Query 035660
Match_columns 448
No_of_seqs 217 out of 1732
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 1.3E-60 4.4E-65 483.9 29.7 330 91-441 16-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 5.5E-57 1.9E-61 457.2 29.2 332 92-448 18-399 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 2E-56 7E-61 447.4 29.1 298 92-442 53-370 (370)
4 2apr_A Rhizopuspepsin; hydrola 100.0 6.1E-56 2.1E-60 437.0 25.4 300 86-442 6-324 (325)
5 1j71_A Candidapepsin, aspartic 100.0 7E-56 2.4E-60 438.3 24.6 294 90-448 7-330 (334)
6 3c9x_A Trichoderma reesei aspa 100.0 5E-56 1.7E-60 438.4 22.4 298 90-441 10-329 (329)
7 1tzs_A Cathepsin E; hydrolase, 100.0 3.9E-55 1.3E-59 435.8 28.4 304 93-447 21-347 (351)
8 1oew_A Endothiapepsin; hydrola 100.0 9.3E-56 3.2E-60 436.4 22.1 297 90-441 10-329 (329)
9 2qzx_A Candidapepsin-5; aspart 100.0 2.5E-55 8.6E-60 435.8 23.7 296 90-448 7-337 (342)
10 1dpj_A Proteinase A; proteinas 100.0 6.6E-55 2.2E-59 430.5 25.8 297 93-442 11-329 (329)
11 3fv3_A SAPP1P-secreted asparti 100.0 6.4E-55 2.2E-59 432.4 25.8 297 88-447 5-334 (339)
12 1mpp_A Pepsin; hydrolase(acid 100.0 1E-54 3.5E-59 434.5 27.1 301 92-448 15-361 (361)
13 2x0b_A Renin; hydrolase-hormon 100.0 4E-55 1.4E-59 439.2 22.2 299 92-442 58-383 (383)
14 1am5_A Pepsin, acid proteinase 100.0 1.3E-54 4.4E-59 427.5 24.0 294 93-442 10-324 (324)
15 3cms_A Chymosin B; hydrolase, 100.0 1.5E-54 5.1E-59 426.8 22.3 291 92-442 11-323 (323)
16 3pvk_A Candidapepsin-2; hydrol 100.0 2E-54 6.7E-59 429.4 23.1 295 88-447 5-336 (342)
17 1htr_B Gastricsin; aspartyl pr 100.0 2.7E-54 9.3E-59 426.1 23.8 298 92-442 9-329 (329)
18 4aa9_A Chymosin; hydrolase, as 100.0 1.6E-54 5.5E-59 426.2 22.0 293 92-442 8-320 (320)
19 1ibq_A Aspergillopepsin; aspar 100.0 7.3E-54 2.5E-58 422.2 22.8 297 88-442 7-325 (325)
20 1t6e_X Xylanase inhibitor; two 100.0 5.7E-53 1.9E-57 424.7 28.8 319 91-442 10-373 (381)
21 1izd_A Aspartic proteinase; su 100.0 7.1E-54 2.4E-58 421.8 21.2 293 90-442 10-323 (323)
22 3k1w_A Renin; protease, altern 100.0 1.2E-53 4.2E-58 423.5 22.0 299 92-442 15-340 (341)
23 2bju_A Plasmepsin II; aspartic 100.0 1.1E-53 3.9E-58 435.7 20.7 289 92-442 135-450 (453)
24 2ewy_A Beta-secretase 2; BACE2 100.0 1.3E-52 4.4E-57 422.6 27.9 312 94-447 12-360 (383)
25 1bxo_A Protein (penicillopepsi 100.0 8E-54 2.7E-58 421.6 17.9 296 87-442 7-323 (323)
26 3lpj_A Beta-secretase 1; alzhe 100.0 1.8E-52 6E-57 430.5 27.6 313 93-447 72-425 (455)
27 1qdm_A Prophytepsin; aspartic 100.0 2E-52 6.9E-57 430.6 27.8 304 93-441 50-477 (478)
28 2qp8_A Beta-secretase 1; BACE1 100.0 3.5E-52 1.2E-56 421.1 28.4 311 93-447 19-372 (395)
29 3vf3_A Beta-secretase 1; struc 100.0 4E-52 1.4E-56 421.7 28.1 314 94-448 27-380 (402)
30 1miq_A Plasmepsin; aspartic pr 100.0 6E-53 2E-57 423.1 21.5 288 92-442 59-374 (375)
31 1yg9_A Aspartic protease BLA G 100.0 2E-52 7E-57 412.7 22.0 291 93-442 15-329 (330)
32 3qvc_A Histo-aspartic protease 100.0 1.3E-51 4.5E-56 420.9 23.9 289 92-442 134-449 (451)
33 1wkr_A Polyporopepsin; hydrola 100.0 4.4E-51 1.5E-55 405.0 25.3 293 93-447 10-338 (340)
34 1b5f_A Protein (cardosin A); h 100.0 1.1E-39 3.9E-44 306.9 17.2 210 92-339 10-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 1.7E-34 5.8E-39 272.0 20.0 217 202-442 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 1.2E-22 4.2E-27 162.6 7.8 83 92-196 10-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 1.1E-16 3.9E-21 125.5 7.9 82 353-442 4-87 (87)
38 2i1a_A DNA damage-inducible pr 92.9 0.12 4.3E-06 43.3 5.2 31 94-126 24-54 (148)
39 3s8i_A Protein DDI1 homolog 1; 92.4 0.24 8.2E-06 41.7 6.3 27 415-441 109-135 (148)
40 2i1a_A DNA damage-inducible pr 91.6 0.43 1.5E-05 39.9 7.0 25 415-439 110-134 (148)
41 1fmb_A EIAV protease; hydrolas 86.5 0.66 2.3E-05 36.5 4.0 26 97-124 9-34 (104)
42 2hs1_A HIV-1 protease; ultra-h 85.6 0.95 3.2E-05 35.2 4.5 27 98-126 10-36 (99)
43 3ec0_A Protease; HIV-2, inhibi 82.5 1.5 5E-05 34.0 4.3 27 98-126 10-36 (99)
44 3liy_A Protease; hydrolase, hy 81.5 1.5 5.2E-05 34.7 4.1 31 98-128 12-45 (116)
45 2hah_A Protease, retropepsin; 78.3 1.9 6.5E-05 34.5 3.8 26 98-126 16-41 (116)
46 3sqf_A Protease; folded monome 73.8 3.3 0.00011 32.9 4.0 28 98-127 11-38 (114)
47 3s8i_A Protein DDI1 homolog 1; 73.1 2.8 9.5E-05 35.1 3.7 30 95-126 23-52 (148)
48 3slz_A GAG-Pro-POL polyprotein 61.5 7.3 0.00025 31.8 3.8 29 96-126 22-50 (132)
49 2rsp_A RSV protease; hydrolase 58.7 7.3 0.00025 31.4 3.3 23 103-127 27-49 (124)
50 3ka2_A [L-Ala51;Gly51']HIV-1 p 57.6 8.6 0.00029 33.8 3.8 26 97-124 9-34 (203)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 36.9 29 0.00098 30.5 3.8 27 97-125 113-139 (203)
52 1b5f_A Protein (cardosin A); h 23.1 72 0.0025 28.3 4.2 32 95-126 188-227 (239)
53 3fv3_A SAPP1P-secreted asparti 20.8 68 0.0023 30.0 3.7 39 274-328 5-43 (339)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1.3e-60 Score=483.87 Aligned_cols=330 Identities=19% Similarity=0.326 Sum_probs=268.8
Q ss_pred ccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC------
Q 035660 91 SKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVK------ 164 (448)
Q Consensus 91 ~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~------ 164 (448)
...+++|+++|.||||||+|.|++||||+++||+|.+| .+|+||+.++|.++.|.......
T Consensus 16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~~~~~~~~~c~s 82 (413)
T 3vla_A 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSLSGSIACGDCFN 82 (413)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHHTTCCEEECCSS
T ss_pred cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccccccCCCccccc
Confidence 44678999999999999999999999999999999976 47999999999999998765332
Q ss_pred -----CCCCCCceeeeee-CCCCceeceeEEEEEEEecCCCC----ceeeccEEEEeEEcC--CCCcCCCcceeeecCCC
Q 035660 165 -----CNFLNQCLYNQTY-IRGPSASGVLATEQLIFKTSDEG----KIRVQDVVFGCGHDN--GKFEDRHLSGVFGLGFS 232 (448)
Q Consensus 165 -----C~~~~~~~~~~~Y-gdgs~~~G~~~~D~v~~~~~~~~----~~~~~~~~fg~~~~~--~~~~~~~~~GilGLg~~ 232 (448)
|. ++.|.|.+.| +|++.+.|.+++|+|+|+..++. .+.++++.|||++.. .+.+ ..++||||||++
T Consensus 83 ~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~-~~~dGIlGLg~~ 160 (413)
T 3vla_A 83 GPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA-SGVVGMAGLGRT 160 (413)
T ss_dssp CCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC-TTCCEEEECSSS
T ss_pred CCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc-cccccccccCCC
Confidence 33 3579999999 48877999999999999854322 368899999999986 3433 368999999999
Q ss_pred CCchhhhh------cCceeEeccCCCCCCCcceeEEeCCCCC---------CC-Ccccccccc-------------CceE
Q 035660 233 RLSLVSQL------GSTFSYCVGNLNDPYYFHNKLVLGHGAR---------IE-GDSTPLEVI-------------NGRY 283 (448)
Q Consensus 233 ~~s~~~ql------~~~FS~~L~~~~~~~~~~g~l~fG~~~~---------~~-~~~~pl~~~-------------~~~y 283 (448)
++|+++|| +++|||||.+.. ...|.|+||+.+. .. +.|+||... ..+|
T Consensus 161 ~lSl~sql~~~~~i~~~FS~cL~~~~---~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y 237 (413)
T 3vla_A 161 RIALPSQFASAFSFKRKFAMCLSGST---SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237 (413)
T ss_dssp SSSHHHHHHHHHTCCSEEEEECCSCS---SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSC
T ss_pred CcchHHHHhhhcCCCceEEEeCCCCC---CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceE
Confidence 99999998 279999999842 2458899996542 24 789999433 2799
Q ss_pred EEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhh-cccccccC-CcccceeccC
Q 035660 284 YITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDM-WLTRYRFD-SWTLCYRGTA 361 (448)
Q Consensus 284 ~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~C~~~~~ 361 (448)
+|+|++|+||++.+.+++..|..+..+++++||||||++++||+++|++|.++|.+++.. .+++.... .++.|+....
T Consensus 238 ~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~ 317 (413)
T 3vla_A 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDN 317 (413)
T ss_dssp EECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTT
T ss_pred EEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCC
Confidence 999999999999999988888776656789999999999999999999999999988742 22332222 2789998432
Q ss_pred CC---ccccCCeEEEEEcC-CcEEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEE
Q 035660 362 SH---DLIGFPAVTFHFAG-GAELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLA 437 (448)
Q Consensus 362 ~~---~~~~~P~i~~~f~g-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riG 437 (448)
.. ....+|+|+|+|+| +++|+||+++|+++..++..|++++...... ++.||||+.|||++|+|||++++|||
T Consensus 318 ~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~---~~~~IlGd~fl~~~~vvfD~~~~riG 394 (413)
T 3vla_A 318 ILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNL---RTSIVIGGHQLEDNLVQFDLATSRVG 394 (413)
T ss_dssp CCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSC---SSSEEECHHHHTTEEEEEETTTTEEE
T ss_pred ccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCc---ccceeEehhhhcCeEEEEECCCCEEE
Confidence 11 01379999999995 4899999999999877678999887754321 24799999999999999999999999
Q ss_pred EecC
Q 035660 438 FERV 441 (448)
Q Consensus 438 fa~~ 441 (448)
||++
T Consensus 395 fa~~ 398 (413)
T 3vla_A 395 FSGT 398 (413)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9974
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=5.5e-57 Score=457.19 Aligned_cols=332 Identities=20% Similarity=0.351 Sum_probs=254.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC--------
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNV-------- 163 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~-------- 163 (448)
..+++|+++|.||||||++.|+|||||+++||+|.+| .+|+|++.++|.++.|......
T Consensus 18 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~-------------~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~ 84 (403)
T 3aup_A 18 GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ-------------YSSKTYQAPFCHSTQCSRANTHQCLSCPAA 84 (403)
T ss_dssp TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC-------------CCCSSCBCCCTTBHHHHHTTCCCEEECSSS
T ss_pred CCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC-------------CCCCCCCccCCCCccccCccccCccccCCC
Confidence 3568999999999999999999999999999998874 4799999999999999765432
Q ss_pred ---CCCCCCCceeeeeeC-CCCceeceeEEEEEEEecCCCCc------eeeccEEEEeEEcCCCC-c-CCCcceeeecCC
Q 035660 164 ---KCNFLNQCLYNQTYI-RGPSASGVLATEQLIFKTSDEGK------IRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGF 231 (448)
Q Consensus 164 ---~C~~~~~~~~~~~Yg-dgs~~~G~~~~D~v~~~~~~~~~------~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~ 231 (448)
.|. +..|.|.+.|+ |++.+.|.+++|+|+|++.++.. +.++++.|||++...+. + ....+||||||+
T Consensus 85 ~~s~~~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 163 (403)
T 3aup_A 85 SRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH 163 (403)
T ss_dssp CBTTBC-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred CCCCCC-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence 343 25799999998 78779999999999998744322 78999999999986422 2 235899999999
Q ss_pred CCCchhhhh------cCceeEeccCCCCCCCcceeEEeCCCCC-------C-----CCcccccccc-CceEEEEEeEEEE
Q 035660 232 SRLSLVSQL------GSTFSYCVGNLNDPYYFHNKLVLGHGAR-------I-----EGDSTPLEVI-NGRYYITLEAISI 292 (448)
Q Consensus 232 ~~~s~~~ql------~~~FS~~L~~~~~~~~~~g~l~fG~~~~-------~-----~~~~~pl~~~-~~~y~v~l~~i~v 292 (448)
+.+++++|| .++||+||.+.. ...|.|+||+ +. . .+.|+||... ..+|+|+|++|+|
T Consensus 164 ~~~s~~~ql~~~~~~~~~FS~~L~~~~---~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~i~v 239 (403)
T 3aup_A 164 APISLPNQLASHFGLQRQFTTCLSRYP---TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRI 239 (403)
T ss_dssp STTSHHHHHHHHHTCCSEEEEECCSCT---TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEEEEE
T ss_pred CCcCHHHHHHhhcCCCCeEEEEcCCCC---CCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEEEEE
Confidence 999999987 479999998742 2358899996 31 1 5678999433 4799999999999
Q ss_pred cCEEe-ecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc-CCcccceeccCCCccccCCe
Q 035660 293 GGKML-DIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF-DSWTLCYRGTASHDLIGFPA 370 (448)
Q Consensus 293 g~~~~-~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~P~ 370 (448)
|++.+ .+++..+..+..+.+++||||||++++||+++|++|.++|.+++.. +..... ..+..|+.... ...+|+
T Consensus 240 ~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~c~~c~~---~~~~P~ 315 (403)
T 3aup_A 240 NQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK-QAQVKSVAPFGLCFNSNK---INAYPS 315 (403)
T ss_dssp TTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCG-GGEECCCTTCSCEECGGG---CCCCCC
T ss_pred CCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhcc-ccccCCCCCCCceEECCC---cCcCCc
Confidence 99998 7777666655556788999999999999999999999999876532 122111 11345654221 236999
Q ss_pred EEEEEcCC--cEEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEE-------ecC
Q 035660 371 VTFHFAGG--AELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAF-------ERV 441 (448)
Q Consensus 371 i~~~f~gg--~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGf-------a~~ 441 (448)
|+|+|+|+ ++|+||+++|+++..++..|++++...... .+.||||+.|||++|+|||++++|||| +++
T Consensus 316 i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~~~~~~ 392 (403)
T 3aup_A 316 VDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQP---RAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGV 392 (403)
T ss_dssp EEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCC---SSSEEECHHHHTTSCEEEETTTTEEEEESSCGGGGTC
T ss_pred EEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCC---CCcEEEChHHhcCeEEEEECCCCEEEEecccccccCC
Confidence 99999965 699999999999876567899777654321 246999999999999999999999999 889
Q ss_pred CCCCCCC
Q 035660 442 DCELLDD 448 (448)
Q Consensus 442 ~C~~~~~ 448 (448)
+|++.++
T Consensus 393 ~C~~~~~ 399 (403)
T 3aup_A 393 KCADLFN 399 (403)
T ss_dssp CGGGSCC
T ss_pred Ccccccc
Confidence 9988653
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=2e-56 Score=447.45 Aligned_cols=298 Identities=19% Similarity=0.309 Sum_probs=242.4
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCc
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQC 171 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~ 171 (448)
..+.+|+++|.||||||+|.|++||||+++||+|..|..|..+.++.|||++|+|++. .+|
T Consensus 53 ~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~-------------------~~~ 113 (370)
T 3psg_A 53 YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEA-------------------TSQ 113 (370)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEE-------------------EEE
T ss_pred ccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEE-------------------CCc
Confidence 4578999999999999999999999999999999999875555789999999999998 478
Q ss_pred eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCc------hhhhh---
Q 035660 172 LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLS------LVSQL--- 240 (448)
Q Consensus 172 ~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s------~~~ql--- 240 (448)
.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||+....+. |. ...+||||||++.++ ++.+|
T Consensus 114 ~~~i~Yg~Gs-~~G~~~~Dtv~ig~-----~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q 187 (370)
T 3psg_A 114 ELSITYGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQ 187 (370)
T ss_dssp EEEEESSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHT
T ss_pred EEEEEeCCce-EEEEEEEEEEeeCC-----cccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHHHHHHC
Confidence 9999999998 89999999999998 89999999999988662 32 348999999998765 33333
Q ss_pred ----cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 ----GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 ----~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
.++||+||.+.. ...|.|+||+ .|. ++.|+|+ ..+.+|.|.+++|+|+++.+... ++
T Consensus 188 g~i~~~~FS~~L~~~~---~~~G~l~fGg-~D~~~y~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~---------~~ 253 (370)
T 3psg_A 188 GLVSQDLFSVYLSSND---DSGSVVLLGG-IDSSYYTGSLNWVPV-SVEGYWQITLDSITMDGETIACS---------GG 253 (370)
T ss_dssp TCSSSSEEEEEEC--------CEEEEETC-CCGGGBSSCCEEEEC-SEETTEEEEECEEESSSSEEECT---------TC
T ss_pred CCCCCCEEEEEEccCC---CCCeEEEEEe-eChHhcCCcceeecc-cccceeEEEEeEEEECCEEEecC---------CC
Confidence 579999999852 2348899995 444 4567777 45689999999999999877532 25
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEE
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQ 391 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 391 (448)
..+||||||+++++|++++++|.+++++.. .......++|+. ...+|+|+|+|+ |++++||+++|+++
T Consensus 254 ~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~~g~~~v~C~~------~~~lP~i~f~~~-g~~~~l~~~~yi~~ 321 (370)
T 3psg_A 254 CQAIVDTGTSLLTGPTSAIANIQSDIGASE-----NSDGEMVISCSS------IDSLPDIVFTID-GVQYPLSPSAYILQ 321 (370)
T ss_dssp EEEEECTTCCSEEEEHHHHHHHHHHTTCEE-----CTTCCEECCGGG------GGGCCCEEEEET-TEEEEECHHHHEEE
T ss_pred ceEEEcCCCCcEECCHHHHHHHHHHhCCcc-----cCCCcEEEECCC------cccCCcEEEEEC-CEEEEECHHHhccc
Confidence 789999999999999999999999986542 111222689987 357999999997 89999999999998
Q ss_pred eCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 392 RWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
. +..|+..+...+.....++.||||++|||++|+|||++++|||||+++
T Consensus 322 -~-~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 322 -D-DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp -C-SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred -C-CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 3 346997554433211112369999999999999999999999999974
No 4
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=6.1e-56 Score=437.01 Aligned_cols=300 Identities=20% Similarity=0.285 Sum_probs=246.5
Q ss_pred cccccccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 035660 86 ADVFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKC 165 (448)
Q Consensus 86 ~~~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C 165 (448)
+.+.+...+.+|+++|.||||||++.|++||||+++||+|.+|..| .+.++.|||++|+|++.
