Query 035663
Match_columns 297
No_of_seqs 133 out of 1530
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 08:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 3.7E-10 1.3E-14 71.0 3.5 44 3-50 4-47 (53)
2 3ii7_A Kelch-like protein 7; p 98.8 5.9E-07 2E-11 77.1 20.4 192 72-297 23-234 (306)
3 4asc_A Kelch repeat and BTB do 98.7 3.5E-06 1.2E-10 72.7 22.0 192 73-297 13-230 (315)
4 2woz_A Kelch repeat and BTB do 98.7 5E-06 1.7E-10 71.8 22.8 192 74-297 25-240 (318)
5 2xn4_A Kelch-like protein 2; s 98.7 3E-06 1E-10 72.5 20.8 192 73-297 30-238 (302)
6 2vpj_A Kelch-like protein 12; 98.7 2.9E-06 1E-10 72.5 20.6 191 73-297 31-240 (301)
7 1zgk_A Kelch-like ECH-associat 98.7 2.7E-06 9.3E-11 73.2 20.1 191 73-297 90-296 (308)
8 3ii7_A Kelch-like protein 7; p 98.6 2.9E-06 1E-10 72.7 19.0 190 73-296 70-280 (306)
9 1zgk_A Kelch-like ECH-associat 98.6 3.4E-06 1.2E-10 72.5 19.2 191 73-297 39-249 (308)
10 2xn4_A Kelch-like protein 2; s 98.6 5.6E-06 1.9E-10 70.8 20.1 189 73-295 77-283 (302)
11 2vpj_A Kelch-like protein 12; 98.6 8.2E-06 2.8E-10 69.7 19.6 190 73-296 78-286 (301)
12 4asc_A Kelch repeat and BTB do 98.5 1.8E-05 6.1E-10 68.2 21.1 194 75-294 69-283 (315)
13 2e31_A FBS1, F-box only protei 98.4 1.3E-07 4.4E-12 80.4 4.2 42 5-50 48-90 (297)
14 2woz_A Kelch repeat and BTB do 98.4 2.5E-05 8.4E-10 67.4 17.8 194 75-294 80-293 (318)
15 2uvk_A YJHT; unknown function, 98.2 0.00026 9E-09 61.8 20.7 203 73-297 31-303 (357)
16 2uvk_A YJHT; unknown function, 98.2 0.00024 8.2E-09 62.0 20.2 194 73-296 86-350 (357)
17 3v7d_B Cell division control p 98.0 0.0015 5.1E-08 58.7 21.2 37 8-48 15-51 (464)
18 2ast_B S-phase kinase-associat 97.7 1.3E-05 4.5E-10 69.5 3.3 44 3-50 4-47 (336)
19 2zwa_A Leucine carboxyl methyl 97.5 0.0059 2E-07 58.5 17.8 197 73-295 412-642 (695)
20 3l2o_B F-box only protein 4; s 97.3 4E-05 1.4E-09 64.7 0.8 39 8-50 5-43 (312)
21 2p1m_B Transport inhibitor res 97.2 0.00011 3.9E-09 68.6 2.4 39 4-46 2-41 (594)
22 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.0007 2.4E-08 60.7 3.4 40 6-49 17-56 (445)
23 2zwa_A Leucine carboxyl methyl 96.7 0.045 1.5E-06 52.3 15.6 199 73-288 468-694 (695)
24 1k3i_A Galactose oxidase precu 96.7 0.012 4.2E-07 55.8 11.4 139 75-231 168-328 (656)
25 1p22_A F-BOX/WD-repeat protein 96.4 0.0011 3.6E-08 59.4 2.0 39 8-50 11-53 (435)
26 1k3i_A Galactose oxidase precu 96.2 0.014 4.8E-07 55.3 8.6 105 170-294 220-329 (656)
27 3ogk_B Coronatine-insensitive 95.9 0.0024 8.2E-08 59.6 2.0 39 8-49 13-51 (592)
28 3dsm_A Uncharacterized protein 56.1 86 0.0029 25.9 17.1 133 73-230 64-216 (328)
29 3vgz_A Uncharacterized protein 55.4 84 0.0029 25.6 20.6 162 73-265 164-334 (353)
30 2z2n_A Virginiamycin B lyase; 52.1 86 0.0029 24.8 16.0 131 74-227 163-296 (299)
31 3dsm_A Uncharacterized protein 52.1 1E+02 0.0034 25.5 15.6 138 72-230 16-165 (328)
32 3q7m_A Lipoprotein YFGL, BAMB; 48.3 1.2E+02 0.0041 25.3 14.0 98 102-229 238-340 (376)
33 4aez_A CDC20, WD repeat-contai 43.8 1.5E+02 0.005 25.0 14.6 101 103-227 103-206 (401)
34 3lrv_A PRE-mRNA-splicing facto 41.8 1.4E+02 0.0049 24.4 20.0 155 103-293 138-299 (343)
35 3jrp_A Fusion protein of prote 40.9 1.5E+02 0.005 24.2 13.2 68 157-228 69-136 (379)
36 3hfq_A Uncharacterized protein 40.7 1.5E+02 0.0051 24.2 14.1 111 101-225 48-170 (347)
37 3odt_A Protein DOA1; ubiquitin 40.0 1.4E+02 0.0047 23.6 14.2 104 101-230 193-300 (313)
38 3jro_A Fusion protein of prote 38.7 2.5E+02 0.0087 26.3 12.7 67 157-227 67-133 (753)
39 3sjl_D Methylamine dehydrogena 38.2 1.1E+02 0.0039 26.5 7.9 82 207-291 237-323 (386)
40 2dk7_A Transcription elongatio 37.6 17 0.00059 23.4 1.9 27 104-133 21-48 (73)
41 2biw_A Apocarotenoid-cleaving 36.5 2.1E+02 0.0072 25.6 9.7 26 195-226 136-161 (490)
42 1ri6_A Putative isomerase YBHE 36.2 1.7E+02 0.0057 23.5 14.2 111 101-226 137-262 (343)
43 2be1_A Serine/threonine-protei 35.2 1.2E+02 0.0039 25.9 7.3 62 167-228 65-132 (339)
44 3sfz_A APAF-1, apoptotic pepti 33.4 3.7E+02 0.013 26.7 14.5 104 101-227 666-775 (1249)
45 2hqs_A Protein TOLB; TOLB, PAL 32.1 2.4E+02 0.0082 24.1 19.6 107 101-228 187-302 (415)
46 4aez_A CDC20, WD repeat-contai 32.1 2.3E+02 0.0077 23.8 14.5 97 113-228 236-338 (401)
47 2jxw_A WW domain-binding prote 29.8 29 0.001 22.3 2.1 30 101-133 3-33 (75)
48 2xzh_A Clathrin heavy chain 1; 28.3 2.7E+02 0.0091 24.0 8.2 66 158-229 270-335 (365)
49 2ysh_A GAS-7, growth-arrest-sp 28.2 61 0.0021 17.7 3.0 23 103-128 10-32 (40)
50 1e0l_A Formin binding protein; 27.8 62 0.0021 17.4 2.9 28 102-132 5-33 (37)
51 1rwi_B Serine/threonine-protei 27.7 2.1E+02 0.0072 22.1 18.1 107 101-228 75-182 (270)
52 3odt_A Protein DOA1; ubiquitin 27.7 2.2E+02 0.0076 22.3 9.2 94 73-183 205-301 (313)
53 1pgu_A Actin interacting prote 26.8 3.3E+02 0.011 24.0 14.3 131 73-226 467-614 (615)
54 1gxr_A ESG1, transducin-like e 26.3 2.4E+02 0.0083 22.3 14.5 125 73-224 205-335 (337)
55 3scy_A Hypothetical bacterial 26.3 2.7E+02 0.0091 22.8 12.0 107 167-294 231-345 (361)
56 2lyd_A Decapping protein 1; DC 25.5 53 0.0018 23.9 3.0 21 275-295 34-54 (134)
57 3hxj_A Pyrrolo-quinoline quino 25.2 2.6E+02 0.0089 22.3 7.9 80 162-260 228-310 (330)
58 2p4o_A Hypothetical protein; p 23.2 2E+02 0.0067 23.3 6.7 20 208-227 43-63 (306)
59 1q67_A Decapping protein invol 22.8 62 0.0021 25.6 3.0 21 275-295 40-60 (231)
60 1e0m_A Wwprototype; SH3 protot 22.4 69 0.0024 17.0 2.5 23 103-128 6-28 (37)
61 2z2n_A Virginiamycin B lyase; 21.7 2.9E+02 0.0098 21.5 16.3 130 74-225 121-254 (299)
62 2ysi_A Transcription elongatio 21.7 1E+02 0.0035 17.0 3.1 24 102-128 9-32 (40)
63 1r5m_A SIR4-interacting protei 21.4 3.4E+02 0.012 22.3 16.6 103 101-228 215-321 (425)
64 1o6w_A PRP40, PRE-mRNA process 20.8 95 0.0033 19.6 3.3 30 102-134 42-72 (75)
65 3mmy_A MRNA export factor; mRN 20.1 3.4E+02 0.012 21.7 12.4 131 73-227 64-200 (368)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.96 E-value=3.7e-10 Score=71.01 Aligned_cols=44 Identities=36% Similarity=0.605 Sum_probs=36.9
Q ss_pred CCCCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 3 PQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 3 ~~~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
.+...|+.||+|++..|+.+| +..|+.+ ++.|||.|+.++.++.
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L-~~~dl~~---~~~Vck~w~~~~~~~~ 47 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASDES 47 (53)
T ss_dssp -----CCSSCHHHHHHHHTTS-CGGGHHH---HHTTCHHHHHHHTCGG
T ss_pred CCCCCHHHCCHHHHHHHHHcC-CHHHHHH---HHHHHHHHHHHhCChH
Confidence 345789999999999999999 9999999 9999999999997654
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.83 E-value=5.9e-07 Score=77.15 Aligned_cols=192 Identities=18% Similarity=0.127 Sum_probs=121.5
Q ss_pred CcceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC--CCccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 72 RQSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD--ETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~--~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
......||+.+++|..+. +|. +.....+ ..+|.|++.-+.+ ....+..+||.|++|..+|+++..... ..
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~ 96 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-----LA 96 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-----CE
T ss_pred CceEEEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-----ee
Confidence 356778999999999874 333 2222333 5577666632222 126789999999999998876643211 11
Q ss_pred EEEecCCCCCCEEEEEEeC------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc------
Q 035663 148 VITSTSPLDPDCLVLASLY------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS------ 215 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~------ 215 (297)
++. . ++.+ .++.+ ....+..|++..++|+.+...+..+... .++.++ |++|++..
T Consensus 97 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 97 ACA-A----EGKI-YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEAN------GLIYVCGGSLGNNV 163 (306)
T ss_dssp EEE-E----TTEE-EEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCEESCTT
T ss_pred EEE-E----CCEE-EEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEEC------CEEEEECCCCCCCC
Confidence 221 1 2222 22222 1246889999999999987652111111 456677 99999863
Q ss_pred ----CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCce
Q 035663 216 ----CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKW 291 (297)
Q Consensus 216 ----~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W 291 (297)
...+.+||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEA-------RKNHGLVFVKDKIFAVGGQNGL--------GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCEETT--------EEBCCEEEEETTTTEE
T ss_pred cccccceEEEeCCCCCeEEECCCccch-------hhcceEEEECCEEEEEeCCCCC--------CCCceEEEeeCCCCcE
Confidence 23589999999988752234431 1234556668999998776532 2334688899999999
Q ss_pred eecccC
Q 035663 292 IMVNNI 297 (297)
Q Consensus 292 ~~v~~L 297 (297)
.++..+
T Consensus 229 ~~~~~~ 234 (306)
T 3ii7_A 229 KMVSPM 234 (306)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998653
No 3
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.73 E-value=3.5e-06 Score=72.69 Aligned_cols=192 Identities=9% Similarity=0.090 Sum_probs=120.3
Q ss_pred cceEEEecCCCcEEecCCCCC-CCCceEE-eeCCeEEEEeec----CC-C----ccEEEEcCCCCCeecCCCCCCCCCce
Q 035663 73 QSCTFFNPKTKKFREIPLPEV-KGRWVSC-SSHGWLLTVSCL----DE-T----QNMFLLHPFTRSQVKLPPPPPGTQLQ 141 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~-~~~~~~~-s~~Gwll~~~~~----~~-~----~~~~l~NP~T~~~i~LP~~~~~~~~~ 141 (297)
.....||+.+++|...++|.+ +.....+ ..+|-+++.-+. +. . ..++.+||.|++|..+|+++.....
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~- 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL- 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-
Confidence 456789999999987666542 2222223 446655543222 11 1 3488999999999999887643211
Q ss_pred eecCceEEEecCCCCCCEEEEEEeC--------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEe
Q 035663 142 FLNGLRVITSTSPLDPDCLVLASLY--------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCL 213 (297)
Q Consensus 142 ~~~~~~~~ls~~p~~~~~~Vv~~~~--------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l 213 (297)
..++. . ++.+.+ +.+ ....+..|.+..++|+.+...+..+... .++.++ |++|++
T Consensus 92 ----~~~~~-~----~~~lyv-~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~ 154 (315)
T 4asc_A 92 ----FGLGE-A----LNSIYV-VGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSHM------DLVYVI 154 (315)
T ss_dssp ----CEEEE-E----TTEEEE-ECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEE
T ss_pred ----eeEEE-E----CCEEEE-EeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEEC------CEEEEE
Confidence 01221 1 222222 222 1246788999999999987651111111 456677 999998
Q ss_pred ccC-------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEEC
Q 035663 214 GSC-------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDL 286 (297)
Q Consensus 214 ~~~-------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~ 286 (297)
... ..+.+||+..+.|....++|.+ ......+..+|+|++++-.... ...-.++.+|.
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~ 219 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-------RSLFGATVHDGRIIVAAGVTDT--------GLTSSAEVYSI 219 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEEEEECSS--------SEEEEEEEEET
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCc-------hhceEEEEECCEEEEEeccCCC--------CccceEEEEEC
Confidence 642 3699999999988752234431 1233456668999999887642 23457888999
Q ss_pred CCCceeecccC
Q 035663 287 ETEKWIMVNNI 297 (297)
Q Consensus 287 ~~~~W~~v~~L 297 (297)
++++|.++..+
T Consensus 220 ~~~~W~~~~~~ 230 (315)
T 4asc_A 220 TDNKWAPFEAF 230 (315)
T ss_dssp TTTEEEEECCC
T ss_pred CCCeEEECCCC
Confidence 99999998753
No 4
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.72 E-value=5e-06 Score=71.78 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=118.3
Q ss_pred ceEEEecCCCcEEecCCCCC-CCCceEE-eeCCeEEEEeecC--CC-------ccEEEEcCCCCCeecCCCCCCCCCcee
Q 035663 74 SCTFFNPKTKKFREIPLPEV-KGRWVSC-SSHGWLLTVSCLD--ET-------QNMFLLHPFTRSQVKLPPPPPGTQLQF 142 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~-s~~Gwll~~~~~~--~~-------~~~~l~NP~T~~~i~LP~~~~~~~~~~ 142 (297)
....||+.+++|...++|.+ +.....+ ..+|.|++.-+.. .. ..++.+||.|++|..+|+.+.....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-- 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-- 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS--
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc--
Confidence 46789999999987655432 2222333 4566555533211 11 2388999999999999887654211
Q ss_pred ecCceEEEecCCCCCCEEEEEEe-C--C---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC
Q 035663 143 LNGLRVITSTSPLDPDCLVLASL-Y--V---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC 216 (297)
Q Consensus 143 ~~~~~~~ls~~p~~~~~~Vv~~~-~--~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~ 216 (297)
..++. . ++.+.+.-. . . ...+..|++..++|+.+...+..+... .++.++ |++|++...
