Query 035670
Match_columns 376
No_of_seqs 134 out of 301
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl0_A Adometdc, S-adenosylmet 100.0 3E-123 9E-128 912.6 35.1 320 10-340 2-330 (334)
2 1mhm_A Adometdc, samdc, S-aden 100.0 5E-106 2E-110 777.1 23.4 282 76-365 1-288 (288)
3 1mhm_B Adometdc, samdc, S-aden 100.0 1.2E-29 4.1E-34 199.6 6.4 71 5-75 2-72 (72)
4 1vr7_A Adometdc, samdc, S-aden 94.0 0.063 2.1E-06 46.9 5.1 102 184-296 20-122 (142)
5 2iii_A S-adenosylmethionine de 93.0 0.062 2.1E-06 46.5 3.5 79 211-296 33-111 (135)
6 3vk8_A Probable formamidopyrim 20.9 12 0.0004 35.9 -1.7 76 39-135 190-292 (295)
7 2iii_A S-adenosylmethionine de 17.7 4.5E+02 0.015 22.1 7.7 80 45-127 28-120 (135)
8 2k6g_A Replication factor C su 13.2 1.4E+02 0.0049 24.1 3.3 36 39-75 43-78 (109)
9 3d2l_A SAM-dependent methyltra 12.4 1.5E+02 0.0052 25.1 3.5 32 40-71 198-229 (243)
10 2dhy_A CUE domain-containing p 12.3 1.5E+02 0.0051 22.4 2.9 24 126-150 9-32 (67)
No 1
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=100.00 E-value=2.7e-123 Score=912.61 Aligned_cols=320 Identities=32% Similarity=0.524 Sum_probs=287.4
Q ss_pred CCCCCCCccceEEEEEecCCCCCCCC-CcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccCceeeeeCCeEEEe
Q 035670 10 ASPIGFEGFEKRLEITFSPAPIFTDP-SGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSESSLFVFPSKIILK 88 (376)
Q Consensus 10 ~s~~~FEG~EKrLEI~F~~~~~~~~~-~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 88 (376)
+++++|||+||||||||.++.. ..+ +..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus 2 ds~~~FEG~EKrLEI~F~~~~~-~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK 80 (334)
T 1jl0_A 2 EAAHFFEGTEKLLEVWFSRQQP-DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK 80 (334)
T ss_dssp ---CCCCCCCEEEEEEEECCC------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred CcCCCCcccceEEEEEEecCCc-cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence 6899999999999999997531 222 34569999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhccHHHHHHHHhhc-Cc-eeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCCCCceEEecCCCCCCCc
Q 035670 89 TCGTTKLLSSIPQILKLSDSL-SL-AVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYLNAKAHVIGDPKFPNRN 166 (376)
Q Consensus 89 TCGTTtLL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~g~aY~~G~~~~~~~h 166 (376)
||||||||+|||+||++|+++ |+ .|++|+||||||+||++|++||++|+|||++|+++|++ |+||+||++|+ ||
T Consensus 81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~--G~aY~~G~~~~--~h 156 (334)
T 1jl0_A 81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN--GAGYCMGRMNS--DC 156 (334)
T ss_dssp ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS--EEEEEESCTTS--SC
T ss_pred eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcCC--CcEEEeCCCCC--Ce
Confidence 999999999999999999765 87 89999999999999999999999999999999999987 89999999996 89
Q ss_pred EEEEecCCCC---CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccccCCCcccccCCC
Q 035670 167 WHVYSASKER---SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGID 243 (376)
Q Consensus 167 W~ly~~~~~~---~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~ 243 (376)
||||+++.+. ..++|+|||||||+||+++|++||++++ ++|.+||+.+||++|+|+++||||+|+|||||||||.