T Consensus 6 v~~~~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c-~~~~~~y~~~~SsT~~~---------------- 68 (325)
T 2apr_A 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTKYDPNQSSTYQA---------------- 68 (325)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC-CTTSCCBCGGGCTTCEE----------------
T ss_pred eeeeecCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH-hcCCCCCCcccCCCeee----------------
Confidence 3444567788999999999999999999999999999999999999 67889999999999998
Q ss_pred CCCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC-CCcceeeecCCCCCc-------hh
Q 035660 166 NFLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED-RHLSGVFGLGFSRLS-------LV 237 (448)
Q Consensus 166 ~~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~GilGLg~~~~s-------~~ 237 (448)
..|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||+..++ ++
T Consensus 69 ---~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 140 (325)
T 2apr_A 69 ---DGRTWSISYGDGSSASGILAKDNVNLGG-----LLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM 140 (325)
T ss_dssp ---EEEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHH
T ss_pred ---CCCEEEEEECCCCCEEEEEEEEEEEECC-----EEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHH
Confidence 4789999999998889999999999987 8999999999998765332 238999999998764 44
Q ss_pred hhh-------cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 238 SQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 238 ~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
+|| .++||+||.+... ...|.|+||+.+. ..+.|+|+...+.+|.|.+++|+||+ .+..
T Consensus 141 ~~l~~qg~i~~~~FS~~l~~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~-~~~~------- 210 (325)
T 2apr_A 141 DNLISQGLISRPIFGVYLGKAKN--GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGT-STVA------- 210 (325)
T ss_dssp HHHHHTTSCSSSEEEEEECCGGG--TCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETT-EEEE-------
T ss_pred HHHHhcCCCCCceEEEEecCCCC--CCCCEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECC-EecC-------
Confidence 444 5799999976322 2358899995432 34568888546789999999999999 3321
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
....+||||||++++||+++|+++.+++.+.+.. . ....++|+. ..+|+|+|+|+ |.+++||++
T Consensus 211 ---~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~----~-g~~~~~C~~-------~~~p~i~f~f~-g~~~~ip~~ 274 (325)
T 2apr_A 211 ---SSFDGILDTGTTLLILPNNIAASVARAYGASDNG----D-GTYTISCDT-------SAFKPLVFSIN-GASFQVSPD 274 (325)
T ss_dssp ---CCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECS----S-SCEEECSCG-------GGCCCEEEEET-TEEEEECGG
T ss_pred ---CCceEEEecCCccEECCHHHHHHHHHHHhcccCC----C-CeEEEECCC-------CCCCcEEEEEC-CEEEEECHH
Confidence 1468999999999999999999999998765421 1 122578985 35899999998 559999999
Q ss_pred ceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++.. +..|++.+...+. +.||||++|||++|+|||++++|||||+++
T Consensus 275 ~~~~~~~-~~~C~~~i~~~~~-----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 275 SLVFEEF-QGQCIAGFGYGNW-----GFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp GGEEEEE-TTEEEESEEEESS-----SSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HEEEcCC-CCeEEEEEEcCCC-----CCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 9998765 5689986654332 369999999999999999999999999864
No 5
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=7e-56 Score=438.29 Aligned_cols=294 Identities=20% Similarity=0.287 Sum_probs=243.1
Q ss_pred cccccceEEEEEEecCCCceEEEEEeCCCCceEEEcC--CCCCC-------CCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 035660 90 PSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR--PCLDC-------SQQFGPIFDPSMSSSYADLPCYSEYCWYS 160 (448)
Q Consensus 90 ~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~--~C~~C-------~~~~~~~ydp~~Sst~~~~~C~s~~C~~~ 160 (448)
....+.+|+++|.||||||++.|++||||+++||+|. +|..| ..+.++.|||++|+|++.
T Consensus 7 l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~----------- 75 (334)
T 1j71_A 7 LINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQN----------- 75 (334)
T ss_dssp EEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEE-----------
T ss_pred EecCCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCccc-----------
Confidence 3445689999999999999999999999999999876 67643 113678999999999998
Q ss_pred CCCCCCCCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCC------
Q 035660 161 PNVKCNFLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRL------ 234 (448)
Q Consensus 161 ~~~~C~~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~------ 234 (448)
.+|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++... ..+||||||+..+
T Consensus 76 --------~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~ 137 (334)
T 1j71_A 76 --------LNQDFSIEYGDLTSSQGSFYKDTVGFGG-----ISIKNQQFADVTTTS-----VDQGIMGIGFTADEAGYNL 137 (334)
T ss_dssp --------EEEEEEEEBTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEES-----SSSCEEECSCGGGSSTTCC
T ss_pred --------CCCceEEEECCCCEEEEEEEEEEEEECC-----EEEccEEEEEEEecC-----CCccEEEEcCCcccCcccc
Confidence 4789999999998789999999999997 899999999999764 4799999999865
Q ss_pred --chhhhh-------cCceeEeccCCCCCCCcceeEEeCCCCCCCC-----ccccccccCceEEEEEeEEEEcCEEeecC
Q 035660 235 --SLVSQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARIEG-----DSTPLEVINGRYYITLEAISIGGKMLDID 300 (448)
Q Consensus 235 --s~~~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~~-----~~~pl~~~~~~y~v~l~~i~vg~~~~~~~ 300 (448)
+++.|| +++||+||.+.. ...|.|+||+ .|..+ .|+|+ ....+|.|.|++|+|+++.+..
T Consensus 138 ~~~~~~~L~~qg~i~~~~Fs~~l~~~~---~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g~~~~~- 211 (334)
T 1j71_A 138 YDNVPVTLKKQGIINKNAYSLYLNSED---ASTGKIIFGG-VDNAKYTGTLTALPV-TSSVELRVHLGSINFDGTSVST- 211 (334)
T ss_dssp CCCHHHHHHHTTSCSSSEEEEECCCTT---CSEEEEEETE-EETTSEEEEEEEEEC-CCSSSCEEEEEEEEETTEEEEE-
T ss_pred CCcHHHHHHHCCCCCccEEEEEeCCCC---CCCeEEEEee-echHHccCceEEEEc-cCCCeEEEEEeEEEECCEeccC-
Confidence 456665 579999998742 2358899994 55443 56777 4556999999999999988753
Q ss_pred CccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCc-ccceeccCCCccccCCeEEEEEcCCc
Q 035660 301 PDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSW-TLCYRGTASHDLIGFPAVTFHFAGGA 379 (448)
Q Consensus 301 ~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~gg~ 379 (448)
...+||||||++++||+++|++|.+++.+.+. ....... ++|+. +|+|+|+|.+|+
T Consensus 212 ----------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~----~~~~~~~~~~C~~---------~p~i~f~f~~g~ 268 (334)
T 1j71_A 212 ----------NADVVLDSGTTITYFSQSTADKFARIVGATWD----SRNEIYRLPSCDL---------SGDAVFNFDQGV 268 (334)
T ss_dssp ----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE----TTTTEEECSSSCC---------CSEEEEEESTTC
T ss_pred ----------CccEEEeCCCCcEecCHHHHHHHHHHcCCccc----CCCceEEEEcCCC---------CCceEEEEcCCc
Confidence 35799999999999999999999999976541 1111124 78964 799999996689
Q ss_pred EEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCCC
Q 035660 380 ELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLDD 448 (448)
Q Consensus 380 ~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~~ 448 (448)
+++||+++|+++..++..|++.+...+ .||||+.|||++|+|||++++|||||+++|+..+|
T Consensus 269 ~~~i~~~~y~~~~~~~~~C~~~i~~~~-------~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~ 330 (334)
T 1j71_A 269 KITVPLSELILKDSDSSICYFGISRND-------ANILGDNFLRRAYIVYDLDDKTISLAQVKYTSSSD 330 (334)
T ss_dssp EEEEEGGGGEEECSSSSCEEESEEECT-------TCEECHHHHTTEEEEEETTTTEEEEEEECCCSCCC
T ss_pred EEEECHHHheeecCCCCeeEEEEeECC-------CcEEChHhhccEEEEEECCCCEEEEEecCCCCccc
Confidence 999999999999765556997666542 49999999999999999999999999999987543
No 6
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=5e-56 Score=438.38 Aligned_cols=298 Identities=21% Similarity=0.257 Sum_probs=243.9
Q ss_pred cccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 90 PSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 90 ~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
+...+.+|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+|++.++
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~------------------ 71 (329)
T 3c9x_A 10 SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS------------------ 71 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT------------------
T ss_pred CCCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC------------------
Confidence 45677899999999999999999999999999999999999877788999999999999863
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCch---------hh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLSL---------VS 238 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s~---------~~ 238 (448)
.|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||+..++. ++
T Consensus 72 ~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~ 146 (329)
T 3c9x_A 72 GASWSISYGDGSSSSGDVYTDKVTIGG-----FSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFS 146 (329)
T ss_dssp TCBEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CCeEEEEeCCCCcEEEEEEEEEEEECC-----EEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHH
Confidence 689999999999889999999999987 8999999999998765432 2589999999976653 33
Q ss_pred h----h-cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 239 Q----L-GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 239 q----l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
+ + .++||+||.+. ..|.|+||+.+. ..+.|+|+...+.+|.|.|++|+|+++.+..
T Consensus 147 ~l~~~i~~~~FS~~l~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~---------- 211 (329)
T 3c9x_A 147 NAASSLAEPLFTADLRHG-----QNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNR---------- 211 (329)
T ss_dssp HHHTTSSSSEEEEECCSS-----SCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCCS----------
T ss_pred HHHHhcCCCEEEEEecCC-----CCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEeccC----------
Confidence 3 3 68999999862 348899995432 3456788854678999999999999986531
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
....+||||||++++||++++++|.+++.++. +........++|+. .+|+|+|+|+ |++++||+++|+
T Consensus 212 ~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~---~~~~~~~~~~~C~~--------~~P~i~f~f~-g~~~~ip~~~~~ 279 (329)
T 3c9x_A 212 NSIDGIADTGTTLLLLDDNVVDAYYANVQSAQ---YDNQQEGVVFDCDE--------DLPSFSFGVG-SSTITIPGDLLN 279 (329)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTCTTCE---EETTTTEEEEETTC--------CCCCEEEEET-TEEEEECGGGGE
T ss_pred CCceEEEECCCCcEeCCHHHHHHHHHhCCCcE---EcCCCCEEEEECCC--------CCCcEEEEEC-CEEEEECHHHee
Confidence 14689999999999999999999999874432 11111112468974 5899999998 899999999999
Q ss_pred EEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 390 FQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 390 ~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
+...+ ...|++.+...+. .+.||||++|||++|+|||++++|||||+.
T Consensus 280 ~~~~~~~~~~C~~~i~~~~~----~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 280 LTPLEEGSSTCFGGLQSSSG----IGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp EEESSTTCSEEEESEEECTT----TTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred eeccCCCCCeEEEEEEcCCC----CCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 88643 3789985543322 146999999999999999999999999974
No 7
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-55 Score=435.75 Aligned_cols=304 Identities=21% Similarity=0.325 Sum_probs=241.5
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC--CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL--DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~--~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
.+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+|++. .+
T Consensus 21 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~~ 79 (351)
T 1tzs_A 21 LDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACK--THSRFQPSQSSTYSQ-------------------PG 79 (351)
T ss_dssp SSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGT--TSCCBCGGGCTTCBC-------------------CS
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccC--CCCcCCcccCcceEE-------------------CC
Confidence 5688999999999999999999999999999999998 476 678999999999988 58
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-c-CCCcceeeecCCCCCc------hhhhh--
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGFSRLS------LVSQL-- 240 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s------~~~ql-- 240 (448)
|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+. | ....+||||||++.++ ++.+|
T Consensus 80 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~ 153 (351)
T 1tzs_A 80 QSFSIQYGTGS-LSGIIGADQVSVEG-----LTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMA 153 (351)
T ss_dssp CEEEEESSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHH
T ss_pred CEEEEEeCCCC-eEEEEEEeEEEECC-----eEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHH
Confidence 99999999998 89999999999987 89999999999987653 3 2347999999998765 33333
Q ss_pred -----cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 -----GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 -----~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
+++||+||.+.... ...|.|+||+.+. ..+.|+|+ ..+.+|.|.|++|+|+++.+... ..
T Consensus 154 qg~i~~~~FS~~L~~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~---------~~ 222 (351)
T 1tzs_A 154 QNLVDLPMFSVYMSSNPEG-GAGSELIFGGYDHSHFSGSLNWVPV-TKQAYWQIALDNIQVGGTVMFCS---------EG 222 (351)
T ss_dssp TTCCSSSEEEEECCCCC---CTTCEEEETSCCGGGBCSCCEEEEC-SEETTEEEEEEEEEETTEEEECT---------TC
T ss_pred CCCCCCCEEEEEEcCCCCC-CCCCEEEECCCCHHHcCCceEEEec-CCCceEEEEeCEEEECCceEEcC---------CC
Confidence 58999999985332 1248899995432 34567887 45689999999999999876321 25
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEE
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQ 391 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 391 (448)
..+||||||++++||+++|++|.+++.+.. .. ....++|+. ...+|+|+|+|+ |++++||+++|+++
T Consensus 223 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~----~~--g~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~yi~~ 289 (351)
T 1tzs_A 223 CQAIVDTGTSLITGPSDKIKQLQNAIGAAP----VD--GEYAVECAN------LNVMPDVTFTIN-GVPYTLSPTAYTLL 289 (351)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCEE----CS--SSEEECGGG------GGGSCCEEEEET-TEEEEECTTTSEEC
T ss_pred ceEEeccCCcceeCCHHHHHHHHHHhCCcc----cC--CeEEEeCCC------CccCCcEEEEEC-CEEEEECHHHhEee
Confidence 689999999999999999999999986542 11 222578987 357999999997 89999999999988
Q ss_pred eCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 392 RWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 392 ~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
..+ +..|+..+...+.+....+.||||++|||++|+|||++++|||||+++|....
T Consensus 290 ~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s~~ 347 (351)
T 1tzs_A 290 DFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWSHP 347 (351)
T ss_dssp C-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC-----
T ss_pred ccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcccch
Confidence 653 35799644333211111247999999999999999999999999999997643
No 8
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=9.3e-56 Score=436.45 Aligned_cols=297 Identities=19% Similarity=0.228 Sum_probs=241.9
Q ss_pred cccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 90 PSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 90 ~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
+...+.+|+++|.||||||++.|++||||+++||+|.+|..|.. .++.|||++|+|++.++
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-~~~~y~~~~SsT~~~~~------------------ 70 (329)
T 1oew_A 10 IDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV-XQTIYTPSKSTTAKLLS------------------ 70 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC--CCCBCGGGCTTCEEEE------------------
T ss_pred cCCCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc-ccCccCCccCccceecC------------------
Confidence 45577899999999999999999999999999999999999876 68899999999999863
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCch---------hh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLSL---------VS 238 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s~---------~~ 238 (448)
.|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||+..++. ++
T Consensus 71 ~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~ 145 (329)
T 1oew_A 71 GATWSISYGDGSSSSGDVYTDTVSVGG-----LTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFD 145 (329)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CCeEEEEeCCCCcEEEEEEEEEEEECC-----EEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHH
Confidence 689999999999789999999999997 8999999999998765332 2579999999986653 33
Q ss_pred hh-----cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 239 QL-----GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 239 ql-----~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
|| .++||+||.+. ..|.|+||+.+. ..+.|+|+...+.+|.|.|++|+|+++.+..
T Consensus 146 ~l~~~i~~~~FS~~L~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~---------- 210 (329)
T 1oew_A 146 NAKASLDSPVFTADLGYH-----APGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKS---------- 210 (329)
T ss_dssp HHTTTSSSSEEEEECCSS-----SCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCEE----------
T ss_pred HHHHhccCcEEEEEccCC-----CCeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeeccC----------
Confidence 43 68999999862 348899995432 2456788854678999999999999976531
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
....+||||||++++||++++++|.+++.++. +........++|+. .+|+|+|+|+ |++++||+++|+
T Consensus 211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~~--------~~P~i~f~fg-g~~~~ip~~~~~ 278 (329)
T 1oew_A 211 TSIDGIADTGTTLLYLPATVVSAYWAQVSGAK---SSSSVGGYVFPCSA--------TLPSFTFGVG-SARIVIPGDYID 278 (329)
T ss_dssp EEEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTTEEEEETTC--------CCCCEEEEET-TEEEEECHHHHE
T ss_pred CCceEEEeCCCCCEECCHHHHHHHHHhCCCcE---EcCCCCEEEEECCC--------CCCcEEEEEC-CEEEEECHHHee
Confidence 14689999999999999999999999874432 11111112578984 5899999996 999999999999
Q ss_pred EEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEEC-CCCEEEEecC
Q 035660 390 FQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDI-GGKKLAFERV 441 (448)
Q Consensus 390 ~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~-~~~riGfa~~ 441 (448)
+...+ ...|++.+...+. .+.||||++|||++|+|||+ +++|||||+.
T Consensus 279 ~~~~~~~~~~C~~~i~~~~~----~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 279 FGPISTGSSSCFGGIQSSAG----IGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp EEESSTTCSEEEESEEESTT----TSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred eeecCCCCCeEEEEEEeCCC----CCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 87633 4689986554332 14699999999999999999 9999999974
No 9
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=2.5e-55 Score=435.78 Aligned_cols=296 Identities=18% Similarity=0.313 Sum_probs=242.2
Q ss_pred cccccceEEEEEEecCCCceEEEEEeCCCCceEEEcC--CCCCCC-------CCCCCCCCCCCCCCccccCCCCCCCCCC
Q 035660 90 PSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR--PCLDCS-------QQFGPIFDPSMSSSYADLPCYSEYCWYS 160 (448)
Q Consensus 90 ~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~--~C~~C~-------~~~~~~ydp~~Sst~~~~~C~s~~C~~~ 160 (448)
+...+.+|+++|.||||+|++.|++||||+++||+|. +|..|. .+.++.|||++|+|++.
