Query 035660
Match_columns 448
No_of_seqs 217 out of 1732
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.4E-77 3.1E-82 610.3 45.7 417 8-446 4-431 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.8E-58 6.1E-63 466.0 36.3 339 91-444 41-397 (398)
3 cd05489 xylanase_inhibitor_I_l 100.0 3.3E-54 7.2E-59 429.6 33.0 317 103-441 2-361 (362)
4 cd05472 cnd41_like Chloroplast 100.0 5.1E-54 1.1E-58 419.9 32.6 287 96-443 1-299 (299)
5 PTZ00165 aspartyl protease; Pr 100.0 2.7E-53 5.8E-58 434.4 38.1 304 91-445 115-450 (482)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 5.6E-54 1.2E-58 424.3 30.7 295 95-444 2-326 (326)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-53 3.4E-58 421.3 32.0 297 93-440 3-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 6.7E-53 1.5E-57 415.0 29.6 293 97-440 1-316 (316)
9 cd05478 pepsin_A Pepsin A, asp 100.0 1.4E-52 3E-57 413.0 30.7 291 93-440 7-317 (317)
10 cd05477 gastricsin Gastricsins 100.0 3.1E-52 6.8E-57 410.8 32.1 298 94-441 1-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.5E-51 3.3E-56 406.1 30.8 293 93-440 7-320 (320)
12 cd05487 renin_like Renin stimu 100.0 1.7E-51 3.6E-56 406.8 30.8 300 92-441 4-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 2.5E-51 5.5E-56 403.8 31.6 287 92-440 6-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 3.7E-51 8E-56 404.6 30.6 298 92-440 7-329 (329)
15 cd05473 beta_secretase_like Be 100.0 1.1E-50 2.3E-55 406.9 30.5 312 95-447 2-351 (364)
16 cd05475 nucellin_like Nucellin 100.0 1.4E-50 3.1E-55 390.2 29.1 256 95-443 1-273 (273)
17 PTZ00147 plasmepsin-1; Provisi 100.0 3.9E-50 8.5E-55 408.1 31.1 292 92-442 135-450 (453)
18 cd05476 pepsin_A_like_plant Ch 100.0 1.5E-49 3.2E-54 381.7 28.2 256 96-443 1-265 (265)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.8E-49 8.3E-54 400.1 30.9 292 92-442 134-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 2.4E-47 5.1E-52 369.0 25.5 258 97-440 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.4E-45 5.3E-50 358.0 26.0 262 96-441 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.6E-45 3.5E-50 362.5 18.5 293 96-441 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.8E-43 8.1E-48 339.9 27.3 262 97-440 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.3E-32 2.9E-37 244.2 14.7 157 97-265 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 5.2E-28 1.1E-32 214.5 15.7 155 282-440 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.3E-23 2.9E-28 173.8 12.8 106 99-229 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 1.1E-05 2.4E-10 64.2 7.3 93 96-231 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.9 0.0071 1.5E-07 50.6 8.9 96 93-231 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.5 0.023 5.1E-07 44.2 8.9 89 99-230 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.3 0.37 8E-06 40.4 9.1 32 94-127 14-45 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.1 0.34 7.3E-06 40.6 6.8 24 415-438 101-124 (124)
32 cd05484 retropepsin_like_LTR_2 92.4 0.14 3.1E-06 40.2 3.4 28 97-126 1-28 (91)
33 cd06095 RP_RTVL_H_like Retrope 90.6 2.1 4.6E-05 33.1 8.3 25 100-126 2-26 (86)
34 PF13975 gag-asp_proteas: gag- 89.3 0.63 1.4E-05 34.9 4.1 36 93-130 5-40 (72)
35 PF11925 DUF3443: Protein of u 87.5 5 0.00011 39.7 10.0 52 176-233 83-150 (370)
36 PF08284 RVP_2: Retroviral asp 87.2 1 2.2E-05 38.4 4.6 27 415-441 106-132 (135)
37 COG3577 Predicted aspartyl pro 86.4 2.4 5.2E-05 38.4 6.6 83 92-212 101-183 (215)
38 PF00077 RVP: Retroviral aspar 86.2 1.1 2.3E-05 35.7 4.0 28 98-127 7-34 (100)
39 TIGR03698 clan_AA_DTGF clan AA 84.7 5.5 0.00012 32.3 7.6 23 414-436 85-107 (107)
40 TIGR02281 clan_AA_DTGA clan AA 79.9 3.3 7.1E-05 34.5 4.7 37 279-333 8-44 (121)
41 PF13650 Asp_protease_2: Aspar 79.9 2 4.4E-05 33.0 3.2 21 313-333 11-31 (90)
42 cd05482 HIV_retropepsin_like R 77.6 3 6.4E-05 32.6 3.4 25 100-126 2-26 (87)
43 cd05484 retropepsin_like_LTR_2 75.9 3.3 7.3E-05 32.3 3.4 31 289-334 4-34 (91)
44 PF12384 Peptidase_A2B: Ty3 tr 75.2 8 0.00017 33.8 5.6 26 311-336 45-70 (177)
45 PF13975 gag-asp_proteas: gag- 75.0 5.6 0.00012 29.7 4.3 21 313-333 21-41 (72)
46 cd05483 retropepsin_like_bacte 71.0 6.7 0.00014 30.3 4.1 21 313-333 15-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 64.1 7.9 0.00017 29.9 3.1 21 313-333 11-31 (86)
48 PF02160 Peptidase_A3: Caulifl 63.0 8.8 0.00019 34.9 3.6 52 367-440 66-117 (201)
49 PF00077 RVP: Retroviral aspar 54.9 8.2 0.00018 30.5 1.8 16 313-328 18-33 (100)
50 cd06094 RP_Saci_like RP_Saci_l 54.0 82 0.0018 24.7 7.1 20 311-330 9-28 (89)
51 PF12384 Peptidase_A2B: Ty3 tr 51.3 20 0.00044 31.4 3.7 30 97-126 33-62 (177)
52 cd05481 retropepsin_like_LTR_1 49.0 18 0.00038 28.6 2.8 23 312-334 11-33 (93)
53 PF09668 Asp_protease: Asparty 46.5 12 0.00026 31.3 1.6 36 95-132 23-58 (124)
54 COG3577 Predicted aspartyl pro 45.0 38 0.00083 30.8 4.6 36 279-332 102-137 (215)
55 PF09668 Asp_protease: Asparty 42.8 30 0.00065 29.0 3.4 30 289-333 28-57 (124)
56 COG5550 Predicted aspartyl pro 39.6 19 0.00041 29.9 1.7 22 415-436 96-117 (125)
57 cd05481 retropepsin_like_LTR_1 30.9 38 0.00082 26.6 2.1 23 101-125 3-26 (93)
58 cd06094 RP_Saci_like RP_Saci_l 29.8 2.4E+02 0.0051 22.1 6.2 21 108-128 8-28 (89)
59 TIGR03698 clan_AA_DTGF clan AA 29.1 67 0.0015 25.9 3.3 24 99-122 2-29 (107)
60 cd00303 retropepsin_like Retro 22.3 78 0.0017 22.5 2.5 22 100-123 2-23 (92)
61 KOG0012 DNA damage inducible p 21.5 7.8E+02 0.017 24.6 9.4 27 415-441 320-346 (380)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.4e-77 Score=610.25 Aligned_cols=417 Identities=35% Similarity=0.574 Sum_probs=342.7
Q ss_pred HHHHHHhhhhhccCCCCCCCCceEEEEeecCCCCCCCCCCCCChHHHHHHHHHhhHHHHHHHHhhhhcCCCCCccccccc
Q 035660 8 FYSLILVPIAVAGTPTPSRPSRLIIELIHHDSVVSPYHDPNENAANRIQRAINISIARFAYLQAKVKSYSSNNIIDYQAD 87 (448)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~h~~s~~sp~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~ 87 (448)
++.|+|++..++.+..+ +..+++++|+||++||+|++.++.+..++++++++|+++|.+++.++..+ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-------~~~~~ 75 (431)
T PLN03146 4 LLALCLFSFSELSAAEA-PKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS-------PNDPQ 75 (431)
T ss_pred hHHHHHHHHhhhhhccc-cCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc-------CCccc
Confidence 34445555544443333 55789999999999999998888888899999999999999999754221 11333
Q ss_pred cccccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC-CCC
Q 035660 88 VFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNV-KCN 166 (448)
Q Consensus 88 ~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~-~C~ 166 (448)
......+++|+++|.||||||++.|++||||+++||+|.+|..|..|.++.|||++|+||+.++|+++.|+.+... .|.
T Consensus 76 ~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~ 155 (431)
T PLN03146 76 SDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS 155 (431)
T ss_pred cCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC
Confidence 3444567899999999999999999999999999999999999998889999999999999999999999987754 477
Q ss_pred CCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCCchhhhh----cC
Q 035660 167 FLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLSLVSQL----GS 242 (448)
Q Consensus 167 ~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql----~~ 242 (448)
.++.|.|.+.|+||+.+.|.+++|+|+|++..+..+.++++.|||++.+.+.|....+||||||++++|+++|| .+
T Consensus 156 ~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~ 235 (431)
T PLN03146 156 DENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGG 235 (431)
T ss_pred CCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCC
Confidence 66779999999999978999999999998754444678999999999888766545899999999999999998 35
Q ss_pred ceeEeccCCCCCCCcceeEEeCCCCC---CCCccccccc--cCceEEEEEeEEEEcCEEeecCCccccccccCCCceEEe
Q 035660 243 TFSYCVGNLNDPYYFHNKLVLGHGAR---IEGDSTPLEV--INGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIID 317 (448)
Q Consensus 243 ~FS~~L~~~~~~~~~~g~l~fG~~~~---~~~~~~pl~~--~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiD 317 (448)
+|||||.+..+.....|.|+||+... ..+.|+||.. .+.+|+|+|++|+||++++.++...|. ..+.+++|||
T Consensus 236 ~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiD 313 (431)
T PLN03146 236 KFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIID 313 (431)
T ss_pred cEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEe
Confidence 89999987543333458899996431 2367899942 357999999999999999988777664 2345789999
Q ss_pred ccCccccccHHHHHHHHHHHHHHhhhccccccc-CCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCCCe
Q 035660 318 SGSSATWLVKAGYDALLHEVESLLDMWLTRYRF-DSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPHS 396 (448)
Q Consensus 318 SGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~ 396 (448)
|||++++||+++|++|.++|.+.+... ..... ..+++|+.... ...+|+|+|+|+ |+++.||+++|++...++.
T Consensus 314 SGTt~t~Lp~~~y~~l~~~~~~~~~~~-~~~~~~~~~~~C~~~~~---~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~ 388 (431)
T PLN03146 314 SGTTLTLLPSDFYSELESAVEEAIGGE-RVSDPQGLLSLCYSSTS---DIKLPIITAHFT-GADVKLQPLNTFVKVSEDL 388 (431)
T ss_pred CCccceecCHHHHHHHHHHHHHHhccc-cCCCCCCCCCccccCCC---CCCCCeEEEEEC-CCeeecCcceeEEEcCCCc
Confidence 999999999999999999999887432 11111 12689997321 146999999998 8999999999999987778
Q ss_pred EEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCC
Q 035660 397 FCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELL 446 (448)
Q Consensus 397 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~ 446 (448)
.|+++.... +.||||+.|||++|||||++++|||||+.+|+++
T Consensus 389 ~Cl~~~~~~-------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 389 VCFAMIPTS-------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred EEEEEecCC-------CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 899987542 2599999999999999999999999999999875
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-58 Score=466.02 Aligned_cols=339 Identities=34% Similarity=0.611 Sum_probs=280.9
Q ss_pred ccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC-CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 91 SKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL-DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 91 ~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~-~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
....++|+++|.||||||+|.|++||||+++||+|.+|. .|..+.++.|||++|+||+.+.|.++.|...... |..++
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~~~~ 119 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CSPNS 119 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cccCC
Confidence 345679999999999999999999999999999999999 7987766779999999999999999999998866 77778
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCchhhhh------c
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLSLVSQL------G 241 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s~~~ql------~ 241 (448)
.|.|.+.||||+++.|.+++|+|+|++.. .+.++++.|||+..+.+. .. ...+||||||++.+++++|+ .
