Query 035663
Match_columns 297
No_of_seqs 133 out of 1530
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03215 ascorbic acid mannose 100.0 3.5E-33 7.6E-38 243.3 23.3 265 5-297 1-304 (373)
2 TIGR01640 F_box_assoc_1 F-box 99.7 1E-16 2.2E-21 134.9 17.8 170 101-295 3-185 (230)
3 PF12937 F-box-like: F-box-lik 98.8 3E-09 6.5E-14 65.9 2.8 38 8-49 1-38 (47)
4 PHA02713 hypothetical protein; 98.6 7.4E-06 1.6E-10 77.7 21.2 191 74-297 273-499 (557)
5 PHA02790 Kelch-like protein; P 98.6 6.3E-06 1.4E-10 76.9 20.0 187 74-296 288-479 (480)
6 PF00646 F-box: F-box domain; 98.5 2.4E-08 5.2E-13 62.1 0.8 40 7-50 2-41 (48)
7 smart00256 FBOX A Receptor for 98.4 1.2E-07 2.5E-12 56.7 1.8 36 11-50 1-36 (41)
8 PHA02713 hypothetical protein; 98.4 4.1E-05 8.8E-10 72.7 19.2 196 74-295 321-541 (557)
9 PHA03098 kelch-like protein; P 98.3 0.00016 3.5E-09 68.5 21.0 189 74-296 312-520 (534)
10 KOG4441 Proteins containing BT 98.3 9.6E-05 2.1E-09 70.2 18.1 193 73-296 349-555 (571)
11 PF08268 FBA_3: F-box associat 98.2 8.2E-06 1.8E-10 62.1 8.0 79 206-295 4-88 (129)
12 KOG4441 Proteins containing BT 98.2 0.00017 3.7E-09 68.5 17.5 190 73-296 301-508 (571)
13 PLN02153 epithiospecifier prot 98.1 0.0013 2.7E-08 58.7 20.4 201 74-295 51-292 (341)
14 PLN02193 nitrile-specifier pro 97.9 0.0029 6.4E-08 59.0 20.4 204 74-296 194-419 (470)
15 PHA03098 kelch-like protein; P 97.9 0.0018 3.9E-08 61.4 19.3 151 116-296 311-473 (534)
16 TIGR03547 muta_rot_YjhT mutatr 97.8 0.02 4.4E-07 51.1 22.8 121 169-297 168-308 (346)
17 PHA02790 Kelch-like protein; P 97.6 0.0041 8.9E-08 58.1 16.0 141 116-297 287-433 (480)
18 PLN02153 epithiospecifier prot 97.5 0.034 7.4E-07 49.5 21.0 161 116-296 50-234 (341)
19 PRK14131 N-acetylneuraminic ac 97.5 0.021 4.5E-07 51.7 19.4 111 169-297 106-258 (376)
20 TIGR03547 muta_rot_YjhT mutatr 97.4 0.016 3.5E-07 51.7 17.3 167 101-297 15-237 (346)
21 PLN02193 nitrile-specifier pro 97.4 0.061 1.3E-06 50.2 21.0 154 116-296 193-360 (470)
22 PRK14131 N-acetylneuraminic ac 97.3 0.088 1.9E-06 47.6 21.3 91 169-265 189-289 (376)
23 PF07734 FBA_1: F-box associat 97.0 0.0088 1.9E-07 47.4 9.7 77 206-294 4-90 (164)
24 KOG2120 SCF ubiquitin ligase, 97.0 0.00032 6.9E-09 59.8 1.3 41 6-50 96-136 (419)
25 TIGR03548 mutarot_permut cycli 96.9 0.19 4.2E-06 44.3 19.0 169 74-266 89-314 (323)
26 TIGR03548 mutarot_permut cycli 96.9 0.078 1.7E-06 46.8 15.9 105 170-296 89-203 (323)
27 KOG1230 Protein containing rep 94.5 1.5 3.3E-05 39.5 13.2 113 168-295 97-223 (521)
28 KOG0379 Kelch repeat-containin 94.0 5 0.00011 37.7 16.8 157 116-296 139-310 (482)
29 PF01344 Kelch_1: Kelch motif; 93.9 0.21 4.6E-06 30.0 5.1 43 248-297 4-46 (47)
30 PF13964 Kelch_6: Kelch motif 92.8 0.2 4.4E-06 30.7 3.7 42 249-297 5-46 (50)
31 KOG2997 F-box protein FBX9 [Ge 92.5 0.06 1.3E-06 46.4 1.3 40 8-50 107-150 (366)
32 KOG4693 Uncharacterized conser 91.9 1.3 2.8E-05 37.6 8.3 108 169-295 157-284 (392)
33 KOG0379 Kelch repeat-containin 91.4 3.7 8.1E-05 38.5 12.0 108 169-295 139-257 (482)
34 PF07646 Kelch_2: Kelch motif; 90.7 0.66 1.4E-05 28.3 4.4 43 249-296 5-47 (49)
35 PF13570 PQQ_3: PQQ-like domai 90.7 0.64 1.4E-05 27.0 4.1 24 196-225 16-39 (40)
36 COG4257 Vgb Streptogramin lyas 90.1 11 0.00025 32.3 13.4 147 97-263 192-346 (353)
37 KOG4341 F-box protein containi 89.3 0.24 5.2E-06 44.6 2.0 40 6-50 71-110 (483)
38 PF13418 Kelch_4: Galactose ox 88.7 1 2.2E-05 27.3 4.1 36 255-297 12-47 (49)
39 KOG2502 Tub family proteins [G 87.8 0.34 7.3E-06 42.4 1.9 42 6-50 43-91 (355)
40 KOG4693 Uncharacterized conser 87.7 16 0.00034 31.3 11.5 177 98-293 25-230 (392)
41 KOG0281 Beta-TrCP (transducin 86.9 0.38 8.2E-06 42.1 1.7 38 9-50 76-117 (499)
42 PF06433 Me-amine-dh_H: Methyl 85.4 26 0.00057 31.1 16.3 91 196-290 183-280 (342)
43 KOG2055 WD40 repeat protein [G 85.0 24 0.00052 32.4 12.0 150 54-228 222-377 (514)
44 KOG1230 Protein containing rep 83.8 34 0.00075 31.2 12.6 120 170-295 155-288 (521)
45 PF13415 Kelch_3: Galactose ox 77.8 4 8.7E-05 24.7 3.4 35 256-296 2-36 (49)
46 smart00564 PQQ beta-propeller 76.9 6.2 0.00013 21.3 3.8 21 208-228 7-27 (33)
47 KOG2445 Nuclear pore complex c 76.4 47 0.001 29.0 10.3 126 163-297 77-219 (361)
48 PF13964 Kelch_6: Kelch motif 75.7 12 0.00027 22.5 5.3 21 116-136 28-48 (50)
49 KOG0274 Cdc4 and related F-box 73.6 1 2.3E-05 42.7 -0.1 40 7-50 107-146 (537)
50 smart00612 Kelch Kelch domain. 67.9 9.8 0.00021 22.1 3.5 21 277-297 13-33 (47)
51 PF01011 PQQ: PQQ enzyme repea 61.1 15 0.00034 20.8 3.2 19 209-227 2-20 (38)
52 PF09372 PRANC: PRANC domain; 60.8 5.4 0.00012 28.3 1.5 25 6-31 70-94 (97)
53 KOG0271 Notchless-like WD40 re 59.8 1.4E+02 0.003 27.1 13.2 17 114-130 177-193 (480)
54 PF07433 DUF1513: Protein of u 59.3 1.2E+02 0.0027 26.5 9.9 137 116-265 138-286 (305)
55 COG4946 Uncharacterized protei 55.9 1.8E+02 0.0039 27.3 13.4 148 101-267 275-434 (668)
56 TIGR03032 conserved hypothetic 55.5 86 0.0019 27.7 8.1 83 204-296 209-302 (335)
57 KOG0289 mRNA splicing factor [ 54.1 1.8E+02 0.0039 26.8 12.9 114 73-201 369-485 (506)
58 PRK11138 outer membrane biogen 53.8 1.7E+02 0.0037 26.4 13.0 28 196-229 330-357 (394)
59 TIGR03300 assembly_YfgL outer 51.6 1.8E+02 0.0038 26.0 11.5 98 102-229 240-342 (377)
60 PF07893 DUF1668: Protein of u 50.8 1.8E+02 0.004 25.9 11.9 33 102-137 75-107 (342)
61 PF13013 F-box-like_2: F-box-l 50.4 11 0.00023 27.6 1.6 34 8-45 22-58 (109)
62 KOG0289 mRNA splicing factor [ 49.9 2.1E+02 0.0046 26.4 11.6 71 208-297 401-472 (506)
63 KOG0283 WD40 repeat-containing 49.5 1.2E+02 0.0026 29.9 8.8 73 101-187 378-453 (712)
64 PF07762 DUF1618: Protein of u 49.1 1.1E+02 0.0023 22.8 8.2 44 250-294 47-93 (131)
65 KOG0294 WD40 repeat-containing 48.0 2E+02 0.0043 25.4 13.4 63 152-228 176-240 (362)
66 PRK04043 tolB translocation pr 47.3 2.3E+02 0.005 26.1 18.1 149 115-295 212-365 (419)
67 PF10282 Lactonase: Lactonase, 47.2 2E+02 0.0044 25.4 11.9 110 165-295 210-332 (345)
68 PF03178 CPSF_A: CPSF A subuni 44.7 2.1E+02 0.0046 24.9 10.3 97 117-228 3-118 (321)
69 COG4946 Uncharacterized protei 42.3 1.9E+02 0.0042 27.1 8.5 56 205-265 233-296 (668)
70 PF00397 WW: WW domain; Inter 39.0 33 0.00071 18.5 2.1 23 103-128 3-26 (31)
71 PRK11138 outer membrane biogen 39.0 2.9E+02 0.0064 24.9 10.9 50 168-228 129-181 (394)
72 KOG0291 WD40-repeat-containing 39.0 2.6E+02 0.0057 27.8 9.2 92 73-179 35-127 (893)
73 KOG0316 Conserved WD40 repeat- 38.0 1.4E+02 0.003 25.3 6.3 23 105-130 31-53 (307)
74 PF13360 PQQ_2: PQQ-like domai 37.0 2.3E+02 0.0049 23.0 12.5 107 102-228 121-233 (238)
75 PF13360 PQQ_2: PQQ-like domai 36.4 2.3E+02 0.005 22.9 14.7 130 73-228 3-143 (238)
76 COG2706 3-carboxymuconate cycl 34.8 3.2E+02 0.0069 24.4 8.4 126 149-295 93-231 (346)
77 COG3055 Uncharacterized protei 33.8 1.6E+02 0.0035 26.4 6.4 83 206-297 45-131 (381)
78 COG2706 3-carboxymuconate cycl 33.7 1.8E+02 0.0039 25.9 6.7 72 208-294 255-330 (346)
79 PF06058 DCP1: Dcp1-like decap 33.4 51 0.0011 24.6 3.0 21 275-295 25-45 (122)
80 KOG4649 PQQ (pyrrolo-quinoline 32.9 3.3E+02 0.0071 23.6 13.5 61 113-186 30-92 (354)
81 PF08793 2C_adapt: 2-cysteine 32.1 21 0.00046 20.4 0.6 10 121-130 12-21 (37)
82 KOG3926 F-box proteins [Amino 32.0 38 0.00082 29.0 2.3 34 5-41 199-232 (332)
83 KOG0296 Angio-associated migra 31.0 4E+02 0.0087 24.0 9.8 98 73-180 212-319 (399)
84 PF08309 LVIVD: LVIVD repeat; 30.7 1.2E+02 0.0026 17.8 4.0 23 208-230 12-34 (42)
85 KOG2048 WD40 repeat protein [G 30.4 2.1E+02 0.0046 27.8 7.0 76 98-186 480-560 (691)
86 cd00201 WW Two conserved trypt 30.1 89 0.0019 16.2 3.3 23 103-128 2-24 (31)
87 smart00135 LY Low-density lipo 29.8 90 0.002 17.3 3.2 20 208-227 21-41 (43)
88 PF14870 PSII_BNR: Photosynthe 29.7 3.8E+02 0.0083 23.5 8.2 53 169-231 166-223 (302)
89 PF03055 RPE65: Retinal pigmen 28.7 3E+02 0.0065 25.8 8.0 80 195-288 124-204 (486)
90 PRK04792 tolB translocation pr 28.3 4.8E+02 0.01 24.1 21.0 110 101-229 226-342 (448)
91 smart00456 WW Domain with 2 co 27.9 1E+02 0.0022 16.3 3.4 23 103-128 3-25 (32)
92 COG4257 Vgb Streptogramin lyas 27.9 1.7E+02 0.0038 25.4 5.5 61 73-136 254-317 (353)
93 TIGR02608 delta_60_rpt delta-6 27.5 1.4E+02 0.0031 18.7 3.8 33 249-287 5-37 (55)
94 PF07569 Hira: TUP1-like enhan 27.0 2.3E+02 0.0051 23.4 6.2 22 208-229 23-44 (219)
95 PF10282 Lactonase: Lactonase, 26.5 2.8E+02 0.0061 24.5 7.2 70 208-294 155-231 (345)
96 KOG1539 WD repeat protein [Gen 26.3 3.1E+02 0.0067 27.6 7.5 27 101-130 585-612 (910)
97 COG3055 Uncharacterized protei 25.9 5E+02 0.011 23.5 8.3 47 246-297 212-265 (381)
98 TIGR02658 TTQ_MADH_Hv methylam 25.3 5E+02 0.011 23.3 19.0 138 73-228 77-226 (352)
99 PF07569 Hira: TUP1-like enhan 23.3 3.3E+02 0.0072 22.5 6.5 80 101-187 20-105 (219)
100 PF00958 GMP_synt_C: GMP synth 23.2 33 0.00071 24.3 0.4 19 5-23 51-69 (93)
101 PTZ00486 apyrase Superfamily; 22.4 2.2E+02 0.0047 25.5 5.3 36 196-237 119-155 (352)
102 PF12768 Rax2: Cortical protei 22.3 1.7E+02 0.0037 25.3 4.7 59 168-231 15-78 (281)
103 PF05096 Glu_cyclase_2: Glutam 21.8 68 0.0015 27.5 2.1 48 208-257 100-148 (264)
104 smart00284 OLF Olfactomedin-li 20.9 5.3E+02 0.012 22.0 9.4 79 196-288 78-162 (255)
105 KOG4499 Ca2+-binding protein R 20.6 2.1E+02 0.0044 24.4 4.5 20 114-133 231-253 (310)
106 KOG4499 Ca2+-binding protein R 20.6 2.6E+02 0.0057 23.7 5.1 54 207-266 222-276 (310)
107 COG3507 XynB Beta-xylosidase [ 20.4 6.9E+02 0.015 24.0 8.4 89 168-267 52-167 (549)
108 PF13859 BNR_3: BNR repeat-lik 20.0 2.2E+02 0.0047 25.1 4.9 39 245-293 172-211 (310)
109 PRK10753 transcriptional regul 20.0 55 0.0012 22.8 1.0 16 120-135 60-75 (90)
No 1
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=100.00 E-value=3.5e-33 Score=243.33 Aligned_cols=265 Identities=21% Similarity=0.368 Sum_probs=174.3
Q ss_pred CCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhhcc-CCCCCCCeEeccc-ccccCCCcc------eE
Q 035663 5 QLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLYHQ-IRPNLPPLLLRNL-NENCVNRQS------CT 76 (297)
Q Consensus 5 ~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~~~-~~~~~P~L~~~~~-~~~~~~~~~------~~ 76 (297)
+.+|++||+|||..|..||+...|++| ||+||++||+++...... ..++.||+++..- +........ .+
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~---~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKR---FRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGA 77 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHH---HHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccc
Confidence 468999999999999999999999999 999999999998864311 2334477775531 011111000 11
Q ss_pred EEecCCCcEEecCCCCCCCCceEEeeCCeEEEEeecC-CCccEEEEcCCCCCeecCCCCCCC-CCce---------eec-
Q 035663 77 FFNPKTKKFREIPLPEVKGRWVSCSSHGWLLTVSCLD-ETQNMFLLHPFTRSQVKLPPPPPG-TQLQ---------FLN- 144 (297)
Q Consensus 77 ~~~~~~~~~~~~~~p~~~~~~~~~s~~Gwll~~~~~~-~~~~~~l~NP~T~~~i~LP~~~~~-~~~~---------~~~- 144 (297)
++.. ...++++.+.. +++|||+.+. .+ ..+++.|.||+++..+.+|+.... ..+. +..
T Consensus 78 ~ls~--~~~~r~~~~~~-------~~~~WLik~~-~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~ 147 (373)
T PLN03215 78 FLSR--AAFFRVTLSSS-------PSKGWLIKSD-MDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDW 147 (373)
T ss_pred eeee--eEEEEeecCCC-------CCCCcEEEEe-ccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEec
Confidence 1111 13555554431 3699999932 12 238999999999999998863211 1111 100
Q ss_pred ----------CceEEEecCCCCC-CEEEEEEeCCCCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEE
Q 035663 145 ----------GLRVITSTSPLDP-DCLVLASLYVSSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFY 211 (297)
Q Consensus 145 ----------~~~~~ls~~p~~~-~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y 211 (297)
..++++...+.++ +|.|++++. .+.+++|+ +++|+.++.+ .+. |+++|+ |+||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~-~g~l~~w~--~~~Wt~l~~~~~~~~-----DIi~~k------GkfY 213 (373)
T PLN03215 148 AKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR-DGKINYWD--GNVLKALKQMGYHFS-----DIIVHK------GQTY 213 (373)
T ss_pred ccccccccceeEEEEEEeecCCCcceEEEEEee-cCcEeeec--CCeeeEccCCCceee-----EEEEEC------CEEE
Confidence 0122222233333 588888874 67899988 6999999876 677 999999 9999
Q ss_pred EeccCCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCC------CCCCceeeEEEEEEE
Q 035663 212 CLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKS------YPCELTCAFIVCKLD 285 (297)
Q Consensus 212 ~l~~~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~------~~~~~~~~~~V~~ld 285 (297)
+++..|.++++|.+...........+.+.. +......||||++|+|++|.++...... +....+.+|+|||+|
T Consensus 214 AvD~~G~l~~i~~~l~i~~v~~~i~~~~~~-g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD 292 (373)
T PLN03215 214 ALDSIGIVYWINSDLEFSRFGTSLDENITD-GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD 292 (373)
T ss_pred EEcCCCeEEEEecCCceeeecceecccccC-CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence 999999999998543211111111111111 1123568999999999999998643111 111256889999999
Q ss_pred CCCCceeecccC
Q 035663 286 LETEKWIMVNNI 297 (297)
Q Consensus 286 ~~~~~W~~v~~L 297 (297)
.+.++|++|++|
T Consensus 293 ~~~~~WveV~sL 304 (373)
T PLN03215 293 DELAKWMEVKTL 304 (373)
T ss_pred CCCCcEEEeccc
Confidence 999999999987
No 2
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.75 E-value=1e-16 Score=134.87 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=119.3
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEe
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCR 175 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~ 175 (297)
||+|+|++ .+. ..++|+||.|+++..||+++....... ...+.|+.|+.+++|+|+.+... .....+|+
T Consensus 3 sCnGLlc~---~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLICF---SYG-KRLVVWNPSTGQSRWLPTPKSRRSNKE--SDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEEEE---ecC-CcEEEECCCCCCEEecCCCCCcccccc--cceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 68999988 433 789999999999999997653211010 01357888998899999988642 24678999
Q ss_pred cCCCceEeeccC-cccccCCcCeEEeCCccccCCeEEEeccCC------cEEEEecCCCCCCceecCCCCCCccccCCce
Q 035663 176 PGDRNWTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCN------FIFRIRFDHPHAPTAEAMPFKPHEYCCNARY 248 (297)
Q Consensus 176 ~g~~~W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g------~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~ 248 (297)
+++++|+.+... ... ...+..++.| |.+||+...+ .|++||+..+.+...+++|..... ....
