333 22 3677889999999999998864 3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHH
Q 035659 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALL 458 (655)
Q Consensus 381 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 458 (655)
.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36788888999999999999999999999864 2234678999999999999999999999886 3333 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPE------------NHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...|++++|...++++++..|. +...+..++.+|...|++++|.++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6889999999999999999999988643
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=7.2e-13 Score=148.83 Aligned_cols=405 Identities=12% Similarity=0.083 Sum_probs=295.3
Q ss_pred CcccHHHHHHHhcCcchH---HHHHHHHHHhC--CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHH
Q 035659 37 HPHPVFSLIKQCKNIKQL---KQIHTQMLRTG--LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111 (655)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g--~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~ 111 (655)
++.-.....+++...+.+ -.+++.++..+ +.-+..+.|.|+....+...++..+...-++.. + ...+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~---d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY---D---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc---c---HHHHHH
Confidence 344445556666666665 44555554221 223456777787776666533555555544422 2 344677
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.+...|.+++|..+|++. .. .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa-~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKF-DV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHc-CC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 888899999999999986 21 1122233332 667899998888754 45778999999999999999
Q ss_pred HHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHH
Q 035659 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271 (655)
Q Consensus 192 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~ 271 (655)
+|...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++ + ++-|
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle------e-le~f-- 1189 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA------E-LEEF-- 1189 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH------H-HHHH--
Confidence 999999765 678889999999999999999999999877764 34333445889999998764 3 3333
Q ss_pred HHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 035659 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351 (655)
Q Consensus 272 m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 351 (655)
.. .++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|
T Consensus 1190 -I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1190 -IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 21 356677788999999999999999999985 38999999999999999999999987 566899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLG 430 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~ 430 (655)
..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+. ...|+-|..+|.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHH
Confidence 9999999999999888887653 33466677789999999999999999998776 34432 446666666666
Q ss_pred h--cCCHHHHHHHHHh-CCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------cCCCCcchHH
Q 035659 431 R--AGLLDEAVEFIEK-MPIVP------GASVWGALLGACKIHENVELAEYACSHLLE------------LEPENHGALV 489 (655)
Q Consensus 431 ~--~g~~~~A~~~~~~-m~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~ 489 (655)
+ -+++.++.++|.. +.+.| +...|..+.-.|.+.|+++.|....-.-.. ..+.|+..|.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 5 4567777777755 44333 467899999999999999988833222211 1366777888
Q ss_pred HHHHHHHhcC
Q 035659 490 LLSNIYAKTG 499 (655)
Q Consensus 490 ~l~~~~~~~g 499 (655)
..+.-|...+
T Consensus 1406 kai~Fyl~~~ 1415 (1630)
T 1xi4_A 1406 RAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhhC
Confidence 7777777665
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=9.1e-17 Score=174.65 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=128.1
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHH---HCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREME---MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
..+||+||++|++.|++++|.++|++|. ..|+.||.+|||+||.+|++.|+++ +|.++|++|...| +.||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~------eA~~Lf~eM~~~G-~~PD 199 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK------ELVYVLFMVKDAG-LTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHH------HHHHHHHHHHHcC-CCCc
Confidence 3589999999999999999999998876 4589999999999999999999977 9999999999998 9999
Q ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHH
Q 035659 282 EFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWSTMI 355 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li 355 (655)
.+||+++|.++++.|. .+.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.+++..+..+ .+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 9999999999999998 5789999999999999999999999998888776666666655544421 133444455
Q ss_pred HHHHHcC
Q 035659 356 AGFAMYG 362 (655)
Q Consensus 356 ~~~~~~g 362 (655)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-13 Score=145.89 Aligned_cols=372 Identities=12% Similarity=-0.050 Sum_probs=216.6
Q ss_pred cchHHHHHHHHHhCCCcHHHHHHHHHhhhc----CC--CCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhC------
Q 035659 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYN----SP--YFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS------ 169 (655)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 169 (655)
+..||.|-..+...|++++|++.|++.... .+ ..| ...+|..+..++...|++++|...++.+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345677766777777777777777654211 11 122 23456667777777777777777777665431
Q ss_pred C-CCChhHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-CeeHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 170 F-EDDLFISNSLIHFYAIC--GDLAMAYCVFVMIGK--K-DVVSWNSMISG---FVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 170 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
. .....+++.+..++.+. +++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 0 11234555555455544 357788888876643 3 34444444433 344577778888887776643 2234
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhH
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 320 (655)
.++..+...+...+..... .++|.+.+++..... +.+...+..+...+...|++++|...+.++.+.. +.+..++
T Consensus 210 ~~~~~l~~~~~~~~~~~~~--~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEE--EGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHCC--------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 5555555554443322110 238888888877643 4556677888888888888888888888888764 4456666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 321 TSLIDMYTKC-------------------GNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 321 ~~li~~~~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
..+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 6666665432 23566777776654 3466789999999999999999999999998854
Q ss_pred CCCCHH--HHHHHHH-HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhH
Q 035659 379 VKPNAV--TFTNVLC-ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASV 453 (655)
Q Consensus 379 ~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 453 (655)
..|... .+..+.. .....|+.++|+..|.+..+ +.|+....... .+.+.+++++. .. +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 333221 1222222 34578999999999998874 45654332222 23333444332 22 235789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
|..|...+...|++++|++.++++++++|.++.+..-++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999988877665543
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=4.2e-14 Score=142.00 Aligned_cols=269 Identities=13% Similarity=0.013 Sum_probs=145.5
Q ss_pred chHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHH
Q 035659 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFV 216 (655)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 216 (655)
..+..+...+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344455555556666666666666666554 34555666666677777777777777765543 34566777777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--Hh
Q 035659 217 QGGFFEKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA--CA 293 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~--~~ 293 (655)
..|++++|++.|+++.+.. |+. ..+..+.. ..|+......+... +.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ-----------------------------ADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------------CCTT
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH-----------------------------HHHHHHHHHHHHHhHHHH
Confidence 7888888888877777652 221 11111100 01111111111111 34
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
..|++++|...+.++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555555555443 23445555555555555555555555555432 2345555666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-------------cchHHHHHHHHHhcCCHHH
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-------------VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~ 437 (655)
|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+. .|+ ...|..+..+|.+.|+.++
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 66665532 223455556666666666666666666665543 222 4456666666666666666
Q ss_pred HHHHHHhC
Q 035659 438 AVEFIEKM 445 (655)
Q Consensus 438 A~~~~~~m 445 (655)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 66666543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=1.6e-14 Score=142.60 Aligned_cols=243 Identities=9% Similarity=0.023 Sum_probs=197.7
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (655)
....|++. +|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|
T Consensus 9 ~~~~g~y~------~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 9 AFYIGSYQ------QCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHTTCHH------HHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence 34456644 88888876543 44554 3556678899999999999976644 2356788899999999
Q ss_pred HhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 328 TKCGNLDKALEVFHTVK----SR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.+.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999863 23 566778888999999999999999987 45778888899999999999999
Q ss_pred HHHHHHcchhcCccCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 403 RMFFNQMEPVYGVVPGVKHY---TCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~y---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.+.|+.+.+. .|+.... ..++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++
T Consensus 150 ~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999864 4664211 22334455569999999999997 23357889999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchh-HHHHHHHHHhC
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDN-VSELRKHMRVS 514 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 514 (655)
++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 56888887764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=8.1e-14 Score=134.62 Aligned_cols=220 Identities=9% Similarity=-0.024 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-------hhHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D-------VFVW 351 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~ 351 (655)
...+..+...+...|++++|...+.++.+.. .+..++..+...|...|++++|.+.|+...+. + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888999999999999999999987 78889999999999999999999999987642 1 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 431 (655)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+... ...+...+..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999984 4553 3456678999999999998753 22346788899999999
Q ss_pred cCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 432 AGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.|++++|.+.+++. .. ..+..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 22 23578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
...+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.8e-13 Score=128.82 Aligned_cols=194 Identities=14% Similarity=0.032 Sum_probs=148.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 390 (655)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888887654 356778888888888888888888888888743 22456777777
Q ss_pred HHHHcc-----------CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 391 CACSHS-----------GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 391 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
.++... |++++|...|+...+. .|+ ...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 788888 9999999999998854 554 677888999999999999999999886 222678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888754
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.7e-13 Score=130.10 Aligned_cols=238 Identities=11% Similarity=-0.065 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNP--DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
+++|+..|+++.......+ +..++..+...+...|++++|...+.++.+.. +.+..++..+...|.+.|++++|.+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 4599999999987641122 45678888999999999999999999999875 45788999999999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++..... .
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~ 174 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 174 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C
Confidence 998764 46789999999999999999999999999984 466555555556667789999999999888764 2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
|+......++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 252 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-- 252 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH--
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH--
Confidence 33333345777888889999999999886 33332 57888999999999999999999999999999775544
Q ss_pred HHHHHHhcCCchhHHHHH
Q 035659 491 LSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~ 508 (655)
..++...|++++|.+.+
T Consensus 253 -~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 -RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHhhHHHH
Confidence 56777888888887765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8e-13 Score=127.57 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=194.5
Q ss_pred HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc-
Q 035659 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK--LN- 316 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~- 316 (655)
...+..+...+...|+++ +|+..|++..... .+...+..+..++...|++++|...+..+.+.... ++
T Consensus 5 a~~~~~~g~~~~~~~~~~------~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFD------EAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhccHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 346777888888999976 9999999998764 67788999999999999999999999999875311 11
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 035659 317 ---CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCA 392 (655)
Q Consensus 317 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 392 (655)
..++..+...|.+.|++++|.+.|++..+.+.. ...+...|++++|+..++++... .| +...+..+...
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHH
Confidence 578999999999999999999999987642221 34577788999999999999884 34 45677788888
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
+...|++++|...|+.+.+. ...+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999864 2335778999999999999999999999886 3334 478899999999999999999
Q ss_pred HHHHHHHhccC------CCCcchHHHHHH
Q 035659 471 EYACSHLLELE------PENHGALVLLSN 493 (655)
Q Consensus 471 ~~~~~~~~~~~------p~~~~~~~~l~~ 493 (655)
...+++++++. |.+...+..+..
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 99999999998 776665555543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=1.1e-12 Score=138.02 Aligned_cols=372 Identities=7% Similarity=-0.056 Sum_probs=195.4
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF---RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
.+.+.|++++|+..|++. ...| +...+..+-..+...|+. ++|...++...+. +...+..|..++...|
T Consensus 12 ~~~~~g~~~~A~~~~~~a-a~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQL-AELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 334445555555555554 2222 122222222223333444 4555555554432 3333344444333333
Q ss_pred -----CHHHHHHHHhhcCCC-CeeHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccC
Q 035659 189 -----DLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEK---AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 189 -----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
+.++|...|++..++ +..++..|...|...+..++ +++.+......| +...+..+...|...+.++..
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 445555555444332 33345555555554443322 333333333332 234444555555555543311
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CC
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG---AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC----GN 332 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~ 332 (655)
.+++..+++.... + .|+ .+..+...+...| +.++|.+.+.+..+.| +++...+..|..+|... ++
T Consensus 161 --~~~a~~~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 161 --LDDVERICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp --HHHHHHHHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred --HHHHHHHHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 1234444444322 1 233 6666666777777 7788888888887776 45555556677777654 68
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----cHHHHHH
Q 035659 333 LDKALEVFHTVKSRDVFVWSTMIAG-F--AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG-----LVDEGRM 404 (655)
Q Consensus 333 ~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~ 404 (655)
.++|.+.|+.....+...+..+... | ...++.++|+++|++..+.| +...+..+...|. .| ++++|..
T Consensus 233 ~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 233 EKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888888887773356677777666 3 35778888888888888766 5556666665555 44 8888888
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSH 476 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 476 (655)
.|+... .-++..+..|..+|.. ..++++|..+|++.-..-+......|...|.. ..+.++|...+++
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 888775 2345566677777765 33788888888876223345556666666653 4578888888888
Q ss_pred HhccCCCCcchHHHHHHHH--HhcCCchhHHHHHHHHHh
Q 035659 477 LLELEPENHGALVLLSNIY--AKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 477 ~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 513 (655)
+.+.+++.. ...+..+. ...++.++|.++.++.++
T Consensus 384 A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 384 AKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 888775432 23333332 222345556666555443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.5e-12 Score=126.92 Aligned_cols=245 Identities=13% Similarity=0.057 Sum_probs=179.4
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hh
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN--CY 318 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~ 318 (655)
..+......+...|+++ +|+..|++..... +.+...+..+..++...|++++|.+.+.++.+.+..++ ..
T Consensus 4 ~~~~~~a~~~~~~~~~~------~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYA------EAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHH------HHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHHHHHhcCHH------HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 34555667777888866 9999999988753 33444778888888999999999999999888431122 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACS 394 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 394 (655)
.+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHH
Confidence 478888999999999999999988653 46678888999999999999999999988875 34 4555555552455
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------hhHHHHHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGL---LDEAVEFIEKM----PIVPG------ASVWGALLGA 460 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~ 460 (655)
..+++++|...|+.+.+. .|+ ...+..+...+...|+ +++|...+++. ...|+ ..+|..+...
T Consensus 154 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 556999999999988754 444 5667777888888787 77777777665 11233 2577778888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
+...|++++|...++++++++|+++.+...+.......
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 88899999999999999999998887776665554443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=1.4e-11 Score=129.66 Aligned_cols=347 Identities=9% Similarity=-0.042 Sum_probs=237.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCeeHHHHHHHHHHhCC--
Q 035659 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL---AMAYCVFVMIGKKDVVSWNSMISGFVQGG-- 219 (655)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 219 (655)
+...+.+.|++++|.++++.+.+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677899999999999999887 334455677777778888 99999999888778888888888666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 220 ---FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 220 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
++++|+..|++..+.|.. ..+..|...|...+..... .++.+.+.+....+ +......+...+...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~---~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN---VNAQQQISQWQAAG----YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT---CCHHHHHHHHHHHT----CTTHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCC
Confidence 788999999999987643 3677777777776654433 26777777776655 2335556666676666
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---CHHHHHHHHhhcCCC---ChhHHHHHHHHHHHc----CChHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSR---DVFVWSTMIAGFAMY----GCGRE 366 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~ 366 (655)
.++.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... ++.++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 44443333332322222334448889999999999 999999999987543 344446777777554 68999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-H--HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-----CHHHH
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCA-C--SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-----LLDEA 438 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-----~~~~A 438 (655)
|+.+|++.. .| +...+..+... + ...++.++|..+|+...+. | +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 43 44555555555 3 5689999999999998764 4 5667888888887 55 99999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchhHHHHHHH
Q 035659 439 VEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK----TGKWDNVSELRKH 510 (655)
Q Consensus 439 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 510 (655)
.++|++.- ..+...+..|...|.. ..+.++|...++++.+.+ ++.+...|+.+|.. ..+.++|...++.
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999987 6677888888877766 349999999999998754 56788899999985 4588999999999
Q ss_pred HHhCCC
Q 035659 511 MRVSGL 516 (655)
Q Consensus 511 m~~~g~ 516 (655)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 888775
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.8e-11 Score=119.59 Aligned_cols=224 Identities=14% Similarity=-0.005 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMI 355 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 355 (655)
+..++..+...+...|++++|.+.+.+..+. .+...+..+...|.. .|++++|.+.|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888899999999999999999983 355678889999999 9999999999998764 4678899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 356 AGFAM----YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 356 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77888888888888 99999999999999874 3 5667888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 035659 428 MLGR----AGLLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK-- 497 (655)
Q Consensus 428 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 497 (655)
.|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999886222367788889999999 9999999999999999876 6788999999999
Q ss_pred --cCCchhHHHHHHHHHhCCC
Q 035659 498 --TGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 498 --~g~~~~a~~~~~~m~~~g~ 516 (655)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999888663
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=7.4e-12 Score=120.53 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFA 359 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 359 (655)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 445556666666677777777777666653 33455666666666666666666666665432 24455555666666
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 438 (655)
..|++++|+++|+++...+..| +...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666655522233 2344445555555566666666666655542 111244455555555555555555
Q ss_pred HHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 439 VEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 439 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.+.++++ ... .+...+..+...+...|+.++|...++++++..|+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 5555554 222 23344555555555555555555555555555555443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.5e-12 Score=124.57 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
....+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666667777777777777776643 34556666666667777777777766666532 345566666666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666542 224455555666666666666666666666542 12234455556666666666666
Q ss_pred HHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 438 AVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 438 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
|.+.++++ .. ..+..+|..+...+...|++++|...++++++..|++..++..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 66666554 11 123455566666666666666666666666666666555544443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=8e-12 Score=120.29 Aligned_cols=197 Identities=12% Similarity=-0.025 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998753 467889999999999999999999999998863 33677888888999
Q ss_pred HccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
...|++++|..+++.+.+. +..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3455 3667888999999999999999999886 2233 578899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
...++++++..|.+...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999987753
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.1e-11 Score=116.83 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
.++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.... +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3444444444445555555554444321 233445555555555555555555555555432 223445555555555
Q ss_pred cc-CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 395 HS-GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 395 ~~-g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
.. |++++|..+++.+.+. +..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 66 6666666666655541 22222 344555556666666666666666554 1122 345566666666666666666
Q ss_pred HHHHHHHhccCC-CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 471 EYACSHLLELEP-ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 471 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...++++++..| .+...+..++..+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666 6666666666666666666666666666544
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.9e-11 Score=115.13 Aligned_cols=208 Identities=13% Similarity=-0.022 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45677888889999999999999999999875 45678899999999999999999999998753 467789999999
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 358 FAMY-GCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 358 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
|... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|...++.+.+. ...+...+..+...|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 9999 999999999999988433444 567788888999999999999999998864 123477889999999999999
Q ss_pred HHHHHHHHhC-CCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 436 DEAVEFIEKM-PIV--PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 436 ~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
++|.+.++++ ... .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999886 222 3567787788888999999999999999999999887665544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=1.4e-12 Score=127.24 Aligned_cols=239 Identities=10% Similarity=-0.038 Sum_probs=126.8
Q ss_pred CCCcHHHHHHHHHhhhcCCC-CC--CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPY-FP--NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (655)
.|++++|+..|+++ ..... .+ +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35556666666665 22211 11 23344455555555566666666666555553 3345555555555555555555
Q ss_pred HHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHH
Q 035659 193 AYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 193 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~ 269 (655)
|...|++..+ .+..+|..+...|.+.|++++|+..|+++.+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----------------------------------- 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----------------------------------- 140 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------
Confidence 5555554432 23445555555555555555555555554432
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC--
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD-- 347 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 347 (655)
.|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|.+.++.....+
T Consensus 141 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 141 ---------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred ---------CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 2222222233333344566666666665555543 2233333 35555666666667777776665432
Q ss_pred -----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 348 -----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 348 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
...|..+...|...|++++|...|++.... .|+. +.....++...|++++|.+.+
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 356777777788888888888888887764 3432 122234566677777777665
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=2.7e-12 Score=122.64 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=155.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
.....+..+...+.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556778888899999999999999998854 367789999999999999999999999998863 336778888889
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+...|++++|.++++.+.+. ...+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 2335678889999999999999999999886 22 2357889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...++++++..|.+..++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998774
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=6.2e-12 Score=118.23 Aligned_cols=192 Identities=14% Similarity=0.074 Sum_probs=86.5
Q ss_pred CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 035659 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317 (655)
Q Consensus 238 p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 317 (655)
++...+..+...+.+.|+++ +|+..|++..... +.+...+..+..++.+.|++++|...++++++.. +.+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~------~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYD------AALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 34445555555555566544 6666666655432 3344555555555666666666666666665543 3344
Q ss_pred hhHHHHHHHHHhc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 318 YLTTSLIDMYTKC-----------GNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 318 ~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
..+..+..+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 4555555555555 444444444444321 123344444444444444444444444444433 334
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
..+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.|++++|.+.++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444444444321 22 23334444444444444444444443
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=1.7e-11 Score=119.49 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=185.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDV----FVWSTMIAG 357 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 357 (655)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556677889999999999999999865 44566899999999999999999999998765 222 348899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~ 436 (655)
|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .| +...|..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998853 235678888999999999999999999999853 44 4566777773444556999
Q ss_pred HHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCchh
Q 035659 437 EAVEFIEKM-PIVPG-ASVWGALLGACKIHEN---VELAEYACSHLLELE---PEN-----HGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 437 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 503 (655)
+|.+.+++. ...|+ ...|..+...+...|+ .++|...++++++.. |+. ..+|..++..|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999887 33444 6788888888888888 888999999998875 432 2578889999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=1.1e-11 Score=126.47 Aligned_cols=244 Identities=9% Similarity=0.056 Sum_probs=192.8
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhh
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYL 319 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~ 319 (655)
..|..+...+.+.|+++ +|++.|++..... +-+...|..+..++...|+ +++|...++++++.. +.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~------~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSE------RAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHTCCCH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHCCChH------HHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 45666667777778866 9999999998753 4457788888888999996 999999999999876 457888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH- 395 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 395 (655)
|+.+..+|.+.|++++|+..|+++.+ .+...|..+...+.+.|++++|+..|+++++... -+...|..+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Confidence 99999999999999999999998763 4778899999999999999999999999988532 256778888888888
Q ss_pred cCcHHHH-----HHHHHHcchhcCccCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC-
Q 035659 396 SGLVDEG-----RMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAG--LLDEAVEFIEKMPIVPG-ASVWGALLGACKIHE- 465 (655)
Q Consensus 396 ~g~~~~a-----~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g- 465 (655)
.|..++| +..|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 5654666 477887764 3454 567888888888888 58889888887744454 567788888887764
Q ss_pred --------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHh
Q 035659 466 --------NVELAEYACSHL-LELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 466 --------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 497 (655)
..++|+.+++++ .+.+|.....|..++..+..