T Consensus 120 ~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~ 197 (398)
T KOG1339|consen 120 SCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAI 197 (398)
T ss_pred cCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCc
Confidence 99999999998789999999999999742 257778999999998763 21 45899999999999999998 2
Q ss_pred CceeEeccCCCCCCCcceeEEeCCCCCC----CCccccccccC-ceEEEEEeEEEEcCEEeecCCccccccccCCCceEE
Q 035660 242 STFSYCVGNLNDPYYFHNKLVLGHGARI----EGDSTPLEVIN-GRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVII 316 (448)
Q Consensus 242 ~~FS~~L~~~~~~~~~~g~l~fG~~~~~----~~~~~pl~~~~-~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ii 316 (448)
++||+||.+......+.|.|+||+.+.. .+.|+||.... .+|+|++++|+||++. .+++..+..+ .+++|+
T Consensus 198 ~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~ii 273 (398)
T KOG1339|consen 198 NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAII 273 (398)
T ss_pred eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecC---CCCEEE
Confidence 3599999987543334688999965432 35689994333 4999999999999987 6666666532 589999
Q ss_pred eccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCCCe
Q 035660 317 DSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPHS 396 (448)
Q Consensus 317 DSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~ 396 (448)
||||++++||+++|++|.++|.+.+. .........+.|+...... ..+|.|+|+|++|+.+.|++++|+++..++.
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~--~~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 349 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVS--VVGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG 349 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhhee--ccccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccceEEEECCCC
Confidence 99999999999999999999998740 0111222267999843221 3499999999988999999999999987654
Q ss_pred E-EEEEEecCCCCCCCCCceeeehhhccceEEEEECC-CCEEEEec--CCCC
Q 035660 397 F-CMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIG-GKKLAFER--VDCE 444 (448)
Q Consensus 397 ~-C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~-~~riGfa~--~~C~ 444 (448)
. |++++...+.+ ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 350 ~~Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4 99988876542 36999999999999999999 99999999 7786
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.3e-54 Score=429.62 Aligned_cols=317 Identities=24% Similarity=0.345 Sum_probs=252.5
Q ss_pred ecCCCce-EEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC------------CCCCCC
Q 035660 103 IGQPPIP-QFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNV------------KCNFLN 169 (448)
Q Consensus 103 iGtP~q~-~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~------------~C~~~~ 169 (448)
+|||-.+ +.|++||||+++||||.+ .+|+||..++|+++.|+..... .|.+ +
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-N 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-C
Confidence 5888778 999999999999999985 4688999999999999865422 4533 4
Q ss_pred Cceeeee-eCCCCceeceeEEEEEEEecCCCCc---eeeccEEEEeEEcCCC-CcCCCcceeeecCCCCCchhhhh----
Q 035660 170 QCLYNQT-YIRGPSASGVLATEQLIFKTSDEGK---IRVQDVVFGCGHDNGK-FEDRHLSGVFGLGFSRLSLVSQL---- 240 (448)
Q Consensus 170 ~~~~~~~-Ygdgs~~~G~~~~D~v~~~~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~s~~~ql---- 240 (448)
.|.|... |++|+.+.|.+++|+|+|+..+++. ..++++.|||++++.. .+....+||||||++++|+++||
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 5888765 8899889999999999998644332 4789999999988642 22224899999999999999998
Q ss_pred --cCceeEeccCCCCCCCcceeEEeCCCCC----------CCCcccccccc---CceEEEEEeEEEEcCEEeecCCcccc
Q 035660 241 --GSTFSYCVGNLNDPYYFHNKLVLGHGAR----------IEGDSTPLEVI---NGRYYITLEAISIGGKMLDIDPDIFT 305 (448)
Q Consensus 241 --~~~FS~~L~~~~~~~~~~g~l~fG~~~~----------~~~~~~pl~~~---~~~y~v~l~~i~vg~~~~~~~~~~~~ 305 (448)
.++|||||++.. ...|.|+||+.+. ..+.|+||... +.+|+|+|++|+||++++.+++..+.
T Consensus 147 ~~~~~FS~CL~~~~---~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~ 223 (362)
T cd05489 147 GVARKFALCLPSSP---GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSA 223 (362)
T ss_pred CCCcceEEEeCCCC---CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcc
Confidence 268999998742 2358899996542 46789999433 47999999999999999988777666
Q ss_pred ccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc-CC-cccceeccCC---CccccCCeEEEEEcC-Cc
Q 035660 306 RKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF-DS-WTLCYRGTAS---HDLIGFPAVTFHFAG-GA 379 (448)
Q Consensus 306 ~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~C~~~~~~---~~~~~~P~i~~~f~g-g~ 379 (448)
....+.+++||||||++|+||+++|++|.++|.+++... ..... .. .+.|+..... .....+|+|+|+|+| |+
T Consensus 224 ~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 224 NDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARI-PRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred ccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhccc-CcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCe
Confidence 555567899999999999999999999999999887532 22111 11 3689874321 112579999999996 79
Q ss_pred EEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 380 ELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 380 ~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
+|+|||++|+++..++..|+++....... .+.||||+.|||++|++||++++|||||+.
T Consensus 303 ~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~---~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVKGGVACLAFVDGGSEP---RPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcCCCcEEEEEeeCCCCC---CceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999987778899987654321 147999999999999999999999999974
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.1e-54 Score=419.90 Aligned_cols=287 Identities=36% Similarity=0.638 Sum_probs=234.1
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeee
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQ 175 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~ 175 (448)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------------Ceeee
Confidence 599999999999999999999999999987765 36889
Q ss_pred eeCCCCceeceeEEEEEEEecCCCCce-eeccEEEEeEEcCCCCcCCCcceeeecCCCCCchhhhh----cCceeEeccC
Q 035660 176 TYIRGPSASGVLATEQLIFKTSDEGKI-RVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLSLVSQL----GSTFSYCVGN 250 (448)
Q Consensus 176 ~Ygdgs~~~G~~~~D~v~~~~~~~~~~-~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql----~~~FS~~L~~ 250 (448)
.|++|+.+.|.+++|+|+|++ . .++++.|||+....+.+. ..+||||||+..+++++|+ +++||+||.+
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig~-----~~~~~~~~Fg~~~~~~~~~~-~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLGS-----SDVVPGFAFGCGHDNEGLFG-GAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred EeCCCceEEEEEEEEEEEeCC-----CCccCCEEEECCccCCCccC-CCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 999999779999999999987 4 789999999998877654 6899999999999999997 5799999987
Q ss_pred CCCCCCcceeEEeCCCCC--CCCcccccccc---CceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccc
Q 035660 251 LNDPYYFHNKLVLGHGAR--IEGDSTPLEVI---NGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWL 325 (448)
Q Consensus 251 ~~~~~~~~g~l~fG~~~~--~~~~~~pl~~~---~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~l 325 (448)
... ...|.|+||+.+. ..+.|+|+... +.+|.|+|++|+||++.+.+++... ....+||||||++++|
T Consensus 113 ~~~--~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTt~~~l 185 (299)
T cd05472 113 RSS--SSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF-----GAGGVIIDSGTVITRL 185 (299)
T ss_pred CCC--CCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc-----CCCCeEEeCCCcceec
Confidence 431 2348899996543 47789998433 4799999999999999886543222 2578999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcccccccCC-cccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEe-CCCeEEEEEEe
Q 035660 326 VKAGYDALLHEVESLLDMWLTRYRFDS-WTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQR-WPHSFCMAVLP 403 (448)
Q Consensus 326 p~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~-~~~~~C~~~~~ 403 (448)
|+++|++|.+++.+.+... ....... +..|+...... ...+|+|+|+|++|++++||+++|++.. ..+..|+++..
T Consensus 186 p~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~C~~~~~~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~ 263 (299)
T cd05472 186 PPSAYAALRDAFRAAMAAY-PRAPGFSILDTCYDLSGFR-SVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAG 263 (299)
T ss_pred CHHHHHHHHHHHHHHhccC-CCCCCCCCCCccCcCCCCc-CCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeC
Confidence 9999999999998876321 1111122 34698643221 2579999999987899999999999943 34678998876
Q ss_pred cCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCC
Q 035660 404 SFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDC 443 (448)
Q Consensus 404 ~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C 443 (448)
.... .+.+|||+.|||++|+|||++++|||||+++|
T Consensus 264 ~~~~----~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 264 TSDD----GGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCC----CCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 5322 13699999999999999999999999999999
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.7e-53 Score=434.42 Aligned_cols=304 Identities=19% Similarity=0.266 Sum_probs=242.0
Q ss_pred ccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 91 SKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 91 ~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
...+.+|+++|.||||||+|.|++||||+++||+|..|..|..+.++.|||++|+||+.+++.. ..
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~--------------~~ 180 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD--------------ES 180 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC--------------cc
Confidence 4577899999999999999999999999999999999987444478999999999999853221 12
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCc---------hhhh
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLS---------LVSQ 239 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s---------~~~q 239 (448)
..+.+.||+|+ ..|.+++|+|+|++ +.++++.|||++...+ .|. ...|||||||++.++ ++.+
T Consensus 181 ~~~~i~YGsGs-~~G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~ 254 (482)
T PTZ00165 181 AETYIQYGTGE-CVLALGKDTVKIGG-----LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDN 254 (482)
T ss_pred ceEEEEeCCCc-EEEEEEEEEEEECC-----EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHH
Confidence 25779999998 78999999999998 8999999999998754 343 348999999998752 3333
Q ss_pred h-------cCceeEeccCCCCCCCcceeEEeCCCCC------CCCccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 240 L-------GSTFSYCVGNLNDPYYFHNKLVLGHGAR------IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 240 l-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~------~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
| .++||+||.+..+ ..|.|+||+.+. ..+.|+|+ ....||.|++++|+||++.+....
T Consensus 255 l~~qgli~~~~FS~yL~~~~~---~~G~l~fGGiD~~~~~~~g~i~~~Pv-~~~~yW~i~l~~i~vgg~~~~~~~----- 325 (482)
T PTZ00165 255 IKKQNLLKRNIFSFYMSKDLN---QPGSISFGSADPKYTLEGHKIWWFPV-ISTDYWEIEVVDILIDGKSLGFCD----- 325 (482)
T ss_pred HHHcCCcccceEEEEeccCCC---CCCEEEeCCcCHHHcCCCCceEEEEc-cccceEEEEeCeEEECCEEeeecC-----
Confidence 3 5799999976322 247899995431 23567787 567899999999999998776531
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcC--C--cEEE
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAG--G--AELV 382 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~g--g--~~~~ 382 (448)
+...+|+||||+++++|++++++|.+++... .+|+. ...+|+|+|+|+| | .++.