T Consensus 157 w~ly~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~~a~~~t~~sgi~~i~P~~~iddf~F~PCGYSmNgi~ 234 (334)
T 1jl0_A 157 WYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDG--VTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMK 234 (334)
T ss_dssp EEEEEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTT--BCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEEC
T ss_pred eEEEecCCcccccCCCCcceEEEEccCCCHHHHhhhhcCcC--CcHHHHHHHhChhhcCCCcEeeccccCCccceecccc
Confidence 9999998653 4678999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred C-CceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCC-CCCcccccce
Q 035670 244 G-PAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGAD-VEGYSSETAV 320 (376)
Q Consensus 244 g-~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~-~~gy~~~~~~ 320 (376)
+ ++|+|||||||++|||||||| |+...++.+||+|||++|+|++|+|+++.+..++ ....+..+ ++||+|+|++
T Consensus 235 ~~~~Y~TIHVTPE~~~SYaSFET---N~~~~~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~gy~~~d~~ 311 (334)
T 1jl0_A 235 SDGTYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQ 311 (334)
T ss_dssp TTSCEEEEEEECCTTSCEEEEEE---CCCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCCCCeeEEEEc---CcccccHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCCCcEeccce
Confidence 5 599999999999999999999 5566689999999999999999999999887654 32333444 8999999999
Q ss_pred eeeCCCCcEEEEEEEEECCC
Q 035670 321 KQELAGGGCVVYKTYSVDPN 340 (376)
Q Consensus 321 ~~~~~~gy~l~y~~f~~~~~ 340 (376)
.++|+ ||+|+|++|+|..+
T Consensus 312 ~~~~~-~y~l~y~~f~r~~~ 330 (334)
T 1jl0_A 312 SAMFN-DYNFVFTSFAKKQQ 330 (334)
T ss_dssp EEECS-SEEEEEEEEEECC-
T ss_pred EEecC-CeEEEEEEEEEccc
Confidence 99999 69999999999874
No 2
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=100.00 E-value=5e-106 Score=777.11 Aligned_cols=282 Identities=54% Similarity=0.925 Sum_probs=231.0
Q ss_pred ceeeeeCCeEEEeccCccchhccHHHHHHHHhhcCceeEEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhCCC--CCc
Q 035670 76 SSLFVFPSKIILKTCGTTKLLSSIPQILKLSDSLSLAVSSVKYSRGSFIFPNYQPSPHCCFSEEVSTLNEHFGYL--NAK 153 (376)
Q Consensus 76 SSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~--~g~ 153 (376)
|||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|+++ +|+
T Consensus 1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~ 80 (288)
T 1mhm_A 1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK 80 (288)
T ss_dssp -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999764 489
Q ss_pred eEEecCCCCCCCcEEEEecCCCC--CCCCcceEEEEecCCCHHhhcccccCCCCCCCHHHHHHHhCCccccCCCcccccc
Q 035670 154 AHVIGDPKFPNRNWHVYSASKER--SFDGVVTLEMCMTGLDRKKAAVFYKSSSGPGGASEMTKMSGISEILPSHVICDFE 231 (376)
Q Consensus 154 aY~~G~~~~~~~hW~ly~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~~~t~~sgi~~l~p~~~id~f~ 231 (376)
||+||++|++ ||||||+++... ..++|+|||||||+||+++|++||++++ ++|.+||+.+||++|+|+++||||+
T Consensus 81 aY~~G~~~~~-~~W~lY~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~--~sa~~~t~~sGi~~i~P~~~iddf~ 157 (288)
T 1mhm_A 81 AVIMGSPDKT-QKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEE--SSAAHMTVRSGIRKILPKSEICDFE 157 (288)
T ss_dssp EEEESSSCSS-CCEEEEEEESCCCCCSSCCCEEEEEEEEECHHHHHTTSCCSS--CCHHHHHHHHTGGGTSTTSEEEEEE
T ss_pred eEEeCCCCCC-CceEEEeCCCCcccCCCCcceEEEeecCCCHHHHHhhhcccc--ccHHHHHHHhChhhcCCCcEeeccc
Confidence 9999999986 999999987432 4568999999999999999999999887 8999999999999999999999999
Q ss_pred cCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEEeCCCCc-ccccccCC
Q 035670 232 FDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVTCGSGTQ-WWSMEGAD 310 (376)