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999888888877776654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.1e-12 Score=131.62 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CC-CchhhHHHHHHHHHhcCC--------------------HHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IK-LNCYLTTSLIDMYTKCGN--------------------LDKA 336 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~--------------------~~~A 336 (655)
..++..+...+...|++++|...+.++.+.. -. ....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4466777778888888888888888776531 11 124477788888888888 8888
Q ss_pred HHHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHH
Q 035659 337 LEVFHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN----AVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 337 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a 402 (655)
.+.+++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888776532 1 234688888889999999999999988865311 112 23677788889999999999
Q ss_pred HHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHH
Q 035659 403 RMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a 470 (655)
..+++...+...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987653211122 457788889999999999999998875 11122 55788888999999999999
Q ss_pred HHHHHHHhccC------CCCcchHHHHHHHHHhcCCchh
Q 035659 471 EYACSHLLELE------PENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 471 ~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
...+++++++. +....++..++.+|...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999998863 2234567788888888887643
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=8.8e-12 Score=129.09 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=210.8
Q ss_pred CCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-
Q 035659 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ- 311 (655)
Q Consensus 237 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~- 311 (655)
.+....+......+...|+++ +|+..|++..... +.+ ...+..+...+...|++++|...+.++.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCR------AGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344556677778888899966 9999999998754 223 356778888999999999999999987653
Q ss_pred ---CCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC---------------
Q 035659 312 ---GIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGC--------------- 363 (655)
Q Consensus 312 ---g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------- 363 (655)
+.. ....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 212 2356788899999999999999999987653 12 3478888999999999
Q ss_pred -----hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHH
Q 035659 364 -----GREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDML 429 (655)
Q Consensus 364 -----~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~ 429 (655)
+++|+..+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999887542 1112 1346777888899999999999999998764222222 33788899999
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIY 495 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~ 495 (655)
...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999875 11112 4678888999999999999999999999875332 55788999999
Q ss_pred HhcCCchhHHHHHHHHHh
Q 035659 496 AKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~ 513 (655)
...|++++|.+.+++..+
T Consensus 318 ~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=6.2e-11 Score=115.71 Aligned_cols=226 Identities=12% Similarity=0.006 Sum_probs=192.9
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCC
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIK 314 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 314 (655)
+..++..+...+...++++ +|++.|++....+ +...+..+...+.. .+++++|...+.+..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~------~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFT------QAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHhCCCHH------HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--
Confidence 4566777788888888866 9999999998743 45677888888888 999999999999999976
Q ss_pred CchhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 315 LNCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 315 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+...+..+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .++.++|+..|++..+.+ +...
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 67788899999999 9999999999998764 467889999999999 999999999999999876 5667
Q ss_pred HHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 386 FTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 386 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|.+.+++.-...+...+..+
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 224 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777887 89999999999998764 246778889999999 99999999999886212247788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhccCCCC
Q 035659 458 LGACKI----HENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 458 l~~~~~----~g~~~~a~~~~~~~~~~~p~~ 484 (655)
...+.. .+++++|...++++.+.+|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 899988 999999999999999999864
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=4.3e-12 Score=131.99 Aligned_cols=265 Identities=11% Similarity=0.005 Sum_probs=207.4
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKKQ----G- 312 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g- 312 (655)
.+..+...+...|+++ +|+..|++..... +.+. ..+..+...+...|++++|...++++.+. +
T Consensus 50 ~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCR------AGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 3445666778888866 9999999998854 2232 46788888999999999999999988764 1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---------DVFVWSTMIAGFAMYGC-----------------GRE 366 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~ 366 (655)
.+....++..+...|...|++++|.+.|++..+. ...+|..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 1234577888999999999999999999886531 24578888999999999 999
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHH
Q 035659 367 ALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 367 A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~ 437 (655)
|++.+++..+. +..+ ....+..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999887542 1111 2346777888899999999999999998764221122 2378889999999999999
Q ss_pred HHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCchh
Q 035659 438 AVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 438 A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~ 503 (655)
|.+.+++. +...+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 99999875 11111 4678888999999999999999999999875332 3488899999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987663
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=8e-12 Score=127.56 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN-LDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
...|..+..++.+.|++++|.+.++++++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888899999999999999999976 5578899999999999997 9999999998764 477899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHh-cCCH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGR-AGLL 435 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~-~g~~ 435 (655)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+.+.+. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999853 226788889999999999999999999999864 45 46789999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-------
Q 035659 436 DEA-----VEFIEKM-PIVP-GASVWGALLGACKIHE--NVELAEYACSHLLELEPENHGALVLLSNIYAKTG------- 499 (655)
Q Consensus 436 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 499 (655)
++| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|++..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 3445 4679999999999888 689999999998 888999999999999999875
Q ss_pred --CchhHHHHHHHH-Hh
Q 035659 500 --KWDNVSELRKHM-RV 513 (655)
Q Consensus 500 --~~~~a~~~~~~m-~~ 513 (655)
..++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 258899999987 44
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=3e-12 Score=135.64 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL-DKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
++.+.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34566666777777777777 777777776542 3466788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc--------CCH
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHS---------GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA--------GLL 435 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~--------g~~ 435 (655)
..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57778888888888888 9999999999998864 44 467888889999888 999
Q ss_pred HHHHHHHHhC-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP----GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++|++.|++. ...| +...|..+...+...|++++|...++++++++|++..++..++.++...|++++|.+.++.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999886 4445 6789999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 035659 511 M 511 (655)
Q Consensus 511 m 511 (655)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.4e-11 Score=123.70 Aligned_cols=265 Identities=15% Similarity=0.087 Sum_probs=205.4
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GI 313 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~ 313 (655)
.+......+...|+++ +|+..|+++.... +.+ ...+..+...+...|++++|.+.+.++.+. +.
T Consensus 7 ~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCR------AGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccHH------HHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 3444566777888866 9999999998754 223 357778888999999999999999987653 21
Q ss_pred C-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------
Q 035659 314 K-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGC-------------------- 363 (655)
Q Consensus 314 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-------------------- 363 (655)
. ....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 2 2366788899999999999999999988653 22 3478888899999999
Q ss_pred hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCC
Q 035659 364 GREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGL 434 (655)
Q Consensus 364 ~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~ 434 (655)
+++|.+.+++.... +..| ....+..+...+...|++++|...++...+...-.++ ...+..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999887542 1111 2346777778899999999999999988754222222 3378888999999999
Q ss_pred HHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCC
Q 035659 435 LDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIYAKTGK 500 (655)
Q Consensus 435 ~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 500 (655)
+++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999875 11122 5577888899999999999999999998875432 3478889999999999
Q ss_pred chhHHHHHHHHHhC
Q 035659 501 WDNVSELRKHMRVS 514 (655)
Q Consensus 501 ~~~a~~~~~~m~~~ 514 (655)
+++|.+.+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988764
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=5.4e-11 Score=108.40 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+...... ...+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34567777777777777777777777777642 124566777777777888888888887777643 122355666677
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877765 2223 4677888888888889999999999999999998888888999999999999999
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9888887663
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=2.1e-11 Score=126.75 Aligned_cols=201 Identities=11% Similarity=0.056 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----G-IKLNCYLTTSLIDMYTKCGN-----------------LDKALEV 339 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 339 (655)
...+..+...+...|++++|...+.++.+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777888888999999999998887764 1 12335578888889999999 8999888
Q ss_pred HhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHH
Q 035659 340 FHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 340 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
+++..+ . ....|..+...|...|++++|+..|++..+.... ++ ...+..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 877542 1 2347888889999999999999999988763111 12 23677888889999999999999
Q ss_pred HHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 035659 406 FNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI---VPG----ASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 406 ~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
++...+...-..+ ...+..+...|...|++++|.+.+++. .+ .++ ..++..+...+...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9988754211111 467888899999999999999999876 11 112 35778888999999999999999
Q ss_pred HHHHhccCC
Q 035659 474 CSHLLELEP 482 (655)
Q Consensus 474 ~~~~~~~~p 482 (655)
+++++++.+
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999998865
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=2.2e-09 Score=116.89 Aligned_cols=421 Identities=9% Similarity=0.017 Sum_probs=283.1
Q ss_pred HHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCC---cHHHHHHHHHhh
Q 035659 57 IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAE---PIQSFMIFLQLV 130 (655)
Q Consensus 57 ~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 130 (655)
.++..+... +-|...|..++..+.+.+ .++.|+.+|+++.. .....|..-+..-.+.+. .+.+..+|++.+
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 444444443 358899999999999998 99999999998863 345568888888888888 999999999983
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCc--------hHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------cCCH
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQF--------RVGQAIHGMVIK-SSF-EDD-LFISNSLIHFYAI---------CGDL 190 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~ 190 (655)
......|+...|..-+.-..+.++. +...++|+.++. .|. .++ ..+|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 3222247777777777666555543 344577877665 465 454 5688888876543 3457
Q ss_pred HHHHHHHhhcCC-CCe---eHHH---HHHHHHH----------hCCChhHHHHHHHHHHHC--CCC---CC---------
Q 035659 191 AMAYCVFVMIGK-KDV---VSWN---SMISGFV----------QGGFFEKAIELYREMEME--NVK---PD--------- 239 (655)
Q Consensus 191 ~~A~~~f~~~~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---p~--------- 239 (655)
+.++++|++... |-. ..|. .+...+. ....++.|...+.++... ++. |.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 889999988765 211 2332 2222210 011234445555543221 111 10
Q ss_pred -----------HhhHHHHHHHHhccCc-cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHH
Q 035659 240 -----------EVTMVAVLSACAKKRD-LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV-QIHA 306 (655)
Q Consensus 240 -----------~~t~~~ll~~~~~~~~-~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~ 306 (655)
...|...+.---..+. ++.....+.+..+|++.... ++-+...|...+.-+...|+.+.|. ++++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1223333332222210 00000012455678887765 3556777777777778888988996 9999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-------------C------------ChhHHHHHHHHHHHc
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-------------R------------DVFVWSTMIAGFAMY 361 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~ 361 (655)
+.+.. ++.+...|-.++...-+.|+++.|.++|+.+.. | ....|...+....+.
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99875 356777888899999999999999999998753 2 123688888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH-SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
|..+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.+ .-+...+...++.....|+.+.|..
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999875111123334333222223 355899999999998753 2345567788888889999999999
Q ss_pred HHHhC-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 441 FIEKM-PIVP----GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 441 ~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99986 3233 346899999999999999999999999999999764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=4.5e-11 Score=119.88 Aligned_cols=264 Identities=12% Similarity=0.060 Sum_probs=173.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC----CCCCC-CH
Q 035659 212 ISGFVQGGFFEKAIELYREMEMENVKPD----EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS----KNVNP-DE 282 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~----~~~~p-~~ 282 (655)
...+...|++++|+..|+++.+.... + ...+..+...+...|+++ +|++.+++.... + ..| ..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~~~~~~-~~~~~~ 83 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYA------KALEYHHHDLTLARTIG-DQLGEA 83 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHhhccc-ccHHHH
Confidence 34444455555555555554443211 1 133444444455555533 455444443221 1 112 24
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CC-CchhhHHHHHHHHHhcCC--------------------HHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IK-LNCYLTTSLIDMYTKCGN--------------------LDKAL 337 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~--------------------~~~A~ 337 (655)
.++..+...+...|++++|...+.+..+.. -. ....++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 467777778888899999988888876531 11 113477788888888888 88888
Q ss_pred HHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHH
Q 035659 338 EVFHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN----AVTFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 338 ~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~ 403 (655)
+.+++... . ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88876532 1 234678888889999999999999988765311 011 236777788889999999999
Q ss_pred HHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 035659 404 MFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 471 (655)
.+++...+...-.++ ...+..+...|...|++++|...+++. +...+ ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987653221122 456788889999999999999998875 11112 457788889999999999999
Q ss_pred HHHHHHhccCCC
Q 035659 472 YACSHLLELEPE 483 (655)
Q Consensus 472 ~~~~~~~~~~p~ 483 (655)
..+++++++.+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.1e-10 Score=120.11 Aligned_cols=225 Identities=9% Similarity=0.022 Sum_probs=172.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhHHH
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQ----GIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----R-----DVFVWS 352 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 352 (655)
....+...|++++|...+.++.+. +-++ ...++..+...|...|++++|...+++..+ . ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999874 2122 356888999999999999999998887642 1 135788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHcchhc---Cc-cCCcchHH
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GV-VPGVKHYT 423 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~y~ 423 (655)
.+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...|++..+.. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753111 12 2467788889999999999999999887621 12 22256788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKM-PI-----VPG-ASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999875 11 122 2335667778888888 77777777776 223445567889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=4.9e-10 Score=111.48 Aligned_cols=219 Identities=11% Similarity=0.058 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACA-------QLGAM-------DIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
++|+..|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 38888999988753 455667777777665 35775 899999999998422456678999999999
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHH
Q 035659 329 KCGNLDKALEVFHTVKS--R-DVF-VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-SHSGLVDEGR 403 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 403 (655)
+.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998765 2 343 79999999999999999999999998853 23444454433332 2369999999
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P---IVP--GASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.+|+...+.. .-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988642 224678888899999999999999999886 2 344 3568999999999999999999999999
Q ss_pred hccCCCCcc
Q 035659 478 LELEPENHG 486 (655)
Q Consensus 478 ~~~~p~~~~ 486 (655)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999987653
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=8e-12 Score=124.20 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-------GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-------- 345 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 345 (655)
+..++..+...+...|++++|..++.++.+. ..+....++..+...|...|++++|...|++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999999874 3345567888999999999999999999987642
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC-
Q 035659 346 ---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEA------KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG- 414 (655)
Q Consensus 346 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 414 (655)
....+|..+...|...|++++|...|+++.+. +..| ....+..+...+...|++++|..+++.+.+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 13467888899999999999999999998764 2223 345677788889999999999999998875311
Q ss_pred ----ccC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-hhHH------HHHHHHHHhcCCHHHHHH
Q 035659 415 ----VVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKMP----------IVPG-ASVW------GALLGACKIHENVELAEY 472 (655)
Q Consensus 415 ----~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~------~~ll~~~~~~g~~~~a~~ 472 (655)
..| ....+..+...|.+.|++++|.+.++++- ..+. ...| ..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 122 24578888999999999999999998761 1111 1222 222333445556666677
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.++++....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77887777888888999999999999999999999988765
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=8.5e-11 Score=129.60 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=133.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTC 424 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~ 424 (655)
+..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777888888888888888887774 44 3667778888888888888888888888753 554 667888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|+..++++++++|++..++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888999999998888875 44454 6789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 035659 503 NVSELRKHMRV 513 (655)
Q Consensus 503 ~a~~~~~~m~~ 513 (655)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=1.9e-10 Score=104.74 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=129.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
+..+|..+...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777777777778888888877777643 356677888888888888888888888887753 2245566666677
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
+...++++.+...+....+. ...+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888999999888888753 2234667888888999999999999998886 3334 567899999999999999999
Q ss_pred HHHHHHHhccCCCC
Q 035659 471 EYACSHLLELEPEN 484 (655)
Q Consensus 471 ~~~~~~~~~~~p~~ 484 (655)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999865
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=6.2e-10 Score=110.70 Aligned_cols=211 Identities=9% Similarity=0.012 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 035659 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYT-------KCGNL-------DKALEVFHTVKS---R-DVFVWSTMIAGFAM 360 (655)
Q Consensus 299 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 360 (655)
++|..+|+++++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988864 567788888888876 35885 899999998754 2 56689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHH-hcCCHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNA-V-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLG-RAGLLD 436 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~-~~g~~~ 436 (655)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .| +...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 45653 3 7888888899999999999999999853 33 3444544433322 369999
Q ss_pred HHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 437 EAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLEL---EPE-NHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 437 ~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
+|.++|++. ... .+...|..++..+...|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999986 222 35789999999999999999999999999996 443 566888899999999999999999999
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88753
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=3.9e-10 Score=116.01 Aligned_cols=230 Identities=7% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--C----CC
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--I----KL 315 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~----~~ 315 (655)
....+...|+++ +|+..|++....-.-.+| ..++..+...+...|+++.|...+.+..+.- . +.
T Consensus 109 ~g~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYL------SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHH------HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 455667788866 999999998764111233 4578888889999999999999999988731 1 11
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CC
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEA----KV-KP 381 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p 381 (655)
...+++.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+. +. ..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245788899999999999999999988653 11 247888999999999999999999998762 33 33
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGL---LDEAVEFIEKMPIVPG-ASVW 454 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~ 454 (655)
...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ...+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4567888888999999999999999988754221122 2335678888889999 9999999999865444 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 455 GALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
..+...|...|++++|...+++++++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999998764
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=1.1e-08 Score=111.40 Aligned_cols=411 Identities=9% Similarity=0.031 Sum_probs=276.1
Q ss_pred CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC---chHHHHHHHHHHHhCC-CCChhH
Q 035659 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ---FRVGQAIHGMVIKSSF-EDDLFI 176 (655)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~ 176 (655)
.|..+|..+|..+.+.+..+.+..+|+++... .+.....|..-+..-.+.++ .+.+..+|+..+.... +|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 48889999999999999999999999999433 33455566677777777888 9999999999988741 488889
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHhhcC------CC-CeeHHHHHHHHHH---------hCCChhHHHHHHHHHH
Q 035659 177 SNSLIHFYAICGDL--------AMAYCVFVMIG------KK-DVVSWNSMISGFV---------QGGFFEKAIELYREME 232 (655)
Q Consensus 177 ~~~li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 232 (655)
|...+....+.++. +...++|+... .+ +...|...+.... ..++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877666554 33457777532 22 3467888887544 2345778889999988
Q ss_pred HCCCCCCHhhHHHHHHHHhccCcccc-------CCChHHHHHHHHHHHHC-CCCC---------------C-----C---
Q 035659 233 MENVKPDEVTMVAVLSACAKKRDLEF-------GRWPNEALSIFHELQLS-KNVN---------------P-----D--- 281 (655)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~~~~~~-------~~~~~~A~~l~~~m~~~-~~~~---------------p-----~--- 281 (655)
......-..+|......-...+.... ...++.|...+.++... .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112333222111111111000 00022344444443211 0011 1 1
Q ss_pred HHHHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhcCC---CChhH
Q 035659 282 EFTFVSVLSACAQLG-------AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL-EVFHTVKS---RDVFV 350 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~ 350 (655)
...|...+.---..+ ..+....+|++++.. ++-+..+|-..+..+.+.|+.++|. ++|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 122333333222211 123456778888876 3567888888888888899999996 99988653 35667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAK---------VKPN------------AVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
|-..+...-+.|+.++|.++|+++.... -.|+ ...|...+....+.|.++.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888889999999999999999998641 0132 235777777778889999999999999
Q ss_pred chhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---
Q 035659 410 EPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE--- 483 (655)
Q Consensus 410 ~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--- 483 (655)
.+. .-......|...+.+-.+.| +.+.|.++|+.. ....+...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 763 11223345554444444554 489999999886 22346678888888888899999999999999998873
Q ss_pred CcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567777777788999999999999998764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=6.8e-11 Score=117.39 Aligned_cols=248 Identities=9% Similarity=0.053 Sum_probs=142.4
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC--
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEME-------NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS-- 275 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~-- 275 (655)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|+++ +|+..|++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~------~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK------DAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHH
Confidence 346777888888888888888888887663 22334567888888999999976 999998887653
Q ss_pred ----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 276 ----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------GI-KLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 276 ----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
+..+....++..+...+...|++++|...+.++.+. +. +....++..+...|.+.|++++|.+.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211223556777888888888888888888887764 21 2234455666666666666666666665442
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc------CccC
Q 035659 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY------GVVP 417 (655)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p 417 (655)
+. +++... +..| ...++..+...+...|++++|..+++.+.+.. ...+
T Consensus 181 ~~------------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 181 EI------------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HH------------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HH------------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 11 000000 0011 12233444444445555555555554444210 0111
Q ss_pred Ccc-------hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 418 GVK-------HYTCMVDMLGRAGLLDEAVEFIEKMP-IVP-GASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 418 ~~~-------~y~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
... .+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 12222233344455555566666552 223 3567888999999999999999999999987764
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=4.6e-10 Score=101.76 Aligned_cols=157 Identities=17% Similarity=0.051 Sum_probs=89.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 433 (655)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3334444444444444444443321 113334444444445555555555555554432 1122344555555555566
Q ss_pred CHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 434 LLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 434 ~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
++++|.+.++++ . ...+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655554 1 12345666667777777777777777777777777777777777777777777777777777776
Q ss_pred Hh
Q 035659 512 RV 513 (655)
Q Consensus 512 ~~ 513 (655)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=2e-09 Score=110.46 Aligned_cols=226 Identities=9% Similarity=0.041 Sum_probs=117.5
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--C---C-Cc
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--I---K-LN 316 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~---~-~~ 316 (655)
...+...|+++ +|+..|++......-.+| ..++..+..++...|+++.|...+.+..+.. . . ..