T Consensus 7 l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~----------- 75 (342)
T 2qzx_A 7 LHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQN----------- 75 (342)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEE-----------
T ss_pred EecCCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCccc-----------
Confidence 3345689999999999999999999999999999866 676431 12678999999999998
Q ss_pred CCCCCCCCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCC------
Q 035660 161 PNVKCNFLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRL------ 234 (448)
Q Consensus 161 ~~~~C~~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~------ 234 (448)
.+|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++... ..+||||||+..+
T Consensus 76 --------~~~~~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~-----~~~GilGLg~~~~~~~~~~ 137 (342)
T 2qzx_A 76 --------LNTRFDIKYGDGSYAKGKLYKDTVGIGG-----VSVRDQLFANVWSTS-----ARKGILGIGFQSGEATEFD 137 (342)
T ss_dssp --------EEEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEC-----SSSCEEECSCGGGCSSSSC
T ss_pred --------CCCcEEEEeCCCCeEEEEEEEEEEEECC-----EEecceEEEEEEecC-----CCcCEEEEccccccCCCcc
Confidence 4789999999998789999999999997 899999999999764 4799999999765
Q ss_pred --chhhhh-------cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEeecC
Q 035660 235 --SLVSQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKMLDID 300 (448)
Q Consensus 235 --s~~~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~ 300 (448)
+++.|| +++||+||.+.. ...|.|+||+ .|. .+.|+|+ ....+|.|.|++|+|+++.+..
T Consensus 138 ~~~~~~~L~~qg~i~~~~Fs~~l~~~~---~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g~~~~~- 211 (342)
T 2qzx_A 138 YDNLPISLRNQGIIGKAAYSLYLNSAE---ASTGQIIFGG-IDKAKYSGSLVDLPI-TSEKKLTVGLRSVNVRGRNVDA- 211 (342)
T ss_dssp CCCHHHHHHHTTSSSSSEEEEECCCTT---CSEEEEEETE-EETTSBSSCCEEEEC-CCSSSCEEEEEEEEETTEEEEE-
T ss_pred CccHHHHHHHCCCcCccEEEEEeCCCC---CCCeEEEECc-cchhhEecceEEEec-cCCceEEEEEeEEEECCEecCC-
Confidence 556665 479999998742 2358899995 443 4567777 4456999999999999988753
Q ss_pred CccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc-CCcccceeccCCCccccCCeEEEEEcCCc
Q 035660 301 PDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF-DSWTLCYRGTASHDLIGFPAVTFHFAGGA 379 (448)
Q Consensus 301 ~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~P~i~~~f~gg~ 379 (448)
...+||||||++++||+++|++|.+++.+.+.. ..... ...++|+. +|+|+|+|.+|+
T Consensus 212 ----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~--~~~~~~~~~~~C~~---------~p~i~f~f~~g~ 270 (342)
T 2qzx_A 212 ----------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKF--DSAGNKVYVADCKT---------SGTIDFQFGNNL 270 (342)
T ss_dssp ----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE--CTTSCEEEEECTTC---------CCEEEEEETTTE
T ss_pred ----------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeee--ccCCCcEEEEECCC---------CCcEEEEECCCc
Confidence 357999999999999999999999999765421 11111 12568964 799999997689
Q ss_pred EEEECCCceEEEeC-----CCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCCC
Q 035660 380 ELVLDVDSLFFQRW-----PHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLDD 448 (448)
Q Consensus 380 ~~~l~~~~y~~~~~-----~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~~ 448 (448)
+++||+++|+++.. .+..|++.+...+ .||||++|||++|+|||++++|||||+++|+...|
T Consensus 271 ~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~~-------~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~ 337 (342)
T 2qzx_A 271 KISVPVSEFLFQTYYTSGKPFPKCEVRIRESE-------DNILGDNFLRSAYVVYNLDDKKISMAPVKYTSESD 337 (342)
T ss_dssp EEEEEGGGGEECCBCTTSCBCSSEEESEEECS-------SCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCC
T ss_pred EEEEcHHHhcccccccCCCCCCccEEEEecCC-------CcEeChHhhhcEEEEEECCCCEEEEEeeCCCCCCC
Confidence 99999999998742 2457998766542 49999999999999999999999999999987543
No 10
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=6.6e-55 Score=430.51 Aligned_cols=297 Identities=20% Similarity=0.366 Sum_probs=240.6
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
.+.+|+++|.||||||++.|++||||+++||+|.+|.. |. .++.|||++|+|++. .+
T Consensus 11 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~~ 69 (329)
T 1dpj_A 11 LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF--LHSKYDHEASSSYKA-------------------NG 69 (329)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEE-------------------EE
T ss_pred CCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccC--CcCcCCcccCcCeEE-------------------CC
Confidence 45789999999999999999999999999999999998 75 568999999999987 57
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCch----------hh
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLSL----------VS 238 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s~----------~~ 238 (448)
|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+ .|. ...+||||||+..+++ .+
T Consensus 70 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~ 143 (329)
T 1dpj_A 70 TEFAIQYGTGS-LEGYISQDTLSIGD-----LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQ 143 (329)
T ss_dssp EEEEEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHH
T ss_pred cEEEEEECCce-EEEEEEEEEEEECC-----eEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHh
Confidence 99999999995 89999999999987 8999999999998765 232 2489999999988763 23
Q ss_pred h--h-cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccccC
Q 035660 239 Q--L-GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWD 310 (448)
Q Consensus 239 q--l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~ 310 (448)
| + .++||+||.+........|.|+||+ .|.. +.|+|+ ..+.+|.|.|++|+|+++.+...
T Consensus 144 qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~---------- 211 (329)
T 1dpj_A 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGG-IDESKFKGDITWLPV-RRKAYWEVKFEGIGLGDEYAELE---------- 211 (329)
T ss_dssp TTCCSSSEEEEEECCGGGTCSSSEEEEESS-CCGGGEEEEEEEEEC-SSBTTBEEEEEEEEETTEEEECS----------
T ss_pred cCCcCCCEEEEEecCCCCCCCCCcEEEEcC-CChhhcCCceEEEEc-CCCceEEEEeeeEEECCeEecCC----------
Confidence 3 2 5899999987532122348899995 5443 457777 45689999999999999887532
Q ss_pred CCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEE
Q 035660 311 NGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFF 390 (448)
Q Consensus 311 ~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~ 390 (448)
+..+||||||++++||++++++|.+++.+.. .......++|+. ...+|+|+|+|+ |++++||+++|++
T Consensus 212 ~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~-----~~~g~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~~ 279 (329)
T 1dpj_A 212 SHGAAIDTGTSLITLPSGLAEMINAEIGAKK-----GWTGQYTLDCNT------RDNLPDLIFNFN-GYNFTIGPYDYTL 279 (329)
T ss_dssp SCEEEECTTCSCEEECHHHHHHHHHHHTCEE-----CTTSSEEECGGG------GGGCCCEEEEET-TEEEEECTTTSEE
T ss_pred CccEEeeCCCCcEECCHHHHHHHHHHhCCcc-----CCCCeEEEECCC------CCcCCcEEEEEC-CEEEEECHHHhEe
Confidence 5789999999999999999999999985431 111112568986 357999999998 8999999999999
Q ss_pred EeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 391 QRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 391 ~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+.. ..|+..+...+......+.||||++|||++|+|||++++|||||+++
T Consensus 280 ~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 280 EVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 874 57995443322111112479999999999999999999999999874
No 11
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=6.4e-55 Score=432.41 Aligned_cols=297 Identities=16% Similarity=0.290 Sum_probs=244.7
Q ss_pred cccccccceEEEEEEecCCCceEEEEEeCCCCceEEE-----cCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 035660 88 VFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQ-----CRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPN 162 (448)
Q Consensus 88 ~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~-----~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~ 162 (448)
++....+..|+++|.||||||++.|++||||+++||+ |.+|..|. .++.|||++|+|++.
T Consensus 5 ~~l~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~--~~~~y~~~~SsT~~~------------- 69 (339)
T 3fv3_A 5 LSLINEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCK--SSGTFTPSSSSSYKN------------- 69 (339)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTT--TTCCBCGGGCTTCEE-------------
T ss_pred eEEEcCCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCC--CCCcCCCccCcceee-------------
Confidence 3444556899999999999999999999999999998 66666787 578999999999998
Q ss_pred CCCCCCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCCc-------
Q 035660 163 VKCNFLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLS------- 235 (448)
Q Consensus 163 ~~C~~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s------- 235 (448)
..|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+ .+||||||++.++
T Consensus 70 ------~~~~~~i~Yg~gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~-----~~GilGLg~~~~~~~~~~~~ 133 (339)
T 3fv3_A 70 ------LGAAFTIRYGDGSTSQGTWGKDTVTING-----VSITGQQIADVTQTSV-----DQGILGIGYTSNEAVYDTSG 133 (339)
T ss_dssp ------EEEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEESS-----SSCEEECSCGGGCCCBCTTS
T ss_pred ------CCceEEEEECCCceEEEEEEEEEEEECC-----EEECceEEEEEEecCC-----CceeEEecCccccccccccc
Confidence 4789999999998799999999999998 8999999999998764 6999999997653
Q ss_pred ---------hhhhh-------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcC
Q 035660 236 ---------LVSQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGG 294 (448)
Q Consensus 236 ---------~~~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~ 294 (448)
++.|| +++||+||.+.. ...|.|+||+ .|.. +.|+|+ ..+.+|.|+|++|+|++
T Consensus 134 ~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~---~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g 208 (339)
T 3fv3_A 134 RQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPS---AETGTIIFGG-VDNAKYSGKLVAEQV-TSSQALTISLASVNLKG 208 (339)
T ss_dssp CBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTT---CSEEEEEETE-EETTSBSSCCEEEEB-CCSSSCEEEEEEEEESS
T ss_pred cccCccCCcHHHHHHHCCCCCCceEEEEECCCC---CCCeEEEEee-echHHeecceEEEec-ccCccEEEEEEEEEECC
Confidence 56666 479999998743 2358899994 4443 456776 44569999999999999
Q ss_pred EEeecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEE
Q 035660 295 KMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFH 374 (448)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~ 374 (448)
+.+.. +..+||||||++++||++++++|.+++.+.+... ........++|+. ..+|+|+|+
T Consensus 209 ~~~~~-----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~-~~~~~~~~~~C~~-------~~~p~i~f~ 269 (339)
T 3fv3_A 209 SSFSF-----------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQV-ARDQYLYFIDCNT-------DTSGTTVFN 269 (339)
T ss_dssp CEEEE-----------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEE-ETTEEEEEECTTC-------CCCSEEEEE
T ss_pred EeecC-----------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccc-cccCceEEEecCC-------CCCCcEEEE
Confidence 88753 3579999999999999999999999998654210 0011122679986 468999999
Q ss_pred EcCCcEEEECCCceEEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 375 FAGGAELVLDVDSLFFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 375 f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
|++|++++||+++|+++.. +..|+..+... +.||||+.|||++|+|||++++|||||+++|++.+
T Consensus 270 f~~g~~~~v~~~~~~~~~~-~~~C~~~i~~~-------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~~s 334 (339)
T 3fv3_A 270 FGNGAKITVPNTEYVYQNG-DGTCLWGIQPS-------DDTILGDNFLRHAYLLYNLDANTISIAQVKYTTDS 334 (339)
T ss_dssp ETTSCEEEEEGGGGEEECS-SSCEEESEEEC-------SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCC
T ss_pred ECCCCEEEECHHHheeeCC-CCeEEEEEEeC-------CcEEeChHHHhCEEEEEECCCCEEEEEecCCCCcc
Confidence 9768999999999999864 35686544432 25999999999999999999999999999999654
No 12
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=1e-54 Score=434.51 Aligned_cols=301 Identities=18% Similarity=0.276 Sum_probs=246.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC---CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL---DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFL 168 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~---~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~ 168 (448)
..+..|+++|.||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+|++.
T Consensus 15 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~------------------- 73 (361)
T 1mpp_A 15 FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCV--GKRFFDPSSSSTFKE------------------- 73 (361)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCC--SSCCBCGGGCTTCEE-------------------
T ss_pred CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCC--CCCcCCCccCCceEe-------------------
Confidence 35689999999999999999999999999999999998 687 578999999999998
Q ss_pred CCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC------CcC-CCcceeeecCCCCCchh----
Q 035660 169 NQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK------FED-RHLSGVFGLGFSRLSLV---- 237 (448)
Q Consensus 169 ~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~------~~~-~~~~GilGLg~~~~s~~---- 237 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+ .|. ...+||||||++.++..
T Consensus 74 ~~~~~~i~Yg~Gs-~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 147 (361)
T 1mpp_A 74 TDYNLNITYGTGG-ANGIYFRDSITVGG-----ATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEY 147 (361)
T ss_dssp EEEEEEEECSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHH
T ss_pred cCCeEEEEECCce-EEEEEEEEEEEECC-----EEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccc
Confidence 4789999999998 89999999999997 8999999999998754 332 34899999999866543
Q ss_pred --------hhh-------cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCc---eEEEEEeEEEEcCE
Q 035660 238 --------SQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVING---RYYITLEAISIGGK 295 (448)
Q Consensus 238 --------~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~---~y~v~l~~i~vg~~ 295 (448)
.+| .++||+||.+. ...|.|+||+.+. ..+.|+|+..... +|.|.|++|+|+++
T Consensus 148 ~~~~~~~~~~l~~~g~i~~~~FS~~l~~~----~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~ 223 (361)
T 1mpp_A 148 GDTYNTVHVNLYKQGLISSPVFSVYMNTN----DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGS 223 (361)
T ss_dssp SCCCCCHHHHHHHTTSSSSSEEEEECCCS----SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTE
T ss_pred cccCCCHHHHHHHcCCCCCcEEEEEecCC----CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCe
Confidence 333 57999999984 2348899995432 3457888843333 99999999999998
Q ss_pred EeecCCccccccccCCCceE-EeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccC-CeEEE
Q 035660 296 MLDIDPDIFTRKTWDNGGVI-IDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGF-PAVTF 373 (448)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~i-iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~-P~i~~ 373 (448)
.+..+ ....+| |||||++++||+++|++|.+++.+.+ ........++|+. ...+ |+|+|
T Consensus 224 ~~~~~---------~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~----~~~~g~~~~~C~~------~~~~~p~i~f 284 (361)
T 1mpp_A 224 DAVSF---------DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDA----TESQQGYTVPCSK------YQDSKTTFSL 284 (361)
T ss_dssp EEEEE---------EEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTC----EEETTEEEEEHHH------HTTCCCEEEE
T ss_pred eeccC---------CCCEEEEECCCCCceeCCHHHHHHHHHHhCCcc----cCCCCcEEEECCC------cccCCCcEEE
Confidence 86422 146899 99999999999999999999986643 1111122578987 3467 99999
Q ss_pred EE--cC----CcEEEECCCceEEEeCC-CeEEE-EEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCC
Q 035660 374 HF--AG----GAELVLDVDSLFFQRWP-HSFCM-AVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCEL 445 (448)
Q Consensus 374 ~f--~g----g~~~~l~~~~y~~~~~~-~~~C~-~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~ 445 (448)
+| ++ |++|+||+++|+++... +..|+ ++... .. +.||||++|||++|+|||++++|||||+++|+.
T Consensus 285 ~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~-~~-----~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~~ 358 (361)
T 1mpp_A 285 VLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD-GG-----NQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGY 358 (361)
T ss_dssp EEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE-SS-----SCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTT
T ss_pred EEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC-CC-----CCEEEChHHhccEEEEEECCCCEEEEEEcccCC
Confidence 99 42 79999999999998753 46899 45443 11 369999999999999999999999999999998
Q ss_pred CCC
Q 035660 446 LDD 448 (448)
Q Consensus 446 ~~~ 448 (448)
..|
T Consensus 359 ~~~ 361 (361)
T 1mpp_A 359 END 361 (361)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 13
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=4e-55 Score=439.15 Aligned_cols=299 Identities=23% Similarity=0.381 Sum_probs=241.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC----CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL----DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNF 167 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~----~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~ 167 (448)
..+.+|+++|.||||||+|.|++||||+++||+|..|. .|. .++.|||++|+||+.
T Consensus 58 ~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~--~~~~y~~~~SsT~~~------------------ 117 (383)
T 2x0b_A 58 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKH------------------ 117 (383)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHH--TSCCBCGGGCTTCEE------------------
T ss_pred cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCccccc--CCCCCCCCCCCcEEE------------------
Confidence 45689999999999999999999999999999999997 486 578999999999998
Q ss_pred CCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-c-CCCcceeeecCCCCCch---------
Q 035660 168 LNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGFSRLSL--------- 236 (448)
Q Consensus 168 ~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s~--------- 236 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++ +.++ +.|||++...+. | ...++||||||++.++.
T Consensus 118 -~~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-----~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~ 189 (383)
T 2x0b_A 118 -NGTELTLRYSTGT-VSGFLSQDIITVGG-----ITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDN 189 (383)
T ss_dssp -EEEEEEEECSSCE-EEEEEEEEEEEETT-----EEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHH
T ss_pred -CCcEEEEEcCCcc-EEEEEEeeEEEEcC-----ceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHH
Confidence 5899999999998 89999999999998 8899 999999987652 3 23589999999988762
Q ss_pred -hhh--h-cCceeEeccCCCCCC-CcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 237 -VSQ--L-GSTFSYCVGNLNDPY-YFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 237 -~~q--l-~~~FS~~L~~~~~~~-~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
.+| + +++||+||.+..+.. ...|.|+||+ .|.. +.|+|+ ..+.+|.|.|++|+|+++.+...
