Query 035670
Match_columns 376
No_of_seqs 134 out of 301
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02524 S-adenosylmethionine 100.0 2E-129 5E-134 960.7 37.1 347 8-363 1-354 (355)
2 TIGR00535 SAM_DCase S-adenosyl 100.0 5E-122 1E-126 902.6 34.5 317 15-338 1-333 (334)
3 PF01536 SAM_decarbox: Adenosy 100.0 3E-120 6E-125 893.8 27.7 322 11-338 1-330 (331)
4 KOG0788 S-adenosylmethionine d 100.0 1E-118 2E-123 863.7 25.2 323 10-339 2-333 (334)
5 TIGR03330 SAM_DCase_Bsu S-aden 95.7 0.04 8.6E-07 47.4 6.9 77 211-294 31-107 (112)
6 PRK04025 S-adenosylmethionine 94.6 0.1 2.3E-06 46.6 6.6 81 211-299 32-112 (139)
7 PRK01706 S-adenosylmethionine 93.5 0.25 5.3E-06 43.4 6.6 70 227-300 46-115 (123)
8 PRK02770 S-adenosylmethionine 93.2 0.28 6.1E-06 43.9 6.7 83 210-300 44-126 (139)
9 PRK03124 S-adenosylmethionine 92.9 0.34 7.3E-06 42.7 6.6 82 211-300 32-113 (127)
10 PF02675 AdoMet_dc: S-adenosyl 92.3 0.14 3E-06 43.1 3.3 76 211-294 26-101 (106)
11 PRK01236 S-adenosylmethionine 91.6 0.59 1.3E-05 41.5 6.6 83 210-300 32-114 (131)
12 PRK00458 S-adenosylmethionine 91.1 0.89 1.9E-05 40.1 7.1 78 211-295 43-121 (127)
13 COG1586 SpeD S-adenosylmethion 84.7 2.2 4.9E-05 38.2 5.6 66 227-295 54-119 (136)
14 PRK05462 S-adenosylmethionine 68.3 14 0.00031 36.5 6.4 70 227-298 68-170 (266)
15 TIGR03331 SAM_DCase_Eco S-aden 49.3 52 0.0011 32.6 6.6 70 227-298 64-166 (259)
16 PF13619 KTSC: KTSC domain 24.6 91 0.002 23.5 3.1 38 11-54 7-44 (60)
17 PRK05462 S-adenosylmethionine 23.3 3.9E+02 0.0085 26.7 7.9 110 46-161 52-208 (266)
18 PHA02762 hypothetical protein; 21.8 1.2E+02 0.0025 23.6 3.1 34 243-281 25-58 (62)
19 PF08149 BING4CT: BING4CT (NUC 21.2 1.1E+02 0.0025 25.2 3.2 72 221-293 6-78 (80)
20 COG4894 Uncharacterized conser 21.2 44 0.00094 30.8 0.9 70 75-144 35-114 (159)
21 KOG3349 Predicted glycosyltran 20.3 1.9E+02 0.004 27.1 4.7 45 84-128 4-53 (170)
No 1
>PLN02524 S-adenosylmethionine decarboxylase
Probab=100.00 E-value=2.2e-129 Score=960.68 Aligned_cols=347 Identities=62% Similarity=0.970 Sum_probs=322.9
Q ss_pred CCCCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEE
Q 035670 8 PVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIIL 87 (376)
Q Consensus 8 ~~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL 87 (376)
++.++.+|||+||||||||++++.+.++.++|||+|||++|++||++|+|+|||+++|+++||||||||||||||+||||
T Consensus 1 ~~~~~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL 80 (355)
T PLN02524 1 MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIII 80 (355)
T ss_pred CCCCCCCccccceEEEEEEecCcccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEE
Confidence 46788899999999999999887666788899999999999999999999999999999999999999999999999999
Q ss_pred eccCccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCC--CCceEEecCCCCCCC
Q 035670 88 KTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYL--NAKAHVIGDPKFPNR 165 (376)
Q Consensus 88 KTCGTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~--~g~aY~~G~~~~~~~ 165 (376)
|||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|+++ +|+||+||+++. +|
T Consensus 81 KTCGTT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~-~~ 159 (355)
T PLN02524 81 KTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDK-GQ 159 (355)
T ss_pred EeCCcccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCC-CC
Confidence 999999999999999999999999999999999999999999999999999999999999864 689999999865 39
Q ss_pred cEEEEecCCCC---CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCC
Q 035670 166 NWHVYSASKER---SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGI 242 (376)
Q Consensus 166 hW~ly~~~~~~---~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i 242 (376)
|||||++++.. ..++|+|||||||+||+++|++||++++| ++|.+||+.+||++|+|++.||||+|+|||||||||
T Consensus 160 hW~lY~a~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~-~s~~~~t~~sgI~~i~P~~~iddf~F~PCGYSmN~i 238 (355)
T PLN02524 160 KWHVYSASAHNSSNSNEPVYTLEMCMTGLDREKASVFFKDSSL-SSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGI 238 (355)
T ss_pred ceEEEeCCCcccccCCCCCeEEEEEccCCCHHHHhhhhhCccc-ccHHHHHHhhChhhhCCCCeecccccCCCccccccc
Confidence 99999998654 36899999999999999999999999987 899999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCCCCCccccccee
Q 035670 243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGADVEGYSSETAVK 321 (376)
Q Consensus 243 ~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~~~gy~~~~~~~ 321 (376)
.|++|+|||||||++|||||||||++|....++.+||+|||++|+|++|+|+++++.... ..+....+++||+|.+++.
