Query 035661
Match_columns 211
No_of_seqs 215 out of 1524
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a01_A Homeodomain-containing 99.8 2.4E-20 8.4E-25 137.0 7.9 76 11-86 11-86 (93)
2 2da3_A Alpha-fetoprotein enhan 99.8 4.4E-20 1.5E-24 131.5 6.3 67 10-76 10-76 (80)
3 1nk2_P Homeobox protein VND; h 99.8 7.2E-20 2.5E-24 129.8 7.2 67 13-79 5-71 (77)
4 2dmt_A Homeobox protein BARH-l 99.8 6.3E-20 2.2E-24 131.0 6.9 64 13-76 13-76 (80)
5 2vi6_A Homeobox protein nanog; 99.8 4.1E-20 1.4E-24 125.8 5.0 61 16-76 2-62 (62)
6 2cra_A Homeobox protein HOX-B1 99.8 6.7E-20 2.3E-24 127.7 5.8 63 14-76 4-66 (70)
7 2cue_A Paired box protein PAX6 99.8 1.7E-19 5.7E-24 128.9 7.9 63 15-77 5-67 (80)
8 2h1k_A IPF-1, pancreatic and d 99.8 9.4E-20 3.2E-24 124.4 6.1 60 17-76 3-62 (63)
9 2dmq_A LIM/homeobox protein LH 99.8 1.1E-19 3.6E-24 129.7 6.6 65 14-78 4-68 (80)
10 2hdd_A Protein (engrailed home 99.8 8.6E-20 2.9E-24 123.8 5.8 58 17-74 3-60 (61)
11 1puf_A HOX-1.7, homeobox prote 99.8 2.9E-19 9.8E-24 126.7 8.5 65 13-77 9-73 (77)
12 2dms_A Homeobox protein OTX2; 99.8 1.3E-19 4.5E-24 129.3 6.7 64 14-77 4-67 (80)
13 2dmu_A Homeobox protein goosec 99.8 1.6E-19 5.6E-24 125.6 7.0 63 15-77 5-67 (70)
14 2kt0_A Nanog, homeobox protein 99.8 1.1E-19 3.8E-24 130.7 6.1 64 13-76 18-81 (84)
15 1ig7_A Homeotic protein MSX-1; 99.8 1.6E-19 5.3E-24 121.2 6.4 57 18-74 1-57 (58)
16 2da2_A Alpha-fetoprotein enhan 99.8 1.1E-19 3.8E-24 126.4 5.8 64 14-77 4-67 (70)
17 2l7z_A Homeobox protein HOX-A1 99.8 2.2E-19 7.4E-24 126.2 7.1 64 14-77 4-67 (73)
18 1bw5_A ISL-1HD, insulin gene e 99.8 9.5E-20 3.3E-24 125.4 5.1 61 16-76 2-62 (66)
19 2e1o_A Homeobox protein PRH; D 99.8 2.1E-19 7.2E-24 125.1 6.8 63 15-77 5-67 (70)
20 1fjl_A Paired protein; DNA-bin 99.8 2.2E-19 7.7E-24 128.4 7.0 64 13-76 14-77 (81)
21 1zq3_P PRD-4, homeotic bicoid 99.8 2.4E-19 8.1E-24 124.3 6.8 62 17-78 2-63 (68)
22 2da1_A Alpha-fetoprotein enhan 99.8 1.3E-19 4.3E-24 126.1 5.4 64 14-77 4-67 (70)
23 2da4_A Hypothetical protein DK 99.8 1.2E-19 4E-24 129.6 5.2 65 13-77 4-72 (80)
24 2djn_A Homeobox protein DLX-5; 99.8 1.8E-19 6.2E-24 125.5 5.9 63 14-76 4-66 (70)
25 1ftt_A TTF-1 HD, thyroid trans 99.8 2.1E-19 7.2E-24 124.5 6.1 62 17-78 2-63 (68)
26 1ahd_P Antennapedia protein mu 99.8 1.5E-19 5.1E-24 125.4 5.4 61 17-77 2-62 (68)
27 2r5y_A Homeotic protein sex co 99.8 2.1E-19 7.3E-24 130.5 5.9 63 14-76 25-87 (88)
28 1jgg_A Segmentation protein EV 99.8 2.6E-19 8.9E-24 121.0 6.0 58 18-75 2-59 (60)
29 1wh5_A ZF-HD homeobox family p 99.8 1.3E-19 4.5E-24 129.7 4.7 61 14-74 14-78 (80)
30 2k40_A Homeobox expressed in E 99.8 2.6E-19 8.8E-24 123.6 5.5 62 17-78 1-62 (67)
31 1yz8_P Pituitary homeobox 2; D 99.8 1.5E-19 5E-24 125.3 4.1 63 16-78 2-64 (68)
32 3rkq_A Homeobox protein NKX-2. 99.8 4.6E-19 1.6E-23 118.5 6.3 57 17-73 2-58 (58)
33 2m0c_A Homeobox protein arista 99.8 4.9E-19 1.7E-23 124.5 6.5 65 13-77 5-69 (75)
34 1akh_A Protein (mating-type pr 99.8 2.6E-19 8.9E-24 121.2 4.8 59 15-73 3-61 (61)
35 1b8i_A Ultrabithorax, protein 99.8 3.3E-19 1.1E-23 127.7 5.6 63 14-76 17-79 (81)
36 1uhs_A HOP, homeodomain only p 99.8 1.1E-18 3.8E-23 122.1 6.8 59 18-76 2-61 (72)
37 2ecc_A Homeobox and leucine zi 99.8 6.6E-19 2.3E-23 124.8 5.7 59 19-77 5-63 (76)
38 1wh7_A ZF-HD homeobox family p 99.8 3E-19 1E-23 127.9 3.8 61 13-74 13-78 (80)
39 2hi3_A Homeodomain-only protei 99.8 1.4E-18 4.8E-23 122.0 6.8 59 18-76 3-62 (73)
40 3a02_A Homeobox protein arista 99.8 7.3E-19 2.5E-23 118.8 5.1 57 20-76 2-58 (60)
41 3a03_A T-cell leukemia homeobo 99.7 1.1E-18 3.8E-23 116.4 5.6 54 22-75 2-55 (56)
42 1b72_A Protein (homeobox prote 99.7 1.2E-18 4.3E-23 128.7 6.3 63 15-77 32-94 (97)
43 2ly9_A Zinc fingers and homeob 99.7 1.8E-18 6.1E-23 121.5 6.7 62 16-77 5-66 (74)
44 2da5_A Zinc fingers and homeob 99.7 1.9E-18 6.5E-23 122.0 6.3 59 19-77 9-67 (75)
45 3nar_A ZHX1, zinc fingers and 99.7 1.3E-18 4.5E-23 128.3 5.6 69 10-78 18-86 (96)
46 1x2n_A Homeobox protein pknox1 99.7 2.3E-18 7.7E-23 120.8 6.4 64 14-77 4-70 (73)
47 1puf_B PRE-B-cell leukemia tra 99.7 3.4E-18 1.2E-22 119.9 6.8 61 18-78 2-65 (73)
48 2dn0_A Zinc fingers and homeob 99.7 2.2E-18 7.4E-23 121.9 5.5 60 18-77 9-68 (76)
49 1du6_A PBX1, homeobox protein 99.7 1.7E-18 5.7E-23 118.4 4.5 59 16-74 2-63 (64)
50 2cuf_A FLJ21616 protein; homeo 99.7 3.2E-18 1.1E-22 126.0 6.2 64 14-77 4-82 (95)
51 1b72_B Protein (PBX1); homeodo 99.7 6.6E-18 2.3E-22 122.1 7.2 61 18-78 2-65 (87)
52 2ecb_A Zinc fingers and homeob 99.7 5.5E-18 1.9E-22 123.6 6.5 57 21-77 15-71 (89)
53 1k61_A Mating-type protein alp 99.7 8.9E-18 3.1E-22 113.3 5.9 56 20-75 1-59 (60)
54 2cqx_A LAG1 longevity assuranc 99.7 4.2E-18 1.4E-22 119.5 4.4 63 14-76 5-68 (72)
55 1wi3_A DNA-binding protein SAT 99.7 1E-17 3.4E-22 115.5 5.7 60 14-73 4-64 (71)
56 1au7_A Protein PIT-1, GHF-1; c 99.7 5.7E-18 2E-22 134.0 5.2 63 13-75 83-145 (146)
57 1mnm_C Protein (MAT alpha-2 tr 99.7 1.1E-17 3.7E-22 121.2 6.2 60 15-74 25-87 (87)
58 2dmn_A Homeobox protein TGIF2L 99.7 1.5E-17 5.3E-22 119.6 6.7 65 14-78 4-71 (83)
59 2dmp_A Zinc fingers and homeob 99.7 2E-17 6.9E-22 120.5 7.4 58 20-77 16-73 (89)
60 1e3o_C Octamer-binding transcr 99.7 7.9E-18 2.7E-22 135.0 5.3 62 14-75 98-159 (160)
61 1le8_B Mating-type protein alp 99.7 9.3E-18 3.2E-22 120.7 5.0 60 18-77 3-65 (83)
62 2xsd_C POU domain, class 3, tr 99.7 7.2E-18 2.5E-22 135.9 4.6 66 13-78 95-160 (164)
63 2da6_A Hepatocyte nuclear fact 99.7 3.4E-17 1.2E-21 122.0 7.7 63 14-76 3-86 (102)
64 3d1n_I POU domain, class 6, tr 99.7 1.8E-17 6.1E-22 131.6 6.6 62 13-74 89-150 (151)
65 1lfb_A Liver transcription fac 99.7 8.9E-18 3.1E-22 124.8 4.3 65 13-77 5-90 (99)
66 2l9r_A Homeobox protein NKX-3. 99.7 1.2E-17 4.1E-22 116.4 3.5 58 22-79 9-66 (69)
67 3nau_A Zinc fingers and homeob 99.7 5.2E-17 1.8E-21 111.7 5.4 52 25-76 12-63 (66)
68 3l1p_A POU domain, class 5, tr 99.7 6.3E-17 2.2E-21 129.1 5.9 61 15-75 94-154 (155)
69 2e19_A Transcription factor 8; 99.7 8.3E-17 2.8E-21 110.4 5.1 55 21-75 7-61 (64)
70 1x2m_A LAG1 longevity assuranc 99.7 5.4E-17 1.8E-21 111.3 4.0 51 25-75 8-59 (64)
71 2d5v_A Hepatocyte nuclear fact 99.6 9E-17 3.1E-21 129.0 4.8 65 13-77 93-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 7.1E-16 2.4E-20 106.6 5.0 58 22-79 3-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 5.3E-15 1.8E-19 122.0 2.2 62 13-74 111-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 6E-14 2E-18 117.4 4.6 61 12-72 137-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1E-13 3.5E-18 96.0 4.6 46 26-71 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.6E-13 5.3E-18 99.8 5.4 56 22-77 10-68 (89)
77 1mh3_A Maltose binding-A1 home 99.3 8.8E-13 3E-17 117.3 3.4 55 19-73 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 6.2E-09 2.1E-13 63.4 0.9 22 59-80 1-22 (37)
79 2ys9_A Homeobox and leucine zi 94.3 0.028 9.6E-07 38.4 2.8 44 24-67 13-56 (70)
80 1hjb_A Ccaat/enhancer binding 93.4 0.33 1.1E-05 34.5 7.2 49 69-120 29-77 (87)
81 1ci6_A Transcription factor AT 92.8 0.52 1.8E-05 31.2 7.2 46 69-117 16-61 (63)
82 2wt7_A Proto-oncogene protein 92.1 0.85 2.9E-05 30.1 7.4 46 69-117 16-61 (63)
83 1t2k_D Cyclic-AMP-dependent tr 92.0 0.79 2.7E-05 30.0 7.2 45 69-116 15-59 (61)
84 1gu4_A CAAT/enhancer binding p 91.9 0.28 9.4E-06 34.2 5.0 47 68-117 28-74 (78)
85 1jnm_A Proto-oncogene C-JUN; B 89.5 0.62 2.1E-05 30.6 4.8 45 69-116 15-59 (62)
86 2dgc_A Protein (GCN4); basic d 86.0 1.5 5.1E-05 29.1 5.0 38 69-109 23-60 (63)
87 2jn6_A Protein CGL2762, transp 85.7 0.29 9.9E-06 34.3 1.5 43 21-67 3-46 (97)
88 2elh_A CG11849-PA, LD40883P; s 85.6 1.6 5.4E-05 30.1 5.3 44 18-66 17-60 (87)
