BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035673
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 24/144 (16%)
Query: 21 DIEAVYQCLQTEYGVSQEDLILYGQSVGSGPTLHLASK-LPRLRGVVLHSGILSGLRVLC 79
D++A + E G+ E L L G S G+ LH+A + + G+V SG R+L
Sbjct: 140 DLDAFHDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSG-----RLLA 194
Query: 80 HVKFTFCCDIYXXXXXXXXXXCPVLVIHGTEDDVVNW----LHGNKLWKMARDPYEPLWI 135
+ PVL++HG D VV + L G L + Y + +
Sbjct: 195 PERLA----------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHV-M 243
Query: 136 KGGGHCNLELYPDYIRHLCRFIQE 159
KG GH + PD + F++E
Sbjct: 244 KGTGHG---IAPDGLSVALAFLKE 264
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 21 DIEAVYQCLQTEYGVSQEDLILYGQSVGSGPTLHLASK-LPRLRGVVLHSGILSGLRVLC 79
D++A E G+ E L L G S G+ LH+A + + G+V SG R+L
Sbjct: 140 DLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSG-----RLLA 194
Query: 80 HVKFTFCCDIYXXXXXXXXXXCPVLVIHGTEDDVVNW----LHGNKLWKMARDPYEPLWI 135
+ PVL++HG D VV + L G L + Y + +
Sbjct: 195 PERLA----------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHV-M 243
Query: 136 KGGGHCNLELYPDYIRHLCRFIQE 159
KG GH + PD + F++E
Sbjct: 244 KGTGHG---IAPDGLSVALAFLKE 264
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 30 QTEYGVSQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKFTFCCDI 89
Q G++ E +IL G S G LH A + ++ L G+ L T+
Sbjct: 108 QRAKGIAAERIILAGFSQGGAVVLHTAFRR--------YAQPLGGVLALS----TYAPTF 155
Query: 90 YXXXXXXXXXXCPVLVIHGTEDDVVN 115
PVL +HG++DDVV+
Sbjct: 156 DDLALDERHKRIPVLHLHGSQDDVVD 181
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 102 PVLVIHGTEDDVVNWLHGNKLW 123
P+LV G +D + NWL GNK W
Sbjct: 329 PILVYAGDKDFICNWL-GNKAW 349
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 102 PVLVIHGTEDDVVNWLHGNKLW 123
P+LV G +D + NWL GNK W
Sbjct: 329 PILVYAGDKDFICNWL-GNKAW 349
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 101 CPVLVIHGTEDDVVNWLHGNKLWKMARDPYEPLWIKGGGHCNLELYPDYIRHLCRFIQ 158
CP L++HG +D +V H + + K + L +G + +L ++ + F+Q
Sbjct: 197 CPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 101 CPVLVIHGTEDDVVNWLHGNKLWKMARDPYEPLWIKGGGHCNLELYPDYIRHLCRFIQ 158
CP L++HG +D +V H + + K + L +G + +L ++ + F+Q
Sbjct: 197 CPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 101 CPVLVIHGTEDDVVNWLHGNKLWKMARDPYEPLWIKGGGHCNLELYPDYIRHLCRFIQ 158
CP L++HG +D +V H + + K + L +G + +L ++ + F+Q
Sbjct: 197 CPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 35 VSQEDLILYGQSVGSGPTLHLASKLPRLRGVV 66
+ L + G S+G G TL LAS+ P L+ +
Sbjct: 164 IDASRLAVMGHSMGGGGTLRLASQRPDLKAAI 195
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 39 DLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKF 83
DLI + Q G GP+L + + + R + L I+ + H++
Sbjct: 74 DLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 118
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 39 DLILYGQSVGSGPTLHLASKLPRLRGVVLHSGILSGLRVLCHVKF 83
DLI + Q G GP+L + + + R + L I+ + H++
Sbjct: 69 DLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 113
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 2 DYSGYGASTGK--PSES---NTYADIEAVYQCLQTEYGVSQEDLILYGQSVGSGPTLHLA 56
D G+G ST P S YAD A+ + +Q + G++ D +++G S+G + +
Sbjct: 58 DLPGHGKSTDAIDPDRSYSMEGYAD--AMTEVMQ-QLGIA--DAVVFGWSLGGHIGIEMI 112
Query: 57 SKLPRLRGVVL 67
++ P +RG+++
Sbjct: 113 ARYPEMRGLMI 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,035,260
Number of Sequences: 62578
Number of extensions: 239938
Number of successful extensions: 505
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 16
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)