BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035670
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 288
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 178/285 (62%), Gaps = 12/285 (4%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXXXXXXXXXYSRGSFIFPNYQPSPHCCF 136
SLFV+ KII+KTCGTTKLL +IP I Y+RGSFIFP Q PH F
Sbjct: 2 SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 137 SEEVSTLNEHFGYLNA--KAHVIGDPKFPNRNWHVYSAS--KERSFDGVVTLEMCMTGLD 192
SEEV+ L+ +FG L A KA ++G P + WHVYSAS +S D V TLEMCMTGLD
Sbjct: 62 SEEVAVLDGYFGKLAAGSKAVIMGSPD-KTQKWHVYSASAGSVQSNDPVYTLEMCMTGLD 120
Query: 193 RKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHV 252
R+KA+VFYK+ A+ MT SGI +ILP ICDFEF+PCGYSMN I+G A ST+H+
Sbjct: 121 REKASVFYKTEES--SAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHI 178
Query: 253 TPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQWWS-MEGADV 311
TPEDGF+YAS+E+ G++ + + PLV+RVL F P EFSVA+ T+ + DV
Sbjct: 179 TPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDV 238
Query: 312 EGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPKVPKHCW 356
+GYS +E GG +VY+ ++ P +P V K CW
Sbjct: 239 KGYSLAEWSPEEFGEGGSIVYQKFTRTPYCE----SPKSVLKGCW 279
>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant.
pdb|1MSV|B Chain B, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant
Length = 354
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 21/286 (7%)
Query: 15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
FEG EK LE+ FS + LR + RS+ D L +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75 ESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSP 132
E+S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q P
Sbjct: 67 EASMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMC 187
H F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+
Sbjct: 127 HRNFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEIL 180
Query: 188 MTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGP 245
M+ LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG
Sbjct: 181 MSELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG- 237
Query: 246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
+ T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 238 TYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 280
>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
Length = 334
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 21/286 (7%)
Query: 15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
FEG EK LE+ FS + LR + RS+ D L +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75 ESSLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSP 132
ESS+FV + ILKTCGTT LL ++ + YSR +F+ P++Q P
Sbjct: 67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 133 HCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMC 187
H F EE+ LN F N + +G + + W++Y+ S V+ TLE+
Sbjct: 127 HRNFQEEIEFLNAIFP--NGAGYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEIL 180
Query: 188 MTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGP 245
M+ LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG
Sbjct: 181 MSELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG- 237
Query: 246 AFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
+ T+ +TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 238 TYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 280
>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|A Chain A, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 266
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212
>pdb|3DZ2|A Chain A, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ4|A Chain A, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|A Chain A, Human Adometdc With Covalently Bound 5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|A Chain A, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|A Chain A, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
Length = 267
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213
>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|C Chain C, Human S-Adenosylmethionine Decarboxylase
Length = 267
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213
>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound
Length = 260
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212
>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP6|A Chain A, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
Length = 260
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPNQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212
>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP8|A Chain A, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPA|A Chain A, Human Adometdc E178q Mutant Complexed With Putrescine
Length = 260
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TL++ M+
Sbjct: 61 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLQILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 172 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 212
>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP7|A Chain A, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPB|A Chain A, Human Adometdc E256q Mutant Complexed With Putrescine
Length = 260
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 61 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 114
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 115 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 171
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S++ +L ++ L+++V+ F P +F
Sbjct: 172 WTIHITPEPEFSYVSFQT---NLSQTSYDDLIRKVVEVFKPGKF 212
>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
Length = 267
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N + +G + + W++Y+ S V+ TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP--NGAGYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYSMNG+ DG +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213
>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
Length = 267
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S+FV + ILKTCGTT LL ++ + YSR +F+ P++Q PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N A+ +G + + W++Y+ S V+ TLE+ M+
Sbjct: 62 NFQEEIEFLNAIFP--NGAAYCMG--RMNSDCWYLYTLDFPES--RVISQPDQTLEILMS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI +PCGYSMNG+ DG +
Sbjct: 116 ELDPAVMDQFYMKDGVT--AKDVTRESGIRDLIPGSVIDATMANPCGYSMNGMKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213
>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|C Chain C, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 267
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 77 SLFVFPSKIILKTCGTTKLLSSIPQIXXXXXXXX--XXXXXXXYSRGSFIFPNYQPSPHC 134
S FV + ILKTCGTT LL ++ + YSR +F P++Q PH
Sbjct: 2 SXFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFXKPSHQGYPHR 61
Query: 135 CFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSASKERSFDGVV-----TLEMCMT 189
F EE+ LN F N + G + + W++Y+ S V+ TLE+ +
Sbjct: 62 NFQEEIEFLNAIFP--NGAGYCXG--RXNSDCWYLYTLDFPES--RVISQPDQTLEILXS 115
Query: 190 GLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI--DGPAF 247
LD FY A ++T+ SGI +++P VI F+PCGYS NG DG +
Sbjct: 116 ELDPAVXDQFYXKDGVT--AKDVTRESGIRDLIPGSVIDATXFNPCGYSXNGXKSDG-TY 172
Query: 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREF 291
T+H+TPE FSY S+E +L ++ L+++V+ F P +F
Sbjct: 173 WTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKF 213
>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 72
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 49/66 (74%)
Query: 10 ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFD 69
S IGFEGFEKRLEI+F +F DP+G GLR+L+++QLD L A+CTIV LSN D
Sbjct: 7 VSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVD 66
Query: 70 SYVLSE 75
SYVLSE
Sbjct: 67 SYVLSE 72
>pdb|1JEN|B Chain B, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|D Chain D, Human S-Adenosylmethionine Decarboxylase
pdb|1I72|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
pdb|3EP3|B Chain B, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP4|B Chain B, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP5|B Chain B, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP6|B Chain B, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP7|B Chain B, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP8|B Chain B, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP9|B Chain B, Human Adometdc With No Putrescine Bound
pdb|3EPA|B Chain B, Human Adometdc E178q Mutant Complexed With Putrescine
pdb|3EPB|B Chain B, Human Adometdc E256q Mutant Complexed With Putrescine
pdb|3DZ2|B Chain B, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ3|B Chain B, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
pdb|3DZ4|B Chain B, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|B Chain B, Human Adometdc With Covalently Bound
5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|B Chain B, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|B Chain B, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3H0V|B Chain B, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|B Chain B, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 67
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
FEG EK LE+ FS + LR + RS+ D L +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75 E 75
E
Sbjct: 67 E 67
>pdb|1I7M|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|D Chain D, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 67
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS 74
FEG EK LE+ FS + LR + RS+ D L +C+I+S + ++YVLS
Sbjct: 7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 75 E 75
E
Sbjct: 67 E 67
>pdb|1QRD|A Chain A, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
pdb|1QRD|B Chain B, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
Length = 273
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 2 AVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGL 38
++ +PP A EG++KRLE + +P++ PS L
Sbjct: 191 SIGHTPPDARVQVLEGWKKRLETVWEESPLYFAPSSL 227
>pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|B Chain B, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|C Chain C, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|D Chain D, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
Length = 273
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2 AVDSSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGL 38
++ +PP A EG++KRLE + P++ PS L
Sbjct: 191 SIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,752,139
Number of Sequences: 62578
Number of extensions: 440861
Number of successful extensions: 826
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 18
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)