89 2glo_A Brinker CG9653-PA; prot 82.8 0.99 3.4E-05 28.7 3.0 45 21-66 3-47 (59)
90 1hlv_A CENP-B, major centromer 81.3 2.5 8.7E-05 30.7 5.2 49 20-71 4-52 (131)
91 3gpv_A Transcriptional regulat 75.3 15 0.00052 27.8 8.2 81 18-120 49-129 (148)
92 2oxj_A Hybrid alpha/beta pepti 75.2 7 0.00024 22.6 4.6 27 82-108 4-30 (34)
93 3m48_A General control protein 72.3 5.8 0.0002 22.8 3.7 26 83-108 4-29 (33)
94 3c3f_A Alpha/beta peptide with 69.9 11 0.00039 21.7 4.6 28 82-109 4-31 (34)
95 3c3g_A Alpha/beta peptide with 68.9 12 0.00042 21.4 4.6 27 83-109 4-30 (33)
96 2yy0_A C-MYC-binding protein; 68.7 10 0.00035 24.1 4.8 32 86-117 19-50 (53)
97 1gd2_E Transcription factor PA 68.0 24 0.00081 23.7 6.8 36 81-116 31-66 (70)
98 1kd8_A GABH AIV, GCN4 acid bas 67.9 13 0.00045 21.7 4.7 30 82-111 4-33 (36)
99 1dh3_A Transcription factor CR 66.3 8.9 0.00031 24.5 4.2 17 96-112 32-48 (55)
100 1kd8_B GABH BLL, GCN4 acid bas 65.4 18 0.00061 21.1 5.3 30 82-111 4-33 (36)
101 1tc3_C Protein (TC3 transposas 62.6 9.3 0.00032 21.9 3.6 41 22-67 4-44 (51)
102 2bni_A General control protein 62.5 15 0.0005 21.3 4.1 27 82-108 4-30 (34)
103 1s7o_A Hypothetical UPF0122 pr 61.5 32 0.0011 24.7 7.1 48 23-75 22-69 (113)
104 1jko_C HIN recombinase, DNA-in 61.2 3.4 0.00012 24.4 1.4 40 23-67 5-44 (52)
105 3hug_A RNA polymerase sigma fa 61.2 13 0.00045 25.2 4.7 47 23-74 37-83 (92)
106 1uo4_A General control protein 60.5 17 0.00057 21.0 4.1 26 83-108 5-30 (34)
107 1iuf_A Centromere ABP1 protein 59.8 21 0.00071 26.7 6.0 51 18-68 6-60 (144)
108 2wt7_B Transcription factor MA 58.5 45 0.0015 23.5 8.2 15 55-69 17-31 (90)
109 1p4w_A RCSB; solution structur 55.9 17 0.00059 25.5 4.7 45 21-71 32-76 (99)
110 2o8x_A Probable RNA polymerase 55.0 8.8 0.0003 24.2 2.7 46 23-73 15-60 (70)
111 3c57_A Two component transcrip 53.4 15 0.00052 25.3 4.0 47 22-74 26-72 (95)
112 2hy6_A General control protein 52.3 32 0.0011 19.8 4.6 27 83-109 5-31 (34)
113 3gp4_A Transcriptional regulat 52.2 70 0.0024 23.8 11.6 40 15-67 32-71 (142)
114 1xsv_A Hypothetical UPF0122 pr 50.9 54 0.0019 23.3 6.8 48 23-75 25-72 (113)
115 2p7v_B Sigma-70, RNA polymeras 50.9 24 0.0008 22.4 4.4 51 23-74 5-55 (68)
116 2rn7_A IS629 ORFA; helix, all 50.4 17 0.00058 25.3 3.9 46 21-66 4-52 (108)
117 2yy0_A C-MYC-binding protein; 50.4 35 0.0012 21.5 4.9 32 79-110 19-50 (53)
118 3lph_A Protein REV; helix-loop 50.2 11 0.00036 25.6 2.5 36 29-78 18-53 (72)
119 2x7l_M HIV REV; nuclear export 49.6 15 0.0005 27.1 3.4 33 30-76 16-48 (115)
120 3i5g_B Myosin regulatory light 49.6 28 0.00096 25.7 5.2 41 20-60 6-51 (153)
121 1hjb_A Ccaat/enhancer binding 49.2 45 0.0015 23.3 5.8 35 86-120 36-70 (87)
122 1je8_A Nitrate/nitrite respons 49.1 21 0.00072 23.8 4.0 48 20-73 18-65 (82)
123 2lv7_A Calcium-binding protein 48.6 45 0.0015 23.0 5.9 48 19-66 25-79 (100)
124 1gd2_E Transcription factor PA 48.6 45 0.0016 22.3 5.5 37 75-111 32-68 (70)
125 3mzy_A RNA polymerase sigma-H 48.3 32 0.0011 24.8 5.3 46 23-74 109-154 (164)
126 1fse_A GERE; helix-turn-helix 47.5 26 0.0009 22.1 4.2 48 20-73 8-55 (74)
127 1r8e_A Multidrug-efflux transp 47.1 39 0.0013 27.4 6.2 71 19-110 40-110 (278)
128 1ku3_A Sigma factor SIGA; heli 45.3 38 0.0013 21.7 4.8 51 22-73 9-59 (73)
129 1tty_A Sigma-A, RNA polymerase 45.0 40 0.0014 22.6 5.0 51 23-74 18-68 (87)
130 1x3u_A Transcriptional regulat 44.9 20 0.00069 23.1 3.3 45 23-73 16-60 (79)
131 1fi6_A EH domain protein REPS1 43.7 22 0.00075 23.9 3.5 43 23-65 2-49 (92)
132 2pmy_A RAS and EF-hand domain- 42.0 12 0.00043 24.9 1.9 47 20-66 17-68 (91)
133 1go4_E MAD1 (mitotic arrest de 41.6 56 0.0019 23.4 5.4 31 80-110 13-43 (100)
134 1ci6_A Transcription factor AT 39.9 74 0.0025 20.5 6.0 29 88-116 25-53 (63)
135 2k27_A Paired box protein PAX- 38.7 55 0.0019 24.2 5.4 46 21-66 81-133 (159)
136 2wq1_A General control protein 38.6 55 0.0019 18.7 4.6 26 83-108 4-29 (33)
137 3m91_A Proteasome-associated A 38.1 73 0.0025 19.9 6.2 29 85-113 15-43 (51)
138 1pdn_C Protein (PRD paired); p 37.7 55 0.0019 22.5 5.0 46 21-66 73-125 (128)
139 3s4r_A Vimentin; alpha-helix, 37.3 1E+02 0.0035 21.4 6.5 37 78-114 55-91 (93)
140 2rnj_A Response regulator prot 37.1 26 0.00087 23.7 3.0 47 22-74 28-74 (91)
141 1t2k_D Cyclic-AMP-dependent tr 37.1 79 0.0027 20.0 6.7 28 89-116 25-52 (61)
142 1c07_A Protein (epidermal grow 36.3 31 0.0011 23.3 3.3 44 23-66 3-51 (95)
143 1rp3_A RNA polymerase sigma fa 36.2 24 0.00084 27.3 3.1 47 23-74 187-233 (239)
144 3ulq_B Transcriptional regulat 35.2 58 0.002 22.2 4.6 44 19-68 25-68 (90)
145 3s9g_A Protein hexim1; cyclin 35.1 82 0.0028 22.6 5.3 20 96-115 68-87 (104)
146 2vz4_A Tipal, HTH-type transcr 35.0 1.1E+02 0.0039 21.2 6.4 36 19-67 35-70 (108)
147 1a93_B MAX protein, coiled coi 34.3 58 0.002 18.8 3.6 20 82-101 10-29 (34)
148 1q06_A Transcriptional regulat 32.3 1.5E+02 0.005 21.7 7.7 79 18-118 33-111 (135)
149 3hh0_A Transcriptional regulat 31.1 1.6E+02 0.0055 21.8 7.5 78 18-120 37-114 (146)
150 3m9b_A Proteasome-associated A 30.8 71 0.0024 26.7 5.1 36 78-113 60-95 (251)
151 4dzn_A Coiled-coil peptide CC- 30.6 73 0.0025 17.6 4.5 24 82-105 5-28 (33)
152 1k78_A Paired box protein PAX5 30.5 1.2E+02 0.0041 21.8 6.0 44 21-67 88-141 (149)
153 2wt7_A Proto-oncogene protein 30.3 1.1E+02 0.0037 19.6 6.6 33 86-118 23-55 (63)
154 2r2v_A GCN4 leucine zipper; co 29.5 84 0.0029 18.0 4.8 27 83-109 5-31 (34)
155 1or7_A Sigma-24, RNA polymeras 28.1 49 0.0017 24.7 3.5 45 24-73 141-185 (194)
156 3fiw_A Putative TETR-family tr 28.0 17 0.0006 28.3 0.9 56 17-73 18-74 (211)
157 1jnm_A Proto-oncogene C-JUN; B 27.8 93 0.0032 19.8 4.3 33 86-118 22-54 (62)
158 2jee_A YIIU; FTSZ, septum, coi 27.6 1.5E+02 0.0051 20.3 7.2 15 98-112 53-67 (81)
159 3iv1_A Tumor susceptibility ge 27.6 1.5E+02 0.0051 20.2 7.7 48 67-114 13-60 (78)
160 2lhi_A Calmodulin, serine/thre 27.5 49 0.0017 24.9 3.4 40 21-60 2-46 (176)
161 3ra3_B P2F; coiled coil domain 27.0 71 0.0024 17.1 2.9 17 93-109 7-23 (28)
162 2hxi_A Putative transcriptiona 26.9 31 0.0011 27.5 2.3 52 20-72 25-77 (241)
163 2x48_A CAG38821; archeal virus 26.9 44 0.0015 19.9 2.5 36 26-66 18-53 (55)
164 1u78_A TC3 transposase, transp 26.8 61 0.0021 22.9 3.7 42 22-68 5-46 (141)
165 2xi8_A Putative transcription 26.5 22 0.00075 21.7 1.0 23 47-69 17-39 (66)
166 2q0o_A Probable transcriptiona 26.0 82 0.0028 24.9 4.7 46 21-72 173-218 (236)
167 3w03_C DNA repair protein XRCC 25.9 1E+02 0.0034 24.5 5.0 36 82-117 141-176 (184)
168 2q24_A Putative TETR family tr 25.5 24 0.00082 26.2 1.2 44 28-73 20-63 (194)
169 3i5g_C Myosin catalytic light 25.4 50 0.0017 24.4 3.1 37 23-59 2-45 (159)
170 2r1j_L Repressor protein C2; p 25.4 24 0.00083 21.6 1.1 23 47-69 21-43 (68)
171 2wuj_A Septum site-determining 25.3 1E+02 0.0035 19.4 4.1 30 84-113 25-54 (57)
172 2nox_A Tryptophan 2,3-dioxygen 25.0 23 0.00078 30.1 1.1 21 190-210 246-266 (281)
173 3bd1_A CRO protein; transcript 24.9 26 0.0009 22.7 1.2 23 47-69 14-36 (79)
174 3he5_B Synzip2; heterodimeric 24.8 1.2E+02 0.0042 18.3 4.4 14 98-111 29-42 (52)
175 1j7q_A CAVP, calcium vector pr 24.7 1.2E+02 0.004 19.2 4.6 38 21-58 5-47 (86)
176 1l3l_A Transcriptional activat 23.9 1E+02 0.0036 24.2 4.9 45 21-71 171-215 (234)
177 2oqq_A Transcription factor HY 23.7 1.3E+02 0.0043 18.1 5.9 34 84-117 8-41 (42)
178 3bs3_A Putative DNA-binding pr 23.6 28 0.00095 22.0 1.1 23 47-69 26-48 (76)
179 3qao_A LMO0526 protein, MERR-l 23.6 2.7E+02 0.0092 22.6 7.5 37 17-66 35-71 (249)
180 1zug_A Phage 434 CRO protein; 23.3 27 0.00092 21.6 1.0 24 47-70 19-42 (71)
181 3clo_A Transcriptional regulat 23.1 87 0.003 25.2 4.3 47 22-74 196-242 (258)
182 1gu4_A CAAT/enhancer binding p 23.0 1.8E+02 0.0062 19.6 5.7 32 89-120 39-70 (78)