Q Consensus 232 F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~~~~~~~-~~~~~~~~ 310 (376)
|+|||||||||.|++|+|||||||++|||||||||++|.+..++.+||+|||++|+|++|+|+++++..++ .......+
T Consensus 158 F~PCGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~~~~~~~~ 237 (288)
T 1mhm_A 158 FEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVD 237 (288)
T ss_dssp CSSSCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHCEEEEEEEEEESSCHHHHHHHHCCC
T ss_pred cCCccceeccccCCceEEEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeCCCEEEEEEEecccchhhhhhccCC
Confidence 99999999999999999999999999999999999988887899999999999999999999998886544 22223357
Q ss_pred CCCcccccceeeeCCCCcEEEEEEEEECCCCcCCCCCCCC-CCccccchhhhhccc
Q 035670 311 VEGYSSETAVKQELAGGGCVVYKTYSVDPNARCAVSAPPK-VPKHCWKEVAAEEES 365 (376)
Q Consensus 311 ~~gy~~~~~~~~~~~~gy~l~y~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 365 (376)
++||+|.|++.++|++||+|+|.+|+|.. .|| ||| +||+||+++++|+++
T Consensus 238 ~~gy~~~~~~~~~l~~gy~l~y~~f~~~~--~~~---~p~~~~~~~~~~~~~~~~~ 288 (288)
T 1mhm_A 238 VKGYSLAEWSPEEFGEGGSIVYQKFTRTP--YCE---SPKSVLKGCWKEEEKEGKE 288 (288)
T ss_dssp CTTEEEEEEEEEECGGGCEEEEEEEEEC----------------------------
T ss_pred cCCCeEcccEEEECCCCcEEEEEEEeccC--CCC---CCcchhhhhhcccccccCC
Confidence 89999999999999999999999999976 467 999 999999999888764
No 3
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=99.96 E-value=1.2e-29 Score=199.56 Aligned_cols=71 Identities=58% Similarity=0.891 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCccceEEEEEecCCCCCCCCCcccccccCHHHHHHHhhccCCeEEeeecCCceeeeeccC
Q 035670 5 SSPPVASPIGFEGFEKRLEITFSPAPIFTDPSGLGLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSE 75 (376)
Q Consensus 5 ~~~~~~s~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 75 (376)
.|.+++++.+|||+||||||||.+++.+.++++.|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus 2 ~~~~~~s~~~FEG~EK~LEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 72 (72)
T 1mhm_B 2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE 72 (72)
T ss_dssp -------------CEEEEEEEECCCCCC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred CcccCCCCCCcccceEEEEEEEecCCccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence 36788999999999999999999876556678899999999999999999999999999999999999998
No 4
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=93.97 E-value=0.063 Score=46.93 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=69.5
Q ss_pred EEEEecCCCHHhhcccccCCCC-CCCHHHHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEE
Q 035670 184 LEMCMTGLDRKKAAVFYKSSSG-PGGASEMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYAS 262 (376)
Q Consensus 184 lEilMt~Ld~~~a~~F~~~~~~-~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaS 262 (376)
+=+=+|+-+++... +... ...-.+..+..|..-+ .+.-+.|+|=|+|.=+|..+...+||.=||.+ ||+
T Consensus 20 li~DlygC~~~~L~----D~e~l~~~l~eAa~~~gatvl----~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAa 89 (142)
T 1vr7_A 20 LVAEFYECDREVLD----NVQLIEQEMKQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAA 89 (142)
T ss_dssp EEEEEESCCHHHHT----CHHHHHHHHHHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEE
T ss_pred EEEEEcCCChHHCC----CHHHHHHHHHHHHHHcCCEEe----EEEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEE
Confidence 33445677766533 1110 0122334555555433 34568899999999999999999999999999 566
Q ss_pred EEecCCCCCcCCHHHHHHHHhhccCCCeEEEEEE
Q 035670 263 YEAAGFDLRLVRFEPLVKRVLNSFAPREFSVAVT 296 (376)
Q Consensus 263 FETn~~~~~~~~~~~li~~VL~~F~P~~f~v~~~ 296 (376)
...--++ ...++...++-+.+.|+|.+..+...