T Consensus 190 l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg-~d~~~y~G~l~~~pv-~~~~~w~v~l~~i~v~~~~~~~~------ 261 (383)
T 2x0b_A 190 IISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG-SDPQHYEGNFHYINL-IKTGVWQIQMKGVSVGSSTLLCE------ 261 (383)
T ss_dssp HHTTTCCSSSEEEEEECCSCC----CCEEEEESS-CCGGGEEEEEEEEEB-SSTTSCEEEECEEEESSCCCBST------
T ss_pred HHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECC-cChHHcCCceEEEEc-CCCceEEEEEeEEEeCCceEEcC------
Confidence 333 2 589999999853321 1258899995 5543 457777 56789999999999999764211
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
++..+||||||+++++|++++++|.+++++.. ......++|+. ...+|+|+|+|+ |++++||++
T Consensus 262 ---~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~------~~g~~~v~C~~------~~~~P~i~f~~~-g~~~~l~~~ 325 (383)
T 2x0b_A 262 ---DGCLALVDTGASYISGSTSSIEKLMEALGAKK------RLFDYVVKCNE------GPTLPDISFHLG-GKEYTLTSA 325 (383)
T ss_dssp ---TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE------CSSCEEEEGGG------TTTCCCEEEEET-TEEEEECHH
T ss_pred ---CCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc------cCCcEEEeccc------cccCceEEEEEC-CEEEEECHH
Confidence 25789999999999999999999999986432 11222678987 357999999997 899999999
Q ss_pred ceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++..+ +..|+..+...+.+....+.||||++|||++|+|||++++|||||+++
T Consensus 326 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 326 DYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp HHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 99988653 458995443322111112579999999999999999999999999864
No 14
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.3e-54 Score=427.52 Aligned_cols=294 Identities=20% Similarity=0.348 Sum_probs=240.2
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
.+.+|+++|.||||||++.|++||||+++||+|.+|.. |. .++.|||++|+|++. .+
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~~ 68 (324)
T 1am5_A 10 ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACS--NHNKFKPRQSSTYVE-------------------TG 68 (324)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHH--TSCCBCGGGCTTCEE-------------------EE
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccc--CCCcCCCccCCCeEe-------------------CC
Confidence 56899999999999999999999999999999999985 76 578999999999998 47
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCc------hhhhh--
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLS------LVSQL-- 240 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s------~~~ql-- 240 (448)
|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+. |. ...+||||||++.++ ++.+|
T Consensus 69 ~~~~i~Yg~Gs-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~ 142 (324)
T 1am5_A 69 KTVDLTYGTGG-MRGILGQDTVSVGG-----GSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGS 142 (324)
T ss_dssp EEEEEECSSCE-EEEEEEEEEEESSS-----SCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHH
T ss_pred cEEEEEECCCC-eEEEEEECceeECC-----cEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHh
Confidence 89999999998 59999999999997 78999999999987652 32 348999999998765 33333
Q ss_pred -----cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 -----GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 -----~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
.++||+||.+... ..|.|+||+.+. ..+.|+|+ ..+.+|.|.|++|+|+++.+... +
T Consensus 143 qg~i~~~~FS~~l~~~~~---~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~----------~ 208 (324)
T 1am5_A 143 QSLVEKDLFSFYLSGGGA---NGSEVMLGGVDNSHYTGSIHWIPV-TAEKYWQVALDGITVNGQTAACE----------G 208 (324)
T ss_dssp TTCSSSSEEEEECCSTTC---SCEEEEESSCCGGGBCSCCEEEEE-EEETTEEEEECEEEETTEECCCC----------C
T ss_pred cCCCCCCEEEEEecCCCC---CCcEEEECccCHHHcCCceEEEec-CCCcEEEEEEeEEEECCceeecc----------C
Confidence 5799999988532 258899995432 34567787 45679999999999999875321 2
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEE
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQ 391 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 391 (448)
..+||||||++++||+++|++|.+++.+. . ......++|+. ...+|+|+|+|+ |++++||+++|+++
T Consensus 209 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~-----~~g~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~~~ 275 (324)
T 1am5_A 209 CQAIVDTGTSKIVAPVSALANIMKDIGAS-E-----NQGEMMGNCAS------VQSLPDITFTIN-GVKQPLPPSAYIEG 275 (324)
T ss_dssp EEEEECTTCSSEEECTTTHHHHHHHHTCE-E-----CCCCEECCTTS------SSSSCCEEEEET-TEEEEECHHHHEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCc-c-----cCCcEEEeCCC------cccCCcEEEEEC-CEEEEECHHHhccc
Confidence 68999999999999999999999998654 1 11112578987 357999999997 89999999999998
Q ss_pred eCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 392 RWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
. +..|+..+...+.+....+.||||++|||++|+|||++++|||||+++
T Consensus 276 ~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 276 D--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp S--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred C--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 7 567995444332111112479999999999999999999999999874
No 15
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.5e-54 Score=426.82 Aligned_cols=291 Identities=19% Similarity=0.310 Sum_probs=238.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC--CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL--DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~--~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+|++. .
T Consensus 11 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~ 69 (323)
T 3cms_A 11 YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACK--NHQRFDPRKSSTFQN-------------------L 69 (323)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEE-------------------E
T ss_pred ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCccccc--CCCCCCCccCCCeEE-------------------C
Confidence 35689999999999999999999999999999999995 486 578999999999998 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCc------hhhhh-
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLS------LVSQL- 240 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s------~~~ql- 240 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+ .|. ...+||||||++.++ ++.+|
T Consensus 70 ~~~~~i~Yg~Gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~ 143 (323)
T 3cms_A 70 GKPLSIHYGTGS-MQGILGYDTVTVSN-----IVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMM 143 (323)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHH
T ss_pred CcEEEEEeCCCC-eEEEEEEEEEEECC-----eEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHH
Confidence 789999999998 89999999999987 8999999999998765 232 347999999998765 33333
Q ss_pred ------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 241 ------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 241 ------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
.++||+||.+... .|.|+||+ .|.. +.|+|+ ..+.+|.|.|++|+|+++.+.++
T Consensus 144 ~q~~i~~~~FS~~l~~~~~----~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~--------- 208 (323)
T 3cms_A 144 NRHLVAQDLFSVYMDRNGQ----ESMLTLGA-IDPSYYTGSLHWVPV-TVQQYWQFTVDSVTISGVVVACE--------- 208 (323)
T ss_dssp HTTCSSSSEEEEECCTTSS----CEEEEESC-CCGGGEEEEEEEEEC-SSBTTBEEEEEEEEETTEEEEST---------
T ss_pred HCCCCCCCEEEEEECCCCC----CEEEEECC-CChhhccCceEEEEC-ccCCeEEEEEeeEEECCEEeecC---------
Confidence 5899999988432 28899995 5443 457777 45689999999999999887543
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
....+||||||++++||++++++|.+++.+... ......++|+. ...+|+|+|+|+ |++++||+++|+
T Consensus 209 ~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~g~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~ 276 (323)
T 3cms_A 209 GGCQAILDTGTSKLVGPSSDILNIQQAIGATQN-----QYGEFDIDCDN------LSYMPTVVFEIN-GKMYPLTPSAYT 276 (323)
T ss_dssp TCEEEEECTTCCSEEECHHHHHHHHHHHTCEEE-----TTTEEEECTTC------TTTSCCEEEEET-TEEEEECHHHHE
T ss_pred CCcEEEEecCCccEeCCHHHHHHHHHHhCCeec-----CCCcEEEECCC------CccCceEEEEEC-CEEEEECHHHhc
Confidence 146899999999999999999999999854321 11112578987 357999999997 899999999999
Q ss_pred EEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 390 FQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
++ .+..|+..+...+. .+.||||++|||++|+|||++++|||||+++
T Consensus 277 ~~--~~~~C~~~i~~~~~----~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 277 SQ--DQGFCTSGFQSENH----SQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EE--ETTEEEESEEEC-------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cC--CCCEEEEEEEeCCC----CCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 98 35679964433321 1369999999999999999999999999874
No 16
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2e-54 Score=429.40 Aligned_cols=295 Identities=19% Similarity=0.296 Sum_probs=241.5
Q ss_pred cccccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCC--CC---------CCCCCCCCCCCCCCCCCccccCCCCCC
Q 035660 88 VFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRP--CL---------DCSQQFGPIFDPSMSSSYADLPCYSEY 156 (448)
Q Consensus 88 ~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~--C~---------~C~~~~~~~ydp~~Sst~~~~~C~s~~ 156 (448)
++....+++|+++|.||||||++.|++||||+++||+|.. |. .|. .++.|||++|+|++.
T Consensus 5 ~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~--~~~~y~~~~SsT~~~------- 75 (342)
T 3pvk_A 5 VTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCK--QKGTYDPSGSSASQD------- 75 (342)
T ss_dssp EEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGG--TTCCBCGGGCTTCEE-------
T ss_pred eEEecCCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCC--CCCcCCCccCcceee-------
Confidence 3444567899999999999999999999999999998654 53 354 578999999999998
Q ss_pred CCCCCCCCCCCCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCC--
Q 035660 157 CWYSPNVKCNFLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRL-- 234 (448)
Q Consensus 157 C~~~~~~~C~~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-- 234 (448)
.+|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++... ..+||||||+..+
T Consensus 76 ------------~~~~~~i~Yg~gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~-----~~~GilGLg~~~~~~ 133 (342)
T 3pvk_A 76 ------------LNTPFKIGYGDGSSSQGTLYKDTVGFGG-----VSIKNQVLADVDSTS-----IDQGILGVGYKTNEA 133 (342)
T ss_dssp ------------EEEEEEEECSSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEES-----SSSCEEECSCGGGCS
T ss_pred ------------cCCeEEEEecCCCeEEEEEEEEEEEECC-----EEecceEEEEEEccC-----CCccEEEecCccccc
Confidence 4789999999998889999999999998 899999999998765 4799999999873
Q ss_pred -----chhhhh-------cCceeEeccCCCCCCCcceeEEeCCCCCC-----CCccccccccCceEEEEEeEEEEcCEEe
Q 035660 235 -----SLVSQL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARI-----EGDSTPLEVINGRYYITLEAISIGGKML 297 (448)
Q Consensus 235 -----s~~~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~-----~~~~~pl~~~~~~y~v~l~~i~vg~~~~ 297 (448)
+++.|| +++||+||.+.. ...|.|+||+ .|. .+.|+|+ ..+.+|.|+|++|+|+++.+
T Consensus 134 ~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~---~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g~~~ 208 (342)
T 3pvk_A 134 GGSYDNVPVTLKKQGVIAKNAYSLYLNSPD---AATGQIIFGG-VDNAKYSGSLIALPV-TSDRELRISLGSVEVSGKTI 208 (342)
T ss_dssp SCSSCCHHHHHHHTTSSSSSEEEEECCCTT---CSEEEEEETE-EETTSBSSCCEEEEC-CCSSSCEEEEEEEEETTEEE
T ss_pred cccCCcHHHHHHhcCCCCCceEEEEeCCCC---CCCcEEEECc-cCccceeeeeEEeec-CccceEEEEEeEEEECCEEe
Confidence 566666 478999998743 2348899994 444 3457777 44569999999999999988
Q ss_pred ecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccC--CcccceeccCCCccccCCeEEEEE
Q 035660 298 DIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFD--SWTLCYRGTASHDLIGFPAVTFHF 375 (448)
Q Consensus 298 ~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~P~i~~~f 375 (448)
..+ +..+||||||++++||++++++|.+++.+..... .... ..++|+. .|+|+|+|
T Consensus 209 ~~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~---~~~~~~~~~~C~~---------~p~i~f~f 266 (342)
T 3pvk_A 209 NTD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD---SNGNSFYEVDCNL---------SGDVVFNF 266 (342)
T ss_dssp EEE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEEC---TTSCEEEEECSCC---------CSEEEEEE
T ss_pred cCC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeeccc---CCCceEEEEecCC---------CCceEEEE
Confidence 643 3689999999999999999999999997664211 1111 2678975 59999999
Q ss_pred cCCcEEEECCCceEEEeC--CC---eEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 376 AGGAELVLDVDSLFFQRW--PH---SFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 376 ~gg~~~~l~~~~y~~~~~--~~---~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
++|++++||+++|+++.. ++ ..|+..+... +.||||+.|||++|+|||++++|||||+++|+...
T Consensus 267 ~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~-------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~~s 336 (342)
T 3pvk_A 267 SKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVN-------DANILGDNFLRSAYIVYDLDDNEISLAQVKYTSAS 336 (342)
T ss_dssp STTCEEEEEGGGGEEC----------CEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCC
T ss_pred CCCCEEEEcHHHheeeccccCCCcCCeeEEEEeeC-------CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCCCC
Confidence 878999999999998732 22 6799776653 25999999999999999999999999999998654
No 17
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=2.7e-54 Score=426.10 Aligned_cols=298 Identities=23% Similarity=0.381 Sum_probs=241.9
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+.+|+++|.||||||++.|++||||+++||+|.+|.. |. .++.|||++|+|++. .
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~ 67 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACT--SHSRFNPSESSTYST-------------------N 67 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHH--TSCCBCGGGCTTCEE-------------------E
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccC--CCCcCCCccCCCeEE-------------------C
Confidence 566899999999999999999999999999999999986 76 578999999999998 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCc------hhhhh-
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLS------LVSQL- 240 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s------~~~ql- 240 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+. |. ...+||||||+..++ ++.+|
T Consensus 68 ~~~~~i~Yg~gs-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~ 141 (329)
T 1htr_B 68 GQTFSLQYGSGS-LTGFFGYDTLTVQS-----IQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMV 141 (329)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHH
T ss_pred CcEEEEEeCCCC-eEEEEEeeeEEEcc-----eEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHH
Confidence 789999999998 59999999999987 89999999999987652 32 358999999998876 33333
Q ss_pred ------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 241 ------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 241 ------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
.++||+||.+.... ..|.|+||+ .|.. +.|+|+ ..+.+|.|.|++|+|+++.+... .
T Consensus 142 ~qg~i~~~~Fs~~L~~~~~~--~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~--------~ 209 (329)
T 1htr_B 142 QEGALTSPVFSVYLSNQQGS--SGGAVVFGG-VDSSLYTGQIYWAPV-TQELYWQIGIEEFLIGGQASGWC--------S 209 (329)
T ss_dssp HTTCSSSSEEEEEECSSCSS--EEEEEEESS-CCGGGEEEEEEEEEB-CSSSSCEEEECEEEETTEECCTT--------T
T ss_pred hcCCCCCCEEEEEEcCCCCC--CCcEEEEcc-cCHHHcCCceEEEEC-CCCceEEEEEeEEEECCceeeec--------C
Confidence 57999999985332 258899995 5443 457777 45789999999999999875311 1
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLF 389 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~ 389 (448)
....+||||||++++||+++|++|.+++.+... ......++|+. ...+|+|+|+|+ |++++||+++|+
T Consensus 210 ~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~-----~~g~~~~~C~~------~~~~P~i~f~f~-g~~~~i~~~~y~ 277 (329)
T 1htr_B 210 EGCQAIVDTGTSLLTVPQQYMSALLQATGAQED-----EYGQFLVNCNS------IQNLPSLTFIIN-GVEFPLPPSSYI 277 (329)
T ss_dssp TCEEEEECTTCCSEEEEGGGHHHHHHHHTCEEC-----TTSCEEECGGG------GGGSCCEEEEET-TEEEEECHHHHE
T ss_pred CCceEEEecCCccEECCHHHHHHHHHHhCCeec-----CCCeEEEeCCC------cccCCcEEEEEC-CEEEEECHHHhc
Confidence 256899999999999999999999999865431 11122578987 357999999997 899999999999
Q ss_pred EEeCCCeEEEEEEecCCCCCCCCC-ceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 390 FQRWPHSFCMAVLPSFVNGENYTS-LSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~~~-~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
++.. + .|+..+...+.+...++ .||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~~-g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 278 LSNN-G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EECS-S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ccCC-C-EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 9876 4 89954433221111124 69999999999999999999999999874
No 18
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.6e-54 Score=426.16 Aligned_cols=293 Identities=19% Similarity=0.296 Sum_probs=240.6
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCc
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQC 171 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~ 171 (448)
..+.+|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+|++. .+|
T Consensus 8 ~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~-------------------~~~ 68 (320)
T 4aa9_A 8 YLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRN-------------------LGK 68 (320)
T ss_dssp CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEE-------------------EEE
T ss_pred ccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEc-------------------CCc
Confidence 3467899999999999999999999999999999999863323679999999999998 478
Q ss_pred eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCc------hhhhh---
Q 035660 172 LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLS------LVSQL--- 240 (448)
Q Consensus 172 ~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s------~~~ql--- 240 (448)
.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+ .|. ...+||||||++.++ ++.+|
T Consensus 69 ~~~i~Yg~gs-~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~ 142 (320)
T 4aa9_A 69 PLSIHYGTGS-MEGFLGYDTVTVSN-----IVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDR 142 (320)
T ss_dssp EEEEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHT
T ss_pred EEEEEECCcE-EEEEEEEEEEEECC-----EeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhC
Confidence 9999999998 79999999999998 8999999999998776 232 247999999997654 44444
Q ss_pred ----cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 ----GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 ----~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
.++||+||.+. ...|.|+||+ .|.+ +.|+|+ ..+.+|.|++++|+|+++.+..+ ..
T Consensus 143 g~i~~~~Fs~~l~~~----~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~v~~~~~~~~---------~~ 207 (320)
T 4aa9_A 143 HLVARDLFSVYMDRN----GQGSMLTLGA-IDPSYYTGSLHWVPV-TLQQYWQFTVDSVTINGVAVACV---------GG 207 (320)
T ss_dssp TCSSSSEEEEECCSS----SSCCEEEETC-CCGGGEEEEEEEEEC-SSBTTBEEEECEEEETTEEEEST---------TC
T ss_pred CCCCCceEEEEeCCC----CCCeEEEEcc-cCHHHccCceEEEEc-ccCCceEEEEeEEEECCEEeccC---------CC
Confidence 57899999984 2347899995 5544 356776 46789999999999999887643 15
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEE
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQ 391 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 391 (448)
..+||||||++++||++++++|.+++++... ......++|+. ...+|+|+|+|+ |++++||+++|+.+
T Consensus 208 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~-----~~g~~~~~C~~------~~~~p~i~f~f~-g~~~~l~~~~y~~~ 275 (320)
T 4aa9_A 208 CQAILDTGTSVLFGPSSDILKIQMAIGATEN-----RYGEFDVNCGN------LRSMPTVVFEIN-GRDYPLSPSAYTSK 275 (320)
T ss_dssp EEEEECTTCSSEEEEHHHHHHHHHHTTCEEC-----TTSCEEECGGG------GGGCCCEEEEET-TEEEEECHHHHEEE
T ss_pred cEEEEECCCCcEECCHHHHHHHHHHhCCccc-----CCCcEEEeCCC------CCcCceEEEEEC-CEEEEECHHHhccC
Confidence 6899999999999999999999999854421 11122679987 357999999998 89999999999977
Q ss_pred eCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 392 RWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
. +..|+..+..... ++.||||++|||++|+|||++++|||||+++
T Consensus 276 ~--~~~C~~~i~~~~~----~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 276 D--QGFCTSGFQGDNN----SELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp E--TTEEEESEEEETT----CCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred C--CCeEEEEEEcCCC----CCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 3 4679964433222 1369999999999999999999999999974
No 19
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=7.3e-54 Score=422.21 Aligned_cols=297 Identities=18% Similarity=0.181 Sum_probs=241.2
Q ss_pred cccccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 035660 88 VFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNF 167 (448)
Q Consensus 88 ~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~ 167 (448)
..+...+.+|+++|.|| ||++.|++||||+++||+|.+|..|..+.++.|||++|+ ++.
T Consensus 7 ~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~------------------ 65 (325)
T 1ibq_A 7 TTPQNNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKL------------------ 65 (325)
T ss_dssp EEECTTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EEC------------------
T ss_pred eEEcCCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-Ccc------------------
Confidence 33455778999999999 999999999999999999999998776788999999998 543
Q ss_pred CCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCc---------h
Q 035660 168 LNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLS---------L 236 (448)
Q Consensus 168 ~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s---------~ 236 (448)
.+|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||+..++ +
T Consensus 66 -~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~ 139 (325)
T 1ibq_A 66 -SGYSWDISYGDGSSASGDVYRDTVTVGG-----VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTF 139 (325)
T ss_dssp -TTCBEEEECSSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCH
T ss_pred -CCCEEEEEeCCCCEEEEEEEEeEEEECC-----EEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCH
Confidence 4789999999998889999999999997 8999999999998765332 258999999997655 3
Q ss_pred hhhh-----cCceeEeccCCCCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCcccccc
Q 035660 237 VSQL-----GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRK 307 (448)
Q Consensus 237 ~~ql-----~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~ 307 (448)
++|| .++||+||.+. ..|.|+||+.+. ..+.|+|+.....+|.|+|++|+|+++.+..