T Consensus 77 ~~~~~Wr~~~~~~~~~-~~~~~~v~~~------G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~---~~~~ 146 (230)
T TIGR01640 77 LGSNSWRTIECSPPHH-PLKSRGVCIN------GVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD---SVDY 146 (230)
T ss_pred eCCCCccccccCCCCc-cccCCeEEEC------CEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc---cccc
Confidence 999999998753 111 1111366777 9999998632 599999999987732455542211 1235
Q ss_pred eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEE-CCCCceeecc
Q 035663 249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLD-LETEKWIMVN 295 (297)
Q Consensus 249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld-~~~~~W~~v~ 295 (297)
..|++.+|+|.++..... ...++||.|+ .+.++|++.-
T Consensus 147 ~~L~~~~G~L~~v~~~~~---------~~~~~IWvl~d~~~~~W~k~~ 185 (230)
T TIGR01640 147 LSLINYKGKLAVLKQKKD---------TNNFDLWVLNDAGKQEWSKLF 185 (230)
T ss_pred eEEEEECCEEEEEEecCC---------CCcEEEEEECCCCCCceeEEE
Confidence 689999999999887653 2349999995 4567898753
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=3e-09 Score=65.87 Aligned_cols=38 Identities=42% Similarity=0.729 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663 8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL 49 (297)
Q Consensus 8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~ 49 (297)
|.+||+|++..|++.| +..|+.+ ++.|||.|+.++.++
T Consensus 1 i~~LP~Eil~~If~~L-~~~dl~~---~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-DPRDLLR---LSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHH---HTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHHCCh
Confidence 7899999999999999 9999999 999999999999654
No 4
>PHA02713 hypothetical protein; Provisional
Probab=98.64 E-value=7.4e-06 Score=77.71 Aligned_cols=191 Identities=13% Similarity=0.152 Sum_probs=118.3
Q ss_pred ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC----CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE----TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~----~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
....||+.+++|..+. +|.. ...... ..+|-+..+-+.+. ...++.+||.+..|..+|+++..... .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~-r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~------~ 345 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH-IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR------F 345 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc-ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc------e
Confidence 3457999999998763 4432 222222 55776666433221 14688999999999999998744211 0
Q ss_pred EEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663 148 VITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------ 216 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------ 216 (297)
.+.+. ++. +.++++. ...+..|.+..++|+.+..++..+... .++.++ |++|+++..
T Consensus 346 ~~~~~----~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~------g~IYviGG~~~~~~~ 413 (557)
T PHA02713 346 SLAVI----DDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLD------QYIYIIGGRTEHIDY 413 (557)
T ss_pred eEEEE----CCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEEC------CEEEEEeCCCccccc
Confidence 11111 121 2222221 235788999999999988762111111 455667 999998631
Q ss_pred ------------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceee
Q 035663 217 ------------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCA 278 (297)
Q Consensus 217 ------------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~ 278 (297)
..+.+||+..+.|....+++.+ ......+..+|+|++++..... ....
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-------r~~~~~~~~~~~IYv~GG~~~~-------~~~~ 479 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-------TIRPGVVSHKDDIYVVCDIKDE-------KNVK 479 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCCCcc-------cccCcEEEECCEEEEEeCCCCC-------Cccc
Confidence 2478899999999753344431 2334578889999999765421 1122
Q ss_pred EEEEEEECCC-CceeecccC
Q 035663 279 FIVCKLDLET-EKWIMVNNI 297 (297)
Q Consensus 279 ~~V~~ld~~~-~~W~~v~~L 297 (297)
-.|.+.|.++ ++|..+.+|
T Consensus 480 ~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 480 TCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred eeEEEecCCCCCCeeEcccc
Confidence 3478889998 799988764
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=98.62 E-value=6.3e-06 Score=76.89 Aligned_cols=187 Identities=11% Similarity=0.099 Sum_probs=117.1
Q ss_pred ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEe
Q 035663 74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITS 151 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls 151 (297)
....||+.+++|..++ +|. +...... +.+|.+..+-+.+....+.-+||.+.+|..+|+++..... .++.+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~------~~~~~ 360 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN------PAVAS 360 (480)
T ss_pred eEEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc------cEEEE
Confidence 4556999999998774 332 2222222 6788887744333335677889999999999998754211 11111
Q ss_pred cCCCCCCEEEEEEeCC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 152 TSPLDPDCLVLASLYV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 152 ~~p~~~~~~Vv~~~~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
. ++. +.++++. ...+..|.+..++|+.++.+...+... .++.++ |++|+++ |..-.||+..+.
T Consensus 361 ~----~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~~~------~~IYv~G--G~~e~ydp~~~~ 426 (480)
T PHA02790 361 I----NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALVFG------RRLFLVG--RNAEFYCESSNT 426 (480)
T ss_pred E----CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEEEC------CEEEEEC--CceEEecCCCCc
Confidence 1 111 2222221 235678999999999987762111111 455667 9999997 457789999999
Q ss_pred CCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 229 APTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 229 ~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
|....+++.+ ......+-.+|+|++++..... . ..-.|...|.++++|.-++.
T Consensus 427 W~~~~~m~~~-------r~~~~~~v~~~~IYviGG~~~~-------~-~~~~ve~Yd~~~~~W~~~~~ 479 (480)
T PHA02790 427 WTLIDDPIYP-------RDNPELIIVDNKLLLIGGFYRG-------S-YIDTIEVYNNRTYSWNIWDG 479 (480)
T ss_pred EeEcCCCCCC-------ccccEEEEECCEEEEECCcCCC-------c-ccceEEEEECCCCeEEecCC
Confidence 9852234431 2345678889999999986532 1 11246677899999987763
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.53 E-value=2.4e-08 Score=62.08 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 7 ~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
.|++||+|++.+|+.+| +..|+++ ++.|||.|++++.+..
T Consensus 2 ~~~~LP~~il~~Il~~l-~~~~~~~---l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL-DPKDLLR---LSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHH---HCTT-HHHHHHHTTHH
T ss_pred CHHHCCHHHHHHHHHHC-cHHHHHH---HHHHhhHHHHHHcCCC
Confidence 46789999999999999 9999999 9999999999998765
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.42 E-value=1.2e-07 Score=56.70 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=33.6
Q ss_pred CcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 11 LPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 11 LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
||+|++..|+.+| +..|+.+ ++.|||.|+.++..+.
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~---~~~vc~~~~~~~~~~~ 36 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLR---LRKVSRRWRSLIDSHD 36 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHhcChh
Confidence 7999999999999 8899999 9999999999997654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.39 E-value=4.1e-05 Score=72.72 Aligned_cols=196 Identities=11% Similarity=0.042 Sum_probs=115.4
Q ss_pred ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCC-ce--eecC
Q 035663 74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQ-LQ--FLNG 145 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~-~~--~~~~ 145 (297)
....||+.++.|..++ +|. +...... +.+|-+..+-+.+.. ..+..+||-|.+|..+|+++.... .. .++.
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~-~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIK-NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred eEEEEECCCCeEeeCCCCcc-hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 3556899988887653 332 2222223 568877664333221 468899999999999998775421 11 1110
Q ss_pred ceEEEecCCCCCCEE-EEEE--------eCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC
Q 035663 146 LRVITSTSPLDPDCL-VLAS--------LYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC 216 (297)
Q Consensus 146 ~~~~ls~~p~~~~~~-Vv~~--------~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~ 216 (297)
.-.+++.......+. +... ......+..|++..++|+.+..+...+.. ..++.++ |++|+++..
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~------~~IYv~GG~ 472 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSHK------DDIYVVCDI 472 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEEEC------CEEEEEeCC
Confidence 111111100000000 0000 00024577899999999998876222111 1567777 999999642
Q ss_pred -------CcEEEEecCC-CCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCC
Q 035663 217 -------NFIFRIRFDH-PHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLET 288 (297)
Q Consensus 217 -------g~i~~~d~~~-~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~ 288 (297)
..+.+||+.. +.|....++|.+ ......+..+|+|++++.+... . .|-..|..+
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-------r~~~~~~~~~~~iyv~Gg~~~~---------~--~~e~yd~~~ 534 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELITTTESR-------LSALHTILHDNTIMMLHCYESY---------M--LQDTFNVYT 534 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEccccCcc-------cccceeEEECCEEEEEeeecce---------e--ehhhcCccc
Confidence 1367899998 789853345542 2456778889999999887642 1 355678888
Q ss_pred Cceeecc
Q 035663 289 EKWIMVN 295 (297)
Q Consensus 289 ~~W~~v~ 295 (297)
.+|..+.
T Consensus 535 ~~W~~~~ 541 (557)
T PHA02713 535 YEWNHIC 541 (557)
T ss_pred ccccchh
Confidence 9998765
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.30 E-value=0.00016 Score=68.51 Aligned_cols=189 Identities=12% Similarity=0.121 Sum_probs=113.0
Q ss_pred ceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCceE
Q 035663 74 SCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRV 148 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~ 148 (297)
....||+.+++|..++ +|. +.....+ +.+|-+...-+.+. ...+..+||-|++|..+|+++..... .+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~------~~ 384 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIY-PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN------PC 384 (534)
T ss_pred cEEEEeCCCCeeeECCCCCc-ccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc------ce
Confidence 4567999999997664 232 2222222 55776665333321 25688899999999998887643211 11
Q ss_pred EEecCCCCCCEEEEEEeC--C----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663 149 ITSTSPLDPDCLVLASLY--V----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------ 216 (297)
Q Consensus 149 ~ls~~p~~~~~~Vv~~~~--~----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------ 216 (297)
+... ++.+.+ +++ . ...+..|++..++|+.+...+..+... .++..+ |++|+++..
T Consensus 385 ~~~~----~~~iYv-~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 385 VVNV----NNLIYV-IGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYHD------GKIYVIGGISYIDNI 452 (534)
T ss_pred EEEE----CCEEEE-ECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEEC------CEEEEECCccCCCCC
Confidence 1111 222222 222 1 145788999999999987652221111 456667 999998642
Q ss_pred ---CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663 217 ---NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 217 ---g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~ 293 (297)
..+.+||+..+.|.....+|.+ .....++..+|+|++++..... ...-.|+.+|.++++|..
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFP-------RINASLCIFNNKIYVVGGDKYE--------YYINEIEVYDDKTNTWTL 517 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCcc-------cccceEEEECCEEEEEcCCcCC--------cccceeEEEeCCCCEEEe
Confidence 1388999999999852223321 1123445568999988765532 112257788999999998
Q ss_pred ccc
Q 035663 294 VNN 296 (297)
Q Consensus 294 v~~ 296 (297)
+.+
T Consensus 518 ~~~ 520 (534)
T PHA03098 518 FCK 520 (534)
T ss_pred cCC
Confidence 765
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.25 E-value=9.6e-05 Score=70.18 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=121.7
Q ss_pred cceEEEecCCCcEEecCCCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCCceeecCceE
Q 035663 73 QSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRV 148 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~ 148 (297)
+....||+..++|..+.--.......-+ +.+|.+..+-+.+.. ..+..++|-|.+|-..++...... . ..
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~-----~g 422 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-G-----HG 422 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-e-----eE
Confidence 3456799999998874311111222223 678888775444422 578899999999998888765321 1 01
Q ss_pred EEecCCCCCC-EEEEEEeCC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-C-----c
Q 035663 149 ITSTSPLDPD-CLVLASLYV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-N-----F 218 (297)
Q Consensus 149 ~ls~~p~~~~-~~Vv~~~~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-g-----~ 218 (297)
+... .+. |++=+..+. -..+..|.|..++|+.++.+.-.+... .++..+ |++|+++.. | .
T Consensus 423 v~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~~------~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 423 VAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVLN------GKIYVVGGFDGTSALSS 492 (571)
T ss_pred EEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEEC------CEEEEECCccCCCccce
Confidence 1111 122 221111111 246788999999999999871111111 567778 999999763 2 3
Q ss_pred EEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 219 IFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 219 i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
+-.+|+..+.|....+++. ......++-.+|+|++|+.+... .....+.+| |.++.+|.++..
T Consensus 493 VE~ydp~~~~W~~v~~m~~-------~rs~~g~~~~~~~ly~vGG~~~~------~~l~~ve~y--dp~~d~W~~~~~ 555 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPMTS-------PRSAVGVVVLGGKLYAVGGFDGN------NNLNTVECY--DPETDTWTEVTE 555 (571)
T ss_pred EEEEcCCCCceeEcccCcc-------ccccccEEEECCEEEEEecccCc------cccceeEEc--CCCCCceeeCCC
Confidence 7779999999975223333 23567888999999999996543 134556666 899999998764
No 11
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.20 E-value=8.2e-06 Score=62.09 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred cCCeEEEeccC-----CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEE
Q 035663 206 CKGYFYCLGSC-----NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFI 280 (297)
Q Consensus 206 ~~G~~Y~l~~~-----g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~ 280 (297)
++|.+|++... ..|++||+..+.+.. +..|... ........|++.+|+|.++...... ....++
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~-i~~P~~~---~~~~~~~~L~~~~G~L~~v~~~~~~-------~~~~~~ 72 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRF-IKLPEDP---YSSDCSSTLIEYKGKLALVSYNDQG-------EPDSID 72 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEE-EEeeeee---ccccCccEEEEeCCeEEEEEecCCC-------CcceEE
Confidence 34999999764 479999999998864 5555211 1134678999999999999887753 247899
Q ss_pred EEEE-ECCCCceeecc
Q 035663 281 VCKL-DLETEKWIMVN 295 (297)
Q Consensus 281 V~~l-d~~~~~W~~v~ 295 (297)
||-| |.++++|++..
T Consensus 73 iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKH 88 (129)
T ss_pred EEEeeccccceEEEEE
Confidence 9999 56678999763
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.15 E-value=0.00017 Score=68.54 Aligned_cols=190 Identities=19% Similarity=0.210 Sum_probs=122.7
Q ss_pred cceEEEecCCCcEEec-CCCCCCCCceEE-eeCCeEEEEeecCC-C---ccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663 73 QSCTFFNPKTKKFREI-PLPEVKGRWVSC-SSHGWLLTVSCLDE-T---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL 146 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~-s~~Gwll~~~~~~~-~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~ 146 (297)
+....||+.++.|..+ ++|.. .....+ .-+|.|..+-+.+. . ..+..+||-+.+|..+|++...+..- .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~----~ 375 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF----G 375 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcc-cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc----e
Confidence 4566899999988876 34432 222222 56777766544451 2 67899999999999999987653210 0
Q ss_pred eEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc-C----
Q 035663 147 RVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-C---- 216 (297)
Q Consensus 147 ~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~---- 216 (297)
.+++ ++++ .++.+. -..+..|.+..++|..+..+...+. .-.++.++ |++|++.. +
T Consensus 376 v~~l------~g~i-YavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~~------g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 376 VAVL------DGKL-YAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVLG------GKLYIIGGGDGSSN 441 (571)
T ss_pred eEEE------CCEE-EEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEEC------CEEEEEcCcCCCcc
Confidence 1111 2222 222221 2467889999999999987611111 11456677 99999975 1
Q ss_pred --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663 217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV 294 (297)
Q Consensus 217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v 294 (297)
..+..||+..+.|....+|+.+ .....+.-.+|.|+.|+.+... ...-.|-+.|.++.+|..+
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~-------R~~~g~a~~~~~iYvvGG~~~~--------~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTR-------RSGFGVAVLNGKIYVVGGFDGT--------SALSSVERYDPETNQWTMV 506 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccc-------cccceEEEECCEEEEECCccCC--------CccceEEEEcCCCCceeEc
Confidence 2688899999999863344441 1233477788999999988752 1222288899999999988
Q ss_pred cc
Q 035663 295 NN 296 (297)
Q Consensus 295 ~~ 296 (297)
..
T Consensus 507 ~~ 508 (571)
T KOG4441|consen 507 AP 508 (571)
T ss_pred cc
Confidence 64
No 13
>PLN02153 epithiospecifier protein
Probab=98.06 E-value=0.0013 Score=58.72 Aligned_cols=201 Identities=13% Similarity=0.067 Sum_probs=110.5
Q ss_pred ceEEEecCCCcEEecCC-CCCCCC---ceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCC--CCceee
Q 035663 74 SCTFFNPKTKKFREIPL-PEVKGR---WVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPG--TQLQFL 143 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-p~~~~~---~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~--~~~~~~ 143 (297)
....||+.+++|..++. +..+.. ...+ +.++-+.+.-+.+.. ..++.+||-|.+|..+|++... +..+.