T Consensus 103 ---~~~~~-~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~ 167 (318)
T 2woz_A 103 ---FGLGE-V----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVISHN------GMIYCLGGK 167 (318)
T ss_dssp ---CEEEE-E----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEEET------TEEEEECCE
T ss_pred ---cceEE-E----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEEEC------CEEEEEcCC
Confidence 11222 1 223322221 1 1 135678999999999987651111111 455577 999998631
Q ss_pred -------CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCC
Q 035663 217 -------NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETE 289 (297)
Q Consensus 217 -------g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~ 289 (297)
..+.+||+..+.|....++|.+ ......+..+|+|++++-.... ...-.|+.+|.+++
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTP-------RSMFGVAIHKGKIVIAGGVTED--------GLSASVEAFDLKTN 232 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEEEEEETT--------EEEEEEEEEETTTC
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCC-------cccceEEEECCEEEEEcCcCCC--------CccceEEEEECCCC
Confidence 2699999999988752234431 1223445678999999877642 34457888899999
Q ss_pred ceeecccC
Q 035663 290 KWIMVNNI 297 (297)
Q Consensus 290 ~W~~v~~L 297 (297)
+|.++..+
T Consensus 233 ~W~~~~~~ 240 (318)
T 2woz_A 233 KWEVMTEF 240 (318)
T ss_dssp CEEECCCC
T ss_pred eEEECCCC
Confidence 99998753
No 5
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.71 E-value=3e-06 Score=72.54 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=118.6
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
.....||+.+++|..+. +|.. .....+ ..+|-+++.-+.+. ...+..+||.|++|..+|+++..... ..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~ 103 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSR-RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-----LG 103 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-----CE
T ss_pred CcEEEEcCcCCcEeEcccCCcc-cccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-----eE
Confidence 45678999999998873 4432 222223 45776666322222 25799999999999999887644211 11
Q ss_pred EEEecCCCCCCEEEEEEe-CC---CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc--------
Q 035663 148 VITSTSPLDPDCLVLASL-YV---SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-------- 215 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~-~~---~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-------- 215 (297)
++. . ++.+.+.-. .. ...+..|++..++|+.+...+..+... .++.++ |++|++..
T Consensus 104 ~~~-~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 104 AAV-L----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVVG------GLLYAVGGYDVASRQC 171 (302)
T ss_dssp EEE-E----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCEETTTTEE
T ss_pred EEE-E----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEEC------CEEEEEeCCCCCCCcc
Confidence 222 1 223322211 11 135678999999999987652111111 456677 99999853
Q ss_pred CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeecc
Q 035663 216 CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 216 ~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~ 295 (297)
...+..||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|.++.
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTR-------RSGAGVGVLNNLLYAVGGHDGP--------LVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBSSS--------SBCCCEEEEETTTTEEEEEC
T ss_pred ccEEEEEeCCCCcEEECCCCccc-------cccccEEEECCEEEEECCCCCC--------cccceEEEEeCCCCCEeeCC
Confidence 23699999999988753234431 1223456668999998765431 22335888899999999987
Q ss_pred cC
Q 035663 296 NI 297 (297)
Q Consensus 296 ~L 297 (297)
.+
T Consensus 237 ~~ 238 (302)
T 2xn4_A 237 DM 238 (302)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.71 E-value=2.9e-06 Score=72.53 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=119.5
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCC---eecCCCCCCCCCceeec
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRS---QVKLPPPPPGTQLQFLN 144 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~---~i~LP~~~~~~~~~~~~ 144 (297)
.....||+.+++|..++ +|. +...... ..+|-+++.-+.+. ...++.+||.|++ |..+|+++.....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~---- 105 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL---- 105 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS----
T ss_pred eEEEEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc----
Confidence 45678999999998875 343 2222233 55676666322221 2579999999999 9999887644221
Q ss_pred CceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc----
Q 035663 145 GLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS---- 215 (297)
Q Consensus 145 ~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~---- 215 (297)
..++. . ++.+ .++.+ ....+..|++..++|+.++..+..+... ..+.++ |++|++..
T Consensus 106 -~~~~~-~----~~~l-yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~ 171 (301)
T 2vpj_A 106 -AGATT-L----GDMI-YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVAS------GVIYCLGGYDGL 171 (301)
T ss_dssp -CEEEE-E----TTEE-EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEET------TEEEEECCBCSS
T ss_pred -eeEEE-E----CCEE-EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEEC------CEEEEECCCCCC
Confidence 11222 1 2222 22222 1346889999999999987652111111 455667 99999863
Q ss_pred --CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663 216 --CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 216 --~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~ 293 (297)
...+.+||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|.+
T Consensus 172 ~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNVTPMATK-------RSGAGVALLNDHIYVVGGFDGT--------AHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCcEEeCCCCCcc-------cccceEEEECCEEEEEeCCCCC--------cccceEEEEeCCCCcEEE
Confidence 23799999999988752234431 1234456668999988765432 223468888999999999
Q ss_pred cccC
Q 035663 294 VNNI 297 (297)
Q Consensus 294 v~~L 297 (297)
+..+
T Consensus 237 ~~~~ 240 (301)
T 2vpj_A 237 VTSM 240 (301)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.69 E-value=2.7e-06 Score=73.15 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=119.1
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
.....||+.+++|..++ +|. +...... ..+|-+++.-+.+. ...+..+||-|.+|..+++++..... ..
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~ 163 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSV-PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-----VG 163 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-----CE
T ss_pred ceEEEECCCCCeEeECCCCCc-CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-----eE
Confidence 35677999999998874 333 2222233 55776666322221 25789999999999999876643211 11
Q ss_pred EEEecCCCCCCEEEEEEeCC-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC------
Q 035663 148 VITSTSPLDPDCLVLASLYV-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC------ 216 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------ 216 (297)
++. . ++.+. ++.+. ...+..|++..++|+.+...+..+... .++.++ |++|++...
T Consensus 164 ~~~-~----~~~iy-v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~~ 230 (308)
T 1zgk_A 164 VAV-L----NRLLY-AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVLH------NCIYAAGGYDGQDQL 230 (308)
T ss_dssp EEE-E----TTEEE-EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEECCBCSSSBC
T ss_pred EEE-E----CCEEE-EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEEC------CEEEEEeCCCCCCcc
Confidence 222 1 22222 22221 356889999999999987652111111 456667 999998732
Q ss_pred CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 217 NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 217 g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
..+.+||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|.++.+
T Consensus 231 ~~v~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 231 NSVERYDVETETWTFVAPMKHR-------RSALGITVHQGRIYVLGGYDGH--------TFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSS--------CBCCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCcEEECCCCCCC-------ccceEEEEECCEEEEEcCcCCC--------cccceEEEEcCCCCEEeecCC
Confidence 3699999999988752233331 1223455568999988765431 233478889999999998865
Q ss_pred C
Q 035663 297 I 297 (297)
Q Consensus 297 L 297 (297)
+
T Consensus 296 ~ 296 (308)
T 1zgk_A 296 M 296 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.65 E-value=2.9e-06 Score=72.74 Aligned_cols=190 Identities=12% Similarity=0.109 Sum_probs=118.9
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC-C---CccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD-E---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL 146 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~-~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~ 146 (297)
.....||+.+++|..+. +|. +...... ..+|-+++.-+.+ . ...+..+||.|.+|..+|+++..... .
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~ 143 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPT-PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-----H 143 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSS-CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-----C
T ss_pred ceEEEEeCCCCeEEECCCCCc-cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-----e
Confidence 45667999999998763 443 2222233 5577666633222 1 25799999999999999887644211 1
Q ss_pred eEEEecCCCCCCEEEEEEeC-----C----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc--
Q 035663 147 RVITSTSPLDPDCLVLASLY-----V----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-- 215 (297)
Q Consensus 147 ~~~ls~~p~~~~~~Vv~~~~-----~----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-- 215 (297)
.++. . ++.+ .++.+ . ...+..|++..++|+.++.....+.. -.++.++ |++|++..
T Consensus 144 ~~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~------~~i~v~GG~~ 210 (306)
T 3ii7_A 144 GMVE-A----NGLI-YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFVK------DKIFAVGGQN 210 (306)
T ss_dssp EEEE-E----TTEE-EEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEET------TEEEEECCEE
T ss_pred EEEE-E----CCEE-EEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEEC------CEEEEEeCCC
Confidence 1221 1 2222 22221 1 35678999999999999865211111 1556667 99999853
Q ss_pred ----CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCce
Q 035663 216 ----CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKW 291 (297)
Q Consensus 216 ----~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W 291 (297)
...+.+||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWK-------GVTVKCAAVGSIVYVLAGFQGV--------GRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCC-------BSCCEEEEETTEEEEEECBCSS--------SBCCEEEEEETTTTEE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCC-------ccceeEEEECCEEEEEeCcCCC--------eeeeeEEEEcCCCCeE
Confidence 13799999999988752233431 1223455568999998876532 2233789999999999
Q ss_pred eeccc
Q 035663 292 IMVNN 296 (297)
Q Consensus 292 ~~v~~ 296 (297)
.++..
T Consensus 276 ~~~~~ 280 (306)
T 3ii7_A 276 VANSK 280 (306)
T ss_dssp EEEEE
T ss_pred EeCCC
Confidence 98764
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.64 E-value=3.4e-06 Score=72.53 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=118.2
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeec----CC---CccEEEEcCCCCCeecCCCCCCCCCceee
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCL----DE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFL 143 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~----~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~ 143 (297)
.....||+.+++|..+. +|. +...... ..+|.|++.-+. +. ...++.+||.|++|..+|+++.....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--- 114 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR--- 114 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT---
T ss_pred ceEEEEcCCCCeEeECCCCCc-ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc---
Confidence 45778999999999874 333 2222223 456666653222 11 25789999999999999887644211
Q ss_pred cCceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEecc---
Q 035663 144 NGLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS--- 215 (297)
Q Consensus 144 ~~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~--- 215 (297)
..++. . ++.+ .++.+ ....+..|.+..++|+.+...+..+... ..+.++ |++|++..
T Consensus 115 --~~~~~-~----~~~i-yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~ 179 (308)
T 1zgk_A 115 --IGVGV-I----DGHI-YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLN------RLLYAVGGFDG 179 (308)
T ss_dssp --CEEEE-E----TTEE-EEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEECCBCS
T ss_pred --cEEEE-E----CCEE-EEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEEC------CEEEEEeCCCC
Confidence 11222 1 2222 22222 1346789999999999987651111111 455667 99999863
Q ss_pred ---CCcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCcee
Q 035663 216 ---CNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWI 292 (297)
Q Consensus 216 ---~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~ 292 (297)
...+..||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|.
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVCVLHNCIYAAGGYDGQ--------DQLNSVERYDVETETWT 244 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCc-------cccceEEEECCEEEEEeCCCCC--------CccceEEEEeCCCCcEE
Confidence 23699999999988752233331 1223445568999988765432 23456888999999999
Q ss_pred ecccC
Q 035663 293 MVNNI 297 (297)
Q Consensus 293 ~v~~L 297 (297)
++..+
T Consensus 245 ~~~~~ 249 (308)
T 1zgk_A 245 FVAPM 249 (308)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98753
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.63 E-value=5.6e-06 Score=70.84 Aligned_cols=189 Identities=14% Similarity=0.146 Sum_probs=117.9
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecCCC---ccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLDET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
.....||+.+++|..++ +|. +...... ..+|.+++.-+.+.. ..+..+||-|.+|..+|+++..... ..
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~~ 150 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRD-RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-----VG 150 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-----CE
T ss_pred cceEEECCCCCceeeCCCCCc-cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-----ce
Confidence 45678999999998874 333 2222223 457766663333322 5789999999999999877644211 11
Q ss_pred EEEecCCCCCCEEEEEEeC--C-----CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC----
Q 035663 148 VITSTSPLDPDCLVLASLY--V-----SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC---- 216 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~--~-----~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~---- 216 (297)
++. . ++.+ .++.+ . ...+..|++..++|+.+...+..+... .++.++ |++|++...
T Consensus 151 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 151 VGV-V----GGLL-YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLN------NLLYAVGGHDGPL 217 (302)
T ss_dssp EEE-E----TTEE-EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEECCBSSSS
T ss_pred EEE-E----CCEE-EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEEEC------CEEEEECCCCCCc
Confidence 222 1 2222 22221 1 346789999999999987652111111 556677 999999641
Q ss_pred --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663 217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV 294 (297)
Q Consensus 217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v 294 (297)
..+..||+..+.|.....+|.+ ......+..+|+|++++-.... ...-.|+.+|.++++|.++
T Consensus 218 ~~~~~~~yd~~~~~W~~~~~~~~~-------r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 218 VRKSVEVYDPTTNAWRQVADMNMC-------RRNAGVCAVNGLLYVVGGDDGS--------CNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEECCBCSS--------SBCCCEEEEETTTTEEEEC
T ss_pred ccceEEEEeCCCCCEeeCCCCCCc-------cccCeEEEECCEEEEECCcCCC--------cccccEEEEcCCCCeEEEC
Confidence 3799999999988752233331 1223456668999988765432 2234688889999999988
Q ss_pred c
Q 035663 295 N 295 (297)
Q Consensus 295 ~ 295 (297)
.
T Consensus 283 ~ 283 (302)
T 2xn4_A 283 S 283 (302)
T ss_dssp S
T ss_pred C
Confidence 5
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.57 E-value=8.2e-06 Score=69.69 Aligned_cols=190 Identities=10% Similarity=0.107 Sum_probs=117.9
Q ss_pred cceEEEecCCCc---EEecC-CCCCCCCceEE-eeCCeEEEEeecCC---CccEEEEcCCCCCeecCCCCCCCCCceeec
Q 035663 73 QSCTFFNPKTKK---FREIP-LPEVKGRWVSC-SSHGWLLTVSCLDE---TQNMFLLHPFTRSQVKLPPPPPGTQLQFLN 144 (297)
Q Consensus 73 ~~~~~~~~~~~~---~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~~---~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~ 144 (297)
.....||+.+++ |..+. +|. +.....+ ..+|.+++.-+.+. ...+..+||.|.+|..+|+.+.....