T Consensus 326 ---~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~------~~~lP~itf~f~g~~g~~v~~~ 383 (482)
T PTZ00165 326 ---RKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN------KDSLPRISFVLEDVNGRKIKFD 383 (482)
T ss_pred ---CceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc------cccCCceEEEECCCCCceEEEE
Confidence 1568999999999999999999999887432 47986 3579999999973 2 3899
Q ss_pred ECCCceEEEe----CCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCC
Q 035660 383 LDVDSLFFQR----WPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCEL 445 (448)
Q Consensus 383 l~~~~y~~~~----~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~ 445 (448)
|+|++|+++. ..+..|+..+...+.+.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 384 l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 384 MDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred EchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 9999999974 23568985444433222223579999999999999999999999999999875
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=5.6e-54 Score=424.31 Aligned_cols=295 Identities=22% Similarity=0.434 Sum_probs=238.1
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceee
Q 035660 95 SLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYN 174 (448)
Q Consensus 95 ~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~ 174 (448)
+.|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.++|++..|.. ...|. ++.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~-~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCL-NNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCC-CCcCcEE
Confidence 58999999999999999999999999999999999998777899999999999999999999954 23454 4679999
Q ss_pred eeeCCCCceeceeEEEEEEEecCCCC--ceeeccEEEEeEEcCCCCcC-CCcceeeecCCCCCc--------hhhhh---
Q 035660 175 QTYIRGPSASGVLATEQLIFKTSDEG--KIRVQDVVFGCGHDNGKFED-RHLSGVFGLGFSRLS--------LVSQL--- 240 (448)
Q Consensus 175 ~~Ygdgs~~~G~~~~D~v~~~~~~~~--~~~~~~~~fg~~~~~~~~~~-~~~~GilGLg~~~~s--------~~~ql--- 240 (448)
+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+.|. ...+||||||+...+ +..|.
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~ 158 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKL 158 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccc
Confidence 99999987899999999999873211 01123578999988776543 348999999998753 11221
Q ss_pred --cCceeEeccCCCCCCCcceeEEeCCCCC--------------CCCccccccccCceEEEEEeEEEEcCEEeecCCccc
Q 035660 241 --GSTFSYCVGNLNDPYYFHNKLVLGHGAR--------------IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIF 304 (448)
Q Consensus 241 --~~~FS~~L~~~~~~~~~~g~l~fG~~~~--------------~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 304 (448)
.++||+||.+. .|.|+||+.+. ..+.|+|+ ..+.+|.|.+++|+|+++.....
T Consensus 159 ~~~~~FS~~l~~~------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~-~~~~~y~v~l~~i~vg~~~~~~~---- 227 (326)
T cd06096 159 KKDKIFSICLSED------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPI-TRKYYYYVKLEGLSVYGTTSNSG---- 227 (326)
T ss_pred cCCceEEEEEcCC------CeEEEECccChhhhcccccccccccCCceEEec-cCCceEEEEEEEEEEccccccee----
Confidence 28999999862 37899996442 34567887 44589999999999998761111
Q ss_pred cccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEEC
Q 035660 305 TRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLD 384 (448)
Q Consensus 305 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~ 384 (448)
......+||||||++++||+++|++|.+++ |+|+|+|++|++++|+
T Consensus 228 ---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~~i~ 273 (326)
T cd06096 228 ---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKIDWK 273 (326)
T ss_pred ---cccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEEEEC
Confidence 012678999999999999999999887654 7999999878999999
Q ss_pred CCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCC
Q 035660 385 VDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCE 444 (448)
Q Consensus 385 ~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~ 444 (448)
|++|++...+...|+.+... + +.+|||++|||++|+|||++++|||||+++|.
T Consensus 274 p~~y~~~~~~~~c~~~~~~~-~------~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 274 PSSYLYKKESFWCKGGEKSV-S------NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHHhccccCCceEEEEEecC-C------CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999987655445554432 2 35999999999999999999999999999994
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-53 Score=421.26 Aligned_cols=297 Identities=19% Similarity=0.336 Sum_probs=236.7
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC----CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD----CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFL 168 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~----C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~ 168 (448)
.+.+|+++|.||||||++.|++||||+++||+|..|.. |. .++.|||++|+|++.
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~------------------- 61 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACW--LHHKYNSSKSSTYVK------------------- 61 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcccc--CcCcCCcccCcceee-------------------
Confidence 46799999999999999999999999999999999973 65 568999999999987
Q ss_pred CCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch------hhhh
Q 035660 169 NQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL------VSQL 240 (448)
Q Consensus 169 ~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~------~~ql 240 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .|. ...+||||||++.++. +++|
T Consensus 62 ~~~~~~i~Yg~G~-~~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 62 NGTEFAIQYGSGS-LSGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred CCcEEEEEECCcE-EEEEEeeeEEEECC-----EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 4689999999998 79999999999998 7899999999988765 232 2479999999987653 3343
Q ss_pred -------cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEeecCCccccccc
Q 035660 241 -------GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKT 308 (448)
Q Consensus 241 -------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 308 (448)
+++||+||.+..+. ...|.|+||+ .|. .+.|+|+ ..+.+|.|++++|+||++.....
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~-~~~G~l~~Gg-~d~~~~~g~l~~~~~-~~~~~w~v~l~~i~vg~~~~~~~-------- 204 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDA-QPGGELMLGG-TDPKYYTGDLHYVNV-TRKAYWQIHMDQVDVGSGLTLCK-------- 204 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCC-CCCCEEEECc-cCHHHcCCceEEEEc-CcceEEEEEeeEEEECCeeeecC--------
Confidence 57899999864322 2347899995 444 3456666 45689999999999998643211
Q ss_pred cCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCce
Q 035660 309 WDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSL 388 (448)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y 388 (448)
....+||||||+++++|++++++|.+++.+. ........++|+. ...+|+|+|+|+ |+.++|||++|
T Consensus 205 -~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~C~~------~~~~P~i~f~fg-g~~~~l~~~~y 271 (325)
T cd05490 205 -GGCEAIVDTGTSLITGPVEEVRALQKAIGAV-----PLIQGEYMIDCEK------IPTLPVISFSLG-GKVYPLTGEDY 271 (325)
T ss_pred -CCCEEEECCCCccccCCHHHHHHHHHHhCCc-----cccCCCEEecccc------cccCCCEEEEEC-CEEEEEChHHe
Confidence 1468999999999999999999999988542 1122223689987 357999999997 89999999999
Q ss_pred EEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 389 FFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 389 ~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
+++... ...|++.+...+.+....+.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 272 ILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 988643 3579965543322111124799999999999999999999999996
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.7e-53 Score=415.04 Aligned_cols=293 Identities=23% Similarity=0.369 Sum_probs=234.6
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceee
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYN 174 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~ 174 (448)
|+++|.||||||+++|+|||||+++||+|..|.. |. .++.|||++|+|++. ..|.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACT--KHNRFQPSESSTYVS-------------------NGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccC--ccceECCCCCccccc-------------------CCcEEE
Confidence 8999999999999999999999999999999985 65 678999999999987 578999
Q ss_pred eeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch------hhhh------
Q 035660 175 QTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL------VSQL------ 240 (448)
Q Consensus 175 ~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~------~~ql------ 240 (448)
+.|++|+ +.|.+++|+|+|++ +.++++.|||+....+ .|. ...+||||||++.++. +++|
T Consensus 60 i~Yg~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 60 IQYGTGS-LTGIIGIDQVTVEG-----ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred EEeCCcE-EEEEeeecEEEECC-----EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 9999997 79999999999988 8999999999987654 232 3589999999987652 3333
Q ss_pred -cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCceE
Q 035660 241 -GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVI 315 (448)
Q Consensus 241 -~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~i 315 (448)
.++||+||.+..+. ...|.|+||+.+. ..+.|+|+ ....+|.|++++|+||++.+..+ ....+|
T Consensus 134 ~~~~FS~~L~~~~~~-~~~g~l~fGg~d~~~~~g~l~~~pi-~~~~~w~v~l~~i~v~g~~~~~~---------~~~~ai 202 (316)
T cd05486 134 ELPMFSVYMSRNPNS-ADGGELVFGGFDTSRFSGQLNWVPV-TVQGYWQIQLDNIQVGGTVIFCS---------DGCQAI 202 (316)
T ss_pred CCCEEEEEEccCCCC-CCCcEEEEcccCHHHcccceEEEEC-CCceEEEEEeeEEEEecceEecC---------CCCEEE
Confidence 46899999874322 2347899995432 24567787 55789999999999999876432 146899
Q ss_pred EeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeC--
Q 035660 316 IDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRW-- 393 (448)
Q Consensus 316 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~-- 393 (448)
|||||+++++|++++++|.+++.+.. ......++|+. ...+|+|+|+|+ |++++|+|++|++...
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~~~~~------~~~~~~~~C~~------~~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYIGATA------TDGEYGVDCST------LSLMPSVTFTIN-GIPYSLSPQAYTLEDQSD 269 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHhCCcc------cCCcEEEeccc------cccCCCEEEEEC-CEEEEeCHHHeEEecccC
Confidence 99999999999999999988775321 11112568986 357999999997 8999999999998752
Q ss_pred CCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 394 PHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 394 ~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
....|++.+...+.....++.||||++|||++|+|||.+++|||||+
T Consensus 270 ~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 270 GGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 35689865543321111124799999999999999999999999996
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-52 Score=412.99 Aligned_cols=291 Identities=19% Similarity=0.327 Sum_probs=239.8
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCce
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCL 172 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~ 172 (448)
.+..|+++|.||||||++.|+|||||+++||+|..|..|..+.++.|||++|+|++. ..+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~-------------------~~~~ 67 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQS-------------------TGQP 67 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceee-------------------CCcE
Confidence 368999999999999999999999999999999999875445789999999999987 4689
Q ss_pred eeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCc------hhhhh----
Q 035660 173 YNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLS------LVSQL---- 240 (448)
Q Consensus 173 ~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s------~~~ql---- 240 (448)
+.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+.+. ...+||||||+..++ ++.||
T Consensus 68 ~~~~yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g 141 (317)
T cd05478 68 LSIQYGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQG 141 (317)
T ss_pred EEEEECCce-EEEEEeeeEEEECC-----EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCC
Confidence 999999998 79999999999998 8899999999987766432 237999999987654 55555
Q ss_pred ---cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCC
Q 035660 241 ---GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNG 312 (448)
Q Consensus 241 ---~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~ 312 (448)
+++||+||.+... ..|.|+||+ .|. .+.|+|+ ..+.+|.|.+++|+||++.+... .+.
T Consensus 142 ~i~~~~FS~~L~~~~~---~~g~l~~Gg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~v~v~g~~~~~~---------~~~ 207 (317)
T cd05478 142 LVSQDLFSVYLSSNGQ---QGSVVTFGG-IDPSYYTGSLNWVPV-TAETYWQITVDSVTINGQVVACS---------GGC 207 (317)
T ss_pred CCCCCEEEEEeCCCCC---CCeEEEEcc-cCHHHccCceEEEEC-CCCcEEEEEeeEEEECCEEEccC---------CCC
Confidence 4799999997432 247899995 443 3456676 45789999999999999987532 146
Q ss_pred ceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEe
Q 035660 313 GVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQR 392 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~ 392 (448)
.+||||||++++||+++|++|.+++.+.... ......+|+. ..++|.|+|+|+ |++++|||++|+.+.