T Consensus 239 ~g~~y~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~~~~ 318 (355)
T PLN02524 239 EGDAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKGRSC 318 (355)
T ss_pred CCCceEEEEECCCCCCeEEEEEeccCCccccCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecCcEE
Confidence 999999999999999999999999989888899999999999999999999999976543 3333445789999999999
Q ss_pred eeCCCCcEEEEEEEEECCCCcCCCCCCCC-CCccccchhhhhc
Q 035670 322 QELAGGGCVVYKTYSVDPNARCAVSAPPK-VPKHCWKEVAAEE 363 (376)
Q Consensus 322 ~~~~~gy~l~y~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 363 (376)
++|++||+|+|.+|++... |+ +|| +|+ |++++.++
T Consensus 319 ~~l~~~~~l~y~~f~~~~~--~~---~~~~~~~--~~~~~~~~ 354 (355)
T PLN02524 319 QELPGGGSVVYQTFTATGG--CG---SPRSTLK--WSENESCE 354 (355)
T ss_pred EecCCCcEEEEEEEEecCC--CC---Cchhhhc--cchhcccc
Confidence 9999989999999999884 66 889 999 99887765
No 2
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=100.00 E-value=4.7e-122 Score=902.63 Aligned_cols=317 Identities=50% Similarity=0.800 Sum_probs=290.6
Q ss_pred CCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEeccCccc
Q 035670 15 FEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTCGTTK 94 (376)
Q Consensus 15 FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt 94 (376)
|||+||||||||.+++... +.++|||+|||++|++||++|+|+|||+++|+++||||||||||||||||||||||||||
T Consensus 1 FEG~EKrLEI~F~~~~~~~-~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt 79 (334)
T TIGR00535 1 FEGPEKLLEIWFFEHKKFI-DEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGTTK 79 (334)
T ss_pred CCCcceEEEEEEecCCcCC-CCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCCch
Confidence 9999999999999765433 677999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHhhcC--ceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCcEEEEec
Q 035670 95 LLSSIPQILKLSDSLS--LAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVYSA 172 (376)
Q Consensus 95 LL~~l~~ll~la~~~~--~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~hW~ly~~ 172 (376)
||+|||+||++|++++ ..|++|+||||||+||++|++||++|+|||++|+++|++ |+||+||+++++ +|||+|++
T Consensus 80 LL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~~--g~AY~~G~~~~~-~~WhlY~~ 156 (334)
T TIGR00535 80 LLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFGN--GKAYVVGDPAKP-QKWHLYVA 156 (334)
T ss_pred HHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcCC--CceEEeCCCCCC-CceEEEeC
Confidence 9999999999999885 489999999999999999999999999999999999977 799999999986 89999998
Q ss_pred CCCC----CCCCcceEEEEecCCCHHhhcccccCCCCCCC----HHHHHHHhCCccccCC-CcccccccCCCcccccCCC
Q 035670 173 SKER----SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGG----ASEMTKMSGISEILPS-HVICDFEFDPCGYSMNGID 243 (376)
Q Consensus 173 ~~~~----~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~----~~~~t~~sgi~~l~p~-~~id~f~F~PCGYSmN~i~ 243 (376)
+... ..++|+|+|||||+||+++|++||++++ ++ |.+||+.+||++|+|+ +.||||+|+|||||||||.