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---- 152 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNV-RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG---- 152 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS----
T ss_pred ceEEEEECCCCCCCeeEECCCCCC-CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc----
Confidence 456789999988 88773 343 2222333 55777666332222 25799999999999988776543211
Q ss_pred CceEEEecCCCCCCEEEEEEeC-----CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC---
Q 035663 145 GLRVITSTSPLDPDCLVLASLY-----VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC--- 216 (297)
Q Consensus 145 ~~~~~ls~~p~~~~~~Vv~~~~-----~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~--- 216 (297)
..++. . ++.+ .++.+ ....+..|++..++|+.+...+..+. .-.++.++ |++|++...
T Consensus 153 -~~~~~-~----~~~i-yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~------~~i~v~GG~~~~ 218 (301)
T 2vpj_A 153 -AGLVV-A----SGVI-YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVALLN------DHIYVVGGFDGT 218 (301)
T ss_dssp -CEEEE-E----TTEE-EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEET------TEEEEECCBCSS
T ss_pred -ceEEE-E----CCEE-EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEEEC------CEEEEEeCCCCC
Confidence 11222 1 2222 22222 13568899999999999876521111 11556677 999998642
Q ss_pred ---CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663 217 ---NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 217 ---g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~ 293 (297)
..+..||+..+.|.....+|.+. .....+..+|+|++++-... ....-.|+.+|.++++|.+
T Consensus 219 ~~~~~v~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~i~v~GG~~~--------~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSWTTVTSMTTPR-------CYVGATVLRGRLYAIAGYDG--------NSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEETTEEEEECCBCS--------SSBEEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCcEEECCCCCCcc-------cceeEEEECCEEEEEcCcCC--------CcccccEEEEcCCCCeEEE
Confidence 36999999999887522334311 12334556899888876442 1344578999999999998
Q ss_pred ccc
Q 035663 294 VNN 296 (297)
Q Consensus 294 v~~ 296 (297)
+.+
T Consensus 284 ~~~ 286 (301)
T 2vpj_A 284 VTS 286 (301)
T ss_dssp EEE
T ss_pred cCC
Confidence 865
No 12
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.55 E-value=1.8e-05 Score=68.17 Aligned_cols=194 Identities=16% Similarity=0.119 Sum_probs=117.9
Q ss_pred eEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC----C--CccEEEEcCCCCCeecCCCCCCCCCceeecCc
Q 035663 75 CTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD----E--TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGL 146 (297)
Q Consensus 75 ~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~----~--~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~ 146 (297)
...||+.+++|..+. +|. +...... ..+|-+++.-+.+ . ...+..+||.|++|..+++++..... .
T Consensus 69 ~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-----~ 142 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPS-PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-----H 142 (315)
T ss_dssp EEEEETTTTEEEECCCBSS-CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-----C
T ss_pred eEEecCCCCeEEECCCCCc-chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-----e
Confidence 567999999998763 332 1212222 4567666533221 1 25799999999999999886644211 1
Q ss_pred eEEEecCCCCCCEEEEEEeCC------CCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC----
Q 035663 147 RVITSTSPLDPDCLVLASLYV------SSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC---- 216 (297)
Q Consensus 147 ~~~ls~~p~~~~~~Vv~~~~~------~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~---- 216 (297)
.++. . ++. +.++.+. ...+..|++..++|+.++..+..+... .++.++ |++|++...
T Consensus 143 ~~~~-~----~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~ 209 (315)
T 4asc_A 143 TVLS-H----MDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVHD------GRIIVAAGVTDTG 209 (315)
T ss_dssp EEEE-E----TTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET------TEEEEEEEECSSS
T ss_pred eEEE-E----CCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-EEEEEC------CEEEEEeccCCCC
Confidence 1222 1 222 2222221 246889999999999988652111111 456667 999998641
Q ss_pred --CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCCC-CceeeEEEEEEECCCCceee
Q 035663 217 --NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPC-ELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 217 --g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~-~~~~~~~V~~ld~~~~~W~~ 293 (297)
..+.+||+..+.|.....+|.+ ......+..+|+|++++-.......... .....-.||.+|.++++|.+
T Consensus 210 ~~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAPFEAFPQE-------RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEEEEEETTTTEEEEECCCSSC-------CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred ccceEEEEECCCCeEEECCCCCCc-------ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 2689999999988753234431 1234566778999999877532000000 01334679999999999998
Q ss_pred c
Q 035663 294 V 294 (297)
Q Consensus 294 v 294 (297)
+
T Consensus 283 ~ 283 (315)
T 4asc_A 283 V 283 (315)
T ss_dssp E
T ss_pred h
Confidence 7
No 13
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.43 E-value=1.3e-07 Score=80.44 Aligned_cols=42 Identities=24% Similarity=0.557 Sum_probs=39.1
Q ss_pred CCCCCCCcHHHHHHHHhhcCCchhhh-ccccccccChhHHHhhhhhh
Q 035663 5 QLSWSSLPDELLSVIIQKLIDSDDIL-NCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 5 ~~~ws~LP~dll~~I~~rL~~~~d~~-r~~~~~~VCk~Wr~~~~~~~ 50 (297)
......||+|||.+||.+| |..+++ | +++|||.||+++.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-p~~~L~~r---~~~VCk~Wr~l~~~~~ 90 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-PATELVQA---CRLVCLRWKELVDGAP 90 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-CHHHHHHT---GGGTCHHHHHHHTSHH
T ss_pred ccChhhCCHHHHHHHHHcC-CHHHHHHH---HHHHhHHHHHHhcChH
Confidence 4567899999999999999 999999 9 9999999999999876
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.38 E-value=2.5e-05 Score=67.38 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=116.5
Q ss_pred eEEEecCCCcEEecC-CCCCCCCceEE-eeCCeEEEEeecC--CC---ccEEEEcCCCCCeecCCCCCCCCCceeecCce
Q 035663 75 CTFFNPKTKKFREIP-LPEVKGRWVSC-SSHGWLLTVSCLD--ET---QNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 75 ~~~~~~~~~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~~--~~---~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~ 147 (297)
...||+.+++|..+. +|.. ...... ..+|.+++.-+.+ .. ..+..+||-|.+|..+++++..... ..
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~ 153 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSA-RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-----HN 153 (318)
T ss_dssp EEEEETTTTEEEECSCBSSC-BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-----CE
T ss_pred EEEEeCCCCcEEECCCCCcc-ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-----cE
Confidence 567999999998773 3432 222223 5577666643332 11 5789999999999998876543210 11
Q ss_pred EEEecCCCCCCEEEEEEeC------CCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccC-----
Q 035663 148 VITSTSPLDPDCLVLASLY------VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSC----- 216 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~----- 216 (297)
++. . ++.+ .++.+ ....+..|++..++|+.++.....+... .++.++ |++|++...
T Consensus 154 ~~~-~----~~~i-yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~------~~iyv~GG~~~~~~ 220 (318)
T 2woz_A 154 VIS-H----NGMI-YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAIHK------GKIVIAGGVTEDGL 220 (318)
T ss_dssp EEE-E----TTEE-EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET------TEEEEEEEEETTEE
T ss_pred EEE-E----CCEE-EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eEEEEC------CEEEEEcCcCCCCc
Confidence 222 1 2222 22222 1346889999999999987652111111 456677 999998631
Q ss_pred -CcEEEEecCCCCCCceecCCCCCCccccCCceeEEeeeCCcEEEEEEEccCCCCCC-CCceeeEEEEEEECCCCceeec
Q 035663 217 -NFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYP-CELTCAFIVCKLDLETEKWIMV 294 (297)
Q Consensus 217 -g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~-~~~~~~~~V~~ld~~~~~W~~v 294 (297)
..+.+||+..+.|.....+|.+ .....++..+|+|++++-......... ......-.||.+|.++++|.++
T Consensus 221 ~~~~~~yd~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 221 SASVEAFDLKTNKWEVMTEFPQE-------RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEEEETTTCCEEECCCCSSC-------CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred cceEEEEECCCCeEEECCCCCCc-------ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3688999999998752234431 123456677899998876543210000 0012345789999999999986
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.21 E-value=0.00026 Score=61.79 Aligned_cols=203 Identities=12% Similarity=0.101 Sum_probs=112.5
Q ss_pred cceEEEecCC--CcEEecC-CCCCCCCceEE-eeCCeEEEEeec-C---C----CccEEEEcCCCCCeecCCCCC-CCCC
Q 035663 73 QSCTFFNPKT--KKFREIP-LPEVKGRWVSC-SSHGWLLTVSCL-D---E----TQNMFLLHPFTRSQVKLPPPP-PGTQ 139 (297)
Q Consensus 73 ~~~~~~~~~~--~~~~~~~-~p~~~~~~~~~-s~~Gwll~~~~~-~---~----~~~~~l~NP~T~~~i~LP~~~-~~~~ 139 (297)
.....||+.. ++|..+. +|..+.....+ ..+|-|++.-+. + . ...+..+||.|.+|..+++.. ....
T Consensus 31 ~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~ 110 (357)
T 2uvk_A 31 TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA 110 (357)
T ss_dssp TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS
T ss_pred CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc
Confidence 3567899974 7888763 45212222233 456766553222 1 1 257999999999999998765 2221
Q ss_pred ceeecCceEEEecCCCCCCEEEEEEeCC---------------------------------------CCeEEEEecCCCc
Q 035663 140 LQFLNGLRVITSTSPLDPDCLVLASLYV---------------------------------------SSKLAFCRPGDRN 180 (297)
Q Consensus 140 ~~~~~~~~~~ls~~p~~~~~~Vv~~~~~---------------------------------------~~~l~~~~~g~~~ 180 (297)
. ..++. . ++.+.+ +.+. ...+..|.+..++
T Consensus 111 ~-----~~~~~-~----~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 179 (357)
T 2uvk_A 111 G-----HVTFV-H----NGKAYV-TGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ 179 (357)
T ss_dssp S-----EEEEE-E----TTEEEE-EECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE
T ss_pred c-----ceEEE-E----CCEEEE-EeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc
Confidence 0 11122 1 233322 2221 2578899999999
Q ss_pred eEeeccCcccccCCcCeEEeCCccccCCeEEEecc-------CCcEEEEec--CCCCCCceecCCCCCCccccCCceeEE
Q 035663 181 WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-------CNFIFRIRF--DHPHAPTAEAMPFKPHEYCCNARYNYL 251 (297)
Q Consensus 181 W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-------~g~i~~~d~--~~~~~~~~~~~p~~~~~~~~~~~~~~L 251 (297)
|+.+...+..+.....++..+ |++|++.- ...++.||+ ....|.....+|.+. .......
T Consensus 180 W~~~~~~p~~~~~~~~~~~~~------~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-----~~~~~~~ 248 (357)
T 2uvk_A 180 WSYAGESPWYGTAGAAVVNKG------DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-----GVAGGFA 248 (357)
T ss_dssp EEEEEECSSCCCBSCEEEEET------TEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-----CCBSCEE
T ss_pred EEECCCCCCCCcccccEEEEC------CEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-----ccccceE
Confidence 999876421111111566677 99999853 236888887 556676422233211 1123346
Q ss_pred eeeCCcEEEEEEEccCCC-------C-C-CCCceeeEEEEEEECCCCceeecccC
Q 035663 252 VELNSDLFIVSRFLIPHK-------S-Y-PCELTCAFIVCKLDLETEKWIMVNNI 297 (297)
Q Consensus 252 Ves~G~LllV~~~~~~~~-------~-~-~~~~~~~~~V~~ld~~~~~W~~v~~L 297 (297)
+..+|+|++++-...... . + .........++.+|.++++|.++..+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 303 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence 778899999986643200 0 0 00012235677888889999988653
No 16
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.20 E-value=0.00024 Score=62.05 Aligned_cols=194 Identities=10% Similarity=0.020 Sum_probs=110.5
Q ss_pred cceEEEecCCCcEEecCC-CCCCCCceEE-eeCCeEEEEeecCC------------------------------------
Q 035663 73 QSCTFFNPKTKKFREIPL-PEVKGRWVSC-SSHGWLLTVSCLDE------------------------------------ 114 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-p~~~~~~~~~-s~~Gwll~~~~~~~------------------------------------ 114 (297)
.....||+.+++|..+.. +..+.....+ ..+|-+++.-+.+.
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF 165 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence 356789999999988743 2112223333 56776655332221
Q ss_pred -CccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC------CCCeEEEEec--CCCceEeec
Q 035663 115 -TQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY------VSSKLAFCRP--GDRNWTSIV 185 (297)
Q Consensus 115 -~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~------~~~~l~~~~~--g~~~W~~~~ 185 (297)
...+..+||-|.+|..+++.+...... ..++.. ++.+.+ +.+ ....+..|.. ..+.|+.+.
T Consensus 166 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~----~~~~~~-----~~~iyv-~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~ 235 (357)
T 2uvk_A 166 FNKFLLSFDPSTQQWSYAGESPWYGTAG----AAVVNK-----GDKTWL-INGEAKPGLRTDAVFELDFTGNNLKWNKLA 235 (357)
T ss_dssp CCCEEEEEETTTTEEEEEEECSSCCCBS----CEEEEE-----TTEEEE-ECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred CcccEEEEeCCCCcEEECCCCCCCCccc----ccEEEE-----CCEEEE-EeeecCCCcccCceEEEEecCCCCcEEecC
Confidence 257899999999998876655321110 011211 222222 221 1345666765 788999987
Q ss_pred cCcccc-cCCcCeEEeCCccccCCeEEEeccC-----------------------CcEEEEecCCCCCCceecCCCCCCc
Q 035663 186 HDQYIR-FTNTSAHFYDGRNCCKGYFYCLGSC-----------------------NFIFRIRFDHPHAPTAEAMPFKPHE 241 (297)
Q Consensus 186 ~~~~~~-~~~~d~v~~~~~~~~~G~~Y~l~~~-----------------------g~i~~~d~~~~~~~~~~~~p~~~~~ 241 (297)
.....+ .....++..+ |++|++.-. ..+.+||+....|...-.+|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~------~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-- 307 (357)
T 2uvk_A 236 PVSSPDGVAGGFAGISN------DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR-- 307 (357)
T ss_dssp CSSTTTCCBSCEEEEET------TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC--
T ss_pred CCCCCcccccceEEEEC------CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc--
Confidence 651110 0011366677 999998641 15789999999998633444421
Q ss_pred cccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeeccc
Q 035663 242 YCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMVNN 296 (297)
Q Consensus 242 ~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v~~ 296 (297)
.....+..+|+|++++-.... ....-.|+.++.++++|.+...