T Consensus 140 ~~~l~~~i~~~~FS~~l~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~-------- 206 (325)
T 1ibq_A 140 FDTVKSQLDSPLFAVQLKHD-----APGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSS-------- 206 (325)
T ss_dssp HHHHGGGSSSSEEEEEEETT-----EEEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCBS--------
T ss_pred HHHHHHhcCCcEEEEEecCC-----CCceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeeccC--------
Confidence 3454 68999999872 358899995432 3456888854678999999999999986531
Q ss_pred ccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCc
Q 035660 308 TWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDS 387 (448)
Q Consensus 308 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 387 (448)
....+||||||++++||+++|++|.+++.++. +........++|+. .+|+|+|+|+ |++++||+++
T Consensus 207 --~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~---~~~~~g~~~~~C~~--------~~P~i~f~fg-g~~~~i~~~~ 272 (325)
T 1ibq_A 207 --SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ---ESYEAGGYVFSCST--------DLPDFTVVIG-DYKAVVPGKY 272 (325)
T ss_dssp --CCEEEEECTTCCSEEECHHHHHHHHTTSTTCB---CCSSSSSCEEETTC--------CCCCEEEEET-TEEEEECHHH
T ss_pred --CCceEEEeCCCCcEeCCHHHHHHHHHhCCCce---EcCcCCeEEEEcCC--------CCCcEEEEEC-CEEEEECHHH
Confidence 15689999999999999999999999985432 11111122568984 5899999996 9999999999
Q ss_pred eEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 388 LFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 388 y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
|++...+ ...|++.+...+. .+.||||++|||++|+|||++++|||||++.
T Consensus 273 ~~~~~~~~~~~~C~~~i~~~~~----~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 273 INYAPVSTGSSTCYGGIQSNSG----LGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp HEEEESSTTCSEEEESEEECTT----TCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred hcccccCCCCCeEEEEEEcCCC----CCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 9987643 3789985544322 1469999999999999999999999999864
No 20
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=5.7e-53 Score=424.66 Aligned_cols=319 Identities=22% Similarity=0.399 Sum_probs=243.3
Q ss_pred ccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCC---CCCCCCC
Q 035660 91 SKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYS---PNVKCNF 167 (448)
Q Consensus 91 ~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~---~~~~C~~ 167 (448)
...+.+|+++|.|||| |+|||||+++||+|.+|. +++.++|.++.|... ....|..
T Consensus 10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~----------------~~~~~~C~s~~C~~~~~~~~~sc~~ 68 (381)
T 1t6e_X 10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ----------------PPAEIPCSSPTCLLANAYPAPGCPA 68 (381)
T ss_dssp CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC----------------CCCCCBTTSHHHHHHHSSCCTTCCC
T ss_pred cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC----------------CCCccCCCCchhccccCCCCCCCCC
Confidence 4566899999999998 999999999999988651 255677887777642 1235542
Q ss_pred --------CCCc-eeeeeeCCCCceeceeEEEEEEEecCCCCceeeccE----EEEeEEcC--CCCcCCCcceeeecCCC
Q 035660 168 --------LNQC-LYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDV----VFGCGHDN--GKFEDRHLSGVFGLGFS 232 (448)
Q Consensus 168 --------~~~~-~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~----~fg~~~~~--~~~~~~~~~GilGLg~~ 232 (448)
+..| .|.+.|++|+.+.|.+++|+|+|++.++ ...++++ .|||++.. .+.+ ...+||||||++
T Consensus 69 ~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g-~~~v~~~~~~~~Fg~~~~~~~~~~~-~~~dGIlGLg~~ 146 (381)
T 1t6e_X 69 PSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDG-SKPVSKVNVGVLAACAPSKLLASLP-RGSTGVAGLANS 146 (381)
T ss_dssp CCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESS-SSEEEEEEEEEEEEECCGGGGTTSC-TTEEEEEECSSS
T ss_pred ccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCC-CccccceeeeeEeecCcccccCCCC-CCCceEEEeCCC
Confidence 2457 5999999999779999999999986321 1455665 56999876 3332 368999999999
Q ss_pred CCchhhhh------cCceeEeccCCCCCCCcceeEEeCCCCC------CCCcccccccc--CceEEEEEeEEEEcCEEee
Q 035660 233 RLSLVSQL------GSTFSYCVGNLNDPYYFHNKLVLGHGAR------IEGDSTPLEVI--NGRYYITLEAISIGGKMLD 298 (448)
Q Consensus 233 ~~s~~~ql------~~~FS~~L~~~~~~~~~~g~l~fG~~~~------~~~~~~pl~~~--~~~y~v~l~~i~vg~~~~~ 298 (448)
.+++++|| +++||+||.+. ..|.|+||+.+. ..+.|+||... ..+|+|+|++|+||++.+.
T Consensus 147 ~~s~~~ql~~~~~~~~~FS~~L~~~-----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~ 221 (381)
T 1t6e_X 147 GLALPAQVASAQKVANRFLLCLPTG-----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVP 221 (381)
T ss_dssp TTSHHHHHHHHHTCCSEEEEECCSS-----SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECC
T ss_pred cchhHHHHhhhcccCceEEEEeCCC-----CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEec
Confidence 99999998 47999999874 348899996432 25679999432 3467799999999999988
Q ss_pred cCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhh------ccccc-c-cCCcccceeccCCC---cccc
Q 035660 299 IDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDM------WLTRY-R-FDSWTLCYRGTASH---DLIG 367 (448)
Q Consensus 299 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~------~~~~~-~-~~~~~~C~~~~~~~---~~~~ 367 (448)
++...|. ++++||||||++++||+++|++|.+++.+.+.. .+++. . ...+++|+...... ....
T Consensus 222 ~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 296 (381)
T 1t6e_X 222 VPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296 (381)
T ss_dssp CCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEEC
T ss_pred CCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCc
Confidence 7766553 468999999999999999999999999987741 22232 1 12368999743211 0136
Q ss_pred CCeEEEEEcCCcEEEECCCceEEEeCCCeEEEEEEecCCC--CCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 368 FPAVTFHFAGGAELVLDVDSLFFQRWPHSFCMAVLPSFVN--GENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 368 ~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~C~~~~~~~~~--~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+|+|+|+||++|+||+++|+++..++..|++++..... +....+.||||+.|||++|+|||++++|||||++.
T Consensus 297 ~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp CCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 8999999986799999999999987667889988765431 00012469999999999999999999999999854
No 21
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=7.1e-54 Score=421.85 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=238.3
Q ss_pred cccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 90 PSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 90 ~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
+...+.+|+++|.|| ||++.|++||||+++||+|.+|..|..+.++.|||++|+ ++. .
T Consensus 10 ~~~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~-------------------~ 67 (323)
T 1izd_A 10 PTSNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKI-------------------D 67 (323)
T ss_dssp ECGGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEE-------------------E
T ss_pred EcCCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-Ccc-------------------C
Confidence 345678999999999 899999999999999999999998766678999999999 553 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCch---------hh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLSL---------VS 238 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s~---------~~ 238 (448)
+|.|.+.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||++.++. ++
T Consensus 68 ~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~ 142 (323)
T 1izd_A 68 GATWSISYGDGSSASGDVYKDKVTVGG-----VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFD 142 (323)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHH
T ss_pred CCeEEEEcCCCCeEEEEEEEEEEEECC-----EEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHH
Confidence 799999999999789999999999997 8999999999998765332 2579999999986653 33
Q ss_pred h----h-cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccc
Q 035660 239 Q----L-GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKT 308 (448)
Q Consensus 239 q----l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 308 (448)
+ + +++||+||.+. ..|.|+||+ .|.. +.|+|+...+.+|.|++++|+||+ .+. .
T Consensus 143 ~l~~~i~~~~FS~~L~~~-----~~G~l~fGg-~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~--~------- 206 (323)
T 1izd_A 143 NVKSSLSEPIFAVALKHN-----APGVYDFGY-TDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DSS--S------- 206 (323)
T ss_dssp HHGGGSSSSEEEEECCTT-----SCEEEEESS-CCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EEE--C-------
T ss_pred HHHHhccCcEEEEEccCC-----CCCEEEECC-cCccccccceEEEECCCCCceEEEEECeEEECC-ccc--C-------
Confidence 3 4 58999999862 248899995 5544 357777546789999999999999 543 1
Q ss_pred cCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCce
Q 035660 309 WDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSL 388 (448)
Q Consensus 309 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y 388 (448)
....+||||||++++||++++++|.+++.++. +........++|+. .+|+|+|+|+ |++++||+++|
T Consensus 207 -~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~---~~~~~g~~~~~C~~--------~~P~i~f~fg-g~~~~i~~~~~ 273 (323)
T 1izd_A 207 -DSITGIADTGTTLLLLDDSIVDAYYEQVNGAS---YDSSQGGYVFPSSA--------SLPDFSVTIG-DYTATVPGEYI 273 (323)
T ss_dssp -CCEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTTEEEEETTC--------CCCCEEEEET-TEEEEECHHHH
T ss_pred -CCceEEEeCCCcceeCCHHHHHHHHHhCCCcE---EcCcCCEEEEECCC--------CCceEEEEEC-CEEEecCHHHe
Confidence 15689999999999999999999999885432 11111112568974 5899999996 99999999999
Q ss_pred EEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 389 FFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
++...++..|++.+...+. .+.||||++|||++|+|||++++|||||++.
T Consensus 274 ~~~~~~~~~C~~~i~~~~~----~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 274 SFADVGNGQTFGGIQSNSG----IGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEEECSTTEEEESEEECTT----TSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCCeEEEEEEcCCC----CCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 9887556789985443322 1469999999999999999999999999863
No 22
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=1.2e-53 Score=423.47 Aligned_cols=299 Identities=21% Similarity=0.354 Sum_probs=242.3
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC----CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL----DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNF 167 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~----~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~ 167 (448)
..+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+|++.
T Consensus 15 ~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~------------------ 74 (341)
T 3k1w_A 15 YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV--YHKLFDASDSSSYKH------------------ 74 (341)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHH--TSCCBCGGGCTTCEE------------------
T ss_pred ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCccc--CCCCCCCCcCcCeeE------------------
Confidence 34689999999999999999999999999999999998 475 678999999999998
Q ss_pred CCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-cC-CCcceeeecCCCCCc------hhhh
Q 035660 168 LNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-ED-RHLSGVFGLGFSRLS------LVSQ 239 (448)
Q Consensus 168 ~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~~-~~~~GilGLg~~~~s------~~~q 239 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++ +.+ ++.|||++...+. |. ...+||||||++.++ ++.+
T Consensus 75 -~~~~~~i~Yg~gs-~~G~~~~D~v~ig~-----~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 146 (341)
T 3k1w_A 75 -NGTELTLRYSTGT-VSGFLSQDIITVGG-----ITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDN 146 (341)
T ss_dssp -EEEEEEEEETTEE-EEEEEEEEEEEETT-----EEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHH
T ss_pred -CCCEEEEEECCcE-EEEEEEEEEEEECC-----cee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHH
Confidence 5799999999998 89999999999998 788 9999999987753 32 347999999998775 3444
Q ss_pred h-------cCceeEeccCCCCCC-CcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 240 L-------GSTFSYCVGNLNDPY-YFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 240 l-------~~~FS~~L~~~~~~~-~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
| .++||+||.+..... ...|.|+||+ .|.. +.|+|+ ..+.+|.|.+++|+|+++.+..+
T Consensus 147 l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~v~~~~~~~~------ 218 (341)
T 3k1w_A 147 IISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG-SDPQHYEGNFHYINL-IKTGVWQIQMKGVSVGSSTLLCE------ 218 (341)
T ss_dssp HHHHTCBSSSEEEEEECCCC-----CCEEEEESS-CCGGGEEEEEEEEEC-SSTTSCEEEECCEEETTEEEECT------
T ss_pred HHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECc-cChHHccCceEEEec-CCCCEEEEEEeEEEECCEEeecC------
Confidence 3 579999999854211 2358899995 5544 356777 46789999999999999875432
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
....+||||||++++||++++++|.+++.+... . .. ..++|.. ...+|+|+|+|+ |++++||++
T Consensus 219 ---~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~-~g-~~~~C~~------~~~~p~i~f~f~-g~~~~l~~~ 282 (341)
T 3k1w_A 219 ---DGCLALVDTGASYISGSTSSIEKLMEALGAKKR----L-FD-YVVKCNE------GPTLPDISFHLG-GKEYTLTSA 282 (341)
T ss_dssp ---TCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----S-SC-EEEEGGG------GGGCCCEEEEET-TEEEEECHH
T ss_pred ---CCCEEEEECCCChhcCCHHHHHHHHHHcCCeec----C-CC-eEEeCCC------CCcCCcEEEEEC-CEEEEECHH
Confidence 146899999999999999999999999865431 1 11 4578986 357999999998 899999999
Q ss_pred ceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++..+ +..|+..+...+......+.||||++|||++|+|||++++|||||+++
T Consensus 283 ~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 283 DYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp HHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 99988643 578996544422111112479999999999999999999999999975
No 23
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.1e-53 Score=435.69 Aligned_cols=289 Identities=19% Similarity=0.322 Sum_probs=236.8
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+.+|+++|.||||||++.|++||||+++||+|.+|.. |. .++.|||++|+|++. .
T Consensus 135 ~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~--~~~~ydps~SsT~~~-------------------~ 193 (453)
T 2bju_A 135 FQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCL--TKHLYDSSKSRTYEK-------------------D 193 (453)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGG--GSCCBCGGGCTTCEE-------------------E
T ss_pred cCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccC--CCCcCCCccCCceeE-------------------C
Confidence 356899999999999999999999999999999999984 65 679999999999998 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCC--CC-cC-CCcceeeecCCCCCch------hhh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNG--KF-ED-RHLSGVFGLGFSRLSL------VSQ 239 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~--~~-~~-~~~~GilGLg~~~~s~------~~q 239 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.++ +.|||++... +. |. ...+||||||++.++. +.+
T Consensus 194 ~~~~~i~YgdGs-~~G~~~~Dtv~ig~-----~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~ 266 (453)
T 2bju_A 194 GTKVEMNYVSGT-VSGFFSKDLVTVGN-----LSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVE 266 (453)
T ss_dssp EEEEEEECSSSE-EEEEEEEEEEEETT-----EEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHH
T ss_pred CcEEEEEcCCCC-eEEEEEEEEEEEeC-----cEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHH
Confidence 799999999999 89999999999997 8899 9999999876 42 31 3489999999987653 333
Q ss_pred h-------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcccccc
Q 035660 240 L-------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRK 307 (448)
Q Consensus 240 l-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~ 307 (448)
| .++||+||.+.. ...|.|+||+ .|.. +.|+|+ ..+.+|.|.++ |+||+ .+ +
T Consensus 267 L~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg-~D~~~y~G~l~~~pv-~~~~~w~V~l~-I~Vgg-~~-~-------- 330 (453)
T 2bju_A 267 LKNQNKIENALFTFYLPVHD---KHTGFLTIGG-IEERFYEGPLTYEKL-NHDLYWQITLD-AHVGN-IM-L-------- 330 (453)
T ss_dssp HHHTTSSSSCEEEEECCBTT---TBCEEEEESS-CCGGGEEEEEEEEEE-EEETTEEEEEE-EEETT-EE-E--------
T ss_pred HHHCCCCCCCEEEEEeCCCC---CCCeEEEECC-CCHHHcCCceEEEec-CCCceEEEEEE-EEECc-EE-e--------
Confidence 3 589999999852 2358899995 5543 457777 45689999999 99999 33 1
Q ss_pred ccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc-CCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 308 TWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF-DSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 308 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
....+||||||++++||+++|++|.+++.+.. .... ...++|+. ..+|+|+|+|+ |++++||++
T Consensus 331 --~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~-----~~~g~~~~v~C~~-------~~~P~itf~fg-g~~~~l~~~ 395 (453)
T 2bju_A 331 --EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK-----VPFLPFYVTLCNN-------SKLPTFEFTSE-NGKYTLEPE 395 (453)
T ss_dssp --EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE-----CTTSSCEEEETTC-------TTCCCEEEECS-SCEEEECHH
T ss_pred --ccccEEEcCCCCeEecCHHHHHHHHHHhCCcc-----cCCCceEEEecCC-------CCCCcEEEEEC-CEEEEECHH
Confidence 15689999999999999999999999885431 1112 22678986 36899999997 899999999
Q ss_pred ceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++..+ +..|+..+...+.+. +.||||++|||++|+|||++++|||||+++
T Consensus 396 ~yi~~~~~~g~~~C~~~~~~~~~~~---~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 396 YYLQHIEDVGPGLCMLNIIGLDFPV---PTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp HHEEECTTTSTTEEEECEEECCCSS---CEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HhEeecccCCCceEEEEEEeCCCCC---CCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 99999763 468996444333211 379999999999999999999999999875
No 24
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=422.63 Aligned_cols=312 Identities=20% Similarity=0.274 Sum_probs=240.5
Q ss_pred cceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcee
Q 035660 94 FSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLY 173 (448)
Q Consensus 94 ~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~ 173 (448)
+..|+++|.||||||++.|+|||||+++||+|.+|..| ++.|||++|+||+. .+|.|
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~----~~~f~~~~SsT~~~-------------------~~~~~ 68 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI----DTYFDTERSSTYRS-------------------KGFDV 68 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTB----SCCCCGGGCTTCEE-------------------EEEEE
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCcc----ccCcccccCcccee-------------------CCceE
Confidence 46799999999999999999999999999999999766 57899999999998 47899
Q ss_pred eeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCc------------hhhh
Q 035660 174 NQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLS------------LVSQ 239 (448)
Q Consensus 174 ~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s------------~~~q 239 (448)
++.|++|+ +.|.+++|+|+|++.. .....+.|+|..+..+.|. ...+||||||++.++ +++|
T Consensus 69 ~i~Yg~Gs-~~G~~~~Dtv~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q 144 (383)
T 2ewy_A 69 TVKYTQGS-WTGFVGEDLVTIPKGF---NTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQ 144 (383)
T ss_dssp EEECSSCE-EEEEEEEEEEEETTTE---EEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHH
T ss_pred EEEECCcE-EEEEEEEEEEEECCCc---cceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHc
Confidence 99999998 6999999999998621 1122467888876665542 247999999998764 3444
Q ss_pred h--cCceeEeccCC----CCCCCcceeEEeCCCCC----CCCccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 240 L--GSTFSYCVGNL----NDPYYFHNKLVLGHGAR----IEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 240 l--~~~FS~~L~~~----~~~~~~~g~l~fG~~~~----~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
. .++||+||.+. .......|.|+||+.+. ..+.|+|+ ....+|.|.|++|+|+++.+.++...|.
