BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035667
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 50/198 (25%)
Query: 157 HALVLVTLGGNDFVNNYFLTPFAPRRRQFTLPQYCRYLISEYKKILMKLHELGARRVIVT 216
+AL +T GGNDF+ L + Q L+ + L + GAR ++V
Sbjct: 147 NALYYITGGGNDFLQGRILNDVQAQ-------QAAGRLVDS----VQALQQAGARYIVVW 195
Query: 217 GTGPLGCIPAELALSGSPNGECAPEPQQASQIYNS-LLVQMIQELNN--ELNSDVFIASN 273
LG PA G P Q S +N+ L Q+ Q N LN + +
Sbjct: 196 LLPDLGLTPATFG------GPLQPFASQLSGTFNAELTAQLSQAGANVIPLNIPLLL--- 246
Query: 274 AFDKNKDFISNPKNFGFETSNVACCGQGPYNGLGTCNIFSNLCS------------DRSA 321
K+ ++NP +FG N +GTC N C+ D S
Sbjct: 247 -----KEGMANPASFGLAADQ---------NLIGTC-FSGNGCTMNPTYGINGSTPDPSK 291
Query: 322 FVFWDSYHPTERALRLIV 339
+F DS HPT RLI
Sbjct: 292 LLFNDSVHPTITGQRLIA 309
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
pdb|4B5F|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 1)
pdb|4B5G|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|B Chain B, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|C Chain C, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5I|A Chain A, Product Complex Of Neisseria Ap Endonuclease In Presence
Of Metal Ions
pdb|4B5J|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With An
Orphan Adenine Base
pdb|4B5M|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|B Chain B, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|C Chain C, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
Length = 259
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 234 PNGECAPEPQQASQIYNSLLVQMIQELNNE-----LNSDVFIASNAFDKNKDFISNPKNF 288
P+G A E QQ + M++ + NE + D IA D K++ N KN
Sbjct: 111 PSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDL-KNWKGNQKNS 169
Query: 289 GFETSNVACCGQGPYNGLGTCNIFSNLCSDRSAFVFW 325
GF G+ + LG +++ L D + +W
Sbjct: 170 GFLPEEREWIGKVIHK-LGWTDMWRTLYPDVPGYTWW 205
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 187 LPQYCRYLISEYKKILMKLHELGARRVIVTGTGPLGCIPAELALSGSPNGECAPEPQQAS 246
+PQ R+ +Y ++ + E GARR+ TGTG L A + S N P
Sbjct: 1 MPQDPRHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDN--TFPLLTTRR 58
Query: 247 QIYNSLLVQMIQELNNELNSDVF 269
Y ++ +++ L E +S V
Sbjct: 59 VFYRGVVEELLFFLRGETDSKVL 81
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 234 PNGECAPEPQQASQIYNSLLVQMIQELNNELNSDVFIASNAFDKN-----KDFISNPKNF 288
P+G A E QQ + M++ + NE D+ + N + K++ N KN
Sbjct: 111 PSGSSAEERQQVKYRFLDAFYPMLEAMKNE-GRDIVVCGNWNIAHQNIDLKNWKGNQKNS 169
Query: 289 GFETSNVACCGQGPYNGLGTCNIFSNLCSDRSAFVFW 325
GF G+ + LG +++ L D + +W
Sbjct: 170 GFLPEEREWIGKVIHK-LGWTDMWRTLYPDVPGYTWW 205
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 265 NSDVFIASNAFDKN--KDFISN--PKNFGFETSNVACCGQGPYNGLGTCNIFSNLCSDRS 320
NS+V++ + + K+F N P F + N++C G G + G +C + ++ D S
Sbjct: 55 NSEVYVFPTSLHISLVKEFFGNDHPGVFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCS 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,355,799
Number of Sequences: 62578
Number of extensions: 438059
Number of successful extensions: 861
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 8
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)