T Consensus 308 -----~~~~~~~~~~~i~v~GG~~~~-------~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 308 -----AYGVSLPWNNSLLIIGGETAG-------GKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp -----BSSEEEEETTEEEEEEEECGG-------GCEEEEEEEEEC-CCSCEEEC-
T ss_pred -----ccceeEEeCCEEEEEeeeCCC-------CCEeeeEEEEEEcCcEeEeeec
Confidence 113346678999999988753 2345688889999999988653
No 17
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.97 E-value=0.0015 Score=58.69 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=35.0
Q ss_pred CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhh
Q 035663 8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKD 48 (297)
Q Consensus 8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~ 48 (297)
++.||+|++..|+..| +..|+.+ ++.|||.|+.++.+
T Consensus 15 ~~~lp~~~~~~i~~~l-~~~~l~~---~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYL-QFEDIIN---SLGVSQNWNKIIRK 51 (464)
T ss_dssp HHHSCHHHHHHHHTTS-CHHHHHH---HHTTCHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHHcC
Confidence 6679999999999999 9999999 99999999999876
No 18
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.74 E-value=1.3e-05 Score=69.52 Aligned_cols=44 Identities=36% Similarity=0.605 Sum_probs=38.0
Q ss_pred CCCCCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 3 PQQLSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 3 ~~~~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
...+.|++||+|++..|+.+| +..|+.+ ++.|||.|+.++.++.
T Consensus 4 ~~~~~~~~LP~eil~~If~~L-~~~d~~~---~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCL-CLPELLK---VSGVCKRWYRLASDES 47 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTS-CHHHHHH---TTSSCHHHHHHHTCST
T ss_pred cccCChhhCCHHHHHHHHHhC-CHHHHHH---HHHHHHHHHHHhcCch
Confidence 346889999999999999999 9999999 9999999999986543
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.47 E-value=0.0059 Score=58.47 Aligned_cols=197 Identities=9% Similarity=0.006 Sum_probs=111.8
Q ss_pred cceEEEecCCCcEEecC-------CCCCCCCce-EEee--CCeEEEEeecCC----CccEEEEcCCCCCeecCCCCCCCC
Q 035663 73 QSCTFFNPKTKKFREIP-------LPEVKGRWV-SCSS--HGWLLTVSCLDE----TQNMFLLHPFTRSQVKLPPPPPGT 138 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-------~p~~~~~~~-~~s~--~Gwll~~~~~~~----~~~~~l~NP~T~~~i~LP~~~~~~ 138 (297)
+....||+.+++|..+. +|. +.... .+.. +|-+++.-+.+. ...+.++||.|.+|..+++++...
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 34668999999998876 232 12222 2244 776666432222 257899999999999998776432
Q ss_pred CceeecCceEEEecCCCCCCEEEEEEeC--CCCeEEEEecCCCceEeeccC---cccccCCcCeEEeCCccccCCeEEEe
Q 035663 139 QLQFLNGLRVITSTSPLDPDCLVLASLY--VSSKLAFCRPGDRNWTSIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCL 213 (297)
Q Consensus 139 ~~~~~~~~~~~ls~~p~~~~~~Vv~~~~--~~~~l~~~~~g~~~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l 213 (297)
.. ..++... ++.+.+ +++ ....+..|.+..++|+.+... +..+....-+++... +|++|++
T Consensus 491 ~~-----h~~~~~~----~~~iyv-~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~----~~~iyv~ 556 (695)
T 2zwa_A 491 FR-----HSACSLP----DGNVLI-LGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV----SKQGIIL 556 (695)
T ss_dssp BS-----CEEEECT----TSCEEE-ECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT----TTEEEEE
T ss_pred cc-----ceEEEEc----CCEEEE-ECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC----CCEEEEE
Confidence 11 1122211 222222 222 122788999999999998852 111111111333320 1789988
Q ss_pred ccC--------CcEEEEecCCCCC------CceecCCCCCCccccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceee
Q 035663 214 GSC--------NFIFRIRFDHPHA------PTAEAMPFKPHEYCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCA 278 (297)
Q Consensus 214 ~~~--------g~i~~~d~~~~~~------~~~~~~p~~~~~~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~ 278 (297)
... ..+++||+..+.| .....+|. .. ......+..+ |+|++++-...... ....
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~-----R~~~~~~~~~~~~iyv~GG~~~~~~-----~~~~ 625 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQ-----RYGSQIKYITPRKLLIVGGTSPSGL-----FDRT 625 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GC-----CBSCEEEEEETTEEEEECCBCSSCC-----CCTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CC-----cccceEEEeCCCEEEEECCccCCCC-----CCCC
Confidence 632 3699999999984 32112221 11 1223445556 89999876543200 0123
Q ss_pred EEEEEEECCCCceeecc
Q 035663 279 FIVCKLDLETEKWIMVN 295 (297)
Q Consensus 279 ~~V~~ld~~~~~W~~v~ 295 (297)
-.|+.+|.++++|..+.
T Consensus 626 ~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 626 NSIISLDPLSETLTSIP 642 (695)
T ss_dssp TSEEEEETTTTEEEECC
T ss_pred CeEEEEECCCCeEEEee
Confidence 45788899999998653
No 20
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.34 E-value=4e-05 Score=64.65 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
|.+||.|++..|++.| ++.|+.+ +..|||.||.++.++.
T Consensus 5 l~~LP~ei~l~IlsfL-~p~DL~~---l~~vcr~Wr~la~D~~ 43 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFL-SPHDLCQ---LGSTNHYWNETVRDPI 43 (312)
T ss_dssp HHHSCHHHHHHHHHTS-CHHHHHH---HHTTCHHHHHHHTCHH
T ss_pred hHhCCHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHhccch
Confidence 5679999999999999 9999999 9999999999999886
No 21
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.21 E-value=0.00011 Score=68.64 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=29.6
Q ss_pred CCCCCCCCcHHHHHHHHhhcCC-chhhhccccccccChhHHHhh
Q 035663 4 QQLSWSSLPDELLSVIIQKLID-SDDILNCAVCAAVCSSWQSVV 46 (297)
Q Consensus 4 ~~~~ws~LP~dll~~I~~rL~~-~~d~~r~~~~~~VCk~Wr~~~ 46 (297)
+...|+.||+|++..|+.+| + ..|+.+ ++.|||.|+.+.
T Consensus 2 ~~d~~~~LPdevL~~If~~L-~~~~d~~~---~s~vck~W~~~~ 41 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-QLDKDRNS---VSLVCKSWYEIE 41 (594)
T ss_dssp --------CHHHHHHHHHTC-CCHHHHHH---HHTSCHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-CCchhHHH---HHHHHHHHHHhh
Confidence 45679999999999999999 7 999999 999999999984
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.76 E-value=0.0007 Score=60.70 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCCCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663 6 LSWSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL 49 (297)
Q Consensus 6 ~~ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~ 49 (297)
-..+.||+|++..|+..| +..|+.+ ++.|||.|+.++.+.
T Consensus 17 d~~~~lp~e~~~~i~~~l-~~~~l~~---~~~v~~~~~~~~~~~ 56 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFL-EPKDLLQ---AAQTCRYWRILAEDN 56 (445)
T ss_dssp STTTSSCHHHHHHHHTTS-CHHHHHH---HTTSCHHHHHHHTCS
T ss_pred ChhHHCCHHHHHHHHHhC-CHHHHHH---HHHHhHHHHhhcCch
Confidence 347889999999999999 9999999 999999999998765
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.70 E-value=0.045 Score=52.34 Aligned_cols=199 Identities=15% Similarity=0.060 Sum_probs=103.0
Q ss_pred cceEEEecCCCcEEecC-CCCCCCCceEE-e-eCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEE
Q 035663 73 QSCTFFNPKTKKFREIP-LPEVKGRWVSC-S-SHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVI 149 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-s-~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ 149 (297)
+....||+.+++|..+. +|. +...... . .+|-+++.-+.+....+.++||-|.+|..+++....+..+. ...+
T Consensus 468 ~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~---~~~a 543 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL---VSAG 543 (695)
T ss_dssp CCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC---BSCE
T ss_pred ccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc---ceeE
Confidence 35678999999998873 343 2222223 4 47766663323322389999999999999886321110000 0111
Q ss_pred EecCCCCCCEEEEEEeCC-------CCeEEEEecCCCc------eEeeccC-cccccCCcCeEEeCCccccCCeEEEecc
Q 035663 150 TSTSPLDPDCLVLASLYV-------SSKLAFCRPGDRN------WTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGS 215 (297)
Q Consensus 150 ls~~p~~~~~~Vv~~~~~-------~~~l~~~~~g~~~------W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~ 215 (297)
+..+.. .+.+.+ +.+. ...+..|.+..+. |+.+... ...+....-+++-+ |++|++..
T Consensus 544 ~v~~~~-~~~iyv-~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~------~~iyv~GG 615 (695)
T 2zwa_A 544 LEFDPV-SKQGII-LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP------RKLLIVGG 615 (695)
T ss_dssp EEEETT-TTEEEE-ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET------TEEEEECC
T ss_pred EEEeCC-CCEEEE-ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC------CEEEEECC
Confidence 111111 122222 2221 2467889999888 7777552 12222221223333 88998864
Q ss_pred ---------CCcEEEEecCCCCCCceecCCCCCCc-cccCCceeEEeeeC-CcEEEEEEEccCCCCCCCCceeeEEEEEE
Q 035663 216 ---------CNFIFRIRFDHPHAPTAEAMPFKPHE-YCCNARYNYLVELN-SDLFIVSRFLIPHKSYPCELTCAFIVCKL 284 (297)
Q Consensus 216 ---------~g~i~~~d~~~~~~~~~~~~p~~~~~-~~~~~~~~~LVes~-G~LllV~~~~~~~~~~~~~~~~~~~V~~l 284 (297)
...+.+||+....|.. ..+|....+ ..........+..+ |+|++++-.... +....... .||++
T Consensus 616 ~~~~~~~~~~~~v~~yd~~t~~W~~-~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~c---fsfGt~~n-~i~~l 690 (695)
T 2zwa_A 616 TSPSGLFDRTNSIISLDPLSETLTS-IPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATC---YGFGSVTN-VGLKL 690 (695)
T ss_dssp BCSSCCCCTTTSEEEEETTTTEEEE-CCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEEC---TTSCEEEC-CCEEE
T ss_pred ccCCCCCCCCCeEEEEECCCCeEEE-eeccccccCCCCccceeeeEEEeCCCEEEEEeCCccC---cCcccccc-ceEEE
Confidence 2369999999998873 333321000 00001112234434 588888764321 11112234 88888
Q ss_pred ECCC
Q 035663 285 DLET 288 (297)
Q Consensus 285 d~~~ 288 (297)
|...
T Consensus 691 dl~~ 694 (695)
T 2zwa_A 691 IAIA 694 (695)
T ss_dssp EECC
T ss_pred EEEc
Confidence 8754
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.67 E-value=0.012 Score=55.80 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=82.5
Q ss_pred eEEEecCCCcEEec-CCCCCCCCceEE-ee-CCeEEEEeecCCC---------ccEEEEcCCCCCeecCCCCCCCCC-ce
Q 035663 75 CTFFNPKTKKFREI-PLPEVKGRWVSC-SS-HGWLLTVSCLDET---------QNMFLLHPFTRSQVKLPPPPPGTQ-LQ 141 (297)
Q Consensus 75 ~~~~~~~~~~~~~~-~~p~~~~~~~~~-s~-~Gwll~~~~~~~~---------~~~~l~NP~T~~~i~LP~~~~~~~-~~ 141 (297)
...||+..++|..+ ++|. ...... .. +|-+++.-+.+.. ..+.++||.|++|..+++.+.... ..
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~ 245 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 245 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred cccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence 34577778888754 4554 222333 43 7766663222211 268899999999998876543221 10
Q ss_pred eecCceEEEecCCCCCCEEEEEEeC-CCCeEEEEecCCCceEeeccCcccccCCcCeEEe-CCccccCCeEEEecc--C-
Q 035663 142 FLNGLRVITSTSPLDPDCLVLASLY-VSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFY-DGRNCCKGYFYCLGS--C- 216 (297)
Q Consensus 142 ~~~~~~~~ls~~p~~~~~~Vv~~~~-~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~-~~~~~~~G~~Y~l~~--~- 216 (297)
..+++.. ++.+ +++.+ ....+.+|.+..++|+.+..+...+... ..+.. + |++|++.. +
T Consensus 246 ----~~~~~~~----~g~l-yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-s~~~~~d------g~iyv~GG~~~~ 309 (656)
T 1k3i_A 246 ----PGISMDG----NGQI-VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATMSD------GRVFTIGGSWSG 309 (656)
T ss_dssp ----CEEEECT----TSCE-EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEECTT------SCEEEECCCCCS
T ss_pred ----ccccCCC----CCCE-EEeCCCCCCceEEecCcCCceeECCCCCcccccc-ceEEecC------CeEEEEeCcccC
Confidence 0122221 1222 22333 3457899999999999987652111111 44555 7 99999975 1
Q ss_pred ----CcEEEEecCCCCCCc
Q 035663 217 ----NFIFRIRFDHPHAPT 231 (297)
Q Consensus 217 ----g~i~~~d~~~~~~~~ 231 (297)
..+.+||+..+.|..
T Consensus 310 ~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 310 GVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp SSCCCCEEEEETTTTEEEE
T ss_pred CcccccceEeCCCCCccee
Confidence 368999999888864
No 25
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.40 E-value=0.0011 Score=59.41 Aligned_cols=39 Identities=26% Similarity=0.507 Sum_probs=35.3
Q ss_pred CCCCcHH----HHHHHHhhcCCchhhhccccccccChhHHHhhhhhh
Q 035663 8 WSSLPDE----LLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDLY 50 (297)
Q Consensus 8 ws~LP~d----ll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~~ 50 (297)
.+.||+| |+..||..| +..|+.+ ++.|||.|+.++.++.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l-~~~~l~~---~~~v~~~w~~~~~~~~ 53 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYL-DAKSLCA---AELVCKEWYRVTSDGM 53 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTC-CHHHHHH---HHHHCHHHHHHHHHTT
T ss_pred HHHCCcchHHHHHHHHHhcC-CHHHHHH---HHHHHHHHHHHhcChH
Confidence 4569999 999999999 9999999 9999999999987653
No 26
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.18 E-value=0.014 Score=55.34 Aligned_cols=105 Identities=7% Similarity=-0.081 Sum_probs=65.3
Q ss_pred eEEEEecCCCceEeeccCcccccCCc-CeE-EeCCccccCCeEEEeccC--CcEEEEecCCCCCCceecCCCCCCccccC
Q 035663 170 KLAFCRPGDRNWTSIVHDQYIRFTNT-SAH-FYDGRNCCKGYFYCLGSC--NFIFRIRFDHPHAPTAEAMPFKPHEYCCN 245 (297)
Q Consensus 170 ~l~~~~~g~~~W~~~~~~~~~~~~~~-d~v-~~~~~~~~~G~~Y~l~~~--g~i~~~d~~~~~~~~~~~~p~~~~~~~~~ 245 (297)
.+.+|.+..++|+.+..+...+.... ..+ ..+ |++|++... ..+.+||+..+.|.....+|.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~------g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~------- 286 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN------GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA------- 286 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT------SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-------
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCC------CCEEEeCCCCCCceEEecCcCCceeECCCCCcc-------
Confidence 56789999999998765411111111 223 245 999999753 3799999998888752233331
Q ss_pred CceeEEeee-CCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663 246 ARYNYLVEL-NSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV 294 (297)
Q Consensus 246 ~~~~~LVes-~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v 294 (297)
......+.. +|+|++++-.... ....-.++.+|.++++|.++
T Consensus 287 R~~~s~~~~~dg~iyv~GG~~~~-------~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 287 RGYQSSATMSDGRVFTIGGSWSG-------GVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CSSCEEEECTTSCEEEECCCCCS-------SSCCCCEEEEETTTTEEEEE
T ss_pred ccccceEEecCCeEEEEeCcccC-------CcccccceEeCCCCCcceeC
Confidence 112334455 8999999864322 11223466778889999986
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.95 E-value=0.0024 Score=59.56 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHhhcCCchhhhccccccccChhHHHhhhhh
Q 035663 8 WSSLPDELLSVIIQKLIDSDDILNCAVCAAVCSSWQSVVKDL 49 (297)
Q Consensus 8 ws~LP~dll~~I~~rL~~~~d~~r~~~~~~VCk~Wr~~~~~~ 49 (297)
.++||+|++..|+.+|.+..|+.+ ++.|||.|+.+....