T Consensus 108 g~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 108 GMYEFDQKEYV------EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHCCHH------HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 33455667755 888888777643211122 3456666777777778777777777766521 0 1 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEA----KVKPNA 383 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 383 (655)
..+++.+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 34566666677777777777766665432 11 234555566666666666666666665541 111124
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCh-hHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGL---LDEAVEFIEKMPIVPGA-SVWGA 456 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ 456 (655)
.++..+...+.+.|++++|..+++...+...-..+ ...+..+...|...|+ +++|+..+++.+..|+. ..+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 44555555566666666666666655443111111 1223333344444444 55555555554322221 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 035659 457 LLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+...|...|++++|...+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555544444
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=5.6e-10 Score=108.86 Aligned_cols=147 Identities=11% Similarity=0.022 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCCHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------GI-KLNCYLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A 336 (655)
+|++++.+..... .+....++..+...+...|++++|...+.++.+. +- +....++..+...|...|++++|
T Consensus 26 ~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 26 QALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 5555666554332 2234567788888889999999999999888764 22 23456778888888888888888
Q ss_pred HHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCc
Q 035659 337 LEVFHTVKSR-----------DVFVWSTMIAGFAMYGCGREALDLFSRMQEA------KVKP-NAVTFTNVLCACSHSGL 398 (655)
Q Consensus 337 ~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~ 398 (655)
.+.|++..+. ...+|..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 8887765321 2345555666666666666666666666543 1122 13345555555666666
Q ss_pred HHHHHHHHHHcch
Q 035659 399 VDEGRMFFNQMEP 411 (655)
Q Consensus 399 ~~~a~~~~~~~~~ 411 (655)
+++|..+++.+.+
T Consensus 185 ~~~A~~~~~~~l~ 197 (283)
T 3edt_B 185 YQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2.4e-09 Score=96.95 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
...+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 446677788888999999999999988753 56788888999999999999999999998753 33677788888889
Q ss_pred HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHH
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
...|++++|.++++.+.+. ...+...+..+...|...|++++|.+.+++. .. ..+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 2345678888999999999999999999886 22 235788999999999999999999
Q ss_pred HHHHHHhccCCCCcch
Q 035659 472 YACSHLLELEPENHGA 487 (655)
Q Consensus 472 ~~~~~~~~~~p~~~~~ 487 (655)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=1.4e-09 Score=102.71 Aligned_cols=205 Identities=9% Similarity=0.050 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMI 355 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 355 (655)
+.|...+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456788888888999999999999999999976436777777799999999999999999998753 3567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPN-A-------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTC 424 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~ 424 (655)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999884 343 3 3466777778889999999999999874 3554 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...|...|+. +++++ .+ ..+...+.... ....+.+++|...++++++++|++..+...+..+.
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777666543 22222 11 12333343333 34456789999999999999999987776665543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=1.4e-08 Score=103.74 Aligned_cols=262 Identities=10% Similarity=-0.003 Sum_probs=165.6
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHH
Q 035659 214 GFVQGGFFEKAIELYREMEMENVKPDEV----TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTF 285 (655)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~ 285 (655)
.+...|++++|...+++........+.. ++..+...+...|+++ +|...+++......-..+ ..++
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT------RSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444555555555555544432111111 2333344444555543 555555544321100111 2335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C------ChhH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQ----GIK--L-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R------DVFV 350 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 350 (655)
..+...+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66677788899999999999888763 221 2 345667788889999999999999887532 1 1346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHHccCcHHHHHHHHHHcchhcCccCC---cch
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFT-----NVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKH 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 421 (655)
|..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 777888899999999999999988754222211 1121 2233467899999999999988753 21111 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGA-SVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 567788899999999999988775 111122 2566667788899999999999999987653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.4e-08 Score=102.13 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=188.5
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--c
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGI---KL--N 316 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~---~~--~ 316 (655)
....+...|+++ +|...+++..... -..+.. .+..+...+...|+++.|.+.+.+..+... .+ .
T Consensus 20 ~a~~~~~~g~~~------~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 20 RAQVAINDGNPD------EAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334555678865 9999999987753 122222 456666778889999999999998876321 11 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-------R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK--P-- 381 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-- 381 (655)
..++..+...|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... +
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 23467788889999999999999887642 1 1245667788899999999999999998764222 1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT-----CMVDMLGRAGLLDEAVEFIEKM-PIVPG----- 450 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~----- 450 (655)
...++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 234677777888999999999999998865421111111222 2334577999999999999987 22221
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----C-cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPE-----N-HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...+..+...+...|++++|...++++++..+. + ...+..++.++...|+.++|...++....
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 235677788899999999999999999876432 1 13677789999999999999999988765
No 82
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=1.8e-09 Score=114.18 Aligned_cols=212 Identities=11% Similarity=-0.028 Sum_probs=153.5
Q ss_pred cHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197 (655)
Q Consensus 119 ~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 197 (655)
+++++..+... ... ...+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+...|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~-~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEV-LGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHH-HTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHH-hcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677777766 322 223566777777888889999 99999999998885 556788999999999999999999999
Q ss_pred hhcCC--CCeeHHHHHHHHHHhC---------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc--------Ccccc
Q 035659 198 VMIGK--KDVVSWNSMISGFVQG---------GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--------RDLEF 258 (655)
Q Consensus 198 ~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~~~ 258 (655)
++..+ |+..+|..+...|.+. |++++|++.|++..+.. +-+...|..+..++... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~- 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ- 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH-
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH-
Confidence 88754 6667888899999999 99999999999998764 23467788888777776 6654
Q ss_pred CCChHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 259 GRWPNEALSIFHELQLSKNVN---PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 259 ~~~~~~A~~l~~~m~~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
+|++.|++..... + -+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++...|++++
T Consensus 239 -----~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 239 -----QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -----HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 7888877777632 2 256666666677777777777777777766653 3344455555555665565555
Q ss_pred HHHHHhhc
Q 035659 336 ALEVFHTV 343 (655)
Q Consensus 336 A~~~~~~~ 343 (655)
|.+.+..+
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 55544433
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=2.2e-09 Score=101.38 Aligned_cols=187 Identities=12% Similarity=-0.030 Sum_probs=111.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVL 390 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 390 (655)
|+..+..+...|.+.|++++|...|+...+ ++...|..+...+...|++++|+..|++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666777777777777777766532 45555555666677777777777777776663 33 344556666
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC-c-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHHHHHH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG-V-------KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVWGALL 458 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 458 (655)
..+...|++++|...++...+. .|+ . ..|..+...+...|++++|++.|++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6667777777777777766643 232 2 34555666666666667766666664 44454 34555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..+. ..+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5553 334444555555555444333322 233445568899888887764
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=6.8e-09 Score=106.47 Aligned_cols=225 Identities=10% Similarity=0.005 Sum_probs=168.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC--CC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhHHH
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQG--IK---LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----R-----DVFVWS 352 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 352 (655)
....+...|++++|...+.++.+.- .. ....++..+...|...|+++.|...+++..+ . ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445678999999999999998642 11 1356788899999999999999888877542 1 145788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCCcchHHH
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPGVKHYTC 424 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~y~~ 424 (655)
.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...|++..+.. +......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988753 1111 13467778888999999999999999987621 11222567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM----PI--VPG-ASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+...|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 899999999999999999885 21 122 3445566666777788 77777777762 2224445677889999
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 035659 495 YAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 495 ~~~~g~~~~a~~~~~~m~~ 513 (655)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999987754
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=5.1e-09 Score=103.15 Aligned_cols=226 Identities=10% Similarity=0.021 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--C-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQL--G-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+|.+++.+..+. .++....| .++ +. + ++++|...+.++ ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~--~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKK--GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHH--SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHH--hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 566677776654 23322222 222 22 2 477777777665 34567788888888887
Q ss_pred hhcCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcc-CcHHHHHHH
Q 035659 341 HTVKSR-----D----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHS-GLVDEGRMF 405 (655)
Q Consensus 341 ~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~ 405 (655)
++..+- + ..+|+.+...|...|++++|+..|++..+.... .+ ..++..+...+... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 765421 1 457888888999999999999998887653111 01 35677888888886 999999999
Q ss_pred HHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---h-----hHHHHHHHHHHhcCCHHHHHH
Q 035659 406 FNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---A-----SVWGALLGACKIHENVELAEY 472 (655)
Q Consensus 406 ~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~ 472 (655)
|++..+.+.-..+ ..++..+...|.+.|++++|+..|++. ...|+ . ..|..+..++...|++++|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764211111 346888899999999999999999886 22222 1 156778888999999999999
Q ss_pred HHHHHhccCCCCcch-----HHHHHHHHH--hcCCchhHHHHHHHH
Q 035659 473 ACSHLLELEPENHGA-----LVLLSNIYA--KTGKWDNVSELRKHM 511 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 511 (655)
.+++.++++|..... +..++..|. ..+++++|.+.++.+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 999999999876543 344566664 456677777766443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=1.3e-08 Score=100.23 Aligned_cols=210 Identities=10% Similarity=-0.038 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GIKL-NCYLTTSLIDMYTKCGNLDKAL 337 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~ 337 (655)
++|...|.+. ...+...|++++|...+.+..+. |-++ ...+++.+..+|.+.|++++|.
T Consensus 34 ~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 34 EEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3777777665 34577889999999999988764 3222 2568999999999999999999
Q ss_pred HHHhhcCCC-----C----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHccCcHHHH
Q 035659 338 EVFHTVKSR-----D----VFVWSTMIAGFAMY-GCGREALDLFSRMQEAKVKP-N----AVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 338 ~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a 402 (655)
..|++..+- + ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999876531 2 35788999999996 99999999999987631110 1 35678888899999999999
Q ss_pred HHHHHHcchhcCccCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChh------HHHHHHHHHH--hcCCHH
Q 035659 403 RMFFNQMEPVYGVVPGVK-----HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGAS------VWGALLGACK--IHENVE 468 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~-----~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~ 468 (655)
...|+...+...-.+... .|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999886421112211 4677888899999999999999996 4455422 3445556664 457799
Q ss_pred HHHHHHHHHhccCCCCcchH
Q 035659 469 LAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~ 488 (655)
+|...++++.+++|.+...+
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHH
Confidence 99999999988888654333
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=3.4e-09 Score=116.90 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCA 392 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 392 (655)
...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44555555555555555555555555432 23455556666666666666666666666553 33 34556666666
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666542 343 456666666677777777777766664 33443 4566777777777777777
Q ss_pred HHHHHHHHhcc
Q 035659 470 AEYACSHLLEL 480 (655)
Q Consensus 470 a~~~~~~~~~~ 480 (655)
|.+.+++++++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776664
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=3.3e-08 Score=95.42 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=133.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D---VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN-AVTF 386 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 386 (655)
.+...+..+...+.+.|++++|...|+.+.+. + ...+..+...|.+.|++++|+..|++..+... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34556666677777777888887777776542 2 45666677777777777777777777776421 112 3345
Q ss_pred HHHHHHHHc--------cCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 387 TNVLCACSH--------SGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 387 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
..+..++.. .|++++|...|+.+.+. .|+. .....+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555556666 77777777777777654 3332 2222211111000000 1124667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhc----------CCchhHHHHHHHHHhCCCccCCceeE
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKT----------GKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
...+...|++++|+..++++++..|++. .++..++.+|... |++++|...++.+.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 7889999999999999999999998754 5788899999877 89999999999987742
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 035659 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560 (655)
Q Consensus 525 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 560 (655)
..+|...+....+.++..++.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1244455666666666666654
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=3e-08 Score=96.44 Aligned_cols=96 Identities=7% Similarity=-0.006 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------G-IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR------- 346 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 346 (655)
...++..+...+...|++++|.+.+.++.+. . .+....++..+...|...|++++|...|++..+.
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999999999999999999998875 1 1345678899999999999999999999886532
Q ss_pred ----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 347 ----DVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 347 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
...++..+...|...|++++|..+|++..+
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245788899999999999999999999876
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=2.2e-07 Score=90.03 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
+...+++.++.+ +++..+...+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 34444555677777778888888888777632 244566777788888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HccC--cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 035659 376 EAKVKP-----NAVTFTNVLCAC--SHSG--LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM- 445 (655)
Q Consensus 376 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m- 445 (655)
+ ..| +..+...++.++ ...| +..+|..+|+++.+. .|+......+..++.+.|++++|++.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 356 355556666552 2233 788888888888654 344233344444788888888888888764
Q ss_pred CC----------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 446 PI----------VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 446 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.. .| |+.+...++......|+ +|.++++++.+..|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 11 13 45666566666666676 8889999999999987643
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.87 E-value=3.6e-08 Score=95.15 Aligned_cols=203 Identities=12% Similarity=0.042 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C----Chh
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKS--R----DVF 349 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~ 349 (655)
+.+...+-.....+.+.|++++|...++.+++.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888999999999999999999864 223 67788899999999999999999998764 2 234
Q ss_pred HHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 350 VWSTMIAGFAM--------YGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 350 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
.+..+...+.. .|++++|+..|++.... .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999885 34432 21111 111111100 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIH----------ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556778888999999999988876 22233 34677777777755 899999999999999999885
Q ss_pred c---hHHHHHHHHHhcCCchh
Q 035659 486 G---ALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 486 ~---~~~~l~~~~~~~g~~~~ 503 (655)
. ++..+..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34445555554444433
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=3.6e-08 Score=83.57 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 34455555555555555555555555432 123344444444444455555555555444332 1
Q ss_pred HhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
..+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHh
Q 035659 510 HMRV 513 (655)
Q Consensus 510 ~m~~ 513 (655)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2e-07 Score=87.71 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS--RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV----TF 386 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 386 (655)
...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34555667778888888888888888753 22 2467777888888888888888888888743 3321 33
Q ss_pred HHHHHHHHc------------------cCcHHHHHHHHHHcchhcCccCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 035659 387 TNVLCACSH------------------SGLVDEGRMFFNQMEPVYGVVPGVK-HYTCMVDMLGRAGLLDEAVEFIEKMPI 447 (655)
Q Consensus 387 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~ 447 (655)
..+..++.. .|+.++|...|+.+.+. .|+.. .+..... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333432 35566666666666543 23321 1111110 00000000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999999875 5688999999999999999999999888654
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.1e-07 Score=93.11 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=138.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 333 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
.+...+.+......+...+..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344555555555555667777888888999999999999999885 34 566777888889999999999999999875
Q ss_pred hcCccCCcchHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cc
Q 035659 412 VYGVVPGVKHYTCMV-DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN--HG 486 (655)
Q Consensus 412 ~~~~~p~~~~y~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 486 (655)
. .|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 56544333222 3366778888888888775 3334 57889999999999999999999999999999988 78
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
++..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999998887654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=8e-08 Score=81.42 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
.+..+...|...|++++|.++|+++.+ .+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 577889999999999999999998753 467788999999999999999999999998864 3356667777778888
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|++++|.++++.+.+. ...+...+..+...|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888877653 112234444455555555555555554444
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=2.6e-08 Score=110.20 Aligned_cols=168 Identities=13% Similarity=-0.018 Sum_probs=117.6
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 328 TKCGNLDKALEVFHTVK-----------SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777777665 2355667777777777788888888887777642 22456666677777777
Q ss_pred CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
|++++|...|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888777643 44 35667777777888888877 7777765 3333 456777777888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
++++++++|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888777777777777766554
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=5.3e-09 Score=91.55 Aligned_cols=135 Identities=9% Similarity=-0.033 Sum_probs=79.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A 438 (655)
.|+.++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 34455555555554431 221 233344555556666666666666665532 33 345566666666666666666
Q ss_pred HHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 439 VEFIEKM-PIVP-GASVWGALLGACKIHENVELAEY-ACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 439 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
+..|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666654 3334 35667777777777777765544 4577777788777777777777766664
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.74 E-value=2.4e-07 Score=89.77 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=134.5
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 336 ALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 336 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
|...|++..+ ++..++..+..++...|+.++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5667776553 455566788889999999999999999987765322 456677788889999999999999999975
Q ss_pred hcCccC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-
Q 035659 412 VYGVVP-----GVKHYTCMVDM--LGRAG--LLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLEL- 480 (655)
Q Consensus 412 ~~~~~p-----~~~~y~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 480 (655)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 34555555555 33334 999999999998 33455334445555889999999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 481 ---------EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 481 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|+++.++..++......|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888887 899999998884
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=1.4e-07 Score=84.80 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=96.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH-HHh
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM-LGR 431 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~-~~~ 431 (655)
.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.+. .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 33444555555555555555554421 113344555555555666666666666655432 2222222111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCchhHHHH
Q 035659 432 AGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN--HGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|.. ...+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223355555554 2334 47788889999999999999999999999999865 55889999999999999999998
Q ss_pred HHHHHh
Q 035659 508 RKHMRV 513 (655)
Q Consensus 508 ~~~m~~ 513 (655)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.71 E-value=3.1e-08 Score=86.63 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=101.8
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV 467 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 467 (655)
..+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 445667899999999998864 3443 566778999999999999999999986 4445 578999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH-HHHHHh
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL-RKHMRV 513 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 513 (655)
++|+..++++++++|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 466655
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=4.9e-07 Score=84.07 Aligned_cols=161 Identities=8% Similarity=-0.075 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----cHHHHHHHHHHcchhcCccCCcchH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG----LVDEGRMFFNQMEPVYGVVPGVKHY 422 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~y 422 (655)
+..++..+...|...++.++|+++|++..+.| +...+..+...+.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45555556666666666666666666666654 44555555555555 5 677777777776542 244556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 423 TCMVDMLGR----AGLLDEAVEFIEKM-PIVPG---ASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 423 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 67777888777775 33332 6777777777777 77888888888888877 556677888
Q ss_pred HHHHHHhc-C-----CchhHHHHHHHHHhCCC
Q 035659 491 LSNIYAKT-G-----KWDNVSELRKHMRVSGL 516 (655)
Q Consensus 491 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 516 (655)
|+.+|... | ++++|.+.++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888764 3 78888888888777664
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=4.5e-07 Score=89.77 Aligned_cols=194 Identities=13% Similarity=0.054 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----D----VFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~ 365 (655)
.++++.|...|.++ ...|...|++++|...|.+..+- + ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666555543 45677778888888777765421 1 347888888899999999
Q ss_pred HHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHH
Q 035659 366 EALDLFSRMQEAKV---KPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 366 ~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~ 436 (655)
+|+..|++..+.-. .|. ..++..+...+.. |++++|+..|++..+.+.-..+ ...+..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999988765311 121 3567777778888 9999999999988754211111 457888899999999999
Q ss_pred HHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHHhcCCchh
Q 035659 437 EAVEFIEKM-PI---VPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA-----LVLLSNIYAKTGKWDN 503 (655)
Q Consensus 437 ~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~ 503 (655)
+|++.|++. .+ .++ ...+..++..+...|++++|...+++++ +.|..... ...++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999876 11 112 2356667777888899999999999999 88865432 33455555 5677665
Q ss_pred HHH
Q 035659 504 VSE 506 (655)
Q Consensus 504 a~~ 506 (655)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=3.6e-07 Score=101.07 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=149.4
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 035659 293 AQLGAMDIGVQIHAKMK--------KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMY 361 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 361 (655)
...|++++|.+.++++. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 45677889999999999999999999998764 4678999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~ 439 (655)
|++++|++.|++..+. .| +...+..+..++...|++++ .+.|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999985 34 56778888889999999999 9999998853 45 4678899999999999999999
Q ss_pred HHHHhC-CCCCC-hhHHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCcch
Q 035659 440 EFIEKM-PIVPG-ASVWGALLGACKIHEN-----VELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 440 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 487 (655)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.+..+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999997 56676 5677777777766555 344444555555555444443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=2e-07 Score=101.14 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=124.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 357789999999999999999999999998853 235678888889999999999999999
Q ss_pred HHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 035659 407 NQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH---ENVELAEYACSHLLEL 480 (655)
Q Consensus 407 ~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 480 (655)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999864 34 4678899999999999999999999986 3334 567889999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 035659 481 EPENHGALVLLS 492 (655)
Q Consensus 481 ~p~~~~~~~~l~ 492 (655)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=3.1e-05 Score=81.71 Aligned_cols=360 Identities=8% Similarity=-0.018 Sum_probs=176.6
Q ss_pred ChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCC-cHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHH----ccCCchHH
Q 035659 87 SLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAA----RLVQFRVG 158 (655)
Q Consensus 87 ~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~----~~~~~~~a 158 (655)
+++.|+.+|++.. .|++..|..-+.-..+.+. .+....+|+..+..-|..| +...|...+..+. ..++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 7888888888755 3777788877776655553 3456667777644445433 3344444444332 23456778
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 035659 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238 (655)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (655)
..+++.++......-...|......-.. .....+.++..+ .. +.+..|..+++++...--..
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~---------------~~--~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD---------------TL--PIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH---------------HH--HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH---------------Hh--HHHHHHHHHHHHHHHHHhhc
Confidence 8888888764211111222222221111 112222222211 11 12333444444333210001
Q ss_pred CHhhHHHHHHHHhccC-ccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 035659 239 DEVTMVAVLSACAKKR-DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~-~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 317 (655)
+...|...+.--...+ ..+.....+.+..+|+++... .+.+...|...+.-+.+.|+++.|..++++.++. +.+.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 2234444333322211 010000012466788888764 3555677777777778889999999999999987 4444
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHhhcC--C----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 035659 318 YLTTSLIDMYTKCGNLDKA-LEVFHTVK--S----------RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A-~~~~~~~~--~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 384 (655)
..+.. |+...+.++. ..+.+... . .....|...+....+.+..+.|..+|++. .. ...+..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 33332 2222111111 11111110 0 01134555555555556666677777666 21 112333
Q ss_pred HHHHHHHH-HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 035659 385 TFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463 (655)
Q Consensus 385 t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 463 (655)
.|...... +...++.+.|..+|+...+.++- ++..+...++...+.|+.+.|..+|++.. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33221111 11122466677777666654322 12334455565566666666666666652 245556666655555
Q ss_pred cCCHHHHHHHHHHHh
Q 035659 464 HENVELAEYACSHLL 478 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~ 478 (655)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666655555554
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=1.8e-05 Score=77.31 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc---CC
Q 035659 263 NEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLG--AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY----TKC---GN 332 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~ 332 (655)
++|++++.++... .|+ ...|+.--.++...+ +++++.+.++.++... +-+..+|+.-...+ .+. ++
T Consensus 50 ~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3677777777663 344 445666666666666 7888888888777764 34455555544444 444 67
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc------HHH
Q 035659 333 LDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL------VDE 401 (655)
Q Consensus 333 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 401 (655)
++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|..-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 7777777777653 45667777766777777777 788888888775432 55566555555555554 666
Q ss_pred HHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE-AVEFIEKM-PI----VPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
+++.++.+... ..-|...|+.+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 66666666542 12345556666666666665333 34455543 11 1244566666666666666666666666
Q ss_pred HHhc-cCCCCcchHH
Q 035659 476 HLLE-LEPENHGALV 489 (655)
Q Consensus 476 ~~~~-~~p~~~~~~~ 489 (655)
.+.+ .+|.....|.