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~- 129 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART- 129 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce-
Confidence 46679999999987642 111111 1222 456666553222222 4789999999999988765211 10000
Q ss_pred cCceEEEecCCCCCCEEEEEEeCC-----------CCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeE
Q 035663 144 NGLRVITSTSPLDPDCLVLASLYV-----------SSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYF 210 (297)
Q Consensus 144 ~~~~~~ls~~p~~~~~~Vv~~~~~-----------~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~ 210 (297)
...+... ++.+ .++.+. ...+..|++..++|+.++.+ .......-.++.++ |++
T Consensus 130 --~~~~~~~----~~~i-yv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~------~~i 196 (341)
T PLN02153 130 --FHSMASD----ENHV-YVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ------GKI 196 (341)
T ss_pred --eeEEEEE----CCEE-EEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC------CeE
Confidence 0011111 1111 111111 13577899999999998764 11111111455667 999
Q ss_pred EEecc--------------CCcEEEEecCCCCCCcee---cCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC-CCC
Q 035663 211 YCLGS--------------CNFIFRIRFDHPHAPTAE---AMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK-SYP 272 (297)
Q Consensus 211 Y~l~~--------------~g~i~~~d~~~~~~~~~~---~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~-~~~ 272 (297)
|++.. ...+.+||+....|.... .+|.+ ....-.+-.+|+|++++-...... .+.
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~-------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA-------RSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC-------cceeeeEEECCEEEEECcccCCcccccc
Confidence 98732 136899999999997511 12321 122334556789999987642100 000
Q ss_pred CCceeeEEEEEEECCCCceeecc
Q 035663 273 CELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 273 ~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
......-.||.+|.++++|.++.
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccccccccEEEEEcCccEEEecc
Confidence 00112237999999999999875
No 14
>PLN02193 nitrile-specifier protein
Probab=97.90 E-value=0.0029 Score=58.96 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=112.2
Q ss_pred ceEEEecCCCcEEecCC----CCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecC
Q 035663 74 SCTFFNPKTKKFREIPL----PEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNG 145 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~~----p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~ 145 (297)
....||+.+.+|..++. |......... ..++-|.+.-+.+. ...++.+||-|.+|.++++....+..+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~--- 270 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS--- 270 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc---
Confidence 46679999999987542 2211111122 45665555322221 2578999999999998877532111110
Q ss_pred ceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc-C-
Q 035663 146 LRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS-C- 216 (297)
Q Consensus 146 ~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~- 216 (297)
...+... ++.+.+ +.+ ....+..|.+.+++|+.+... .......-.++.++ |++|++.. +
T Consensus 271 ~h~~~~~----~~~iYv-~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~------gkiyviGG~~g 339 (470)
T PLN02193 271 FHSMAAD----EENVYV-FGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ------GKVWVVYGFNG 339 (470)
T ss_pred ceEEEEE----CCEEEE-ECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC------CcEEEEECCCC
Confidence 0111111 222222 221 124577899999999988653 11101111345566 99998853 1
Q ss_pred ---CcEEEEecCCCCCCceecCCC-CCCccccCCceeEEeeeCCcEEEEEEEccCCC-CCCCCceeeEEEEEEECCCCce
Q 035663 217 ---NFIFRIRFDHPHAPTAEAMPF-KPHEYCCNARYNYLVELNSDLFIVSRFLIPHK-SYPCELTCAFIVCKLDLETEKW 291 (297)
Q Consensus 217 ---g~i~~~d~~~~~~~~~~~~p~-~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~-~~~~~~~~~~~V~~ld~~~~~W 291 (297)
..+.+||+....|.....+.. +.+ ......+..+++|+++.-...... .+.......=.+|.+|.++++|
T Consensus 340 ~~~~dv~~yD~~t~~W~~~~~~g~~P~~-----R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 340 CEVDDVHYYDPVQDKWTQVETFGVRPSE-----RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CccCceEEEECCCCEEEEeccCCCCCCC-----cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 379999999999975211211 111 122334566788998887653210 0000011223589999999999
Q ss_pred eeccc
Q 035663 292 IMVNN 296 (297)
Q Consensus 292 ~~v~~ 296 (297)
.++..
T Consensus 415 ~~~~~ 419 (470)
T PLN02193 415 ERLDK 419 (470)
T ss_pred EEccc
Confidence 98864
No 15
>PHA03098 kelch-like protein; Provisional
Probab=97.89 E-value=0.0018 Score=61.43 Aligned_cols=151 Identities=11% Similarity=0.169 Sum_probs=92.8
Q ss_pred ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCccc
Q 035663 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYI 190 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~ 190 (297)
..++.+||.|++|..+|+++..... ..+.+. ++.+ .++++. ...+..|++.+++|+.....+..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~------~~~~~~----~~~l-yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~ 379 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN------PGVTVF----NNRI-YVIGGIYNSISLNTVESWKPGESKWREEPPLIFP 379 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc------ceEEEE----CCEE-EEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC
Confidence 4789999999999999987643211 011111 2222 222221 23567899999999988765221
Q ss_pred ccCCcCeEEeCCccccCCeEEEeccC-------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEE
Q 035663 191 RFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSR 263 (297)
Q Consensus 191 ~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~ 263 (297)
+... ..+..+ |++|+++.. ..+..||+..+.|....++|.+. .....+..+|+|++++.
T Consensus 380 r~~~-~~~~~~------~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG 445 (534)
T PHA03098 380 RYNP-CVVNVN------NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-------YGGCAIYHDGKIYVIGG 445 (534)
T ss_pred Cccc-eEEEEC------CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-------cCceEEEECCEEEEECC
Confidence 1111 345566 999998651 25889999999997533344321 12234567899998886
Q ss_pred EccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 264 FLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 264 ~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
...... ...--.++..|.++++|.++..
T Consensus 446 ~~~~~~-----~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 446 ISYIDN-----IKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred ccCCCC-----CcccceEEEecCCCCceeeCCC
Confidence 543210 0111238889999999998864
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.76 E-value=0.02 Score=51.07 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=66.6
Q ss_pred CeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-------CcEEEEecC--CCCCCceecCCCCC
Q 035663 169 SKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFRIRFD--HPHAPTAEAMPFKP 239 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~~d~~--~~~~~~~~~~p~~~ 239 (297)
..+..|++..++|+.++.++........++.++ |++|++.-. ..+..+|++ ...|....++|.+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~------~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r 241 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKG------NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK 241 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEEC------CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence 468899999999999876522111111456667 999998531 235566654 44787533444311
Q ss_pred CccccCCceeEEeeeCCcEEEEEEEccCCC-------C-C--C-CCceeeEEEEEEECCCCceeecccC
Q 035663 240 HEYCCNARYNYLVELNSDLFIVSRFLIPHK-------S-Y--P-CELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 240 ~~~~~~~~~~~LVes~G~LllV~~~~~~~~-------~-~--~-~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
............+..+|+|++++-...... . + . .......++|. .++.+|+++..|
T Consensus 242 ~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~l 308 (346)
T TIGR03547 242 SSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA--LDNGKWSKVGKL 308 (346)
T ss_pred CCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE--ecCCcccccCCC
Confidence 000001123346778999999987642100 0 0 0 00112355554 456789887654
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=97.57 E-value=0.0041 Score=58.15 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC--CCCeEEEEecCCCceEeeccCcccccC
Q 035663 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY--VSSKLAFCRPGDRNWTSIVHDQYIRFT 193 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~--~~~~l~~~~~g~~~W~~~~~~~~~~~~ 193 (297)
..+..+||.+++|.++|+++..... ..+.+. ++++ .++++ ....+..|.+..++|..++.+...+..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~------~~~v~~----~~~i-YviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~ 355 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY------ASGVPA----NNKL-YVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN 355 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc------ceEEEE----CCEE-EEECCcCCCCceEEEECCCCeEEECCCCCCCCcc
Confidence 4678899999999999988654311 111111 2222 22222 124577899999999998876211111
Q ss_pred CcCeEEeCCccccCCeEEEeccC----CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC
Q 035663 194 NTSAHFYDGRNCCKGYFYCLGSC----NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK 269 (297)
Q Consensus 194 ~~d~v~~~~~~~~~G~~Y~l~~~----g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~ 269 (297)
-.++.++ |++|+++.. ..+..||+..+.|....+++.+. .....+..+|+|++++..
T Consensus 356 -~~~~~~~------g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 356 -PAVASIN------NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred -cEEEEEC------CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEECCEEEEECCc-----
Confidence 1455667 999999652 24778999999997523344321 223456778999988621
Q ss_pred CCCCCceeeEEEEEEECCCCceeecccC
Q 035663 270 SYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 270 ~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
.. ..|.++++|+.+.++
T Consensus 417 ---------~e--~ydp~~~~W~~~~~m 433 (480)
T PHA02790 417 ---------AE--FYCESSNTWTLIDDP 433 (480)
T ss_pred ---------eE--EecCCCCcEeEcCCC
Confidence 11 235567778776653
No 18
>PLN02153 epithiospecifier protein
Probab=97.55 E-value=0.034 Score=49.54 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=88.9
Q ss_pred ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccC---
Q 035663 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHD--- 187 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~--- 187 (297)
..++.+||.+.+|..+|+....+..... ...+.+. ++.+. ++.+. ...+..|.+..++|+.++.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~--~~~~~~~----~~~iy-v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCL--GVRMVAV----GTKLY-IFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccC--ceEEEEE----CCEEE-EECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence 4789999999999988875422111000 0011111 22222 22221 24678899999999987642
Q ss_pred --cccccCCcCeEEeCCccccCCeEEEeccC------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEee
Q 035663 188 --QYIRFTNTSAHFYDGRNCCKGYFYCLGSC------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVE 253 (297)
Q Consensus 188 --~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVe 253 (297)
+..+. .-.++.++ +++|++.-. ..+.+||+..+.|.....+..+.. .......+.
T Consensus 123 ~~p~~R~-~~~~~~~~------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~----~r~~~~~~~ 191 (341)
T PLN02153 123 GGPEART-FHSMASDE------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE----KRGGAGFAV 191 (341)
T ss_pred CCCCCce-eeEEEEEC------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC----CCCcceEEE
Confidence 11111 11445566 999998541 147889999998975111111011 112233556
Q ss_pred eCCcEEEEEEEccCC--CCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 254 LNSDLFIVSRFLIPH--KSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 254 s~G~LllV~~~~~~~--~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
.+|+++++.-..... +... ....-.|+.+|.++.+|++++.
T Consensus 192 ~~~~iyv~GG~~~~~~~gG~~--~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 192 VQGKIWVVYGFATSILPGGKS--DYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred ECCeEEEEeccccccccCCcc--ceecCceEEEEcCCCcEEeccc
Confidence 789999887553210 0000 1112357888999999999863
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.51 E-value=0.021 Score=51.69 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=71.3
Q ss_pred CeEEEEecCCCceEeeccC-cccccCCcCeEE-eCCccccCCeEEEeccC------------------------------
Q 035663 169 SKLAFCRPGDRNWTSIVHD-QYIRFTNTSAHF-YDGRNCCKGYFYCLGSC------------------------------ 216 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v~-~~~~~~~~G~~Y~l~~~------------------------------ 216 (297)
..+..|++..++|+.+... +...... ..+. .+ |++|++...
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~-~~~~~~~------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGH-VAVSLHN------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccce-EEEEeeC------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 3567899999999998743 1111111 2222 56 999998542
Q ss_pred ----------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC
Q 035663 217 ----------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL 286 (297)
Q Consensus 217 ----------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~ 286 (297)
..+.+||+..+.|...-++|.+ .......+..+|+|++++-.... + .....+.+|++|.
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~------~~~~~a~v~~~~~iYv~GG~~~~-~----~~~~~~~~~~~~~ 247 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL------GTAGSAVVIKGNKLWLINGEIKP-G----LRTDAVKQGKFTG 247 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCC------CCCcceEEEECCEEEEEeeeECC-C----cCChhheEEEecC
Confidence 2588999999999852234431 11233567778999999976432 1 1345566777888
Q ss_pred CCCceeecccC
Q 035663 287 ETEKWIMVNNI 297 (297)
Q Consensus 287 ~~~~W~~v~~L 297 (297)
++.+|.++..+
T Consensus 248 ~~~~W~~~~~~ 258 (376)
T PRK14131 248 NNLKWQKLPDL 258 (376)
T ss_pred CCcceeecCCC
Confidence 88999988653
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.42 E-value=0.016 Score=51.67 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=94.7
Q ss_pred eeCCeEEEEeecCCCccEEEEcC--CCCCeecCCCCCC-CCCceeecCceEEEecCCCCCCEEEEEEeCC----------
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHP--FTRSQVKLPPPPP-GTQLQFLNGLRVITSTSPLDPDCLVLASLYV---------- 167 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP--~T~~~i~LP~~~~-~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~---------- 167 (297)
..++-|...-+. ....++.+|+ -+.+|.++|+++. ... . ..+.+. ++. +.++.+.
T Consensus 15 ~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~-~-----~~~~~~----~~~-iYv~GG~~~~~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRN-Q-----AVAAAI----DGK-LYVFGGIGKANSEGSPQ 82 (346)
T ss_pred EECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcc-c-----ceEEEE----CCE-EEEEeCCCCCCCCCcce
Confidence 345545442211 1245677774 6788999998763 221 1 011111 111 2222221
Q ss_pred -CCeEEEEecCCCceEeeccC-cccccCCcCeE-EeCCccccCCeEEEeccC----------------------------
Q 035663 168 -SSKLAFCRPGDRNWTSIVHD-QYIRFTNTSAH-FYDGRNCCKGYFYCLGSC---------------------------- 216 (297)
Q Consensus 168 -~~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v-~~~~~~~~~G~~Y~l~~~---------------------------- 216 (297)
...+..|.+..++|+.+... +..+... ..+ ..+ |++|++.-.
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~-~~~~~~~------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTRSPVGLLGA-SGFSLHN------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred ecccEEEEECCCCEEecCCCCCCCcccce-eEEEEeC------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 13567899999999998642 1111111 122 456 999998531
Q ss_pred ------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEE
Q 035663 217 ------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKL 284 (297)
Q Consensus 217 ------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~l 284 (297)
..+.+||+..+.|...-++|.. . ....-.+..+|+|++++-.... . .....+.+|.+
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~-~-----r~~~~~~~~~~~iyv~GG~~~~--~---~~~~~~~~y~~ 224 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL-G-----TAGSAIVHKGNKLLLINGEIKP--G---LRTAEVKQYLF 224 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCCC-c-----CCCceEEEECCEEEEEeeeeCC--C---ccchheEEEEe
Confidence 3588999999999852234431 1 1234566778999999876532 0 12345666777
Q ss_pred ECCCCceeecccC
Q 035663 285 DLETEKWIMVNNI 297 (297)
Q Consensus 285 d~~~~~W~~v~~L 297 (297)
|.++.+|.++..+
T Consensus 225 ~~~~~~W~~~~~m 237 (346)
T TIGR03547 225 TGGKLEWNKLPPL 237 (346)
T ss_pred cCCCceeeecCCC
Confidence 7788899987653
No 21
>PLN02193 nitrile-specifier protein
Probab=97.36 E-value=0.061 Score=50.21 Aligned_cols=154 Identities=14% Similarity=0.037 Sum_probs=88.6
Q ss_pred ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC---
Q 035663 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD--- 187 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~--- 187 (297)
..++.+||-+.+|..+|+....+..+.. ...+.+. ++.+.+ +.+ ....+..|.+..++|+.+..+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~--~~~~v~~----~~~lYv-fGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCL--GVRMVSI----GSTLYV-FGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCccc--ceEEEEE----CCEEEE-ECCCCCCCCCccEEEEECCCCEEEEcCcCCCC
Confidence 3588999999999887754322111000 0011111 222222 221 124678899999999987653
Q ss_pred cccccCCcCeEEeCCccccCCeEEEeccC------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEE
Q 035663 188 QYIRFTNTSAHFYDGRNCCKGYFYCLGSC------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIV 261 (297)
Q Consensus 188 ~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV 261 (297)
+..+.. -.++..+ +++|++.-. ..+.+||+....|.. ++.|...+. .....-++..+|+++++
T Consensus 266 P~~R~~-h~~~~~~------~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~---~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 266 PTPRSF-HSMAADE------ENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFS---IRGGAGLEVVQGKVWVV 334 (470)
T ss_pred CCCccc-eEEEEEC------CEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCC---CCCCcEEEEECCcEEEE
Confidence 111111 1445566 999998642 258899999998874 332221110 11223445568999988
Q ss_pred EEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 262 SRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
.-.... ..-.|+.+|.++++|.++..
T Consensus 335 GG~~g~---------~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 335 YGFNGC---------EVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred ECCCCC---------ccCceEEEECCCCEEEEecc
Confidence 765321 12457888999999998853
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.35 E-value=0.088 Score=47.63 Aligned_cols=91 Identities=7% Similarity=0.091 Sum_probs=52.4
Q ss_pred CeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-------CcEEE--EecCCCCCCceecCCCCC
Q 035663 169 SKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC-------NFIFR--IRFDHPHAPTAEAMPFKP 239 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~-------g~i~~--~d~~~~~~~~~~~~p~~~ 239 (297)
..+..|++..+.|+.++..+........++.++ +++|++... ..++. +|+....|.....+|.+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~------~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKG------NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEEC------CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence 468899999999999875532211122556667 999998631 13444 455667787523344321
Q ss_pred Ccccc-CCceeEEeeeCCcEEEEEEEc
Q 035663 240 HEYCC-NARYNYLVELNSDLFIVSRFL 265 (297)
Q Consensus 240 ~~~~~-~~~~~~LVes~G~LllV~~~~ 265 (297)
..... .......+..+|+|++++-..
T Consensus 263 ~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 263 GGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred cCCcCCccceEeceeECCEEEEeeccC
Confidence 10000 011223456789999888654
No 23
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.97 E-value=0.0088 Score=47.37 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred cCCeEEEeccC--C----cEEEEecCCCCCCceecCCCCCCccccCCceeEE-eeeCCcEEEEEEEccCCCCCCCCceee
Q 035663 206 CKGYFYCLGSC--N----FIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYL-VELNSDLFIVSRFLIPHKSYPCELTCA 278 (297)
Q Consensus 206 ~~G~~Y~l~~~--g----~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~L-Ves~G~LllV~~~~~~~~~~~~~~~~~ 278 (297)
++|.+||++.. + .|++||+..+.....+++|.... .......| +-.+|.|.++.... .+..
T Consensus 4 vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~---~~~~~~~L~~v~~~~L~~~~~~~---------~~~~ 71 (164)
T PF07734_consen 4 VNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND---DDDDSVSLSVVRGDCLCVLYQCD---------ETSK 71 (164)
T ss_pred ECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC---ccCCEEEEEEecCCEEEEEEecc---------CCcc
Confidence 34999999863 2 49999999998843366665322 12345666 34467788886532 2456
Q ss_pred EEEEEEEC---CCCceeec
Q 035663 279 FIVCKLDL---ETEKWIMV 294 (297)
Q Consensus 279 ~~V~~ld~---~~~~W~~v 294 (297)
+.||.+++ ....|+|+
T Consensus 72 ~~IWvm~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 72 IEIWVMKKYGYGKESWTKL 90 (164)
T ss_pred EEEEEEeeeccCcceEEEE
Confidence 99999974 25789886
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00032 Score=59.77 Aligned_cols=41 Identities=34% Similarity=0.622 Sum_probs=37.7
Q ss_pred CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
..|-+||+|++..|+.-| +.+++++ +..|||.|+.+.++..