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~---~s~vck~W~~~~~~~ 51 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDS---ASLVCRRWFKIDSET 51 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHH---HTTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHH---HHHHhHHHHHhhhcc
Confidence 357999999999999988999999 999999999985433
No 28
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=56.13 E-value=86 Score=25.94 Aligned_cols=133 Identities=9% Similarity=0.007 Sum_probs=70.8
Q ss_pred cceEEEecCCCcEE-ecCCCCCCCCceEE-eeCCeEEEEeecC-CCccEEEEcCCCCCee---cCCCCCC-CCCceeecC
Q 035663 73 QSCTFFNPKTKKFR-EIPLPEVKGRWVSC-SSHGWLLTVSCLD-ETQNMFLLHPFTRSQV---KLPPPPP-GTQLQFLNG 145 (297)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~p~~~~~~~~~-s~~Gwll~~~~~~-~~~~~~l~NP~T~~~i---~LP~~~~-~~~~~~~~~ 145 (297)
+....+|+.+++.. +++ .......+. +.+|.+.. .+ ..+.+.++||-|++.. .++.... ....
T Consensus 64 ~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv---~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p----- 133 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYV---TQIWDYRIFIINPKTYEITGYIECPDMDMESGST----- 133 (328)
T ss_dssp TEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEE---EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC-----
T ss_pred CEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEE---EECCCCeEEEEECCCCeEEEEEEcCCccccCCCc-----
Confidence 46778899887653 342 211222334 67886666 44 4688999999998753 3333110 0011
Q ss_pred ceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceEe-eccC-cccccCCcCeEEeCCccccCCeEEEeccC-------
Q 035663 146 LRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTS-IVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSC------- 216 (297)
Q Consensus 146 ~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~-~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~------- 216 (297)
..+++ .++...++-......+.++.....+... +... .-. ++.+-. +|++|+.+..
T Consensus 134 ~~i~~-----~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~-----~i~~~~-----dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 134 EQMVQ-----YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT-----SLVMDK-----YNKMWTITDGGYEGSPY 198 (328)
T ss_dssp CCEEE-----ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC-----CCEECT-----TSEEEEEBCCBCTTCSS
T ss_pred ceEEE-----ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc-----ceEEcC-----CCCEEEEECCCccCCcc
Confidence 11222 1333333322235678888876654332 2211 111 444432 2898888763
Q ss_pred ----CcEEEEecCCCCCC
Q 035663 217 ----NFIFRIRFDHPHAP 230 (297)
Q Consensus 217 ----g~i~~~d~~~~~~~ 230 (297)
+.|.++|.......
T Consensus 199 ~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp CBCCCEEEEEETTTTEEE
T ss_pred ccCCceEEEEECCCCeEE
Confidence 47999998765433
No 29
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=55.37 E-value=84 Score=25.62 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=80.0
Q ss_pred cceEEEecCCCcEEe-cCCCCCCCCceEEeeCC-eEEEEeecCCCccEEEEcCCCCCeec---CCCCCCCCCceeecCce
Q 035663 73 QSCTFFNPKTKKFRE-IPLPEVKGRWVSCSSHG-WLLTVSCLDETQNMFLLHPFTRSQVK---LPPPPPGTQLQFLNGLR 147 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~---LP~~~~~~~~~~~~~~~ 147 (297)
.....+|+.+++... ++..........++.+| +++. .+..+.+.++|+-+++.+. ++....... .
T Consensus 164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~---~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-------~ 233 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT---TNADGELITIDTADNKILSRKKLLDDGKEHF-------F 233 (353)
T ss_dssp CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE---ECTTSEEEEEETTTTEEEEEEECCCSSSCCC-------E
T ss_pred ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE---EcCCCeEEEEECCCCeEEEEEEcCCCCCCcc-------c
Confidence 345667777664332 33222111122235544 6666 4557889999999987543 221111111 1
Q ss_pred EEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceEe-eccCcccccCCcCeEEeCCccccCCe-EEEecc-CCcEEEEec
Q 035663 148 VITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTS-IVHDQYIRFTNTSAHFYDGRNCCKGY-FYCLGS-CNFIFRIRF 224 (297)
Q Consensus 148 ~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~-~~~~~~~~~~~~d~v~~~~~~~~~G~-~Y~l~~-~g~i~~~d~ 224 (297)
..+..+|+ +++..+. ....+.+.++...+.+-.. +....-. .+.+... |+ +|+... ++.|.++|+
T Consensus 234 ~~~~~s~d-g~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~s~d-----g~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 234 INISLDTA-RQRAFIT-DSKAAEVLVVDTRNGNILAKVAAPESL-----AVLFNPA-----RNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp EEEEEETT-TTEEEEE-ESSSSEEEEEETTTCCEEEEEECSSCC-----CEEEETT-----TTEEEEEETTTTEEEEEET
T ss_pred ceEEECCC-CCEEEEE-eCCCCEEEEEECCCCcEEEEEEcCCCc-----eEEECCC-----CCEEEEEECCCCeEEEEEC
Confidence 12333343 3444333 3345788888876554322 1111111 4445421 55 777664 568999998
Q ss_pred CCCCCCceecCCCCCCccccCCceeEEe-eeCCcEEEEEEEc
Q 035663 225 DHPHAPTAEAMPFKPHEYCCNARYNYLV-ELNSDLFIVSRFL 265 (297)
Q Consensus 225 ~~~~~~~~~~~p~~~~~~~~~~~~~~LV-es~G~LllV~~~~ 265 (297)
........+..+. .-..+. .-+|+.++|....
T Consensus 302 ~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KSYKVVKTFDTPT---------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEEECCS---------EEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEEecCC---------CCCeEEEcCCCCEEEEEEcc
Confidence 7664332222222 112232 3358876666655
No 30
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=52.11 E-value=86 Score=24.78 Aligned_cols=131 Identities=9% Similarity=0.040 Sum_probs=63.7
Q ss_pred ceEEEecCCCcEEecCCCCCCC-CceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEe
Q 035663 74 SCTFFNPKTKKFREIPLPEVKG-RWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITS 151 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~~p~~~~-~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls 151 (297)
....|++ +++...+..+.... ...+. ..+|-+.+. ....+.+..+|| +++...++....... ...+.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~-------~~~i~ 231 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNAR-------PHAIT 231 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCC-------EEEEE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCC-------ceeEE
Confidence 3445666 55444433332111 12233 556755552 223578999999 887544321111111 12333
Q ss_pred cCCCCCCEEEEEEeCCCCeEEEEecCCCceEeeccC-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCC
Q 035663 152 TSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHP 227 (297)
Q Consensus 152 ~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~ 227 (297)
.++. +. + .+.......+..+++ ++.-..+... ... ....+++.+ |.+|+.+..+.|..||+..+
T Consensus 232 ~~~~-g~-l-~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~--~~~~i~~~~------g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 232 AGAG-ID-L-WFTEWGANKIGRLTS-NNIIEEYPIQIKSA--EPHGICFDG------ETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp ECST-TC-E-EEEETTTTEEEEEET-TTEEEEEECSSSSC--CEEEEEECS------SCEEEEETTTEEEEEEEC--
T ss_pred ECCC-CC-E-EEeccCCceEEEECC-CCceEEEeCCCCCC--ccceEEecC------CCEEEEecCCcEEEEEcCcc
Confidence 4443 22 2 222223567888876 4433333211 000 011444434 99998877778999998754
No 31
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=52.08 E-value=1e+02 Score=25.51 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=72.2
Q ss_pred CcceEEEecCCCcEEecC-C-----CCCCCCceEEeeCCeEEEEeecCCCccEEEEcCCCCCee-cCCCCCCCCCceeec
Q 035663 72 RQSCTFFNPKTKKFREIP-L-----PEVKGRWVSCSSHGWLLTVSCLDETQNMFLLHPFTRSQV-KLPPPPPGTQLQFLN 144 (297)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~-----p~~~~~~~~~s~~Gwll~~~~~~~~~~~~l~NP~T~~~i-~LP~~~~~~~~~~~~ 144 (297)
.....++|+.+++....- . +-......+.-.++.+..+ ....+.+.++|+-|++.+ .+|....+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~--~~~~~~v~viD~~t~~~~~~i~~~~~p------- 86 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIV--VNNSHVIFAIDINTFKEVGRITGFTSP------- 86 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEE--EGGGTEEEEEETTTCCEEEEEECCSSE-------
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEE--EcCCCEEEEEECcccEEEEEcCCCCCC-------
Confidence 467889999988754311 0 1000111122345655552 233578999999999874 35432211
Q ss_pred CceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceE-eeccCc-ccc-cCCcCeEEeCCccccCCeEEEecc--CCcE
Q 035663 145 GLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWT-SIVHDQ-YIR-FTNTSAHFYDGRNCCKGYFYCLGS--CNFI 219 (297)
Q Consensus 145 ~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~-~~~~~~-~~~-~~~~d~v~~~~~~~~~G~~Y~l~~--~g~i 219 (297)
..++++. . + .+.+....+..+.++...+.+-. .++... ... .....+++.+ |++|+.+. .+.|
T Consensus 87 -~~i~~~~--~--g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~------~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 87 -RYIHFLS--D--E-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYG------KYVYVNCWSYQNRI 154 (328)
T ss_dssp -EEEEEEE--T--T-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEET------TEEEEEECTTCCEE
T ss_pred -cEEEEeC--C--C-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEEC------CEEEEEcCCCCCEE
Confidence 1233332 2 2 23322223678888887655422 122111 000 0111555555 99999875 5689
Q ss_pred EEEecCCCCCC
Q 035663 220 FRIRFDHPHAP 230 (297)
Q Consensus 220 ~~~d~~~~~~~ 230 (297)
.++|+......
T Consensus 155 ~viD~~t~~~~ 165 (328)
T 3dsm_A 155 LKIDTETDKVV 165 (328)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999876543
No 32
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=48.33 E-value=1.2e+02 Score=25.33 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=55.8
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCee-cCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecC--C
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQV-KLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPG--D 178 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~i-~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g--~ 178 (297)
.+|.+++ ....+.++.+|+-|++.+ ..+. .. .. ..+. + ++.+.+. ..++.+..++.. .
T Consensus 238 ~~~~v~~---~~~~g~l~~~d~~tG~~~w~~~~-~~---~~-----~~~~--~---~~~l~~~--~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 238 VNGVVFA---LAYNGNLTALDLRSGQIMWKREL-GS---VN-----DFIV--D---GNRIYLV--DQNDRVMALTIDGGV 298 (376)
T ss_dssp ETTEEEE---ECTTSCEEEEETTTCCEEEEECC-CC---EE-----EEEE--E---TTEEEEE--ETTCCEEEEETTTCC
T ss_pred ECCEEEE---EecCcEEEEEECCCCcEEeeccC-CC---CC-----CceE--E---CCEEEEE--cCCCeEEEEECCCCc
Confidence 4666666 445678889999988743 2221 10 10 0111 1 2222222 124566666643 4
Q ss_pred CceEeeccC--cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCCC
Q 035663 179 RNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHA 229 (297)
Q Consensus 179 ~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~ 229 (297)
..|+.-... ... .++..+ |.+|+.+.+|.|+++|...+..
T Consensus 299 ~~w~~~~~~~~~~~-----~~~~~~------~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 299 TLWTQSDLLHRLLT-----SPVLYN------GNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEEECTTTTSCCC-----CCEEET------TEEEEECTTSEEEEEETTTCCE
T ss_pred EEEeecccCCCccc-----CCEEEC------CEEEEEeCCCeEEEEECCCCcE
Confidence 457754221 222 556667 9999999889999999877654
No 33
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.77 E-value=1.5e+02 Score=25.04 Aligned_cols=101 Identities=8% Similarity=-0.009 Sum_probs=55.6
Q ss_pred CCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceE
Q 035663 103 HGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWT 182 (297)
Q Consensus 103 ~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~ 182 (297)
++.++. ...++.+.++|.-+++...+-.......+ ..+...| ++.+.+++ ..++.+.+|+...+.-.
T Consensus 103 ~~~l~~---~~~d~~v~lw~~~~~~~~~~~~~~~~~~v-------~~v~~s~-~~~~l~~~--~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 103 NLNVVA---VALERNVYVWNADSGSVSALAETDESTYV-------ASVKWSH-DGSFLSVG--LGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TTSEEE---EEETTEEEEEETTTCCEEEEEECCTTCCE-------EEEEECT-TSSEEEEE--ETTSCEEEEETTTCCEE
T ss_pred CCCEEE---EECCCeEEEeeCCCCcEeEeeecCCCCCE-------EEEEECC-CCCEEEEE--CCCCeEEEEECcCCeEE
Confidence 455555 34568899999999886543322111111 1233344 34555443 24678999987655422
Q ss_pred eeccC---cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCC
Q 035663 183 SIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHP 227 (297)
Q Consensus 183 ~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~ 227 (297)
..-.. ... .+.+.+ ..++..+.+|.|..+|+...