T Consensus 283 ~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 283 LLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHTTCGGGHHHHH
T ss_pred HHHhccChHHHHHHH
Confidence 6664 5665544444
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=4.8e-07 Score=98.16 Aligned_cols=146 Identities=9% Similarity=-0.058 Sum_probs=104.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLF 371 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (655)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888999998887754 44577888889999999999999999988754 35678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 035659 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA---GLLDEAVEFIEKM 445 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~---g~~~~A~~~~~~m 445 (655)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .| +...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988753 235677888888899999999999999988754 34 466788888888888 9999999988876
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=4.9e-06 Score=81.33 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CC
Q 035659 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG--NLDKALEVFHTVKS---RDVFVWSTMIAGF----AMY---GC 363 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 363 (655)
..-++|.++.+.++..+ +-+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999876 456778888888888888 99999999998864 4566777766665 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH--HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC------H
Q 035659 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD--EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL------L 435 (655)
Q Consensus 364 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~------~ 435 (655)
+++++++++++.+.. +-|...|..-.-.+.+.|.++ +++++++.+.+. -.-|-..|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999864 337778877777778888888 999999999864 23355667666666777776 8
Q ss_pred HHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCH-HHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 436 DEAVEFIEKM-PIV-PGASVWGALLGACKIHENV-ELAEYACSHLLELE---PENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 436 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
+++++.++++ ... -|...|+.+...+.+.|+. +....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998876 223 3689999999999888874 44667888888876 8888999999999999999999999999
Q ss_pred HHHh
Q 035659 510 HMRV 513 (655)
Q Consensus 510 ~m~~ 513 (655)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=2.2e-07 Score=80.89 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=88.0
Q ss_pred CccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 414 GVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 414 ~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 556777888888999999999999886 3344 57889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=1.3e-06 Score=85.86 Aligned_cols=164 Identities=7% Similarity=-0.040 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cc
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-----VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VK 420 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 420 (655)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888888777664322111 12333445567778899998888877643111112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------Cc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-----ASVWGALLGACKIHENVELAEYACSHLLELEPE------NH 485 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 485 (655)
.|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999998888775 11222 258888999999999999999999999886422 14
Q ss_pred chHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 035659 486 GALVLLSNIYAKTGKWDNV-SELRKHMRV 513 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 513 (655)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 776776543
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=1.8e-06 Score=84.54 Aligned_cols=165 Identities=9% Similarity=-0.012 Sum_probs=115.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH-HHHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFV-WSTM 354 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l 354 (655)
.+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|+++.. |+... +...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34445667777778888899999999999888865 45677888888889999999999999988865 33222 2222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
...+.+.++.++|+..|++..... +.+...+..+...+...|++++|...|..+.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 233566777777888888877742 2345667777777888888888888888877541111124567777777777777
Q ss_pred HHHHHHHHHh
Q 035659 435 LDEAVEFIEK 444 (655)
Q Consensus 435 ~~~A~~~~~~ 444 (655)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777666654
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=9.7e-07 Score=81.87 Aligned_cols=125 Identities=14% Similarity=-0.013 Sum_probs=101.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHh
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKI 463 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 463 (655)
+..+...+...|++++|...|+... .|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556677788888888887763 456677888888888888888888888775 2223 56788888999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 464 HENVELAEYACSHLLELEPENH----------------GALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|++++|...++++++..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 889999999999999999999999988753
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.58 E-value=1.1e-06 Score=82.63 Aligned_cols=184 Identities=13% Similarity=0.034 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK-L-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RD-V---FVWST 353 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 353 (655)
...+..+...+.+.|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677889999999999999999986421 1 245788889999999999999999999764 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 354 MIAGFAM------------------YGCGREALDLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 354 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
+...+.. .|+.++|+..|+++.+. .|+... ..... +.+. +...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~------~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVF------LKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHH------HHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHH------HHHHHH----
Confidence 5555554 57899999999999984 455432 21111 1000 111110
Q ss_pred ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 415 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235677889999999999999886 333442 56888899999999999999999999988887653
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=6.4e-07 Score=83.01 Aligned_cols=176 Identities=7% Similarity=-0.032 Sum_probs=112.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 365 (655)
.....+...|++++|...+.++++.. |+ ...+... ..... .......++.+...|.+.|+++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCHH
Confidence 34445566777777777777776643 22 2222110 00000 0001122334777888888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCC--HHHHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGL--LDEAVEFI 442 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~--~~~A~~~~ 442 (655)
+|+..|++..+.. +-+...+..+..++...|++++|...|+.+.+. .|+ ...|..+...|...|. .+.+...+
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999998888753 225677778888888899999999999888753 454 6677778777766554 34455666
Q ss_pred HhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 443 EKMPIVPGA--SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 443 ~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 148 ~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5552 3443 345556666777899999999999999999953
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=2.2e-07 Score=80.83 Aligned_cols=96 Identities=7% Similarity=-0.031 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456677788888999999999999876 3334 67888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=4.2e-06 Score=82.07 Aligned_cols=160 Identities=8% Similarity=-0.025 Sum_probs=114.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKV-KPNAV----TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTC 424 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~ 424 (655)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776321 22211 2234555566777888888888888753111222 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-----PI---VPG-ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALV 489 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 489 (655)
+...|...|++++|+..++++ .. .+. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888999998888888775 11 111 3478889999999999999999999999865322 56889
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHh
Q 035659 490 LLSNIYAKTGK-WDNVSELRKHMRV 513 (655)
Q Consensus 490 ~l~~~~~~~g~-~~~a~~~~~~m~~ 513 (655)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998887654
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=3.4e-07 Score=77.09 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=54.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+..+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555556666666666665553 2222 345555666666666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 035659 498 TGKWDNVSELRKHMRV 513 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~ 513 (655)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666665544
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=3.1e-06 Score=78.31 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+++|+..|++.... .|+.. .+.. . ... ..........+.+...|.+.|++++|...|
T Consensus 20 ~~~A~~~~~~al~~---~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 20 NGQAVSYFRQTIAL---NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78999999988763 45432 2222 0 000 000112233445666777777777777777
Q ss_pred hhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCc--HHHHHHHHHHcchhcC
Q 035659 341 HTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGL--VDEGRMFFNQMEPVYG 414 (655)
Q Consensus 341 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~ 414 (655)
++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+..++...|. .+.+...+.... .
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~ 152 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---S 152 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---C
Confidence 76542 35667777777777777777777777777774 34 35556666655554443 333444444432 1
Q ss_pred ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 415 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
..|....+..+..++...|++++|...|++. ...|+......+
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 1222223333455566677788888888774 566765544433
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=8e-07 Score=79.85 Aligned_cols=155 Identities=11% Similarity=-0.002 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-CSH 395 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 395 (655)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44555666677777777777777654 355667777777777777777777777766532 333222211111 111
Q ss_pred cCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHhcCCHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 470 (655)
.+...+|...++...+. .|+ ...+..+...|...|++++|...|+++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223456667666643 443 667777778888888888888888775 44443 45777788888888888888
Q ss_pred HHHHHHHhc
Q 035659 471 EYACSHLLE 479 (655)
Q Consensus 471 ~~~~~~~~~ 479 (655)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=2.4e-06 Score=79.29 Aligned_cols=159 Identities=10% Similarity=-0.130 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMYG----CGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
+..+..|..+|...+++++|.+.|++..+ .+...+..+...|.. + +.++|+++|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444455555555555555555554432 234445555555544 4 6667777777766654 4555556666
Q ss_pred HHHc----cCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCChhHHHHHHH
Q 035659 392 ACSH----SGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGR----AGLLDEAVEFIEKM-PIVPGASVWGALLG 459 (655)
Q Consensus 392 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 459 (655)
.+.. .+++++|..+|+...+. .|. +..+..|..+|.. .+++++|..+|++. ...++...+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6655 67788888888777643 232 5667777777777 77788888888776 22245566777777
Q ss_pred HHHhc-C-----CHHHHHHHHHHHhccCC
Q 035659 460 ACKIH-E-----NVELAEYACSHLLELEP 482 (655)
Q Consensus 460 ~~~~~-g-----~~~~a~~~~~~~~~~~p 482 (655)
.|... | +.++|...++++.+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76543 2 78888888888887764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=2.8e-06 Score=78.67 Aligned_cols=145 Identities=13% Similarity=0.000 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 399 (655)
+..+...|.+.|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44455566666666666666666665566666666666666666666666666665532 22344555555556666666
Q ss_pred HHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-ASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
++|...|+...+. .|+..... +...| +...|+ ...|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666655542 11110000 00000 012222 3678888888999999999999999999
Q ss_pred ccCCCC
Q 035659 479 ELEPEN 484 (655)
Q Consensus 479 ~~~p~~ 484 (655)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999865
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=1e-06 Score=74.18 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
..+......+.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44556667777888888888888877653 34 4667778888888888888888888775 3334 46789999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+...|++++|+..|+++++++|++..++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999998888777654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=4.6e-07 Score=88.44 Aligned_cols=190 Identities=11% Similarity=-0.038 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
..+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555554431 244555666666666666666666666665532 123455566666667
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
..|++++|...|+...+. .|+ ...+...+....+......... .......++..+...+. .+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHH
Confidence 777777777777666543 221 1111112222211111111111 22222333444444443 33 26888999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKT-GKWDNVSELRKHMRVS 514 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 514 (655)
++++++.+|++......+...+.+. +++++|.++|....+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998877777777777766 7788999999887653
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=1.5e-06 Score=76.68 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=92.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+...+. ...+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566667777777777766543 1223556677777777778888887777765 2223 4678888888999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHH--HHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLS--NIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..|++++|...++++++..|.+...+..+. ..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888775444 447888999999999887654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=1.5e-06 Score=72.22 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGA 460 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 460 (655)
...+..+...+...|++++|.++++.+.+. ...+...+..+...|.+.|++++|..+++++ .. ..+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344555556666667777777766666543 1223456666777777777777777777665 21 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
+...|++++|...++++++..|.+...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999988888888887776544
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.6e-06 Score=74.63 Aligned_cols=96 Identities=13% Similarity=-0.029 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998876 3334 57788899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=1.9e-06 Score=72.36 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
...+..+...+...|++++|...|+...+. ...+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555566666677777777777776643 1224556667777777778888877777765 2223 46788888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
+...|++++|...++++++..|.+...+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999899999999998888763
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=3.9e-05 Score=80.94 Aligned_cols=368 Identities=8% Similarity=-0.086 Sum_probs=209.4
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC-chHHHHHHHHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-FRVGQAIHGMVI 166 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~ 166 (655)
++.|+.+|++... .+-. |+++.+..+|++. .. ..|+...|..-++-..+.++ .+....+|+.++
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~ifera-l~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRC-LK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHH-ST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHH-hc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6667776666532 1111 7788999999888 33 24788888877777666653 345677778777
Q ss_pred Hh-CC-CCChhHHHHHHHHHH----hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHH---hCCChhHHHHHHHHHHHCCCC
Q 035659 167 KS-SF-EDDLFISNSLIHFYA----ICGDLAMAYCVFVMIGKKDVVSWNSMISGFV---QGGFFEKAIELYREMEMENVK 237 (655)
Q Consensus 167 ~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~ 237 (655)
.. |. ..+..+|...+..+. ..|+++.++++|++...--...+..+-..|. +......+.+++.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~----- 150 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL----- 150 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-----
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-----
Confidence 64 43 335667777776654 2356778888887765411111111111111 1111222222222211
Q ss_pred CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--C-----CHHHHHHHHHHHHH
Q 035659 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL--G-----AMDIGVQIHAKMKK 310 (655)
Q Consensus 238 p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g-----~~~~a~~~~~~~~~ 310 (655)
+. +..|..+++++...- -..+...|...+.--... + ..+.+..+|++++.
T Consensus 151 ----------------~~------y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 151 ----------------PI------FQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp ----------------HH------HHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HH------HHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 01 113343444333210 001223444433332211 1 13456788998887
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------C
Q 035659 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK---------V 379 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~ 379 (655)
.. +.+..+|...+..+.+.|+.+.|..+|++... | +...|. .|+...+.++. ++.+.+.- .
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 64 56678888888889999999999999987543 2 222232 23332222222 22222210 0
Q ss_pred CC---CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCChhH
Q 035659 380 KP---NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM--PIVPGASV 453 (655)
Q Consensus 380 ~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~ 453 (655)
.+ ....|...+....+.+.++.|..+|+.+ .. . ..+...|......-.+.| +.+.|..+|+.. ....++..
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 11 1244566666666778899999999998 32 1 123344443333333334 699999999875 22223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|...+.-....|+.+.|..+|+++. .....+...+..-...|+.+.+.++++++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777887788999999999999983 3445666666666778999999998887764
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.44 E-value=7.1e-07 Score=88.38 Aligned_cols=197 Identities=11% Similarity=0.011 Sum_probs=147.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
..|++++|.+++++..+..- .. .+...+++++|...|... ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35677888888888776421 11 011158899998887653 5678899999999999998
Q ss_pred HHHcCC---CC--CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 374 MQEAKV---KP--NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 374 m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
..+... .+ -..+|..+...|...|++++|...|++..+.+.-..+ ..++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 865311 11 1347788888899999999999999987654211111 3577888889988 999999999987
Q ss_pred C-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchhHHHHHHH
Q 035659 445 M-PI---VPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENH------GALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 445 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
. .+ ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11 111 46788889999999999999999999999865443 2667778888899999999999998
Q ss_pred HH
Q 035659 511 MR 512 (655)
Q Consensus 511 m~ 512 (655)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.41 E-value=3.5e-05 Score=75.41 Aligned_cols=196 Identities=9% Similarity=-0.063 Sum_probs=136.5
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C
Q 035659 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY---LTTSLIDMYTKCGNLDKALEVFHTVKSR-----D 347 (655)
Q Consensus 276 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 347 (655)
|...|+..++..+...+.-.-+ .+.......+.. .+...+..+.+.|++++|.+.+++..+. +
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~ 110 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH
Confidence 3367887777777766543211 111211122222 2333467788899999999999987542 1
Q ss_pred ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc---
Q 035659 348 ----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV--- 415 (655)
Q Consensus 348 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--- 415 (655)
...+..+...+...|++++|+..|++....... ++ ..+++.+...+...|++++|..+|+.+.+...-
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 190 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 113334666677778999999999999874322 22 236888888999999999999999998753211
Q ss_pred -cCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHhcc
Q 035659 416 -VPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG-ASVWGALLGACKIHE-NVELAEYACSHLLEL 480 (655)
Q Consensus 416 -~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 480 (655)
.+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...| ++++|...+++++++
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 111 347888999999999999999998875 11222 568888999999999 469999999998864
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=1.5e-06 Score=82.92 Aligned_cols=192 Identities=9% Similarity=-0.083 Sum_probs=123.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHhhcCCC---------C----------
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSL-------IDMYTKCGNLDKALEVFHTVKSR---------D---------- 347 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~---------~---------- 347 (655)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-..- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5688888888888888865 4445666666 34444444444444444433321 1
Q ss_pred -----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cc
Q 035659 348 -----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VK 420 (655)
Q Consensus 348 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 420 (655)
...+-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 112344566777788888888888877764 354444444555677888888888888755431 1 111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
.+..+..++.+.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5667777888888888888888876 22143 236667777788888888888888888888886 5444443
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=1.1e-06 Score=88.19 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=80.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+..++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57778888888889999998888876 3334 577899999999999999999999999999999999999999999999
Q ss_pred cCCchhH-HHHHHHHH
Q 035659 498 TGKWDNV-SELRKHMR 512 (655)
Q Consensus 498 ~g~~~~a-~~~~~~m~ 512 (655)
.|++++| .+.++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998 44666654
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=2e-06 Score=72.63 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|...|+...+. .| +...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344445555555556666666655555432 22 3445555666666666666666666554 2222 4567777888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
.+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888776653
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=6.3e-06 Score=78.72 Aligned_cols=182 Identities=9% Similarity=-0.020 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCH---------------
Q 035659 329 KCGNLDKALEVFHTVKS---RDVFVWSTM-------IAGFAMYGCGREALDLFSRMQEAKVKPNA--------------- 383 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 383 (655)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999874 345688888 4666666666777766666554 23321
Q ss_pred -------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCh----h
Q 035659 384 -------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA----S 452 (655)
Q Consensus 384 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 452 (655)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234556788899999999999998753 354336666777899999999999999877433433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELE--PE-NHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++..+..++...|++++|+..|+++.... |. .......++.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78888999999999999999999998543 44 44578889999999999999999999998853
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=1e-05 Score=79.32 Aligned_cols=163 Identities=10% Similarity=-0.043 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--H
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS--R-D------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV---KPN--A 383 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 383 (655)
..+...+..+...|++++|.+.++...+ + . ...+..+...+...|++++|+..|++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788889999999888875432 1 1 12234455666778899999999998875321 112 3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDMLGRAGLLDEAVEFIEKM-P------IVPG- 450 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~------~~p~- 450 (655)
.++..+...|...|++++|..+|+++.+.....|+ ..+|..+...|.+.|++++|++.+++. . ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988743222233 257888899999999999999998875 1 1111
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 035659 451 ASVWGALLGACKIHENVELA-EYACSHLLEL 480 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 480 (655)
..+|..+...+...|++++| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888999999999999 7778887754
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.9e-06 Score=70.33 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=77.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+..+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566677778888888888888775 2233 567888888888899999999999999999999888899999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999988887663
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=2.5e-06 Score=71.10 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=83.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.+..++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667778889999999999999886 3344 578899999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=4.6e-06 Score=67.75 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPE--NHGALVLLSNI 494 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 494 (655)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 456677778888888888888888775 222 35678888888899999999999999999999998 88899999999
Q ss_pred HHhc-CCchhHHHHHHHHHhCC
Q 035659 495 YAKT-GKWDNVSELRKHMRVSG 515 (655)
Q Consensus 495 ~~~~-g~~~~a~~~~~~m~~~g 515 (655)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=5e-06 Score=76.13 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=66.3
Q ss_pred cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHH
Q 035659 330 CGNLDKALE---VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDE 401 (655)
Q Consensus 330 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~ 401 (655)
.|++++|.+ .+..-.......+..+...|...|++++|+..+++.... +..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 345555555 332222223344555555555555555555555554431 1111 12334444555556666666
Q ss_pred HHHHHHHcchhcCccC-C----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHH
Q 035659 402 GRMFFNQMEPVYGVVP-G----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVE 468 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p-~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~ 468 (655)
|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 6666555443211111 1 123444445555555555555555443 00011 122344444555555555
Q ss_pred HHHHHHHHHhc
Q 035659 469 LAEYACSHLLE 479 (655)
Q Consensus 469 ~a~~~~~~~~~ 479 (655)
+|...++++++
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1.8e-05 Score=72.40 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=103.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC------C---ChhHHHHHHHHHHHcCC
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS------R---DVFVWSTMIAGFAMYGC 363 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~g~ 363 (655)
...|++++|.++++.+.. .......++..+...|...|++++|...|++... . ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356778888885544433 2224566777888888888888888888877543 1 34567778888888899
Q ss_pred hHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcC
Q 035659 364 GREALDLFSRMQEA----KVKP--NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAG 433 (655)
Q Consensus 364 ~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g 433 (655)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ...+..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888877653 1121 1345667777888899999999999887653211122 234577888899999
Q ss_pred CHHHHHHHHHhC
Q 035659 434 LLDEAVEFIEKM 445 (655)
Q Consensus 434 ~~~~A~~~~~~m 445 (655)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888764
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=1.7e-06 Score=77.70 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=73.3
Q ss_pred ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH-HHhcCCH--HH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA-CKIHENV--EL 469 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 469 (655)
..|++++|...++...+. ...+...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555666666555432 1123455666666666666666666666654 1122 45566666666 6667776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...++++++.+|.+...+..++.+|...|++++|...++...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776664
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=7.3e-06 Score=69.66 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=81.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4567777788888888888888888775 2233 4678888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887764
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=5.4e-06 Score=73.27 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444455555555555555555543 2222 3455555555555666666666666666666665555666666666666
Q ss_pred CCchhHHHHHHHHHh
Q 035659 499 GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 g~~~~a~~~~~~m~~ 513 (655)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666665555544
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00046 Score=68.12 Aligned_cols=164 Identities=10% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-CHHHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC-G-NLDKALEVF 340 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 340 (655)
+|++++.++.... +-+...|+.--.++...| .++++.++++.++... +-+..+|+.-...+.+. + +.+++.+++
T Consensus 72 ~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 72 RALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 6666666666532 223444555555555566 4777777777777654 45566666666666555 5 677777777
Q ss_pred hhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-------HHHH
Q 035659 341 HTVKSR---DVFVWSTMIAGFAMYGCGR--------EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL-------VDEG 402 (655)
Q Consensus 341 ~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-------~~~a 402 (655)
+.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+. ++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 777653 4456665555555555444 77777777777532 255666666555555554 5566
Q ss_pred HHHHHHcchhcCccC-CcchHHHHHHHHHhcCC
Q 035659 403 RMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~ 434 (655)
+++++.+... .| |...|+.+-..+.+.|+
T Consensus 228 Le~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 228 LIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 6666655532 23 34445554444544443
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=9.2e-06 Score=67.30 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|.++++++ .. ..+..+|..+...+...|++++|...++++++..|.+...+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 457788889999999999999999886 22 2357789999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=8.1e-06 Score=74.73 Aligned_cols=170 Identities=9% Similarity=-0.054 Sum_probs=101.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
+......|+++++.+.|+.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33344456666666666543321 3445666677777778888888877777763 2221111000 000
Q ss_pred HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
.-. .. .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01246677777888888888888888775 2233 56788889999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchhHH-HHHHHHHhC
Q 035659 479 ELEPENHGALVLLSNIYAKTGKWDNVS-ELRKHMRVS 514 (655)
Q Consensus 479 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 514 (655)
+++|.+..++..+..++...|+.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888888776 455555443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=1.5e-05 Score=65.29 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+..... ...+...+..+...|.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1123445555555566666666666665554 2222 3556666667777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
..|++++|...++++++.+|.+...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666655555443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=9.8e-06 Score=66.39 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=86.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+...+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999986 2233 67888999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.18 E-value=1.4e-05 Score=69.39 Aligned_cols=104 Identities=7% Similarity=-0.017 Sum_probs=85.7
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHH
Q 035659 379 VKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVW 454 (655)
Q Consensus 379 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 454 (655)
+.|+ ...+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3443 345667777888999999999999998853 45 4678888999999999999999999886 3344 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998653
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=9.1e-05 Score=73.13 Aligned_cols=215 Identities=13% Similarity=0.093 Sum_probs=157.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-C-ChHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMY-G-CGREAL 368 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 368 (655)
.+..++|.++.+.++..+ +-+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344568899999999876 556778888888888888 59999999999864 4667888887777776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH--------HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC------
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD--------EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL------ 434 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~------ 434 (655)
++++++.+... -|...|..-.-.+.+.|..+ +++++++.+.+. ..-|...|+....++.+.++
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 99999998642 26677766555555555555 899999988864 23356677777777877776
Q ss_pred -HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 035659 435 -LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV--------------------ELAEYACSHLLELE------PENH 485 (655)
Q Consensus 435 -~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 485 (655)
++++++.++++ ...| |...|+.+-..+.+.|+. .....+...+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78888888775 3333 678998888888776654 23333333333332 4566
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7788899999999999999999999864
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=5.5e-06 Score=69.70 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=78.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG-------ALVL 490 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 490 (655)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667788888899999999988875 3344 4678889999999999999999999999998876643 6777
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988765
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.17 E-value=1.1e-05 Score=72.33 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=96.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH-HHhcCCH--
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM-LGRAGLL-- 435 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~-~~~~g~~-- 435 (655)
...|++++|+..|++..... +.+...+..+...+...|++++|...|+.+.+.. ..+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3356777788888888999999999998887541 2245677777777 7788998
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
++|...+++. ...| +...|..+...+...|++++|...++++++..|++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 467888899999999999999999999999999876543
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=9.9e-06 Score=68.16 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=87.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.+...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3567888889999999999999999986 4444 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.1e-05 Score=67.62 Aligned_cols=111 Identities=13% Similarity=-0.072 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWG 455 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 455 (655)
+...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344455555556666666666666666553 2344 455666666677777777777776654 2223 456777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
.+..++...|++++|...++++++.+|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777888888888888888888888887776666555543
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.16 E-value=0.0003 Score=69.12 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 263 NEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGA----------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
++|++++..+.. +.|+. ..|+.--..+...+. ++++..+++.+.... +-+..+|+.-.-.+.+.|
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 589999999987 44554 345543333333332 678888888888765 567778887777777777
Q ss_pred --CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---------
Q 035659 332 --NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGC-GREALDLFSRMQEAKVKPNAVTFTNVLCACSHS--------- 396 (655)
Q Consensus 332 --~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------- 396 (655)
.++++..+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+..+ -|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 48889888888764 467788887777778887 5889999999988643 3566666555444443
Q ss_pred -----CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCChhHHHHHH
Q 035659 397 -----GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA-----------GLLDEAVEFIEKM-PIVPGASVWGALL 458 (655)
Q Consensus 397 -----g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ll 458 (655)
+.++++++++...... .| |...|+-+-..+.+. +.++++++.++++ ...||. .|..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHH
Confidence 4577777777777643 34 355555554455444 3566777777665 445554 344322
Q ss_pred HHH-----HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 459 GAC-----KIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 459 ~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
.+. ...+..++....+.++++++|....-|..+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 221 234666777777778877777666555554443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=68.52 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=88.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|.+...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567788889999999999999999986 56677 678889999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 035659 493 NIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 157
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=4.7e-06 Score=72.32 Aligned_cols=103 Identities=10% Similarity=-0.059 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|++.|++. ...| +...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 344555666777888888888888877653 34 4667777788888888888888888775 3333 4678888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
++...|++++|+..+++++++.|+++...