T Consensus 145 ~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g~~~~~~~~~~~---- 219 (383)
T 2ewy_A 145 ANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPI-KEEWYYQIEILKLEIGGQSLNLDCREYN---- 219 (383)
T ss_dssp HTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEEC-SSBTTBBCCEEEEEETTEECCCCTTTTT----
T ss_pred cCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEec-CCCceEEEEEEEEEECCEEccccccccC----
Confidence 3 57999999642 11123458899995432 24567787 4467999999999999999877654442
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc----CCcccceeccCCCccccCCeEEEEEcCC-----cE
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF----DSWTLCYRGTASHDLIGFPAVTFHFAGG-----AE 380 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~C~~~~~~~~~~~~P~i~~~f~gg-----~~ 380 (448)
...+||||||++++||+++|++|.+++.+.... ..... ...++|+..... ....+|+|+|+|+|+ .+
T Consensus 220 -~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~--~~~~~~~~~~~~~~C~~~~~~-~~~~~P~i~f~f~g~~~~~~~~ 295 (383)
T 2ewy_A 220 -ADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI--PEFSDGFWTGSQLACWTNSET-PWSYFPKISIYLRDENSSRSFR 295 (383)
T ss_dssp -SSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS--SCCCHHHHHTSEEEEECSSSC-GGGGSCCEEEEEECSSTTEEEE
T ss_pred -CccEEEEcCCccccCCHHHHHHHHHHHhhhccc--ccCccccccccccccccCCcc-cHhhCCcEEEEECCCCCCceEE
Confidence 468999999999999999999999999887531 11111 125789873211 124699999999854 37
Q ss_pred EEECCCceEEEeC---CCeEEEEE-EecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 381 LVLDVDSLFFQRW---PHSFCMAV-LPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 381 ~~l~~~~y~~~~~---~~~~C~~~-~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
|+||+++|+++.. .+..|+++ +...+ +.||||++|||++|+|||++++|||||+++|+..+
T Consensus 296 ~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~------~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~ 360 (383)
T 2ewy_A 296 ITILPQLYIQPMMGAGLNYECYRFGISPST------NALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIA 360 (383)
T ss_dssp EEECHHHHEEEECCCTTCSEEEEESEEEES------SCEEECHHHHTTEEEEEETTTTEEEEEECTTCBSS
T ss_pred EEEChHHheeecccCCCCceeEEEEecCCC------CcEEEChHHhCCeeEEEECCCCeEEEEeccCCCcC
Confidence 9999999998864 25689864 22211 35999999999999999999999999999998643
No 25
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=8e-54 Score=421.58 Aligned_cols=296 Identities=17% Similarity=0.198 Sum_probs=239.0
Q ss_pred ccccccccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 035660 87 DVFPSKVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCN 166 (448)
Q Consensus 87 ~~~~~~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~ 166 (448)
...+...+.+|+++|.|| ||++.|++||||+++||+|.+|..|..+.++.|||++|+ ++.
T Consensus 7 ~~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~----------------- 66 (323)
T 1bxo_A 7 TNTPTANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KEL----------------- 66 (323)
T ss_dssp EEEECGGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEE-----------------
T ss_pred eeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-ccc-----------------
Confidence 333455778999999999 999999999999999999999998776788999999998 654
Q ss_pred CCCCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCch--------
Q 035660 167 FLNQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLSL-------- 236 (448)
Q Consensus 167 ~~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s~-------- 236 (448)
.+|.|++.|++|+.+.|.+++|+|+|++ +.++++.|||++...+.|. ...+||||||++.++.
T Consensus 67 --~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 139 (323)
T 1bxo_A 67 --SGYTWSISYGDGSSASGNVFTDSVTVGG-----VTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTT 139 (323)
T ss_dssp --EEEEEEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCC
T ss_pred --CCCeEEEEeCCCCeEEEEEEEEEEEECC-----EEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCC
Confidence 4799999999999889999999999998 8999999999998765332 2579999999976543
Q ss_pred -hhh----h-cCceeEeccCCCCCCCcceeEEeCCCC----CCCCccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 237 -VSQ----L-GSTFSYCVGNLNDPYYFHNKLVLGHGA----RIEGDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 237 -~~q----l-~~~FS~~L~~~~~~~~~~g~l~fG~~~----~~~~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
+++ + +++||+||.+. ..|.|+||+.+ ...+.|+|+...+.+|.|+|++|+|++ +..
T Consensus 140 ~~~~l~~~i~~~~FS~~L~~~-----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~--~~~------- 205 (323)
T 1bxo_A 140 FFDTVKSSLAQPLFAVALKHQ-----QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS--QSG------- 205 (323)
T ss_dssp HHHHHGGGBSSSEEEEECCSS-----SCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT--EEE-------
T ss_pred HHHHHHHhcCCcEEEEEEeCC-----CCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC--ccC-------
Confidence 334 3 58999999862 34889999543 234568888546789999999999999 211
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
....+||||||++++||++++++|.+++.++. +........++|+. .+|+|+|+|+ |++++||++
T Consensus 206 ---~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~~--------~~P~i~f~fg-g~~~~l~~~ 270 (323)
T 1bxo_A 206 ---DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ---QDSNAGGYVFDCST--------NLPDFSVSIS-GYTATVPGS 270 (323)
T ss_dssp ---EEEEEEECTTCSSEEECHHHHHHHHTTSTTCE---EETTTTEEEECTTC--------CCCCEEEEET-TEEEEECHH
T ss_pred ---CCceEEEeCCCCceeCCHHHHHHHHHhCCCce---EcCcCCEEEEECCC--------CCceEEEEEC-CEEEEECHH
Confidence 14689999999999999999999999985432 11111112578984 5899999996 899999999
Q ss_pred ceEEEeCC-CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP-HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~-~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|++...+ ...|++.+...+. .+.||||++|||++|+|||++++|||||++.
T Consensus 271 ~~~~~~~~~~~~C~~~i~~~~~----~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 271 LINYGPSGDGSTCLGGIQSNSG----IGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp HHEEEECSSSSCEEESEEECTT----CSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HeEEeccCCCCeEEEEEECCCC----CCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 99988654 3689985544332 1469999999999999999999999999863
No 26
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=1.8e-52 Score=430.49 Aligned_cols=313 Identities=18% Similarity=0.309 Sum_probs=244.2
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCce
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCL 172 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~ 172 (448)
.+..|+++|.||||||++.|+|||||+++||+|.+| |. .++.|||++|+||+. .+|.
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~--~~~~y~~~~SsT~~~-------------------~~~~ 128 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRD-------------------LRKG 128 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEE-------------------EEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--cc--cCCcccCCCCCCccc-------------------CCcc
Confidence 446899999999999999999999999999999988 54 678999999999998 4789
Q ss_pred eeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC--CCcceeeecCCCCCc--------hhhhh--
Q 035660 173 YNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED--RHLSGVFGLGFSRLS--------LVSQL-- 240 (448)
Q Consensus 173 ~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s--------~~~ql-- 240 (448)
|.+.|++|+ +.|.+++|+|+|++.. ...+ .+.|+|+....+.|. ...+||||||+..++ ++.+|
T Consensus 129 ~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~ 204 (455)
T 3lpj_A 129 VYVPYTQGK-WEGELGTDLVSIPHGP--NVTV-RANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVK 204 (455)
T ss_dssp EEEECSSCE-EEEEEEEEEEECTTSC--SCEE-EEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHH
T ss_pred EEEEeCCeE-EEEEEEEEEEEECCCc--ceee-EEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHH
Confidence 999999998 6999999999998521 0222 367899887766543 357999999997654 33444
Q ss_pred ----cCceeEeccCCCCC-------CCcceeEEeCCCCCCCC-----ccccccccCceEEEEEeEEEEcCEEeecCCccc
Q 035660 241 ----GSTFSYCVGNLNDP-------YYFHNKLVLGHGARIEG-----DSTPLEVINGRYYITLEAISIGGKMLDIDPDIF 304 (448)
Q Consensus 241 ----~~~FS~~L~~~~~~-------~~~~g~l~fG~~~~~~~-----~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 304 (448)
.++||+||.+.... ....|.|+||+ .|..+ .|+|+ ....+|.|.+++|+|+++.+.++...+
T Consensus 205 q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~v~g~~~~~~~~~~ 282 (455)
T 3lpj_A 205 QTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGG-IDHSLYTGSLWYTPI-RREWYYEVIIVRVEINGQDLKMDCKEY 282 (455)
T ss_dssp HSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETS-CCGGGEEEEEEEEEC-CSBTTBBCCEEEEEETTEECCCCGGGG
T ss_pred ccCCCceeEEEeccccccccccccccCCCceEEECC-cCcccccCceEEEec-CCCceeEEEEeEEEECCEEcccccccc
Confidence 46999999763111 22358899994 55543 56776 456899999999999999987765443
Q ss_pred cccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccc----cCCcccceeccCCCccccCCeEEEEEcCCc-
Q 035660 305 TRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYR----FDSWTLCYRGTASHDLIGFPAVTFHFAGGA- 379 (448)
Q Consensus 305 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~- 379 (448)
. ...+||||||++++||+++|++|.++|.+.... .... ....++|+...... ...+|+|+|+|+|+.
T Consensus 283 ~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~--~~~~~~~~~g~~~~C~~~~~~~-~~~~P~i~f~f~g~~~ 354 (455)
T 3lpj_A 283 N-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPDGFWLGEQLVCWQAGTTP-WNIFPVISLYLMGEVT 354 (455)
T ss_dssp G-----SSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTT--SCCCHHHHTTCSCEEESTTCCC-GGGSCCEEEEEECSST
T ss_pred C-----CCeEEEECCCcceeCCHHHHHHHHHHhhhhccc--cccCcccccCcceecccccCCc-hhcCCcEEEEEcCCCc
Confidence 2 568999999999999999999999999988631 1111 11258999743111 235999999999543
Q ss_pred ----EEEECCCceEEEeCCC----eEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 380 ----ELVLDVDSLFFQRWPH----SFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 380 ----~~~l~~~~y~~~~~~~----~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
+|+||+++|+++..+. ..|+++...... +.||||++|||++|+|||++++|||||+++|+..+
T Consensus 355 ~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~-----~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~ 425 (455)
T 3lpj_A 355 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSS-----TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHD 425 (455)
T ss_dssp TEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEES-----SCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCC
T ss_pred CceEEEEECHHHheEeccCCCCCCceEEEEeccCCC-----CcEEEChHHhCCeEEEEECCCCEEEEEeccccccc
Confidence 5999999999987642 589974222111 36999999999999999999999999999998765
No 27
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=2e-52 Score=430.57 Aligned_cols=304 Identities=20% Similarity=0.332 Sum_probs=239.4
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC---CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL---DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~---~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
.+.+|+++|.||||||+|.|+|||||+++||+|..|. .|. .++.|||++|+||+. .
T Consensus 50 ~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~--~~~~y~~~~SsT~~~-------------------~ 108 (478)
T 1qdm_A 50 MNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY--LHSRYKAGASSTYKK-------------------N 108 (478)
T ss_dssp GGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGG--GSCCBCGGGCTTCBC-------------------C
T ss_pred cCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCcccc--CCCCCCcccCCCeee-------------------C
Confidence 5688999999999999999999999999999999996 487 568999999999987 5
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCC-c-CCCcceeeecCCCCCch----------h
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKF-E-DRHLSGVFGLGFSRLSL----------V 237 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s~----------~ 237 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+. | ....+||||||++.++. +
T Consensus 109 ~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-----~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~ 182 (478)
T 1qdm_A 109 GKPAAIQYGTGS-IAGYFSEDSVTVGD-----LVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMI 182 (478)
T ss_dssp CCEEEEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHT
T ss_pred CcEEEEEcCCCC-eEEEEEEEEEEECC-----eEECCEEEEEEEecCCcccccccccceecccccccccCCCCcHHHHHH
Confidence 789999999998 89999999999988 89999999999986652 3 23479999999988763 2
Q ss_pred hh--h-cCceeEeccCCCCCCCcceeEEeCCCCCCCC-----ccccccccCceEEEEEeEEEEcCEEeecCCcccccccc
Q 035660 238 SQ--L-GSTFSYCVGNLNDPYYFHNKLVLGHGARIEG-----DSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTW 309 (448)
Q Consensus 238 ~q--l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~~-----~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 309 (448)
+| + .++||+||.+..+. ...|.|+||+ .|..+ .|+|+ ...++|.|.|++|+||++.+.+..
T Consensus 183 ~qg~i~~~~FS~~L~~~~~~-~~~G~l~fGg-~d~~~~~G~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~-------- 251 (478)
T 1qdm_A 183 EQGLVSDPVFSFWLNRHVDE-GEGGEIIFGG-MDPKHYVGEHTYVPV-TQKGYWQFDMGDVLVGGKSTGFCA-------- 251 (478)
T ss_dssp TTTCCSSSEEEEECCCC------CEEEEETC-CCTTSEEEEEEEEEE-EEETTEEEEECCEEETTEECSTTT--------
T ss_pred HCCCCCCCEEEEEeecCCCC-CCCeEEEeCC-cCHhhcCCCceEEec-cCCCeEEEEEeEEEECCEEEeecC--------
Confidence 33 2 57999999885321 2358899995 55544 56777 456899999999999998875432
Q ss_pred CCCceEEeccCccccccHHHHHHHHHHHHHHh----------------------hh------------------------
Q 035660 310 DNGGVIIDSGSSATWLVKAGYDALLHEVESLL----------------------DM------------------------ 343 (448)
Q Consensus 310 ~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~----------------------~~------------------------ 343 (448)
++..+||||||++++||+++|++|.++|.+.. ..
T Consensus 252 ~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~~~~ 331 (478)
T 1qdm_A 252 GGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAG 331 (478)
T ss_dssp TCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC-----------
T ss_pred CCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCcccccccc
Confidence 25789999999999999999999999885421 00
Q ss_pred --------------------------------------------------c---ccccccCCcccceeccCCCccccCCe
Q 035660 344 --------------------------------------------------W---LTRYRFDSWTLCYRGTASHDLIGFPA 370 (448)
Q Consensus 344 --------------------------------------------------~---~~~~~~~~~~~C~~~~~~~~~~~~P~ 370 (448)
. ++.......++|.. ...+|+
T Consensus 332 ~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~------~~~lP~ 405 (478)
T 1qdm_A 332 IRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGS------LGSMPD 405 (478)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGG------GTTCCC
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccc------cccccc
Confidence 0 00000111455654 357999
Q ss_pred EEEEEcCCcEEEECCCceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecC
Q 035660 371 VTFHFAGGAELVLDVDSLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 371 i~~~f~gg~~~~l~~~~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
|+|+|+ |++|+|+|++|++...+ ...|++.+...+.+...++.||||++|||++|+|||++++|||||++
T Consensus 406 i~f~~g-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a 477 (478)
T 1qdm_A 406 IEFTIG-GKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 477 (478)
T ss_dssp EEEEET-TEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEC-CEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeC
Confidence 999997 89999999999998765 35799755433321111257999999999999999999999999986
No 28
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=3.5e-52 Score=421.06 Aligned_cols=311 Identities=19% Similarity=0.311 Sum_probs=240.8
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCce
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCL 172 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~ 172 (448)
.+..|+++|.||||||++.|+|||||+++||+|.+|..| ++.|||++|+||+. .+|.
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~----~~~y~~~~SsT~~~-------------------~~~~ 75 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFL----HRYYQRQLSSTYRD-------------------LRKG 75 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTC----SCCCCGGGCTTCEE-------------------EEEE
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccc----cCCcCcccCCCcee-------------------CCce
Confidence 356899999999999999999999999999999998665 57899999999998 4789
Q ss_pred eeeeeCCCCceeceeEEEEEEEecCCCCceeec-cEEEEeEEcCCCCcC--CCcceeeecCCCCCc------------hh
Q 035660 173 YNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQ-DVVFGCGHDNGKFED--RHLSGVFGLGFSRLS------------LV 237 (448)
Q Consensus 173 ~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~-~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s------------~~ 237 (448)
|++.|++|+ +.|.+++|+|+|++. ..++ .+.|++.....+.|. ...+||||||+..++ ++
T Consensus 76 ~~i~Yg~Gs-~~G~~~~Dtv~ig~g----~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~ 150 (395)
T 2qp8_A 76 VYVPYTQGK-WEGELGTDLVSIPHG----PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV 150 (395)
T ss_dssp EEEECSSCE-EEEEEEEEEEECTTS----CSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHH
T ss_pred EEEEECCcE-EEEEEEeEEEEECCC----CCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHH
Confidence 999999998 599999999999831 2222 367888876655552 357999999997753 33
Q ss_pred hhh--cCceeEeccCCCCC-------CCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCcc
Q 035660 238 SQL--GSTFSYCVGNLNDP-------YYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDI 303 (448)
Q Consensus 238 ~ql--~~~FS~~L~~~~~~-------~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~ 303 (448)
+|. .++||+||.+..-. ....|.|+||+ .|.. +.|+|+ ..+.+|.|.|++|+|+++.+.++...
T Consensus 151 ~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~g~~~~~~~~~ 228 (395)
T 2qp8_A 151 KQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGG-IDHSLYTGSLWYTPI-RREWYYEVIIVRVEINGQDLKMDCKE 228 (395)
T ss_dssp HHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETS-CCGGGEEEEEEEEEC-CSBTTBBCCEEEEEETTEECCCCGGG
T ss_pred HccCCcceEEEEeccccccccccccccCCCcEEEECC-cCcccccCceEEecc-CCCceEEEEEEEEEECCEEcccCccc
Confidence 342 57999999763100 12358899995 5443 457777 44689999999999999998766544
Q ss_pred ccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccc----cCCcccceeccCCCccccCCeEEEEEcCCc
Q 035660 304 FTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYR----FDSWTLCYRGTASHDLIGFPAVTFHFAGGA 379 (448)
Q Consensus 304 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~ 379 (448)
|. ...+||||||++++||+++|++|.+++.+.... .... ....++|+..... ....+|+|+|+|+|+.