183 3w03_C DNA repair protein XRCC 22.6 2E+02 0.0068 22.7 6.2 34 83-116 149-182 (184)
184 2pjp_A Selenocysteine-specific 22.5 44 0.0015 24.0 2.1 44 24-68 1-44 (121)
185 2jpc_A SSRB; DNA binding prote 22.3 47 0.0016 20.1 2.0 40 28-73 3-42 (61)
186 1adr_A P22 C2 repressor; trans 21.7 31 0.0011 21.6 1.1 23 47-69 21-43 (76)
187 1nkp_B MAX protein, MYC proto- 21.7 1.8E+02 0.0063 19.3 5.3 32 87-118 48-79 (83)
188 3oja_B Anopheles plasmodium-re 21.5 3.3E+02 0.011 24.3 8.3 22 99-120 557-578 (597)
189 3fmy_A HTH-type transcriptiona 20.9 1.3E+02 0.0044 19.0 4.1 41 22-69 9-49 (73)
190 2b5a_A C.BCLI; helix-turn-heli 20.8 34 0.0011 21.6 1.1 23 47-69 26-48 (77)
191 3omt_A Uncharacterized protein 20.6 35 0.0012 21.5 1.1 22 47-68 24-45 (73)
192 2wt7_B Transcription factor MA 20.4 2.3E+02 0.0077 19.8 6.6 25 89-113 58-82 (90)
193 2nw8_A Tryptophan 2,3-dioxygen 20.3 42 0.0014 28.8 1.8 20 190-209 247-266 (306)
No 1
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-20 Score=137.04 Aligned_cols=76 Identities=29% Similarity=0.509 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhhhhHHHHH
Q 035661 11 KHPPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQV 86 (211)
Q Consensus 11 ~~~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~~~~~~~~ 86 (211)
...++++||.|++||.+|+..||..|..++||+..++..||..+||+++||+|||||||+++|+...+.......+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~ 86 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQA 86 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHH
Confidence 3455677789999999999999999999999999999999999999999999999999999999876655444443
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-20 Score=131.46 Aligned_cols=67 Identities=22% Similarity=0.454 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 10 QKHPPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 10 ~~~~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
....++++||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+++|+..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3445677888999999999999999999999999999999999999999999999999999999865
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=7.2e-20 Score=129.84 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLEL 79 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~ 79 (211)
.++++||.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+++|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3556678899999999999999999999999999999999999999999999999999999876543
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-20 Score=131.05 Aligned_cols=64 Identities=31% Similarity=0.546 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
..++.||.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4566778999999999999999999999999999999999999999999999999999999865
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.80 E-value=4.1e-20 Score=125.77 Aligned_cols=61 Identities=26% Similarity=0.441 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 16 NKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 16 ~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
++||.|+.||.+|+..||..|..++||+..++.+||..+||++++|++||||||+++|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4568899999999999999999999999999999999999999999999999999999853
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=6.7e-20 Score=127.67 Aligned_cols=63 Identities=22% Similarity=0.450 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
..+.||+|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 356678999999999999999999999999999999999999999999999999999999865
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.7e-19 Score=128.87 Aligned_cols=63 Identities=25% Similarity=0.577 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+.||.|++||.+|+..||..|..++||+..++..||..|||++++|++||||||+++|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999999999999999999999998763
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=9.4e-20 Score=124.44 Aligned_cols=60 Identities=25% Similarity=0.561 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.||.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 567899999999999999999999999999999999999999999999999999999853
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=129.68 Aligned_cols=65 Identities=23% Similarity=0.473 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
..+.||.|++||.+|+..||.+|..++||+..++..||.+|||++++|++||||||+++|++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999997644
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=8.6e-20 Score=123.80 Aligned_cols=58 Identities=28% Similarity=0.560 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.||.|+.||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999986
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=2.9e-19 Score=126.74 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..++.||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 44566789999999999999999999999999999999999999999999999999999998764
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=129.33 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.++.||.|++||.+|+..||..|..++||+..++..||..|||++++|++||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999998764
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=125.65 Aligned_cols=63 Identities=25% Similarity=0.500 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+.||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+++|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 456788999999999999999999999999999999999999999999999999999998653
No 14
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=130.70 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.+.++||.|+.||.+|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567778999999999999999999999999999999999999999999999999999999865
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.6e-19 Score=121.16 Aligned_cols=57 Identities=28% Similarity=0.499 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
||+|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999999999999999999999999999999999999999986
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=126.42 Aligned_cols=64 Identities=25% Similarity=0.417 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..+.||.|++||.+|+..||..|..++||+..++..||..|||+++||++||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 4566789999999999999999999999999999999999999999999999999999998653
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=2.2e-19 Score=126.21 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..+.||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4556789999999999999999999999999999999999999999999999999999998653
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=9.5e-20 Score=125.44 Aligned_cols=61 Identities=28% Similarity=0.534 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 16 NKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 16 ~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
++||.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4578999999999999999999999999999999999999999999999999999999865
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=125.14 Aligned_cols=63 Identities=32% Similarity=0.558 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+.|+.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 456678999999999999999999999999999999999999999999999999999998653
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=2.2e-19 Score=128.40 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.++++||.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|++.