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999988776553
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=2.1e-05 Score=69.43 Aligned_cols=107 Identities=14% Similarity=0.032 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445666666777777777777777777653 33 4567777888888888888888888775 3334 4778899999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
++...|++++|...++++++++|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665544
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.12 E-value=3.1e-05 Score=68.01 Aligned_cols=128 Identities=13% Similarity=-0.029 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+. ...+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666666777777777777666542 224556666666677777777777777776643 12235566677777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-ChhHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVP-GASVWGA--LLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
|.+.|++++|.+.+++. ...| +...+.. ++..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777665 2222 3334433 33336666777777777776554
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=1.5e-05 Score=77.60 Aligned_cols=96 Identities=10% Similarity=-0.014 Sum_probs=52.6
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~ 285 (655)
..|..+...+.+.|++++|+..|++..+.. +-+...|..+...+.+.|+++ +|+..+++..... +-+...+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~------~A~~~~~~al~~~--p~~~~~~ 75 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPE------QALADCRRALELD--GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH------HHHHHHHHHTTSC--TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHhC--CCCHHHH
Confidence 345555566666666666666666555432 113445555555555555544 5555555554432 2334455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~ 310 (655)
..+..++...|++++|...+.++.+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666666666666554
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2e-05 Score=65.94 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=73.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGAC 461 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 461 (655)
.+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555566667777777777666543 23 3556667777777777777777777665 2233 466788888888
Q ss_pred HhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 035659 462 KIHENVELAEYACSHLLELE------PENHGALVLLSNIY 495 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 495 (655)
...|++++|...++++++++ |.+......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77666666555443
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=1.3e-05 Score=68.83 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34445555677778888888888777653 34 4566777777888888888888888775 2233 45678888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
+...|++++|...+++++++.|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999988777655443
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=1e-05 Score=69.75 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLEL-------EPENHGAL----VLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..|..+..++...|++++|+..+++++++ +|++..+| +..+.++...|++++|.+.|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888899999999999999999988 99998899 9999999999999999999998766
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.08 E-value=1.9e-05 Score=66.00 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.+...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567788889999999999999999886 2233 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988774
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.7e-05 Score=66.56 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVPG-A---SVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNI 494 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 494 (655)
..+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566677777777766664 22232 2 366666677777777777777777777777776 5567777777
Q ss_pred HHhcCCchhHHHHHHHHHhC
Q 035659 495 YAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 495 ~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...|++++|.+.++.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776653
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1.9e-05 Score=83.15 Aligned_cols=116 Identities=9% Similarity=0.022 Sum_probs=92.3
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVE 468 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 468 (655)
.+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455678888888888887753 34 3677888888888888999988888876 3344 4678999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCchhHHHHHHH
Q 035659 469 LAEYACSHLLELEPENHGALVLLSNI--YAKTGKWDNVSELRKH 510 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 510 (655)
+|++.++++++.+|.+..++..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999998874
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=2.9e-05 Score=81.34 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446667777777777777777777777663 2221100 0 000000 000 01356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+..++..+..++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888876 3333 57789999999999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHhC
Q 035659 506 E-LRKHMRVS 514 (655)
Q Consensus 506 ~-~~~~m~~~ 514 (655)
+ .++.|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 4 45555443
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=5.4e-06 Score=68.54 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 432 AGLLDEAVEFIEKM-PI---VPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666664 33 132 45666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 035659 507 LRKHMRV 513 (655)
Q Consensus 507 ~~~~m~~ 513 (655)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.98 E-value=3.1e-05 Score=65.66 Aligned_cols=100 Identities=10% Similarity=-0.122 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
+...+..+...+...|++++|...|+...+. ...+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666677777777777777766643 1223556677777777777777777777665 2223 4667888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.98 E-value=4.4e-05 Score=67.12 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888889999999999999999999999999999999999999999999988887664
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.97 E-value=3e-05 Score=62.72 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---ChhHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP---GASVWGALLG 459 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 459 (655)
..+..+...+...|++++|...|+...+. ...+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666777777777777776643 1223556677777777888888888777765 2333 4677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHhccCCCCc
Q 035659 460 ACKIH-ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 460 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 899999999999988887654
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=2.4e-05 Score=65.42 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPEN-------HGALVL 490 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 490 (655)
..+..+...+...|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35666777788888888888888775 22 2356778888888999999999999999999987765 778889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988774
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.7e-05 Score=77.84 Aligned_cols=162 Identities=6% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCC-cch
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAV----TFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPG-VKH 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 421 (655)
+..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|..+++..++....... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666677777777777666654421 111211 11122222344567777777776654321 11111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCC----cc
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-----P--IVPG-ASVWGALLGACKIHENVELAEYACSHLLELE---PEN----HG 486 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 486 (655)
+..+...|...|++++|..++++. . -++. ..++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777888888888888777764 1 1122 3467777778888888888888888777653 221 23
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777888888877766554
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=4.3e-05 Score=80.44 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.+++..+.. +-+...+..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345556666666666665432 245566666666666666666666666666532 123455555556666666666
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDM--LGRAGLLDEAVEFIE 443 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~--~~~~g~~~~A~~~~~ 443 (655)
+|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543 222 2333333333 555566666666655
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=6e-05 Score=62.86 Aligned_cols=106 Identities=10% Similarity=-0.018 Sum_probs=57.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----hhHHHHHH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----P-IVPG----ASVWGALL 458 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ll 458 (655)
.+...+...|++++|..+|+...+. ...+...+..+...|...|++++|...+++. + ..++ ..+|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3334444444444444444444432 1112334444455555555555555555443 1 0112 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
..+...|++++|...++++++..| ++.....+..+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777788888888888888888777 4555555554443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.94 E-value=0.0012 Score=64.70 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=152.8
Q ss_pred ccCCH-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 035659 294 QLGAM-DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN----------LDKALEVFHTVKS---RDVFVWSTMIAGFA 359 (655)
Q Consensus 294 ~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 359 (655)
+.|.+ ++|.++.+.++..+ +-+..+|+.--..+...|. ++++..+++.+.. ++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 47888888888765 3445566654444444333 6788888887753 57788888888888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc----
Q 035659 360 MYGC--GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL-VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---- 432 (655)
Q Consensus 360 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---- 432 (655)
..++ +++++++++++.+... -|...|+.-...+...|. ++++++.++.+.+. ..-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 8999999999998643 377777777777777887 69999999999864 233566677666666655
Q ss_pred ----------CCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHH
Q 035659 433 ----------GLLDEAVEFIEKM-PIV-PGASVWGALLGACKIH-----------ENVELAEYACSHLLELEPENHGALV 489 (655)
Q Consensus 433 ----------g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 489 (655)
+.++++++.+++. ... -|...|+.+-..+... +.++++++.++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4588898888876 223 3678898776666555 4588999999999999998855544
Q ss_pred HHHHHHH---hcCCchhHHHHHHHHHh
Q 035659 490 LLSNIYA---KTGKWDNVSELRKHMRV 513 (655)
Q Consensus 490 ~l~~~~~---~~g~~~~a~~~~~~m~~ 513 (655)
.++.... ..|..++....+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4433222 35666777777777766
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=5e-05 Score=66.06 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCcc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEP------ENHG 486 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 486 (655)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555443 00011 34556666667777777777777777766421 1134
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667788888888888888888876654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00012 Score=61.20 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=67.5
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHH
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGV----KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLG 459 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 459 (655)
+...+...|++++|...|+.+.+. .|+. ..+..+...|.+.|++++|...+++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344556667777777777766643 2332 35666667777777777777777665 22233 456777788
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
++...|++++|...++++++..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888999999999999998888776554433
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=1e-05 Score=73.97 Aligned_cols=96 Identities=14% Similarity=-0.011 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-G----------------ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345566667777778888887777764 1112 1 268888999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 481 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|.+..++..++.+|...|++++|.+.++...+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00015 Score=60.71 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-------hhHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D-------VFVWST 353 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 353 (655)
.+..+...+.+.|++++|.+.|.++++.. +.+...|+.+..+|.+.|++++|++.|+...+. + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666677777777777666653 344556666666666666666666666654321 0 123444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+...+...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555566666666555554
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=9e-05 Score=77.55 Aligned_cols=124 Identities=9% Similarity=-0.010 Sum_probs=95.5
Q ss_pred HHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWG 455 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 455 (655)
.+..+|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567888888888777654321 1222 456888888999999999998888775 33455 46889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 456 ALLGACKIHENVELAEYACSHLLE-----LEPENHG---ALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|...|...|++++|+.+++++++ ++|+++. ....|..++...|++++|+.+++.++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 4676654 45578888889999999999999998754
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=6.7e-05 Score=76.01 Aligned_cols=137 Identities=9% Similarity=-0.027 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMV 426 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li 426 (655)
...|..+...+.+.|++++|+..|++..+. .++.. .....+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 456777788888888888888888877652 11100 000111 111 1122 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|.+...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 5555 4678899999999999999999999999999999999999999999988888777
Q ss_pred HH
Q 035659 505 SE 506 (655)
Q Consensus 505 ~~ 506 (655)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 183
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.84 E-value=0.00018 Score=71.82 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
.|..+..++.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|...|++..+ .+...+..+...+.+
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444432 23344444455555555555555555544321 233444445555555
Q ss_pred cCChHHH-HHHHHHH
Q 035659 361 YGCGREA-LDLFSRM 374 (655)
Q Consensus 361 ~g~~~~A-~~~~~~m 374 (655)
.|+.++| ..+|++|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 5555544 2344444
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=6e-05 Score=65.53 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-Chh
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVP-GAS 452 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 452 (655)
.+..+...+...|++++|..+++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554432111111 234555566666666666666666553 1011 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
++..+...+...|++++|...++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888877653
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=4.9e-05 Score=63.15 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=66.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
+..+...+.+.|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455666777777777777777643 34 4566777777777888888888777775 3334 4567788888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCc
Q 035659 463 IHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..|++++|+..++++++.+|.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888653
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=3e-05 Score=66.76 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hhHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-ASVW----GALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665553 33776 4688 899999999999999999999999999988665
Q ss_pred HH
Q 035659 488 LV 489 (655)
Q Consensus 488 ~~ 489 (655)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00041 Score=71.84 Aligned_cols=191 Identities=8% Similarity=-0.100 Sum_probs=133.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCc----------------hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----Ch
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLN----------------CYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DV 348 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~ 348 (655)
..+.+.|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+..+.+. +.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677899999999988887532211 123677888999999999999988876531 11
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-
Q 035659 349 ----FVWSTMIAGFAMYGCGREALDLFSRMQE----AKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG- 418 (655)
Q Consensus 349 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 418 (655)
...+.+...+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.....-..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233333344456888999988887754 233333 456677888899999999999999887653221111
Q ss_pred ---cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 ---VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG--ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...|..++..|...|++++|..++++. +..+. ...+..+...+...+++++|...+.++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 457888889999999999999988765 21111 245666667778889999999888888763
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=2.4e-05 Score=64.57 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=63.7
Q ss_pred cCcHHHHHHHHHHcchhcCc-cC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGV-VP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|++.|++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776642 10 12 3456777777788888888888888775 2233 4677888888888999999999
Q ss_pred HHHHHHhccCCCCcchHH
Q 035659 472 YACSHLLELEPENHGALV 489 (655)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~ 489 (655)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999988887765443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.00081 Score=72.06 Aligned_cols=167 Identities=9% Similarity=0.013 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--c
Q 035659 334 DKALEVFHTVKS---RDVFVWSTMIAGFAMYGC----------GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG--L 398 (655)
Q Consensus 334 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 398 (655)
++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +...|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 444555555432 234455555555555555 67788888888775422 5666766666677777 6
Q ss_pred HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc-----------
Q 035659 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM-PIVP-GASVWGALLGACKIH----------- 464 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 464 (655)
+++++++++.+.+. -.-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888753 1234556666666777777 788888888876 3334 567888777776653
Q ss_pred ---CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 465 ---ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 465 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
+.++++.+.++++++.+|.+..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=3.3e-05 Score=77.33 Aligned_cols=147 Identities=9% Similarity=-0.057 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777777788889999999999988773 455432 233444444433221 126778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCchhH
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA-KTGKWDNV 504 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 504 (655)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.+..++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 3334 57788999999999999999999999999999999888888887743 45667777
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777553
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=8.4e-05 Score=65.28 Aligned_cols=76 Identities=17% Similarity=0.021 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH-GALVLLSNI 494 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 494 (655)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++. .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457788888899999999999888875 3334 467889999999999999999999999999999887 444444433
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=6.7e-05 Score=60.72 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVL 490 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 490 (655)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456677788888889999998888875 3333 57788899999999999999999999999999988 777888
Q ss_pred HHHHHHhcCCchhHHHHHH
Q 035659 491 LSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~ 509 (655)
++.++...|++++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888888887765443
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00015 Score=57.70 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999987653
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=8.4e-05 Score=74.35 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998653221111 1112233333332221 13567777788888
Q ss_pred CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH-HHhcCCHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGA-CKIHENVELAEY 472 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 472 (655)
|++++|+..++...+. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 34 4677888888899999999999999886 45554 3455555544 344567788888
Q ss_pred HHHHHhccCCCCc
Q 035659 473 ACSHLLELEPENH 485 (655)
Q Consensus 473 ~~~~~~~~~p~~~ 485 (655)
.+.++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999998888654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00026 Score=54.73 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++++.+|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445667777788888888888888775 2223 56788888888999999999999999999999999888888888877
Q ss_pred hcC
Q 035659 497 KTG 499 (655)
Q Consensus 497 ~~g 499 (655)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00027 Score=73.90 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999999999999999999999999999998874
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00023 Score=58.14 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred HHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 437 EAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 437 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+...|..++.+|...|++++|...++...+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3334 46788888899999999999999999999999999999999999999999999999999887663
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.51 E-value=0.00038 Score=72.83 Aligned_cols=124 Identities=7% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHC-----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CCCchhhHHHHHHHHHhc
Q 035659 264 EALSIFHELQLS-----KNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-----G--IKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 264 ~A~~l~~~m~~~-----~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~ 330 (655)
+|+.++++.... |.-.|+ ..+++.+..+|...|++++|..+++++++. | .+....+++.|...|...
T Consensus 327 eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~ 406 (490)
T 3n71_A 327 EVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA 406 (490)
T ss_dssp HHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 666666554432 112233 447888888888889999998888877652 2 122345667777777777
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
|++++|+.+++ +|+++++.......+-...+...+-.++...+.+++|+..|..+.