T Consensus 96 v~~~slpDEill~IFs~L-~kk~LL~---~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCL-CKKELLK---VSGVCKRFYRLASDES 136 (419)
T ss_pred CCcccCCHHHHHHHHHhc-cHHHHHH---HHHHHHHHhhcccccc
Confidence 349999999999999999 9999999 9999999999987654
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.94 E-value=0.19 Score=44.31 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=94.6
Q ss_pred ceEEEecCCCcE----Eec-CCCCCCCCceEE-eeCCeEEEEeecC---CCccEEEEcCCCCCeecCCCCCC-CCCceee
Q 035663 74 SCTFFNPKTKKF----REI-PLPEVKGRWVSC-SSHGWLLTVSCLD---ETQNMFLLHPFTRSQVKLPPPPP-GTQLQFL 143 (297)
Q Consensus 74 ~~~~~~~~~~~~----~~~-~~p~~~~~~~~~-s~~Gwll~~~~~~---~~~~~~l~NP~T~~~i~LP~~~~-~~~~~~~ 143 (297)
....||+.+++| ..+ ++|.. ...... ..+|-+...-+.. ....++.+||-|.+|..+|+.+. ....
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~--- 164 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ--- 164 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc---
Confidence 455688888776 222 23331 112222 4567665532221 12578999999999999987542 2111
Q ss_pred cCceEEEecCCCCCCEEEEEEeCCC----CeEEEEecCCCceEeeccCc---cc--ccCCcCeEEeCCccccCCeEEEec
Q 035663 144 NGLRVITSTSPLDPDCLVLASLYVS----SKLAFCRPGDRNWTSIVHDQ---YI--RFTNTSAHFYDGRNCCKGYFYCLG 214 (297)
Q Consensus 144 ~~~~~~ls~~p~~~~~~Vv~~~~~~----~~l~~~~~g~~~W~~~~~~~---~~--~~~~~d~v~~~~~~~~~G~~Y~l~ 214 (297)
.++.+. ++. +.++.+.+ ..+..|++..++|+.+..+. .. ......++..+ |++|++.
T Consensus 165 ---~~~~~~----~~~-iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~------~~iyv~G 230 (323)
T TIGR03548 165 ---PVCVKL----QNE-LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE------SLLLCIG 230 (323)
T ss_pred ---ceEEEE----CCE-EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC------CEEEEEC
Confidence 111111 122 22222211 23568999999999987641 00 00111233445 8899875
Q ss_pred cC--------------------------------------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCC
Q 035663 215 SC--------------------------------------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNS 256 (297)
Q Consensus 215 ~~--------------------------------------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G 256 (297)
.. ..+.+||+..+.|...-.+|.. ......++..+|
T Consensus 231 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------~r~~~~~~~~~~ 304 (323)
T TIGR03548 231 GFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF------ARCGAALLLTGN 304 (323)
T ss_pred CcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc------ccCchheEEECC
Confidence 31 2589999999999752223321 123345788899
Q ss_pred cEEEEEEEcc
Q 035663 257 DLFIVSRFLI 266 (297)
Q Consensus 257 ~LllV~~~~~ 266 (297)
+|++++-..+
T Consensus 305 ~iyv~GG~~~ 314 (323)
T TIGR03548 305 NIFSINGELK 314 (323)
T ss_pred EEEEEecccc
Confidence 9999987654
No 26
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.87 E-value=0.078 Score=46.83 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=65.4
Q ss_pred eEEEEecCCCce----EeeccCcccccCCcCeEEeCCccccCCeEEEeccC------CcEEEEecCCCCCCceecCCCCC
Q 035663 170 KLAFCRPGDRNW----TSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------NFIFRIRFDHPHAPTAEAMPFKP 239 (297)
Q Consensus 170 ~l~~~~~g~~~W----~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------g~i~~~d~~~~~~~~~~~~p~~~ 239 (297)
.+..|......| +.++..+..+.. -..+.++ |++|++... ..+.+||+..+.|....++|...
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~~------~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFEN-GSACYKD------GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEEC------CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 456677777777 444443111111 1455667 999998642 26999999999997522344311
Q ss_pred CccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 240 HEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 240 ~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
......+..+|+|++++-.... ....+++.|.++++|.++..
T Consensus 162 ------r~~~~~~~~~~~iYv~GG~~~~---------~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 162 ------RVQPVCVKLQNELYVFGGGSNI---------AYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred ------CCcceEEEECCEEEEEcCCCCc---------cccceEEEecCCCeeEECCC
Confidence 1223446778999988865321 12346788999999998864
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.51 E-value=1.5 Score=39.46 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCeEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc-----C-------CcEEEEecCCCCCCcee
Q 035663 168 SSKLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS-----C-------NFIFRIRFDHPHAPTAE 233 (297)
Q Consensus 168 ~~~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-----~-------g~i~~~d~~~~~~~~~~ 233 (297)
.+.|.+|.....+|+.+..+ +..+... .+|.... |.+|.... + ..++.||+....|.. +
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRssh-q~va~~s-----~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq-l 169 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSH-QAVAVPS-----NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ-L 169 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccc-eeEEecc-----CeEEEeccccCCcchhhhhhhhheeeeeeccchhee-e
Confidence 35678899999999998876 2222222 3333321 55555431 1 269999999998875 4
Q ss_pred cCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 234 AMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 234 ~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
..+.... ..+...+|.+--+|++.+-+.+..+. ..--=+||-+|.++-+|.+++
T Consensus 170 ~~~g~PS----~RSGHRMvawK~~lilFGGFhd~nr~----y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 170 EFGGGPS----PRSGHRMVAWKRQLILFGGFHDSNRD----YIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred ccCCCCC----CCccceeEEeeeeEEEEcceecCCCc----eEEeeeeEEEeccceeeeecc
Confidence 4433111 23456788899999999988765322 223346777777788998875
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=94.05 E-value=5 Score=37.67 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=87.0
Q ss_pred ccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccC---
Q 035663 116 QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHD--- 187 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~--- 187 (297)
..++.+|+.|++|..+.+....+..+. .+.++.. ++++++.-.. ..+.+++|+..+..|..+...
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~--~Hs~~~~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRA--GHSATVV-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcc--cceEEEE-----CCEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence 489999999999987766543211110 0011111 2333332211 135788999999999998865
Q ss_pred cccccCCcCeEEeCCccccCCeEEEecc-C------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEE
Q 035663 188 QYIRFTNTSAHFYDGRNCCKGYFYCLGS-C------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFI 260 (297)
Q Consensus 188 ~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~Lll 260 (297)
+..+... .++..+ ++++.+.. + +.++.+|+....|.. .+.-...+. ......++-++..+++
T Consensus 212 P~pR~gH-~~~~~~------~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~-~~~~g~~p~---~R~~h~~~~~~~~~~l 280 (482)
T KOG0379|consen 212 PSPRYGH-AMVVVG------NKLLVFGGGDDGDVYLNDVHILDLSTWEWKL-LPTGGDLPS---PRSGHSLTVSGDHLLL 280 (482)
T ss_pred CCCCCCc-eEEEEC------CeEEEEeccccCCceecceEeeecccceeee-ccccCCCCC---CcceeeeEEECCEEEE
Confidence 1111111 455565 67666543 1 379999999977763 111110110 1234556644444666
Q ss_pred EEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 261 VSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 261 V~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
++-.... ....--++|.||.++..|.+++.
T Consensus 281 ~gG~~~~------~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 281 FGGGTDP------KQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred EcCCccc------ccccccccccccccccceeeeec
Confidence 6544431 01145567888888888988764
No 29
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.87 E-value=0.21 Score=30.04 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=35.3
Q ss_pred eeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663 248 YNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 248 ~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
....+..+|+|++++-.... ....-.|+++|.++++|+++.+|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGN-------NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp SEEEEEETTEEEEEEEBEST-------SSBEEEEEEEETTTTEEEEEEEE
T ss_pred cCEEEEECCEEEEEeeeccc-------CceeeeEEEEeCCCCEEEEcCCC
Confidence 35677888999999988862 46778899999999999998764
No 30
>PF13964 Kelch_6: Kelch motif
Probab=92.78 E-value=0.2 Score=30.71 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=33.3
Q ss_pred eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663 249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
...|..+|+|++++-.... ....-.|+++|.++++|+++.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNS-------GKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CEEEEECCEEEEECCCCCC-------CCccccEEEEcCCCCcEEECCCC
Confidence 4567888999999877752 34567889999999999998764
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.45 E-value=0.06 Score=46.37 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHhhc----CCchhhhccccccccChhHHHhhhhhh
Q 035663 8 WSSLPDELLSVIIQKL----IDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 8 ws~LP~dll~~I~~rL----~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
.+.||+|+|..|+++. -+..++-+ +.+|||.|+-++.++.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~---~s~vCr~F~~~~R~~~ 150 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQ---LSLVCRGFYKCARDPE 150 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHH---hHhhHHHHHHHHcChH
Confidence 4679999999999876 15688999 9999999999998775
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=91.88 E-value=1.3 Score=37.58 Aligned_cols=108 Identities=13% Similarity=0.230 Sum_probs=64.6
Q ss_pred CeEEEEecCCCceEeeccC----cccccCCcCeEEeCCccccCCeEEEec-------------c--CCcEEEEecCCCCC
Q 035663 169 SKLAFCRPGDRNWTSIVHD----QYIRFTNTSAHFYDGRNCCKGYFYCLG-------------S--CNFIFRIRFDHPHA 229 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~----~~~~~~~~d~v~~~~~~~~~G~~Y~l~-------------~--~g~i~~~d~~~~~~ 229 (297)
..+.........|+.+... .+..|- ....++ |.+|... . ...|.++|+..+.|
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH--~a~~~~------~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW 228 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFH--TASVID------GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAW 228 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhh--hhhhcc------ceEEEeccccccCCCccchhhhhcceeEEEecccccc
Confidence 4556677778899987753 111000 233334 6666553 1 23699999999999
Q ss_pred CceecCCCCC-CccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 230 PTAEAMPFKP-HEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 230 ~~~~~~p~~~-~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
.. .+ +.++ ++ +.++..-.-.+|++++.+-+...- ...--++|..|..+..|..++
T Consensus 229 ~r-~p-~~~~~P~---GRRSHS~fvYng~~Y~FGGYng~l------n~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 229 TR-TP-ENTMKPG---GRRSHSTFVYNGKMYMFGGYNGTL------NVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred cc-CC-CCCcCCC---cccccceEEEcceEEEecccchhh------hhhhcceeecccccchheeee
Confidence 75 21 1111 11 234455557899999999887530 112246788888888887654
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=91.43 E-value=3.7 Score=38.51 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=69.8
Q ss_pred CeEEEEecCCCceEeeccC-c--ccccCCcCeEEeCCccccCCeEEEecc-------CCcEEEEecCCCCCCc-eecCCC
Q 035663 169 SKLAFCRPGDRNWTSIVHD-Q--YIRFTNTSAHFYDGRNCCKGYFYCLGS-------CNFIFRIRFDHPHAPT-AEAMPF 237 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~-~--~~~~~~~d~v~~~~~~~~~G~~Y~l~~-------~g~i~~~d~~~~~~~~-~~~~p~ 237 (297)
..+..|+..+.+|+.+... . -.+... .++.++ .++|+..- ...++++|+....|.. .+.-+.
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~H-s~~~~g------~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGH-SATVVG------TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccc-eEEEEC------CEEEEECCccCcccceeeeeeeccccccceecccCCCC
Confidence 4788999999999988754 1 011100 344444 67777643 2379999999999975 111111
Q ss_pred CCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 238 KPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 238 ~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
|.+ ....-.+..+++++++.-.... ...-=++|.||..+.+|.++.
T Consensus 212 P~p-----R~gH~~~~~~~~~~v~gG~~~~-------~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 212 PSP-----RYGHAMVVVGNKLLVFGGGDDG-------DVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred CCC-----CCCceEEEECCeEEEEeccccC-------CceecceEeeecccceeeecc
Confidence 111 2345667777888888877632 355678899999889998653
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=90.75 E-value=0.66 Score=28.28 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=31.9
Q ss_pred eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
...+..+|+|++++-+... ......-+|+.+|.++.+|.++..
T Consensus 5 hs~~~~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccC-----CCCcccceeEEEECCCCEEeecCC
Confidence 3455678999999988211 014567789999999999999875
No 35
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=90.66 E-value=0.64 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=18.4
Q ss_pred CeEEeCCccccCCeEEEeccCCcEEEEecC
Q 035663 196 SAHFYDGRNCCKGYFYCLGSCNFIFRIRFD 225 (297)
Q Consensus 196 d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~ 225 (297)
.+++.+ |++|+.+.+|.+++||..
T Consensus 16 ~~~v~~------g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAG------GRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECT------SEEEEE-TTSEEEEEETT
T ss_pred CCEEEC------CEEEEEcCCCEEEEEeCC
Confidence 556666 999999999999999975
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.12 E-value=11 Score=32.31 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=76.7
Q ss_pred ceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCC-CceeecCceEEEecCCCCCCEEEEEEeC-CCCeEEE
Q 035663 97 WVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGT-QLQFLNGLRVITSTSPLDPDCLVLASLY-VSSKLAF 173 (297)
Q Consensus 97 ~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~-~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-~~~~l~~ 173 (297)
.-+| +.+|=|-+.. -..+.+..+||+++..-.+|.+.... ..+ .++.||-.. +.+.. ....+..
T Consensus 192 yGi~atpdGsvwyas--lagnaiaridp~~~~aev~p~P~~~~~gsR-------riwsdpig~----~wittwg~g~l~r 258 (353)
T COG4257 192 YGICATPDGSVWYAS--LAGNAIARIDPFAGHAEVVPQPNALKAGSR-------RIWSDPIGR----AWITTWGTGSLHR 258 (353)
T ss_pred cceEECCCCcEEEEe--ccccceEEcccccCCcceecCCCccccccc-------ccccCccCc----EEEeccCCceeeE
Confidence 3566 7788666621 12467889999999766666655421 111 123344321 22222 2467788
Q ss_pred EecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc-CCcEEEEecCCCCCCceecCCCCCCcc---ccCCcee
Q 035663 174 CRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-CNFIFRIRFDHPHAPTAEAMPFKPHEY---CCNARYN 249 (297)
Q Consensus 174 ~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~~~~~~---~~~~~~~ 249 (297)
|++.+.+|...+-+...... +.++-+ -+|+++.-+- .|.|..||.....+.. .+.|.+..+- .......
T Consensus 259 fdPs~~sW~eypLPgs~arp--ys~rVD----~~grVW~sea~agai~rfdpeta~ftv-~p~pr~n~gn~ql~gr~ge~ 331 (353)
T COG4257 259 FDPSVTSWIEYPLPGSKARP--YSMRVD----RHGRVWLSEADAGAIGRFDPETARFTV-LPIPRPNSGNIQLDGRPGEL 331 (353)
T ss_pred eCcccccceeeeCCCCCCCc--ceeeec----cCCcEEeeccccCceeecCcccceEEE-ecCCCCCCCceeccCCCCce
Confidence 99999999987654000000 222222 1277665443 4689999977665442 3444422110 1112345
Q ss_pred EEeeeC-CcEEEEEE
Q 035663 250 YLVELN-SDLFIVSR 263 (297)
Q Consensus 250 ~LVes~-G~LllV~~ 263 (297)
++.|.+ .+|+++..
T Consensus 332 W~~e~gvd~lv~~r~ 346 (353)
T COG4257 332 WFTEAGVDALVTTRI 346 (353)
T ss_pred eecccCcceeEEEEe
Confidence 566666 44444443
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.31 E-value=0.24 Score=44.59 Aligned_cols=40 Identities=33% Similarity=0.563 Sum_probs=35.9
Q ss_pred CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
-.|+ ||+|++..|++.| +.+.+.| ++.||+.|.-.+.+-.
T Consensus 71 ~~~~-LPpEl~lkvFS~L-Dtksl~r---~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 71 ISRS-LPPELLLKVFSML-DTKSLCR---AAQCCTMWNKLALDGS 110 (483)
T ss_pred cccc-CCHHHHHHHHHHH-hHHHHHH---HHHHHHHhhhhhhccc
Confidence 3455 9999999999999 9999999 9999999999887764
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.74 E-value=1 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663 255 NSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 255 ~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
+++|++++-.... ...-=++|.+|.++++|.++.++
T Consensus 12 ~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 12 DNSIYVFGGRDSS-------GSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp TTEEEEE--EEE--------TEE---EEEEETTTTEEEE--SS
T ss_pred CCeEEEECCCCCC-------CcccCCEEEEECCCCEEEECCCC
Confidence 3788888877753 24566789999999999998653
No 39
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=87.81 E-value=0.34 Score=42.40 Aligned_cols=42 Identities=33% Similarity=0.837 Sum_probs=34.4
Q ss_pred CCCCCCcHHHHHHHHhhcCCc-------hhhhccccccccChhHHHhhhhhh
Q 035663 6 LSWSSLPDELLSVIIQKLIDS-------DDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 6 ~~ws~LP~dll~~I~~rL~~~-------~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
..|++||+++|..|+.|..-. .+.+. +..||+.||....+..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs---~~~~~~~~r~~~~~~v 91 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVS---CAGVCDKWREISKEIV 91 (355)
T ss_pred chhhcCCHhHHHHHhhhcccccccccccccccc---ccchhhhhhhhccccc
Confidence 579999999999999999422 24566 8999999999877654
No 40
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.69 E-value=16 Score=31.28 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=89.4
Q ss_pred eEEeeCCeEEEEe-ecCCCccEEEEcCCCCCeecCCCCCCCCCce----eec----CceEEEecCCCCCCEEEEEEeCC-
Q 035663 98 VSCSSHGWLLTVS-CLDETQNMFLLHPFTRSQVKLPPPPPGTQLQ----FLN----GLRVITSTSPLDPDCLVLASLYV- 167 (297)
Q Consensus 98 ~~~s~~Gwll~~~-~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~----~~~----~~~~~ls~~p~~~~~~Vv~~~~~- 167 (297)
++.|.+|+.--.. ...+.-++.++|--+-+|+.+||-.....++ .+. ...++. . ++-+-++-...
