Query 035666
Match_columns 152
No_of_seqs 103 out of 133
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3isy_A Bsupi, intracellular pr 38.2 1.1E+02 0.0039 22.2 6.9 80 56-138 5-88 (120)
2 3vhs_A ATPase wrnip1; zinc fin 36.2 13 0.00045 21.4 1.0 14 69-87 1-14 (29)
3 3d30_A YOAJ, expansin like pro 36.1 12 0.00041 29.5 1.2 40 72-113 64-103 (208)
4 2hm3_A Nematocyst outer WALL a 31.6 15 0.00052 21.3 0.8 11 76-86 3-13 (31)
5 2hcz_X Beta-expansin 1A; domai 25.3 61 0.0021 26.2 3.7 54 73-135 89-153 (245)
6 1b4r_A Protein (PKD1_human); P 22.1 42 0.0014 22.8 1.8 24 119-142 34-59 (80)
7 3e8v_A Possible transglutamina 21.2 56 0.0019 22.8 2.3 20 119-139 10-29 (82)
8 1n10_A PHL P I, pollen allerge 20.7 95 0.0033 25.0 3.9 54 73-135 89-153 (241)
9 3idu_A Uncharacterized protein 19.2 2.7E+02 0.0091 20.1 6.5 66 54-137 15-83 (127)
10 2ahn_A Thaumatin-like protein; 17.9 66 0.0023 25.9 2.4 18 118-135 27-44 (222)
No 1
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=38.25 E-value=1.1e+02 Score=22.23 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCceEEEeecCCCCcceEEEEEEeCCcCCCCccceEEecCCccceeeeCC--cceeeecCCceE--EeCCccCCCCCeeE
Q 035666 56 RDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNP--RTFKRVSYDDCL--VNGGMPLRPSQVIR 131 (152)
Q Consensus 56 sDI~V~Q~~tg~~G~Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP--~lfrr~~~d~CL--Vn~G~pI~~g~~Vs 131 (152)
.++.++-+....++.+++.++|+|.=...| .+..+=+--.--+..|+ +.+-|-|.+.|- .-.-..|.+|++..
T Consensus 5 ~~l~~~v~~~~~g~~v~~~ltv~N~s~~~v---~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~ 81 (120)
T 3isy_A 5 QEVVLSIDAIQEPEQIKFNMSLKNQSERAI---EFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYD 81 (120)
T ss_dssp CSEEEEEEEEECSSCEEEEEEEEECSSSCE---EEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEE
T ss_pred cEEEEEEeeccCCCeEEEEEEEEcCCCCcE---EEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEE
Confidence 356666555557789999999999875334 22222233223334443 222235555442 12234688999999
Q ss_pred EEeccCC
Q 035666 132 FTYSNSF 138 (152)
Q Consensus 132 F~YAws~ 138 (152)
|+-.|+.