T Consensus 170 ~~~~~~~~~v~-----~~~~~~------~~l~~~~~dg~i~i~d~~~~ 206 (401)
T 4aez_A 170 RTMAGHQARVG-----CLSWNR------HVLSSGSRSGAIHHHDVRIA 206 (401)
T ss_dssp EEECCCSSCEE-----EEEEET------TEEEEEETTSEEEEEETTSS
T ss_pred EEecCCCCceE-----EEEECC------CEEEEEcCCCCEEEEecccC
Confidence 21111 111 333433 55555566789999998743
No 34
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.81 E-value=1.4e+02 Score=24.40 Aligned_cols=155 Identities=10% Similarity=0.093 Sum_probs=77.7
Q ss_pred CC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCce
Q 035663 103 HG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNW 181 (297)
Q Consensus 103 ~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W 181 (297)
+| +++. ...++.+.++|.-+++.+.+-.......+ ..+.+ .|+ +.+.+. ...++.+.+|+.....-
T Consensus 138 ~~~~l~s---~s~dg~i~~wd~~~~~~~~~~~~~~~~~i-----~~~~~--~pd-g~~las--g~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIW---ADNRGTIGFQSYEDDSQYIVHSAKSDVEY-----SSGVL--HKD-SLLLAL--YSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEE---EETTCCEEEEESSSSCEEEEECCCSSCCC-----CEEEE--CTT-SCEEEE--ECTTSCEEEEESSCTTS
T ss_pred CCCEEEE---EeCCCcEEEEECCCCcEEEEEecCCCCce-----EEEEE--CCC-CCEEEE--EcCCCEEEEEECCCCCC
Confidence 44 5554 44568899999998887543211111111 12333 342 344333 34578899998776542
Q ss_pred E--eecc--C-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCCCCceecCCCCCCccccCCceeEEe-eeC
Q 035663 182 T--SIVH--D-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFKPHEYCCNARYNYLV-ELN 255 (297)
Q Consensus 182 ~--~~~~--~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~LV-es~ 255 (297)
. .+.. . ... .+.+.. +|.+.+...++.|..+|+....... ...+...... ......+. ..+
T Consensus 205 ~~~~~~~~h~~~v~-----~l~fs~-----~g~~l~s~~~~~v~iwd~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 271 (343)
T 3lrv_A 205 ASSRFPVDEEAKIK-----EVKFAD-----NGYWMVVECDQTVVCFDLRKDVGTL-AYPTYTIPEF--KTGTVTYDIDDS 271 (343)
T ss_dssp CCEECCCCTTSCEE-----EEEECT-----TSSEEEEEESSBEEEEETTSSTTCB-SSCCCBC-------CCEEEEECTT
T ss_pred CccEEeccCCCCEE-----EEEEeC-----CCCEEEEEeCCeEEEEEcCCCCcce-eecccccccc--cccceEEEECCC
Confidence 2 2221 1 111 444443 1766666556689999998765432 1111100000 01111222 234
Q ss_pred CcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceee
Q 035663 256 SDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIM 293 (297)
Q Consensus 256 G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~ 293 (297)
|+.+++.... ...++||.++...+.|..
T Consensus 272 g~~l~~~s~~----------d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 272 GKNMIAYSNE----------SNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp SSEEEEEETT----------TTEEEEEEECTTTCSEEE
T ss_pred CCEEEEecCC----------CCcEEEEEEcccccceEe
Confidence 7766654321 235788888777777764
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=40.87 E-value=1.5e+02 Score=24.23 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=37.4
Q ss_pred CCEEEEEEeCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 157 PDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 157 ~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
+.+.+.+ ..++.+.+|+...+.|..+.........-..+.+... .-+..++..+.+|.|..+|+....
T Consensus 69 ~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 69 GTILASC--SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CSEEEEE--ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG--GGCSEEEEEETTSEEEEEECCTTS
T ss_pred CCEEEEe--ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCC--CCCCEEEEecCCCcEEEEecCCCC
Confidence 4555443 3468899999888877655432000000013334320 001456666677899999988663
No 36
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=40.72 E-value=1.5e+02 Score=24.22 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=52.1
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCC-CCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecC-C
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPP-GTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPG-D 178 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~-~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g-~ 178 (297)
+.+|-|+.+.....++.+.+++.-+++...+..... .... ..++++ |+ +.+.++. ...++.+.+|+.. +
T Consensus 48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p-----~~~a~s--pd-g~~l~~~-~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP-----AYVAVD--EA-RQLVYSA-NYHKGTAEVMKIAAD 118 (347)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC-----SEEEEE--TT-TTEEEEE-ETTTTEEEEEEECTT
T ss_pred ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC-----EEEEEC--CC-CCEEEEE-eCCCCEEEEEEeCCC
Confidence 667754442111224788999986665332221100 0001 123443 32 4454443 3345778888763 4
Q ss_pred CceEeeccCccc-c-----cC---CcCeEEeCCccccCCeEEEecc-CCcEEEEecC
Q 035663 179 RNWTSIVHDQYI-R-----FT---NTSAHFYDGRNCCKGYFYCLGS-CNFIFRIRFD 225 (297)
Q Consensus 179 ~~W~~~~~~~~~-~-----~~---~~d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~ 225 (297)
+....+...... . .. ...+++.. +|++|+.+. .+.|.++|+.
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEEC
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEEC
Confidence 444433221000 0 00 00233432 288887765 4579999988
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=39.97 E-value=1.4e+02 Score=23.62 Aligned_cols=104 Identities=8% Similarity=0.040 Sum_probs=59.3
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeec-CCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCC
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVK-LPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDR 179 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~ 179 (297)
+.+|-++. ...++.+.++|.-+++.+. +..... .+ ..+...|.. . ++. ...++.+.+|+..+.
T Consensus 193 ~~~~~~~~---~~~dg~i~i~d~~~~~~~~~~~~~~~--~i-------~~~~~~~~~--~-l~~-~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 193 VDDGHFIS---CSNDGLIKLVDMHTGDVLRTYEGHES--FV-------YCIKLLPNG--D-IVS-CGEDRTVRIWSKENG 256 (313)
T ss_dssp EETTEEEE---EETTSEEEEEETTTCCEEEEEECCSS--CE-------EEEEECTTS--C-EEE-EETTSEEEEECTTTC
T ss_pred cCCCeEEE---ccCCCeEEEEECCchhhhhhhhcCCc--eE-------EEEEEecCC--C-EEE-EecCCEEEEEECCCC
Confidence 66777555 4556889999998877543 221111 11 123334433 2 232 335788999987765
Q ss_pred ceEeeccC---cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCCCC
Q 035663 180 NWTSIVHD---QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHAP 230 (297)
Q Consensus 180 ~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~~ 230 (297)
+-...-.. ... .+.+.. +|++...+.+|.|..+|+..+.+.
T Consensus 257 ~~~~~~~~~~~~i~-----~~~~~~-----~~~~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 257 SLKQVITLPAISIW-----SVDCMS-----NGDIIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp CEEEEEECSSSCEE-----EEEECT-----TSCEEEEETTSCEEEEESCGGGCC
T ss_pred ceeEEEeccCceEE-----EEEEcc-----CCCEEEEeCCCcEEEEeCCCCcee
Confidence 43221111 111 444443 278777677889999999876554
No 38
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=38.71 E-value=2.5e+02 Score=26.33 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=37.3
Q ss_pred CCEEEEEEeCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCC
Q 035663 157 PDCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHP 227 (297)
Q Consensus 157 ~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~ 227 (297)
+.+.+.+ ..++.+.+|+...+.|..+.........-..+.+... .-+..++..+.+|.|..+|+...
T Consensus 67 ~~~l~s~--s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 67 GTILASC--SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp CSEEEEE--ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG--GGCSEEEEEETTSEEEEEECCSS
T ss_pred CCEEEEE--eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCC--CCCCEEEEEeCCCcEEEEEeecC
Confidence 4555443 3478899999888777655432000000013333320 00145666666789999998766
No 39
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=38.18 E-value=1.1e+02 Score=26.49 Aligned_cols=82 Identities=13% Similarity=-0.027 Sum_probs=42.0
Q ss_pred CCeEEEeccCCcEEEEecCCCCCCc--eec-CCC-C-CCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEE
Q 035663 207 KGYFYCLGSCNFIFRIRFDHPHAPT--AEA-MPF-K-PHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIV 281 (297)
Q Consensus 207 ~G~~Y~l~~~g~i~~~d~~~~~~~~--~~~-~p~-~-~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V 281 (297)
+|++|+++.+|.++++|+..+.... ++. ... . ..+|........-+.-+|+.+.|.........+ +...=+|
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h---k~~~~~V 313 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH---KTASRFV 313 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT---TSCEEEE
T ss_pred CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc---CCCCCEE
Confidence 4999999999999999998765321 111 000 0 012211122233334455555554432211111 2345678
Q ss_pred EEEECCCCce
Q 035663 282 CKLDLETEKW 291 (297)
Q Consensus 282 ~~ld~~~~~W 291 (297)
|.+|.++++-
T Consensus 314 ~viD~~t~kv 323 (386)
T 3sjl_D 314 VVLDAKTGER 323 (386)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCeE
Confidence 8888876653
No 40
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.64 E-value=17 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEeecCCCccEEEEcCCCCCe-ecCCC
Q 035663 104 GWLLTVSCLDETQNMFLLHPFTRSQ-VKLPP 133 (297)
Q Consensus 104 Gwll~~~~~~~~~~~~l~NP~T~~~-i~LP~ 133 (297)
-|... ....++.|.+||.|++. .+.|.
T Consensus 21 ~W~~v---~T~dGR~fyyN~~Tk~S~WekP~ 48 (73)
T 2dk7_A 21 PWCVV---WTGDERVFFYNPTTRLSMWDRPD 48 (73)
T ss_dssp SCEEE---EESSSCEEEEETTTTEECSSCCT
T ss_pred CcEEE---ECCCCCEEEecCcccceeccCCh
Confidence 58887 56679999999999974 56665
No 41
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=36.52 E-value=2.1e+02 Score=25.65 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=21.9
Q ss_pred cCeEEeCCccccCCeEEEeccCCcEEEEecCC
Q 035663 195 TSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDH 226 (297)
Q Consensus 195 ~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~ 226 (297)
..+++++ |++|++...+..+.+|+..
T Consensus 136 T~v~~~~------g~llAl~E~~~p~~ldp~t 161 (490)
T 2biw_A 136 TNITYWG------DRLLALWEGGQPHRLEPSN 161 (490)
T ss_dssp SEEEEET------TEEEEECTTSCCEEECTTT
T ss_pred EEEEEEC------CEEEEEEcCCCCEeccccc
Confidence 3778888 9999999998888888754
No 42
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=36.23 E-value=1.7e+02 Score=23.50 Aligned_cols=111 Identities=11% Similarity=0.033 Sum_probs=51.3
Q ss_pred eeCC-eEEEEeecC-CCccEEEEcCCC-CCeecCC--CCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEe
Q 035663 101 SSHG-WLLTVSCLD-ETQNMFLLHPFT-RSQVKLP--PPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCR 175 (297)
Q Consensus 101 s~~G-wll~~~~~~-~~~~~~l~NP~T-~~~i~LP--~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~ 175 (297)
+.+| +++. .+ ..+.+.+++.-+ ++...+. ......... ...+..+|+ +.+.++. ...++.+.+|+
T Consensus 137 s~dg~~l~~---~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~pd-g~~l~~~-~~~~~~i~~~~ 206 (343)
T 1ri6_A 137 SPDNRTLWV---PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG-----PRHMVFHPN-EQYAYCV-NELNSSVDVWE 206 (343)
T ss_dssp CTTSSEEEE---EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC-----EEEEEECTT-SSEEEEE-ETTTTEEEEEE
T ss_pred CCCCCEEEE---ecCCCCEEEEEEecCCCceeeecccccccCCCCC-----cceEEECCC-CCEEEEE-eCCCCEEEEEE
Confidence 5555 5655 33 457788888876 5432211 110000000 112333443 3454443 33467888888
Q ss_pred cC--CCceEeeccC-ccc-ccC----CcCeEEeCCccccCC-eEEEecc-CCcEEEEecCC
Q 035663 176 PG--DRNWTSIVHD-QYI-RFT----NTSAHFYDGRNCCKG-YFYCLGS-CNFIFRIRFDH 226 (297)
Q Consensus 176 ~g--~~~W~~~~~~-~~~-~~~----~~d~v~~~~~~~~~G-~~Y~l~~-~g~i~~~d~~~ 226 (297)
.. .+.+...... ... .+. ...+.+.. +| .+|+... ++.|.++|+..
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-----dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-----DGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECT
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECC-----CCCEEEEEecCCCEEEEEEEcC
Confidence 74 3444332211 000 000 00244442 15 4665553 56899999874
No 43
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=35.22 E-value=1.2e+02 Score=25.90 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCceEeeccC-cccc----cCCcCeEEeC-CccccCCeEEEeccCCcEEEEecCCCC
Q 035663 167 VSSKLAFCRPGDRNWTSIVHD-QYIR----FTNTSAHFYD-GRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 167 ~~~~l~~~~~g~~~W~~~~~~-~~~~----~~~~d~v~~~-~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
.++.+..+...++.|+.--.. .... ....+++..+ |.+..+|++|+-+.+|.++++|+..+.
T Consensus 65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 477888787776665532111 1110 0011233300 000023888888888888888877664
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=33.35 E-value=3.7e+02 Score=26.69 Aligned_cols=104 Identities=9% Similarity=-0.004 Sum_probs=54.7
Q ss_pred eeCC-eEEEEeecCCCccEEEEcCCCCCeec-CCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCC
Q 035663 101 SSHG-WLLTVSCLDETQNMFLLHPFTRSQVK-LPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGD 178 (297)
Q Consensus 101 s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~ 178 (297)
+.+| +++. ...++.+.++|.-|++.+. ++.... .+ ..+...|..+...++. ...++.+.+|+...
T Consensus 666 s~~~~~l~s---~~~d~~v~vwd~~~~~~~~~~~~~~~--~v-------~~~~~~~~~~~~~l~s-g~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 666 SSDDSYIAT---CSADKKVKIWDSATGKLVHTYDEHSE--QV-------NCCHFTNKSNHLLLAT-GSNDFFLKLWDLNQ 732 (1249)
T ss_dssp CTTSSEEEE---EETTSEEEEEETTTCCEEEEEECCSS--CE-------EEEEECSSSSCCEEEE-EETTSCEEEEETTS
T ss_pred ecCCCEEEE---EeCCCeEEEEECCCCceEEEEcCCCC--cE-------EEEEEecCCCceEEEE-EeCCCeEEEEECCC
Confidence 5555 6655 4456889999999987643 222111 11 1233334433333333 33578899998776
Q ss_pred CceEeeccC---cccccCCcCeEEeCCccccCCe-EEEeccCCcEEEEecCCC
Q 035663 179 RNWTSIVHD---QYIRFTNTSAHFYDGRNCCKGY-FYCLGSCNFIFRIRFDHP 227 (297)
Q Consensus 179 ~~W~~~~~~---~~~~~~~~d~v~~~~~~~~~G~-~Y~l~~~g~i~~~d~~~~ 227 (297)
+.-...-.. ... .+.+... |+ +...+.+|.|..+|+...
T Consensus 733 ~~~~~~~~~h~~~v~-----~~~~sp~-----~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVN-----HCRFSPD-----DELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp SSEEEEECCCSSCEE-----EEEECSS-----TTEEEEEESSSEEEEEEGGGT
T ss_pred cchhheecCCCCCEE-----EEEEecC-----CCEEEEEECCCeEEEEeCCCC
Confidence 543221111 111 3334321 44 444455678888888654
No 45
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=32.12 E-value=2.4e+02 Score=24.09 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=56.5
Q ss_pred eeCC-eEEEEeecC-CCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeC-CCCeEEEEecC
Q 035663 101 SSHG-WLLTVSCLD-ETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLY-VSSKLAFCRPG 177 (297)
Q Consensus 101 s~~G-wll~~~~~~-~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~-~~~~l~~~~~g 177 (297)
|.+| +++.+. .+ ....++++|.-|++...+..... .+ ..+..+|+ +.++++.... ....|.++...