T Consensus 25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~-y----~d~~yvWGGRND 99 (392)
T KOG4693|consen 25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE-Y----QDKAYVWGGRND 99 (392)
T ss_pred eEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE-E----cceEEEEcCccC
Confidence 3336677544410 0112257899999999999999832111111 000 000111 1 11111221111
Q ss_pred ----CCeEEEEecCCCceEeeccCccc---ccCCcCeEEeCCccccCCeEEEecc--------CCcEEEEecCCCCCCc-
Q 035663 168 ----SSKLAFCRPGDRNWTSIVHDQYI---RFTNTSAHFYDGRNCCKGYFYCLGS--------CNFIFRIRFDHPHAPT- 231 (297)
Q Consensus 168 ----~~~l~~~~~g~~~W~~~~~~~~~---~~~~~d~v~~~~~~~~~G~~Y~l~~--------~g~i~~~d~~~~~~~~- 231 (297)
.+.+.-|++....|+..+...+. +... +.+..+ +.+|.... +..+.++|++..+|..
T Consensus 100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGH-sAcV~g------n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~ 172 (392)
T KOG4693|consen 100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGH-SACVWG------NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREM 172 (392)
T ss_pred cccccceeeeeccccccccccceeeecCCccCCc-eeeEEC------cEEEEecChHHHHHhhhccceeEeccceeeeeh
Confidence 12445588999999987654111 1111 345556 77887753 2379999999999874
Q ss_pred e--ecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCC-CCceeeEEEEEEECCCCceee
Q 035663 232 A--EAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYP-CELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 232 ~--~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~-~~~~~~~~V~~ld~~~~~W~~ 293 (297)
. -.+|. | .....-+..+|+.++.+-..+..+.+. ....-.-.|-.||..++.|.+
T Consensus 173 ~Tkg~Ppr----w---RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 173 HTKGDPPR----W---RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred hccCCCch----h---hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 1 12222 1 011112233466666665554433221 112334566778888888865
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.94 E-value=0.38 Score=42.07 Aligned_cols=38 Identities=32% Similarity=0.680 Sum_probs=34.3
Q ss_pred CCCc----HHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 9 SSLP----DELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 9 s~LP----~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
+.|| +++.+.|+..| +..++-. +..|||.|+.++.++-
T Consensus 76 ~~lP~~gl~hi~e~ilsyl-d~~sLc~---celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYL-DALSLCA---CELVCKEWKRVLSDGM 117 (499)
T ss_pred HhcccccHHHHHHHHHHhc-chhhhhH---HHHHHHHHHHHhccch
Confidence 3588 89999999999 9999999 9999999999988764
No 42
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.37 E-value=26 Score=31.12 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=46.9
Q ss_pred CeEEeCCc-cccCCeEEEeccCCcEEEEecCCCCCCc--eecC-CC--CCCccccCCceeEEee-eCCcEEEEEEEccCC
Q 035663 196 SAHFYDGR-NCCKGYFYCLGSCNFIFRIRFDHPHAPT--AEAM-PF--KPHEYCCNARYNYLVE-LNSDLFIVSRFLIPH 268 (297)
Q Consensus 196 d~v~~~~~-~~~~G~~Y~l~~~g~i~~~d~~~~~~~~--~~~~-p~--~~~~~~~~~~~~~LVe-s~G~LllV~~~~~~~ 268 (297)
|.++.++. ..-+|.+|+++++|.|+.+|++...... ...+ .. .-.+|..+.-...=+. -.|+|++. +....+
T Consensus 183 dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~ 261 (342)
T PF06433_consen 183 DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL-MHQGGE 261 (342)
T ss_dssp S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE-EEE--T
T ss_pred cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE-ecCCCC
Confidence 44444322 2344899999999999999999886432 1111 10 0124432222222222 33667754 443332
Q ss_pred CCCCCCceeeEEEEEEECCCCc
Q 035663 269 KSYPCELTCAFIVCKLDLETEK 290 (297)
Q Consensus 269 ~~~~~~~~~~~~V~~ld~~~~~ 290 (297)
+.+ +...-+||.+|.++++
T Consensus 262 gsH---KdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 262 GSH---KDPGTEVWVYDLKTHK 280 (342)
T ss_dssp T-T---TS-EEEEEEEETTTTE
T ss_pred CCc---cCCceEEEEEECCCCe
Confidence 333 4667889999998764
No 43
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.01 E-value=24 Score=32.38 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCCCCeEecccccccCCCcceEEEecCCCc---EEecCCCCCCCCceEEeeCCe-EEEEeecCCCccEEEEcCCCCCee
Q 035663 54 RPNLPPLLLRNLNENCVNRQSCTFFNPKTKK---FREIPLPEVKGRWVSCSSHGW-LLTVSCLDETQNMFLLHPFTRSQV 129 (297)
Q Consensus 54 ~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~s~~Gw-ll~~~~~~~~~~~~l~NP~T~~~i 129 (297)
.+..|.|+.... .+...+|.+.... ...+.+-..+.....+..+|- .++. .....-++.+|..|++..
T Consensus 222 Hp~~plllvaG~------d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~--s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 222 HPTAPLLLVAGL------DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT--SGRRKYLYSYDLETAKVT 293 (514)
T ss_pred cCCCceEEEecC------CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe--cccceEEEEeeccccccc
Confidence 345677665532 2567788887652 333333322233333344554 4442 344567899999999988
Q ss_pred cCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceEeec-cC-cccccCCcCeEEeCCccccC
Q 035663 130 KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIV-HD-QYIRFTNTSAHFYDGRNCCK 207 (297)
Q Consensus 130 ~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~-~~-~~~~~~~~d~v~~~~~~~~~ 207 (297)
+|-++....+- ++ ...-++ |. +.|+++. +..+.|.+...-.+.|..-- .. ... +..+... +
T Consensus 294 k~~~~~g~e~~-~~--e~FeVS--hd-~~fia~~--G~~G~I~lLhakT~eli~s~KieG~v~-----~~~fsSd----s 356 (514)
T KOG2055|consen 294 KLKPPYGVEEK-SM--ERFEVS--HD-SNFIAIA--GNNGHIHLLHAKTKELITSFKIEGVVS-----DFTFSSD----S 356 (514)
T ss_pred cccCCCCcccc-hh--heeEec--CC-CCeEEEc--ccCceEEeehhhhhhhhheeeeccEEe-----eEEEecC----C
Confidence 77665432211 00 122333 22 3465543 23567777776666654311 11 222 4444421 1
Q ss_pred CeEEEeccCCcEEEEecCCCC
Q 035663 208 GYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 208 G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
.++|....+|.|+++|+..+.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred cEEEEEcCCceEEEEecCCcc
Confidence 457777778899999998764
No 44
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=83.76 E-value=34 Score=31.17 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=66.0
Q ss_pred eEEEEecCCCceEeeccC--cccccCCcCeEEeCCccccCCeEEEecc----CCcEEEEecCCCCCCceecCCC--CCCc
Q 035663 170 KLAFCRPGDRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS----CNFIFRIRFDHPHAPTAEAMPF--KPHE 241 (297)
Q Consensus 170 ~l~~~~~g~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~----~g~i~~~d~~~~~~~~~~~~p~--~~~~ 241 (297)
.++++..-.+.|..+... +..+... .||..+.+...=|-||=... ...|++||++.=.|+. ..++. |.+.
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGH-RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K-lepsga~PtpR 232 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGH-RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK-LEPSGAGPTPR 232 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccc-eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeee-ccCCCCCCCCC
Confidence 455677778999998865 2211111 33333310000022332221 1379999999988875 22222 1111
Q ss_pred cccCCceeEEeeeCCcEEEEEEEccCCCC-CCCCceeeEEEEEEECCC-----Cceeecc
Q 035663 242 YCCNARYNYLVELNSDLFIVSRFLIPHKS-YPCELTCAFIVCKLDLET-----EKWIMVN 295 (297)
Q Consensus 242 ~~~~~~~~~LVes~G~LllV~~~~~~~~~-~~~~~~~~~~V~~ld~~~-----~~W~~v~ 295 (297)
...++.|--.|.+++-+-|.+..-. .-+..++.-+.|.|+.+. -.|.+|.
T Consensus 233 ----SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 233 ----SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred ----CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 1223444447999999888864211 112256778999998875 4688775
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=77.78 E-value=4 Score=24.70 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=23.3
Q ss_pred CcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 256 SDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 256 G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
+++++++-.... .....=++|++|.++++|+++.+
T Consensus 2 ~~~~vfGG~~~~------~~~~~nd~~~~~~~~~~W~~~~~ 36 (49)
T PF13415_consen 2 NKLYVFGGYDDD------GGTRLNDVWVFDLDTNTWTRIGD 36 (49)
T ss_pred CEEEEECCcCCC------CCCEecCEEEEECCCCEEEECCC
Confidence 455666555421 13455678999999999998854
No 46
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.85 E-value=6.2 Score=21.29 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.2
Q ss_pred CeEEEeccCCcEEEEecCCCC
Q 035663 208 GYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 208 G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
|.+|.-+.+|.++++|...+.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCc
Confidence 788988888899999986553
No 47
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.41 E-value=47 Score=29.04 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=65.8
Q ss_pred EEeCCCCeEEEEec-------CCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCC----CCCCc
Q 035663 163 ASLYVSSKLAFCRP-------GDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDH----PHAPT 231 (297)
Q Consensus 163 ~~~~~~~~l~~~~~-------g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~----~~~~~ 231 (297)
+.+..+..+.+|.- -..+|.......-.+..-.|+-|.- .-.+=++-+...+|.|-.|+.-. ..|..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP--~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP--KHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc--hhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 33344677777753 1347887665410111111444320 11114555666678777776432 23442
Q ss_pred ----e-e-cCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663 232 ----A-E-AMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 232 ----~-~-~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
+ + .+|......+....-+ .-+-...++.|+..++. +......||+.++..++|.++.+|
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn-~sr~~~p~iAvgs~e~a------~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWN-PSRMHEPLIAVGSDEDA------PHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred hhhhhhccCCcccccCcceEEeec-cccccCceEEEEcccCC------ccccceEEEEecCCcceeeeehhc
Confidence 1 1 1222111111111111 22333568888887754 246789999999999999999876
No 48
>PF13964 Kelch_6: Kelch motif
Probab=75.69 E-value=12 Score=22.50 Aligned_cols=21 Identities=29% Similarity=0.448 Sum_probs=19.0
Q ss_pred ccEEEEcCCCCCeecCCCCCC
Q 035663 116 QNMFLLHPFTRSQVKLPPPPP 136 (297)
Q Consensus 116 ~~~~l~NP~T~~~i~LP~~~~ 136 (297)
..+..+||-|++|.++|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 689999999999999998764
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.65 E-value=1 Score=42.66 Aligned_cols=40 Identities=35% Similarity=0.553 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 7 SWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 7 ~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
--+.||.++...|+..| +..++++ .++||+.|+.+.....
T Consensus 107 fi~~lp~el~~~il~~L-d~~~l~~---~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFL-DGRDLLA---VRQVCRNWNKLLDDDK 146 (537)
T ss_pred hhhcccchhcccccccC-CHHHhhh---hhhhcchhhhhhhccc
Confidence 35679999999999999 8899999 9999999999998775
No 50
>smart00612 Kelch Kelch domain.
Probab=67.86 E-value=9.8 Score=22.07 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.4
Q ss_pred eeEEEEEEECCCCceeecccC
Q 035663 277 CAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 277 ~~~~V~~ld~~~~~W~~v~~L 297 (297)
..-.|+.+|.++++|.++.++
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~ 33 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSM 33 (47)
T ss_pred eeeeEEEECCCCCeEccCCCC
Confidence 345678889999999988764
No 51
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=61.09 E-value=15 Score=20.76 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=9.5
Q ss_pred eEEEeccCCcEEEEecCCC
Q 035663 209 YFYCLGSCNFIFRIRFDHP 227 (297)
Q Consensus 209 ~~Y~l~~~g~i~~~d~~~~ 227 (297)
++|+-+.+|.|+++|...+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTG 20 (38)
T ss_dssp EEEEETTTSEEEEEETTTT
T ss_pred EEEEeCCCCEEEEEECCCC
Confidence 4444444555555555444
No 52
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=60.84 E-value=5.4 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCCCCCcHHHHHHHHhhcCCchhhhc
Q 035663 6 LSWSSLPDELLSVIIQKLIDSDDILN 31 (297)
Q Consensus 6 ~~ws~LP~dll~~I~~rL~~~~d~~r 31 (297)
..|+.||.|+-..|+..| +..|+-.
T Consensus 70 ~~w~~LP~EIk~~Il~~L-~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYL-SNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcC-CHHHHHH
Confidence 569999999999999999 8888753
No 53
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=59.77 E-value=1.4e+02 Score=27.14 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred CCccEEEEcCCCCCeec
Q 035663 114 ETQNMFLLHPFTRSQVK 130 (297)
Q Consensus 114 ~~~~~~l~NP~T~~~i~ 130 (297)
.++.+.++||-||+.+-
T Consensus 177 ~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIG 193 (480)
T ss_pred cCCeEEEecCCCCCccc
Confidence 34899999999998753
No 54
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.32 E-value=1.2e+02 Score=26.53 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=67.0
Q ss_pred ccEEEEcCCCCC---eecCCCCCCC---CCceeecCceEEEecC-CCC-C-CEEEEEEeCCCCeEEEEecCCCceEeecc
Q 035663 116 QNMFLLHPFTRS---QVKLPPPPPG---TQLQFLNGLRVITSTS-PLD-P-DCLVLASLYVSSKLAFCRPGDRNWTSIVH 186 (297)
Q Consensus 116 ~~~~l~NP~T~~---~i~LP~~~~~---~~~~~~~~~~~~ls~~-p~~-~-~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~ 186 (297)
..+.++|+-||+ ++.||+-... +|+.+-....+.+... ... . .--+++.+.....+..+...+..|..+..
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNG 217 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCC
Confidence 478889999997 4568774322 2221100111222211 000 0 11122223222233444444444543322
Q ss_pred CcccccCCcCeEEeCCccccCCeEEEecc--CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeC-CcEEEEEE
Q 035663 187 DQYIRFTNTSAHFYDGRNCCKGYFYCLGS--CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELN-SDLFIVSR 263 (297)
Q Consensus 187 ~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~--~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~-G~LllV~~ 263 (297)
... ++++... |.+.++++ .+.+..||.....+....+++.- -+- .....-+++.++ |+++.+..
T Consensus 218 -Y~g-----SIa~~~~-----g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~-cGv-a~~~~~f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 218 -YIG-----SIAADRD-----GRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDA-CGV-APTDDGFLVSSGQGQLIRLSP 284 (305)
T ss_pred -ceE-----EEEEeCC-----CCEEEEECCCCCEEEEEECCCCCEeeccccCce-eee-eecCCceEEeCCCccEEEccC
Confidence 122 5655542 77776665 45788899988877654556541 000 011223888888 88766554
Q ss_pred Ec
Q 035663 264 FL 265 (297)
Q Consensus 264 ~~ 265 (297)
..
T Consensus 285 ~~ 286 (305)
T PF07433_consen 285 DG 286 (305)
T ss_pred cc
Confidence 43
No 55
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=55.85 E-value=1.8e+02 Score=27.27 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=69.6
Q ss_pred eeCC-eEEEEeecCCCccEEEEcCCCCCe----ecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEe
Q 035663 101 SSHG-WLLTVSCLDETQNMFLLHPFTRSQ----VKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCR 175 (297)
Q Consensus 101 s~~G-wll~~~~~~~~~~~~l~NP~T~~~----i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~ 175 (297)
.++| -+++ ...+.++++||-|-.. |.||-.....+-.++++.+..=-+.+..+++++++. .++..+.+
T Consensus 275 nsDGkrIvF----q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS---RGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVF----QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS---RGKAFIMR 347 (668)
T ss_pred CCCCcEEEE----ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe---cCcEEEEC
Confidence 3556 4555 4568999999998753 445554322211122222221112345678887653 35666666
Q ss_pred cCCCceEeeccC---cccccCCcCeEEeCCccccCCeEEEeccCC-cEEEEecCCCCCCceecCCCC-CCccccCCceeE
Q 035663 176 PGDRNWTSIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCLGSCN-FIFRIRFDHPHAPTAEAMPFK-PHEYCCNARYNY 250 (297)
Q Consensus 176 ~g~~~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g-~i~~~d~~~~~~~~~~~~p~~-~~~~~~~~~~~~ 250 (297)
+.++.=..++.. .+.+.+ .-+ ..+-.-+.+| .|.++|.+....-. +..+.. +..-.-.....+
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~-----~~~------e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQ-----VDP------EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEc-----cCC------cceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcE
Confidence 665543444332 222111 111 2333334455 67777776654322 111110 000000112345
Q ss_pred EeeeC--CcEEEEEEEccC
Q 035663 251 LVELN--SDLFIVSRFLIP 267 (297)
Q Consensus 251 LVes~--G~LllV~~~~~~ 267 (297)
+|-++ ++|+++..-...
T Consensus 416 ~vvaNdr~el~vididngn 434 (668)
T COG4946 416 VVVANDRFELWVIDIDNGN 434 (668)
T ss_pred EEEEcCceEEEEEEecCCC
Confidence 55554 778887776643
No 56
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=55.54 E-value=86 Score=27.69 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=49.2
Q ss_pred cccCCeEEEecc-CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC-CC------CCCc
Q 035663 204 NCCKGYFYCLGS-CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK-SY------PCEL 275 (297)
Q Consensus 204 ~~~~G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~-~~------~~~~ 275 (297)
+-.+|++|+++. .|.+..+|.+.+........|....+ -.++ |++++|+.--.++. .+ +...
T Consensus 209 RWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG------L~f~----G~llvVgmSk~R~~~~f~glpl~~~l~ 278 (335)
T TIGR03032 209 RWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG------LAFA----GDFAFVGLSKLRESRVFGGLPIEERLD 278 (335)
T ss_pred cEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc------ccee----CCEEEEEeccccCCCCcCCCchhhhhh
Confidence 334499999987 57999999886654322234441111 1222 99999987654421 11 1113
Q ss_pred eeeEEEEEEECCCCc---eeeccc
Q 035663 276 TCAFIVCKLDLETEK---WIMVNN 296 (297)
Q Consensus 276 ~~~~~V~~ld~~~~~---W~~v~~ 296 (297)
...+.|+-+|..++. |.+.++
T Consensus 279 ~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 279 ALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred hhcccEEEEECCCCCEEEEEEeCC
Confidence 345888888887764 666553
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=54.05 E-value=1.8e+02 Score=26.80 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=59.8
Q ss_pred cceEEEecCCCcEEecCCCCCCCCceEE--eeCC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEE
Q 035663 73 QSCTFFNPKTKKFREIPLPEVKGRWVSC--SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVI 149 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~--s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ 149 (297)
+...+||++++. -...||.....-.-+ +-+| ||+. ..+++.+++|+.---+ -++........+ ...
