Query 035666
Match_columns 152
No_of_seqs 103 out of 133
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neia_ d.253.1.1 (A:) Hypothe 30.7 10 0.00073 23.8 1.5 32 69-106 2-33 (60)
2 d1b4ra_ b.1.3.1 (A:) Polycyste 26.7 14 0.001 23.4 1.8 12 122-133 8-19 (80)
3 d3brda3 b.42.7.1 (A:381-541) D 21.7 51 0.0037 24.0 4.3 46 88-137 73-123 (161)
4 d1cr5a2 d.31.1.1 (A:108-210) C 19.9 41 0.003 22.3 3.2 28 120-148 41-68 (103)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 16.7 41 0.003 20.7 2.4 23 59-81 19-42 (63)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 15.4 41 0.003 18.4 1.8 10 21-30 13-22 (33)
7 d1v43a2 b.40.6.3 (A:304-373) H 12.4 73 0.0053 18.4 2.7 31 116-146 35-65 (70)
8 d1qcsa2 d.31.1.1 (A:86-201) C- 11.1 77 0.0056 21.3 2.7 28 120-148 41-68 (116)
9 d1ze3h1 b.2.3.2 (H:159-279) Ma 10.5 2E+02 0.014 18.1 7.0 72 67-145 17-95 (121)
10 d1f00i1 b.1.14.1 (I:658-752) I 9.7 84 0.0061 19.9 2.4 20 117-137 27-46 (95)
No 1
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=30.75 E-value=10 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=20.4
Q ss_pred CcceEEEEEEeCCcCCCCccceEEecCCccceeeeCCc
Q 035666 69 GIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPR 106 (152)
Q Consensus 69 G~Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~ 106 (152)
|+-.|.|||+|.-. +|-++=.-=.-.++.||.
T Consensus 2 gk~~~~lTvTNnnN------GVSVD~e~~~~~~L~~p~ 33 (60)
T d1neia_ 2 GKATYTVTVTNNSN------GVSVDYETETPMTLLVPE 33 (60)
T ss_dssp CCCCEEEEEEETTT------CCEEEEECCCSGGGTCHH
T ss_pred CcceEEEEEEeCCC------ceEecccccCHHHhcChH
Confidence 78889999999986 454443222233566664
No 2
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.71 E-value=14 Score=23.38 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=5.6
Q ss_pred ccCCCCCeeEEE
Q 035666 122 MPLRPSQVIRFT 133 (152)
Q Consensus 122 ~pI~~g~~VsF~ 133 (152)
.|+..|+++.|.
T Consensus 8 ~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 8 GPLASGQLAAFH 19 (80)
T ss_dssp SCCBSSEEEEEE
T ss_pred CCccCCCeEEEE
Confidence 344444444444
No 3
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=21.72 E-value=51 Score=23.96 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=34.8
Q ss_pred cceEEec--CCccceeeeCCcceeeecCCceEEeC---CccCCCCCeeEEEeccC
Q 035666 88 SDIHLHC--GWFASARVVNPRTFKRVSYDDCLVNG---GMPLRPSQVIRFTYSNS 137 (152)
Q Consensus 88 s~V~L~C--~gF~Sa~~VDP~lfrr~~~d~CLVn~---G~pI~~g~~VsF~YAws 137 (152)
+-|+|-| .|.+| +|-++|+++.+.=++.+ ++|+..-..+.|+--.+
T Consensus 73 s~V~Lv~~~TGv~s----ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~dt 123 (161)
T d3brda3 73 SVVKLVDSVTGIAL----PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDN 123 (161)
T ss_dssp CEEEEEETTTCCBC----CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESSC
T ss_pred CEEEEEEcCCCccC----CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCCC
Confidence 3688888 56666 89999999877655666 47898888888876443
No 4
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=19.94 E-value=41 Score=22.29 Aligned_cols=28 Identities=7% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCccCCCCCeeEEEeccCCcccceeeeee
Q 035666 120 GGMPLRPSQVIRFTYSNSFMYPIAFKSAK 148 (152)
Q Consensus 120 ~G~pI~~g~~VsF~YAws~~fpL~~~Sa~ 148 (152)
.|+++.+|+.+-|.|-. ..|.|.+.+..