T Consensus 208 ~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~-----~~~~~~~C~~------~~~~P~~~f~f~-g~~~~i~~~~y~~~~ 275 (317)
T cd05478 208 QAIVDTGTSLLVGPSSDIANIQSDIGASQNQ-----NGEMVVNCSS------ISSMPDVVFTIN-GVQYPLPPSAYILQD 275 (317)
T ss_pred EEEECCCchhhhCCHHHHHHHHHHhCCcccc-----CCcEEeCCcC------cccCCcEEEEEC-CEEEEECHHHheecC
Confidence 8999999999999999999999988654311 1111568986 347999999997 899999999999875
Q ss_pred CCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 393 WPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
...|++.+...+.. +.||||++|||++|+|||++++||||||
T Consensus 276 --~~~C~~~~~~~~~~----~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLG----ELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCC----CeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56899766554321 3699999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.1e-52 Score=410.76 Aligned_cols=298 Identities=20% Similarity=0.359 Sum_probs=238.4
Q ss_pred cceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcee
Q 035660 94 FSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLY 173 (448)
Q Consensus 94 ~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~ 173 (448)
+..|+++|.||||||++.|++||||+++||+|..|..|....++.|||++|+|++. ..|.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~-------------------~~~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYST-------------------NGETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceE-------------------CCcEE
Confidence 35799999999999999999999999999999999863323678999999999987 57899
Q ss_pred eeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-c-CCCcceeeecCCCC------Cchhhhh-----
Q 035660 174 NQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGFSR------LSLVSQL----- 240 (448)
Q Consensus 174 ~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~------~s~~~ql----- 240 (448)
++.|++|+ +.|.+++|+|+|++ +.++++.|||++...+. | ....+||||||++. .++++||
T Consensus 62 ~~~Yg~Gs-~~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~ 135 (318)
T cd05477 62 SLQYGSGS-LTGIFGYDTVTVQG-----IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNL 135 (318)
T ss_pred EEEECCcE-EEEEEEeeEEEECC-----EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCC
Confidence 99999998 79999999999998 89999999999986542 2 23479999999864 3466676
Q ss_pred --cCceeEeccCCCCCCCcceeEEeCCCC----CCCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCce
Q 035660 241 --GSTFSYCVGNLNDPYYFHNKLVLGHGA----RIEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGV 314 (448)
Q Consensus 241 --~~~FS~~L~~~~~~~~~~g~l~fG~~~----~~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ 314 (448)
.++||+||.+.... ..|.|+||+.+ ...+.|+|+ ....+|.|++++|+|+++++.+.. .+..+
T Consensus 136 i~~~~FS~~L~~~~~~--~~g~l~fGg~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~--------~~~~~ 204 (318)
T cd05477 136 LQAPIFSFYLSGQQGQ--QGGELVFGGVDNNLYTGQIYWTPV-TSETYWQIGIQGFQINGQATGWCS--------QGCQA 204 (318)
T ss_pred cCCCEEEEEEcCCCCC--CCCEEEEcccCHHHcCCceEEEec-CCceEEEEEeeEEEECCEEecccC--------CCcee
Confidence 47999999874322 23789999543 224567787 557899999999999998875321 14579
Q ss_pred EEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCC
Q 035660 315 IIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWP 394 (448)
Q Consensus 315 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~ 394 (448)
||||||++++||+++|++|++++.+.... ......+|+. ...+|+|+|+|+ |+++.||+++|+.+.
T Consensus 205 iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-----~~~~~~~C~~------~~~~p~l~~~f~-g~~~~v~~~~y~~~~-- 270 (318)
T cd05477 205 IVDTGTSLLTAPQQVMSTLMQSIGAQQDQ-----YGQYVVNCNN------IQNLPTLTFTIN-GVSFPLPPSAYILQN-- 270 (318)
T ss_pred eECCCCccEECCHHHHHHHHHHhCCcccc-----CCCEEEeCCc------cccCCcEEEEEC-CEEEEECHHHeEecC--
Confidence 99999999999999999999998655321 1112578987 357999999997 899999999999875
Q ss_pred CeEEEEEEecCCCC-CCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 395 HSFCMAVLPSFVNG-ENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 395 ~~~C~~~~~~~~~~-~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
...|+..+.....+ ....+.||||+.|||++|+|||++++|||||++
T Consensus 271 ~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 45798444322111 011246999999999999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.5e-51 Score=406.07 Aligned_cols=293 Identities=22% Similarity=0.398 Sum_probs=237.4
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
.+..|+++|.||||+|++.|++||||+++||+|..|.. |. .++.|+|++|+|++. ..
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~--~~~~y~~~~Sst~~~-------------------~~ 65 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACF--LHSKYDSSASSTYKA-------------------NG 65 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccC--CcceECCCCCcceee-------------------CC
Confidence 45789999999999999999999999999999999985 65 568999999999887 57
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCchhh------hh--
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLSLVS------QL-- 240 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s~~~------ql-- 240 (448)
|.+.+.|++|+ +.|.+++|+|++++ +.++++.|||+....+. |. ...+||||||++..+... +|
T Consensus 66 ~~~~~~y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 66 TEFKIQYGSGS-LEGFVSQDTLSIGD-----LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CEEEEEECCce-EEEEEEEeEEEECC-----EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 89999999998 79999999999987 88999999999877653 22 247999999998776432 22
Q ss_pred -----cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 -----GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 -----~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
.++||+||.+... ..|.|+||+.+. ..+.|+|+ ....+|.|++++|+||++.+..+ +
T Consensus 140 qg~i~~~~FS~~L~~~~~---~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~vg~~~~~~~----------~ 205 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEE---DGGEATFGGIDESRFTGKITWLPV-RRKAYWEVELEKIGLGDEELELE----------N 205 (320)
T ss_pred cCCCCCCEEEEEecCCCC---CCcEEEECCcCHHHcCCceEEEeC-CcCcEEEEEeCeEEECCEEeccC----------C
Confidence 5789999998532 347899995431 24567787 45689999999999999877543 4
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEE
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQ 391 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 391 (448)
..++|||||++++||++++++|.+++++... .......+|+. ...+|.|+|+|+ |++++|||++|+++
T Consensus 206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~~~ 273 (320)
T cd05488 206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSK------VDSLPDLTFNFD-GYNFTLGPFDYTLE 273 (320)
T ss_pred CeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeeccc------cccCCCEEEEEC-CEEEEECHHHheec
Confidence 6899999999999999999999988854321 11112468986 346999999997 89999999999986
Q ss_pred eCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 392 RWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
. ...|++.+...+.....++.||||+.|||++|+|||++++|||||+
T Consensus 274 ~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 274 V--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred C--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 4 3479977665432211124699999999999999999999999996
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.7e-51 Score=406.75 Aligned_cols=300 Identities=21% Similarity=0.343 Sum_probs=236.8
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCC--CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDC--SQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C--~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+..|+++|.||||+|++.|++||||+++||+|..|..| ....++.|||++|+|++. .
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~-------------------~ 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKE-------------------N 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeE-------------------C
Confidence 3467899999999999999999999999999999888752 122678999999999987 5
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-Cc-CCCcceeeecCCCCCc----------hh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FE-DRHLSGVFGLGFSRLS----------LV 237 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------~~ 237 (448)
.|.|++.|++|+ +.|.+++|+|+|++ +.+ ++.||++..... .| ....+||||||++..+ +.
T Consensus 65 ~~~~~~~Yg~g~-~~G~~~~D~v~~g~-----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 137 (326)
T cd05487 65 GTEFTIHYASGT-VKGFLSQDIVTVGG-----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIM 137 (326)
T ss_pred CEEEEEEeCCce-EEEEEeeeEEEECC-----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHH
Confidence 799999999998 89999999999987 566 478999987543 22 2348999999997665 34
Q ss_pred hh--h-cCceeEeccCCCCCCCcceeEEeCCCCCCCCccccc----cccCceEEEEEeEEEEcCEEeecCCccccccccC
Q 035660 238 SQ--L-GSTFSYCVGNLNDPYYFHNKLVLGHGARIEGDSTPL----EVINGRYYITLEAISIGGKMLDIDPDIFTRKTWD 310 (448)
Q Consensus 238 ~q--l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~~~~~pl----~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~ 310 (448)
+| + +++||+||.+... ....|.|+|| +.|.+++.+++ ...+.+|.|++++|+||++.+....
T Consensus 138 ~qg~i~~~~FS~~L~~~~~-~~~~G~l~fG-g~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~--------- 206 (326)
T cd05487 138 SQGVLKEDVFSVYYSRDSS-HSLGGEIVLG-GSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCED--------- 206 (326)
T ss_pred hcCCCCCCEEEEEEeCCCC-CCCCcEEEEC-CcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCC---------
Confidence 44 2 6799999987432 2235889999 45555544443 1457899999999999998765321
Q ss_pred CCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEE
Q 035660 311 NGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFF 390 (448)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~ 390 (448)
+..+||||||++++||+++++++++++++... ......+|+. ...+|+|+|+|+ |..++||+++|++
T Consensus 207 ~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~------~~~~P~i~f~fg-g~~~~v~~~~yi~ 273 (326)
T cd05487 207 GCTAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNE------VPTLPDISFHLG-GKEYTLSSSDYVL 273 (326)
T ss_pred CCEEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEeccc------cCCCCCEEEEEC-CEEEEeCHHHhEE
Confidence 46899999999999999999999999865421 1122578987 356899999997 8999999999999
Q ss_pred EeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 391 QRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 391 ~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
+..+ +..|+..+...+.....++.||||++|||++|+|||++++|||||++
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 8654 56798655443221111247999999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.5e-51 Score=403.82 Aligned_cols=287 Identities=24% Similarity=0.377 Sum_probs=230.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC---CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL---DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFL 168 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~---~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~ 168 (448)
..+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+|++.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~------------------- 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKK------------------- 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCccc-------------------
Confidence 45689999999999999999999999999999999996 586 568999999999987
Q ss_pred CCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch----------
Q 035660 169 NQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL---------- 236 (448)
Q Consensus 169 ~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~---------- 236 (448)
..+.+.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .|. ...+||||||+...+.
T Consensus 65 ~~~~~~i~Yg~G~-~~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 138 (317)
T cd06098 65 NGTSASIQYGTGS-ISGFFSQDSVTVGD-----LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 138 (317)
T ss_pred CCCEEEEEcCCce-EEEEEEeeEEEECC-----EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHH
Confidence 4678999999998 79999999999988 7999999999987654 232 3489999999987653
Q ss_pred hhh--h-cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEeecCCccccccc
Q 035660 237 VSQ--L-GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKT 308 (448)
Q Consensus 237 ~~q--l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 308 (448)
.+| + .++||+||.+.... ...|.|+||+ .|. ++.|+|+ ....+|.|++++|+||++.+.....