T Consensus 157 ~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~~~h~~~~~~t~~sgI~~i~P~~~~iddf~F~PCGYSmNgi~ 234 (334)
T TIGR00535 157 ETERETPKIEDPDETLEMLMTGLDKEKASKFFKGPA--ASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAIL 234 (334)
T ss_pred CCCccccCCCCCceEeeeecccCCHHHHHhheeCcC--CCccchHHHHHHHhChHhhcCCcceeecccccCCcCcccccc
Confidence 7432 3568999999999999999999999886 56 9999999999999999 9999999999999999999
Q ss_pred C-CceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc--cccccc--CCCCCccccc
Q 035670 244 G-PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ--WWSMEG--ADVEGYSSET 318 (376)
Q Consensus 244 g-~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~--~~~~~~--~~~~gy~~~~ 318 (376)
| ++|+|||||||++|||||||||+++....++.+||+|||++|+|++|+||++++.... ..+... ..+.||++.+
T Consensus 235 ~~~~Y~TIHITPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~~~~y~~~~ 314 (334)
T TIGR00535 235 GEKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQSFQKLLSINESLPDYIKLD 314 (334)
T ss_pred CCCcEEEEEEcCCCCceEEEEeeccCCcccccHHHHHHHHHHhcCCceEEEEEEecCcccchhhhhhhhccccCCcccee
Confidence 9 7999999999999999999999888878899999999999999999999999876522 111111 2468999999
Q ss_pred ceeeeCCCCcEEEEEEEEEC
Q 035670 319 AVKQELAGGGCVVYKTYSVD 338 (376)
Q Consensus 319 ~~~~~~~~gy~l~y~~f~~~ 338 (376)
++.+++++ |+|+|++|++.
T Consensus 315 ~~~~~~~~-~~l~y~~f~~~ 333 (334)
T TIGR00535 315 KQELDLGD-YHLFYQKFQKK 333 (334)
T ss_pred EEEecCCC-eeEEEEEEEec
Confidence 99999994 99999999875
No 3
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=100.00 E-value=3e-120 Score=893.81 Aligned_cols=322 Identities=46% Similarity=0.754 Sum_probs=260.2
Q ss_pred CCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEecc
Q 035670 11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKTC 90 (376)
Q Consensus 11 s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTC 90 (376)
++++|||+||||||||.++.....+++.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||||
T Consensus 1 s~~~FEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTC 80 (331)
T PF01536_consen 1 STDFFEGPEKRLEIWFSPPSVFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTC 80 (331)
T ss_dssp -------SEEEEEEEEE----------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEE
T ss_pred CCCCccccceEEEEEEecCCcCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEc
Confidence 46899999999999999865555667899999999999999999999999999999999999999999999999999999
Q ss_pred CccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCcEEEE
Q 035670 91 GTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRNWHVY 170 (376)
Q Consensus 91 GTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~hW~ly 170 (376)
||||||+|||+||++|++++..|+||+||||||+||++|++||++|++||++|+++|++ |+||++|++|+| +|||||
T Consensus 81 GtT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~~--G~aY~~G~~~~d-~~wyly 157 (331)
T PF01536_consen 81 GTTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFPS--GKAYVMGPLDSD-HHWYLY 157 (331)
T ss_dssp TTS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHTS--EEEEEECSTTSS--EEEEE
T ss_pred cchhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCCC--CcEEEeCCCCCC-ceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999986 899999999985 699999
Q ss_pred ecCCCC--CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCccc-ccccCCCcccccCCCCCce
Q 035670 171 SASKER--SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVIC-DFEFDPCGYSMNGIDGPAF 247 (376)
Q Consensus 171 ~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id-~f~F~PCGYSmN~i~g~~Y 247 (376)
+++.+. .+++|+|||||||+|||++|++||++++ ++|++||+.+||++|+|++.|| ||+|+|||||||||.|+.|
T Consensus 158 ~~~~~~~~~~~~D~TLEILMt~Ld~~~~~~F~~~~~--~~~~~~t~~sgi~~l~p~~~i~~~f~F~PCGYS~N~~~~~~Y 235 (331)
T PF01536_consen 158 TADTPESSSSEPDQTLEILMTDLDPEVASQFYRSES--QSGEEITKASGIDDLFPGFEIDDDFLFEPCGYSMNGIDGDRY 235 (331)
T ss_dssp EEESSS-S-SS--EEEEEEEECE-HHHHHCCC-BTT--B-HHHHHHHTTGGGCSTTSEEE-EEE-SSC-EEEEEECTTEE
T ss_pred ecCccccccCCCccchhhhhccCCHHHHHHHhcCCC--ccHHHHHHhhhhhcccCCcccccccccCCccccccCCCCCeE
Confidence 998554 5789999999999999999999999988 9999999999999999999999 9999999999999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc---ccccccC--CCCCcccccceee
Q 035670 248 STVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ---WWSMEGA--DVEGYSSETAVKQ 322 (376)
Q Consensus 248 ~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~---~~~~~~~--~~~gy~~~~~~~~ 322 (376)
+|||||||++|||||||||+++....++.++|+|||++|+|++|+||++...... ....... ...+|++.|++.+
T Consensus 236 ~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~~t~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 315 (331)
T PF01536_consen 236 YTIHVTPEEGFSYASFETNVYDFSQESYDDLIRKVLNIFKPGKFSVTLFASSNAEKDSESKLFDLDPKGYGYKRTDRQEY 315 (331)
T ss_dssp EEEEEE--TTS-EEEEEEES--TTTS-CHHHHHHHHHHH-ECEEEEEEEECTSSHHHCCCSHC-BTTTTEEEEEEEEEEE
T ss_pred EEEEECCCCCceEEEEEeccCCcCcCCHHHHHHHHHheeCCcEEEEEEEecCCCcchhhhhccccccccccccceeEEEc
Confidence 9999999999999999998777888899999999999999999999988643222 1111122 2456999999999
Q ss_pred eCCCCcEEEEEEEEEC
Q 035670 323 ELAGGGCVVYKTYSVD 338 (376)
Q Consensus 323 ~~~~gy~l~y~~f~~~ 338 (376)
+|+ ||+|+|.+|+|.
