Query 035677
Match_columns 168
No_of_seqs 133 out of 470
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 1.9E-13 4.1E-18 93.8 9.0 62 49-110 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 8.8E-12 1.9E-16 85.4 9.0 61 50-110 3-63 (64)
3 PF07716 bZIP_2: Basic region 99.2 2.9E-10 6.3E-15 75.8 8.4 52 49-101 2-53 (54)
4 KOG4005 Transcription factor X 99.1 3.3E-09 7.1E-14 90.9 12.6 75 49-123 66-140 (292)
5 KOG4343 bZIP transcription fac 98.9 1.4E-08 3E-13 94.8 9.8 64 51-114 280-343 (655)
6 KOG0709 CREB/ATF family transc 98.6 8.9E-08 1.9E-12 88.0 7.2 70 47-116 246-315 (472)
7 KOG3584 cAMP response element 98.6 3E-07 6.6E-12 80.8 8.6 56 48-103 287-342 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 2.9E-07 6.3E-12 67.4 -5.2 60 44-103 22-81 (92)
9 KOG0837 Transcriptional activa 97.4 0.00068 1.5E-08 59.0 7.7 63 50-119 203-266 (279)
10 KOG4571 Activating transcripti 96.8 0.0074 1.6E-07 53.2 8.8 46 44-89 218-264 (294)
11 PF06156 DUF972: Protein of un 96.7 0.0086 1.9E-07 45.5 7.3 50 73-122 8-57 (107)
12 PRK13169 DNA replication intia 96.6 0.011 2.5E-07 45.2 7.3 49 74-122 9-57 (110)
13 KOG3119 Basic region leucine z 96.2 0.075 1.6E-06 45.9 11.0 49 59-107 201-249 (269)
14 KOG4196 bZIP transcription fac 96.2 0.091 2E-06 41.7 10.4 68 47-121 48-115 (135)
15 PF11559 ADIP: Afadin- and alp 96.1 0.29 6.4E-06 38.1 13.1 82 66-147 45-126 (151)
16 COG4467 Regulator of replicati 96.0 0.027 5.9E-07 43.4 6.6 46 74-119 9-54 (114)
17 KOG4005 Transcription factor X 96.0 0.38 8.2E-06 42.0 14.0 90 43-132 64-156 (292)
18 PF14197 Cep57_CLD_2: Centroso 95.8 0.11 2.3E-06 36.7 8.4 61 77-144 2-62 (69)
19 PF14197 Cep57_CLD_2: Centroso 95.8 0.2 4.2E-06 35.3 9.6 50 73-122 12-61 (69)
20 PF06005 DUF904: Protein of un 95.0 0.76 1.6E-05 32.6 10.6 48 74-121 5-52 (72)
21 COG1579 Zn-ribbon protein, pos 94.9 2 4.2E-05 37.1 14.9 98 50-147 29-135 (239)
22 PF14662 CCDC155: Coiled-coil 94.6 0.32 6.9E-06 40.8 9.0 71 73-147 8-78 (193)
23 PRK10884 SH3 domain-containing 93.9 0.73 1.6E-05 38.6 10.0 49 89-137 120-168 (206)
24 PRK15422 septal ring assembly 93.3 1.7 3.8E-05 31.7 9.7 41 74-114 5-45 (79)
25 COG3074 Uncharacterized protei 93.2 1.9 4.2E-05 31.1 9.6 10 75-84 6-15 (79)
26 PF05700 BCAS2: Breast carcino 93.1 2.4 5.1E-05 35.4 11.8 78 73-150 136-217 (221)
27 PF06005 DUF904: Protein of un 93.0 0.83 1.8E-05 32.5 7.5 11 132-142 42-52 (72)
28 PF08614 ATG16: Autophagy prot 92.9 2.8 6.1E-05 34.1 11.7 24 75-98 118-141 (194)
29 PF10224 DUF2205: Predicted co 92.9 0.77 1.7E-05 33.4 7.4 48 76-123 19-66 (80)
30 PF10146 zf-C4H2: Zinc finger- 92.8 2.1 4.4E-05 36.6 11.0 74 71-144 30-103 (230)
31 COG2433 Uncharacterized conser 92.5 1.4 2.9E-05 42.8 10.5 69 73-145 422-490 (652)