T Consensus 139 ~~qg~i~~~~FS~~L~~~~~~-~~~G~l~fGg-~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~~------ 209 (317)
T cd06098 139 VEQGLVKEPVFSFWLNRNPDE-EEGGELVFGG-VDPKHFKGEHTYVPV-TRKGYWQFEMGDVLIGGKSTGFCAG------ 209 (317)
T ss_pred HhcCCCCCCEEEEEEecCCCC-CCCcEEEECc-cChhhcccceEEEec-CcCcEEEEEeCeEEECCEEeeecCC------
Confidence 223 2 56999999864322 2347899995 544 3467777 4568999999999999988754321
Q ss_pred cCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCce
Q 035660 309 WDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSL 388 (448)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y 388 (448)
...+||||||+++++|+++++++. ...+|+. ...+|+|+|+|+ |+.++|+|++|
T Consensus 210 --~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~------~~~~P~i~f~f~-g~~~~l~~~~y 263 (317)
T cd06098 210 --GCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNS------LSSMPNVSFTIG-GKTFELTPEQY 263 (317)
T ss_pred --CcEEEEecCCcceeCCHHHHHhhh-----------------ccCCccc------cccCCcEEEEEC-CEEEEEChHHe
Confidence 468999999999999998776553 1368986 357999999997 89999999999
Q ss_pred EEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 389 FFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 389 ~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
+++..+ ...|++.+...+.....++.||||+.|||++|+|||++++|||||+
T Consensus 264 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 264 ILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 987654 3579965543221111124799999999999999999999999995
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.7e-51 Score=404.56 Aligned_cols=298 Identities=20% Similarity=0.341 Sum_probs=238.5
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC----CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD----CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNF 167 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~----C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~ 167 (448)
..+..|+++|.||||+|++.|++||||+++||+|..|.. |. .++.|||++|+|++.
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~------------------ 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKK------------------ 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEE------------------
Confidence 456899999999999999999999999999999999973 64 468899999999987
Q ss_pred CCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch------hhh
Q 035660 168 LNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL------VSQ 239 (448)
Q Consensus 168 ~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~------~~q 239 (448)
..|.|.+.|++|+ +.|.+++|+++|++ ..++++.|||+....+ .|. ...+||||||++.++. +.|
T Consensus 67 -~~~~~~i~Y~~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 67 -NGTEFAIQYGSGS-LSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred -CCeEEEEEECCce-EEEEEecCcEEECC-----EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHH
Confidence 5789999999998 89999999999988 7899999999987654 232 3479999999987663 334
Q ss_pred h-------cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccccc
Q 035660 240 L-------GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKT 308 (448)
Q Consensus 240 l-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 308 (448)
| ++.||+||.+..+. ...|.|+||+.+. ..+.|+|+ ..+.+|.|++++|+|+++.+..
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~~~~i~v~~~~~~~--------- 208 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSA-KEGGELILGGSDPKHYTGNFTYLPV-TRKGYWQFKMDSVSVGEGEFCS--------- 208 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCC-CCCcEEEEcccCHHHcccceEEEEc-CCceEEEEEeeEEEECCeeecC---------
Confidence 3 57999999874332 2348899995432 34567887 5578999999999999987532
Q ss_pred cCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCce
Q 035660 309 WDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSL 388 (448)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y 388 (448)
.+..+||||||++++||++++++|.+++.+.. . ......++|+. ..++|+|+|+|+ |++++||+++|
T Consensus 209 -~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---~--~~~~~~~~C~~------~~~~p~i~f~fg-g~~~~i~~~~y 275 (329)
T cd05485 209 -GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---I--IGGEYMVNCSA------IPSLPDITFVLG-GKSFSLTGKDY 275 (329)
T ss_pred -CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---c--cCCcEEEeccc------cccCCcEEEEEC-CEEeEEChHHe
Confidence 14689999999999999999999998886431 1 11122679986 356899999997 89999999999
Q ss_pred EEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 389 FFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 389 ~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
+++..+ ..+|+..+...+......+.||||++|||++|+|||++++|||||+
T Consensus 276 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 276 VLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 998653 4679965443221111124799999999999999999999999985
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-50 Score=406.89 Aligned_cols=312 Identities=19% Similarity=0.276 Sum_probs=233.6
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceee
Q 035660 95 SLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYN 174 (448)
Q Consensus 95 ~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~ 174 (448)
.+|+++|.||||+|++.|+|||||+++||+|.+|.. .++.|||++|+|++. ..|.|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~-------------------~~~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRD-------------------LGKGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCccc-------------------CCceEE
Confidence 469999999999999999999999999999998743 467899999999988 478999
Q ss_pred eeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCC------------chhhhh
Q 035660 175 QTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRL------------SLVSQL 240 (448)
Q Consensus 175 ~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~------------s~~~ql 240 (448)
+.|++|+ +.|.+++|+|+|++.. ...+ .+.|++.....+.+. ...+||||||++.+ ++++|.
T Consensus 59 i~Yg~Gs-~~G~~~~D~v~ig~~~--~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~ 134 (364)
T cd05473 59 VPYTQGS-WEGELGTDLVSIPKGP--NVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQT 134 (364)
T ss_pred EEECcce-EEEEEEEEEEEECCCC--ccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhcc
Confidence 9999998 7999999999998521 0111 234566665555432 24799999999876 344553
Q ss_pred --cCceeEeccCC--C--C--CCCcceeEEeCCCC----CCCCccccccccCceEEEEEeEEEEcCEEeecCCccccccc
Q 035660 241 --GSTFSYCVGNL--N--D--PYYFHNKLVLGHGA----RIEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKT 308 (448)
Q Consensus 241 --~~~FS~~L~~~--~--~--~~~~~g~l~fG~~~----~~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 308 (448)
.++||++|... . . .....|.|+||+.+ ..++.|+|+ ....+|.|++++|+||++.+.++...+.
T Consensus 135 ~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~-~~~~~~~v~l~~i~vg~~~~~~~~~~~~--- 210 (364)
T cd05473 135 GIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPI-REEWYYEVIILKLEVGGQSLNLDCKEYN--- 210 (364)
T ss_pred CCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEec-CcceeEEEEEEEEEECCEeccccccccc---
Confidence 46899977431 1 1 11235889999543 224578888 4568999999999999998876543331
Q ss_pred cCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccC----CcccceeccCCCccccCCeEEEEEcCC-----c
Q 035660 309 WDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFD----SWTLCYRGTASHDLIGFPAVTFHFAGG-----A 379 (448)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~C~~~~~~~~~~~~P~i~~~f~gg-----~ 379 (448)
...+||||||++++||+++|++|.+++.++.... ..... ...+|+..... ....+|+|+|+|+|+ .
T Consensus 211 --~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~C~~~~~~-~~~~~P~i~~~f~g~~~~~~~ 285 (364)
T cd05473 211 --YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE--DFPDGFWLGSQLACWQKGTT-PWEIFPKISIYLRDENSSQSF 285 (364)
T ss_pred --CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc--cCCccccCcceeecccccCc-hHhhCCcEEEEEccCCCCceE
Confidence 2479999999999999999999999998875321 11111 13689863211 123699999999842 4
Q ss_pred EEEECCCceEEEeCC---CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 380 ELVLDVDSLFFQRWP---HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 380 ~~~l~~~~y~~~~~~---~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
+++|||++|+..... +..|+++...... +.||||+.|||++|+|||++++|||||+++|.+.+
T Consensus 286 ~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~-----~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 286 RITILPQLYLRPVEDHGTQLDCYKFAISQST-----NGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred EEEECHHHhhhhhccCCCcceeeEEeeecCC-----CceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 789999999986432 4679864322211 35999999999999999999999999999999864
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.4e-50 Score=390.23 Aligned_cols=256 Identities=29% Similarity=0.510 Sum_probs=211.6
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCceEEEcC-CCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcee
Q 035660 95 SLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR-PCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLY 173 (448)
Q Consensus 95 ~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~-~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~ 173 (448)
++|+++|.||||||++.|++||||+++||+|. +|..| .|.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------------~c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------------QCDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------cCcc
Confidence 47999999999999999999999999999984 67666 3579
Q ss_pred eeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCc---CCCcceeeecCCCCCchhhhh------cCce
Q 035660 174 NQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFE---DRHLSGVFGLGFSRLSLVSQL------GSTF 244 (448)
Q Consensus 174 ~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~s~~~ql------~~~F 244 (448)
++.|+|++.+.|.+++|+|+|+..++ ...++++.|||+..+.+.+ ....+||||||+++.++++|| +++|
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~-~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCC-CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 99999887899999999999975322 2467899999998776532 124799999999999999998 2689
Q ss_pred eEeccCCCCCCCcceeEEeCCCC--CCCCcccccccc--CceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccC
Q 035660 245 SYCVGNLNDPYYFHNKLVLGHGA--RIEGDSTPLEVI--NGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGS 320 (448)
Q Consensus 245 S~~L~~~~~~~~~~g~l~fG~~~--~~~~~~~pl~~~--~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGT 320 (448)
|+||++. +.|.|+||+.. ...+.|+|+... ..+|.|++.+|+||++.+.. ....+||||||
T Consensus 122 s~~l~~~-----~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGT 186 (273)
T cd05475 122 GHCLSSN-----GGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGS 186 (273)
T ss_pred EEEccCC-----CCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC----------CCceEEEECCC
Confidence 9999862 24789999532 235789998433 57999999999999985421 25689999999
Q ss_pred ccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCC---cEEEECCCceEEEeCCCeE
Q 035660 321 SATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGG---AELVLDVDSLFFQRWPHSF 397 (448)
Q Consensus 321 t~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~y~~~~~~~~~ 397 (448)
++++||+++| +|+|+|+|+++ ++++|||++|++...++..
T Consensus 187 t~t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~ 229 (273)
T cd05475 187 SYTYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNV 229 (273)
T ss_pred ceEEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCE
Confidence 9999999866 57899999843 7999999999998766778
Q ss_pred EEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCC
Q 035660 398 CMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDC 443 (448)
Q Consensus 398 C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C 443 (448)
|++++...+... .+.||||+.|||++|+|||++++|||||+++|
T Consensus 230 Cl~~~~~~~~~~--~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 230 CLGILNGSEIGL--GNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEecCCCcCC--CceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 999987654221 24799999999999999999999999999999
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.9e-50 Score=408.13 Aligned_cols=292 Identities=18% Similarity=0.296 Sum_probs=230.9
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCc
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQC 171 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~ 171 (448)
..+..|+++|+||||||++.|++||||+++||+|..|..|..+.++.|||++|+|++. .++
T Consensus 135 ~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~-------------------~~~ 195 (453)
T PTZ00147 135 LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEK-------------------DGT 195 (453)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEE-------------------CCC
Confidence 4567999999999999999999999999999999999864445778999999999987 478
Q ss_pred eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC---cC-CCcceeeecCCCCCch------hhhh-
Q 035660 172 LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF---ED-RHLSGVFGLGFSRLSL------VSQL- 240 (448)
Q Consensus 172 ~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~---~~-~~~~GilGLg~~~~s~------~~ql- 240 (448)
.+++.|++|+ +.|.+++|+|+|++ ++++ ..|+|+.+..+. +. ...+||||||++.++. +.+|
T Consensus 196 ~f~i~Yg~Gs-vsG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~ 268 (453)
T PTZ00147 196 KVEMNYVSGT-VSGFFSKDLVTIGN-----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELK 268 (453)
T ss_pred EEEEEeCCCC-EEEEEEEEEEEECC-----EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHH
Confidence 9999999997 89999999999988 7777 579998866542 22 2479999999987652 3343
Q ss_pred ------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 241 ------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 241 ------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
.++||+||++... ..|.|+||+ .|.+ +.|+|+ ..+.+|.|.++ +.+|+...