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4667788999999999999999999999999999999999999999999999999999999865
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=2.4e-19 Score=124.27 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
+||.|++||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999987643
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=126.14 Aligned_cols=64 Identities=19% Similarity=0.389 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..+.||.|++||.+|+.+||..|..++||+..++..||..+||+++||++||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4566789999999999999999999999999999999999999999999999999999998653
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=129.59 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccC----CCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTK----KKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~----~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..+++||.|+.||.+|+..||.+|..+ +||+..++.+||.++||+++||+|||||||+|+|+...
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 456677899999999999999999999 99999999999999999999999999999999998653
No 24
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=125.47 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
..+.||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 455678999999999999999999999999999999999999999999999999999999865
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=124.53 Aligned_cols=62 Identities=31% Similarity=0.465 Sum_probs=58.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
+||.|++||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 56889999999999999999999999999999999999999999999999999999987643
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=1.5e-19 Score=125.35 Aligned_cols=61 Identities=25% Similarity=0.560 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4688999999999999999999999999999999999999999999999999999998754
No 27
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.77 E-value=2.1e-19 Score=130.51 Aligned_cols=63 Identities=24% Similarity=0.531 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
..+.||.|++||.+|+..||..|..++||+..++.+||..|||++++|++||||||+++|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 455678999999999999999999999999999999999999999999999999999999864
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=2.6e-19 Score=121.02 Aligned_cols=58 Identities=28% Similarity=0.515 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
||.|+.||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 29
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-19 Score=129.71 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcc----CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTT----KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~----~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
..++||.||.||.+|+..||.+|.. ++||+..+|.+||..|||+++||+|||||||+++|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567789999999999999999999 999999999999999999999999999999999875
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=123.63 Aligned_cols=62 Identities=26% Similarity=0.445 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
.||+|++||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999999999999999999999999999999999999987654
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=1.5e-19 Score=125.28 Aligned_cols=63 Identities=21% Similarity=0.461 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 16 NKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 16 ~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
++||.|+.||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 457889999999999999999999999999999999999999999999999999999987643
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=118.48 Aligned_cols=57 Identities=32% Similarity=0.484 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
+||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 457899999999999999999999999999999999999999999999999999975
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=124.46 Aligned_cols=65 Identities=25% Similarity=0.439 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
...++||.|++||.+|+..||..|..++||+..++..||..+||++++|++||||||+++|+...
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 45566788999999999999999999999999999999999999999999999999999998754
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=2.6e-19 Score=121.24 Aligned_cols=59 Identities=31% Similarity=0.458 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
.+.+|.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999975
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=3.3e-19 Score=127.73 Aligned_cols=63 Identities=24% Similarity=0.444 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
..++||.|++||.+|+..||..|..++||+..++.+||..|||++++|++||||||+++|+..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 345678899999999999999999999999999999999999999999999999999999864
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=122.13 Aligned_cols=59 Identities=22% Similarity=0.464 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTT-KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.++|++||.+|+..||..|.. ++||+..++..||..+||+++||++||||||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 468899999999999999996 99999999999999999999999999999999999865
No 37
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=6.6e-19 Score=124.78 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
++|++||.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+++|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999998754
No 38
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=3e-19 Score=127.92 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
...++||.||.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+++|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456677899999999999999 7999 999999999999999999999999999999999875
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=121.98 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTT-KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
+++|++||.+|+..||..|.. ++||+..++..||..+||+++||++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999994 99999999999999999999999999999999999865
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=7.3e-19 Score=118.81 Aligned_cols=57 Identities=28% Similarity=0.574 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 20 IKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=116.44 Aligned_cols=54 Identities=35% Similarity=0.634 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
|.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999985
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.2e-18 Score=128.67 Aligned_cols=63 Identities=24% Similarity=0.455 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+.||.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+++|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456778999999999999999999999999999999999999999999999999999998764
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=121.50 Aligned_cols=62 Identities=15% Similarity=0.326 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 16 NKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 16 ~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..++.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 44578999999999999999999999999999999999999999999999999999998653
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=122.01 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
++|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+++|++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 46778999999999999999999999999999999999999999999999999998764
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=128.35 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 10 QKHPPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 10 ~~~~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
.+-..+..+|+|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+++|+.+.+
T Consensus 18 ~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 18 GPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 344566677899999999999999999999999999999999999999999999999999999997644
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.3e-18 Score=120.76 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.++.||+|++|+.+|+..||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3456788999999999999999977 999999999999999999999999999999999998754
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=3.4e-18 Score=119.86 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSF---TTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
||+|++||.+|+.+||.+| ..++||+..++..||..+||+++||++||||||+++|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5789999999999999999 999999999999999999999999999999999999987654
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=121.90 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+++|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 356899999999999999999999999999999999999999999999999999998654
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=118.41 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 16 NKLNIKKRLNQEQVRVLERSF---TTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 16 ~~kr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
..+++|++|+.+|+.+||.+| ..++||+..++.+||..+||+++||++||||||+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 356789999999999999999 99999999999999999999999999999999999986
No 50
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.2e-18 Score=126.00 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhC---------------CCccchhhhhhhhHHHHhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLG---------------VPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------L~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.+++||.|+.||++|+.+||..|..++||+..+|++||..|| |++++|++||||||+++|++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 456778999999999999999999999999999999999999 9999999999999999998764
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=6.6e-18 Score=122.12 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSF---TTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
||+|++|+.+|+.+||.+| ..++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5789999999999999999 899999999999999999999999999999999999987643
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=5.5e-18 Score=123.62 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
+.+||.+|+..||+.|..++||+..+|.+||..|||+++||+|||||||+++|++..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999998653
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=8.9e-18 Score=113.33 Aligned_cols=56 Identities=30% Similarity=0.403 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 20 IKKRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
+|++||.+|+.+||..|.. ++||+..++..||.++||+++||++||||||+++|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3689999999999999999 9999999999999999999999999999999999873
No 54
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=4.2e-18 Score=119.54 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSF-TTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
.....++|++++.+|+..||..| ..++||+..+|.+||.++||+++||+|||||||+++|+..
T Consensus 5 ~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 5 SSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34456778889999999999999 9999999999999999999999999999999999999754
No 55
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=115.51 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTT-KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
.+++||.||.|+.+|+..|+.+|.. ++||+...|++||.++||++++|+|||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467789999999999999999999 99999999999999999999999999999997554
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.71 E-value=5.7e-18 Score=133.98 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
..+++||+|++||.+|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345667889999999999999999999999999999999999999999999999999999985
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=121.21 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++++|++|+.+|+..||.+|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445667999999999999999999 999999999999999999999999999999999873
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=119.59 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
..++||+|+.|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+...+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3456788999999999999999987 5999999999999999999999999999999999886544
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=120.49 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 20 IKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
+++.||.+|+.+||..|..++||+..+|.+||..+||++++|++||||||+|+|++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 4456999999999999999999999999999999999999999999999999998653
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=7.9e-18 Score=135.01 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
.+++||+|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35778899999999999999999999999999999999999999999999999999999985
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=9.3e-18 Score=120.65 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
+++|++|+.+|+..||.+|.. ++||+..++..||..+||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 356677999999999999999 999999999999999999999999999999999998754
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.70 E-value=7.2e-18 Score=135.85 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
..+++||+|++||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 346677899999999999999999999999999999999999999999999999999999997643
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=121.97 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh---------------------CCCccchhhhhhhhHHHH
Q 035661 14 PPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQL---------------------GVPARQVAVWYQNKRARW 72 (211)
Q Consensus 14 ~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~l---------------------gL~~rqVkvWFqNRR~r~ 72 (211)
.+++||.|++|++.|+.+||..|..++||+..+|++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45677899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhh
Q 035661 73 KTQS 76 (211)
Q Consensus 73 k~~~ 76 (211)
|++.