32 TIGR02449 conserved hypothetic 92.5 0.99 2.1E-05 31.7 7.3 46 75-120 9-54 (65)
33 PF04102 SlyX: SlyX; InterPro 92.4 0.87 1.9E-05 31.7 6.9 50 73-122 4-53 (69)
34 PF07989 Microtub_assoc: Micro 92.2 2.5 5.3E-05 30.2 9.2 47 75-121 2-56 (75)
35 PF05911 DUF869: Plant protein 92.1 2.5 5.4E-05 42.0 12.0 71 75-146 136-207 (769)
36 PRK02793 phi X174 lysis protei 92.1 1.3 2.8E-05 31.3 7.5 50 73-122 8-57 (72)
37 PRK00295 hypothetical protein; 92.0 1.2 2.7E-05 31.1 7.3 47 75-121 7-53 (68)
38 PRK02119 hypothetical protein; 91.9 1.2 2.5E-05 31.6 7.2 49 73-121 9-57 (73)
39 PRK00736 hypothetical protein; 91.7 1.6 3.4E-05 30.5 7.5 48 74-121 6-53 (68)
40 PRK04325 hypothetical protein; 91.6 1.6 3.4E-05 31.0 7.5 47 75-121 11-57 (74)
41 PF12325 TMF_TATA_bd: TATA ele 91.5 5.3 0.00011 30.9 11.9 43 107-149 74-116 (120)
42 PRK04406 hypothetical protein; 91.5 1.6 3.4E-05 31.2 7.5 49 73-121 11-59 (75)
43 KOG3863 bZIP transcription fac 91.5 0.42 9E-06 46.1 5.8 62 54-122 492-553 (604)
44 TIGR02449 conserved hypothetic 91.3 3.5 7.5E-05 29.0 8.9 61 75-145 2-62 (65)
45 TIGR02894 DNA_bind_RsfA transc 90.6 3.3 7.1E-05 33.9 9.4 67 73-146 87-156 (161)
46 PF09730 BicD: Microtubule-ass 90.6 6.4 0.00014 38.9 13.0 93 49-146 41-138 (717)
47 PF02183 HALZ: Homeobox associ 90.1 1 2.2E-05 29.3 5.0 38 85-122 3-40 (45)
48 PF04111 APG6: Autophagy prote 90.1 8.4 0.00018 34.0 12.4 47 75-121 45-91 (314)
49 TIGR03752 conj_TIGR03752 integ 90.0 2.7 5.9E-05 39.5 9.6 41 82-122 61-101 (472)
50 PF07106 TBPIP: Tat binding pr 89.8 4.6 0.0001 31.9 9.7 72 73-144 86-160 (169)
51 PF13747 DUF4164: Domain of un 89.8 6.3 0.00014 28.9 10.0 71 51-121 10-80 (89)
52 PF12711 Kinesin-relat_1: Kine 89.7 6.6 0.00014 29.0 9.6 58 84-143 21-84 (86)
53 PF08614 ATG16: Autophagy prot 89.5 2 4.4E-05 34.9 7.5 44 78-121 114-157 (194)
54 PRK00846 hypothetical protein; 89.3 3.2 6.9E-05 30.0 7.6 49 73-121 13-61 (77)
55 COG3074 Uncharacterized protei 88.6 2.4 5.1E-05 30.7 6.4 39 77-115 22-60 (79)
56 PRK11637 AmiB activator; Provi 88.2 11 0.00024 34.0 12.1 7 140-146 129-135 (428)
57 PRK13729 conjugal transfer pil 88.1 3.2 7E-05 39.1 8.7 46 74-119 77-122 (475)
58 PRK11637 AmiB activator; Provi 88.0 15 0.00033 33.1 12.8 42 75-116 77-118 (428)
59 PF12325 TMF_TATA_bd: TATA ele 87.7 11 0.00024 29.1 11.1 36 78-113 28-63 (120)
60 PF12711 Kinesin-relat_1: Kine 87.6 2.5 5.4E-05 31.2 6.2 65 80-145 3-67 (86)
61 KOG2010 Double stranded RNA bi 87.3 3.9 8.4E-05 37.3 8.4 66 75-147 121-186 (405)
62 PF14662 CCDC155: Coiled-coil 87.3 8.4 0.00018 32.4 9.9 44 76-119 98-141 (193)
63 PF04111 APG6: Autophagy prote 87.2 16 0.00035 32.2 12.2 73 71-143 62-134 (314)
64 PF05837 CENP-H: Centromere pr 87.2 8.2 0.00018 28.9 8.9 66 81-147 4-69 (106)