T Consensus 269 ~qg~I~~~vFS~~L~~~~~---~~G~L~fGG-iD~~ky~G~l~y~pl-~~~~~W~V~l~-~~vg~~~~------------ 330 (453)
T PTZ00147 269 NQNKIEQAVFTFYLPPEDK---HKGYLTIGG-IEERFYEGPLTYEKL-NHDLYWQVDLD-VHFGNVSS------------ 330 (453)
T ss_pred HcCCCCccEEEEEecCCCC---CCeEEEECC-cChhhcCCceEEEEc-CCCceEEEEEE-EEECCEec------------
Confidence 5699999986432 348899995 5543 456666 46789999998 47776432
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
....+||||||+++++|+++++++.+++.+... . ......++|+. ..+|+|+|+|+ |..++|||++|+
T Consensus 331 ~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~---~-~~~~y~~~C~~-------~~lP~~~f~f~-g~~~~L~p~~yi 398 (453)
T PTZ00147 331 EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV---P-FLPLYVTTCNN-------TKLPTLEFRSP-NKVYTLEPEYYL 398 (453)
T ss_pred CceeEEECCCCchhcCCHHHHHHHHHHhCCeec---C-CCCeEEEeCCC-------CCCCeEEEEEC-CEEEEECHHHhe
Confidence 156899999999999999999999998854310 1 11112578986 46899999998 899999999999
Q ss_pred EEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 390 FQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 390 ~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
.+..+ ...|++.+...+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 399 ~~~~~~~~~~C~~~i~~~~~~---~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 399 QPIEDIGSALCMLNIIPIDLE---KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred eccccCCCcEEEEEEEECCCC---CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 76433 45798644333221 1369999999999999999999999999986
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.5e-49 Score=381.66 Aligned_cols=256 Identities=42% Similarity=0.723 Sum_probs=215.9
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeee
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQ 175 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~ 175 (448)
+|+++|+||||||++.|++||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999976 25789
Q ss_pred eeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCCchhhhh---cCceeEeccCCC
Q 035660 176 TYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLSLVSQL---GSTFSYCVGNLN 252 (448)
Q Consensus 176 ~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql---~~~FS~~L~~~~ 252 (448)
.|+||+.+.|.+++|+|+|++.. ..++++.|||+....+......+||||||+...|+++|| +++||+||.+..
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~ 112 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHD 112 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCC
Confidence 99998889999999999999821 178999999999887633335899999999999999998 349999998743
Q ss_pred CCCCcceeEEeCCCCC---CCCcccccccc---CceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCcccccc
Q 035660 253 DPYYFHNKLVLGHGAR---IEGDSTPLEVI---NGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLV 326 (448)
Q Consensus 253 ~~~~~~g~l~fG~~~~---~~~~~~pl~~~---~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp 326 (448)
. ....|.|+||+.+. ..+.|+|+... +.+|.|+|++|+|+++.+.++++.+.........+||||||++++||
T Consensus 113 ~-~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp 191 (265)
T cd05476 113 D-TGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLP 191 (265)
T ss_pred C-CCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcC
Confidence 1 22348899996543 46789998443 68999999999999999877655444333446889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCCCeEEEEEEecCC
Q 035660 327 KAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPHSFCMAVLPSFV 406 (448)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~ 406 (448)
+++| |+|+|+|++|.++.+++++|+++..++..|++++....
T Consensus 192 ~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~ 233 (265)
T cd05476 192 DPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSS 233 (265)
T ss_pred cccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCC
Confidence 9876 68999998789999999999997766789998886532
Q ss_pred CCCCCCCceeeehhhccceEEEEECCCCEEEEecCCC
Q 035660 407 NGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDC 443 (448)
Q Consensus 407 ~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C 443 (448)
. +.||||++|||++|++||++++|||||+++|
T Consensus 234 ~-----~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 234 G-----GVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred C-----CcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 1 4699999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.8e-49 Score=400.07 Aligned_cols=292 Identities=18% Similarity=0.302 Sum_probs=228.6
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCc
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQC 171 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~ 171 (448)
..+.+|+++|.||||||++.|++||||+++||+|..|..+..+.++.|||++|+|++. .+|
T Consensus 134 ~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~-------------------~~~ 194 (450)
T PTZ00013 134 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEK-------------------DGT 194 (450)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCccccc-------------------CCc
Confidence 4567899999999999999999999999999999999853223678999999999987 578
Q ss_pred eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC---CcC-CCcceeeecCCCCCc------hhhhh-
Q 035660 172 LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK---FED-RHLSGVFGLGFSRLS------LVSQL- 240 (448)
Q Consensus 172 ~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~---~~~-~~~~GilGLg~~~~s------~~~ql- 240 (448)
.+.+.||+|+ +.|.+++|+|+|++ ++++ ..|+++.+..+ .+. ...+||||||++.++ ++.||
T Consensus 195 ~~~i~YG~Gs-v~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~ 267 (450)
T PTZ00013 195 KVDITYGSGT-VKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELK 267 (450)
T ss_pred EEEEEECCce-EEEEEEEEEEEECC-----EEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHH
Confidence 9999999998 89999999999998 6776 57888876542 122 247999999998765 33444
Q ss_pred ------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 241 ------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 241 ------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
.++||+||++... ..|.|+||+ .|.+ +.|+|+ ..+.+|.|+++ +.+|.... .
T Consensus 268 ~qg~I~~~vFS~~L~~~~~---~~G~L~fGG-iD~~~y~G~L~y~pv-~~~~yW~I~l~-v~~G~~~~--~--------- 330 (450)
T PTZ00013 268 NQNKIDNALFTFYLPVHDV---HAGYLTIGG-IEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTM--Q--------- 330 (450)
T ss_pred hccCcCCcEEEEEecCCCC---CCCEEEECC-cCccccccceEEEEc-CcCceEEEEEE-EEECceec--c---------
Confidence 5689999986422 247899995 5544 456666 56789999998 66765432 1
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
...+||||||+++++|+++++++.+++..... . .......+|+. ..+|+|+|+|+ |.+++|+|++|+
T Consensus 331 -~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~---~-~~~~y~~~C~~-------~~lP~i~F~~~-g~~~~L~p~~Yi 397 (450)
T PTZ00013 331 -KANVIVDSGTTTITAPSEFLNKFFANLNVIKV---P-FLPFYVTTCDN-------KEMPTLEFKSA-NNTYTLEPEYYM 397 (450)
T ss_pred -ccceEECCCCccccCCHHHHHHHHHHhCCeec---C-CCCeEEeecCC-------CCCCeEEEEEC-CEEEEECHHHhe
Confidence 46899999999999999999999988854321 1 11112578975 46899999998 899999999998
Q ss_pred EEeC--CCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 390 FQRW--PHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 390 ~~~~--~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
.+.. ++..|+..+...+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~~---~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 398 NPLLDVDDTLCMITMLPVDID---DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ehhccCCCCeeEEEEEECCCC---CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 7532 356798555433321 1369999999999999999999999999875
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.4e-47 Score=369.00 Aligned_cols=258 Identities=23% Similarity=0.312 Sum_probs=211.9
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeeee
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQT 176 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~~ 176 (448)
|+++|+||||||++.|++||||+++||+|..|..|..+.++.|||++|+|++.. ..|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~------------------~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLL------------------PGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceec------------------CCcEEEEE
Confidence 899999999999999999999999999999999988777888999999999864 36899999
Q ss_pred eCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch---------hhhh-----
Q 035660 177 YIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL---------VSQL----- 240 (448)
Q Consensus 177 Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~---------~~ql----- 240 (448)
|++|+.+.|.+++|+|+|++ ..++++.|||++...+ .+. ...+||||||+...+. .++|
T Consensus 63 Y~~G~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~ 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIGG-----VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEECC-----EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc
Confidence 99998789999999999998 7899999999998765 222 3589999999976542 3333
Q ss_pred cCceeEeccCCCCCCCcceeEEeCCCC----CCCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCceEE
Q 035660 241 GSTFSYCVGNLNDPYYFHNKLVLGHGA----RIEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVII 316 (448)
Q Consensus 241 ~~~FS~~L~~~~~~~~~~g~l~fG~~~----~~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~ii 316 (448)
.++||+||.+. ..|.|+||+.+ ..++.|+|+.....+|.|++++|+||++..... .+..+||
T Consensus 138 ~~~Fs~~l~~~-----~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~---------~~~~~ii 203 (278)
T cd06097 138 APLFTADLRKA-----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSR---------SGFSAIA 203 (278)
T ss_pred CceEEEEecCC-----CCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeec---------CCceEEe
Confidence 36999999861 23789999544 235678887444789999999999998743221 2578999
Q ss_pred eccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCCCe
Q 035660 317 DSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPHS 396 (448)
Q Consensus 317 DSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~ 396 (448)
||||+++++|++++++|.+++.+.. +........++|.. .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~---~~~~~~~~~~~C~~--------~~P~i~f~~--------------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAY---YDSEYGGWVFPCDT--------TLPDLSFAV--------------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCc---ccCCCCEEEEECCC--------CCCCEEEEE---------------------
Confidence 9999999999999999999884332 11111122678986 289999999
Q ss_pred EEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 397 FCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 397 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
.||||++|||++|+|||++++|||||+
T Consensus 252 -----------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 299999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.4e-45 Score=357.98 Aligned_cols=262 Identities=21% Similarity=0.340 Sum_probs=213.2
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeee
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQ 175 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~ 175 (448)
.|+++|.||||+|++.|++||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 59999999999999999999999999996 2778
Q ss_pred eeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCC-----------chhhhh----
Q 035660 176 TYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRL-----------SLVSQL---- 240 (448)
Q Consensus 176 ~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~ql---- 240 (448)
.|++|+.+.|.+++|+|+|++ ..++++.|||+++.. ..+||||||+... +++.||
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIGG-----ATVKNLQFAVANSTS-----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEECC-----eEecceEEEEEecCC-----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 999987799999999999988 688999999999853 4799999999886 577777
Q ss_pred ---cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCcccccccc-----CceEEEEEeEEEEcCEEeecCCcccccc
Q 035660 241 ---GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVI-----NGRYYITLEAISIGGKMLDIDPDIFTRK 307 (448)
Q Consensus 241 ---~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~-----~~~y~v~l~~i~vg~~~~~~~~~~~~~~ 307 (448)
++.||+||.+... ..|.|+||+ .|. .+.|+|+... ..+|.|++++|+|+++.++.+..