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8865
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=131.65 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+.++||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567789999999999999999999999999999999999999999999999999999986
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=8.9e-18 Score=124.81 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHH------------------hC---CCccchhhhhhhhHHH
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQ------------------LG---VPARQVAVWYQNKRAR 71 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~------------------lg---L~~rqVkvWFqNRR~r 71 (211)
+++++||.|+.||++|+..||..|..++||+..+|++||.. || |++++|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45677889999999999999999999999999999999999 88 9999999999999999
Q ss_pred Hhhhhh
Q 035661 72 WKTQSL 77 (211)
Q Consensus 72 ~k~~~~ 77 (211)
+|++..
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 987763
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=116.36 Aligned_cols=58 Identities=33% Similarity=0.534 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLEL 79 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~ 79 (211)
..+|..|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999876543
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=111.70 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 25 NQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 25 t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
|.+|+..||..|..++||+..++.+||..+||+++||++||||||.++|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999754
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.66 E-value=6.3e-17 Score=129.14 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
.++||+|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667889999999999999999999999999999999999999999999999999999974
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-17 Score=110.44 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
+..++.+|+..||..|..++||+..+|.+||.++||++++|++||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 4556799999999999999999999999999999999999999999999988763
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=5.4e-17 Score=111.35 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 25 NQEQVRVLERSF-TTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 25 t~~Ql~~Le~~F-~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
.+.|+..||+.| ..++||+..+|.+||.+|||+++||++||||||+++|+.
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 357899999999 678999999999999999999999999999999999864
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=9e-17 Score=129.03 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
..++.||.|++||.+|+..||..|..++||+..+|..||..+||+++||++||||||+|+|+...
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 34566789999999999999999999999999999999999999999999999999999998654
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=7.1e-16 Score=106.57 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhh
Q 035661 22 KRLNQEQVRVLERSFT---TKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLEL 79 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~---~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~ 79 (211)
.+|+.+|+.+|+.+|. .++||+..++.+||..+||+++||++||||||+|+|+...+.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999876543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.49 E-value=5.3e-15 Score=122.04 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhHHH
Q 035661 13 PPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLG---------------------VPARQVAVWYQNKRAR 71 (211)
Q Consensus 13 ~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~rqVkvWFqNRR~r 71 (211)
..+++||.|+.|++.|+..||+.|..++||+..+|++||..|+ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3466788999999999999999999999999999999999999 9999999999999999
Q ss_pred Hhh
Q 035661 72 WKT 74 (211)
Q Consensus 72 ~k~ 74 (211)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.43 E-value=6e-14 Score=117.42 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhHH
Q 035661 12 HPPPNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLG---------------------VPARQVAVWYQNKRA 70 (211)
Q Consensus 12 ~~~~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~rqVkvWFqNRR~ 70 (211)
..+++.||.|+.|++.|+..||..|..++||+..+|++||..|| |++.+|++||+|||.
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34677788999999999999999999999999999999999998 899999999999998
Q ss_pred HH
Q 035661 71 RW 72 (211)
Q Consensus 71 r~ 72 (211)
..
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=95.98 Aligned_cols=46 Identities=17% Similarity=0.492 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q 035661 26 QEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRAR 71 (211)
Q Consensus 26 ~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r 71 (211)
.+|+..||..|..+++|+..++..||..+||++++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5799999999999999999999999999999999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=99.77 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhh
Q 035661 22 KRLNQEQVRVLERSFTT---KKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSL 77 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~---~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~ 77 (211)
.-|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||+|+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999987 999999999999999999999999999999999987643
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.29 E-value=8.8e-13 Score=117.34 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
+.++.|+..|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467899999999999999999999999999999999999999999999999876
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.62 E-value=6.2e-09 Score=63.41 Aligned_cols=22 Identities=36% Similarity=0.984 Sum_probs=19.1
Q ss_pred cchhhhhhhhHHHHhhhhhhhh
Q 035661 59 RQVAVWYQNKRARWKTQSLELD 80 (211)
Q Consensus 59 rqVkvWFqNRR~r~k~~~~~~~ 80 (211)
+||+|||||||+|||++..+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999999886543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.29 E-value=0.028 Score=38.42 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 24 LNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 24 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
.++.-.+.|+..|...+.+.......|+.+..|+..||+-||-.
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34445689999999999999999999999999999999999954
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.40 E-value=0.33 Score=34.52 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
|+|.+++. ....+..+...|..+|..|+.++..|..|+..+...+...+
T Consensus 29 rSR~krk~---r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 29 KSRDKAKM---RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 55655555 34556677788899999999999999999999998888655
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.83 E-value=0.52 Score=31.24 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=36.5
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
|+|.|++. ....+..+.+.+..+|..|+.++..|..|+..+.+.+.
T Consensus 16 R~R~KKk~---~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKRA---EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544443 56677888888999999999999999999998887664
No 82
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.07 E-value=0.85 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=34.5
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
|+|.|++. ....+..+.+.+..+|..|..++..|..++..+...+.
T Consensus 16 rcR~rKk~---~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 16 KCRNRRRE---LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 55677778888888999999999999988888776654
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=91.97 E-value=0.79 Score=29.98 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=34.2
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
++|.|++. ....+..+.+.+..+|..|..++..|..++..+...+
T Consensus 15 k~R~rKk~---~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 15 RSRQKRKV---WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433 5567777888888999999999999999988887665
No 84
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.90 E-value=0.28 Score=34.18 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=34.8
Q ss_pred hHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 68 KRARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 68 RR~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
+|+|.+++. ....+......|..+|..|..++..|..|+..+...+.
T Consensus 28 krSR~krk~---r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKM---RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655 34456667778888999999999999999888876543
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.49 E-value=0.62 Score=30.64 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
++|.|++. ....+..+.+.+..+|..|..++..|..++..+.+.+
T Consensus 15 k~R~rKk~---~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 15 KSRKRKLE---RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544443 5566777777888888888888888888877665544
No 86
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.96 E-value=1.5 Score=29.06 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=22.0
Q ss_pred HHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035661 69 RARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 69 R~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~ 109 (211)
|+|.|++. ....+..+.+.|..+|..|..++..|..++
T Consensus 23 rsR~RK~~---~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 23 RSRARKLQ---RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443 445556666666666666666666666544
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.72 E-value=0.29 Score=34.32 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTK-KKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~-~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
|..||.++....-..|... .. ...++|+.+|+++..|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3578898876665555332 22 3568999999999999999853
No 88
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.62 E-value=1.6 Score=30.05 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
|+.+..|+.++....-..|. ... ...++|+++|+++..|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 45677899998665555564 222 256889999999999999974
No 89
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=82.79 E-value=0.99 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
|..|+.+........+.. ..+......++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 457999888777554433 332122256899999999999999975
No 90
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=81.32 E-value=2.5 Score=30.71 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q 035661 20 IKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRAR 71 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r 71 (211)
+|+.||.++...+-..+...+.+.. .++|+.+|+++..|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5788999998777777755555543 368999999999999999776543
No 91
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=75.32 E-value=15 Score=27.77 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhhhhHHHHHHhHHHHHHHHH
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRR 97 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~~~~~~~~~~~~l~~e~~~ 97 (211)
...+..|+.+++..|..+ .. .+.+|++-..|+..+...+.... ......+.+......
T Consensus 49 ~~g~R~Y~~~dl~~l~~I------------~~-lr~~G~sL~eIk~~l~~~~~~~~---------~~~~~~~~l~~~~~~ 106 (148)
T 3gpv_A 49 EKGDRIFNEEALKYLEMI------------LC-LKNTGMPIQKIKQFIDWSMEGDS---------TILHRLKLMKQQEAN 106 (148)
T ss_dssp TTCCEEBCHHHHHHHHHH------------HH-HHTTTCCHHHHHHHHHHHHHCGG---------GHHHHHHHHHHHHHH
T ss_pred CCCCeecCHHHHHHHHHH------------HH-HHHcCCCHHHHHHHHHhhhcCCC---------CHHHHHHHHHHHHHH
Confidence 345677888888888433 23 47789999999888864332111 111112223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 035661 98 LEKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 98 l~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
++.+...|...+..+...+..+.
