BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035677
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
           Thaliana (Atsk2)
 pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
           Thaliana (Atsk2)
          Length = 250

 Score = 26.6 bits (57), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 91  IMSPRIKYA--DCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMY 148
           IM+  + Y   DC   + +A  G+   ++    GE  F+E + E LK+       L +MY
Sbjct: 67  IMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKK-------LSLMY 119

Query: 149 NQ 150
           +Q
Sbjct: 120 HQ 121


>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
 pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
          Length = 609

 Score = 26.6 bits (57), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 68  RLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF------- 120
           R  +  Y+ + + E   ++       P IKY D Q  + R  NG     LSA        
Sbjct: 47  RNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLT 106

Query: 121 -----SGELTFKEAQYEELKRERQILKQL 144
                +GE        EEL R RQ+L  L
Sbjct: 107 SSGTSAGERKLMPTIQEELDR-RQMLYSL 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,005,203
Number of Sequences: 62578
Number of extensions: 122828
Number of successful extensions: 233
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 9
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)