T Consensus 316 ~~~-~y~lvy~~f~k~ 330 (331)
T PF01536_consen 316 DFD-GYDLVYASFEKK 330 (331)
T ss_dssp CEC-CEEEEEEEEEE-
T ss_pred cCC-CceEEEEEEEEc
Confidence 998 699999999985
No 4
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-118 Score=863.70 Aligned_cols=323 Identities=50% Similarity=0.796 Sum_probs=300.5
Q ss_pred CCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEec
Q 035670 10 ASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILKT 89 (376)
Q Consensus 10 ~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKT 89 (376)
.++.+|||+||||||||.++..+.+++++|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+||||||
T Consensus 2 ~~a~~FEG~EKlLEvwF~~~~~~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlKT 81 (334)
T KOG0788|consen 2 VSATGFEGPEKLLEVWFFEPKKFSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILKT 81 (334)
T ss_pred CcccccccchheEEEEEccCccccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEEe
Confidence 45679999999999999988777778889999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhccHHHHHHHHhhcC-ceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEec-CCCCCCCcE
Q 035670 90 CGTTKLLSSIPQILKLSDSLS-LAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIG-DPKFPNRNW 167 (376)
Q Consensus 90 CGTTtLL~~l~~ll~la~~~~-~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G-~~~~~~~hW 167 (376)
||||+||+|||+||+||++++ ..|.+|+||||||+||..|++||++|.|||++|+++|++ |+||+|| ++++ +||
T Consensus 82 CGTT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~~--g~ay~mG~~~~s--~~W 157 (334)
T KOG0788|consen 82 CGTTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFPN--GKAYCMGLNMNS--KCW 157 (334)
T ss_pred ccchhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcCC--CceEEecCCCCC--Cce
Confidence 999999999999999999999 699999999999999999999999999999999999997 8999999 6665 899
Q ss_pred EEEecCCCC----CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCCC
Q 035670 168 HVYSASKER----SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGID 243 (376)
Q Consensus 168 ~ly~~~~~~----~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~ 243 (376)
|||+++... ..+||+|||||||+|||++|.+||+.++ .+|.+||+.|||++|+|++.||||+|+|||||||||.
T Consensus 158 ~lys~~~~~e~~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~--~~a~~mT~~SGI~~I~p~s~iddf~F~PCGYSmN~~~ 235 (334)
T KOG0788|consen 158 HLYSASADDESNVIDEPDYTLEVCMTELDPEKASVFYKNNA--VSAKEMTDESGIDDILPGSVIDDFAFEPCGYSMNGID 235 (334)
T ss_pred EEEeccccccccccCCCceeHHHHHhhhChhhhheeecccc--cccccchhhcchhhcCCcceeeccccccccccccCcC
Confidence 999987442 5799999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-cccccc--CCCCCcccccce
Q 035670 244 GPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEG--ADVEGYSSETAV 320 (376)
Q Consensus 244 g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~--~~~~gy~~~~~~ 320 (376)
|++|+|||||||++|||||||||++|....++.++|+|||+||+|++|+||++.+..++ ...... .+..+|++.+.+
T Consensus 236 ~d~y~TIHVTPE~~fSYaSFEt~~~~~~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~~~~~~~kr~~~~ 315 (334)
T KOG0788|consen 236 GDAYSTIHVTPEDGFSYASFETVGYDQGLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKDVERYGYKRRDMQ 315 (334)
T ss_pred CceEEEEEeccccCceEEEEEeeccccccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhhhhhhhheeceee
Confidence 99999999999999999999999999999999999999999999999999998877654 322222 233458999999
Q ss_pred eeeCCCCcEEEEEEEEECC
Q 035670 321 KQELAGGGCVVYKTYSVDP 339 (376)
Q Consensus 321 ~~~~~~gy~l~y~~f~~~~ 339 (376)
...|++ |+|+|++|++..