T Consensus 107 l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 107 VLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444
No 92
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=75.24 E-value=7 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEE 108 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e 108 (211)
..+..+.+.++.+|..|++|+.+|+.-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455667778888999999999888764
No 93
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=72.32 E-value=5.8 Score=22.84 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEE 108 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e 108 (211)
.+..+.+.++.+|..|+.|+.+|+.-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566677888888888888888753
No 94
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.86 E-value=11 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e~ 109 (211)
..+..+.+.++.++..|+.|+.+|+.-+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556677788888999999998887643
No 95
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.90 E-value=12 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e~ 109 (211)
.+..+.+.++.+|..|+.|+.+|+.-+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667778888889999998887643
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.73 E-value=10 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 86 VKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 86 ~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
...++|..|+..|+.++..|..++...+..+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666665543
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.01 E-value=24 Score=23.70 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=17.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 81 YNTIQVKLENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 81 ~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
...|......+...+..+..++..|..++..+...+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555444433
No 98
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.90 E-value=13 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEELRQ 111 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~ 111 (211)
..+..+.+.+..++..|+.|+.+|+..+..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 345666777888888888888888876654
No 99
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.29 E-value=8.9 Score=24.46 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035661 96 RRLEKDVKLLKEELRQA 112 (211)
Q Consensus 96 ~~l~~e~~~l~~e~~~~ 112 (211)
..|+.++..|..++..+
T Consensus 32 ~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 32 AVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 100
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=65.42 E-value=18 Score=21.14 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEELRQ 111 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~ 111 (211)
..+....+.++.++..|+.++.+|+.-+..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 455666777888888888888888876543
No 101
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=62.56 E-value=9.3 Score=21.86 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
..++.++...+...|.. .. ...++|+.+|++..-|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 35677776555555533 22 2568899999999999999853
No 102
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.49 E-value=15 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEE 108 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e 108 (211)
..+..+.+.++.++..|+.|+.+|+.-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345666777888888899999888764
No 103
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=61.54 E-value=32 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
.+++.|..++...|-.. ..-.++|..+|+++.-|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 57888888888775433 2357889999999999999997666555543
No 104
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.19 E-value=3.4 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
.++.++...+...+... ....++|+.+|++..-|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666555555432 23568899999999999999864
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.17 E-value=13 Score=25.22 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++.+..+|...|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777777777754322 235788999999999999888655554443
No 106
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=60.52 E-value=17 Score=21.03 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEE 108 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e 108 (211)
.+..+.+.++.+|..|+.|+.+|+.-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45556677888888888888888753
No 107
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=59.83 E-value=21 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCCCCCCCHHHHHHHHHHh-ccCCCCCHHHHHHHHH-Hh--CCCccchhhhhhhh
Q 035661 18 LNIKKRLNQEQVRVLERSF-TTKKKLDTELKLKLAN-QL--GVPARQVAVWYQNK 68 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F-~~~~~p~~~~r~~La~-~l--gL~~rqVkvWFqNR 68 (211)
+++|+++|-+|...+-..+ ..++..+..+....|. +. +++...|..|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4678999999999999999 6777776654444322 56 78888899888664
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.50 E-value=45 Score=23.47 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=9.3
Q ss_pred CCCccchhhhhhhhH
Q 035661 55 GVPARQVAVWYQNKR 69 (211)
Q Consensus 55 gL~~rqVkvWFqNRR 69 (211)
||+..+|.-|=|-||
T Consensus 17 gls~eev~~lKq~RR 31 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRR 31 (90)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655444
No 109
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=55.86 E-value=17 Score=25.54 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRAR 71 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r 71 (211)
...+|+.+.++|...+.-. .-.++|..+|+++.-|+.+..+-+.+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4679999999998866332 23789999999999999887644333
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.95 E-value=8.8 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
.+++.+..+|...|-.. ..-.++|..+|+++..|+.+...-+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888889998876332 23568899999999999988865444444
No 111
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=53.40 E-value=15 Score=25.31 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
..+++.+.++|...+.-.. -.++|..+|+++.-|+.+..+-+.+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999988643332 3789999999999999888755554443
No 112
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=52.28 E-value=32 Score=19.82 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e~ 109 (211)
.+..+.+.+..+|..|+.++.+|+.-+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 445566677888888888888887643
No 113
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.18 E-value=70 Score=23.79 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 15 PNKLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 15 ~~~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
.+....+..|+.+++..|..+ .. .+.+|++-..|+..+..
T Consensus 32 ~r~~~g~R~Y~~~dl~~l~~I------------~~-lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 32 HRNESGVRKFGAEDLRWILFT------------RQ-MRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCTTSCBCBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHHH
T ss_pred cCCCCCCeeeCHHHHHHHHHH------------HH-HHHcCCCHHHHHHHHHH
Confidence 333456788999999998443 33 47788888888877754
No 114
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=50.93 E-value=54 Score=23.31 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQ 75 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~ 75 (211)
.+++.+..+|...|-.. ..-.++|..+|+++.-|+.+...-|.+-+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46778888887765332 2356889999999999999887666555544
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.90 E-value=24 Score=22.41 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++.+.++|...|-...+ ....-.++|..+|+++..|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999998832111 11234678999999999999887655444443
No 116
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=50.40 E-value=17 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHhccCC--CCC-HHHHHHHHHHhCCCccchhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKK--KLD-TELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~--~p~-~~~r~~La~~lgL~~rqVkvWFq 66 (211)
+..||.++....-..+.... +++ .....++|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 45789988765544443221 222 24567899999999999999975
No 117
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.38 E-value=35 Score=21.50 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=23.8
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035661 79 LDYNTIQVKLENALADKRRLEKDVKLLKEELR 110 (211)
Q Consensus 79 ~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~ 110 (211)
.+...++.+++.+......|..++..|..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777788888888877777654
No 118
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=50.18 E-value=11 Score=25.62 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhh
Q 035661 29 VRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLE 78 (211)
Q Consensus 29 l~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~ 78 (211)
+....-.|+.+|||++.-..+ | -.|||.||+.++..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 344555699999998652222 1 25899999887643
No 119
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=49.64 E-value=15 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=22.1
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhh
Q 035661 30 RVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQS 76 (211)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~ 76 (211)
+..+-.|+.+|||.+.-. +|- -+|||.|||.++
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQ 48 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQ 48 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHH
Confidence 344555899999987511 111 269999999876
No 120
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=49.57 E-value=28 Score=25.68 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccc
Q 035661 20 IKKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQ 60 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rq 60 (211)
+|..+|.+|+..|...|.. ..+.+..+...+.+.+|..+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 3567999999999999864 5689999999999999876643
No 121
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.20 E-value=45 Score=23.27 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035661 86 VKLENALADKRRLEKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 86 ~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
.....+...-..|+.++..|..++..+..++...-
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777888888888877777776554
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=49.05 E-value=21 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 20 IKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
.-..+++.+.++|...+. . ..-.++|..+|+++..|+.+..+-+.+.+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 345799999999988542 2 24578999999999999988765444443
No 123
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.62 E-value=45 Score=22.98 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q 035661 19 NIKKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGV--PARQVAVWYQ 66 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL--~~rqVkvWFq 66 (211)
+....++.+|+..|...|.. +.+.+..+...+.+.+|+ ++..|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44567999999999999864 468999999999999875 5666666664
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.58 E-value=45 Score=22.27 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=27.9
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 75 QSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQ 111 (211)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~ 111 (211)
+.++.....+......+..+|..|..++..|..|+..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777888888999999888888764
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=48.30 E-value=32 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++.+..+|...| ....-.++|..+|+++..|+.+...-|.+.|+
T Consensus 109 ~L~~~~r~v~~~~~------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLTYLI------RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHHHHT------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35566666666222 22245789999999999999888654444443
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.46 E-value=26 Score=22.11 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 20 IKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
....+++.+.++|...+ ..+ .-.++|..+|+++.-|..++..-+.+.+
T Consensus 8 ~~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 34568999999998853 222 3468999999999999988865444433
No 127
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=47.13 E-value=39 Score=27.39 Aligned_cols=71 Identities=8% Similarity=-0.034 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhhhhHHHHHHhHHHHHHHHHH
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRRL 98 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~~~~~~~~~~~~l~~e~~~l 98 (211)
..++.|+.+|+..|... ...+.+|++-.+|+..+.++ ... -...+....+.+.++..+|
T Consensus 40 ~g~R~y~~~~~~~l~~i-------------~~l~~~g~~l~~i~~~~~~~-~~~-------~~~~l~~~~~~l~~~i~~l 98 (278)
T 1r8e_A 40 TSYRYYTDSQLIHLDLI-------------KSLKYIGTPLEEMKKAQDLE-MEE-------LFAFYTEQERQIREKLDFL 98 (278)
T ss_dssp TCCEEEETGGGGHHHHH-------------HHHHHTTCCHHHHHHHTTSC-HHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhC-hHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34566888887777332 33588899999999888765 211 1223344444444444444
Q ss_pred HHHHHHHHHHHH
Q 035661 99 EKDVKLLKEELR 110 (211)
Q Consensus 99 ~~e~~~l~~e~~ 110 (211)
+.....|...+.