T Consensus 105 ~i~~~~Fsl~l~~~~~---~~g~l~~Gg-~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~----- 175 (295)
T cd05474 105 LIKKNAYSLYLNDLDA---STGSILFGG-VDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL----- 175 (295)
T ss_pred cccceEEEEEeCCCCC---CceeEEEee-eccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc-----
Confidence 4689999997432 347899995 443 3467777332 27899999999999988653211
Q ss_pred ccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCc
Q 035660 308 TWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDS 387 (448)
Q Consensus 308 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 387 (448)
.....++|||||++++||+++|++|.+++.+.... .......+|+.. .. |+|+|+|+ |++++||+++
T Consensus 176 -~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~C~~~------~~-p~i~f~f~-g~~~~i~~~~ 242 (295)
T cd05474 176 -SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS----DEGLYVVDCDAK------DD-GSLTFNFG-GATISVPLSD 242 (295)
T ss_pred -CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC----CCcEEEEeCCCC------CC-CEEEEEEC-CeEEEEEHHH
Confidence 23679999999999999999999999999766432 112227899972 33 99999998 7999999999
Q ss_pred eEEEeCC----CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 388 LFFQRWP----HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 388 y~~~~~~----~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
|+++... +..|+..+...+. +.||||++|||++|++||.+++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~-----~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTS-----DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCC-----CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9998652 6679744443332 26999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.6e-45 Score=362.49 Aligned_cols=293 Identities=23% Similarity=0.426 Sum_probs=236.6
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceee
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDC-SQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYN 174 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C-~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~ 174 (448)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|+|++|+|++. ..+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~-------------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSN-------------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEE-------------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccccccccccccccccccccc-------------------ceeeee
Confidence 599999999999999999999999999999999886 334678999999999988 467899
Q ss_pred eeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-c-CCCcceeeecCCCC-------Cchhhhh-----
Q 035660 175 QTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGFSR-------LSLVSQL----- 240 (448)
Q Consensus 175 ~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~-------~s~~~ql----- 240 (448)
+.|++|+ +.|.+++|+|+|++ +.+.++.||++....+. + ....+||||||+.. .+++.+|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeccCcc-cccccccceEeeee-----ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 9999999 99999999999998 89999999999986442 1 23589999999753 3466665
Q ss_pred --cCceeEeccCCCCCCCcceeEEeCCCCCCCC-----ccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCc
Q 035660 241 --GSTFSYCVGNLNDPYYFHNKLVLGHGARIEG-----DSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGG 313 (448)
Q Consensus 241 --~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~~-----~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~ 313 (448)
.++||++|.+.. ...|.|+||+ .|.++ .|.|+ ....+|.|.+.+|+++++..... ....
T Consensus 136 i~~~~fsl~l~~~~---~~~g~l~~Gg-~d~~~~~g~~~~~~~-~~~~~w~v~~~~i~i~~~~~~~~---------~~~~ 201 (317)
T PF00026_consen 136 ISSNVFSLYLNPSD---SQNGSLTFGG-YDPSKYDGDLVWVPL-VSSGYWSVPLDSISIGGESVFSS---------SGQQ 201 (317)
T ss_dssp SSSSEEEEEEESTT---SSEEEEEESS-EEGGGEESEEEEEEB-SSTTTTEEEEEEEEETTEEEEEE---------EEEE
T ss_pred ccccccceeeeecc---cccchheeec-cccccccCceeccCc-ccccccccccccccccccccccc---------ccee
Confidence 578999999864 3458899994 55544 45555 47889999999999999832211 1357
Q ss_pred eEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeC
Q 035660 314 VIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRW 393 (448)
Q Consensus 314 ~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~ 393 (448)
++||||+++++||++++++|++++.+.... ....++|.. ...+|.|+|+|+ +.+++|||++|+.+..
T Consensus 202 ~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~------~~~~p~l~f~~~-~~~~~i~~~~~~~~~~ 268 (317)
T PF00026_consen 202 AILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNS------TDSLPDLTFTFG-GVTFTIPPSDYIFKIE 268 (317)
T ss_dssp EEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTG------GGGSEEEEEEET-TEEEEEEHHHHEEEES
T ss_pred eecccccccccccchhhHHHHhhhcccccc------eeEEEeccc------ccccceEEEeeC-CEEEEecchHhccccc
Confidence 999999999999999999999999766422 222688987 357899999998 8999999999999977
Q ss_pred CC--eEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 394 PH--SFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 394 ~~--~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
+. ..|+..+...+. ....+.+|||.+|||++|++||.+++|||||++
T Consensus 269 ~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 269 DGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp STTSSEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccceeEeeeecccc-cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 63 389876665221 111357999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.8e-43 Score=339.87 Aligned_cols=262 Identities=30% Similarity=0.524 Sum_probs=213.9
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCC--CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceee
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPI--FDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYN 174 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~--ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~ 174 (448)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++.. ..|.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~-------------------~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD-------------------TGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec-------------------CCCEEE
Confidence 789999999999999999999999999999999987655555 78888877665 689999
Q ss_pred eeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCc-CCCcceeeecCCCC------Cchhhhh-------
Q 035660 175 QTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFE-DRHLSGVFGLGFSR------LSLVSQL------- 240 (448)
Q Consensus 175 ~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql------- 240 (448)
+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ....+||||||+.. .++++||
T Consensus 62 ~~Y~~g~-~~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~ 135 (283)
T cd05471 62 ITYGDGS-VTGGLGTDTVTIGG-----LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLIS 135 (283)
T ss_pred EEECCCe-EEEEEEEeEEEECC-----EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCC
Confidence 9999987 89999999999998 678999999999887522 23589999999988 7888887
Q ss_pred cCceeEeccCCCCCCCcceeEEeCCCCC----CCCcccccccc-CceEEEEEeEEEEcCEEeecCCccccccccCCCceE
Q 035660 241 GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVI-NGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVI 315 (448)
Q Consensus 241 ~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~-~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~i 315 (448)
.++||+||.+.. .....|.|+||+.+. ..+.|+|+... ..+|.|.+++|+|+++..... .....++
T Consensus 136 ~~~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~i 206 (283)
T cd05471 136 SPVFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS--------SGGGGAI 206 (283)
T ss_pred CCEEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec--------CCCcEEE
Confidence 379999999853 123458899996542 35678888443 889999999999999741111 1267999
Q ss_pred EeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCCC
Q 035660 316 IDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPH 395 (448)
Q Consensus 316 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~ 395 (448)
|||||++++||+++|++|.+++.+.... ........|.. ...+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~~~~~------~~~~p~i~f~f-------------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS----SDGGYGVDCSP------CDTLPDITFTF-------------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc----cCCcEEEeCcc------cCcCCCEEEEE--------------------
Confidence 9999999999999999999999877532 01111334443 35799999999
Q ss_pred eEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 396 SFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 396 ~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 199999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=1.3e-32 Score=244.24 Aligned_cols=157 Identities=43% Similarity=0.753 Sum_probs=129.8
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC--CC-CCCCCcee
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNV--KC-NFLNQCLY 173 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~--~C-~~~~~~~~ 173 (448)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...+.. .| ..+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 46899999999999999999999987743 33 34678999
Q ss_pred eeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCCchhhhh----cCceeEecc
Q 035660 174 NQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLSLVSQL----GSTFSYCVG 249 (448)
Q Consensus 174 ~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql----~~~FS~~L~ 249 (448)
.+.|++++.+.|.+++|+|+++...+....+.++.|||++...+.+. ..+||||||++++||++|| .++|||||+
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~-~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~ 150 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFY-GADGILGLGRGPLSLPSQLASSSGNKFSYCLP 150 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSST-TEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCc-CCCcccccCCCcccHHHHHHHhcCCeEEEECC
Confidence 99999999999999999999998655557889999999999988665 6999999999999999999 789999999
Q ss_pred CCCCCCCcceeEEeCC
Q 035660 250 NLNDPYYFHNKLVLGH 265 (448)
Q Consensus 250 ~~~~~~~~~g~l~fG~ 265 (448)
+ +.....|.|+||+
T Consensus 151 ~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 151 S--SSPSSSGFLSFGD 164 (164)
T ss_dssp S---SSSSEEEEEECS
T ss_pred C--CCCCCCEEEEeCc
Confidence 9 2334568899994
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=5.2e-28 Score=214.52 Aligned_cols=155 Identities=38% Similarity=0.725 Sum_probs=122.4
Q ss_pred eEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhc-ccc-c-ccCCccccee
Q 035660 282 RYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMW-LTR-Y-RFDSWTLCYR 358 (448)
Q Consensus 282 ~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~-~~~-~-~~~~~~~C~~ 358 (448)
+|+|+|++|+||++++.+++..|+. .++.+++||||||++|+||+++|++|+++|.+.+... +.+ . ....+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999999877 6778999999999999999999999999999998653 121 1 1223889999
Q ss_pred ccC---CCccccCCeEEEEEcCCcEEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCE
Q 035660 359 GTA---SHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKK 435 (448)
Q Consensus 359 ~~~---~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~r 435 (448)
... ......+|+|+|||.+|++++|++++|++...++.+|+++....... .+.+|||+.+|++++++||++++|
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~---~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADD---DGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTT---SSSEEE-HHHCCTEEEEEETTTTE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCC---CCcEEECHHHhcCcEEEEECCCCE
Confidence 664 23356899999999999999999999999998899999999881111 247999999999999999999999
Q ss_pred EEEec
Q 035660 436 LAFER 440 (448)
Q Consensus 436 iGfa~ 440 (448)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=1.3e-23 Score=173.81 Aligned_cols=106 Identities=35% Similarity=0.604 Sum_probs=94.2
Q ss_pred EEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeeeee
Q 035660 99 MNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIF-DPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQTY 177 (448)
Q Consensus 99 ~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~y-dp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~~Y 177 (448)
++|.||||||++.|+|||||+++||+|..|..|..+.++.| +|+.|++++. ..|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~-------------------~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSD-------------------NGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCC-------------------CCcEEEEEe
Confidence 47999999999999999999999999999998876667777 9999999887 579999999
Q ss_pred CCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCc-C-CCcceeeec
Q 035660 178 IRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFE-D-RHLSGVFGL 229 (448)
Q Consensus 178 gdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGL 229 (448)
++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ . ...+|||||
T Consensus 62 ~~g~-~~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGS-LSGGLSTDTVSIGD-----IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCe-EEEEEEEEEEEECC-----EEECCEEEEEEEecCCccccccccccccCC
Confidence 9997 78999999999988 789999999999987743 2 348999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.10 E-value=1.1e-05 Score=64.24 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=67.7
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeee
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQ 175 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~ 175 (448)
.|++++.|+ .+++.+++|||++.+|+.......+.. ... ......+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~~--------------------~~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL------------PLT--------------------LGGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC------------Ccc--------------------CCCcEEE
Confidence 589999999 899999999999999996642222210 000 1335667
Q ss_pred eeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCC
Q 035660 176 TYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGF 231 (448)
Q Consensus 176 ~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 231 (448)
...+|.........+.+++++ ..++++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEECC-----cEEeccEEEEeCCccc----CCceEeChHH
Confidence 777787656666689999998 7888888888866543 4799999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.89 E-value=0.0071 Score=50.64 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=63.2
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCce
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCL 172 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~ 172 (448)
.+|.|++++.|. .+++.++||||++.+-+...--... ..++.. ....