T Consensus 229 ~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~--~~~~~~~~~~~~~~C~~~~~~-~~~~~P~i~f~f~g~~ 300 (395)
T 2qp8_A 229 YN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPDGFWLGEQLVCWQAGTT-PWNIFPVISLYLMGEV 300 (395)
T ss_dssp GG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT--SCCCHHHHTTCSCEEESTTCC-CGGGSCCEEEEEECSS
T ss_pred cC-----CceEEEEcCCCcEecCHHHHHHHHHHHhhhccc--ccCCccccccccccccccccc-hHhhCCcEEEEEccCC
Confidence 42 468999999999999999999999999887532 1111 1114789873311 1246999999998553
Q ss_pred -----EEEECCCceEEEeCC----CeEEEEE-EecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 380 -----ELVLDVDSLFFQRWP----HSFCMAV-LPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 380 -----~~~l~~~~y~~~~~~----~~~C~~~-~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
+|+|+|++|+++..+ ...|+++ +...+ +.||||++|||++|+|||++++|||||+++|++++
T Consensus 301 ~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~------~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~ 372 (395)
T 2qp8_A 301 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSS------TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHD 372 (395)
T ss_dssp TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEES------SCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCC
T ss_pred CCceEEEEECHHHhEeecccCCCCCceEEEEEecCCC------CcEEEChHHhCCeeEEEECCCCEEEEEeccCCCCC
Confidence 799999999998653 3489742 22211 35999999999999999999999999999999754
No 29
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=4e-52 Score=421.66 Aligned_cols=314 Identities=18% Similarity=0.280 Sum_probs=240.9
Q ss_pred cceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcee
Q 035660 94 FSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCLY 173 (448)
Q Consensus 94 ~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~~ 173 (448)
+..|+++|.||||||++.|+|||||+++||+|.+| |. .++.|||++|+|++. .+|.|
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~--~~~~y~~~~SsT~~~-------------------~~~~~ 83 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PF--LHRYYQRQLSSTYRD-------------------LRKGV 83 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TT--CSCCCCGGGCTTCEE-------------------EEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Cc--ccCCcCcccCccccc-------------------CCCEE
Confidence 46899999999999999999999999999999988 43 578999999999998 47899
Q ss_pred eeeeCCCCceeceeEEEEEEEecCCCCceeec-cEEEEeEEcCCCCcC--CCcceeeecCCCCCc--------hhhhh--
Q 035660 174 NQTYIRGPSASGVLATEQLIFKTSDEGKIRVQ-DVVFGCGHDNGKFED--RHLSGVFGLGFSRLS--------LVSQL-- 240 (448)
Q Consensus 174 ~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~-~~~fg~~~~~~~~~~--~~~~GilGLg~~~~s--------~~~ql-- 240 (448)
.+.|++|+ +.|.+++|+|+|++. ..+. .+.|+|+....+.|. ...+||||||+..++ ++.+|
T Consensus 84 ~i~Yg~Gs-~~G~~~~D~v~ig~~----~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~ 158 (402)
T 3vf3_A 84 YVPYTQGK-WEGELGTDLVSIPHG----PNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVK 158 (402)
T ss_dssp EEECSSCE-EEEEEEEEEEECTTS----CSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHH
T ss_pred EEEECcEE-EEEEEEEEEEEECCc----cccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHH
Confidence 99999998 699999999999852 2222 345888877665442 347999999997654 34444
Q ss_pred ----cCceeEeccCCCC-------CCCcceeEEeCCCCCCCC-----ccccccccCceEEEEEeEEEEcCEEeecCCccc
Q 035660 241 ----GSTFSYCVGNLND-------PYYFHNKLVLGHGARIEG-----DSTPLEVINGRYYITLEAISIGGKMLDIDPDIF 304 (448)
Q Consensus 241 ----~~~FS~~L~~~~~-------~~~~~g~l~fG~~~~~~~-----~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 304 (448)
.++||+||.+... .....|.|+||+ .|..+ .|+|+ ..+.+|.|.+++|+|+++.+.++...+
T Consensus 159 q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~v~g~~~~~~~~~~ 236 (402)
T 3vf3_A 159 QTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGG-IDHSLYTGSLWYTPI-RREWYYEVIIVRVEINGQDLKMDCKEY 236 (402)
T ss_dssp HSCCCSCEEEEECCCC-------------EEEEESS-CCGGGEEEEEEEEEC-SSBTTBEECEEEEEETTEECCCCGGGG
T ss_pred ccCCccceEEEeecccccccccccccCCCCEEEeCC-cCcccccCceEEEeC-CcCcEEEEEEeEEEECCEEeccccccc
Confidence 4799999975310 023458899995 55544 46776 456899999999999999987765443
Q ss_pred cccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhc-cccc-ccCCcccceeccCCCccccCCeEEEEEcCCc---
Q 035660 305 TRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMW-LTRY-RFDSWTLCYRGTASHDLIGFPAVTFHFAGGA--- 379 (448)
Q Consensus 305 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~--- 379 (448)
. ...+||||||++++||+++|++|.+++.+..... +... .....++|+...... ...+|+|+|+|+++.
T Consensus 237 ~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~P~i~f~f~g~~~~~ 310 (402)
T 3vf3_A 237 N-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTP-WNIFPVISLYLMGEVTNQ 310 (402)
T ss_dssp G-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCC-GGGSCCEEEEEECSSTTE
T ss_pred C-----CCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccch-HhhCCceEEEEecCCCCc
Confidence 2 5689999999999999999999999999885311 0110 011258999743111 236999999999543
Q ss_pred --EEEECCCceEEEeCCC----eEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCCC
Q 035660 380 --ELVLDVDSLFFQRWPH----SFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLDD 448 (448)
Q Consensus 380 --~~~l~~~~y~~~~~~~----~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~~ 448 (448)
+++||+++|+++..+. ..|+++...... +.||||++|||++|+|||++++|||||+++|++.++
T Consensus 311 ~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~-----~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~ 380 (402)
T 3vf3_A 311 SFRITILPQQYLRPVEDVATSQDDCYKFAISQSS-----TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDE 380 (402)
T ss_dssp EEEEEECHHHHEEECCCGGGTTEEEEEECEEEES-----SCEEECHHHHTTEEEEEEGGGTEEEEEEETTCCBCS
T ss_pred eEEEEECHHHheehhccCCCCCceEEEEeccCCC-----CcEEEChHHhCCeEEEEECCCCEEEEEecccCcccC
Confidence 5999999999986542 489963221111 359999999999999999999999999999997653
No 30
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=6e-53 Score=423.07 Aligned_cols=288 Identities=20% Similarity=0.337 Sum_probs=237.9
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCC--CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLD--CSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~--C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+..|+++|.||||||++.|++||||+++||+|.+|.. |. .++.|||++|+|++. .
T Consensus 59 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~--~~~~y~~~~SsT~~~-------------------~ 117 (375)
T 1miq_A 59 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCS--IKNLYDSSKSKSYEK-------------------D 117 (375)
T ss_dssp TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGG--GSCCBCGGGCTTCEE-------------------E
T ss_pred CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCccccc--CCCcCCCccCCceEE-------------------C
Confidence 356899999999999999999999999999999999974 75 578999999999998 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEc----CCCCc-CCCcceeeecCCCCCch------hh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHD----NGKFE-DRHLSGVFGLGFSRLSL------VS 238 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~----~~~~~-~~~~~GilGLg~~~~s~------~~ 238 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.+++ .|||++. .. .| ....+||||||++.++. +.
T Consensus 118 ~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-----~~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~s~~~~~~~~~ 189 (375)
T 1miq_A 118 GTKVDITYGSGT-VKGFFSKDLVTLGH-----LSMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDLSIGSIDPIVV 189 (375)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEETT-----EEEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCTTCSSCCCHHH
T ss_pred CcEEEEEeCCCe-EEEEEEEEEEEEcC-----ceECc-EEEEEEecccccc-ccccCCCceEEeCCCCcccccCCCCHHH
Confidence 789999999998 89999999999997 88999 9999998 44 33 23589999999987763 33
Q ss_pred hh-------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 239 QL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 239 ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
+| .++||+||.+... ..|.|+||+ .|.+ +.|+|+ ..+.+|.|.++ |+||++.+ .
T Consensus 190 ~l~~qg~i~~~~FS~~L~~~~~---~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~-i~v~g~~~--~------ 255 (375)
T 1miq_A 190 ELKNQNKIDNALFTFYLPVHDV---HAGYLTIGG-IEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTM--E------ 255 (375)
T ss_dssp HHHHTTSSSSSEEEEECCTTCT---TEEEEEESS-CCGGGEEEEEEEEEB-SSSSSSEEEEE-EEETTEEE--E------
T ss_pred HHHhccCcCCCEEEEEecCCCC---CCeEEEEcc-cCHHHcCCceEEEec-CCCceEEEEEE-EEECCEEc--c------
Confidence 33 5899999998532 358899995 5443 457777 45789999999 99999876 1
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
...+||||||++++||+++|++|.+++.+.. ........++|+. ..+|+|+|+|+ |++++||++
T Consensus 256 ----~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~----~~~~g~~~~~C~~-------~~~P~i~f~f~-g~~~~l~~~ 319 (375)
T 1miq_A 256 ----KANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFLPFYVTTCDN-------KEMPTLEFKSA-NNTYTLEPE 319 (375)
T ss_dssp ----EEEEEECTTBSSEEECHHHHHHHHHHHTCEE----CTTSSCEEEETTC-------TTCCCEEEECS-SCEEEECGG
T ss_pred ----cceEEecCCCccEEcCHHHHHHHHHHhCCcc----cCCCCeEEEECCC-------CCCCcEEEEEC-CEEEEECHH
Confidence 4689999999999999999999999986542 2112222678986 36999999997 899999999
Q ss_pred ceEEEeCC--CeEEEE-EEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP--HSFCMA-VLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~--~~~C~~-~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++..+ ...|+. +.... .+ .+.||||++|||++|+|||++++|||||+++
T Consensus 320 ~yi~~~~~~g~~~C~~~~~~~~-~~---~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 320 YYMNPILEVDDTLCMITMLPVD-ID---SNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp GSEEESSSSSCSEEEESEEECC-SS---SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HhEeeccCCCCCeEEEEEEECC-CC---CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 99998753 458994 54433 21 1369999999999999999999999999864
No 31
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=2e-52 Score=412.65 Aligned_cols=291 Identities=15% Similarity=0.217 Sum_probs=238.5
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC--CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL--DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQ 170 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~--~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~ 170 (448)
.+..|+++|.|| ||++.|++||||+++||+|.+|. .|..+.++.|||++| |++. .+
T Consensus 15 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~-------------------~~ 72 (330)
T 1yg9_A 15 INTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYIS-------------------DG 72 (330)
T ss_dssp ECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEE-------------------EE
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEE-------------------CC
Confidence 467899999999 99999999999999999999998 584447799999999 9987 47
Q ss_pred ceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcC-CCcceeeecCCCCCc-------hhhhh--
Q 035660 171 CLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFED-RHLSGVFGLGFSRLS-------LVSQL-- 240 (448)
Q Consensus 171 ~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~GilGLg~~~~s-------~~~ql-- 240 (448)
+.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++.....|. ...+||||||++.++ +++||
T Consensus 73 ~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-----~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~ 146 (330)
T 1yg9_A 73 NVQVKFFDTGS-AVGRGIEDSLTISQ-----LTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVLENFVE 146 (330)
T ss_dssp EEEEEETTTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHH
T ss_pred CEEEEEECCce-EEEEEEEEEEEECC-----EEEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCHHHHHHh
Confidence 89999999998 59999999999997 8999999999998743332 247999999998877 44454
Q ss_pred ----cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccccCC
Q 035660 241 ----GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDN 311 (448)
Q Consensus 241 ----~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 311 (448)
+++||+||.+..+. ...|.|+||+ .|.. +.|+|+ ..+.+|.|+|++|+|+++.+. . .+
T Consensus 147 qg~i~~~FS~~l~~~~~~-~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~w~v~l~~i~v~~~~~~-~---------~~ 213 (330)
T 1yg9_A 147 ENLIAPVFSIHHARFQDG-EHFGEIIFGG-SDWKYVDGEFTYVPL-VGDDSWKFRLDGVKIGDTTVA-P---------AG 213 (330)
T ss_dssp TTSSCSEEEEEEEECTTS-CEEEEEEETS-CCGGGEEEEEEEEEB-SCTTSCCEECSEEEETTEEEE-C---------TT
T ss_pred cCCCCceEEEEEcCCCCC-CCCCEEEECC-cCHHHccCceEEEEC-CCCCEEEEEeCeEEECCEEEc-C---------CC
Confidence 58999999885321 1258899995 5443 457777 467899999999999998764 1 15
Q ss_pred CceEEeccCccccccHHHHHHHHHHHHHHhhhccccccc--CC-cccceeccCCCccccCCeEEEEEcCCcEEEECCCce
Q 035660 312 GGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRF--DS-WTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSL 388 (448)
Q Consensus 312 ~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~--~~-~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y 388 (448)
..+||||||++++||++++++|.+++++... ... .. .++|+. ...+|+|+|+|+ |++++||+++|
T Consensus 214 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~-----~~g~~~~~~~~C~~------~~~~p~i~f~fg-g~~~~l~~~~y 281 (330)
T 1yg9_A 214 TQAIIDTSKAIIVGPKAYVNPINEAIGCVVE-----KTTTRRICKLDCSK------IPSLPDVTFVIN-GRNFNISSQYY 281 (330)
T ss_dssp CEEEECTTCSSEEEEHHHHHHHHHHHTCEEE-----ECSSCEEEEECGGG------GGGSCCEEEEET-TEEEEECHHHH
T ss_pred cEEEEecCCccccCCHHHHHHHHHHhCCccc-----CCCceEEEEEECCC------ccccCcEEEEEC-CEEEEECHHHh
Confidence 7899999999999999999999999865421 111 22 478986 357999999996 99999999999
Q ss_pred EEEeCCCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 389 FFQRWPHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+++. +..|+..+..... .+.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~~--~~~C~~~i~~~~~----~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 282 IQQN--GNLCYSGFQPCGH----SDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EEEE--TTEEEESEEEETT----CSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccC--CCcEEEEEEeCCC----CCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9987 5679965443221 1369999999999999999999999999864
No 32
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.3e-51 Score=420.91 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=238.2
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC--CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL--DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLN 169 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~--~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~ 169 (448)
..+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+|++. .
T Consensus 134 ~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~--~~~~ydps~SsT~~~-------------------~ 192 (451)
T 3qvc_A 134 LANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCE--SKNHYDSSKSKTYEK-------------------D 192 (451)
T ss_dssp GBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGT--TSCCBCGGGCTTCEE-------------------E
T ss_pred cCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccC--CCCCCCCCCCccccc-------------------C
Confidence 35678999999999999999999999999999999996 485 678999999999998 4
Q ss_pred CceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEc----CCCCcC-CCcceeeecCCCCCc------hhh
Q 035660 170 QCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHD----NGKFED-RHLSGVFGLGFSRLS------LVS 238 (448)
Q Consensus 170 ~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~----~~~~~~-~~~~GilGLg~~~~s------~~~ 238 (448)
+|.|.+.|++|+ +.|.+++|+|+|++ +.++ +.|||++. ..+ |. ...+||||||++.++ +++
T Consensus 193 ~~~f~i~YgdGs-~~G~~~~Dtv~igg-----~~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~~s~~~~~~~~~ 264 (451)
T 3qvc_A 193 DTPVKLTSKAGT-ISGIFSKDLVTIGK-----LSVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKDLSIGSIDPYIV 264 (451)
T ss_dssp EEEEEEECSSEE-EEEEEEEEEEEETT-----EEEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBCSSSSCCCCHHH
T ss_pred CCEEEEEECCCE-EEEEEEEEEEEECC-----EEEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCcccccCCCCHHH
Confidence 789999999999 99999999999998 8899 99999998 655 42 347999999998754 445
Q ss_pred hh-------cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccc
Q 035660 239 QL-------GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTR 306 (448)
Q Consensus 239 ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 306 (448)
+| .++||+||.+... ..|.|+||+ .|.+ +.|+|+ ..+.+|.|.++ |+||++ . .
T Consensus 265 ~L~~qg~I~~~~FS~~L~~~~~---~~G~l~fGg-iD~s~y~G~l~~~pv-~~~~~w~v~l~-I~Vgg~-~-~------- 329 (451)
T 3qvc_A 265 ELKTQNKIEQAVYSIYLPPENK---NKGYLTIGG-IEERFFDGPLNYEKL-NHDLMWQVDLD-VHFGNV-S-S------- 329 (451)
T ss_dssp HHHHTTSSSSSEEEEECCTTCT---TEEEEEESS-CCGGGEEEEEEEEEC-SSTTSSEEEEE-EEETTE-E-E-------
T ss_pred HHHHcCCCCCCEEEEEEcCCCC---CCCEEEECC-cchhhcCCceEEEEc-ccCCeeEEEEE-EEECCc-c-C-------
Confidence 54 5799999998632 358899994 5554 456777 46789999999 999998 1 1
Q ss_pred cccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCC
Q 035660 307 KTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVD 386 (448)
Q Consensus 307 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 386 (448)
....+||||||++++||++++++|.+++++... .......++|.. ..+|+|+|+|+ |.+++||++
T Consensus 330 ---~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~----~~~g~y~v~C~~-------~~~P~itf~fg-g~~i~lp~~ 394 (451)
T 3qvc_A 330 ---KKANVILDSATSVITVPTEFFNQFVESASVFKV----PFLSLYVTTCGN-------TKLPTLEYRSP-NKVYTLEPK 394 (451)
T ss_dssp ---EEEEEEECTTBSSEEECHHHHHHHHTTTTCEEC----TTSSCEEEETTC-------TTCCCEEEEET-TEEEEECHH
T ss_pred ---CCceEEEeCCCccccCCHHHHHHHHHHcCCeec----CCCCeEEeeCCc-------CcCCcEEEEEC-CEEEEEcHH
Confidence 156899999999999999999999999865431 111122678971 46899999998 899999999
Q ss_pred ceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCC
Q 035660 387 SLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 387 ~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|+++..+ +..|+..+...+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~yi~~~~~~~~~~C~~~i~~~~~~---~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 395 QYLEPLENIFSALCMLNIVPIDLE---KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp HHEEECTTTSTTEEEECEEECCCS---TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HheeecccCCCCeEEEEEEeCCCC---CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 99998753 56899765554421 1479999999999999999999999999874
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=4.4e-51 Score=404.97 Aligned_cols=293 Identities=15% Similarity=0.225 Sum_probs=230.4
Q ss_pred ccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCce
Q 035660 93 VFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCLDCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFLNQCL 172 (448)
Q Consensus 93 ~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~~~~~ 172 (448)
.+..|+++|.||||||++.|+|||||+++||+|. +.|||++|+++ .+|.
T Consensus 10 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~----------~~y~~s~Ss~~---------------------~~~~ 58 (340)
T 1wkr_A 10 QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD----------KSYVKTSTSSA---------------------TSDK 58 (340)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS----------SCCCCCTTCEE---------------------EEEE
T ss_pred cCcEEEEEEEECCCCcEEEEEEeCCChhheecCC----------CccCCcCCccc---------------------cCce
Confidence 3568999999999999999999999999999864 47999888753 3689
Q ss_pred eeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCCCcCCCcceeeecCCCCCch--------------hh
Q 035660 173 YNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGKFEDRHLSGVFGLGFSRLSL--------------VS 238 (448)
Q Consensus 173 ~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~--------------~~ 238 (448)
|.+.|++|+ +.|.+++|+|+|++ +.++++.|||++...+ |. ..+||||||+..+++ +.