T Consensus 99 ~~~~~~l~~~~~ 110 (278)
T 1r8e_A 99 SALEQTISLVKK 110 (278)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 128
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.34 E-value=38 Score=21.69 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
..+++.+..+|...|-.... ....-.++|..+|+++..|+.+...-+.+.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35789999999998852100 0123468999999999999988765444444
No 129
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.05 E-value=40 Score=22.55 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++.+..+|...|-.... ....-.++|..+|+++..|+.+...-+.+-|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4788899999888742100 11235688999999999999988655555444
No 130
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.86 E-value=20 Score=23.15 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
.+++.+.++|..+|. .+ .-.++|..+|+++..|+.+...-+.+.+
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 367888888877432 22 2458999999999999988765444444
No 131
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=43.73 E-value=22 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccchhhhh
Q 035661 23 RLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQVAVWY 65 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rqVkvWF 65 (211)
+++.++...+++.|.. ..+.+..+-..+.+.+|++...+...|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999864 456788888888888888776666555
No 132
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=42.05 E-value=12 Score=24.89 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 20 IKKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 20 ~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
.-..++.+++..|...|.. +.+.+..+...+...+|+++..|..+|.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3456888999999999853 4578888888888888988777777664
No 133
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.61 E-value=56 Score=23.44 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=18.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035661 80 DYNTIQVKLENALADKRRLEKDVKLLKEELR 110 (211)
Q Consensus 80 ~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~ 110 (211)
++..++.+++.|..|+.+|..++..|..++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655554
No 134
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.90 E-value=74 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 88 LENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 88 ~~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
.+.+..+...|+.++..|..++..+..++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444444433
No 135
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=38.68 E-value=55 Score=24.17 Aligned_cols=46 Identities=4% Similarity=-0.200 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh-------CCCccchhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQL-------GVPARQVAVWYQ 66 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~l-------gL~~rqVkvWFq 66 (211)
+..++.++...+...+...+..+..+......+. .++...|..|+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 4567888888888888777666655433322222 255666666664
No 136
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.64 E-value=55 Score=18.67 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEE 108 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e 108 (211)
.+..+.+.++.++..|+.|+.+|+.-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555667777888888888887653
No 137
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.13 E-value=73 Score=19.94 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=11.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 85 QVKLENALADKRRLEKDVKLLKEELRQAQ 113 (211)
Q Consensus 85 ~~~~~~l~~e~~~l~~e~~~l~~e~~~~~ 113 (211)
+..+..+...|.+|..-......++..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333333
No 138
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.75 E-value=55 Score=22.51 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCC-------Cccchhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGV-------PARQVAVWYQ 66 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL-------~~rqVkvWFq 66 (211)
...+++++...+......++..+..+......+.|+ +...|..|+.
T Consensus 73 ~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 346788888888888877776665544333222274 6677777764
No 139
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.27 E-value=1e+02 Score=21.44 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 78 ELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQE 114 (211)
Q Consensus 78 ~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~ 114 (211)
......++..++.+..++.+++-+...|..++..+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666677777777777777666665543
No 140
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.13 E-value=26 Score=23.70 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
..+|+.+.++|...+.- + .-.++|..+|+++.-|+.+..+-+.+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 46899999999885432 2 23478999999999999888755544443
No 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.12 E-value=79 Score=20.03 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 89 ENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 89 ~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
+.+..+...|+.++..|..++..+..++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544443
No 142
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=36.28 E-value=31 Score=23.31 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 23 RLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
.++.++...|++.|.. ..+.+..+...+.+.+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999998853 4578888888888888887777666553
No 143
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.20 E-value=24 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
.+++.+..+|...|-. ...-.++|..+|+++..|+.+...-|.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3566666666665522 2235688999999999999888654444443
No 144
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.21 E-value=58 Score=22.16 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNK 68 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNR 68 (211)
.....+|+.+.++|...+. .+ ...++|..||++++-|+....+-
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp ----CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3456799999999988873 22 36789999999999999766543
No 145
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.09 E-value=82 Score=22.58 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035661 96 RRLEKDVKLLKEELRQAQEI 115 (211)
Q Consensus 96 ~~l~~e~~~l~~e~~~~~~~ 115 (211)
..|+.++.+|..|++.+...
T Consensus 68 ~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555443
No 146
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=35.04 E-value=1.1e+02 Score=21.23 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhh
Q 035661 19 NIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQN 67 (211)
Q Consensus 19 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqN 67 (211)
..+..|+.+++..|... .. .+.+|++...|+.++..
T Consensus 35 ~g~R~Y~~~dl~~l~~I------------~~-lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 35 AGHRRYSDADLDRLQQI------------LF-YRELGFPLDEVAALLDD 70 (108)
T ss_dssp SCCEEBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHTC
T ss_pred CCCeecCHHHHHHHHHH------------HH-HHHCCCCHHHHHHHHhC
Confidence 45677999998888433 22 47789998899888864
No 147
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.35 E-value=58 Score=18.79 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKD 101 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e 101 (211)
.+.++.++.+...|..|+.+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 148
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.26 E-value=1.5e+02 Score=21.66 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhhhhHHHHHHhHHHHHHHHH
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRR 97 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~~~~~~~~~~~~l~~e~~~ 97 (211)
...+..|+.+++..|... .. .+.+|++-..|+.++........ .. ....+.+......
T Consensus 33 ~~g~R~Y~~~dl~~l~~I------------~~-lr~~G~sl~eI~~~l~~~~~~~~------~~---~~~~~~l~~~~~~ 90 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLL------------RQ-ARQVGFNLEESGELVNLFNDPQR------HS---ADVKRRTLEKVAE 90 (135)
T ss_dssp TTSCEECCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHHHHHCTTC------CH---HHHHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHH------------HH-HHHCCCCHHHHHHHHHhhhcCCc------hH---HHHHHHHHHHHHH
Confidence 345677999999888433 22 47889999999988864321110 00 0111223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035661 98 LEKDVKLLKEELRQAQEILFA 118 (211)
Q Consensus 98 l~~e~~~l~~e~~~~~~~l~~ 118 (211)
++.+...|......+...+..
T Consensus 91 l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 91 IERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555565665555555554443
No 149
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=31.12 E-value=1.6e+02 Score=21.82 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhhhhhhhhHHHHHHhHHHHHHHHH
Q 035661 18 LNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRR 97 (211)
Q Consensus 18 kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~~~~~~~~~~~~~~~~~l~~e~~~ 97 (211)
...+..|+.+++..|..+ ...+.+|++-..|+..+..... . .....+.+......
T Consensus 37 ~~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~-----~-------~~~~~~~L~~q~~~ 91 (146)
T 3hh0_A 37 EGGHRLYTKDDLYVLQQI-------------QSFKHLGFSLGEIQNIILQRDI-----E-------TEVFLRQMHFQREV 91 (146)
T ss_dssp TTSCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTSSEE-----E-------HHHHHHHHHHHHHH
T ss_pred CCCCEeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHccCC-----C-------HHHHHHHHHHHHHH
Confidence 346778999999888443 2246778888888887754311 0 01111222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 035661 98 LEKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 98 l~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
+..+...|...+..+...+....
T Consensus 92 L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 92 LLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555554443
No 150
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.81 E-value=71 Score=26.67 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=21.1
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 78 ELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQ 113 (211)
Q Consensus 78 ~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~ 113 (211)
..+...+...++.+.++...+++|+.+|++|+.++.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555555556666666666666666666544
No 151
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.55 E-value=73 Score=17.64 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLL 105 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l 105 (211)
..++++..++..|...|+-|...|
T Consensus 5 aalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444444444443
No 152
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.50 E-value=1.2e+02 Score=21.85 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh--------C--CCccchhhhhhh
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQL--------G--VPARQVAVWYQN 67 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~l--------g--L~~rqVkvWFqN 67 (211)
+..++.++...+...+..++..+..+ |+..+ | ++...|..|+..
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~---i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWE---IRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHH---HHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHH---HHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 45688988888988888777666544 33333 5 677778877754
No 153
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.25 E-value=1.1e+02 Score=19.57 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035661 86 VKLENALADKRRLEKDVKLLKEELRQAQEILFA 118 (211)
Q Consensus 86 ~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~ 118 (211)
.....|..+...|+.++..|..++..+..++..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777766666655543
No 154
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.51 E-value=84 Score=18.04 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e~ 109 (211)
.+..+.+.+..++..++.|+.+|+.-+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344556667777777777777776543
No 155
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.13 E-value=49 Score=24.73 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 24 LNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 24 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
+++.+..+|...|-.. ..-.++|..+|+++..|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4444555554443221 22458899999999999988865444444
No 156
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=27.99 E-value=17 Score=28.28 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred CCCCCCCCCHHH-HHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 17 KLNIKKRLNQEQ-VRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 17 ~kr~Rt~~t~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
+++.|...|.++ +......|....|-. .....||+..|++..-|-..|.++..-..
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred CcccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 334455666654 344555677766543 33567899999999999999988655443
No 157
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.84 E-value=93 Score=19.79 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035661 86 VKLENALADKRRLEKDVKLLKEELRQAQEILFA 118 (211)
Q Consensus 86 ~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~ 118 (211)
.....+..+-..|..++..|..++..+..++..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777666665543
No 158
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.63 E-value=1.5e+02 Score=20.34 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 035661 98 LEKDVKLLKEELRQA 112 (211)
Q Consensus 98 l~~e~~~l~~e~~~~ 112 (211)
|..++.+|+.+...-
T Consensus 53 L~~en~qLk~E~~~w 67 (81)
T 2jee_A 53 LERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444554444433
No 159
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.57 E-value=1.5e+02 Score=20.24 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred hhHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 67 NKRARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQAQE 114 (211)
Q Consensus 67 NRR~r~k~~~~~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~ 114 (211)
+||.+++-.+...+..+++.-.+.|......|+.=+.+|..+-..+..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777776666666666666555555555444443
No 160
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.54 E-value=49 Score=24.87 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCccc
Q 035661 21 KKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPARQ 60 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~rq 60 (211)
++.||.+|+..|+..|.. +.+.+..+-..+.+.+|+.+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 46 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSE 46 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhH
Confidence 467999999999999854 4578999988888899876543
No 161
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.05 E-value=71 Score=17.06 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035661 93 ADKRRLEKDVKLLKEEL 109 (211)
Q Consensus 93 ~e~~~l~~e~~~l~~e~ 109 (211)
..|.+|+.|.+.|..|+
T Consensus 7 qknarlkqeiaaleyei 23 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34455555555555443
No 162
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=26.94 E-value=31 Score=27.48 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCCCCHHH-HHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q 035661 20 IKKRLNQEQ-VRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARW 72 (211)
Q Consensus 20 ~Rt~~t~~Q-l~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~ 72 (211)
+|...+.++ +..-.+.|....+-... ..+||+.+|+++.-|-..|.|+-.-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 344566654 34555667777765433 55789999999999999999975443
No 163
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=26.88 E-value=44 Score=19.92 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 26 QEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 26 ~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
+++...+...|. ... ...++|+.+|+++.-|..|+.