T Consensus 369 ~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat---~add~~V~lwDLRKl~--n~kt~~l~~~~~-----v~s 437 (506)
T KOG0289|consen 369 GVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLAT---AADDGSVKLWDLRKLK--NFKTIQLDEKKE-----VNS 437 (506)
T ss_pred ceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEE---EecCCeEEEEEehhhc--ccceeecccccc-----cee
Confidence 456677777664 222455422222333 6667 6666 4445669998864322 111111110001 245
Q ss_pred EecCCCCCCEEEEEEeCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeC
Q 035663 150 TSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYD 201 (297)
Q Consensus 150 ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~ 201 (297)
+++|++ |.|.++. +.+-++..|.....+|+.+..... .....+.|-|+
T Consensus 438 ~~fD~S-Gt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg 485 (506)
T KOG0289|consen 438 LSFDQS-GTYLGIA--GSDLQVYICKKKTKSWTEIKELAD-HSGLSTGVRFG 485 (506)
T ss_pred EEEcCC-CCeEEee--cceeEEEEEecccccceeeehhhh-cccccceeeec
Confidence 666654 5676554 334566778888999999876411 11233666665
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=53.78 E-value=1.7e+02 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=22.7
Q ss_pred CeEEeCCccccCCeEEEeccCCcEEEEecCCCCC
Q 035663 196 SAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHA 229 (297)
Q Consensus 196 d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~ 229 (297)
.++..+ |++|..+.+|.|+++|...+..
T Consensus 330 sp~v~~------g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 330 APVLYN------GYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CCEEEC------CEEEEEeCCCEEEEEECCCCCE
Confidence 556667 9999999999999999877653
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=51.61 E-value=1.8e+02 Score=25.97 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=51.5
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCee-cCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEec--CC
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQV-KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRP--GD 178 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~i-~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~--g~ 178 (297)
.+|.++. ....+.++.+|+-||+.+ ..+. ..... .++ .++.+.+. ..++.+..++. |.
T Consensus 240 ~~~~vy~---~~~~g~l~a~d~~tG~~~W~~~~-~~~~~--------p~~-----~~~~vyv~--~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 240 DGGQVYA---VSYQGRVAALDLRSGRVLWKRDA-SSYQG--------PAV-----DDNRLYVT--DADGVVVALDRRSGS 300 (377)
T ss_pred ECCEEEE---EEcCCEEEEEECCCCcEEEeecc-CCccC--------ceE-----eCCEEEEE--CCCCeEEEEECCCCc
Confidence 3566666 445677888888888642 2111 00000 001 02222221 12445554444 44
Q ss_pred CceEeeccC--cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCCC
Q 035663 179 RNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHA 229 (297)
Q Consensus 179 ~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~ 229 (297)
..|+.-... ... .++..+ |++|+.+.+|.|..+|...++.
T Consensus 301 ~~W~~~~~~~~~~s-----sp~i~g------~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 301 ELWKNDELKYRQLT-----APAVVG------GYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEccccccCCccc-----cCEEEC------CEEEEEeCCCEEEEEECCCCCE
Confidence 567653221 122 445556 8999988889999999876643
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=50.79 E-value=1.8e+02 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=27.4
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCC
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPG 137 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~ 137 (297)
.+.+++. .+..+..+|+|+-|++...+|.+...
T Consensus 75 ~gskIv~---~d~~~~t~vyDt~t~av~~~P~l~~p 107 (342)
T PF07893_consen 75 HGSKIVA---VDQSGRTLVYDTDTRAVATGPRLHSP 107 (342)
T ss_pred cCCeEEE---EcCCCCeEEEECCCCeEeccCCCCCC
Confidence 4668888 67778899999999999999997654
No 61
>PF13013 F-box-like_2: F-box-like domain
Probab=50.44 E-value=11 Score=27.62 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHhhcCCchhhhccccccccCh---hHHHh
Q 035663 8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCS---SWQSV 45 (297)
Q Consensus 8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk---~Wr~~ 45 (297)
-.+||.||+..|+..- .-++++. .-..|+ .|+..
T Consensus 22 l~DLP~ELl~~I~~~C-~~~~l~~---l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYC-NDPILLA---LSRTCRAYRSWRDH 58 (109)
T ss_pred hhhChHHHHHHHHhhc-CcHHHHH---HHHHHHHHHHHHHH
Confidence 4579999999999999 7777766 444554 45544
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.88 E-value=2.1e+02 Score=26.38 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=41.0
Q ss_pred CeEEEecc-CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC
Q 035663 208 GYFYCLGS-CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL 286 (297)
Q Consensus 208 G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~ 286 (297)
|-+.++.. ++.|..+|+....-...+.+++.. ....+-.+-.|..+.+. ...+.||..+.
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~------~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k 461 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK------EVNSLSFDQSGTYLGIA-------------GSDLQVYICKK 461 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccc------cceeEEEcCCCCeEEee-------------cceeEEEEEec
Confidence 54333333 456999999876544334555411 12233334446655544 24677888888
Q ss_pred CCCceeecccC
Q 035663 287 ETEKWIMVNNI 297 (297)
Q Consensus 287 ~~~~W~~v~~L 297 (297)
.++.|.+++.+
T Consensus 462 ~~k~W~~~~~~ 472 (506)
T KOG0289|consen 462 KTKSWTEIKEL 472 (506)
T ss_pred ccccceeeehh
Confidence 88888887653
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.46 E-value=1.2e+02 Score=29.86 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=48.5
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCC-
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDR- 179 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~- 179 (297)
|-+++||- ...+..+.||+|-+...+. .+.|..+ ..-+.+.|.+..|.+-+.. +..+.+|..-+.
T Consensus 378 SKn~fLLS---SSMDKTVRLWh~~~~~CL~-----~F~Hndf----VTcVaFnPvDDryFiSGSL--D~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 378 SKNNFLLS---SSMDKTVRLWHPGRKECLK-----VFSHNDF----VTCVAFNPVDDRYFISGSL--DGKVRLWSISDKK 443 (712)
T ss_pred ccCCeeEe---ccccccEEeecCCCcceee-----EEecCCe----eEEEEecccCCCcEeeccc--ccceEEeecCcCe
Confidence 67888888 6667889999999887665 2323221 1223467888888765433 678888887765
Q ss_pred --ceEeeccC
Q 035663 180 --NWTSIVHD 187 (297)
Q Consensus 180 --~W~~~~~~ 187 (297)
.|..+...
T Consensus 444 Vv~W~Dl~~l 453 (712)
T KOG0283|consen 444 VVDWNDLRDL 453 (712)
T ss_pred eEeehhhhhh
Confidence 47766643
No 64
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=49.15 E-value=1.1e+02 Score=22.77 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=29.8
Q ss_pred EEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC---CCCceeec
Q 035663 250 YLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL---ETEKWIMV 294 (297)
Q Consensus 250 ~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~---~~~~W~~v 294 (297)
...-++|.|-.|......... .......+..|.|.. +.++|++=
T Consensus 47 ~v~v~~G~ikfV~i~~~~~~~-~~~~~~~vt~Wtl~~~~~~~~~W~~d 93 (131)
T PF07762_consen 47 DVGVSGGKIKFVEIDGYEDDG-PPSGGWTVTTWTLKDPEGSSWEWKKD 93 (131)
T ss_pred eEEecCCCEEEEEEecccCCC-cccCCcEEEEEEeccCCCCCCCEEEe
Confidence 343478999999988764211 002467899999977 57889763
No 65
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.99 E-value=2e+02 Score=25.44 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=31.3
Q ss_pred cCCCCCCEEEEEEeCCCCeEEEEecCCCc-eEeeccC-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 152 TSPLDPDCLVLASLYVSSKLAFCRPGDRN-WTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 152 ~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~-W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
.+|....|+|+. .+.+-+|..++.+ -..++.+ +.. .+.+.++ +.+.+-..++.|..+|-++..
T Consensus 176 w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l-----~~~~l~~-----~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 176 WSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRIL-----CATFLDG-----SELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred EcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccce-----eeeecCC-----ceEEEecCCceEEEeccCCCc
Confidence 344433455432 4678888877653 1112221 111 2222231 555544456688888877643
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=47.31 E-value=2.3e+02 Score=26.06 Aligned_cols=149 Identities=11% Similarity=0.092 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEe-CCCCeEEEEecCCCceEeeccCcccccC
Q 035663 115 TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASL-YVSSKLAFCRPGDRNWTSIVHDQYIRFT 193 (297)
Q Consensus 115 ~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~-~~~~~l~~~~~g~~~W~~~~~~~~~~~~ 193 (297)
..++++.|+-|++...|....... ......|+ +..+++... ....+|..+....+.++.+......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~---------~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~--- 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML---------VVSDVSKD-GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI--- 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE---------EeeEECCC-CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc---
Confidence 367888888888776664322110 11112333 334433332 2345777787767777776543110
Q ss_pred CcCeEEe-CCccccCCeEEEeccC-C--cEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCC
Q 035663 194 NTSAHFY-DGRNCCKGYFYCLGSC-N--FIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHK 269 (297)
Q Consensus 194 ~~d~v~~-~~~~~~~G~~Y~l~~~-g--~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~ 269 (297)
.....+. + +.++|+.... | +|+.+|++.+.... +.. . + .. . .-+.-+|+.++....... .
T Consensus 279 d~~p~~SPD-----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~-~---g---~~-~-~~~SPDG~~Ia~~~~~~~-~ 342 (419)
T PRK04043 279 DVNGNFVED-----DKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVF-H---G---KN-N-SSVSTYKNYIVYSSRETN-N 342 (419)
T ss_pred cCccEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEe-Ccc-C---C---Cc-C-ceECCCCCEEEEEEcCCC-c
Confidence 0022333 3 1457766542 3 79999998765422 111 1 0 01 1 123334665544333221 0
Q ss_pred CCCCCceeeEEEEEEECCCCceeecc
Q 035663 270 SYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 270 ~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
. .....++||.+|.+++.+..++
T Consensus 343 ~---~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 343 E---FGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred c---cCCCCcEEEEEECCCCCeEECC
Confidence 0 0113477888887777766654
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=47.23 E-value=2e+02 Score=25.41 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=59.1
Q ss_pred eCCCCeEEEEecC--CCceEeeccC-----ccccc-CCcCeEEe-CCccccCCeE-EEeccC-CcEEEEecCCCC--CCc
Q 035663 165 LYVSSKLAFCRPG--DRNWTSIVHD-----QYIRF-TNTSAHFY-DGRNCCKGYF-YCLGSC-NFIFRIRFDHPH--APT 231 (297)
Q Consensus 165 ~~~~~~l~~~~~g--~~~W~~~~~~-----~~~~~-~~~d~v~~-~~~~~~~G~~-Y~l~~~-g~i~~~d~~~~~--~~~ 231 (297)
....+.+.+|+.. ++.++.+... .+... ...+++.. + |++ |+-.+. ..|.+|+++... ...
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------GRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------SSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------CCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 4446778777655 5566655432 11100 12255555 4 764 554443 378999986542 221
Q ss_pred eecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 232 AEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 232 ~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
....+. .+ ..-+..-+..+|+.++|.-... ..+.||++|.+++++..+.
T Consensus 284 ~~~~~~--~G---~~Pr~~~~s~~g~~l~Va~~~s----------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 284 VQTVPT--GG---KFPRHFAFSPDGRYLYVANQDS----------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEE--SS---SSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTTEEEEEE
T ss_pred EEEEeC--CC---CCccEEEEeCCCCEEEEEecCC----------CeEEEEEEeCCCCcEEEec
Confidence 011111 00 1122333445699888865543 4589999999988887654
No 68
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=44.74 E-value=2.1e+02 Score=24.90 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=52.5
Q ss_pred cEEEEcCCCCCee---cCCCCCCCCCceeecCceEEEecCCC---CCCEEEEEEeC-------CC-CeEEEEecCCC---
Q 035663 117 NMFLLHPFTRSQV---KLPPPPPGTQLQFLNGLRVITSTSPL---DPDCLVLASLY-------VS-SKLAFCRPGDR--- 179 (297)
Q Consensus 117 ~~~l~NP~T~~~i---~LP~~~~~~~~~~~~~~~~~ls~~p~---~~~~~Vv~~~~-------~~-~~l~~~~~g~~--- 179 (297)
.+.|+||.|.+.+ +|++-..... ...+....+ ...|+|++... .. +++.+|+....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s-------~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTS-------LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEE-------EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEE-------EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 5788999988754 4444321110 112222211 24688876642 12 67889988774
Q ss_pred --ceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 180 --NWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 180 --~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
+.+.+....+. -+-..+..++ |+ +++..++.|.++++....
T Consensus 76 ~~~l~~i~~~~~~-g~V~ai~~~~------~~-lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 76 NFKLKLIHSTEVK-GPVTAICSFN------GR-LVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp --EEEEEEEEEES-S-EEEEEEET------TE-EEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEEeec-CcceEhhhhC------CE-EEEeecCEEEEEEccCcc
Confidence 33433322111 0001445556 77 555666788899888776
No 69
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=42.32 E-value=1.9e+02 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=34.4
Q ss_pred ccCCeEEEeccC---CcEEEEecCCCCCCceecC----CCCCCccccCCceeEEeeeC-CcEEEEEEEc
Q 035663 205 CCKGYFYCLGSC---NFIFRIRFDHPHAPTAEAM----PFKPHEYCCNARYNYLVELN-SDLFIVSRFL 265 (297)
Q Consensus 205 ~~~G~~Y~l~~~---g~i~~~d~~~~~~~~~~~~----p~~~~~~~~~~~~~~LVes~-G~LllV~~~~ 265 (297)
.|++++|.++.. |+|++.|+++.....++.. |++. ......+|-+. |++++..-..
T Consensus 233 IV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~-----nsDGkrIvFq~~GdIylydP~t 296 (668)
T COG4946 233 IVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNA-----NSDGKRIVFQNAGDIYLYDPET 296 (668)
T ss_pred EEcceEEEEecccCccceEEeccCCchhhhcCCchhcccccc-----CCCCcEEEEecCCcEEEeCCCc
Confidence 344999999874 5999999998876543322 3321 12234455554 8887755443
No 70
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=39.05 E-value=33 Score=18.49 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=17.9
Q ss_pred CCeEEEEeecCC-CccEEEEcCCCCCe
Q 035663 103 HGWLLTVSCLDE-TQNMFLLHPFTRSQ 128 (297)
Q Consensus 103 ~Gwll~~~~~~~-~~~~~l~NP~T~~~ 128 (297)
.||... .+. .+..|-+|..|++.
T Consensus 3 ~gW~~~---~~~~~g~~YY~N~~t~~s 26 (31)
T PF00397_consen 3 PGWEEY---FDPDSGRPYYYNHETGES 26 (31)
T ss_dssp TTEEEE---EETTTSEEEEEETTTTEE
T ss_pred cCCEEE---EcCCCCCEEEEeCCCCCE
Confidence 578866 544 59999999999974
No 71
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=38.97 E-value=2.9e+02 Score=24.86 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCeEEEEe--cCCCceEeeccC-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 168 SSKLAFCR--PGDRNWTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 168 ~~~l~~~~--~g~~~W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
+..+.-++ .|...|+.-... ... .++..+ |++|+.+.+|.|+++|...+.
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~~~s-----sP~v~~------~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGEALS-----RPVVSD------GLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCceec-----CCEEEC------CEEEEECCCCEEEEEEccCCC
Confidence 44554443 577789753322 122 445556 777776666777777776543
No 72
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.96 E-value=2.6e+02 Score=27.78 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred cceEEEecCCCcEEecCCCCCCCCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEe
Q 035663 73 QSCTFFNPKTKKFREIPLPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITS 151 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls 151 (297)
+..+.||+..++.+.+++.....-.++- |..|.++++ .++.+...++|-..+..++-=.....-+ .+-+|
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~llla--vdE~g~~~lvs~~~r~Vlh~f~fk~~v~-------~i~fS 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLA--VDERGRALLVSLLSRSVLHRFNFKRGVG-------AIKFS 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEE--EcCCCcEEEEecccceeeEEEeecCccc-------eEEEC
Q ss_pred cCCCCCCEEEEEEeCCCCeEEEEecCCC
Q 035663 152 TSPLDPDCLVLASLYVSSKLAFCRPGDR 179 (297)
Q Consensus 152 ~~p~~~~~~Vv~~~~~~~~l~~~~~g~~ 179 (297)
.+ +.+++++. .+-+.+|+....
T Consensus 106 Pn---g~~fav~~---gn~lqiw~~P~~ 127 (893)
T KOG0291|consen 106 PN---GKFFAVGC---GNLLQIWHAPGE 127 (893)
T ss_pred CC---CcEEEEEe---cceeEEEecCcc
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.97 E-value=1.4e+02 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=17.7
Q ss_pred eEEEEeecCCCccEEEEcCCCCCeec
Q 035663 105 WLLTVSCLDETQNMFLLHPFTRSQVK 130 (297)
Q Consensus 105 wll~~~~~~~~~~~~l~NP~T~~~i~ 130 (297)
+.+. ......+.||||+.+..++
T Consensus 31 Y~lt---cGsdrtvrLWNp~rg~lik 53 (307)
T KOG0316|consen 31 YCLT---CGSDRTVRLWNPLRGALIK 53 (307)
T ss_pred EEEE---cCCCceEEeecccccceee
Confidence 4444 5556789999999998776
No 74
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=37.01 E-value=2.3e+02 Score=22.99 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=53.7
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCe---ecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCe-EEEEecC
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQ---VKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSK-LAFCRPG 177 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~---i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~-l~~~~~g 177 (297)
.++.+++ ....+.++.+||-||+. .++...........+......+... ++ .|.+.. .+.. +++ ...