T Consensus 316 ~~~~~~-~~l~y~~f~k~~ 333 (334)
T KOG0788|consen 316 SLGFES-YTLVYQSFTKKG 333 (334)
T ss_pred EecCCC-ceEEEEEeeecc
Confidence 999995 999999999865
No 5
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=95.66 E-value=0.04 Score=47.35 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670 211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE 290 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 290 (376)
+..+..|..-+ .+.-+.|+|.|+|.=.|..+...+||.=||.+ ||.+..--++ ...++...++-+.+.|+|.+
T Consensus 31 ~a~~~~g~ti~----~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g--yaavDiftCg-~~~~p~~a~~~l~~~f~~~~ 103 (112)
T TIGR03330 31 EAAKVAGATLV----ASHFHKFSPGGVSGVVLLAESHISIHTWPEYG--YAAVDVFTCG-DHSDPEKAFEYLVEALKPKR 103 (112)
T ss_pred HHHHHcCCEEE----EEEEEEcCCCcEEEEEEecccEEEEEeccCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence 34455554422 24678999999999999999999999999987 5555542122 22478999999999999999
Q ss_pred EEEE
Q 035670 291 FSVA 294 (376)
Q Consensus 291 f~v~ 294 (376)
..+.
T Consensus 104 ~~~~ 107 (112)
T TIGR03330 104 VEVR 107 (112)
T ss_pred EEEE
Confidence 9886
No 6
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=94.60 E-value=0.1 Score=46.65 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=60.9
Q ss_pred HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670 211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE 290 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 290 (376)
+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...++...++.+.+.|+|.+
T Consensus 32 ~Aa~~~gatil----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg-~~~~p~~a~~~L~~~f~~~~ 104 (139)
T PRK04025 32 EAAKRGNMEVK----ASYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCG-EKADPEKAVDYILEQFKAKY 104 (139)
T ss_pred HHHHHcCCeEE----EEEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence 34555554433 35779999999999999999999999999976 5555542122 22478899999999999999
Q ss_pred EEEEEEeCC
Q 035670 291 FSVAVTCGS 299 (376)
Q Consensus 291 f~v~~~~~~ 299 (376)
..++. +.+
T Consensus 105 ~~~~~-l~R 112 (139)
T PRK04025 105 AHVSE-IKR 112 (139)
T ss_pred EEEEE-EeC
Confidence 99974 444
No 7
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=93.45 E-value=0.25 Score=43.35 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=56.1
Q ss_pred ccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCC
Q 035670 227 ICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSG 300 (376)
Q Consensus 227 id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~ 300 (376)
+..+.|+|=|.|.=+|..+...+||.=||.+ ||.+..=-++ ...++...++.+.+.|+|.+..+. .+.++
T Consensus 46 ~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~~~~~~-~~~RG 115 (123)
T PRK01706 46 VSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCG-TTVEPQIAIDYIVSILKPNEMHIK-RLIRG 115 (123)
T ss_pred EEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCeEEEE-EEecC
Confidence 4679999999999999999999999999976 6776652222 224789999999999999999987 44443
No 8
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=93.24 E-value=0.28 Score=43.90 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=61.6
Q ss_pred HHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670 210 SEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR 289 (376)
Q Consensus 210 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 289 (376)
.+..+..|..-+ .+..+.|+|=|+|.-+|..+...+||.=||.+ ||.+..=-++ ...++...++.+.+.|+|.
T Consensus 44 ~~Aa~~~gativ----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~ 116 (139)
T PRK02770 44 TEAAKRAGATLL----NLITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCG-DHTMPEKACQYLIEELMAK 116 (139)
T ss_pred HHHHHHcCCEEE----EEEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 334555564432 34679999999999999999999999999976 5665542122 2247889999999999999
Q ss_pred eEEEEEEeCCC
Q 035670 290 EFSVAVTCGSG 300 (376)
Q Consensus 290 ~f~v~~~~~~~ 300 (376)
+..+. .+.++
T Consensus 117 ~~~~~-~~~Rg 126 (139)
T PRK02770 117 RHSLR-SIERE 126 (139)
T ss_pred eEEEE-EEecC
Confidence 99987 44443
No 9
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=92.89 E-value=0.34 Score=42.73 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=61.1
Q ss_pred HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670 211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE 290 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 290 (376)
+..+.+|..-+ .+..+.|+|=|.|.=+|..+...+||.=||.+ ||.+..=-++ ...++...++.+.+.|+|++