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 556555555553 222 356889999999999998874
No 164
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.77 E-value=61 Score=22.92 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNK 68 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNR 68 (211)
..++.++...+...|.. .. ...++|+.+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 56788887777666643 32 25678999999999999999643
No 165
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=26.48 E-value=22 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||+.+|+++..|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999997653
No 166
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.05 E-value=82 Score=24.88 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARW 72 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~ 72 (211)
...+|+.+.++|.-.+.-. .-.++|..||++++-|+....+-+.|-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4569999999997765322 247889999999999998876544443
No 167
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.94 E-value=1e+02 Score=24.52 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 82 NTIQVKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 82 ~~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
..++.-++-+++.+.+|+.++.+|..++++++.+..
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666666666666655443
No 168
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=25.47 E-value=24 Score=26.24 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 28 QVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 28 Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
-++.-...|.+..| . ....+||+..|++..-|-..|.++-.-..
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 35555667888888 5 78899999999999999999998755443
No 169
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=25.42 E-value=50 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHhcc-------CCCCCHHHHHHHHHHhCCCcc
Q 035661 23 RLNQEQVRVLERSFTT-------KKKLDTELKLKLANQLGVPAR 59 (211)
Q Consensus 23 ~~t~~Ql~~Le~~F~~-------~~~p~~~~r~~La~~lgL~~r 59 (211)
.+|.+|+..|+.+|.. ..+.+..+...+.+.||+.++
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 4799999999998852 357888888888889987654
No 170
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.40 E-value=24 Score=21.60 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||+.+|+++..|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56899999999999999987654
No 171
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.34 E-value=1e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 84 IQVKLENALADKRRLEKDVKLLKEELRQAQ 113 (211)
Q Consensus 84 ~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~ 113 (211)
+..-++.+..+...+.+++..|+.++..+.
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666666666555443
No 172
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=24.96 E-value=23 Score=30.08 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.2
Q ss_pred HHhccCCCCCchhhhhhcccC
Q 035661 190 LIGNGGHSNSSGWERNLAGAL 210 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ 210 (211)
.||+-.||+||+||..|...+
T Consensus 246 ~IG~k~GTGGSsG~~yL~~~~ 266 (281)
T 2nox_A 246 VIGFKRGTGGTEGVSYLRRML 266 (281)
T ss_dssp HHTTCCCTTSSCTHHHHHHHT
T ss_pred HhCCCCCCCCCchHHHHHHhc
Confidence 478889999999999886543
No 173
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.90 E-value=26 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||+.+|+++..|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999997654
No 174
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.83 E-value=1.2e+02 Score=18.35 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 035661 98 LEKDVKLLKEELRQ 111 (211)
Q Consensus 98 l~~e~~~l~~e~~~ 111 (211)
|++-.+.|.+|+.+
T Consensus 29 lekiianlrdeiar 42 (52)
T 3he5_B 29 LEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 175
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.72 E-value=1.2e+02 Score=19.20 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHhCCCc
Q 035661 21 KKRLNQEQVRVLERSFTT-----KKKLDTELKLKLANQLGVPA 58 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~ 58 (211)
...++++++..|+..|.. +.+.+..+...+...+|...
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 47 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTY 47 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCC
Confidence 356788999999999853 46789999988888888543
No 176
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.85 E-value=1e+02 Score=24.17 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q 035661 21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRAR 71 (211)
Q Consensus 21 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r 71 (211)
...+|+.+.++|.-.+. . ..-.++|..||++++-|+....+-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45799999999977542 2 235688999999999999877654443
No 177
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.74 E-value=1.3e+02 Score=18.13 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 84 IQVKLENALADKRRLEKDVKLLKEELRQAQEILF 117 (211)
Q Consensus 84 ~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~ 117 (211)
+..+...+...+..|+..++.|..|+.-+++.+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4444455566677788888888888887777654
No 178
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.63 E-value=28 Score=21.96 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||+.+|+++..|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999997654
No 179
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.56 E-value=2.7e+02 Score=22.57 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhh
Q 035661 17 KLNIKKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQ 66 (211)
Q Consensus 17 ~kr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFq 66 (211)
....+..|+.+++..|..+ ...+.+|++-..|+..+.
T Consensus 35 ~~~GyR~Y~~~dl~~L~~I-------------~~lr~~G~sL~eIk~~l~ 71 (249)
T 3qao_A 35 DWNGYRIYSEKDVDKLQQI-------------LFFKELDFPLKKIQQILD 71 (249)
T ss_dssp TTTCCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHH
T ss_pred CCCCCeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHhc
Confidence 3445778999999998433 345788888888887775
No 180
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.25 E-value=27 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKRA 70 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR~ 70 (211)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987543
No 181
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.07 E-value=87 Score=25.16 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKT 74 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k~ 74 (211)
..+++.+.++|...|+.. .-.++|..||+++.-|++...+-|.+-+.
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 468899999988865332 35688999999999999877755554443
No 182
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.96 E-value=1.8e+02 Score=19.64 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035661 89 ENALADKRRLEKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 89 ~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
..+...-..|+.++..|..++..+..++...-
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888888777654
No 183
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.57 E-value=2e+02 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 83 TIQVKLENALADKRRLEKDVKLLKEELRQAQEIL 116 (211)
Q Consensus 83 ~~~~~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l 116 (211)
-+-..+..|.+++.+|++++.+|..|-..+.+.+
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555677788888888888888877776554
No 184
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=22.53 E-value=44 Score=23.99 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q 035661 24 LNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNK 68 (211)
Q Consensus 24 ~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNR 68 (211)
++++|....++....... .+....+|+..+|+++..+.-|+.--
T Consensus 1 ~~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l 44 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQA 44 (121)
T ss_dssp CCHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 355666666666444321 22345589999999999999998643
No 185
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.26 E-value=47 Score=20.12 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q 035661 28 QVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73 (211)
Q Consensus 28 Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR~r~k 73 (211)
|.++|...+.-. . -.++|..+|+++.-|+.+..+-+.+.+
T Consensus 3 e~~vl~l~~~g~--s----~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 3 ERQVLKLIDEGY--T----NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHHHHTSC--C----SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC--C----HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 455665543322 2 358899999999999988765444433
No 186
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.75 E-value=31 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||+.+|+++..|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999987643
No 187
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.70 E-value=1.8e+02 Score=19.27 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035661 87 KLENALADKRRLEKDVKLLKEELRQAQEILFA 118 (211)
Q Consensus 87 ~~~~l~~e~~~l~~e~~~l~~e~~~~~~~l~~ 118 (211)
++..|..++..|+.+...|..++..+.+.+..
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777888888877777776654
No 188
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.47 E-value=3.3e+02 Score=24.32 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 035661 99 EKDVKLLKEELRQAQEILFAKL 120 (211)
Q Consensus 99 ~~e~~~l~~e~~~~~~~l~~~~ 120 (211)
++...++++|+....+++....
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444443
No 189
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.92 E-value=1.3e+02 Score=19.03 Aligned_cols=41 Identities=5% Similarity=0.133 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCccchhhhhhhhH
Q 035661 22 KRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 22 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..++.+.+..+.+..... ..+||..+|+++..|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 468899888887665332 47899999999999999987754
No 190
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.83 E-value=34 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q 035661 47 KLKLANQLGVPARQVAVWYQNKR 69 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNRR 69 (211)
..+||..+|+++..|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999997653
No 191
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.57 E-value=35 Score=21.54 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccchhhhhhhh
Q 035661 47 KLKLANQLGVPARQVAVWYQNK 68 (211)
Q Consensus 47 r~~La~~lgL~~rqVkvWFqNR 68 (211)
..+||..+|+++..|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999999765
No 192
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.42 E-value=2.3e+02 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035661 89 ENALADKRRLEKDVKLLKEELRQAQ 113 (211)
Q Consensus 89 ~~l~~e~~~l~~e~~~l~~e~~~~~ 113 (211)
..+..+...|..|+..+..+...+.
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 193
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=20.33 E-value=42 Score=28.80 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=16.6
Q ss_pred HHhccCCCCCchhhhhhccc
Q 035661 190 LIGNGGHSNSSGWERNLAGA 209 (211)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~ 209 (211)
.||...||+||+|+..|...
T Consensus 247 ~IG~k~GTGGSsG~~yL~~~ 266 (306)
T 2nw8_A 247 VIGFKRGTGGSSGVGFLQQA 266 (306)
T ss_dssp HHTTCCCSSSSCTHHHHHHH
T ss_pred HhCCCCCCCCcchHHHHHHh
Confidence 47888999999999887644
Done!