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~-------------------------~~~~ 54 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR-------------------------LGYT 54 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc-------------------------CCce
Confidence 358999999998 8899999999999988754311000 011110 0113
Q ss_pred eeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCC
Q 035660 173 YNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGF 231 (448)
Q Consensus 173 ~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 231 (448)
..+.=+.|........-|.+++|+ +.+.|+.+.+..... ..+|+||+.+
T Consensus 55 ~~~~ta~G~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 55 VTVSTANGQIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred EEEEeCCCcEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 333444565344556789999998 899999987774332 1479999964
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.49 E-value=0.023 Score=44.18 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=54.6
Q ss_pred EEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCceeeeeeC
Q 035660 99 MNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLYNQTYI 178 (448)
Q Consensus 99 ~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~~~~Yg 178 (448)
+++.|+ .+++.+++|||++.+.+...-..... ..+.. ......+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~-------------------------~~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRP-------------------------KSVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcC-------------------------CceeEEEEeC
Confidence 357777 78999999999998887544221110 00000 0112333334
Q ss_pred CCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecC
Q 035660 179 RGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLG 230 (448)
Q Consensus 179 dgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 230 (448)
+|.........+.+++++ ..+.++.|-..... ...+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig~-----~~~~~~~~~v~~~~-----~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIGG-----ITLKNVPFLVVDLG-----DPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEECC-----EEEEeEEEEEECCC-----CCCEEEeCCc
Confidence 444344556667899987 78888887777621 2478999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.31 E-value=0.37 Score=40.38 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=27.8
Q ss_pred cceEEEEEEecCCCceEEEEEeCCCCceEEEcCC
Q 035660 94 FSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRP 127 (448)
Q Consensus 94 ~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~ 127 (448)
...+++++.|+ ++++.+++|||++.+++...-
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 35799999999 999999999999999985543
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.12 E-value=0.34 Score=40.64 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=22.0
Q ss_pred eeeehhhccceEEEEECCCCEEEE
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKLAF 438 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~riGf 438 (448)
.|||..||+.+-.+.|+.+++|-|
T Consensus 101 ~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 101 FLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEecHHHHHhCCeEEECCCCEEEC
Confidence 899999999999999999998753
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.40 E-value=0.14 Score=40.22 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=25.2
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
|++++.|+ .+++.+++||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 99999999999999999654
No 33
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.62 E-value=2.1 Score=33.15 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 100 NFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 100 ~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
.+.|. ++++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 46676 89999999999999999554
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.26 E-value=0.63 Score=34.87 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.1
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD 130 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~ 130 (448)
..+.+++.+.|| ++.+.+++|||++...+...-+..
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~r 40 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAKR 40 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHHH
Confidence 347899999999 899999999999999886654433
No 35
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=87.50 E-value=5 Score=39.74 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=32.2
Q ss_pred eeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcC-----------CC-----CcCCCcceeeecCCCC
Q 035660 176 TYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDN-----------GK-----FEDRHLSGVFGLGFSR 233 (448)
Q Consensus 176 ~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~-----------~~-----~~~~~~~GilGLg~~~ 233 (448)
.|++|. +-|-+.+-.|+|++. ...++++-...+. .+ .......||||+|.-.
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge-----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGE-----TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCe-----eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 467765 789999999999984 3333444333221 11 1112489999998754
No 36
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=87.20 E-value=1 Score=38.37 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=25.2
Q ss_pred eeeehhhccceEEEEECCCCEEEEecC
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
.|||..+|+.+...-|+.+++|-|...
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeCC
Confidence 899999999999999999999999753
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=86.37 E-value=2.4 Score=38.39 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=58.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCc
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQC 171 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~ 171 (448)
..+|.|.++..|- +|++..+||||-+.+-+..+.- ..--+|... ...
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA------~RlGid~~~-------------------------l~y 147 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA------RRLGIDLNS-------------------------LDY 147 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH------HHhCCCccc-------------------------cCC
Confidence 4678999999999 9999999999999887755421 111233322 134
Q ss_pred eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeE
Q 035660 172 LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCG 212 (448)
Q Consensus 172 ~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~ 212 (448)
++.+.-..|......+-.|.|.||+ +.+.|+.=-++
T Consensus 148 ~~~v~TANG~~~AA~V~Ld~v~IG~-----I~~~nV~A~V~ 183 (215)
T COG3577 148 TITVSTANGRARAAPVTLDRVQIGG-----IRVKNVDAMVA 183 (215)
T ss_pred ceEEEccCCccccceEEeeeEEEcc-----EEEcCchhhee
Confidence 6667778888556678899999998 67776653333
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=86.17 E-value=1.1 Score=35.71 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.7
Q ss_pred EEEEEecCCCceEEEEEeCCCCceEEEcCC
Q 035660 98 FMNFTIGQPPIPQFTVMDTGSTLLWVQCRP 127 (448)
Q Consensus 98 ~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~ 127 (448)
+.+|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5678888 889999999999999996653
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=84.70 E-value=5.5 Score=32.35 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.2
Q ss_pred ceeeehhhccceEEEEECCCCEE
Q 035660 414 LSLIGMMAQQNYNVAYDIGGKKL 436 (448)
Q Consensus 414 ~~ilG~~fl~~~yvvfD~~~~ri 436 (448)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 48999999999999999988753
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=79.92 E-value=3.3 Score=34.50 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=27.7
Q ss_pred cCceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHH
Q 035660 279 INGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 279 ~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (448)
..++|+++ +.|+|+++ .++||||.+.+.++++..+++
T Consensus 8 ~~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 34566544 67788743 679999999999999976654
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=79.88 E-value=2 Score=32.96 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.6
Q ss_pred ceEEeccCccccccHHHHHHH
Q 035660 313 GVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (448)
.++||||.+.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 689999999999999877666
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.59 E-value=3 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.4
Q ss_pred EEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 100 NFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 100 ~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
++.|+ .|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46777 99999999999999998543
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=75.87 E-value=3.3 Score=32.30 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.2
Q ss_pred EEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHHH
Q 035660 289 AISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALL 334 (448)
Q Consensus 289 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~ 334 (448)
.+.|+|+.+ .+.+|||++.+.++++.+..+-
T Consensus 4 ~~~Ing~~i---------------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL---------------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE---------------EEEEcCCcceEEeCHHHHHHhC
Confidence 367788765 5799999999999999877663
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=75.16 E-value=8 Score=33.82 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred CCceEEeccCccccccHHHHHHHHHH
Q 035660 311 NGGVIIDSGSSATWLVKAGYDALLHE 336 (448)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~~l~~~ 336 (448)
...++||||+....+-.++.+.|--.
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~L~ 70 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLELP 70 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhCCc
Confidence 34789999999999888866665433
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.02 E-value=5.6 Score=29.67 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=18.8
Q ss_pred ceEEeccCccccccHHHHHHH
Q 035660 313 GVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (448)
.+++|||.+..+++.+..+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 589999999999999977776
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.02 E-value=6.7 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.1
Q ss_pred ceEEeccCccccccHHHHHHH
Q 035660 313 GVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (448)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 689999999999999876655
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.12 E-value=7.9 Score=29.89 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=18.6
Q ss_pred ceEEeccCccccccHHHHHHH
Q 035660 313 GVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l 333 (448)
..++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 579999999999999988765
No 48
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=62.96 E-value=8.8 Score=34.89 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=33.3
Q ss_pred cCCeEEEEEcCCcEEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEec
Q 035660 367 GFPAVTFHFAGGAELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFER 440 (448)
Q Consensus 367 ~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~ 440 (448)
..+.+.+.++ +..|.+| ++++.+ .+. ..|||+.|+|.|+=-...+ .+|-|-.
T Consensus 66 ~~~~~~i~I~-~~~F~IP---~iYq~~-------------~g~----d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQIA-DKIFRIP---TIYQQE-------------SGI----DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEEc-cEEEecc---EEEEec-------------CCC----CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4667777777 6777776 333211 112 3999999999877655554 4677754
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=54.94 E-value=8.2 Score=30.46 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=14.6
Q ss_pred ceEEeccCccccccHH
Q 035660 313 GVIIDSGSSATWLVKA 328 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~ 328 (448)
.++||||+..+.++++
T Consensus 18 ~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 18 KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTBSSEEESSG
T ss_pred EEEEecCCCcceeccc
Confidence 6899999999999876
No 50
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=54.00 E-value=82 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.8
Q ss_pred CCceEEeccCccccccHHHH
Q 035660 311 NGGVIIDSGSSATWLVKAGY 330 (448)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~ 330 (448)
+...+||||.....+|.+..
T Consensus 9 ~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CcEEEEeCCCceEeeccccc
Confidence 56789999999999997743
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=51.33 E-value=20 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=23.3
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
=...+.+++-..++++++||||....+...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 345566666699999999999998888553
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=49.03 E-value=18 Score=28.55 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.9
Q ss_pred CceEEeccCccccccHHHHHHHH
Q 035660 312 GGVIIDSGSSATWLVKAGYDALL 334 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~ 334 (448)
-.+.+|||.+...||...|+.+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 36899999999999999877765
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=46.49 E-value=12 Score=31.33 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=25.8
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCC
Q 035660 95 SLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCS 132 (448)
Q Consensus 95 ~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~ 132 (448)
...|+++.|+ .++++++||||...+-+...-+..|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 4689999999 99999999999999888665444464
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=45.01 E-value=38 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=27.8
Q ss_pred cCceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHH
Q 035660 279 INGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDA 332 (448)
Q Consensus 279 ~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 332 (448)
.+++|+++ ..|||+.+ ..++|||.|.+.|+++.-+.
T Consensus 102 ~~GHF~a~---~~VNGk~v---------------~fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 102 RDGHFEAN---GRVNGKKV---------------DFLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCCcEEEE---EEECCEEE---------------EEEEecCcceeecCHHHHHH
Confidence 46677654 78899877 56999999999999884443
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.77 E-value=30 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.1
Q ss_pred EEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHH
Q 035660 289 AISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDAL 333 (448)
Q Consensus 289 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 333 (448)
.++|+|+.+ .|+||||+..+.++....+++
T Consensus 28 ~~~ing~~v---------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV---------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE---------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE---------------EEEEeCCCCccccCHHHHHHc
Confidence 367888866 689999999999999977764
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.57 E-value=19 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.9
Q ss_pred eeeehhhccceEEEEECCCCEE
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKL 436 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~ri 436 (448)
-+||.-.|+....++|...+++
T Consensus 96 ~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 96 PLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred cchhhhhhhhccEEEcCCcceE
Confidence 5899999999999999877765
No 57
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=30.87 E-value=38 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=18.0
Q ss_pred EEecCCC-ceEEEEEeCCCCceEEEc
Q 035660 101 FTIGQPP-IPQFTVMDTGSTLLWVQC 125 (448)
Q Consensus 101 v~iGtP~-q~~~l~vDTGS~~~Wv~~ 125 (448)
+.|. . +++.+.+|||++..-++-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4444 5 899999999999877744
No 58
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=29.76 E-value=2.4e+02 Score=22.15 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.0
Q ss_pred ceEEEEEeCCCCceEEEcCCC
Q 035660 108 IPQFTVMDTGSTLLWVQCRPC 128 (448)
Q Consensus 108 q~~~l~vDTGS~~~Wv~~~~C 128 (448)
.....++|||+...-+|...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 356789999999999977643
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.10 E-value=67 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEecCCC----ceEEEEEeCCCCceE
Q 035660 99 MNFTIGQPP----IPQFTVMDTGSTLLW 122 (448)
Q Consensus 99 ~~v~iGtP~----q~~~l~vDTGS~~~W 122 (448)
++|.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 578888873 278999999998654
No 60
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.33 E-value=78 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=16.1
Q ss_pred EEEecCCCceEEEEEeCCCCceEE
Q 035660 100 NFTIGQPPIPQFTVMDTGSTLLWV 123 (448)
Q Consensus 100 ~v~iGtP~q~~~l~vDTGS~~~Wv 123 (448)
++.++ ...+.+++|||+...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34555 47889999999886533
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=21.46 E-value=7.8e+02 Score=24.62 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.1
Q ss_pred eeeehhhccceEEEEECCCCEEEEecC
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
..||.-.||++--.-|++++++=|+..
T Consensus 320 ~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 320 LLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred hhhhHHHHHhccceeecccCeEEecCC
Confidence 789999999999999999998877654
Done!