T Consensus 121 ~~~~~~~---~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~-~~g~~~~~-d~~ 191 (238)
T PF13360_consen 121 DGDRLYV---GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS---DG-RVYVSS-GDGRVVAV-DLA 191 (238)
T ss_dssp ETTEEEE---EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC---TT-EEEEEC-CTSSEEEE-ETT
T ss_pred ecCEEEE---EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE---CC-EEEEEc-CCCeEEEE-ECC
Confidence 3566666 44578899999999985 3342222111111000001111111 23 333332 2332 455 555
Q ss_pred CCc--eEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 178 DRN--WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 178 ~~~--W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
.++ |... ..... ..+...+ |.+|+.+.++.|+++|+..+.
T Consensus 192 tg~~~w~~~-~~~~~----~~~~~~~------~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 192 TGEKLWSKP-ISGIY----SLPSVDG------GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTEEEEEEC-SS-EC----ECEECCC------TEEEEEETTTEEEEEETTTTE
T ss_pred CCCEEEEec-CCCcc----CCceeeC------CEEEEEeCCCEEEEEECCCCC
Confidence 544 7443 22111 0234445 888988878899999988764
No 75
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=36.44 E-value=2.3e+02 Score=22.93 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=68.3
Q ss_pred cceEEEecCCCc-EEecCCCCCCCCceEE---eeCCeEEEEeecCCCccEEEEcCCCCCee---cCCCCCCCCCceeecC
Q 035663 73 QSCTFFNPKTKK-FREIPLPEVKGRWVSC---SSHGWLLTVSCLDETQNMFLLHPFTRSQV---KLPPPPPGTQLQFLNG 145 (297)
Q Consensus 73 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~---s~~Gwll~~~~~~~~~~~~l~NP~T~~~i---~LP~~~~~~~~~~~~~ 145 (297)
+....+|+.+++ ..+..+.. ......+ ..+|.++. .+..+.++.+|+-||+.+ .++.... .....+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~---~~~~~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~- 75 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYV---ASGDGNLYALDAKTGKVLWRFDLPGPIS--GAPVVD- 75 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEE---EETTSEEEEEETTTSEEEEEEECSSCGG--SGEEEE-
T ss_pred CEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEE---EcCCCEEEEEECCCCCEEEEeecccccc--ceeeec-
Confidence 456778997774 33444421 1333443 36888888 556789999999999853 4432211 100110
Q ss_pred ceEEEecCCCCCCEEEEEEeCCCCeEEEEe--cCCCceEe-eccCcccc-cCCcCeEEeCCccccCCeEEEeccCCcEEE
Q 035663 146 LRVITSTSPLDPDCLVLASLYVSSKLAFCR--PGDRNWTS-IVHDQYIR-FTNTSAHFYDGRNCCKGYFYCLGSCNFIFR 221 (297)
Q Consensus 146 ~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~--~g~~~W~~-~~~~~~~~-~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~ 221 (297)
++-+++.. .++.+..+. .|...|+. ....+... .......+.+ +.+|+...++.|.+
T Consensus 76 -----------~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 76 -----------GGRVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG------DRLYVGTSSGKLVA 136 (238)
T ss_dssp -----------TTEEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET------TEEEEEETCSEEEE
T ss_pred -----------cccccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEec------CEEEEEeccCcEEE
Confidence 11111111 233454444 45667884 32211110 0111334445 77888777888888
Q ss_pred EecCCCC
Q 035663 222 IRFDHPH 228 (297)
Q Consensus 222 ~d~~~~~ 228 (297)
+|+..+.
T Consensus 137 ~d~~tG~ 143 (238)
T PF13360_consen 137 LDPKTGK 143 (238)
T ss_dssp EETTTTE
T ss_pred EecCCCc
Confidence 8877654
No 76
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=34.80 E-value=3.2e+02 Score=24.42 Aligned_cols=126 Identities=11% Similarity=0.027 Sum_probs=62.6
Q ss_pred EEecCCCCCCEEEEEEeCCCCeEEEEecCC-Cc-eEeeccC---cccccCC--cC-eEEeCCccccCCeEEEeccCC--c
Q 035663 149 ITSTSPLDPDCLVLASLYVSSKLAFCRPGD-RN-WTSIVHD---QYIRFTN--TS-AHFYDGRNCCKGYFYCLGSCN--F 218 (297)
Q Consensus 149 ~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~-~~-W~~~~~~---~~~~~~~--~d-~v~~~~~~~~~G~~Y~l~~~g--~ 218 (297)
-++.|+ ++.|++++-+. .+.+.+|...+ ++ |..+... ...-.+. +. +.+.+ ..-+|++-++..-| .
T Consensus 93 yvsvd~-~g~~vf~AnY~-~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~--~tP~~~~l~v~DLG~Dr 168 (346)
T COG2706 93 YVSVDE-DGRFVFVANYH-SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN--FTPDGRYLVVPDLGTDR 168 (346)
T ss_pred EEEECC-CCCEEEEEEcc-CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee--eCCCCCEEEEeecCCce
Confidence 344443 35677666554 57888888753 33 3332211 0000000 01 11110 11227666555444 7
Q ss_pred EEEEecCCCCCCc--eecCCCCCCccccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 219 IFRIRFDHPHAPT--AEAMPFKPHEYCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 219 i~~~d~~~~~~~~--~~~~p~~~~~~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
|..|+++.+.... ....+. +...++++-.. |++..+-... ..++.||+.|...++.+++.
T Consensus 169 i~~y~~~dg~L~~~~~~~v~~-------G~GPRHi~FHpn~k~aY~v~EL----------~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEVKP-------GAGPRHIVFHPNGKYAYLVNEL----------NSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred EEEEEcccCccccccccccCC-------CCCcceEEEcCCCcEEEEEecc----------CCEEEEEEEcCCCceEEEee
Confidence 8888888655432 111222 22345666665 7765544333 35677888877666666654
No 77
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.82 E-value=1.6e+02 Score=26.45 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred cCCeEEEe-ccCC-cEEEEecCCC--CCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEE
Q 035663 206 CKGYFYCL-GSCN-FIFRIRFDHP--HAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIV 281 (297)
Q Consensus 206 ~~G~~Y~l-~~~g-~i~~~d~~~~--~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V 281 (297)
.+.++|+- .+.| .-+.+|+... .|...-..|.. .....--+-.+|+|++..-+...... ....--.+
T Consensus 45 ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~------~rnqa~~a~~~~kLyvFgG~Gk~~~~---~~~~~nd~ 115 (381)
T COG3055 45 IGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGG------ARNQAVAAVIGGKLYVFGGYGKSVSS---SPQVFNDA 115 (381)
T ss_pred ecceEEEEeccCCccceehhhhcCCCCceEcccCCCc------ccccchheeeCCeEEEeeccccCCCC---CceEeeee
Confidence 33677764 3333 6777787654 35532233431 12334445678999999888765221 13566789
Q ss_pred EEEECCCCceeecccC
Q 035663 282 CKLDLETEKWIMVNNI 297 (297)
Q Consensus 282 ~~ld~~~~~W~~v~~L 297 (297)
|++|.....|.+++++
T Consensus 116 Y~y~p~~nsW~kl~t~ 131 (381)
T COG3055 116 YRYDPSTNSWHKLDTR 131 (381)
T ss_pred EEecCCCChhheeccc
Confidence 9999999999998763
No 78
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=33.65 E-value=1.8e+02 Score=25.95 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=38.2
Q ss_pred CeEEEeccCC--cEEEEecCCCC--CCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEE
Q 035663 208 GYFYCLGSCN--FIFRIRFDHPH--APTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCK 283 (297)
Q Consensus 208 G~~Y~l~~~g--~i~~~d~~~~~--~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ 283 (297)
|+|..+...| .|.+|-++... .......+. .+ ..-+-+-...+|+++++....+ ..+.||+
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--eg---~~PR~F~i~~~g~~Liaa~q~s----------d~i~vf~ 319 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT--EG---QFPRDFNINPSGRFLIAANQKS----------DNITVFE 319 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc--CC---cCCccceeCCCCCEEEEEccCC----------CcEEEEE
Confidence 8865554433 56666665443 221111111 00 1123345566677777766543 3488888
Q ss_pred EECCCCceeec
Q 035663 284 LDLETEKWIMV 294 (297)
Q Consensus 284 ld~~~~~W~~v 294 (297)
.|.++++..+.
T Consensus 320 ~d~~TG~L~~~ 330 (346)
T COG2706 320 RDKETGRLTLL 330 (346)
T ss_pred EcCCCceEEec
Confidence 88887765543
No 79
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=33.36 E-value=51 Score=24.55 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.3
Q ss_pred ceeeEEEEEEECCCCceeecc
Q 035663 275 LTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 275 ~~~~~~V~~ld~~~~~W~~v~ 295 (297)
.+..+.||++|.++++|+|.+
T Consensus 25 ~a~~v~vY~f~~~~~~W~K~~ 45 (122)
T PF06058_consen 25 TASHVVVYKFDHETNEWEKTD 45 (122)
T ss_dssp EEEEEEEEEEETTTTEEEEEE
T ss_pred hCCeEEEEeecCCCCcEeecC
Confidence 467899999999999999864
No 80
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.85 E-value=3.3e+02 Score=23.58 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEE--ecCCCceEeecc
Q 035663 113 DETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFC--RPGDRNWTSIVH 186 (297)
Q Consensus 113 ~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~--~~g~~~W~~~~~ 186 (297)
..++.+.-+||-||.-+== ...+.++ +..+.+. ++|+|+..+ .+.+.|. +.|...|+-...
T Consensus 30 SHs~~~~avd~~sG~~~We----~ilg~Ri--E~sa~vv-----gdfVV~GCy--~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 30 SHSGIVIAVDPQSGNLIWE----AILGVRI--ECSAIVV-----GDFVVLGCY--SGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred cCCceEEEecCCCCcEEee----hhhCcee--eeeeEEE-----CCEEEEEEc--cCcEEEEEecchhheeeeeeh
Confidence 3446666677877763210 1111221 1233332 678877765 3556654 456678986544
No 81
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=32.08 E-value=21 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.6
Q ss_pred EcCCCCCeec
Q 035663 121 LHPFTRSQVK 130 (297)
Q Consensus 121 ~NP~T~~~i~ 130 (297)
.||+|++.|.
T Consensus 12 ~NP~Tgr~Ik 21 (37)
T PF08793_consen 12 VNPITGRKIK 21 (37)
T ss_pred CCCCCCCcCC
Confidence 7999999876
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.96 E-value=38 Score=29.01 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCCCCCcHHHHHHHHhhcCCchhhhccccccccChh
Q 035663 5 QLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSS 41 (297)
Q Consensus 5 ~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~ 41 (297)
..-..+||.+++.+|+.||.+-.|++. +.-|=-.
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s---~aqa~et 232 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLES---LAQAWET 232 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHH---HHHhhHH
Confidence 345789999999999999988899988 6666433
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=30.99 E-value=4e+02 Score=24.04 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=48.2
Q ss_pred cceEEEecCCCc-EEecCCCCCCCCceEE--eeCCeEEEEeecCCCccEEEEcCCCCCeecC-----CCCCCCC--Ccee
Q 035663 73 QSCTFFNPKTKK-FREIPLPEVKGRWVSC--SSHGWLLTVSCLDETQNMFLLHPFTRSQVKL-----PPPPPGT--QLQF 142 (297)
Q Consensus 73 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~--s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~L-----P~~~~~~--~~~~ 142 (297)
+....+++.++. .+++.-.. ......+ +..||+++. ....+.++++|-.||+.+-- |.+.... +.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e- 287 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE- 287 (399)
T ss_pred ceEEEEecCCCceeEEecccc-cCcCCccccccccceeEe--ccCCccEEEEccccceEEEecCCCCccccccchhhhh-
Confidence 344566777664 33333111 0111112 457777772 23346778888888775431 2111110 010
Q ss_pred ecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCc
Q 035663 143 LNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRN 180 (297)
Q Consensus 143 ~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~ 180 (297)
. +-+-|......++++..-+++|++|.....+
T Consensus 288 -----s-ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 288 -----S-VESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred -----h-hhhcccccccchhhcccccceEEEEecccch
Confidence 0 1112333455555655568899999976544
No 84
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=30.66 E-value=1.2e+02 Score=17.81 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.4
Q ss_pred CeEEEeccCCcEEEEecCCCCCC
Q 035663 208 GYFYCLGSCNFIFRIRFDHPHAP 230 (297)
Q Consensus 208 G~~Y~l~~~g~i~~~d~~~~~~~ 230 (297)
+..|.-+..+.+.++|++...-.
T Consensus 12 ~yaYva~~~~Gl~IvDISnPs~P 34 (42)
T PF08309_consen 12 NYAYVADGNNGLVIVDISNPSNP 34 (42)
T ss_pred CEEEEEeCCCCEEEEECCCCCCC
Confidence 88888877778999999876543
No 85
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=30.41 E-value=2.1e+02 Score=27.84 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=46.2
Q ss_pred eEE-eeCC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEe
Q 035663 98 VSC-SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCR 175 (297)
Q Consensus 98 ~~~-s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~ 175 (297)
+++ |++| |++. .+..+.++++|.=|++...|++..... ..+.++.|....-.|++- .++++.-|+
T Consensus 480 ~l~~SsdG~yiaa---~~t~g~I~v~nl~~~~~~~l~~rln~~--------vTa~~~~~~~~~~lvvat--s~nQv~efd 546 (691)
T KOG2048|consen 480 RLVVSSDGNYIAA---ISTRGQIFVYNLETLESHLLKVRLNID--------VTAAAFSPFVRNRLVVAT--SNNQVFEFD 546 (691)
T ss_pred eEEEcCCCCEEEE---EeccceEEEEEcccceeecchhccCcc--------eeeeeccccccCcEEEEe--cCCeEEEEe
Confidence 555 6655 9998 666799999999999998888644321 123334443333333332 356776666
Q ss_pred cCC---CceEeecc
Q 035663 176 PGD---RNWTSIVH 186 (297)
Q Consensus 176 ~g~---~~W~~~~~ 186 (297)
..+ .+|.....
T Consensus 547 i~~~~l~~ws~~nt 560 (691)
T KOG2048|consen 547 IEARNLTRWSKNNT 560 (691)
T ss_pred cchhhhhhhhhccc
Confidence 643 35665544
No 86
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=30.11 E-value=89 Score=16.23 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=18.5
Q ss_pred CCeEEEEeecCCCccEEEEcCCCCCe
Q 035663 103 HGWLLTVSCLDETQNMFLLHPFTRSQ 128 (297)
Q Consensus 103 ~Gwll~~~~~~~~~~~~l~NP~T~~~ 128 (297)
.||... .+..+..+.+|..|++.
T Consensus 2 ~~W~~~---~~~~g~~yy~n~~t~~s 24 (31)
T cd00201 2 PGWEER---WDPDGRVYYYNHNTKET 24 (31)
T ss_pred CCCEEE---ECCCCCEEEEECCCCCE
Confidence 478877 66678999999999874
No 87
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=29.82 E-value=90 Score=17.32 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=15.5
Q ss_pred CeEEEeccC-CcEEEEecCCC
Q 035663 208 GYFYCLGSC-NFIFRIRFDHP 227 (297)
Q Consensus 208 G~~Y~l~~~-g~i~~~d~~~~ 227 (297)
+++||.+.. +.|.+.++++.
T Consensus 21 ~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 21 GRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CEEEEEeCCCCEEEEEeCCCC
Confidence 899999875 47888887654
No 88
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.72 E-value=3.8e+02 Score=23.50 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=28.2
Q ss_pred CeEEEEecCCCceEeeccC---cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEe--cCCCCCCc
Q 035663 169 SKLAFCRPGDRNWTSIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIR--FDHPHAPT 231 (297)
Q Consensus 169 ~~l~~~~~g~~~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d--~~~~~~~~ 231 (297)
..+.-+.+|...|..+... ++. .+.+-. +|.++.+++.|.|..=| -+.+.|..
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq-----~~gf~~-----~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQ-----SMGFSP-----DGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EE-----EEEE-T-----TS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred cEEEEecCCCccceEEccCccceeh-----hceecC-----CCCEEEEeCCcEEEEccCCCCcccccc
Confidence 3445577888899998864 333 555553 28899988777777776 23344543
No 89
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=28.66 E-value=3e+02 Score=25.84 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=45.6
Q ss_pred cCeEEeCCccccCCeEEEeccCCcEEEEecCCCCCCceecCCCCCCccccCCceeEEee-eCCcEEEEEEEccCCCCCCC
Q 035663 195 TSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVE-LNSDLFIVSRFLIPHKSYPC 273 (297)
Q Consensus 195 ~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVe-s~G~LllV~~~~~~~~~~~~ 273 (297)
..++.++ |++|++...|..+.+|+..-.......+-....+ .......-++ ..|+|+-+......
T Consensus 124 t~v~~~~------g~llAl~E~g~p~~lDp~TLeT~g~~~~~~~l~~--~~~tAHp~~Dp~tg~l~~~~~~~~~------ 189 (486)
T PF03055_consen 124 TNVIPHG------GRLLALWEGGPPYELDPDTLETLGPFDFDGKLPG--QPFTAHPKIDPETGELYNFGYSLGP------ 189 (486)
T ss_dssp SEEEEET------TEEEEE-TTSEEEEEETTTCEEEEEEEGGGTSST--S---S--EEETTTTTEEEEEEECSS------
T ss_pred eeeEEEC------CEEEEEEcCCCCEEechhHhhhcCcccccccccC--cccccCceEcccCCcEEEEEEEecc------
Confidence 3677888 9999999999999999765432221111110110 0112223344 56999888886532
Q ss_pred CceeeEEEEEEECCC
Q 035663 274 ELTCAFIVCKLDLET 288 (297)
Q Consensus 274 ~~~~~~~V~~ld~~~ 288 (297)
.....+.+|++|.+.
T Consensus 190 ~~~~~~~~~~~~~~g 204 (486)
T PF03055_consen 190 EGSPKLTVYEIDPDG 204 (486)
T ss_dssp TTSEEEEEEEE-TTS
T ss_pred CCCCcEEEEEEcCcc
Confidence 025788999998865
No 90
>PRK04792 tolB translocation protein TolB; Provisional
Probab=28.33 E-value=4.8e+02 Score=24.13 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=55.0
Q ss_pred eeCC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEe-CCCCeEEEEecCC
Q 035663 101 SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASL-YVSSKLAFCRPGD 178 (297)
Q Consensus 101 s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~-~~~~~l~~~~~g~ 178 (297)
|.+| +|+++...+...+++++|+-+++...+...+... ....+ .|+ +..+++... .....|.+++...