T Consensus 32 ~a~~~~g~til----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~~ 104 (127)
T PRK03124 32 DAALEAGAEVR----EVAFHKFSPQGVSGVVVISESHLTIHTWPELG--YAAVDVFTCG-DRVDPWDACNYIAEGLGAKT 104 (127)
T ss_pred HHHHHcCCeEE----EEEeEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence 34455554322 35779999999999999999999999999975 6766652222 22478899999999999999
Q ss_pred EEEEEEeCCC
Q 035670 291 FSVAVTCGSG 300 (376)
Q Consensus 291 f~v~~~~~~~ 300 (376)
..+. .+.++
T Consensus 105 ~~~~-~~~RG 113 (127)
T PRK03124 105 REAI-ELKRG 113 (127)
T ss_pred EEEE-EEecC
Confidence 9987 44443
No 10
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=92.26 E-value=0.14 Score=43.13 Aligned_cols=76 Identities=18% Similarity=0.363 Sum_probs=55.3
Q ss_pred HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670 211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE 290 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 290 (376)
+..+..|+..+ .+.-+.|+|=|+|.=++.++...+||.=||.++-++-.=|.+- .++..+++.+.+.|+|.+
T Consensus 26 ~a~~~~g~~~~----~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC~~----~~p~~a~~~l~~~f~~~~ 97 (106)
T PF02675_consen 26 DAAKAAGLTVL----SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTCGE----FDPEKAIEYLKKAFKPDK 97 (106)
T ss_dssp HHHHHCT-EEE----EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEEST----HHHHHHHHHHHHHHT-SE
T ss_pred HHHHHcCCEEE----EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEcCC----CCHHHHHHHHHHHhCCCE
Confidence 34555565443 2467899999999999999999999999999944443333322 478899999999999999
Q ss_pred EEEE
Q 035670 291 FSVA 294 (376)
Q Consensus 291 f~v~ 294 (376)
..++
T Consensus 98 ~~~~ 101 (106)
T PF02675_consen 98 VKIT 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 11
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=91.60 E-value=0.59 Score=41.46 Aligned_cols=83 Identities=13% Similarity=0.254 Sum_probs=61.2
Q ss_pred HHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670 210 SEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR 289 (376)
Q Consensus 210 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 289 (376)
.+..+.+|..-+ .+..+-|+|=|+|.=+|..+...+||.=||.+ ||.+..=-++ ...++...++-+.+.|+|.
T Consensus 32 ~~aa~~~g~tiv----~~~~h~F~p~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~f~~~ 104 (131)
T PRK01236 32 EGAVKYAELTKI----SSHYYQFNPHGATGVVLLAESHISIHTWPEYG--LVTLDVYTCG-DPSKADKAFEYIIKKLKPK 104 (131)
T ss_pred HHHHHHCCCEEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 334555564422 34678999999999999999999999999975 5666652222 2246889999999999999
Q ss_pred eEEEEEEeCCC
Q 035670 290 EFSVAVTCGSG 300 (376)
Q Consensus 290 ~f~v~~~~~~~ 300 (376)
+..++ .+.++
T Consensus 105 ~~~~~-~l~RG 114 (131)
T PRK01236 105 RVDHK-VLERG 114 (131)
T ss_pred eEEEE-EEecC
Confidence 99987 44443
No 12
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=91.08 E-value=0.89 Score=40.09 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=58.2
Q ss_pred HHHHHhCCccccCCCcccccccCC-CcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCC
Q 035670 211 EMTKMSGISEILPSHVICDFEFDP-CGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPR 289 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~P-CGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~ 289 (376)
+..+..|..-+ .+.-+.|.| =|+|.=+|..+...+||.=||.++ |.+..=-++ ...++...++.+.+.|+|.
T Consensus 43 ~aa~~~g~til----~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gy--aavDiftCg-~~~~p~~a~~~L~~~f~~~ 115 (127)
T PRK00458 43 EAAKIANMTLL----DIKSWKFGKKGGVSVIALVLESHIAIHTWPEYNF--ATVDVYTCG-EHTDPQKAFEYIVSKLKPK 115 (127)
T ss_pred HHHHHcCCEEE----EEEEEECCCCCCEEEEEEecccEEEEEeCcCCCc--EEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence 34455554432 346788998 899999999999999999999765 555542122 2236889999999999999
Q ss_pred eEEEEE
Q 035670 290 EFSVAV 295 (376)
Q Consensus 290 ~f~v~~ 295 (376)
+..++.
T Consensus 116 ~~~~~~ 121 (127)
T PRK00458 116 RYTVNY 121 (127)
T ss_pred EEEEEE
Confidence 999873
No 13
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=84.74 E-value=2.2 Score=38.25 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=55.2
Q ss_pred ccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEE
Q 035670 227 ICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAV 295 (376)
Q Consensus 227 id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~ 295 (376)
+.-+.|.|=|=|-=.|..+..-|||.=||-+ ||..+.--+. ...++..-++-+++-|+|.++++..