T Consensus 187 Spdg~~la~~s-~~~~~~~i~~~d~~tg~~~~l~~~~~--~~-------~~~~~spd-g~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 187 SPDGSKLAYVT-FESGRSALVIQTLANGAVRQVASFPR--HN-------GAPAFSPD-GSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp CTTSSEEEEEE-CTTSSCEEEEEETTTCCEEEEECCSS--CE-------EEEEECTT-SSEEEEEECTTSSCEEEEEETT
T ss_pred cCCCCEEEEEE-ecCCCcEEEEEECCCCcEEEeecCCC--cc-------cCEEEcCC-CCEEEEEEecCCCceEEEEECC
Confidence 6566 666632 22 12589999999998766543321 11 12233343 4455433322 23468888877
Q ss_pred CCceEeeccC--cccccCCcCeEEeCCccccCCe-EEEecc-CC--cEEEEecCCCC
Q 035663 178 DRNWTSIVHD--QYIRFTNTSAHFYDGRNCCKGY-FYCLGS-CN--FIFRIRFDHPH 228 (297)
Q Consensus 178 ~~~W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~-~Y~l~~-~g--~i~~~d~~~~~ 228 (297)
.+....+... ... .+.+.. +|+ +++... ++ .|+.+|+....
T Consensus 256 ~~~~~~l~~~~~~~~-----~~~~sp-----dg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 256 SGQIRQVTDGRSNNT-----EPTWFP-----DSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp TCCEEECCCCSSCEE-----EEEECT-----TSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CCCEEeCcCCCCccc-----ceEECC-----CCCEEEEEECCCCCcEEEEEECCCCC
Confidence 6655444322 111 344442 165 444443 33 78888987664
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.06 E-value=2.3e+02 Score=23.80 Aligned_cols=97 Identities=6% Similarity=-0.031 Sum_probs=47.4
Q ss_pred CCCccEEEEcCCCCCeec-CCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCceEe-eccC-cc
Q 035663 113 DETQNMFLLHPFTRSQVK-LPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTS-IVHD-QY 189 (297)
Q Consensus 113 ~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~-~~~~-~~ 189 (297)
..++.+.++|.-+++.+. +..... .+ ..+...|..+...+.+....++.+.+|....+.-.. +... ..
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~~~~~--~v-------~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v 306 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKTNHNA--AV-------KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV 306 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEECCCSS--CC-------CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCE
T ss_pred eCCCeEEEccCCCCCccEEecCCcc--eE-------EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 345677788777665432 222111 01 122334444444333212247788899876543221 1111 12
Q ss_pred cccCCcCeEEeCCccccCCeEEEec---cCCcEEEEecCCCC
Q 035663 190 IRFTNTSAHFYDGRNCCKGYFYCLG---SCNFIFRIRFDHPH 228 (297)
Q Consensus 190 ~~~~~~d~v~~~~~~~~~G~~Y~l~---~~g~i~~~d~~~~~ 228 (297)
. .+.+.. +|+..+.. .+|.|..+|+....
T Consensus 307 ~-----~~~~s~-----~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 307 T-----SLIWSP-----HSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp E-----EEEECS-----SSSEEEEEECTTTCEEEEEEEETTE
T ss_pred E-----EEEECC-----CCCeEEEEeecCCCcEEEEecCCcc
Confidence 2 444442 16655542 36789999987653
No 47
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=29.83 E-value=29 Score=22.25 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=22.8
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCe-ecCCC
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQ-VKLPP 133 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~-i~LP~ 133 (297)
|++||.-. .+..+..+.+|..|++. .+-|.
T Consensus 3 ~~~~W~e~---~~~~G~~YYyN~~T~~s~We~P~ 33 (75)
T 2jxw_A 3 SKGRWVEG---ITSEGYHYYYDLISGASQWEKPE 33 (75)
T ss_dssp CCCCEEEE---EETTTEEEEEETTTTEEECSCCS
T ss_pred CCCCcEEE---ECCCCCEEEEECCCCCEeecCCC
Confidence 45789888 56679999999999974 45454
No 48
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=28.33 E-value=2.7e+02 Score=23.95 Aligned_cols=66 Identities=3% Similarity=-0.046 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCCeEEEEecCCCceEeeccCcccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCCC
Q 035663 158 DCLVLASLYVSSKLAFCRPGDRNWTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPHA 229 (297)
Q Consensus 158 ~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~ 229 (297)
.|.|+.+....+.+.+|+..++.=-..... .. |.+|....-.-.|-++++.+.|.++.+.++....
T Consensus 270 kygviyviTK~G~ihlyDleTgt~i~~nrI-----S~-d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 270 KHDVVFLITKYGYIHLYDLETGTCIYMNRI-----SG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CS-SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred cCCEEEEEeCCcEEEEEEcccCcEEEEecc-----CC-CceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 344444445578889999887763322211 11 3333210001127789999999999999887754
No 49
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=28.16 E-value=61 Score=17.66 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.9
Q ss_pred CCeEEEEeecCCCccEEEEcCCCCCe
Q 035663 103 HGWLLTVSCLDETQNMFLLHPFTRSQ 128 (297)
Q Consensus 103 ~Gwll~~~~~~~~~~~~l~NP~T~~~ 128 (297)
.||-.. .+..+..+.+|-.|++.
T Consensus 10 ~gW~~~---~d~~Gr~YY~n~~T~~t 32 (40)
T 2ysh_A 10 PGWQSY---LSPQGRRYYVNTTTNET 32 (40)
T ss_dssp TTCEEE---ECTTSCEEEECSSSCCE
T ss_pred CCceEE---ECCCCCEEEEECCCCCE
Confidence 678877 66678999999999974
No 50
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=27.79 E-value=62 Score=17.44 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=20.9
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCe-ecCC
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQ-VKLP 132 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~-i~LP 132 (297)
..+|... .+.++..+.+|..|++. .+-|
T Consensus 5 ~~~W~e~---~~~~G~~YYyN~~T~es~We~P 33 (37)
T 1e0l_A 5 VSEWTEY---KTADGKTYYYNNRTLESTWEKP 33 (37)
T ss_dssp SCSCEEE---ECTTSCEEEEETTTTEEESSCC
T ss_pred CCCeEEE---ECCCCCEEEEECCCCCEEecCC
Confidence 3578888 56668889999999974 4444
No 51
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=27.74 E-value=2.1e+02 Score=22.07 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=55.3
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCCc
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDRN 180 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~ 180 (297)
..+|-+.+ .+..+.++.+|+-++....++... ... ...+..++. +. . .+.......+..+..+...
T Consensus 75 ~~~g~l~v---~~~~~~i~~~d~~~~~~~~~~~~~-~~~-------p~~i~~~~~-g~-l-~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 75 DGAGTVYV---TDFNNRVVTLAAGSNNQTVLPFDG-LNY-------PEGLAVDTQ-GA-V-YVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp CTTCCEEE---EETTTEEEEECTTCSCCEECCCCS-CSS-------EEEEEECTT-CC-E-EEEEGGGTEEEEECTTCCS
T ss_pred CCCCCEEE---EcCCCEEEEEeCCCceEeeeecCC-cCC-------CcceEECCC-CC-E-EEEECCCCEEEEEECCCce
Confidence 55665555 233678899998776655443321 111 123334443 23 2 2222234677777666554
Q ss_pred eEeeccCcccccCCcCeEEeCCccccCCeEEEecc-CCcEEEEecCCCC
Q 035663 181 WTSIVHDQYIRFTNTSAHFYDGRNCCKGYFYCLGS-CNFIFRIRFDHPH 228 (297)
Q Consensus 181 W~~~~~~~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~~~~ 228 (297)
........+. ...++++.. +|++|+.+. ++.|..+|.....
T Consensus 141 ~~~~~~~~~~--~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 141 QTVLPFTGLN--DPDGVAVDN-----SGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CEECCCCSCC--SCCCEEECT-----TCCEEEEEGGGTEEEEECTTTCC
T ss_pred eEeeccccCC--CceeEEEeC-----CCCEEEEECCCCEEEEEecCCCc
Confidence 3332211110 111455442 288998876 4589999987654
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=27.71 E-value=2.2e+02 Score=22.31 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=49.6
Q ss_pred cceEEEecCCCcEEe-cCCCCCCCCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeec-CCCCCCCCCceeecCceEE
Q 035663 73 QSCTFFNPKTKKFRE-IPLPEVKGRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVK-LPPPPPGTQLQFLNGLRVI 149 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~~~~~~~~ 149 (297)
+...+||..+++... +..... .-..+. +.+|.++. ...++.+.++|.-+++.+. +..... .+ ..
T Consensus 205 g~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~---~~~dg~v~iwd~~~~~~~~~~~~~~~--~i-------~~ 271 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNGDIVS---CGEDRTVRIWSKENGSLKQVITLPAI--SI-------WS 271 (313)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSCEEE---EETTSEEEEECTTTCCEEEEEECSSS--CE-------EE
T ss_pred CeEEEEECCchhhhhhhhcCCc-eEEEEEEecCCCEEE---EecCCEEEEEECCCCceeEEEeccCc--eE-------EE
Confidence 456677777664332 222111 111222 56776655 4567889999998887543 211110 11 12
Q ss_pred EecCCCCCCEEEEEEeCCCCeEEEEecCCCceEe
Q 035663 150 TSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTS 183 (297)
Q Consensus 150 ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~ 183 (297)
+...|+. .++ + ...++.+.+|+...+.+..
T Consensus 272 ~~~~~~~-~~~--~-~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 272 VDCMSNG-DII--V-GSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEECTTS-CEE--E-EETTSCEEEEESCGGGCCC
T ss_pred EEEccCC-CEE--E-EeCCCcEEEEeCCCCceee
Confidence 3334443 232 2 3357889999987776554
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=26.81 E-value=3.3e+02 Score=24.03 Aligned_cols=131 Identities=8% Similarity=-0.004 Sum_probs=66.3
Q ss_pred cceEEEecCCCcEEecCCCCCCCCce-EE-eeCC-eEEEEeecCCCccEEEEcCCCCCeecC-CCCCCCCCceeecCceE
Q 035663 73 QSCTFFNPKTKKFREIPLPEVKGRWV-SC-SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKL-PPPPPGTQLQFLNGLRV 148 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~L-P~~~~~~~~~~~~~~~~ 148 (297)
....+|+..+++.....+......-. +. +.+| +|+. ...++.+.++|.-+++.+.- .... ...+ .
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~---~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v-------~ 535 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA---GDVMGKILLYDLQSREVKTSRWAFR-TSKI-------N 535 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE---EETTSCEEEEETTTTEEEECCSCCC-SSCE-------E
T ss_pred CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE---cCCCCeEEEeeCCCCcceeEeecCC-CCce-------e
Confidence 45667777765442122222111112 22 5566 5555 44568899999999886542 2111 1111 1
Q ss_pred EEecCCC---------CCCEEEEEEeCCCCeEEEEecCCCc--eEeeccC--cccccCCcCeEEeCCccccCCeEEEecc
Q 035663 149 ITSTSPL---------DPDCLVLASLYVSSKLAFCRPGDRN--WTSIVHD--QYIRFTNTSAHFYDGRNCCKGYFYCLGS 215 (297)
Q Consensus 149 ~ls~~p~---------~~~~~Vv~~~~~~~~l~~~~~g~~~--W~~~~~~--~~~~~~~~d~v~~~~~~~~~G~~Y~l~~ 215 (297)
.+...|. ++.+.+.+ ..++.+.+|+..+.. -..+... ... ++.+.. +|++...+.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~h~~~v~-----~l~~s~-----~~~l~s~~~ 603 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATG--SLDTNIFIYSVKRPMKIIKALNAHKDGVN-----NLLWET-----PSTLVSSGA 603 (615)
T ss_dssp EEEECCCC------CCSCCEEEEE--ETTSCEEEEESSCTTCCEEETTSSTTCEE-----EEEEEE-----TTEEEEEET
T ss_pred EEEEcCccccccccccCCCEEEEE--cCCCcEEEEECCCCceechhhhcCccceE-----EEEEcC-----CCCeEEecC
Confidence 2333442 34455443 347889999887542 2222111 111 444442 166555556
Q ss_pred CCcEEEEecCC
Q 035663 216 CNFIFRIRFDH 226 (297)
Q Consensus 216 ~g~i~~~d~~~ 226 (297)
+|.|..+|+..
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 77888888764
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=26.28 E-value=2.4e+02 Score=22.31 Aligned_cols=125 Identities=10% Similarity=-0.017 Sum_probs=62.7
Q ss_pred cceEEEecCCCcEEe-cCCCCCCCCceEE-eeCC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEE
Q 035663 73 QSCTFFNPKTKKFRE-IPLPEVKGRWVSC-SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVI 149 (297)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~-s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ 149 (297)
+...+||+.+++... +..+. .-..+. +.+| +++. ...++.+.++|.-+++...+...... + ..
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~~~--v-------~~ 270 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAV---GMESSNVEVLHVNKPDKYQLHLHESC--V-------LS 270 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEE---EETTSCEEEEETTSSCEEEECCCSSC--E-------EE
T ss_pred CcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEE---EcCCCcEEEEECCCCCeEEEcCCccc--e-------eE
Confidence 455667776664322 22221 111222 5555 5555 44568899999988876655432211 1 12
Q ss_pred EecCCCCCCEEEEEEeCCCCeEEEEecCCCceEeec-cC-cccccCCcCeEEeCCccccCCe-EEEeccCCcEEEEec
Q 035663 150 TSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIV-HD-QYIRFTNTSAHFYDGRNCCKGY-FYCLGSCNFIFRIRF 224 (297)
Q Consensus 150 ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~-~~-~~~~~~~~d~v~~~~~~~~~G~-~Y~l~~~g~i~~~d~ 224 (297)
+...|+ +.+.+.+ ..++.+.+|+...+.-.... .. ... .+.+... |+ ++..+.+|.|..+|+
T Consensus 271 ~~~~~~-~~~l~~~--~~dg~i~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~-----~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 271 LKFAYC-GKWFVST--GKDNLLNAWRTPYGASIFQSKESSSVL-----SCDISVD-----DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTT-SSEEEEE--ETTSEEEEEETTTCCEEEEEECSSCEE-----EEEECTT-----SCEEEEEETTSCEEEEEE
T ss_pred EEECCC-CCEEEEe--cCCCcEEEEECCCCeEEEEecCCCcEE-----EEEECCC-----CCEEEEecCCCeEEEEEE
Confidence 233332 3454433 34778999987665432111 11 112 3444321 44 444455778888875
No 55
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=26.26 E-value=2.7e+02 Score=22.77 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=51.0
Q ss_pred CCCeEEEEecCCCceEeeccC-ccc--ccCCcCeEEeCCccccCCe-EEEeccC--CcEEEEecCCC--CCCceecCCCC
Q 035663 167 VSSKLAFCRPGDRNWTSIVHD-QYI--RFTNTSAHFYDGRNCCKGY-FYCLGSC--NFIFRIRFDHP--HAPTAEAMPFK 238 (297)
Q Consensus 167 ~~~~l~~~~~g~~~W~~~~~~-~~~--~~~~~d~v~~~~~~~~~G~-~Y~l~~~--g~i~~~d~~~~--~~~~~~~~p~~ 238 (297)
.++.+.+|+..++....+... ... .....++.+.. +|+ +|+.... +.|.+|+++.. ........+..