T Consensus 226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-------~~~~w--SPD-G~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-------GAPRF--SPD-GKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-------CCeeE--CCC-CCEEEEEEeCCCCeEEEEEECCC
Confidence 5555 6777431223357999999998876665433211 01223 343 334433322 1233567777776
Q ss_pred CceEeeccCcccccCCcCeEEe-CCccccCCe-EEEecc-CC--cEEEEecCCCCC
Q 035663 179 RNWTSIVHDQYIRFTNTSAHFY-DGRNCCKGY-FYCLGS-CN--FIFRIRFDHPHA 229 (297)
Q Consensus 179 ~~W~~~~~~~~~~~~~~d~v~~-~~~~~~~G~-~Y~l~~-~g--~i~~~d~~~~~~ 229 (297)
+..+.+..... ....+.+. + |+ +++... .| .|+.+|+..+..
T Consensus 296 g~~~~lt~~~~---~~~~p~wSpD------G~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 296 KALTRITRHRA---IDTEPSWHPD------GKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCeEECccCCC---CccceEECCC------CCEEEEEECCCCCceEEEEECCCCCE
Confidence 66665543210 00133333 3 44 444332 23 688888876543
No 91
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=27.94 E-value=1e+02 Score=16.26 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.7
Q ss_pred CCeEEEEeecCCCccEEEEcCCCCCe
Q 035663 103 HGWLLTVSCLDETQNMFLLHPFTRSQ 128 (297)
Q Consensus 103 ~Gwll~~~~~~~~~~~~l~NP~T~~~ 128 (297)
.||... .+..+..+.+|..|++.
T Consensus 3 ~gW~~~---~~~~g~~yy~n~~t~~s 25 (32)
T smart00456 3 PGWEER---KDPDGRPYYYNHETKET 25 (32)
T ss_pred CCCEEE---ECCCCCEEEEECCCCCE
Confidence 578888 66668899999999874
No 92
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.91 E-value=1.7e+02 Score=25.39 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=43.8
Q ss_pred cceEEEecCCCcEEecCCCCCC-CCceEE-eeCCeEEEEeecCC-CccEEEEcCCCCCeecCCCCCC
Q 035663 73 QSCTFFNPKTKKFREIPLPEVK-GRWVSC-SSHGWLLTVSCLDE-TQNMFLLHPFTRSQVKLPPPPP 136 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~-~~~~~~-s~~Gwll~~~~~~~-~~~~~l~NP~T~~~i~LP~~~~ 136 (297)
.....|||+...|...++|... ....+. =.+|-+-+ .+- .+.+.=+||.|.+...||....
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~---sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL---SEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe---eccccCceeecCcccceEEEecCCCC
Confidence 4567799999999999999742 223333 56787777 443 3778889999999887776543
No 93
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=27.52 E-value=1.4e+02 Score=18.72 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=24.3
Q ss_pred eEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECC
Q 035663 249 NYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLE 287 (297)
Q Consensus 249 ~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~ 287 (297)
...++++|+++++...... .....+.|.||+.+
T Consensus 5 ~~~~q~DGkIlv~G~~~~~------~~~~~~~l~Rln~D 37 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNS------SGNNDFVLARLNAD 37 (55)
T ss_pred EEEECCCCcEEEEEEeecC------CCcccEEEEEECCC
Confidence 4556788999999988642 13567888888764
No 94
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.96 E-value=2.3e+02 Score=23.38 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=18.6
Q ss_pred CeEEEeccCCcEEEEecCCCCC
Q 035663 208 GYFYCLGSCNFIFRIRFDHPHA 229 (297)
Q Consensus 208 G~~Y~l~~~g~i~~~d~~~~~~ 229 (297)
.-+.+++..|.++++|+.....
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCee
Confidence 6688889999999999987654
No 95
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=26.47 E-value=2.8e+02 Score=24.50 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=35.7
Q ss_pred Ce-EEEeccC-CcEEEEecCCCCCCc----eecCCCCCCccccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceeeEE
Q 035663 208 GY-FYCLGSC-NFIFRIRFDHPHAPT----AEAMPFKPHEYCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCAFI 280 (297)
Q Consensus 208 G~-~Y~l~~~-g~i~~~d~~~~~~~~----~~~~p~~~~~~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~~~ 280 (297)
|+ +|+.+.. ..|.+|+++...... .+..|. +..-++++-+. |+.+.|.... ...+.
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-------G~GPRh~~f~pdg~~~Yv~~e~----------s~~v~ 217 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-------GSGPRHLAFSPDGKYAYVVNEL----------SNTVS 217 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-------TSSEEEEEE-TTSSEEEEEETT----------TTEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-------CCCCcEEEEcCCcCEEEEecCC----------CCcEE
Confidence 66 5554443 379999998765221 122333 12345666554 6655554322 35667
Q ss_pred EEEEECCCCceeec
Q 035663 281 VCKLDLETEKWIMV 294 (297)
Q Consensus 281 V~~ld~~~~~W~~v 294 (297)
||+++.+..++..+
T Consensus 218 v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 218 VFDYDPSDGSLTEI 231 (345)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEeecccCCceeEE
Confidence 77777555555443
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=26.30 E-value=3.1e+02 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred eeCC-eEEEEeecCCCccEEEEcCCCCCeec
Q 035663 101 SSHG-WLLTVSCLDETQNMFLLHPFTRSQVK 130 (297)
Q Consensus 101 s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~ 130 (297)
|.+| ||+. +..++.+.+++..|+..|+
T Consensus 585 S~DgrWlis---asmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 585 SPDGRWLIS---ASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCCcEEEE---eecCCcEEEEeccCcceee
Confidence 7777 9999 7778999999999998776
No 97
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.89 E-value=5e+02 Score=23.47 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=31.0
Q ss_pred CceeEEeeeC------Cc-EEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecccC
Q 035663 246 ARYNYLVELN------SD-LFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 246 ~~~~~LVes~------G~-LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
....|++.|+ |. |.+|.-..+. ..++....+..+.....+|.++..|
T Consensus 212 G~~pf~~~aGsa~~~~~n~~~lInGEiKp-----GLRt~~~k~~~~~~~~~~w~~l~~l 265 (381)
T COG3055 212 GENPFYGNAGSAVVIKGNKLTLINGEIKP-----GLRTAEVKQADFGGDNLKWLKLSDL 265 (381)
T ss_pred CcCcccCccCcceeecCCeEEEEcceecC-----CccccceeEEEeccCceeeeeccCC
Confidence 3455666655 44 8888877653 2356677777777677899888654
No 98
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.34 E-value=5e+02 Score=23.35 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=70.5
Q ss_pred cceEEEecCCCcE-EecCCCCCCC------CceEE-eeCC-eEEEEeecCCCccEEEEcCCCCCeec-CCCCCCCCCcee
Q 035663 73 QSCTFFNPKTKKF-REIPLPEVKG------RWVSC-SSHG-WLLTVSCLDETQNMFLLHPFTRSQVK-LPPPPPGTQLQF 142 (297)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~p~~~~------~~~~~-s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~ 142 (297)
+....||+.+.+. .++++|..+. ...+- |.+| ||+.. +.++...+-++|.-+++.+. +|-+..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~p~~~V~VvD~~~~kvv~ei~vp~~------ 149 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-QFSPSPAVGVVDLEGKAFVRMMDVPDC------ 149 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-cCCCCCEEEEEECCCCcEEEEEeCCCC------
Confidence 5677899998854 3566654321 11233 7787 55552 23445789999999998643 332111
Q ss_pred ecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecC-CCceEeeccCcccccCCcCeEEeCCc-cccCCeEEEeccCCcEE
Q 035663 143 LNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPG-DRNWTSIVHDQYIRFTNTSAHFYDGR-NCCKGYFYCLGSCNFIF 220 (297)
Q Consensus 143 ~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g-~~~W~~~~~~~~~~~~~~d~v~~~~~-~~~~G~~Y~l~~~g~i~ 220 (297)
+.++.. +...+.+.+. +..+.....+ ++. .......+- ....+.++-++. ...+|+.|+++..|.|.
T Consensus 150 ----~~vy~t--~e~~~~~~~~---Dg~~~~v~~d~~g~-~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~ 218 (352)
T TIGR02658 150 ----YHIFPT--ANDTFFMHCR---DGSLAKVGYGTKGN-PKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIF 218 (352)
T ss_pred ----cEEEEe--cCCccEEEee---cCceEEEEecCCCc-eEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEE
Confidence 111111 1123443332 3444444433 222 211111110 011133333221 23359999999999999
Q ss_pred EEecCCCC
Q 035663 221 RIRFDHPH 228 (297)
Q Consensus 221 ~~d~~~~~ 228 (297)
++|++...
T Consensus 219 ~id~~~~~ 226 (352)
T TIGR02658 219 QIDLSSGD 226 (352)
T ss_pred EEecCCCc
Confidence 99987654
No 99
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.33 E-value=3.3e+02 Score=22.49 Aligned_cols=80 Identities=10% Similarity=0.136 Sum_probs=42.8
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeecCC----CCCCCCCce-eecCceE-EEecCCCCCCEEEEEEeCCCCeEEEE
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLP----PPPPGTQLQ-FLNGLRV-ITSTSPLDPDCLVLASLYVSSKLAFC 174 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP----~~~~~~~~~-~~~~~~~-~ls~~p~~~~~~Vv~~~~~~~~l~~~ 174 (297)
+.+.||+. ....+.+++||--+++.+-=| |+-...... -.....+ .+..+ ..|. -++.+. .+....|
T Consensus 20 ~~~~~Ll~---iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~-PiV~ls--ng~~y~y 92 (219)
T PF07569_consen 20 CNGSYLLA---ITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGV-PIVTLS--NGDSYSY 92 (219)
T ss_pred eCCCEEEE---EeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCC-EEEEEe--CCCEEEe
Confidence 66778777 677899999998887653322 111100000 0000011 11122 2232 233333 3566789
Q ss_pred ecCCCceEeeccC
Q 035663 175 RPGDRNWTSIVHD 187 (297)
Q Consensus 175 ~~g~~~W~~~~~~ 187 (297)
+..-+.|..+.+.
T Consensus 93 ~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 93 SPDLGCWIRVSDS 105 (219)
T ss_pred ccccceeEEeccc
Confidence 9888999998775
No 100
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=23.15 E-value=33 Score=24.27 Aligned_cols=19 Identities=37% Similarity=0.678 Sum_probs=15.1
Q ss_pred CCCCCCCcHHHHHHHHhhc
Q 035663 5 QLSWSSLPDELLSVIIQKL 23 (297)
Q Consensus 5 ~~~ws~LP~dll~~I~~rL 23 (297)
..+|+.||.|+|..|..|+
T Consensus 51 Ta~~~~~p~~~L~~is~~I 69 (93)
T PF00958_consen 51 TADWARLPWELLEEISSRI 69 (93)
T ss_dssp SEEE-TB-HHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHH
Confidence 3678999999999999998
No 101
>PTZ00486 apyrase Superfamily; Provisional
Probab=22.39 E-value=2.2e+02 Score=25.50 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=25.7
Q ss_pred CeEEeCCccccCCeEEEecc-CCcEEEEecCCCCCCceecCCC
Q 035663 196 SAHFYDGRNCCKGYFYCLGS-CNFIFRIRFDHPHAPTAEAMPF 237 (297)
Q Consensus 196 d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~ 237 (297)
..+.|| |+||.++. +|-|+.++.+.....-.++++.
T Consensus 119 ELv~Fn------gkLys~DDrTGiVy~i~~~~~~~~PwvIL~d 155 (352)
T PTZ00486 119 ELVSFN------GKLYGFDDRTGIVYEIDIDKKKAYPRHILSD 155 (352)
T ss_pred hhheeC------CEEEEEeCCceEEEEEEcCCCcEeeEEEEec
Confidence 889999 99999975 6889999876653221244443
No 102
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.28 E-value=1.7e+02 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCceEeeccC---cccccCCcCeEEeCC-ccccCCeEEEec-cCCcEEEEecCCCCCCc
Q 035663 168 SSKLAFCRPGDRNWTSIVHD---QYIRFTNTSAHFYDG-RNCCKGYFYCLG-SCNFIFRIRFDHPHAPT 231 (297)
Q Consensus 168 ~~~l~~~~~g~~~W~~~~~~---~~~~~~~~d~v~~~~-~~~~~G~~Y~l~-~~g~i~~~d~~~~~~~~ 231 (297)
...+.+|.....+|...... ... ++.+.+. ...+.|.|-.-. ....+..+|+....|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~-----~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVT-----DLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEE-----EEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 45778899999999998865 333 4444421 122225554444 23378999999998853
No 103
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=21.82 E-value=68 Score=27.49 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=27.7
Q ss_pred CeEEEecc-CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCc
Q 035663 208 GYFYCLGS-CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSD 257 (297)
Q Consensus 208 G~~Y~l~~-~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~ 257 (297)
+++|.++- ++..+++|...-........+. .+|+.......|+-|+|.
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--EGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-SS--S--EEEECSSCEEEE-SS
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecCC--cceEEEcCCCEEEEECCc
Confidence 99999997 5689999987432222233432 466433445567777754
No 104
>smart00284 OLF Olfactomedin-like domains.
Probab=20.91 E-value=5.3e+02 Score=22.02 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=46.0
Q ss_pred CeEEeCCccccCCeEEEeccC-CcEEEEecCCCCCCceecCCCCC----Ccc-ccCCceeEEeeeCCcEEEEEEEccCCC
Q 035663 196 SAHFYDGRNCCKGYFYCLGSC-NFIFRIRFDHPHAPTAEAMPFKP----HEY-CCNARYNYLVELNSDLFIVSRFLIPHK 269 (297)
Q Consensus 196 d~v~~~~~~~~~G~~Y~l~~~-g~i~~~d~~~~~~~~~~~~p~~~----~~~-~~~~~~~~LVes~G~LllV~~~~~~~~ 269 (297)
.-|.+| |.||.--.. ..|+.+|+..+.......+|... ..+ ..+....-|.--+.-|.+|-.....
T Consensus 78 G~VVYn------gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-- 149 (255)
T smart00284 78 GVVVYN------GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-- 149 (255)
T ss_pred cEEEEC------ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC--
Confidence 667888 999986543 48999999988765323444310 011 1122334444444557776665542
Q ss_pred CCCCCceeeEEEEEEECCC
Q 035663 270 SYPCELTCAFIVCKLDLET 288 (297)
Q Consensus 270 ~~~~~~~~~~~V~~ld~~~ 288 (297)
...+.|-|||.++
T Consensus 150 ------~g~ivvSkLnp~t 162 (255)
T smart00284 150 ------AGKIVISKLNPAT 162 (255)
T ss_pred ------CCCEEEEeeCccc
Confidence 3556677777653
No 105
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.62 E-value=2.1e+02 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCCCe---ecCCC
Q 035663 114 ETQNMFLLHPFTRSQ---VKLPP 133 (297)
Q Consensus 114 ~~~~~~l~NP~T~~~---i~LP~ 133 (297)
..+.++-+||.||+. +.||-
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCC
Confidence 357899999999985 67883
No 106
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.61 E-value=2.6e+02 Score=23.74 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCeEEEeccCC-cEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEcc
Q 035663 207 KGYFYCLGSCN-FIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLI 266 (297)
Q Consensus 207 ~G~~Y~l~~~g-~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~ 266 (297)
.|.+|+.+.+| .|..+|+..+.....+.+|.+ ....+.++--+=+++.|..-.+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~------qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP------QITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC------ceEEEEecCCCccEEEEEehhc
Confidence 49999988865 899999998876654556642 1234555555545666665544
No 107
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=20.42 E-value=6.9e+02 Score=23.99 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCeEEEEecCC-CceEeeccC-----ccccc---CCc------CeEEeCCccccCCeEEEeccC----C--------cEE
Q 035663 168 SSKLAFCRPGD-RNWTSIVHD-----QYIRF---TNT------SAHFYDGRNCCKGYFYCLGSC----N--------FIF 220 (297)
Q Consensus 168 ~~~l~~~~~g~-~~W~~~~~~-----~~~~~---~~~------d~v~~~~~~~~~G~~Y~l~~~----g--------~i~ 220 (297)
.+.++++++.| ..|+.+..+ ..... ..+ |+.+++ ||||++-.+ + .|.
T Consensus 52 fpGl~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~y~d------Gkfwl~ytdvk~~~g~~k~~~nyl~ 125 (549)
T COG3507 52 FPGLAIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLSYHD------GKFWLYYTDVKRSGGPYKNAGNYLV 125 (549)
T ss_pred cCceeeeccccccCcEEecccccCcchhhhhcccCCCCceeccceecCC------CcEEEEEecccccCCcccccccEEE
Confidence 34588888886 689998873 11111 111 566777 999987521 1 233
Q ss_pred EEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccC
Q 035663 221 RIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIP 267 (297)
Q Consensus 221 ~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~ 267 (297)
.-+...+.|...+.++.. . ...-....+-+|++.||......
T Consensus 126 t~~s~~G~WsDpi~l~~~-~----~iDPslf~D~dGr~wlv~~~w~~ 167 (549)
T COG3507 126 TAESIDGPWSDPIKLNGS-N----AIDPSLFFDKDGRKWLVNGSWDG 167 (549)
T ss_pred EecCCCCCcccceecCCc-C----ccCCceeecCCCCEEEEecccCC
Confidence 323334455543333331 0 11223445666888888776654
No 108
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=20.03 E-value=2.2e+02 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=25.8
Q ss_pred CCceeEEeee-CCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663 245 NARYNYLVEL-NSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 245 ~~~~~~LVes-~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~ 293 (297)
.+..+.++|. +|+|+|+...... .-+||+=......|.+
T Consensus 172 gC~~psv~EWe~gkLlM~~~c~~g----------~rrVYeS~DmG~tWte 211 (310)
T PF13859_consen 172 GCSDPSVVEWEDGKLLMMTACDDG----------RRRVYESGDMGTTWTE 211 (310)
T ss_dssp T-EEEEEEEE-TTEEEEEEE-TTS-------------EEEESSTTSS-EE
T ss_pred CcceEEEEeccCCeeEEEEecccc----------eEEEEEEcccceehhh
Confidence 4678999999 6999999887742 3467777555667876
No 109
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=20.01 E-value=55 Score=22.82 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.7
Q ss_pred EEcCCCCCeecCCCCC
Q 035663 120 LLHPFTRSQVKLPPPP 135 (297)
Q Consensus 120 l~NP~T~~~i~LP~~~ 135 (297)
--||.||+.+.+|.-.
T Consensus 60 grNP~Tge~i~i~a~~ 75 (90)
T PRK10753 60 GRNPQTGKEIKIAAAN 75 (90)
T ss_pred ccCCCCCCEEEEcCCc
Confidence 4799999999998864
Done!