T Consensus 407 G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 407 GHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp TCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777655 333444333322111112233344445556666677766666665
Q ss_pred h
Q 035659 411 P 411 (655)
Q Consensus 411 ~ 411 (655)
+
T Consensus 463 ~ 463 (490)
T 3n71_A 463 E 463 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.00044 Score=69.94 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP-GASVWGALLGAC 461 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 461 (655)
...+..+...+.+.|++++|...|++..+.. ++. ......+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456667777778888888888887776421 110 00011111111 122 357888999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+.|++++|+..++++++++|.+..+|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00011 Score=63.14 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 430 GRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHEN----------VELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4555666666666654 2233 45566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CchhHHHHHHHHHhC
Q 035659 498 TG-----------KWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g-----------~~~~a~~~~~~m~~~ 514 (655)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998874
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.0011 Score=51.68 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 449 PGASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+|+..|..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+.+.+..-
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888765555 69999999999999999999999999999999999999999999988643
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0007 Score=54.47 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56778889999999999999999999999999999999999999999999999999999998774
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.00057 Score=70.33 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---cchH
Q 035659 427 DMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWGALLGACKIHENVELAEYACSHLLEL-----EPEN---HGAL 488 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~ 488 (655)
..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345566777777666553 11122 357778888888888888888888888763 4444 3567
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 035659 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559 (655)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 559 (655)
+.|+.+|..+|++++|..++++..+--.. .=+..||...+++..+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998877652110 013468998888888888887776
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.0021 Score=54.42 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 035659 450 GASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK----TGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 450 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 515 (655)
+...+..|...|.. .+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33444444444444 44555555555555544 234455555555555 555555555555555544
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.06 E-value=0.0016 Score=50.05 Aligned_cols=64 Identities=28% Similarity=0.296 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+...+...|++++|+..++++++..|.+...+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678888899999999999999999999999999999999999999999999999999988764
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.04 E-value=0.00041 Score=59.58 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=44.1
Q ss_pred HHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 436 DEAVEFIEKM-PIVPG-ASVWGALLGACKIH-----------ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
++|+..|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++...... +. ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LE------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HH------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HH------HHH
Confidence 4555555554 33343 44566666666554 58999999999999999987432222 22 234
Q ss_pred hHHHHHHHHHhCC
Q 035659 503 NVSELRKHMRVSG 515 (655)
Q Consensus 503 ~a~~~~~~m~~~g 515 (655)
+|.+++-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.02 E-value=0.0079 Score=64.36 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCc----------HHHHHHHHHHcchhcCccCCcchHHHHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGL----------VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 430 (655)
...++|++.++++... .|+ ...|+.--.++.+.|+ ++++++.++.+.+. ..-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456889999999984 454 4456555555556666 89999999999864 2234567777777888
Q ss_pred hcC--CHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-------
Q 035659 431 RAG--LLDEAVEFIEKM-PIV-PGASVWGALLGACKIHE-NVELAEYACSHLLELEPENHGALVLLSNIYAKT------- 498 (655)
Q Consensus 431 ~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 498 (655)
+.| ++++|+++++++ ... .|...|+.-...+...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 789999999998 222 36789999888888889 899999999999999999999999999998874
Q ss_pred -------CCchhHHHHHHHHHh
Q 035659 499 -------GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 -------g~~~~a~~~~~~m~~ 513 (655)
++++++.+.++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 456788887776654
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.0031 Score=53.38 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDE 437 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~ 437 (655)
++.++|+++|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 34443 555677778888999999998764 456778888888888 889999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEP 482 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 482 (655)
|.++|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987323477888888888888 8999999999999998864
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.89 E-value=0.075 Score=43.24 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=105.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
+.-.|..++..++..+...+. +..-|+-+|.-....-+-+-..++++.+-+.+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 345678888888888887643 55566666666566666677777777775543332 4566666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
....+-.++ .+..-...-+......|+-+.-.++...++...+.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666654 244555677788889999999999999987777888999999999999999999999999999999975
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.87 E-value=0.0026 Score=51.64 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=51.7
Q ss_pred HHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 402 GRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555543 223 3556666667777777777777777664 2223 35677777778888888888888888888
Q ss_pred ccCCC
Q 035659 479 ELEPE 483 (655)
Q Consensus 479 ~~~p~ 483 (655)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0041 Score=63.80 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=61.1
Q ss_pred cCcHHHHHHHHHHcchhc--CccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHHHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVY--GVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWGALLG 459 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 459 (655)
.|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666654421 12222 356777777777888888877777664 23444 357788888
Q ss_pred HHHhcCCHHHHHHHHHHHhcc-----CCCCcch
Q 035659 460 ACKIHENVELAEYACSHLLEL-----EPENHGA 487 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 487 (655)
.|...|++++|+.+++++++. +|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888888888888888888773 5665543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.82 E-value=0.0072 Score=62.10 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=69.4
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhH
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASV 453 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 453 (655)
+..+...|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3345566777777777776654311 2222 356777788888888888888877765 33444 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcchHH
Q 035659 454 WGALLGACKIHENVELAEYACSHLLE-----LEPENHGALV 489 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 489 (655)
++.|...|...|++++|+.+++++++ ++|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999999887 3677665443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.73 E-value=0.0018 Score=66.47 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---cchHHHHHH
Q 035659 432 AGLLDEAVEFIEKM---------PIVPG-ASVWGALLGACKIHENVELAEYACSHLLEL-----EPEN---HGALVLLSN 493 (655)
Q Consensus 432 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 493 (655)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|++ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57888888888764 22344 468899999999999999999999999873 4554 457889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.66 E-value=0.029 Score=55.27 Aligned_cols=137 Identities=10% Similarity=-0.029 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc---cC-----cHHHHHHHHHHcch
Q 035659 346 RDVFVWSTMIAGFAM--YG---CGREALDLFSRMQEAKVKPNA-VTFTNVLCACSH---SG-----LVDEGRMFFNQMEP 411 (655)
Q Consensus 346 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~~~~ 411 (655)
.+...|...+.+... .+ ...+|..+|++..+ ..|+. ..+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355566665554332 22 24678888888887 45653 333333333320 00 00000111111100
Q ss_pred hcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 412 ~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
......+...|..+...+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011233445555544455556666666666554 233555555555555556666666666666666666543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.0095 Score=46.56 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVP-GAS-VWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888888888888876 3334 456 788888889999999999999999999999887766
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.0055 Score=47.99 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHG-ALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
....+...|++++|...++++++.+|.+.. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999988743
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.44 E-value=0.011 Score=46.60 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
...|..+...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555554432 1123344444445555555555555555444
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.33 E-value=2.9e-05 Score=77.70 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (655)
++.|.+.-++...|. .|..|-.+..+.++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+.+
T Consensus 41 ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333333333343343 3777777777777777776665333 2556667777777777777776666665554
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC-------------
Q 035659 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME------------- 234 (655)
Q Consensus 168 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------- 234 (655)
. ..+..+=+.|+-+|+|.+++.+-++++ ..||+.--..+.+-|...|.++.|.-+|..+...
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4 334455566777777777765543332 2245555555555555555555555555443211
Q ss_pred -------CCCCCHhhHHHHHHHHhccCccccC
Q 035659 235 -------NVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 235 -------g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
.-.-+..||-.+..+|...+.+..+
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 0124677898898899888887644
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.12 Score=57.98 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 365 (655)
..++..+.+.|.++.|.++.+.- ..-.......|+++.|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 56666677777777777655211 111344566789999988877664 4578888888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
.|.+.|.++.+ |..+...+...|+.+...++-+..... | -++.-...|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99998888754 334444455566666554444433321 1 2334444556666666666666665
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.99 E-value=0.041 Score=46.57 Aligned_cols=65 Identities=8% Similarity=-0.040 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 449 PGASVWGALLGACKIHE---NVELAEYACSHLLELE-P-ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | .+...++.|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666667777766 5557777777777777 5 3466777777778888888888888777766
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.86 E-value=0.082 Score=52.07 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHH--cc---CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHH----hcC-------CHHHHHHH
Q 035659 379 VKPNAVTFTNVLCACS--HS---GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLG----RAG-------LLDEAVEF 441 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~----~~g-------~~~~A~~~ 441 (655)
.+.+...|...+.+.. .. ....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4556777777776643 22 346889999999985 4676 334443333332 111 11223332
Q ss_pred HHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 442 IEKMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 442 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...+. ...+..+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 23332 234677888887778888999999999999999996 5678889999999999999999999887764
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.81 E-value=0.094 Score=58.86 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=25.5
Q ss_pred HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445666665554333 233456666666666666666666666553
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.71 E-value=0.051 Score=43.02 Aligned_cols=71 Identities=20% Similarity=0.107 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-----P----IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
-+..|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++++++|.+..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4445666666777777777776654 1 123467888999999999999999999999999999987765544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.34 Score=42.03 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=75.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 035659 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404 (655)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 404 (655)
+...++|+++.|.++.+.+ .+...|..+.......|+.+-|.+.|.+..+ |..+.--|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777777776665 3456777777777777777777777776654 3334444555566655544
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.. .-....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 43333221 1 2444455566677777777777776432221 11223456666676666554
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.66 E-value=0.0047 Score=62.15 Aligned_cols=399 Identities=12% Similarity=0.044 Sum_probs=238.7
Q ss_pred ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 035659 69 DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148 (655)
Q Consensus 69 ~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~ 148 (655)
.+.+|+.|-.++.+.+ ++.+|+.-|=+. .|+..|..+|.+..+.|.+++-+..+.-. ++. .-++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~--~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG--MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSS--SCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccC--chHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHH
Confidence 5678999999999888 899988876544 46667889999999999999988877655 443 2344555688899
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------------------------CC
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK------------------------KD 204 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------------------~~ 204 (655)
|++.+++.+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. .+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998776544432 46666667788888889999999888887752 37
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t 284 (655)
+.+|-.+-.+|...+.+.-|.-.--.++- .......++..|-..|.++ +-+.+++.-... -......
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~------ELIsLlEaglgl--ErAHmGm 265 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFE------ELITMLEAALGL--ERAHMGM 265 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCT------TSTTTHHHHTTS--TTCCHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHH------HHHHHHHHHhCC--CchhHHH
Confidence 78999999999999999887654433332 1122334566677788866 777787776532 3566778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH-HcCCC------CchhhHHHHHHHHHhcCCHHHHHHHH-------------hhcC
Q 035659 285 FVSVLSACAQLGAMDIGVQIHAKMK-KQGIK------LNCYLTTSLIDMYTKCGNLDKALEVF-------------HTVK 344 (655)
Q Consensus 285 ~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~------~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~ 344 (655)
|+-|.-.|++-. +++..+-++..- +.+++ -....|.-++-.|.+-.+++.|.... .++.
T Consensus 266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 888877777753 233222222111 11222 13457888999999999999874431 1111
Q ss_pred C--CChhHHHHHHHHHHH---------------cCChHHHHHHHHHHHHcC-CC--------CCHHHHHHH-HHHHHccC
Q 035659 345 S--RDVFVWSTMIAGFAM---------------YGCGREALDLFSRMQEAK-VK--------PNAVTFTNV-LCACSHSG 397 (655)
Q Consensus 345 ~--~~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~g-~~--------p~~~t~~~l-l~a~~~~g 397 (655)
. .|+..|-..|.-|.+ .=+...+.++|++.-... ++ -|....|.. -..+....
T Consensus 345 ~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 345 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp GGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred HHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 1 244444444444433 333344444444321100 11 122222222 22234444
Q ss_pred cHHHHHHHHH------------HcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 035659 398 LVDEGRMFFN------------QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465 (655)
Q Consensus 398 ~~~~a~~~~~------------~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 465 (655)
+++.-+.-.+ ++.+ .+-.+.-..-...|.+.++++++.++.++=..-.|. +...+..|
T Consensus 425 Dy~~LR~SId~ydNFD~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDA------ietAa~S~ 494 (624)
T 3lvg_A 425 DYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDA------MQYASESK 494 (624)
T ss_dssp CCHHHHHTTSSCCCSCTTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGG------GTTTTTCC
T ss_pred hHHHHHHHHHHhccccHHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHH------HHHHHHcC
Confidence 4332221111 1100 011112223344567777888777766553322232 34456678
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
+.+.++++++-.++.+- ...|...+..|...=+.+-+.++
T Consensus 495 ~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 495 DTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 88888888888777653 35566666666666666655543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.45 E-value=0.039 Score=52.08 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=68.5
Q ss_pred HHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCchh
Q 035659 435 LDEAVEFIEKM-PIVPG---ASVWGALLGACKI-----HENVELAEYACSHLLELEPEN-HGALVLLSNIYAKT-GKWDN 503 (655)
Q Consensus 435 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 503 (655)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666664 45566 5688888888888 499999999999999999974 89999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 035659 504 VSELRKHMRVSGLKKEP 520 (655)
Q Consensus 504 a~~~~~~m~~~g~~~~~ 520 (655)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999886655334
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.10 E-value=0.089 Score=40.60 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 417 PGVKHYTCMVDMLGRAGL---LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445666777777654444 67888888775 3344 46677777888889999999999999999998873
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.76 E-value=0.069 Score=45.20 Aligned_cols=71 Identities=18% Similarity=0.038 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 418 GVKHYTCMVDMLGRAG---LLDEAVEFIEKM-PIV-P--GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
+..+.-.+..++.+.+ +.++++.++++. ... | +...+..|.-++.+.|++++|.+.++++++.+|+|..+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344444444444444 333444444443 111 2 234566777888999999999999999999999876543
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.25 E-value=2.9 Score=34.17 Aligned_cols=124 Identities=11% Similarity=0.039 Sum_probs=60.1
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------
Q 035659 285 FVSVLSA--CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----------------- 345 (655)
Q Consensus 285 ~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 345 (655)
...|+.| ..-.|.++++.++..+..+.. +..-||-+|--....-+-+...++++.+-+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 3344444 345688899999998888743 333344443333333344444444444332
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 346 ----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 346 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.+....+..+..+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.+.
T Consensus 85 ~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1222233344444445555555555544322 23444444445555555555555555555554443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.19 E-value=0.54 Score=38.18 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE---AVEFIEKM-PIV-P--GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 470 (655)
.+..+.+-|...... +. ++..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444443322 21 444444444445555544433 55555543 111 2 112233344445555555555
Q ss_pred HHHHHHHhccCCCCcc
Q 035659 471 EYACSHLLELEPENHG 486 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~ 486 (655)
.+.++.+++.+|.|..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 5555555555555443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.15 E-value=0.32 Score=38.28 Aligned_cols=65 Identities=17% Similarity=0.000 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELE-------PENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..-+..+...+...|+++.|...++++++.. +.....+..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788899999999999999999998853 234567889999999999999999999988763
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.96 E-value=2.4 Score=40.06 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHhhcCCCCh--hHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKSRDV--FVWSTMIAG-FAMY--GC------GREALDLFSRMQEAKVKPN---AVTFTNVLCACS 394 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 394 (655)
+.|+..+-.+.+.++...++ ..|..++.+ +... |. ..+|...+++..+ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555566666654443 356655543 3332 22 3455555555555 3454 345555555565
Q ss_pred cc-----CcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhc-CCHHHHHHHHHhC
Q 035659 395 HS-----GLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRA-GLLDEAVEFIEKM 445 (655)
Q Consensus 395 ~~-----g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~-g~~~~A~~~~~~m 445 (655)
.. |+.++|.++|++..+ +.|+ ..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 53 666666666666653 3442 45555555555553 6666666666553
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.14 E-value=1.3 Score=48.37 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999999875
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.86 E-value=15 Score=39.10 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
..-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|......+-..|- ........
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~--------- 141 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDK--------- 141 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHH---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHH---------
Confidence 3445556777788888888887766 333444444566777888998888887777765542 22333334
Q ss_pred ccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCH
Q 035659 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNL 333 (655)
Q Consensus 255 ~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 333 (655)
+|....+.|.+.++. .+.- +......|+...|..+...+ +++ ......++..+.+-..+
T Consensus 142 -------------l~~~~~~~g~lt~~~-~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~ 201 (618)
T 1qsa_A 142 -------------LFSVWRASGKQDPLA-YLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV 201 (618)
T ss_dssp -------------HHHHHHHTTCSCHHH-HHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH
T ss_pred -------------HHHHHHHCCCCCHHH-HHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH
Confidence 444444444222221 2222 23334556666666664433 232 22344555555444333
Q ss_pred HHHHHHHhhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHccCcHHHHHHHH
Q 035659 334 DKALEVFHTVKSRDVF---VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN----VLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 334 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~ 406 (655)
. ...... .++.. .+...+.-+++. +.+.|..+|....... ..+...... +.......+...++...+
T Consensus 202 ~---~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 202 L---TFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp H---HHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred H---HHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3 232222 22211 122223334443 7799999999886543 223332222 222333445345666666
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHH-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP-GASVW-GALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
...... .++.....-.+....+.|+++.|...|+.|+..+ +..-| --+..+....|+.++|..+|+++.+
T Consensus 276 ~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 276 DDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 654322 2333333444444557899999999999996432 22333 3345667788999999999999975
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.42 E-value=6.5 Score=34.00 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=92.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|.-.|+.++..++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 345789999999997765 4577999999999999999999999998875 44555566677887776666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
-+.....| -++.....+...|+++++.++|.+.-. -|. -.-.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~e------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPL------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHH------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHH------HHHHHHHcCcHHHHHHHHHHhC
Confidence 55555544 144555566778999999999977632 221 1111223567788888888874
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.55 E-value=1.6 Score=35.48 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH---HHHHHHHcchhcCccC--CcchHHHHHHHHHhcCCHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE---GRMFFNQMEPVYGVVP--GVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~ 436 (655)
.....+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+. + .| ...-.-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555665555443 566666667777777775554 88888877653 2 23 2233344556778888888
Q ss_pred HHHHHHHhC-CCCCCh
Q 035659 437 EAVEFIEKM-PIVPGA 451 (655)
Q Consensus 437 ~A~~~~~~m-~~~p~~ 451 (655)
+|.+.++.+ .++|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 888888776 455653
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.39 E-value=6.7 Score=32.39 Aligned_cols=65 Identities=8% Similarity=-0.053 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 449 PGASVWGALLGACKIHEN---VELAEYACSHLLELEPE-NHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .....+.|+-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 34566666666666553 334455666677777777777777766665
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.25 E-value=25 Score=37.38 Aligned_cols=414 Identities=10% Similarity=-0.051 Sum_probs=215.1
Q ss_pred HHHHHHHHHhC-CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q 035659 55 KQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133 (655)
Q Consensus 55 ~~~~~~~~~~g-~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 133 (655)
.++-..+.+.. .+....+-+.-+..+++.+ ++......+.. +..+...-.....+....|+..+|......+ ...
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~--~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l-W~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE--DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL-WLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT--CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCC--CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HhC
Confidence 55666655542 2223344455566677777 88888887776 4334444455666777788877787777776 444
Q ss_pred CCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHH
Q 035659 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213 (655)
Q Consensus 134 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 213 (655)
|. ........++..+. +.|.-.+..++ .-+......|+...|..+...+..........++.
T Consensus 132 ~~-~~p~~c~~l~~~~~----------------~~g~lt~~~~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~a 193 (618)
T 1qsa_A 132 GK-SQPNACDKLFSVWR----------------ASGKQDPLAYL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS 193 (618)
T ss_dssp SS-CCCTHHHHHHHHHH----------------HTTCSCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHH----------------HCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 32 23334444444444 43422222222 23355566778888888877764222122233333
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH--HHHHHHHH
Q 035659 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF--TFVSVLSA 291 (655)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~--t~~~ll~~ 291 (655)
.+.. ...+...... +.|+...-..++.++.+..+-+ ++.|..+|........+.+... ....+...
T Consensus 194 l~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~d----~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 261 (618)
T 1qsa_A 194 LANN---PNTVLTFART-----TGATDFTRQMAAVAFASVARQD----AENARLMIPSLAQAQQLNEDQIQELRDIVAWR 261 (618)
T ss_dssp HHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHhC---hHhHHHHHhc-----cCCChhhHHHHHHHHHHHHhcC----HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH
Confidence 2222 2222222211 1233332222222222222212 4588888888865442322222 12222223
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 368 (655)
....+...++...+....... .+.....-.+....+.|+++.|.+.|+.|.... ....-=+..++...|+.++|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 334443455556666554433 333333344444557799999999999998642 122223445677889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cc-----hHHHHHHHHHhcCCHHHHHHHH
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VK-----HYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-----~y~~li~~~~~~g~~~~A~~~~ 442 (655)
.+|+++... .+|-.++.+ .+.|..-. + ......+. .. .-..-+..+...|...+|...+
T Consensus 340 ~~~~~~a~~------~~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew 404 (618)
T 1qsa_A 340 EILHQLMQQ------RGFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (618)
T ss_dssp HHHHHHHTS------CSHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcC------CChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHH
Confidence 999998752 245444432 23332100 0 00001111 00 1123345677899999998877
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 035659 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP---ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519 (655)
Q Consensus 443 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 519 (655)
..+.-..+......+.......|..+.+.....+....+. .-+..|..++.-+++.-.++...-.--...|.++.+.
T Consensus 405 ~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 405 ANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 6652223444444555556678888888766654433220 1123466666666666666655433233445666554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.04 E-value=5.3 Score=43.51 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=77.2
Q ss_pred HHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC------CCCCCC-H
Q 035659 211 MISGFVQGGF-FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS------KNVNPD-E 282 (655)
Q Consensus 211 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~------~~~~p~-~ 282 (655)
++..+...++ .+.|+++|+++.+....-+......++..+...++-+ -+|.+++.+..+. . .++. .
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E-----v~av~ll~~~l~~~~~~~~~-l~~~~~ 327 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE-----LDMITILNETLDPLLSLLND-LPPRDA 327 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHHHHHHHT-CSSCCH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhhhhhh-hccccc
Confidence 3333444555 4678888888776532222222233333333333322 2555555554321 1 1221 1
Q ss_pred H-----HH-HHHH----HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 283 F-----TF-VSVL----SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 283 ~-----t~-~~ll----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
. .+ ..|+ .-|...|+++.|.++-++.+..- +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 00 1122 33667899999999999998864 5567899999999999999999999999886
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.78 E-value=2.5 Score=35.31 Aligned_cols=55 Identities=13% Similarity=-0.022 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 433 GLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
++.++|.++|+.+ .+... ..+|-....--.++|+...|.+++.+++.+.|.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 5566666666555 11001 5566666666678899999999999999888765443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.45 E-value=26 Score=39.05 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHhhcCCC----C--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--C-----CCHhhHHHHHHHHh
Q 035659 185 AICGDLAMAYCVFVMIGKK----D--VVSWNSMISGFVQGGFFEKAIELYREMEMENV--K-----PDEVTMVAVLSACA 251 (655)
Q Consensus 185 ~~~g~~~~A~~~f~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~~~ 251 (655)
...|+.++++.+++..... + +..=..+.-|.+..|..++++.++.......- . +....-..+.-+..
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3456666677777655431 1 12223445556667777788887777654321 1 11111222222333
Q ss_pred ccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH--H
Q 035659 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM--Y 327 (655)
Q Consensus 252 ~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~ 327 (655)
-.|.- -+++.+.+..+.... .+...... ++...+...|+-+....++..+.+.. +..+...+.-+ +
T Consensus 465 ~~GS~-----~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 465 AMGSA-----NIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp STTCC-----CHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred hcCCC-----CHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 33332 237788888877543 11111122 23333556788888888888877632 22333333333 3
Q ss_pred HhcCCHHHHHHHHhhcCC-CCh-hHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 328 TKCGNLDKALEVFHTVKS-RDV-FVWS---TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.-.|+.+.+..+.+.+.. .|. .-|. ++.-+|+..|+.....+++..+... ...+......+.-++...|..+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 466787777777776652 332 2333 3344677788877677788888764 222333332233344456666666
Q ss_pred HHHHHHcchhcCccCCcchHHHHHHHHHhcCCH-HHHHHHHHhCCCCCChhHH
Q 035659 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVW 454 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~ 454 (655)
.++++.+.+. ..|.+.--..+.-+....|.. .+|.+++..+...+|..+-
T Consensus 614 ~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 614 PRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 7777666542 244444444444444445443 5677788777444454433
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.88 E-value=1.6 Score=43.89 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCCc
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-----SGLKKEPG 521 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 521 (655)
...++..+...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999988999999999999999999999887654 47776654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.82 E-value=3.9 Score=34.14 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCeeHHHHHHHHHHhCCCh------hHHHHHHHHHHHCCCCCCHh----hHHHHHHHHh---ccCccccCCChHHHHHHH
Q 035659 203 KDVVSWNSMISGFVQGGFF------EKAIELYREMEMENVKPDEV----TMVAVLSACA---KKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~---~~~~~~~~~~~~~A~~l~ 269 (655)
.|..+|-..+.-.-+.|++ ++..++|++.... ++|+.. .|.-+.--|+ ..++ +++|.++|
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D------~d~aR~vy 83 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQE------PDDARDYF 83 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHC------GGGCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcC------HHHHHHHH
Confidence 4666777777777777777 6777777766653 444321 1111111111 1133 33666667
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 316 (655)
+.+...+ -.- ...|.....--.+.|++..|++++...+..+..|.