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-----dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-----DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-----TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-----CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 356777777665555443321 000 00011344442 166 6666555 57888888632 22110011110
Q ss_pred CCccccCCceeEEeeeCCcEEEEEEEccCCCCCCCCceeeEEEEEEECCCCceeec
Q 035663 239 PHEYCCNARYNYLVELNSDLFIVSRFLIPHKSYPCELTCAFIVCKLDLETEKWIMV 294 (297)
Q Consensus 239 ~~~~~~~~~~~~LVes~G~LllV~~~~~~~~~~~~~~~~~~~V~~ld~~~~~W~~v 294 (297)
......-+.-+|+.+++.... ...+.||++|.++++-.++
T Consensus 306 ------~~~~~~~~spdg~~l~~~~~~----------~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 306 ------IHPRNFIITPNGKYLLVACRD----------TNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp ------SCCCEEEECTTSCEEEEEETT----------TTEEEEEEECTTTCCEEEC
T ss_pred ------CCCceEEECCCCCEEEEEECC----------CCCEEEEEEECCCCcEeec
Confidence 001112223347766554322 3467888888877665544
No 56
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=25.49 E-value=53 Score=23.88 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=17.8
Q ss_pred ceeeEEEEEEECCCCceeecc
Q 035663 275 LTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 275 ~~~~~~V~~ld~~~~~W~~v~ 295 (297)
.+..+.||++|.++++|+|.+
T Consensus 34 ~a~~v~vY~f~~~~~~W~K~~ 54 (134)
T 2lyd_A 34 SSSHVAFYTFNSSQNEWEKTD 54 (134)
T ss_dssp EEEEEEEEEEETTTTEEEEEE
T ss_pred hCCeEEEEEecCCcCceeEcC
Confidence 467789999999999999864
No 57
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=25.24 E-value=2.6e+02 Score=22.31 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred EEEeCCCCeEEEEec-CCCceEeeccC-cccccCCcCeEEe-CCccccCCeEEEeccCCcEEEEecCCCCCCceecCCCC
Q 035663 162 LASLYVSSKLAFCRP-GDRNWTSIVHD-QYIRFTNTSAHFY-DGRNCCKGYFYCLGSCNFIFRIRFDHPHAPTAEAMPFK 238 (297)
Q Consensus 162 v~~~~~~~~l~~~~~-g~~~W~~~~~~-~~~~~~~~d~v~~-~~~~~~~G~~Y~l~~~g~i~~~d~~~~~~~~~~~~p~~ 238 (297)
+.+......+..+.. |...|..-... ... .++.- + |.+|+-+.+|.|..+|. ..........+.
T Consensus 228 l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~------g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~- 294 (330)
T 3hxj_A 228 IYVTSLDGHLYAINPDGTEKWRFKTGKRIES-----SPVIGNT------DTIYFGSYDGHLYAINP-DGTEKWNFETGS- 294 (330)
T ss_dssp EEEEETTTEEEEECTTSCEEEEEECSSCCCS-----CCEECTT------SCEEEECTTCEEEEECT-TSCEEEEEECSS-
T ss_pred EEEEcCCCeEEEECCCCCEeEEeeCCCCccc-----cceEcCC------CeEEEecCCCCEEEECC-CCcEEEEEEcCC-
Q ss_pred CCccccCCceeEEeeeCCcEEE
Q 035663 239 PHEYCCNARYNYLVELNSDLFI 260 (297)
Q Consensus 239 ~~~~~~~~~~~~LVes~G~Lll 260 (297)
.....-+++.+|+|++
T Consensus 295 ------~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 295 ------WIIATPVIDENGTIYF 310 (330)
T ss_dssp ------CCCSCCEECTTCCEEE
T ss_pred ------ccccceEEcCCCEEEE
No 58
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=23.25 E-value=2e+02 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=15.4
Q ss_pred CeEEEecc-CCcEEEEecCCC
Q 035663 208 GYFYCLGS-CNFIFRIRFDHP 227 (297)
Q Consensus 208 G~~Y~l~~-~g~i~~~d~~~~ 227 (297)
|.+|+.+. ++.|+.+|.+..
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~ 63 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGN 63 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCC
T ss_pred CCEEEEeCCCCeEEEECCCCc
Confidence 88888875 568888887654
No 59
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=22.83 E-value=62 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.4
Q ss_pred ceeeEEEEEEECCCCceeecc
Q 035663 275 LTCAFIVCKLDLETEKWIMVN 295 (297)
Q Consensus 275 ~~~~~~V~~ld~~~~~W~~v~ 295 (297)
.+..+.||+.|.++.+|+|.+
T Consensus 40 ~t~hasvYkfd~~~~eW~K~~ 60 (231)
T 1q67_A 40 HTPHASLYKWDFKKDEWNKLE 60 (231)
T ss_dssp EEEEEEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEEecCCCCceEecC
Confidence 477889999999999999875
No 60
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=22.43 E-value=69 Score=16.98 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCeEEEEeecCCCccEEEEcCCCCCe
Q 035663 103 HGWLLTVSCLDETQNMFLLHPFTRSQ 128 (297)
Q Consensus 103 ~Gwll~~~~~~~~~~~~l~NP~T~~~ 128 (297)
.||-.. .+..+..+.+|-.|++.
T Consensus 6 ~gW~~~---~~~~G~~Yy~n~~t~~t 28 (37)
T 1e0m_A 6 PGWDEY---KTHNGKTYYYNHNTKTS 28 (37)
T ss_dssp TTEEEE---ECSSCCEEEEETTTTEE
T ss_pred CCcEEE---ECCCCCEEEEECCCCCe
Confidence 578877 56678899999999864
No 61
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=21.73 E-value=2.9e+02 Score=21.50 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=63.6
Q ss_pred ceEEEecCCCcEEecCCCCCC-CCceEE-eeCCeEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceEEEe
Q 035663 74 SCTFFNPKTKKFREIPLPEVK-GRWVSC-SSHGWLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRVITS 151 (297)
Q Consensus 74 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~-s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~~ls 151 (297)
....+++ +++...+..+... ....+. ..+|-+.+. ....+.++.+|+ +++...++....... ...+.
T Consensus 121 ~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~-------~~~i~ 189 (299)
T 2z2n_A 121 RIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT--ENQNNAIGRITE-SGDITEFKIPTPASG-------PVGIT 189 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCC-------EEEEE
T ss_pred eEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE--eCCCCEEEEEcC-CCcEEEeeCCCCCCc-------ceeEE
Confidence 3445666 4444433333211 122333 556766652 223478999999 887654321111111 12233
Q ss_pred cCCCCCCEEEEEEeCCCCeEEEEecCCCceEeeccC-cccccCCcCeEEeCCccccCCeEEEecc-CCcEEEEecC
Q 035663 152 TSPLDPDCLVLASLYVSSKLAFCRPGDRNWTSIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGS-CNFIFRIRFD 225 (297)
Q Consensus 152 ~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~-~g~i~~~d~~ 225 (297)
.++. +. . .+.......+..+.+ ++........ ... ....+.+.. +|.+|+.+. .+.|..+|.+
T Consensus 190 ~~~~-g~-l-~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~--~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 190 KGND-DA-L-WFVEIIGNKIGRITT-SGEITEFKIPTPNA--RPHAITAGA-----GIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ECTT-SS-E-EEEETTTTEEEEECT-TCCEEEEECSSTTC--CEEEEEECS-----TTCEEEEETTTTEEEEEETT
T ss_pred ECCC-CC-E-EEEccCCceEEEECC-CCcEEEEECCCCCC--CceeEEECC-----CCCEEEeccCCceEEEECCC
Confidence 4443 33 2 222223567888887 6665544222 110 001333332 288888874 4689999984
No 62
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=21.70 E-value=1e+02 Score=16.95 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.3
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCe
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQ 128 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~ 128 (297)
..+|.-. ...++..+.+|..|++.
T Consensus 9 ~~~W~e~---~~~~G~~YYyN~~T~eS 32 (40)
T 2ysi_A 9 EEIWVEN---KTPDGKVYYYNARTRES 32 (40)
T ss_dssp CCSEEEE---ECTTSCEEEEETTTCCE
T ss_pred CCCCEEE---ECCCCCEEEEECCCCCE
Confidence 3578887 56678889999999974
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=21.41 E-value=3.4e+02 Score=22.29 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=55.8
Q ss_pred eeCCeEEEEeecCCCccEEEEcCCCCCeec-CCCCCCCCCceeecCceEEEecCCCCCCEEEEEEeCCCCeEEEEecCCC
Q 035663 101 SSHGWLLTVSCLDETQNMFLLHPFTRSQVK-LPPPPPGTQLQFLNGLRVITSTSPLDPDCLVLASLYVSSKLAFCRPGDR 179 (297)
Q Consensus 101 s~~Gwll~~~~~~~~~~~~l~NP~T~~~i~-LP~~~~~~~~~~~~~~~~~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~ 179 (297)
+.+|.++. ...++.+.++|.-+++.+. +..... .+ ..+.+ .|. +.+.+.+ ..++.+.+|+....
T Consensus 215 ~~~~~~~~---~~~~g~i~~~d~~~~~~~~~~~~~~~--~i-----~~~~~--~~~-~~~l~~~--~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 215 VDDDKFVI---PGPKGAIFVYQITEKTPTGKLIGHHG--PI-----SVLEF--NDT-NKLLLSA--SDDGTLRIWHGGNG 279 (425)
T ss_dssp EETTEEEE---ECGGGCEEEEETTCSSCSEEECCCSS--CE-----EEEEE--ETT-TTEEEEE--ETTSCEEEECSSSB
T ss_pred cCCCEEEE---EcCCCeEEEEEcCCCceeeeeccCCC--ce-----EEEEE--CCC-CCEEEEE--cCCCEEEEEECCCC
Confidence 56777777 5556899999998876432 221111 11 12233 333 3454433 34678888886644
Q ss_pred ceEe-ec-cC-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCCCC
Q 035663 180 NWTS-IV-HD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDHPH 228 (297)
Q Consensus 180 ~W~~-~~-~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~~~ 228 (297)
.-.. +. .. ... .+.+.. +|.++..+.+|.|..+|+....
T Consensus 280 ~~~~~~~~~~~~i~-----~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 280 NSQNCFYGHSQSIV-----SASWVG-----DDKVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp SCSEEECCCSSCEE-----EEEEET-----TTEEEEEETTSEEEEEETTTTE
T ss_pred ccceEecCCCccEE-----EEEECC-----CCEEEEEeCCCcEEEEECCCCc
Confidence 3111 11 11 112 444543 1655555667899999987654
No 64
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=20.83 E-value=95 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=23.2
Q ss_pred eCCeEEEEeecCCCccEEEEcCCCCCe-ecCCCC
Q 035663 102 SHGWLLTVSCLDETQNMFLLHPFTRSQ-VKLPPP 134 (297)
Q Consensus 102 ~~Gwll~~~~~~~~~~~~l~NP~T~~~-i~LP~~ 134 (297)
..||... .+..+..|.+|..|++. .+.|..
T Consensus 42 p~gW~~~---~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 42 ENGWKAA---KTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HHTCEEE---ECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCeEEEE---ECCCCCEEEEECCCCCEECCCCCC
Confidence 4699888 67778999999999974 455554
No 65
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=20.11 E-value=3.4e+02 Score=21.72 Aligned_cols=131 Identities=8% Similarity=0.045 Sum_probs=64.0
Q ss_pred cceEEEecCC-CcEEecCCCCCCCCc-eEE-eeCC-eEEEEeecCCCccEEEEcCCCCCeecCCCCCCCCCceeecCceE
Q 035663 73 QSCTFFNPKT-KKFREIPLPEVKGRW-VSC-SSHG-WLLTVSCLDETQNMFLLHPFTRSQVKLPPPPPGTQLQFLNGLRV 148 (297)
Q Consensus 73 ~~~~~~~~~~-~~~~~~~~p~~~~~~-~~~-s~~G-wll~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~~~~~~~~ 148 (297)
+...+|+..+ ++.....+......- .+. +.+| +|+. ...++.+.++|.-+++.+.+..... .+ ..+
T Consensus 64 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~dg~v~iwd~~~~~~~~~~~~~~--~v-----~~~ 133 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT---ASCDKTAKMWDLSSNQAIQIAQHDA--PV-----KTI 133 (368)
T ss_dssp SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE---EETTSEEEEEETTTTEEEEEEECSS--CE-----EEE
T ss_pred CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE---EcCCCcEEEEEcCCCCceeeccccC--ce-----EEE
Confidence 4566777775 333211111111111 122 5455 5655 4556889999998888665432211 11 112
Q ss_pred EEecCCCCCCEEEEEEeCCCCeEEEEecCCCceE-eeccC-cccccCCcCeEEeCCccccCCeEEEeccCCcEEEEecCC
Q 035663 149 ITSTSPLDPDCLVLASLYVSSKLAFCRPGDRNWT-SIVHD-QYIRFTNTSAHFYDGRNCCKGYFYCLGSCNFIFRIRFDH 226 (297)
Q Consensus 149 ~ls~~p~~~~~~Vv~~~~~~~~l~~~~~g~~~W~-~~~~~-~~~~~~~~d~v~~~~~~~~~G~~Y~l~~~g~i~~~d~~~ 226 (297)
.+...|. +.+.+. ...++.+.+|+.....-. .+... ... .+.... ..++..+.++.+..+|+..
T Consensus 134 ~~~~~~~-~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 134 HWIKAPN-YSCVMT--GSWDKTLKFWDTRSSNPMMVLQLPERCY-----CADVIY------PMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EEEECSS-CEEEEE--EETTSEEEEECSSCSSCSEEEECSSCEE-----EEEEET------TEEEEEEGGGCEEEEECSS
T ss_pred EEEeCCC-CCEEEE--ccCCCcEEEEECCCCcEEEEEecCCCce-----EEEecC------CeeEEEeCCCcEEEEEecc
Confidence 3322322 233332 334788889887644311 11111 111 223334 5666666677888888765
Q ss_pred C
Q 035663 227 P 227 (297)
Q Consensus 227 ~ 227 (297)
.
T Consensus 200 ~ 200 (368)
T 3mmy_A 200 Q 200 (368)
T ss_dssp S
T ss_pred c
Confidence 4
Done!