T Consensus 90 vDVftCg-~~~~P~~a~~~L~~~f~a~~~~~~~~ 122 (142)
T 1vr7_A 90 IDLFTCG-EDVDPWKAFEHLKKALKAKRVHVVEH 122 (142)
T ss_dssp EEEEEES-TTCCHHHHHHHHHHHHTCSEEEEEEE
T ss_pred EEEEccC-CCCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 6652112 22478899999999999999998733
No 5
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=93.04 E-value=0.062 Score=46.51 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=58.4
Q ss_pred HHHHHhCCccccCCCcccccccCCCcccccCCCCCceEEEEecCCCCCeEEEEEecCCCCCcCCHHHHHHHHhhccCCCe
Q 035670 211 EMTKMSGISEILPSHVICDFEFDPCGYSMNGIDGPAFSTVHVTPEDGFSYASYEAAGFDLRLVRFEPLVKRVLNSFAPRE 290 (376)
Q Consensus 211 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~li~~VL~~F~P~~ 290 (376)
+..+..|..-+- +.-+.|+|=|+|.=+|..+...+||.=||.+ ||+...--++ ...++...++-+.+.|+|.+
T Consensus 33 ~aa~~~gatvl~----~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvftCg-~~~~P~~a~~~l~~~f~a~~ 105 (135)
T 2iii_A 33 GAVKYANLTKIS----SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVYTCG-DPSKAYRAMDYIITQLNPKR 105 (135)
T ss_dssp HHHHHTTCCEEE----EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEEEES-CHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHcCCEEEE----EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEEccC-CCCCHHHHHHHHHHHhCCCe
Confidence 344555554432 4568899999999999999999999999999 5666552111 12368889999999999999
Q ss_pred EEEEEE
Q 035670 291 FSVAVT 296 (376)
Q Consensus 291 f~v~~~ 296 (376)
..+...
T Consensus 106 ~~~~~~ 111 (135)
T 2iii_A 106 IDKQVH 111 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998733
No 6
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=20.88 E-value=12 Score=35.90 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=51.1
Q ss_pred cccccCHHHHHHHhhccCCeEEeeecCCceeeeecc---------------------CceeeeeCCeEEEeccCccchhc
Q 035670 39 GLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLS---------------------ESSLFVFPSKIILKTCGTTKLLS 97 (376)
Q Consensus 39 gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLS---------------------ESSLFV~~~kiILKTCGTTtLL~ 97 (376)
-.++|+.++|+.+.+.++-.+-..+....++.|+=. ..+|.||.++ =+-|||
T Consensus 190 ~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~--g~PCG~----- 262 (295)
T 3vk8_A 190 LGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKK--KDPNGN----- 262 (295)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHHHHHHCSCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCS--BCTTSC-----
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhCCCcceecCCCCcccccccccccccccccccceEEEeCCC--CCCCCC-----
Confidence 356799999999998877655555545556666422 5678888763 234644
Q ss_pred cHHHHHHHHhhcCceeEEEEE------cccccCCCCCCCCCCCC
Q 035670 98 SIPQILKLSDSLSLAVSSVKY------SRGSFIFPNYQPSPHCC 135 (376)
Q Consensus 98 ~l~~ll~la~~~~~~v~~v~Y------sRknf~fP~~Q~~pH~s 135 (376)
.|.+..+ .|..|+.|..|+-.|..