T Consensus 84 ~~a~~~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 84 QMARANC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 6665432 222 34444444444567777777777777777664443
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.71 E-value=2.3 Score=36.25 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=57.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCChhH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-------KHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGASV 453 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~ 453 (655)
.-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. +-.++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~-- 102 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV-- 102 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc--
Confidence 33445566667777666666554432333332 24455566666666666666666552 101111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++. . ...... -..+ +.+...-+-++.+|.+.|++++|+.+++.+..
T Consensus 103 ~~~~~-~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc-c---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 0 000000 0001 22334566789999999999999999886543
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.56 E-value=28 Score=35.44 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchh--hHHHHHHHHHhcCC--
Q 035659 262 PNEALSIFHELQLS----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNCY--LTTSLIDMYTKCGN-- 332 (655)
Q Consensus 262 ~~~A~~l~~~m~~~----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~~~~~g~-- 332 (655)
+++|++.+..+.+. +...........++..|...++++...+.+..+.+ +|..+... ..+.+++.......
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d 111 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD 111 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh
Confidence 56777776665532 22445567788889999999999988887766654 33322221 12222333322332
Q ss_pred HHHHHHHHhhcCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHccC
Q 035659 333 LDKALEVFHTVKSR--D--------VFVWSTMIAGFAMYGCGREALDLFSRMQEA--KVKPN---AVTFTNVLCACSHSG 397 (655)
Q Consensus 333 ~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g 397 (655)
.+.-..+.+.+... + ......|...|-..|++.+|..++.++... |.... ...+...+..|...+
T Consensus 112 ~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~ 191 (445)
T 4b4t_P 112 LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG 191 (445)
T ss_dssp HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC
Confidence 23333444433321 1 123456778888899999999999988643 22222 234555667788899
Q ss_pred cHHHHHHHHHHcchhc-CccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 398 LVDEGRMFFNQMEPVY-GVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~-~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
++.+|..++..+.... ...+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999988874321 11222 345677788888888998888777664
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.53 E-value=13 Score=28.36 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||++.|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776653 33333334556778999999999999999999999988755 467888888888888877
Q ss_pred cCCCCCHHHHHH
Q 035659 377 AKVKPNAVTFTN 388 (655)
Q Consensus 377 ~g~~p~~~t~~~ 388 (655)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.96 E-value=14 Score=28.26 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||++.|-++-.. +.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 56777777777776653 333333345567789999999999999999999999887554 67888888888878877
Q ss_pred cCCCCCHHHHHH
Q 035659 377 AKVKPNAVTFTN 388 (655)
Q Consensus 377 ~g~~p~~~t~~~ 388 (655)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 75 455555543
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.55 E-value=30 Score=34.36 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=12.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKM 308 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~ 308 (655)
....+...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555554443
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.50 E-value=39 Score=32.53 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF----SRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++- +-..+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444457788888888887543 233455667666555544 4445667888887777777766554
Q ss_pred CcHH-HHHHHHHHcch---hcC--ccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHH
Q 035659 397 GLVD-EGRMFFNQMEP---VYG--VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 397 g~~~-~a~~~~~~~~~---~~~--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
..-+ .=..+.+.+.+ +.| -.-|+.....+...|.+.|++.+|+..|- .+..+.+..+..++.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC----
Confidence 4211 01122222221 112 23356677788899999999999998884 3433334566666655544433
Q ss_pred HHHHHHHhccCCCCcchHHH-HHHHHHhcCCchhHHHHHHHHHh
Q 035659 471 EYACSHLLELEPENHGALVL-LSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|.....|.. .+--|...++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222322 23346678889999888777654
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.24 E-value=74 Score=35.52 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.5
Q ss_pred ccCCHHHHHHHHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~ 310 (655)
..|+.+.+..+.+.+..
T Consensus 536 ~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 536 NYGRQELADDLITKMLA 552 (963)
T ss_dssp TTTCGGGGHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh
Confidence 34444444444444443
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.06 E-value=7.5 Score=29.85 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34466677777777788999999999999999999999999999998765 3344556777764
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.06 E-value=15 Score=27.99 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=62.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (655)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3457888888888887763 444444455677889999999999999999999999888764 667778888777777
Q ss_pred HHCC
Q 035659 232 EMEN 235 (655)
Q Consensus 232 ~~~g 235 (655)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 7665
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.50 E-value=27 Score=40.48 Aligned_cols=65 Identities=11% Similarity=-0.120 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHG-----ALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
-|.-++..+.+++.++.+.++.+.+++..+++.. .|..+.+.+...|++++|...+-.+.....+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 4566777888889999999998888876533322 5677788888999999999888877765443
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.12 E-value=15 Score=28.04 Aligned_cols=80 Identities=10% Similarity=-0.105 Sum_probs=63.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (655)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888887763 44444445567788999999999999999999999988866 4788888888888788
Q ss_pred HHCC
Q 035659 232 EMEN 235 (655)
Q Consensus 232 ~~~g 235 (655)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7765
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.66 E-value=9.6 Score=32.42 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
-+...|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35556666777777777777664
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.53 E-value=12 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+-.|.-++.+.|+++.|.+..+.+++.+|.|.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 334444455555555555555555555555443
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.55 E-value=61 Score=37.57 Aligned_cols=140 Identities=9% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----C---------------
Q 035659 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK----D--------------- 204 (655)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~--------------- 204 (655)
.++..+...+..+.+.++... .+.+....-.+..+|..+|++++|...|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344445555555555444332 2344444445566788888888888888765320 0
Q ss_pred -------eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHhccCccccCCChHHHHHHHHHHH
Q 035659 205 -------VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD----EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273 (655)
Q Consensus 205 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~ 273 (655)
..-|..++..+-+.+.++.++++-+...+....-+ ...|..+.+++...++++ +|...+-.+.
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye------~Ay~aL~~~p 965 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD------AAHVALMVLS 965 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG------GGGHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH------HHHHHHHhCC
Confidence 01255666667777777777766555444321111 114566667777777765 6666665554
Q ss_pred HCCCCCCCHHHHHHHHHHHhccCC
Q 035659 274 LSKNVNPDEFTFVSVLSACAQLGA 297 (655)
Q Consensus 274 ~~~~~~p~~~t~~~ll~~~~~~g~ 297 (655)
... . -...+..++..++..|.
T Consensus 966 d~~-~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 966 TTP-L--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HSS-S--CHHHHHHHHHHHHHHCC
T ss_pred CHH-H--HHHHHHHHHHHHHhCCC
Confidence 432 2 23344445554444444
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.80 E-value=15 Score=28.21 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 445 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356788888999999999999999999998888765533344555443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.91 E-value=63 Score=30.81 Aligned_cols=168 Identities=12% Similarity=0.057 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL----FSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
|.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33445557788888888887543 23345667776665554 4444556788888877777766544
Q ss_pred cCcHH-HHHHHHHHcch---hcC--ccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhc---CC
Q 035659 396 SGLVD-EGRMFFNQMEP---VYG--VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH---EN 466 (655)
Q Consensus 396 ~g~~~-~a~~~~~~~~~---~~~--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g~ 466 (655)
-..-+ .=.++.+.+.+ ..| -.-++.....+...|.+.|++.+|+..|-. +...|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 22111 01122222221 011 123567788888899999999999887763 2111355666565555444 44
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++--+.-+ .+--|...|+...|..+++...+
T Consensus 184 ~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 4443222222 12335677889999998887654
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.30 E-value=14 Score=30.01 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 364 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3356666777777789999999999999999999999999999998764 4445667877764
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=73.25 E-value=10 Score=37.79 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
..++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|++.|+...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455666677777777766666654 23356667777777777777777777776654
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.04 E-value=47 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
...-.|.-++.+.|++++|.+..+.+++.+|.|..+
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 344566778999999999999999999999988544
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.55 E-value=39 Score=31.12 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCCHHHHHHHHh
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYL--TTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 341 (655)
.+......++.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3443334455566666665443221 1122333444555555555544
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.82 E-value=10 Score=35.25 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.+.+.|.+++|++..+.- .-.| |...-..|+..++..|+++.|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667777776665543 2233 34444556677777777777777777777777753
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.66 E-value=91 Score=29.71 Aligned_cols=83 Identities=6% Similarity=-0.089 Sum_probs=50.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY---GCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
-++.....+...|.+.|++.+|+.-|-.-...+...+..|+--+... |...++- ...-..++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHH-
Confidence 36778889999999999999999877633323455555555444433 3333221 11112222
Q ss_pred HHHccCcHHHHHHHHHHcchh
Q 035659 392 ACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~ 412 (655)
-|.-.|++..|..+|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 244568888888888876543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.08 E-value=1e+02 Score=29.68 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=48.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+--+...+...+ +|...-..++ -|.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL 198 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYL 198 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHH
Confidence 4677888899999999999999988853222223555555544443332111 1222222333 345
Q ss_pred ccCcHHHHHHHHHHcch
Q 035659 395 HSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~ 411 (655)
..+++..|..+++...+
T Consensus 199 ~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 56788888877766554
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.08 E-value=71 Score=27.93 Aligned_cols=169 Identities=7% Similarity=0.014 Sum_probs=97.0
Q ss_pred ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 035659 69 DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148 (655)
Q Consensus 69 ~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~ 148 (655)
|..+-...+...++.| ..+....+.+.+..+|...-...+.++.+.+.. ++...+..+ .. .+|...-...+.+
T Consensus 32 ~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~-l~---~~~~~vr~~a~~a 104 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKA-LK---DEDGWVRQSAAVA 104 (211)
T ss_dssp SHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHH-TT---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHH-Hc---CCCHHHHHHHHHH
Confidence 4444444444445555 433344444555556655555566666666654 344444444 22 3566666777778
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHH
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELY 228 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 228 (655)
+.+.++.+....+.. ++ -.++..+-...+.++.+.|..+....+.+.+..+|...-...+.++.+.+. .++...+
T Consensus 105 L~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 105 LGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 887777544333333 33 257777888888888888876555555555556676666667777777765 5566666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 229 REMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
.++.+. ++...-...+.++.+
T Consensus 180 ~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 180 EKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHhC---CCHHHHHHHHHHHHh
Confidence 666653 344444433333333
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.46 E-value=1.5e+02 Score=31.57 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcC---------------C-HHHHHHHHHHHhc-------cCC
Q 035659 428 MLGRAGLLDEAVEFIEKMPIVPG--ASVWGALLGACKIHE---------------N-VELAEYACSHLLE-------LEP 482 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g---------------~-~~~a~~~~~~~~~-------~~p 482 (655)
-+...|++++|..+|+-.+ ..| ..+.+.+++-....- + ...|.++.+.... ..+
T Consensus 452 ~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 4567899999999988875 222 234454444332211 1 2344444444222 122
Q ss_pred CCcchHHHHHHH-----HHhcCCchhHHHHHHHHH
Q 035659 483 ENHGALVLLSNI-----YAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 483 ~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~ 512 (655)
.+..++..|..+ +...|+|++|.+.++.+.
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 233455554433 378999999998877643
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.80 E-value=46 Score=29.28 Aligned_cols=102 Identities=11% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHHHHHHhC-CCCCChh---HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 437 EAVEFIEKM-PIVPGAS---VWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 437 ~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.+...|... ..+.|+. .|-..+..| ..++...+..+|..|...+ -.-+..|...+..+...|++++|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444443 2344543 444444443 2455778888888888754 55667888899999999999999999988
Q ss_pred HHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcc
Q 035659 511 MRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYV 564 (655)
Q Consensus 511 m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 564 (655)
=.+++-.| .+.+.....++..+|.+.+++
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 77776543 123445566777888888773
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.90 E-value=40 Score=27.42 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 035659 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182 (655)
Q Consensus 122 A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 182 (655)
...-++.+ ....+.|++......|++|.+.+|+..|..+++-+...- .+...+|..+++
T Consensus 72 lrrglN~l-~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33444444 455677888888888888888888888888887765542 344555666553
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.17 E-value=84 Score=27.43 Aligned_cols=118 Identities=8% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC
Q 035659 93 EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172 (655)
Q Consensus 93 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 172 (655)
.+.+.+..+|...-...+..+.+.+.. ++...+..+ .. .+|...-...+.++.+.++.+....+... + -.+
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~-l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~-l---~~~ 93 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKA-LK---DEDAWVRRAAADALGQIGDERAVEPLIKA-L---KDE 93 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHH-TT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHH-T---TCS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHH-Hc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHH-H---cCC
Confidence 333344444444444444455554442 233333333 11 23444444555555555543322222221 1 134
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCC
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGG 219 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 219 (655)
+..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 55555555555555555433333333333344433333444444433
No 272
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.90 E-value=66 Score=26.13 Aligned_cols=74 Identities=7% Similarity=-0.080 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChh
Q 035659 378 KVKPNAVTFTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGAS 452 (655)
Q Consensus 378 g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 452 (655)
+-.|+..|--.+..++.++. +..+|+.+++.+.+. +-.-.....-.|.-++.+.|++++|.+..+.+ .++|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34556665555666666665 455788888887754 31112344555667788999999999998886 6677643
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.92 E-value=92 Score=26.88 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=8.8
Q ss_pred CChhHHHHHHHHHHhcCCH
Q 035659 172 DDLFISNSLIHFYAICGDL 190 (655)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~ 190 (655)
++..+-...+.++.+.|+.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444444444443
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.17 E-value=67 Score=29.75 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=62.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc----hHHHHHHHHHhcC
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK----HYTCMVDMLGRAG 433 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~y~~li~~~~~~g 433 (655)
..+.|..++|++....-++.. +-|...=..++.-+|-.|++++|.+-++...+ +.|+.. .|..+|.+ .
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a----E 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA----A 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----H
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----H
Confidence 445677777777776666642 22444445566667777888888777776653 344432 33333321 1
Q ss_pred CHHHHHHHHHhC--C-CCCChhHH-HHHHHHH--HhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 434 LLDEAVEFIEKM--P-IVPGASVW-GALLGAC--KIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 434 ~~~~A~~~~~~m--~-~~p~~~~~-~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
... .++|..- | +--.+.-| ..|+.+. ...|+.++|..+-.++++.-|..+.
T Consensus 79 ~~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QAR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 100 1122211 1 10112224 3344443 3457888888888888777665544
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.60 E-value=1.6e+02 Score=29.03 Aligned_cols=291 Identities=10% Similarity=0.044 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--------CCeeHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHhhH----
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGK--------KDVVSWNSMISGFVQGG-FFEKAIELYREMEMENVKPDEVTM---- 243 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~---- 243 (655)
...|...|.+.|+.++...++..... +....-..||..+.... ..+.-.++..+..+..- -+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34566777777777777777766543 12233445555555532 22333333333332110 011222
Q ss_pred --HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC
Q 035659 244 --VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIK 314 (655)
Q Consensus 244 --~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~ 314 (655)
..++..|...|++. +|++++.++...- -..| ...+..-+..|...+++.+++..+...... .+.
T Consensus 101 l~~kL~~l~~~~~~y~------~a~~~i~~l~~~~-~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 101 LEARLIALYFDTALYT------EALALGAQLLREL-KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHH-TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhHH------HHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 14566666666655 6766666665532 1111 223444555666777777777777666542 121
Q ss_pred CchhhHHH----HHHHHH-hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035659 315 LNCYLTTS----LIDMYT-KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389 (655)
Q Consensus 315 ~~~~~~~~----li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 389 (655)
+++.+... -.-++. ..+++..|...|-+.. ..|-..|.. ++ .+...|..+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~-------------~~~lkYlvL 228 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KA-------------LTSLKYMLL 228 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HH-------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HH-------------HHHHHHHHH
Confidence 22222211 112233 4556666555543320 111111100 00 012233222
Q ss_pred HHHHHccCcHHHHHHHHH-HcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhH---HHHHHHHHHh
Q 035659 390 LCACSHSGLVDEGRMFFN-QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASV---WGALLGACKI 463 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~---~~~ll~~~~~ 463 (655)
. +...... .+-..++. .....+ ..|+...+..++.+| +.+++.+...+++.. .+..|... +..|....
T Consensus 229 ~-aLl~~~r-~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I-- 302 (394)
T 3txn_A 229 C-KIMLGQS-DDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM-- 302 (394)
T ss_dssp H-HHHTTCG-GGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--
T ss_pred H-HHHcCCH-HHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--
Confidence 2 2222221 11112221 111111 245555566666654 456777777777765 24445543 22222222
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
-+..+.++. .|-....+..++..+.- ..++++..+-.|...|.
T Consensus 303 ------r~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 303 ------LEQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp ------HHHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred ------HHHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 122233333 35555666677666543 57888888888888764
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.31 E-value=94 Score=25.92 Aligned_cols=49 Identities=6% Similarity=-0.017 Sum_probs=35.5
Q ss_pred HHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 470 AEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 470 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
+..+|..|...+ -..+..|...+..+...|++++|.++++.=.+++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 667777776654 5556677778888888888888888888777665443
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.81 E-value=1.3e+02 Score=25.98 Aligned_cols=136 Identities=8% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHh
Q 035659 89 EYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS 168 (655)
Q Consensus 89 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (655)
+....+.+.+..+|...-...+.++.+.+.. ++...+..+ .. .+|...-...+.++.+.++.+....+.. ++
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~-l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l-- 116 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKA-LK---DEDGWVRQSAAVALGQIGDERAVEPLIK-AL-- 116 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHH-TT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHH-Hc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HH--
Confidence 3333444444455555445555666666654 344444444 22 3566677777778888777644333333 32
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 169 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
-.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|. .++...+..+.+.
T Consensus 117 -~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d 180 (201)
T 3ltj_A 117 -KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET 180 (201)
T ss_dssp -TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC
Confidence 256777878888888888876555555555666666666666777777665 4566666666543
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.80 E-value=1.4e+02 Score=27.54 Aligned_cols=163 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred HHHHHHHHHhCCC-CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q 035659 55 KQIHTQMLRTGLF-FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133 (655)
Q Consensus 55 ~~~~~~~~~~g~~-~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 133 (655)
.++...+.+.++. .|..-.+. +...+..| +.+-+..+++.-..++...-.+.+...+..|+.+-+..++ ..
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g--~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-----~~ 84 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSA-SYYAIADN--NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL-----FS 84 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCH-HHHHHHTT--CHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH-----HT
T ss_pred HHHHHHHHhCCCCccCCCCCCH-HHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-----HC
Confidence 3444444444432 23333333 33445566 7777777776644333222122334445556654433333 22
Q ss_pred CCCCC---cchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhcCCC-Cee
Q 035659 134 PYFPN---EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF---ISNSLIHFYAICGDLAMAYCVFVMIGKK-DVV 206 (655)
Q Consensus 134 ~~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~ 206 (655)
|..++ ..-.+.+ ...+..|+.+.+ +.+++.|..++.. -+.+.+...+..|+.+-+..+++.-... +..
T Consensus 85 ga~~~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 159 (285)
T 3kea_A 85 GLDDSQFDDKGNTAL-YYAVDSGNMQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159 (285)
T ss_dssp TCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred CCCCCCcCCCCCcHH-HHHHHcCCHHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Confidence 33332 2222233 333445555433 3344445433322 1134555566677777777776654443 221
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHH
Q 035659 207 SWNSMISGFVQGGFFEKAIELYRE 230 (655)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~ 230 (655)
.-.+.+...+..|..+-+.-+++.
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHcChHHHHHHHHHc
Confidence 233344444566665544444433
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.73 E-value=1.1e+02 Score=29.03 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=42.6
Q ss_pred HhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 443 EKMPIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 443 ~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
...+++|. ..+..+-++.+.+++|+..|..+.+++++++|... ..++|.+++..-.+.+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 33355554 45677788889999999999999999999998522 2455777766665543
No 280
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.64 E-value=2.2e+02 Score=28.57 Aligned_cols=184 Identities=9% Similarity=0.087 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHH----HHHcCC
Q 035659 296 GAMDIGVQIHAKMKKQ-----GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAG----FAMYGC 363 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~----~~~~g~ 363 (655)
|+++.|.+.+-.+.+. +...+..+...++..+.+.|+++...+.+..+..+. ...-..|+.. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777777666542 345567778889999999999999877776655431 1222333332 223333
Q ss_pred hHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHccCcHHHHHHHHHHcchh-cCccCC---cchHHHHHHHHHh
Q 035659 364 GREA--LDLFSRMQE--AK-VKP---NAVTFTNVLCACSHSGLVDEGRMFFNQMEPV-YGVVPG---VKHYTCMVDMLGR 431 (655)
Q Consensus 364 ~~~A--~~~~~~m~~--~g-~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~---~~~y~~li~~~~~ 431 (655)
.+.. +.+.+.... .| +-. ....-..|...+...|++.+|..++..+... ++.... ...|..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3322 222221111 11 111 1223355677789999999999999987643 232222 4678888999999
Q ss_pred cCCHHHHHHHHHhC-----CCC--CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 432 AGLLDEAVEFIEKM-----PIV--PG--ASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-----~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
.+++.+|..+++++ ... |+ ...+...+..+...+++.+|-+.|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999988876 122 22 23445566667778889888888877765
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.51 E-value=97 Score=28.26 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 178 NSLIHFYAICGDLAMAYCVFVMIG 201 (655)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~f~~~~ 201 (655)
++.+...++.|+++....+++.-.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCC
Confidence 344555566677766666666543
No 282
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=47.28 E-value=11 Score=27.98 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccHHHHHHHhh
Q 035659 542 PLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGL 597 (655)
Q Consensus 542 ~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~ 597 (655)
+...+|...+++-..+++..|+.||...+ -.+...+.+|.+...||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~---------G~eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF---------GREAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE---------CHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE---------cHHHHHHHHHHHhHhhcc
Confidence 44567888899999999999999996554 222334556666666663
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.81 E-value=57 Score=28.97 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=7.1
Q ss_pred HHhcCCHHHHHHHHhh
Q 035659 327 YTKCGNLDKALEVFHT 342 (655)
Q Consensus 327 ~~~~g~~~~A~~~~~~ 342 (655)
..+.|+.+-+.-+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3444555444444433
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.79 E-value=35 Score=34.44 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=28.9
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
...+..-+.+.|++++|.+.|.++... ...+. ...+-.++.++...+++..|...+++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445555555555555555555432 11111 334444555555555555555555443
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.88 E-value=1.2e+02 Score=25.66 Aligned_cols=49 Identities=6% Similarity=-0.069 Sum_probs=36.7
Q ss_pred HHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 470 AEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 470 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
+..+|..|...+ ..-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 556777776644 5566778888888888999999999888877766543
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.48 E-value=26 Score=32.13 Aligned_cols=31 Identities=0% Similarity=-0.100 Sum_probs=14.6
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (655)
.-++.|..+ +..|+.+ +++.+.+.|..++..