T Consensus 54 ~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVyTCG-~~~~p~~A~~yi~~~L~p~~v~v~~ 119 (136)
T COG1586 54 IAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVYTCG-DHIDPLKAFNYLVEQLKPKRVTVDY 119 (136)
T ss_pred EEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEEccC-CCCCHHHHHHHHHHHhCCcEEEEEE
Confidence 6788999999999999999999999999999 8888862111 2247788899999999999999863
No 14
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=68.29 E-value=14 Score=36.49 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=54.0
Q ss_pred ccccccCCCcccccCCCCC---------------------------ceEEEEecCCC----CCe--EEEEEecCCCCCcC
Q 035670 227 ICDFEFDPCGYSMNGIDGP---------------------------AFSTVHVTPED----GFS--YASYEAAGFDLRLV 273 (376)
Q Consensus 227 id~f~F~PCGYSmN~i~g~---------------------------~Y~TIHVTPE~----~~S--YaSFETn~~~~~~~ 273 (376)
|.-+.|+|=|=|...|..+ ...|||.=||. |++ ||....--+ ...
T Consensus 68 i~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~GiatFrAdIDVfTC--G~i 145 (266)
T PRK05462 68 IARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGICTFRADIDVSTC--GVI 145 (266)
T ss_pred eeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCccceeeEEEEEcC--CCC
Confidence 4567889999998887666 88999999998 454 577665322 235
Q ss_pred CHHHHHHHHhhccCCCeEEEEEEeC
Q 035670 274 RFEPLVKRVLNSFAPREFSVAVTCG 298 (376)
Q Consensus 274 ~~~~li~~VL~~F~P~~f~v~~~~~ 298 (376)
++...++-+.+.|+|...++...+.
T Consensus 146 sPlkAl~yLi~sF~sd~vtidy~vR 170 (266)
T PRK05462 146 SPLKALNYLIHSFESDIVTIDYRVR 170 (266)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEec
Confidence 7888999999999999999875443
No 15
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=49.31 E-value=52 Score=32.55 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=52.7
Q ss_pred ccccccCCCcccccCCCCC---------------------------ceEEEEecCCCC--CeE----EEEEecCCCCCcC
Q 035670 227 ICDFEFDPCGYSMNGIDGP---------------------------AFSTVHVTPEDG--FSY----ASYEAAGFDLRLV 273 (376)
Q Consensus 227 id~f~F~PCGYSmN~i~g~---------------------------~Y~TIHVTPE~~--~SY----aSFETn~~~~~~~ 273 (376)
+.-+.|+|=|=|...|..+ ...|||.=||.+ -.| |..+.--+ ...
T Consensus 64 i~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~tFrAdIDVfTC--G~i 141 (259)
T TIGR03331 64 IARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGISTFRADIDVSTC--GVI 141 (259)
T ss_pred eeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCccceeEEEEEecC--CCC
Confidence 4567889999998888665 789999999984 123 66565222 235
Q ss_pred CHHHHHHHHhhccCCCeEEEEEEeC
Q 035670 274 RFEPLVKRVLNSFAPREFSVAVTCG 298 (376)
Q Consensus 274 ~~~~li~~VL~~F~P~~f~v~~~~~ 298 (376)
++...++-+...|+|...++...+.
T Consensus 142 sPlkAl~yLi~sf~sd~vtidy~vR 166 (259)
T TIGR03331 142 SPLKALNYLIHSFESDIVTIDYRVR 166 (259)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEec
Confidence 7888999999999999999875544
No 16
>PF13619 KTSC: KTSC domain
Probab=24.59 E-value=91 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhc
Q 035670 11 SPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDL 54 (376)
Q Consensus 11 s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~ 54 (376)
...++.-..+.|||.|... ..---..+|.+.|+.+|.+
T Consensus 7 ~~v~Yd~~~~~L~V~F~~G------~~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 7 RSVGYDPETRTLEVEFKSG------SVYRYFGVPPEVYEALLNA 44 (60)
T ss_pred cEEeECCCCCEEEEEEcCC------CEEEECCCCHHHHHHHHcC
Confidence 3456788889999999632 1223458999999999874
No 17
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=23.34 E-value=3.9e+02 Score=26.73 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHhhccCCeEEeeecCCc----ee-eeeccC---------------------------ceeee--eCCe-------
Q 035670 46 SQLDSFLDLAKCTIVSQLSNTE----FD-SYVLSE---------------------------SSLFV--FPSK------- 84 (376)
Q Consensus 46 ~~w~~~L~~a~C~IlS~~sn~~----~D-AYvLSE---------------------------SSLFV--~~~k------- 84 (376)
+-+.++.+.++++||+...-+. +- .-|+|| |=+=| ||..