65 TIGR03752 conj_TIGR03752 integ 86.7 11 0.00023 35.7 11.3 64 77-147 70-134 (472)
66 PF00038 Filament: Intermediat 86.6 15 0.00033 31.3 11.5 57 91-147 86-142 (312)
67 PF09738 DUF2051: Double stran 86.6 15 0.00032 32.7 11.6 75 44-118 84-164 (302)
68 PF04849 HAP1_N: HAP1 N-termin 86.5 7.1 0.00015 34.9 9.6 55 84-145 231-285 (306)
69 PF05266 DUF724: Protein of un 86.5 17 0.00037 30.1 12.0 85 49-147 86-170 (190)
70 PF07888 CALCOCO1: Calcium bin 86.4 32 0.0007 33.1 14.9 56 57-112 155-210 (546)
71 KOG4674 Uncharacterized conser 86.0 5.4 0.00012 43.1 9.8 67 79-145 1256-1323(1822)
72 KOG3650 Predicted coiled-coil 85.6 3 6.6E-05 32.0 5.9 46 78-123 61-106 (120)
73 PF00038 Filament: Intermediat 85.1 23 0.00049 30.2 12.0 67 81-147 210-280 (312)
74 COG3883 Uncharacterized protei 84.7 18 0.00038 31.8 11.0 50 73-122 38-87 (265)
75 PF10805 DUF2730: Protein of u 84.3 11 0.00023 28.3 8.3 59 64-122 32-93 (106)
76 KOG0995 Centromere-associated 84.0 13 0.00028 36.0 10.5 47 72-118 279-325 (581)
77 COG4942 Membrane-bound metallo 84.0 37 0.00079 31.7 13.2 73 52-124 38-110 (420)
78 PF04728 LPP: Lipoprotein leuc 83.8 12 0.00025 25.7 7.6 43 75-117 5-47 (56)
79 PF09755 DUF2046: Uncharacteri 83.8 32 0.0007 30.9 12.4 40 76-115 23-62 (310)
80 PF04156 IncA: IncA protein; 83.6 20 0.00044 28.4 12.0 48 75-122 90-137 (191)
81 PRK09039 hypothetical protein; 83.5 15 0.00033 32.7 10.4 41 83-123 126-166 (343)
82 PF07888 CALCOCO1: Calcium bin 83.3 39 0.00085 32.5 13.5 58 62-119 146-203 (546)
83 PRK09039 hypothetical protein; 83.2 34 0.00073 30.6 14.2 65 77-141 113-177 (343)
84 PF06156 DUF972: Protein of un 82.9 8.6 0.00019 29.2 7.4 50 91-147 5-54 (107)
85 KOG1414 Transcriptional activa 82.5 0.054 1.2E-06 49.0 -5.6 63 45-107 147-213 (395)
86 KOG4807 F-actin binding protei 82.5 23 0.00051 33.4 11.3 76 70-145 390-490 (593)
87 KOG0239 Kinesin (KAR3 subfamil 82.4 15 0.00033 35.9 10.6 70 75-144 243-315 (670)
88 PF13870 DUF4201: Domain of un 81.9 22 0.00048 28.2 9.9 70 77-146 95-169 (177)
89 PF04880 NUDE_C: NUDE protein, 81.8 2.7 5.8E-05 34.4 4.6 53 75-131 2-54 (166)
90 PF15294 Leu_zip: Leucine zipp 81.8 5.4 0.00012 35.2 6.7 45 78-122 130-174 (278)
91 PF07798 DUF1640: Protein of u 81.2 16 0.00035 29.3 8.9 46 77-122 48-94 (177)
92 PF14817 HAUS5: HAUS augmin-li 80.5 43 0.00094 32.7 12.9 80 67-146 73-152 (632)
93 PF06216 RTBV_P46: Rice tungro 80.4 11 0.00023 33.7 8.1 55 68-122 55-113 (389)
94 PF05377 FlaC_arch: Flagella a 79.8 9.5 0.00021 26.0 6.0 34 75-122 2-35 (55)
95 PF10174 Cast: RIM-binding pro 79.7 24 0.00053 35.2 11.1 49 92-140 327-375 (775)
96 PF02183 HALZ: Homeobox associ 79.5 11 0.00023 24.5 5.9 15 130-144 27-41 (45)