T Consensus 263 --------------~I~~~~~~~~~~~~R~t~~CP~CQ~~~~~~ 292 (295)
T 3vk8_A 263 --------------KVIADKIIGSGKNKRTTYWAPAIQKLEHHH 292 (295)
T ss_dssp --------------BCEEEECSCCTTCCCEEEECTTTCBCC---
T ss_pred --------------cEEEEEecCCCCCCCccEECCCCCCCcccc
Confidence 3556666 79999999999998753
No 7
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=17.69 E-value=4.5e+02 Score=22.12 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCeEEeeecC----Ccee-eeeccCcee--eeeCCe----EEEeccCc-cchhccHHHHHHHHhhcCc-
Q 035670 45 RSQLDSFLDLAKCTIVSQLSN----TEFD-SYVLSESSL--FVFPSK----IILKTCGT-TKLLSSIPQILKLSDSLSL- 111 (376)
Q Consensus 45 r~~w~~~L~~a~C~IlS~~sn----~~~D-AYvLSESSL--FV~~~k----iILKTCGT-TtLL~~l~~ll~la~~~~~- 111 (376)
++...+..+.++.+|++...- .++- .-||+||=+ =.||.. +=+=|||. +....++..|.+ .++-
T Consensus 28 ~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvllaESHisIHTwPE~gyaavDvftCg~~~~P~~a~~~l~~---~f~a~ 104 (135)
T 2iii_A 28 RELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAESHISIHTWPEHGLATVDVYTCGDPSKAYRAMDYIIT---QLNPK 104 (135)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC-CEEEEEEEGGGTEEEEEEEEESCHHHHHHHHHHHHH---HHCCS
T ss_pred HHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEecccEEEEEeCCCCCcEEEEEEccCCCCCHHHHHHHHHH---HhCCC
Confidence 566788889999999997642 1222 248899954 457764 66889999 488888888544 4442
Q ss_pred eeEEEEEcccccCCCC
Q 035670 112 AVSSVKYSRGSFIFPN 127 (376)
Q Consensus 112 ~v~~v~YsRknf~fP~ 127 (376)
++..-...|+.+--+.
T Consensus 105 ~~~~~~~~RG~~~~~~ 120 (135)
T 2iii_A 105 RIDKQVHERGIVEEES 120 (135)
T ss_dssp EEEEEEEEEEEECSSC
T ss_pred eEEEEEEeCCCccccc
Confidence 4555555666554444
No 8
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=13.19 E-value=1.4e+02 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=30.2
Q ss_pred cccccCHHHHHHHhhccCCeEEeeecCCceeeeeccC
Q 035670 39 GLRALTRSQLDSFLDLAKCTIVSQLSNTEFDSYVLSE 75 (376)
Q Consensus 39 gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 75 (376)
.|..++|++|.++++..+.++.+.++. ..|-.|..|
T Consensus 43 ~l~~~~R~e~~~~i~~~Gg~v~~sVSk-kTd~LV~G~ 78 (109)
T 2k6g_A 43 VLESIERDEAKSLIERYGGKVTGNVSK-KTNYLVMGR 78 (109)
T ss_dssp BCSSCCHHHHHHHHHHTTCEEESSCCT-TCCEEEECB
T ss_pred eCCCCCHHHHHHHHHHcCCEeeCcccC-CceEEEECC
Confidence 466889999999999999999998875 667777666
No 9
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=12.35 E-value=1.5e+02 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.5
Q ss_pred ccccCHHHHHHHhhccCCeEEeeecCCceeee
Q 035670 40 LRALTRSQLDSFLDLAKCTIVSQLSNTEFDSY 71 (376)
Q Consensus 40 LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAY 71 (376)
+|..+.++|.++|+.|+-+++....+-....+
T Consensus 198 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 229 (243)
T 3d2l_A 198 QRTYPPEQYITWLREAGFRVCAVTGDFKSDAP 229 (243)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEEETTSSSCC
T ss_pred EecCCHHHHHHHHHHCCCeEEEEecCcccCCC
Confidence 46789999999999999999999876554444
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.33 E-value=1.5e+02 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=19.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhCCC
Q 035670 126 PNYQPSPHCCFSEEVSTLNEHFGYL 150 (376)
Q Consensus 126 P~~Q~~pH~sf~~Ev~~L~~~F~~~ 150 (376)
|. |..++..|.+-++.|.+.||++
T Consensus 9 ~~-~~~~~~~~~~~v~~L~~MFP~l 32 (67)
T 2dhy_A 9 PA-RQVRRLEFNQAMDDFKTMFPNM 32 (67)
T ss_dssp CC-CCCCCCCSHHHHHHHHHHCSSS
T ss_pred cc-hhccCCCHHHHHHHHHHHCCCC
Confidence 44 3456778999999999999986
Done!