T Consensus 82 f~~~w~~ 88 (120)
T 3isy_A 82 FSDVWKE 88 (120)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999994
No 2
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.16 E-value=13 Score=21.36 Aligned_cols=14 Identities=43% Similarity=0.973 Sum_probs=6.6
Q ss_pred CcceEEEEEEeCCcCCCCc
Q 035666 69 GIPQYIVQIVNTCVSGCAP 87 (152)
Q Consensus 69 G~Pef~VtI~N~C~~~C~~ 87 (152)
|.|||+|+ || -|.|
T Consensus 1 gspef~vq----cp-vcqq 14 (29)
T 3vhs_A 1 GSPEFQVQ----CP-VCQQ 14 (29)
T ss_dssp ----CEEE----CT-TTCC
T ss_pred CCCceeee----Ch-HHHH
Confidence 67999997 64 4544
No 3
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=36.15 E-value=12 Score=29.49 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=30.5
Q ss_pred eEEEEEEeCCcCCCCccceEEecCCccceeeeCCcceeeecC
Q 035666 72 QYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSY 113 (152)
Q Consensus 72 ef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~lfrr~~~ 113 (152)
.=.|+|++.|| .|+..++-|+=..|...-..+..++. +.+
T Consensus 64 sv~V~v~D~CP-~C~~~~~DLS~~aF~~la~~~~G~i~-v~~ 103 (208)
T 3d30_A 64 KTTVYVTDLYP-EGARGALDLSPNAFRKIGNMKDGKIN-IKW 103 (208)
T ss_dssp EEEEEEEEECT-TCCTTCEEECHHHHHHHSCGGGSSEE-EEE
T ss_pred cEEEEEEECCC-CCCCCeEECCHHHHHHhcccCCCEEE-EEE
Confidence 35799999997 79999999998888765555666663 443
No 4
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=31.61 E-value=15 Score=21.32 Aligned_cols=11 Identities=64% Similarity=1.232 Sum_probs=5.7
Q ss_pred EEEeCCcCCCC
Q 035666 76 QIVNTCVSGCA 86 (152)
Q Consensus 76 tI~N~C~~~C~ 86 (152)
+|+-+|+|+|.
T Consensus 3 qitgtcpsgcs 13 (31)
T 2hm3_A 3 QITGTCPSGCS 13 (31)
T ss_dssp ----CCCTTCC
T ss_pred cccccCCCCcC
Confidence 67888998884
No 5
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=25.27 E-value=61 Score=26.19 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=34.2
Q ss_pred EEEEEEeCCcCCC--CccceEEecCCccceee-------eCCcceeeecCC--ceEEeCCccCCCCCeeEEEec
Q 035666 73 YIVQIVNTCVSGC--APSDIHLHCGWFASARV-------VNPRTFKRVSYD--DCLVNGGMPLRPSQVIRFTYS 135 (152)
Q Consensus 73 f~VtI~N~C~~~C--~~s~V~L~C~gF~Sa~~-------VDP~lfrr~~~d--~CLVn~G~pI~~g~~VsF~YA 135 (152)
-.|+|++.|+ | +..++.|+=..|...-. .+..++. +.+. .|-..+ |..|+|+.-
T Consensus 89 v~V~VtD~C~--C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~-V~yrrV~C~~~g------g~ni~f~v~ 153 (245)
T 2hcz_X 89 VTVYITDMNY--EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMD-VEFRRVRCKYPA------GQKIVFHIE 153 (245)
T ss_dssp EEEEEEEECC--CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEE-EEEEEECCCCST------TCCCEEEEC
T ss_pred EEEEEEeccC--CCCCCccEEcCHHHHHHHhccccccccccCCEEE-EEEEEEecCCCC------CCcEEEEEc
Confidence 5899999997 8 67888888888875432 3455553 4332 463332 235666664
No 6
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=22.08 E-value=42 Score=22.79 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=12.4
Q ss_pred eCCccC--CCCCeeEEEeccCCcccc
Q 035666 119 NGGMPL--RPSQVIRFTYSNSFMYPI 142 (152)
Q Consensus 119 n~G~pI--~~g~~VsF~YAws~~fpL 142 (152)
.||.+. ..+..++-+|+-.-.|..
T Consensus 34 GDGs~~~~s~~~~~tHtY~~~G~YtV 59 (80)
T 1b4r_A 34 GDGSAEVDAAGPAASHRYVLPGRYHV 59 (80)
T ss_dssp CSSCCEEEEETTEEEEEECSSEEEEE
T ss_pred CCCCcccccCCCCCEEECCCCcEEEE
Confidence 455553 345556666665544443
No 7
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=21.19 E-value=56 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.1
Q ss_pred eCCccCCCCCeeEEEeccCCc
Q 035666 119 NGGMPLRPSQVIRFTYSNSFM 139 (152)
Q Consensus 119 n~G~pI~~g~~VsF~YAws~~ 139 (152)
.+|+|+ +|..|.|.|-|...