97 KOG0977 Nuclear envelope prote 79.4 43 0.00092 32.3 12.2 49 73-121 141-189 (546)
98 PF04156 IncA: IncA protein; 79.3 30 0.00064 27.5 10.1 20 74-93 96-115 (191)
99 TIGR00219 mreC rod shape-deter 79.0 12 0.00026 32.6 7.9 40 105-147 70-109 (283)
100 PF07106 TBPIP: Tat binding pr 78.8 17 0.00038 28.7 8.2 26 75-100 81-106 (169)
101 PF12718 Tropomyosin_1: Tropom 78.8 30 0.00065 27.2 9.8 11 112-122 77-87 (143)
102 PF09304 Cortex-I_coil: Cortex 78.6 28 0.0006 26.8 9.2 11 128-138 83-93 (107)
103 KOG4360 Uncharacterized coiled 78.4 17 0.00038 34.9 9.2 48 75-122 221-268 (596)
104 PF04849 HAP1_N: HAP1 N-termin 78.2 22 0.00048 31.8 9.5 62 74-142 242-303 (306)
105 PF01166 TSC22: TSC-22/dip/bun 77.9 4.5 9.7E-05 28.0 3.9 30 88-117 15-44 (59)
106 KOG0250 DNA repair protein RAD 77.8 94 0.002 32.4 14.9 82 64-145 370-452 (1074)
107 PF05103 DivIVA: DivIVA protei 77.5 1.5 3.3E-05 32.7 1.7 46 73-118 25-70 (131)
108 PF15030 DUF4527: Protein of u 77.1 51 0.0011 29.0 12.9 98 43-140 6-104 (277)
109 PRK13169 DNA replication intia 76.9 14 0.00031 28.3 6.9 49 91-146 5-53 (110)
110 PF15058 Speriolin_N: Sperioli 76.9 4.7 0.0001 34.0 4.6 40 99-138 10-49 (200)
111 PF10481 CENP-F_N: Cenp-F N-te 76.8 42 0.00091 30.0 10.6 66 81-146 61-126 (307)
112 PF08317 Spc7: Spc7 kinetochor 76.8 34 0.00074 30.0 10.2 72 72-143 183-258 (325)
113 PF08647 BRE1: BRE1 E3 ubiquit 76.7 27 0.00058 25.6 12.5 75 56-130 7-82 (96)
114 PF00170 bZIP_1: bZIP transcri 76.6 15 0.00034 24.5 6.4 22 99-120 31-52 (64)
115 PF15290 Syntaphilin: Golgi-lo 76.5 29 0.00062 31.1 9.5 12 134-145 122-133 (305)
116 PF10186 Atg14: UV radiation r 76.2 44 0.00094 27.7 11.3 76 69-144 59-134 (302)
117 TIGR03495 phage_LysB phage lys 76.0 37 0.00081 26.9 10.0 70 76-145 29-98 (135)
118 PRK13922 rod shape-determining 75.9 48 0.001 28.0 10.8 42 102-147 70-111 (276)
119 COG2433 Uncharacterized conser 75.8 41 0.00089 33.0 11.1 90 58-147 420-513 (652)
120 KOG4643 Uncharacterized coiled 75.8 16 0.00034 37.8 8.6 60 84-143 312-371 (1195)
121 PRK15422 septal ring assembly 75.4 29 0.00063 25.3 9.1 34 84-117 8-41 (79)
122 KOG4343 bZIP transcription fac 75.3 3.9 8.5E-05 39.4 4.2 33 90-122 305-337 (655)
123 TIGR02209 ftsL_broad cell divi 75.0 24 0.00053 24.4 7.3 37 88-124 25-61 (85)
124 TIGR03185 DNA_S_dndD DNA sulfu 75.0 59 0.0013 31.1 12.0 11 157-167 507-517 (650)
125 PF15619 Lebercilin: Ciliary p 74.9 47 0.001 27.5 12.3 84 63-146 8-113 (194)
126 KOG0161 Myosin class II heavy 74.6 51 0.0011 36.3 12.4 66 57-122 1644-1709(1930)
127 PF04977 DivIC: Septum formati 74.3 20 0.00044 24.1 6.6 27 94-120 24-50 (80)
128 COG2900 SlyX Uncharacterized p 74.2 29 0.00062 25.0 7.4 48 74-121 9-56 (72)
129 PF15035 Rootletin: Ciliary ro 74.1 23 0.00051 29.1 8.0 39 100-145 73-111 (182)