T Consensus 59 ~~i~Yg~Gs-~~G~~~~Dtv~~g~-----~~v~~~~fg~~~~~~~-~~-~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~ 130 (340)
T 1wkr_A 59 VSVTYGSGS-FSGTEYTDTVTLGS-----LTIPKQSIGVASRDSG-FD-GVDGILGVGPVDLTVGTLSPHTSTSIPTVTD 130 (340)
T ss_dssp EEEECSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEES-CT-TCSEEEECSCGGGGTTSEESCTTCCCCCHHH
T ss_pred EEEEECCcE-EEEEEEEEEEEECC-----EEEcceEEEEEEccCC-Cc-CCCcEEECCccccccccccccccccCCCHHH
Confidence 999999998 89999999999988 8999999999998765 43 589999999987654 33
Q ss_pred hh-------cCceeEeccCCCCCCCcceeEEeCCCCC----CCCcccccccc---CceEEEEEeEEEEcC-EEeecCCcc
Q 035660 239 QL-------GSTFSYCVGNLNDPYYFHNKLVLGHGAR----IEGDSTPLEVI---NGRYYITLEAISIGG-KMLDIDPDI 303 (448)
Q Consensus 239 ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~~~----~~~~~~pl~~~---~~~y~v~l~~i~vg~-~~~~~~~~~ 303 (448)
+| +++||+||.+........|.|+||+.+. ..+.|+|+... ..+|.|. ++|+|++ +.+..
T Consensus 131 ~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~~---- 205 (340)
T 1wkr_A 131 NLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILS---- 205 (340)
T ss_dssp HHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEEE----
T ss_pred HHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEccC----
Confidence 43 4799999987432233458999995442 35678888432 6799999 9999998 77641
Q ss_pred ccccccCCCceEEeccCccccccHHHHHHHHHHHHHHhhhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEE
Q 035660 304 FTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLLDMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVL 383 (448)
Q Consensus 304 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l 383 (448)
...+||||||++++||+++|++|.+++++.+. .......++|.. ...+|+|+|+|+ |.+++|
T Consensus 206 -------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~----~~~g~~~~~C~~------~~~~p~i~f~f~-g~~~~i 267 (340)
T 1wkr_A 206 -------STAGIVDTGTTLTLIASDAFAKYKKATGAVAD----NNTGLLRLTTAQ------YANLQSLFFTIG-GQTFEL 267 (340)
T ss_dssp -------EEEEEECTTBCSEEECHHHHHHHHHHHTCEEC----TTTSSEEECHHH------HHTCCCEEEEET-TEEEEE
T ss_pred -------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEc----CCCCeEEeeccc------cccCCcEEEEEC-CEEEEE
Confidence 35899999999999999999999888865432 111112578986 356899999998 899999
Q ss_pred CCCceEEEeC-------CCeEEEEEEecCCCCCCCCCceeeehhhccceEEEEECCCCEEEEecCCCCCCC
Q 035660 384 DVDSLFFQRW-------PHSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYDIGGKKLAFERVDCELLD 447 (448)
Q Consensus 384 ~~~~y~~~~~-------~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~C~~~~ 447 (448)
+|++|+++.. +...|+..+...+.....+..||||++|||++|+|||++++|||||+++|+..+
T Consensus 268 ~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~ 338 (340)
T 1wkr_A 268 TANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTTAT 338 (340)
T ss_dssp CTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTTCC
T ss_pred cHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCCCC
Confidence 9999998753 124676433221111101135999999999999999999999999999998754
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=1.1e-39 Score=306.88 Aligned_cols=210 Identities=23% Similarity=0.370 Sum_probs=174.9
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC---CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL---DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNFL 168 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~---~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~~ 168 (448)
..+.+|+++|.||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+|++.
T Consensus 10 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~------------------- 68 (239)
T 1b5f_A 10 DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACR--AHSMYESSDSSTYKE------------------- 68 (239)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHH--TSCCBCGGGCTTCEE-------------------
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccC--CCCCCCCccCCCeee-------------------
Confidence 35689999999999999999999999999999999997 486 468999999999988
Q ss_pred CCceeeeeeCCCCceeceeEEEEEEEecCCCCceeeccEEEEeEEcCCC-Cc-CCCcceeeecCCCCCc------hhhh-
Q 035660 169 NQCLYNQTYIRGPSASGVLATEQLIFKTSDEGKIRVQDVVFGCGHDNGK-FE-DRHLSGVFGLGFSRLS------LVSQ- 239 (448)
Q Consensus 169 ~~~~~~~~Ygdgs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------~~~q- 239 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++ +.++++.|||+....+ .| ....+||||||+..++ +++|
T Consensus 69 ~~~~~~i~Yg~Gs-~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~l~~qg 142 (239)
T 1b5f_A 69 NGTFGAIIYGTGS-ITGFFSQDSVTIGD-----LVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYNMLNQG 142 (239)
T ss_dssp EEEEEEEECSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHHHHHTT
T ss_pred CCcEEEEEECCCc-EEEEEEEEEEEECC-----cEEccEEEEEEEeccCccccccCcceEEecCccccccHHHHHHHHCC
Confidence 4789999999998 79999999999987 8999999999987654 23 2347999999999887 3344
Q ss_pred -h-cCceeEeccCCCCCCCcceeEEeCCCCCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCC
Q 035660 240 -L-GSTFSYCVGNLNDPYYFHNKLVLGHGARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNG 312 (448)
Q Consensus 240 -l-~~~FS~~L~~~~~~~~~~g~l~fG~~~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~ 312 (448)
+ .++||+||.+..+ ....|.|+||+ .|.. +.|+|+ ....+|.|.|++|+|+++.+.+.. ...
T Consensus 143 ~i~~~~FS~~l~~~~~-~~~~G~l~fGg-~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~~--------~~~ 211 (239)
T 1b5f_A 143 LVKERRFSFWLNRNVD-EEEGGELVFGG-LDPNHFRGDHTYVPV-TYQYYWQFGIGDVLIGDKSTGFCA--------PGC 211 (239)
T ss_dssp CCSSSEEEEEECCSCS-SSCCEEEEETS-CCGGGEEEEEEEEEE-EEETTEEEEECCEEETTEECCTTT--------TCE
T ss_pred CCCCCEEEEEEeCCCC-CCCCeEEEECC-cChhhccCceEEEEc-ccCCeEEEEeeEEEECCEEecccC--------CCC
Confidence 2 5899999988532 22358899995 4443 457777 456799999999999999876432 146
Q ss_pred ceEEeccCccccccHHHHHHHHHHHHH
Q 035660 313 GVIIDSGSSATWLVKAGYDALLHEVES 339 (448)
Q Consensus 313 ~~iiDSGTt~~~lp~~~~~~l~~~~~~ 339 (448)
.+||||||++++||+++|++|.+++++
T Consensus 212 ~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 212 QAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp EEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred EEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 899999999999999999999998753
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=1.7e-34 Score=272.02 Aligned_cols=217 Identities=15% Similarity=0.265 Sum_probs=165.9
Q ss_pred eeeccEEEEeEEcCCC-CcC-CCcceeeecCCCCCc------hhhhh-------cCceeEeccCCCCCCCcceeEEeCCC
Q 035660 202 IRVQDVVFGCGHDNGK-FED-RHLSGVFGLGFSRLS------LVSQL-------GSTFSYCVGNLNDPYYFHNKLVLGHG 266 (448)
Q Consensus 202 ~~~~~~~fg~~~~~~~-~~~-~~~~GilGLg~~~~s------~~~ql-------~~~FS~~L~~~~~~~~~~g~l~fG~~ 266 (448)
+++++|.|||++...+ .|. ...+||||||++.++ +++|| +++||+||.+..+. ...|.|+||+
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~-~~~G~l~fGg- 80 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDA-QPGGELMLGG- 80 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTC-SSCEEEEETS-
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCC-CCCcEEEECC-
Confidence 7899999999998866 343 348999999998765 33443 58999999985432 1258899995
Q ss_pred CCCC-----CccccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHHHHHHHHHHHHHHh
Q 035660 267 ARIE-----GDSTPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKAGYDALLHEVESLL 341 (448)
Q Consensus 267 ~~~~-----~~~~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~ 341 (448)
.|.+ +.|+|+ ..+.+|.|++++|+|+++.+... ....+||||||++++||++++++|.+++++..
T Consensus 81 ~d~~~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~---------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~ 150 (241)
T 1lya_B 81 TDSKYYKGSLSYLNV-TRKAYWQVHLDQVEVASGLTLCK---------EGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP 150 (241)
T ss_dssp CCGGGEEEEEEEEEC-SSBTTBEEEEEEEEETTSCEEST---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE
T ss_pred cCHHHcCCceEEEEC-ccccEEEEEEeEEEECCeeEecc---------CCCEEEEECCCccccCCHHHHHHHHHHhCCee
Confidence 5544 456777 45789999999999999764211 25689999999999999999999999986542
Q ss_pred hhcccccccCCcccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCC--CeEEEEEEecCCCCCCCCCceeeeh
Q 035660 342 DMWLTRYRFDSWTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGM 419 (448)
Q Consensus 342 ~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~ 419 (448)
. ......++|+. ...+|+|+|+|+ |++++||+++|+++..+ +..|+..+...+.+....+.||||+
T Consensus 151 ~-----~~g~~~~~C~~------~~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~ 218 (241)
T 1lya_B 151 L-----IQGEYMIPCEK------VSTLPAITLKLG-GKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGD 218 (241)
T ss_dssp E-----ETTEEEEEGGG------GGGSCCEEEEET-TEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECH
T ss_pred c-----cCCcEEEECCC------CccCCeEEEEEC-CEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEech
Confidence 1 11122678986 357999999997 89999999999998764 4689964433221111124799999
Q ss_pred hhccceEEEEECCCCEEEEecCC
Q 035660 420 MAQQNYNVAYDIGGKKLAFERVD 442 (448)
Q Consensus 420 ~fl~~~yvvfD~~~~riGfa~~~ 442 (448)
+|||++|+|||++++|||||+++
T Consensus 219 ~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 219 VFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp HHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHhcceEEEEECCCCEEEEEEcC
Confidence 99999999999999999999874
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.87 E-value=1.2e-22 Score=162.57 Aligned_cols=83 Identities=28% Similarity=0.479 Sum_probs=76.7
Q ss_pred cccceEEEEEEecCCCceEEEEEeCCCCceEEEcCCCC----CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 035660 92 KVFSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCRPCL----DCSQQFGPIFDPSMSSSYADLPCYSEYCWYSPNVKCNF 167 (448)
Q Consensus 92 ~~~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~C~----~C~~~~~~~ydp~~Sst~~~~~C~s~~C~~~~~~~C~~ 167 (448)
..+.+|+++|.||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+|++.
T Consensus 10 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~--~~~~y~p~~SsT~~~------------------ 69 (97)
T 1lya_A 10 YMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW--IHHKYNSDKSSTYVK------------------ 69 (97)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHH--TSCCBCGGGCTTCEE------------------
T ss_pred CCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccC--CCCCCCchhCCCcee------------------
Confidence 35689999999999999999999999999999999997 586 478999999999998
Q ss_pred CCCceeeeeeCCCCceeceeEEEEEEEec
Q 035660 168 LNQCLYNQTYIRGPSASGVLATEQLIFKT 196 (448)
Q Consensus 168 ~~~~~~~~~Ygdgs~~~G~~~~D~v~~~~ 196 (448)
.+|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 70 -~~~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 70 -NGTSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp -EEEEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred -CCCcEEEEECCcE-EEEEEEEEEEEECC
Confidence 4789999999999 89999999999976
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.67 E-value=1.1e-16 Score=125.48 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=66.1
Q ss_pred cccceeccCCCccccCCeEEEEEcCCcEEEECCCceEEEeCC--CeEEEEEEecCCCCCCCCCceeeehhhccceEEEEE
Q 035660 353 WTLCYRGTASHDLIGFPAVTFHFAGGAELVLDVDSLFFQRWP--HSFCMAVLPSFVNGENYTSLSLIGMMAQQNYNVAYD 430 (448)
Q Consensus 353 ~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~yvvfD 430 (448)
.++|.. ...+|+|+|+|+ |++++|+|++|+++... ...|++.+...+.+ ..++.||||++|||++|+|||
T Consensus 4 ~v~C~~------~~~~P~i~f~~g-g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~vfD 75 (87)
T 1b5f_B 4 QVDCNT------LSSMPNVSFTIG-GKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTVFD 75 (87)
T ss_dssp EECGGG------GGGCCCEEEEET-TEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEEEE
T ss_pred EEECCC------CCcCCcEEEEEC-CEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEEEE
Confidence 578986 357999999997 89999999999998654 36899755443211 112579999999999999999
Q ss_pred CCCCEEEEecCC
Q 035660 431 IGGKKLAFERVD 442 (448)
Q Consensus 431 ~~~~riGfa~~~ 442 (448)
++++|||||+++
T Consensus 76 ~~~~riGfA~~~ 87 (87)
T 1b5f_B 76 YGNLLVGFAEAA 87 (87)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCEEEEEEcC
Confidence 999999999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.12 Score=43.32 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=27.1
Q ss_pred cceEEEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 94 FSLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 94 ~~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
.+.+++++.|+ ++++.+++|||++.+.+...
T Consensus 24 ~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~ 54 (148)
T 2i1a_A 24 VPMLYINIEIN--NYPVKAFVDTGAQTTIMSTR 54 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred cceEEEEEEEC--CEEEEEEEECCCCccccCHH
Confidence 46799999999 89999999999999888543
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=92.38 E-value=0.24 Score=41.73 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=24.9
Q ss_pred eeeehhhccceEEEEECCCCEEEEecC
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKLAFERV 441 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~riGfa~~ 441 (448)
.|||..||+.+-.+.|+++++|-|...
T Consensus 109 ~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 109 MLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp EEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred eeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 899999999999999999999988654
No 40
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.43 Score=39.91 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=23.8
Q ss_pred eeeehhhccceEEEEECCCCEEEEe
Q 035660 415 SLIGMMAQQNYNVAYDIGGKKLAFE 439 (448)
Q Consensus 415 ~ilG~~fl~~~yvvfD~~~~riGfa 439 (448)
.|||..||+++-+..|+++++|-|.
T Consensus 110 ~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 110 VLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp EEECHHHHHHTTCEEETTTTEEEET
T ss_pred eEecHHHHhhCCEEEECCCCEEEEc
Confidence 8999999999999999999999885
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=86.52 E-value=0.66 Score=36.46 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=23.8
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEE
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQ 124 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~ 124 (448)
-++.|.|| .|.+.+++|||.+++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 46789999 999999999999999997
No 42
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=85.64 E-value=0.95 Score=35.16 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.9
Q ss_pred EEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 98 FMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 98 ~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
+++|.|| .|.+.+++|||.+++-+.-.
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 5779999 99999999999999998544
No 43
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=82.54 E-value=1.5 Score=34.05 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=23.8
Q ss_pred EEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 98 FMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 98 ~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
+++|.|| +|.+.+++|||.+++-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 5779999 99999999999999998543
No 44
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=81.52 E-value=1.5 Score=34.74 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.7
Q ss_pred EEEEEec---CCCceEEEEEeCCCCceEEEcCCC
Q 035660 98 FMNFTIG---QPPIPQFTVMDTGSTLLWVQCRPC 128 (448)
Q Consensus 98 ~~~v~iG---tP~q~~~l~vDTGS~~~Wv~~~~C 128 (448)
.++|.|| +|+|.+..++|||-+++-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4566666 789999999999999999986653
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=78.28 E-value=1.9 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred EEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 98 FMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 98 ~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
++ |.|| .|.+.+++|||.+++-+.-.
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 44 9999 99999999999999988643
No 46
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=73.79 E-value=3.3 Score=32.87 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=24.8
Q ss_pred EEEEEecCCCceEEEEEeCCCCceEEEcCC
Q 035660 98 FMNFTIGQPPIPQFTVMDTGSTLLWVQCRP 127 (448)
Q Consensus 98 ~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~~ 127 (448)
.+.+.|| .|.+.+++|||-+++-+.-..
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEeccc
Confidence 5779999 999999999999999997654
No 47
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=73.08 E-value=2.8 Score=35.08 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=26.9
Q ss_pred ceEEEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 95 SLFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 95 ~~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
..|++++.|. .+++.++||||++.+.+...
T Consensus 23 ~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 23 TMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 4699999999 99999999999999988654
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=61.51 E-value=7.3 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.6
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceEEEcC
Q 035660 96 LFFMNFTIGQPPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 96 ~Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~~ 126 (448)
.-++.+.|+ .|.+.+++|||.+.+-+.-.
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 346779999 99999999999999988543
No 49
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=58.73 E-value=7.3 Score=31.43 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=19.4
Q ss_pred ecCCCceEEEEEeCCCCceEEEcCC
Q 035660 103 IGQPPIPQFTVMDTGSTLLWVQCRP 127 (448)
Q Consensus 103 iGtP~q~~~l~vDTGS~~~Wv~~~~ 127 (448)
|| .|.+.+++|||-+++-+.-..
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 66 788899999999999997553
No 50
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=57.59 E-value=8.6 Score=33.83 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.6
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEE
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQ 124 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~ 124 (448)
-.++|.|| .|.+.+++|||.+++-+.
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~ 34 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIE 34 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEe
Confidence 46789999 999999999999999885
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=36.87 E-value=29 Score=30.47 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceEEEc
Q 035660 97 FFMNFTIGQPPIPQFTVMDTGSTLLWVQC 125 (448)
Q Consensus 97 Y~~~v~iGtP~q~~~l~vDTGS~~~Wv~~ 125 (448)
=.+++.|| .|.+.+++|||.+++-+..
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeec
Confidence 46889999 8999999999999998843
No 52
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=23.09 E-value=72 Score=28.28 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=23.4
Q ss_pred ceEEEE---EEecC-----CCceEEEEEeCCCCceEEEcC
Q 035660 95 SLFFMN---FTIGQ-----PPIPQFTVMDTGSTLLWVQCR 126 (448)
Q Consensus 95 ~~Y~~~---v~iGt-----P~q~~~l~vDTGS~~~Wv~~~ 126 (448)
+.|.+. |.||. +.....++||||++++++|..
T Consensus 188 ~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~ 227 (239)
T 1b5f_A 188 YYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTA 227 (239)
T ss_dssp TTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHH
T ss_pred CeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHH
Confidence 456555 66775 234678999999999998753
No 53
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=20.76 E-value=68 Score=30.00 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=25.9
Q ss_pred ccccccCceEEEEEeEEEEcCEEeecCCccccccccCCCceEEeccCccccccHH
Q 035660 274 TPLEVINGRYYITLEAISIGGKMLDIDPDIFTRKTWDNGGVIIDSGSSATWLVKA 328 (448)
Q Consensus 274 ~pl~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 328 (448)
.||......|.++ |+||. |++ ...++||||++.+++|..
T Consensus 5 ~~l~~~~~~Y~~~---i~iGt-----P~Q--------~~~v~~DTGSs~~Wv~~~ 43 (339)
T 3fv3_A 5 LSLINEGPSYASK---VSVGS-----NKQ--------QQTVIIDTGSSDFWVVDS 43 (339)
T ss_dssp EEEEECSSSEEEE---EEETT-----TTE--------EEEEEEETTCCCEEEEEE
T ss_pred eEEEcCCCEEEEE---EEEcC-----CCc--------EEEEEEeCCCCceEEecC
Confidence 3454455667654 67874 222 236899999999999843
Done!