T Consensus 41 ~~Q~ft~gQ~l~f~f~~-~~l~l~Vk~v~ 68 (103)
T d1cr5a2 41 ESQIFSPTQYLIMEFQG-HFFDLKIRNVQ 68 (103)
T ss_dssp TTCEECTTCEEEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCCCcEEEEEECC-cEEEEEEEEEE
Confidence 68999999999999977 78888887654
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=16.74 E-value=41 Score=20.71 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=17.1
Q ss_pred eEEEeecC-CCCcceEEEEEEeCC
Q 035666 59 SISQSKDS-TSGIPQYIVQIVNTC 81 (152)
Q Consensus 59 ~V~Q~~tg-~~G~Pef~VtI~N~C 81 (152)
.|...+-| -+|.|.|+|+-.|.=
T Consensus 19 ki~~v~LG~~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 19 KQKEVHLAREGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTT
T ss_pred eeeEEeeeeECCEEEEEEEEEeCC
Confidence 34444446 689999999999875
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=15.43 E-value=41 Score=18.40 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=7.6
Q ss_pred HHHHHHhhhh
Q 035666 21 LMMLTIIIFC 30 (152)
Q Consensus 21 ~~~~~~~~~~ 30 (152)
++-|+|++||
T Consensus 13 il~l~ilvfw 22 (33)
T d1xmec1 13 VLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5577888887
No 7
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.43 E-value=73 Score=18.35 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=24.7
Q ss_pred eEEeCCccCCCCCeeEEEeccCCcccceeee
Q 035666 116 CLVNGGMPLRPSQVIRFTYSNSFMYPIAFKS 146 (152)
Q Consensus 116 CLVn~G~pI~~g~~VsF~YAws~~fpL~~~S 146 (152)
..+.+..++..|++|.|....+..+-|.+.+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~~t 65 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDKDT 65 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEETTT
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcchh
Confidence 4566777888999999999988887776654
No 8
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=11.05 E-value=77 Score=21.26 Aligned_cols=28 Identities=11% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCccCCCCCeeEEEeccCCcccceeeeee
Q 035666 120 GGMPLRPSQVIRFTYSNSFMYPIAFKSAK 148 (152)
Q Consensus 120 ~G~pI~~g~~VsF~YAws~~fpL~~~Sa~ 148 (152)
.|+++.+|+.+-|.|-. ..|.|.+.+..
T Consensus 41 ~~Qift~gQ~l~f~f~~-~~l~l~Vk~v~ 68 (116)
T d1qcsa2 41 NNQAFSVGQQLVFSFND-KLFGLLVKDIE 68 (116)
T ss_dssp TTCEEETTCEEEEEETT-EEEEEEEEEEE
T ss_pred CCCCcCCCcEEEEEeCC-cEEEEEEEEEE
Confidence 48899999999999976 88888886643
No 9
>d1ze3h1 b.2.3.2 (H:159-279) Mannose-specific adhesin FimH {Escherichia coli [TaxId: 562]}
Probab=10.52 E-value=2e+02 Score=18.07 Aligned_cols=72 Identities=7% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCcceEEEEEEeCCcCCCCccceEEecCCccceeeeCCcceeeecC-------CceEEeCCccCCCCCeeEEEeccCCc
Q 035666 67 TSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSY-------DDCLVNGGMPLRPSQVIRFTYSNSFM 139 (152)
Q Consensus 67 ~~G~Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~lfrr~~~-------d~CLVn~G~pI~~g~~VsF~YAws~~ 139 (152)
+.|...|.+++ .| ++..+|++.=.| +...-|+.+|+-... +-=|.+++.++..+....+.-.....
T Consensus 17 ~~g~~~f~i~l--~C---~~~~~v~i~f~g--~~~~~~~~~l~~~~~~~~A~GVgI~l~~~~~~i~~~~~~~~~~~~~~~ 89 (121)
T d1ze3h1 17 YPGSVPIPLTV--YC---AKSQNLGYYLSG--TTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSA 89 (121)
T ss_dssp SSCCEECCEEE--EC---SSCEEEEEEEES--CBCSTTSCSBCCCCCSSBCSSEEEEEEETTEECCTTCCEEEEEECSSC
T ss_pred cCccceEEEEE--Ec---CCCCcEEEEEeC--ccCCCCcceEEecCCCCceeEEEEEEecCCeeeecCCcceeeeccCCc
Confidence 56778899998 49 566778876443 334567888874332 13678899999999887777666655
Q ss_pred ccceee
Q 035666 140 YPIAFK 145 (152)
Q Consensus 140 fpL~~~ 145 (152)
+.|.+.
T Consensus 90 ~~l~~~ 95 (121)
T d1ze3h1 90 VSLGLT 95 (121)
T ss_dssp EECCEE
T ss_pred EEEEEE
Confidence 555543
No 10
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Probab=9.67 E-value=84 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=14.6
Q ss_pred EEeCCccCCCCCeeEEEeccC
Q 035666 117 LVNGGMPLRPSQVIRFTYSNS 137 (152)
Q Consensus 117 LVn~G~pI~~g~~VsF~YAws 137 (152)
+..+|.|| +|.+|.|+-...
T Consensus 27 v~D~gnpv-~g~~V~~~~~~g 46 (95)
T d1f00i1 27 VMKGDKPV-SNQEVTFTTTLG 46 (95)
T ss_dssp EEETTEEC-TTCEEEEEESSS
T ss_pred EEECCccc-CCcEEEEEECCC
Confidence 34568898 588999986543
Done!