T Consensus 52 ~IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~Gia 131 (266)
T PRK05462 52 EILTEVCSIIGANILNIARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGIC 131 (266)
T ss_pred HHHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCcc
Confidence 4466677888999999765432 11 345666 75544 7765
Q ss_pred -----EEEeccCccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCC-hhHHHHHHHHHhCCCCCceEEec
Q 035670 85 -----IILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCC-FSEEVSTLNEHFGYLNAKAHVIG 158 (376)
Q Consensus 85 -----iILKTCGTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~~~g~aY~~G 158 (376)
|=+-|||....++|+..| ++.+.-.+..+.|-+|-|...-.-. +- ..+++.-++.|.+.---..|-|=
T Consensus 132 tFrAdIDVfTCG~isPlkAl~yL---i~sF~sd~vtidy~vRGftrdv~G~---k~fidh~i~sIq~~i~~~~~~~y~~~ 205 (266)
T PRK05462 132 TFRADIDVSTCGVISPLKALNYL---IHSFESDIVTIDYRVRGFTRDINGK---KHFIDHEINSIQNFISEDTKSLYDMI 205 (266)
T ss_pred ceeeEEEEEcCCCCCHHHHHHHH---HHHhCCCeEEEEEEecCCccCCCCe---EeeccCccHHHHhhcCHHHHhhcceE
Confidence 468999999999999994 4455556777777777765433222 23 56677777777543112455554
Q ss_pred CCC
Q 035670 159 DPK 161 (376)
Q Consensus 159 ~~~ 161 (376)
++|
T Consensus 206 Dvn 208 (266)
T PRK05462 206 DVN 208 (266)
T ss_pred Eec
Confidence 444
No 18
>PHA02762 hypothetical protein; Provisional
Probab=21.84 E-value=1.2e+02 Score=23.62 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=27.0
Q ss_pred CCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHH
Q 035670 243 DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKR 281 (376)
Q Consensus 243 ~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~ 281 (376)
.|.+|-||-|--+..-+|.|.|- .+.++.+-|.|
T Consensus 25 eg~afvtigide~g~iayisiep-----~dkdl~~~i~r 58 (62)
T PHA02762 25 EGEAFVTIGIDENDKISYISIEP-----LDKDLKEGIKR 58 (62)
T ss_pred cccEEEEEeECCCCcEEEEEecc-----cchHHHHhhhh
Confidence 56789999999999999999998 23356666655
No 19
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=21.21 E-value=1.1e+02 Score=25.24 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=44.5
Q ss_pred ccCCCcccccccCCCcccccCC-CCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEE
Q 035670 221 ILPSHVICDFEFDPCGYSMNGI-DGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSV 293 (376)
Q Consensus 221 l~p~~~id~f~F~PCGYSmN~i-~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v 293 (376)
..|+..|.+..|-|.===. || ....|.+|=|-=--+--|=|+|.|.+.....--..=|+++|+...|..-++
T Consensus 6 ~~~~~~v~~~~F~PfEDvL-gvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~L 78 (80)
T PF08149_consen 6 LKPGSPVESLRFCPFEDVL-GVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITL 78 (80)
T ss_pred cCCCCeeeeeEEechHHee-EeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceec
Confidence 4567777777777742000 11 124677775532223458899998776544445566999999999986443
No 20
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=21.15 E-value=44 Score=30.76 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=60.3
Q ss_pred CceeeeeCCeEEEeccCccchhccHHHHHHHHhhcCc---------eeEEEEEcccccCCCCCCCCCCCC-hhHHHHHHH
Q 035670 75 ESSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSL---------AVSSVKYSRGSFIFPNYQPSPHCC-FSEEVSTLN 144 (376)
Q Consensus 75 ESSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~~~---------~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~ 144 (376)
|-|-|+-+++++|+-...++|.+-=.+|+.+...+.+ ...++.|+|--|-+|..---.|.+ |..|.+.++
T Consensus 35 eGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~~~~vrKK~tf~Rdk~e~d~~~~eihGNi~d~efkl~d 114 (159)
T COG4894 35 EGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHGNIWDDEFKLTD 114 (159)
T ss_pred eeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCCCEEEEEEEEEEEeeeEEEcCCCeEEecceeceEEEEec
Confidence 4789999999999999999999999999998876643 347889999999999999999999 888877654
No 21
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.33 E-value=1.9e+02 Score=27.07 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=31.8
Q ss_pred eEEEeccCccc---hhccH--HHHHHHHhhcCceeEEEEEcccccCCCCC
Q 035670 84 KIILKTCGTTK---LLSSI--PQILKLSDSLSLAVSSVKYSRGSFIFPNY 128 (376)
Q Consensus 84 kiILKTCGTTt---LL~~l--~~ll~la~~~~~~v~~v~YsRknf~fP~~ 128 (376)
+-+.-|||||. |+.|+ +..++-..++|..=-.+-|-|+++.+|+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~ 53 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDP 53 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCH
Confidence 45567999997 45554 45666667778655567788988777764
Done!