BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035666
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K1Q|B Chain B, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1027

 Score = 27.7 bits (60), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 71  PQYIVQIVNTCVSGCAPSDIHLH------CGWFASA 100
           P  IVQIVN C +    S I +       C WFAS+
Sbjct: 226 PTQIVQIVNECANNLLNSTIPISLRPTILCPWFASS 261


>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
          Length = 323

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 46  FHEDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSG-----CAPSDIHLHCGWFASA 100
           F+  K+  +  DI  S SKD+   IP  ++QI N+  +G     C    I  H   F + 
Sbjct: 181 FYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPARFPAK 240

Query: 101 RVVNPRTFKRV--SYDDCLVN 119
               P  F R+    DD +V+
Sbjct: 241 L---PEFFIRMLTEPDDLVVD 258


>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
 pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
          Length = 1214

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 71  PQYIVQIVNTCVSGCAPSDIHLH------CGWFASA 100
           P  IVQIVN C +    S I +       C WFAS+
Sbjct: 413 PTQIVQIVNECANNLLNSTIPISLRPTILCPWFASS 448


>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1196

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 71  PQYIVQIVNTCVSGCAPSDIHLH------CGWFASA 100
           P  IVQIVN C +    S I +       C WFAS+
Sbjct: 395 PTQIVQIVNECANNLLNSTIPISLRPTILCPWFASS 430


>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With Peg400
 pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With Peg400
 pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With 9r,13r-Opda
 pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With 9r,13r-Opda
 pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato
 pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato
 pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
 pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
          Length = 376

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 27  IIFCNLGELSGISNKISHSFHEDKSSCTNRDIS---ISQSKD----------STSGIPQY 73
           I FC +  +  +SNK      ED  SCT+R ++   +S   D          +T  IPQ 
Sbjct: 106 IFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQI 165

Query: 74  I----VQIVNTCVSGCAPSDIHLHCGWF 97
           +    V   N   +G    +IH   G+ 
Sbjct: 166 VNEFRVAARNAIEAGFDGVEIHGAHGYL 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,699,987
Number of Sequences: 62578
Number of extensions: 129045
Number of successful extensions: 263
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 5
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)