T Consensus 10 ~~GkPV-~gA~Vefe~yNyae 29 (82)
T 3e8v_A 10 AEGQPV-ADATVEFKVYNYAE 29 (82)
T ss_dssp TTSCBC-TTCEEEEEEEETTE
T ss_pred CCCCCC-CCCEEEEEEEEchh
Confidence 579998 47899999888643
No 8
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=20.75 E-value=95 Score=25.04 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=35.0
Q ss_pred EEEEEEeCCcCCC--CccceEEecCCccceee-------eCCcceeeecCC--ceEEeCCccCCCCCeeEEEec
Q 035666 73 YIVQIVNTCVSGC--APSDIHLHCGWFASARV-------VNPRTFKRVSYD--DCLVNGGMPLRPSQVIRFTYS 135 (152)
Q Consensus 73 f~VtI~N~C~~~C--~~s~V~L~C~gF~Sa~~-------VDP~lfrr~~~d--~CLVn~G~pI~~g~~VsF~YA 135 (152)
=.|+|++.|. | +..++.|+=..|...-. .+..++. +.+. .|-..+| ..|+|+.-
T Consensus 89 v~V~VtD~C~--C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~-V~yrrV~C~~~gg------~~i~f~v~ 153 (241)
T 1n10_A 89 VVVHITDDNE--EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELE-LQFRRVKCKYPEG------TKVTFHVE 153 (241)
T ss_dssp EEEEEEEECS--SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEE-EEEEECCCCCCTT------CCCEEEEC
T ss_pred EEEEEeEecC--CCCCCcceecCHHHHHHhhccCcccccccCCEEE-EEEEEEeCCCCCC------CceEEEEc
Confidence 4899999996 9 56788888888885433 4555553 4442 4733322 35677666
No 9
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=19.16 E-value=2.7e+02 Score=20.11 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCCceEEEeecC---CCCcceEEEEEEeCCcCCCCccceEEecCCccceeeeCCcceeeecCCceEEeCCccCCCCCee
Q 035666 54 TNRDISISQSKDS---TSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVI 130 (152)
Q Consensus 54 s~sDI~V~Q~~tg---~~G~Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~lfrr~~~d~CLVn~G~pI~~g~~V 130 (152)
...|+.|.-+... .+-.-++.|+|.|.=. .+.++..|.- -+|=.+.. .....|++|++-
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G~--~~a~~~~V~l-------yvng~~v~---------t~~v~La~G~s~ 76 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGG--IGVPSTKVRV-------YINGTLYK---------NWTVSLGPKEEK 76 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECSS--SCEEEEEEEE-------EETTEEEE---------EEEEEECTTCEE
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECCC--CccCCcEEEE-------EECCEEEe---------eEEeccCCCCeE
Confidence 4678888443222 3444469999999864 5544444322 11222111 112258899887
Q ss_pred EEEeccC
Q 035666 131 RFTYSNS 137 (152)
Q Consensus 131 sF~YAws 137 (152)
+++|.|.
T Consensus 77 tv~f~~~ 83 (127)
T 3idu_A 77 VLTFNWT 83 (127)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 7777775
No 10
>2ahn_A Thaumatin-like protein; allergen; 1.30A {Prunus avium}
Probab=17.86 E-value=66 Score=25.93 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=14.6
Q ss_pred EeCCccCCCCCeeEEEec
Q 035666 118 VNGGMPLRPSQVIRFTYS 135 (152)
Q Consensus 118 Vn~G~pI~~g~~VsF~YA 135 (152)
..+|..|.+|++.+|+=.
T Consensus 27 ~~gG~~L~~G~s~s~~~p 44 (222)
T 2ahn_A 27 STTGFELASQASFQLDTP 44 (222)
T ss_dssp SCSBCCBCTTCEEEEECC
T ss_pred CCCcEEcCCCCEEEEecC
Confidence 467899999999988744
Done!