T Consensus 92 ~g~t~L~~A-~~~g~~~----~v~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 92 RGQTALHIA-IERRCKH----YVELLVEKGADVHAQ 122 (260)
T ss_dssp ESBCHHHHH-HHTTCHH----HHHHHHHTTCCTTCC
T ss_pred CCCCHHHHH-HHcCCHH----HHHHHHhCCCCcCcc
Confidence 333444333 3455544 444455566555543
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.23 E-value=86 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDV---FVWSTMIAGFAMYGC--GREALDLFSRMQEAKVKP 381 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 381 (655)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45567777778888888888888876522 233333344443322 345666666666655443
No 288
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=43.02 E-value=7.7 Score=23.69 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=10.4
Q ss_pred cccc-CCccccCCCC
Q 035659 641 FHHF-RGGNCSCMDY 654 (655)
Q Consensus 641 ~h~f-~~g~csc~~~ 654 (655)
=|.. .+|.|||+-|
T Consensus 15 PHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 15 PHRLNSLGGCRCGKY 29 (42)
T ss_dssp TSCCCTTSSBTTTTB
T ss_pred CceecCCceeccccc
Confidence 3444 7899999976
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.53 E-value=46 Score=29.75 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=5.9
Q ss_pred CCchHHHHHHHHHHH
Q 035659 153 VQFRVGQAIHGMVIK 167 (655)
Q Consensus 153 ~~~~~a~~~~~~~~~ 167 (655)
|+.+..+.+++.+.+
T Consensus 20 g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQ 34 (241)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 444444434333333
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.16 E-value=1.7e+02 Score=28.44 Aligned_cols=218 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 035659 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSV 288 (655)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~l 288 (655)
..+|.-|...++.++|...++++..... .......++......++.+ -+.+-.++..+. .+ +-+.......+
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~e----rE~~s~LLs~L~-~~-~ls~~~i~~gf 129 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASH----REMTSKLLSDLC-GT-VMSTNDVEKSF 129 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHH----HHHHHHHHHTTT-TT-SCCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHH----HHHHHHHHHHHH-hC-CCCHHHHHHHH
Q ss_pred HHHHhccCC--------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC--HHHHHHHHhhcCCCCh----------
Q 035659 289 LSACAQLGA--------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN--LDKALEVFHTVKSRDV---------- 348 (655)
Q Consensus 289 l~~~~~~g~--------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~---------- 348 (655)
...+....+ ++..-.++.+++..++-|-.+........-+..|. ++.|..++..=.....
T Consensus 130 ~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~ 209 (358)
T 3eiq_C 130 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGG 209 (358)
T ss_dssp HHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCS
T ss_pred HHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCC
Q ss_pred --------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHcchhcCccCC
Q 035659 349 --------FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG--LVDEGRMFFNQMEPVYGVVPG 418 (655)
Q Consensus 349 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~ 418 (655)
...+.++.-|...|+.++|.+.++++......+..+ ...+..+.-+.+ ..+...+++..+.+. ++-+.
T Consensus 210 ~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V-~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~ 287 (358)
T 3eiq_C 210 QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV-YEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 287 (358)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred CccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHH-HHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCH
Q ss_pred cchHHHHHHHHHhcCCHH
Q 035659 419 VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~ 436 (655)
......+...+....++.
T Consensus 288 ~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 288 DQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhh
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.92 E-value=1.9e+02 Score=27.41 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC
Q 035659 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276 (655)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~ 276 (655)
.+.++.-|...|+.+||.+.++++...... .......+..+.-+.++.. .+...+++..+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~----re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGEST----FKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHCC
Confidence 467888888889999999999888531111 1223333444444433322 235667777776665
No 292
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.69 E-value=2.5e+02 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhc
Q 035659 180 LIHFYAICGDLAMAYCVFVMI 200 (655)
Q Consensus 180 li~~~~~~g~~~~A~~~f~~~ 200 (655)
.+...++.|+.+....+++.-
T Consensus 116 ~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 116 PLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhCC
Confidence 344445566766666666543
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.87 E-value=1.9e+02 Score=28.96 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSR------DVFVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
+...+.+.|.++|++++|.+.|.++... -+..+-..|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666666666666666666655421 22344445555555555555555555543
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.55 E-value=1.2e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC
Q 035659 178 NSLIHFYAICGDLAMAYCVFVMIGKK 203 (655)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~f~~~~~~ 203 (655)
+.++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 44555555556666666666555443
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.99 E-value=1.1e+02 Score=24.59 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---eeHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKD---VVSWNSMISGFVQGGF--FEKAIELYREMEMENVKPD 239 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 239 (655)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888999999999999987652 2344455555555432 3556777877777665443
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.95 E-value=1e+02 Score=27.21 Aligned_cols=207 Identities=8% Similarity=0.017 Sum_probs=98.0
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCY--LTTSLIDMYTKCGNLDKALEVFHTVKSRD----VFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 365 (655)
.++.|+++..+.++ +.|..++.. .....+...++.|+.+-+..+++.-...+ ...++. +...+..|+.+
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH
Confidence 35567765555444 455443321 12234556677888888877777654322 112223 33334456544
Q ss_pred HHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAV---TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~ 439 (655)
+++.+.+.|..++.. ..+ .+...+..|..+-...+++. |..++ ..-.+.+..+ +..|...+..
T Consensus 91 ----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~-----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~ 159 (240)
T 3eu9_A 91 ----MVVQLMKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWA-AYRTHSVDPT 159 (240)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHH-HHHCCSSTTH
T ss_pred ----HHHHHHHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhc-----CCCccccCCCCCcHHHHH-HHhCChHHHH
Confidence 344444555555432 222 23344455777665555543 33332 2222333333 3344445556
Q ss_pred HHHHhCCCCCChh---HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 440 EFIEKMPIVPGAS---VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 440 ~~~~~m~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
+++.+.+..++.. .-.+.+......|+.+.+..+++.-...+..+..-.. -...-.+.|..+-+.-+++...+.+
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhhccC
Confidence 6666654332211 1123445556778888777776664333322211111 2233355677666665555544443
No 297
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.51 E-value=1.6e+02 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCCh--hHH-----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 435 LDEAVEFIEKMPIVPGA--SVW-----GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 435 ~~~A~~~~~~m~~~p~~--~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
++.|+.+++.+.-+-|. ..- -..+..|.+.|.+++|.+++++.....+.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45666666666332221 111 1233568889999999999999888776655544444433
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.46 E-value=2e+02 Score=28.53 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.8
Q ss_pred HhcCCHHHHHHHHHh
Q 035659 430 GRAGLLDEAVEFIEK 444 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~ 444 (655)
++.|+.+-+..+++.
T Consensus 286 ~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 286 AQEGHVPVADVLIKH 300 (437)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhC
Confidence 455665555555543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.03 E-value=89 Score=26.07 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGC--GREALDLFSRMQEAKVKP 381 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 381 (655)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4556777777888888888888887652 2233333334433222 334566666666555443
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.83 E-value=3.4e+02 Score=27.88 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hH------H-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV-FV------W-STMIAGFAMYGCGREALDLFSRMQEAKVKPNAV---- 384 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~------~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 384 (655)
..++|.+++.|...+.++.|..+.....-|.. .+ | --+...+.-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 45677888888888888888888887765422 11 1 123445666788888888888776531 12211
Q ss_pred ---HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 035659 385 ---TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461 (655)
Q Consensus 385 ---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 461 (655)
.+..++-+-.-.|.+.+ ..+|.. ++++.....|..|+.++ +.|++++-...+++-. ..+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~-r~lf~q----~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F 371 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPE-LSFFHQ----SNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLL 371 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCC-HHHHTT----TSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHH
T ss_pred HHHHHHHHHhHHhhcCCCCC-hHHhhc----hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------cee
Confidence 11111111011233222 111211 12222233477777775 6677776665555431 123
Q ss_pred HhcCCHHHHHHHHHHHhc-----cC-CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 462 KIHENVELAEYACSHLLE-----LE-PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~-----~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
.+.|.+...+++-..+.+ +. .-+......++..+ .....++|+.+...|...|.
T Consensus 372 ~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTS
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 344444444433333222 22 11112222222222 11234679999999988775
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.19 E-value=2.9e+02 Score=25.36 Aligned_cols=119 Identities=7% Similarity=-0.001 Sum_probs=59.9
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+..|..+-...+++. |..++ ..-+.+.+...+..|+.+-+..+++.-....+...-.+.+......|+.+.
T Consensus 102 A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 3455666665555554 33332 222223444455677777666666554322233122344445567788888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCC
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 520 (655)
+..+++.-...+..+..-....+..-+..|.. ++.+.+.+.|..++.
T Consensus 177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 88887776555433322111111112234443 455666677766544
No 302
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.36 E-value=3.4e+02 Score=26.01 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCe---eHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCC
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDV---VSWNSMISGFVQGG-FFEKAIELYREMEMENVK 237 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 237 (655)
...++.-|...|++++|.+.++++..|.. .....+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35677888888999999999988876632 22223333332221 123445566666655543
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.47 E-value=2e+02 Score=25.40 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~ 345 (655)
+-.|.+.|.+++|.++|++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3445566666666666666544
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.12 E-value=3.1e+02 Score=30.83 Aligned_cols=126 Identities=11% Similarity=-0.030 Sum_probs=72.8
Q ss_pred HHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC
Q 035659 75 KLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ 154 (655)
Q Consensus 75 ~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 154 (655)
.++..+...| ..+.|+++..-.+. +..+-=.+..+|...|++++|.+.|++. ..|+..+.......
T Consensus 815 ~l~~~L~~~~--~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~~--------- 880 (950)
T 4gq2_M 815 ELVEKLFLFK--QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL--------- 880 (950)
T ss_dssp HHHHHHHHTT--CHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGGG---------
T ss_pred HHHHHHHHhc--HHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccch---------
Confidence 3667777788 89999988887776 3322223556788999999999999987 45554333221110
Q ss_pred chHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHh----hcCCCCe----eHHHHHHHHHHhC
Q 035659 155 FRVGQAIHGMVIKSSF-EDDLFISNSLIHFYAICGDLAMAYCVFV----MIGKKDV----VSWNSMISGFVQG 218 (655)
Q Consensus 155 ~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~----~~~~~~~----~~~~~li~~~~~~ 218 (655)
+....++. .... .....-|..++..+-+.+.++.+.++-+ .+...|. ..|+.+..+.+..
T Consensus 881 -~~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 881 -REFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -HHHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00111111 0100 1112357778888888888777665543 3333333 2566666665543
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.85 E-value=1.3e+02 Score=30.93 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc--ch-HHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV--KH-YTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~-y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
..++.+++-|.+.+.++.|..+.....--....++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455666666777777777777777653100000110 11 122344555667777776666553
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.36 E-value=3.6e+02 Score=27.22 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHH
Q 035659 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYR 229 (655)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (655)
.+.+.|.++ +.+.|++--...|..-.+.+...|++++|-++--.-+. ++..+.+.+-..=.+.|+..--+..|.
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 444444333 44556665555666666677778888888777655544 333333333332233344444444444
Q ss_pred HHHHC
Q 035659 230 EMEME 234 (655)
Q Consensus 230 ~m~~~ 234 (655)
.+.+.
T Consensus 420 ~Ll~~ 424 (494)
T 1bpo_A 420 ILLDQ 424 (494)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 44444
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.30 E-value=1.4e+02 Score=26.12 Aligned_cols=179 Identities=13% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCh--hHHHHHHHHH
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL--FISNSLIHFY 184 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~ 184 (655)
+..+...++.|+.+....++..- ...-..+|..-.+.+..++.... .++.+.+++.|..++. ....+.+...
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHhhcCCCCeeHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHhccCccccCC
Q 035659 185 AICGDLAMAYCVFVMIGKKDVVSWN--SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV--AVLSACAKKRDLEFGR 260 (655)
Q Consensus 185 ~~~g~~~~A~~~f~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~~~ 260 (655)
+..|+.+-+..+++.-...+..... +.+...+..|+.+ +++.+.+.|..++..... +.+...+..|+.+
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 153 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK--- 153 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH---
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH---
Q ss_pred ChHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHH
Q 035659 261 WPNEALSIFHELQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 261 ~~~~A~~l~~~m~~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~ 306 (655)
+++.+.+.| ..++..... +.+...+..|+.+.+..+++
T Consensus 154 -------~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 -------MVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp -------HHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -------HHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHH
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.16 E-value=52 Score=24.97 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=31.1
Q ss_pred ChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHH
Q 035659 87 SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSF 123 (655)
Q Consensus 87 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 123 (655)
+.+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 7889999999999999999999999998767655443
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.11 E-value=2.5e+02 Score=23.72 Aligned_cols=181 Identities=8% Similarity=-0.070 Sum_probs=0.0
Q ss_pred HHhhhcCCCCChHHHHHHhhcCC----CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchH--HHHHHHHH
Q 035659 77 FTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF--PFVIKAAA 150 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~--~~ll~~~~ 150 (655)
+...+..| +.+....+++.-. .+|...++.|..+..... .++++.+ ...|..++.... .+.+...+
T Consensus 9 L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~L-l~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 9 LLEAANQR--DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKAL-IDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp HHHHHHTT--CHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHH-HHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHhc--cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHH-HHcCCCCCCCCCCCCCHHHHHH
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc-CC---CCeeHHHHHHHHHHhCCChhHHHH
Q 035659 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI-GK---KDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
..|+.+.++.+++. ....+........+.+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.+
T Consensus 81 ~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 81 AQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HTTCHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HcCCHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Q ss_pred HHHHHHHCCCCCCHhhHH--HHHHHHhccCccccCCChHHHHHHHHHHHHCC
Q 035659 227 LYREMEMENVKPDEVTMV--AVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276 (655)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~ 276 (655)
+++.+.+.|..++..... +.+......|+.+ +.+.+.+.|
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----------~~~~Ll~~G 201 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTE----------ISKILAQYN 201 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----------HHHHHHTCC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHh----------HHHHHHhcC
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.59 E-value=2.1e+02 Score=25.81 Aligned_cols=21 Identities=10% Similarity=-0.039 Sum_probs=16.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHh
Q 035659 109 LIRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 109 li~~~~~~g~~~~A~~~~~~m 129 (655)
-+..+....++++|+++.++.
T Consensus 24 eLDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 356777788888888887765
No 311
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.48 E-value=44 Score=22.71 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=21.2
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHH
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~ 283 (655)
|.....++ ++.|+..|.++...+.++|+.+
T Consensus 28 cL~~~~Wd----~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 28 CLQDNNWD----YTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHHHTTTC----HHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHHHcCCC----HHHHHHHHHHHHHcCCCCHHHh
Confidence 33444555 7799999999988776777643
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.89 E-value=78 Score=23.97 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHH
Q 035659 188 GDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 188 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
...+.|.++++.++.+...+|..++.++.+.|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468999999999999999999999999987777665543
No 313
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.53 E-value=70 Score=16.75 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHh
Q 035659 543 LCKEIYSKLDEIVARLKS 560 (655)
Q Consensus 543 ~~~~~~~~~~~l~~~m~~ 560 (655)
...++|.+++++.+++++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356778888877776654
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.14 E-value=2.5e+02 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..+..+.+.+.. ...+......+..+.+.|+-++|.++|-+.+..
T Consensus 76 ~L~~~L~~~l~~--~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 76 AISSKLSQSILS--SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHH
Confidence 344444444422 333445555667777888888888887665543
No 315
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.06 E-value=3.1e+02 Score=23.92 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=15.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCC
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIKL 315 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~~ 315 (655)
..+..|+.+..+.+++.+.+.|..+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3455677777777776666555443
No 316
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.18 E-value=1.3e+02 Score=23.90 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 035659 268 IFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ 311 (655)
Q Consensus 268 l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 311 (655)
+|+.+.... +.|+...--.-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~-Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGK-LSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 455555444 7666554444555567788999999999888764
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.15 E-value=3.1e+02 Score=22.76 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=28.9
Q ss_pred HHHHHhhcCCC-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 035659 193 AYCVFVMIGKK-----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239 (655)
Q Consensus 193 A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (655)
+..+|..|... -..-|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 55555555442 233466666666677777777777777766666653
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.74 E-value=1.7e+02 Score=19.84 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-hccCccc
Q 035659 221 FEKAIELYREMEMENVKPDEVTMVAVLSAC-AKKRDLE 257 (655)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~ 257 (655)
.++|.+.|.+|++..-.++.-||...++.+ .+-.++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~ 39 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYW 39 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccc
Confidence 468889999988776566677888888888 6655543
No 319
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.36 E-value=5.2e+02 Score=25.06 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC----eeHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCC
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKD----VVSWNSMISGFVQGGF-FEKAIELYREMEMENVKPD 239 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~ 239 (655)
..+++.=|...|++++|.+.++++..|+ .+.+..+..++-+... -+.+-.++..+...|+-+.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 3567777888888888888888887664 2233333333322211 1334456666666554433
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.05 E-value=2e+02 Score=23.53 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccc
Q 035659 193 AYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLE 257 (655)
Q Consensus 193 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 257 (655)
+.+.+....-+-...=..++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|-+.
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 33344433333444445566666666677778888888888777777777777777777777654
No 321
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.64 E-value=1.7e+02 Score=26.36 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=27.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhh-------HHHHHHHHh--ccCccc
Q 035659 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVT-------MVAVLSACA--KKRDLE 257 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~ 257 (655)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~ 63 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHH
Confidence 3445567888887788887777776666333 344444442 456653
No 322
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.30 E-value=18 Score=19.06 Aligned_cols=14 Identities=36% Similarity=1.047 Sum_probs=9.2
Q ss_pred cccCCccc--cCCCCC
Q 035659 642 HHFRGGNC--SCMDYW 655 (655)
Q Consensus 642 h~f~~g~c--sc~~~~ 655 (655)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36778877 466655
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.85 E-value=3e+02 Score=24.59 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 468 ELAEYACSHLLELE--PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 468 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
+.+..+|..|...+ -..+..|...+..+...|++.+|.++++.=.+++-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 35556777776644 555667788888888888999988888877766544
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.20 E-value=2.5e+02 Score=20.70 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHH
Q 035659 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224 (655)
Q Consensus 158 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 224 (655)
...++..+...|+- +..-+..+-. .....++|.++++.++.+...+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34566666666632 2222222222 356788999999999999999999999999888765444
No 325
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.09 E-value=31 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCcEEEec----ccccCcchhHHHHHHhhhcCceEEEecCCcccccCCcccc
Q 035659 603 SQPIRIVK----NLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCS 650 (655)
Q Consensus 603 ~~~~~~~~----nl~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~~g~cs 650 (655)
...+||+. ..++|.+| .+...-..-.++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45577775 47888887 444445555789999999999874
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.71 E-value=2.5e+02 Score=22.86 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHH
Q 035659 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 436 (655)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345566777665544 3444444455556677777777654 43445555555667777777753
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.41 E-value=4e+02 Score=25.30 Aligned_cols=219 Identities=13% Similarity=0.068 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL--TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA 356 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 356 (655)
..|..-.+.|..+ +..|+.+..+.++ +.|..++... ..+.+...+..|+.+-+.-+++.-...+...-.+.+.
T Consensus 15 ~~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 15 KSDDENMEKIHVA-ARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp -CCHHHHHHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred ccCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence 4566566655554 4567776665555 4554443221 1233455566788888888877655443322222334
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------------------HHHHHHHHHHHccC--cHHHHHHHHHHcchhcC
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKPNA--------------------VTFTNVLCACSHSG--LVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------------~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~ 414 (655)
.-+..|+.+-+..+++.....|..|+. .-.+.|. ..+..| ..+-...+++. |
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~-----g 163 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILVQL-----G 163 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHHHH-----T
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHHHc-----C
Confidence 445678877777777665544544443 1123333 344456 66655555554 4
Q ss_pred ccCCcch--HHHHHHHHHhcCCHHHHHHHHHhCCC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 415 VVPGVKH--YTCMVDMLGRAGLLDEAVEFIEKMPI-------VPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 415 ~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~m~~-------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..++... -.+.+...++.|+.+-+..+++.-.. ..|..-++. +...+..|+.+-+..+++.-...+..+.
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~ 242 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNMEDN 242 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 3333211 11233344577888877777775311 112222222 3334567777766655554333322222
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHH
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.-...| ..-+..|..+-+.-+++.
T Consensus 243 ~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 243 EHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCHH-HHHHHhChHHHHHHHHHc
Confidence 212222 223345666666555554
No 328
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.12 E-value=5.5e+02 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKD 204 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~ 204 (655)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4577888888999999999999987764
Done!