130 PF08172 CASP_C: CASP C termin 73.9 11 0.00024 32.4 6.3 50 63-121 85-134 (248)
131 PRK00888 ftsB cell division pr 73.8 19 0.00042 26.9 6.9 27 95-121 35-61 (105)
132 PF10473 CENP-F_leu_zip: Leuci 73.6 44 0.00096 26.6 14.4 71 53-123 32-102 (140)
133 PF12329 TMF_DNA_bd: TATA elem 73.4 29 0.00063 24.4 9.5 64 75-145 7-70 (74)
134 TIGR00219 mreC rod shape-deter 73.1 11 0.00023 32.9 6.0 39 81-119 67-109 (283)
135 KOG0982 Centrosomal protein Nu 73.0 34 0.00073 32.4 9.5 37 74-110 298-334 (502)
136 KOG1899 LAR transmembrane tyro 72.7 83 0.0018 31.4 12.3 85 57-143 129-219 (861)
137 PRK13922 rod shape-determining 72.4 35 0.00076 28.8 8.9 49 67-119 63-111 (276)
138 PF08581 Tup_N: Tup N-terminal 71.7 35 0.00076 24.6 10.5 69 74-145 5-73 (79)
139 KOG0963 Transcription factor/C 71.6 37 0.0008 33.2 9.7 44 93-144 316-359 (629)
140 KOG1962 B-cell receptor-associ 71.5 64 0.0014 27.6 11.2 51 87-144 158-208 (216)
141 PRK00888 ftsB cell division pr 70.6 24 0.00053 26.4 6.8 34 69-102 30-63 (105)
142 KOG3119 Basic region leucine z 70.5 30 0.00066 29.9 8.2 29 89-117 217-245 (269)
143 PF00769 ERM: Ezrin/radixin/mo 70.4 38 0.00082 28.9 8.7 67 78-144 52-118 (246)
144 PF11559 ADIP: Afadin- and alp 70.2 48 0.001 25.6 13.9 63 55-117 48-110 (151)
145 COG3883 Uncharacterized protei 69.3 61 0.0013 28.5 9.8 47 76-122 48-94 (265)
146 PF09755 DUF2046: Uncharacteri 69.1 88 0.0019 28.2 14.7 50 98-147 182-247 (310)
147 KOG4571 Activating transcripti 69.0 15 0.00033 32.7 6.1 37 97-147 251-287 (294)
148 PF12777 MT: Microtubule-bindi 68.9 31 0.00067 30.5 8.1 67 76-142 231-297 (344)
149 PRK10803 tol-pal system protei 68.1 24 0.00052 30.3 7.1 48 74-121 55-102 (263)
150 PF00261 Tropomyosin: Tropomyo 68.1 71 0.0015 26.7 10.6 13 80-92 141-153 (237)
151 PRK05431 seryl-tRNA synthetase 67.7 87 0.0019 28.7 11.0 12 50-61 10-21 (425)
152 PF12709 Kinetocho_Slk19: Cent 67.5 34 0.00074 25.3 6.8 49 73-121 27-76 (87)
153 PF15619 Lebercilin: Ciliary p 67.1 72 0.0016 26.4 10.1 17 129-145 171-187 (194)
154 KOG2264 Exostosin EXT1L [Signa 67.0 50 0.0011 32.7 9.5 46 95-140 94-139 (907)
155 KOG0996 Structural maintenance 67.0 1.5E+02 0.0032 31.5 13.2 70 49-121 778-847 (1293)
156 COG4372 Uncharacterized protei 66.8 1.2E+02 0.0025 28.7 14.5 89 62-150 126-231 (499)
157 PF15035 Rootletin: Ciliary ro 66.6 72 0.0016 26.2 9.5 57 72-128 66-122 (182)
158 PF10186 Atg14: UV radiation r 66.2 75 0.0016 26.3 16.3 28 71-98 68-95 (302)
159 PF06428 Sec2p: GDP/GTP exchan 66.0 9.8 0.00021 28.6 3.8 72 74-147 9-83 (100)
160 PF02403 Seryl_tRNA_N: Seryl-t 65.8 49 0.0011 24.0 7.8 45 78-122 41-88 (108)
161 PF05266 DUF724: Protein of un 65.7 76 0.0017 26.2 13.8 32 81-112 125-156 (190)
162 PF05812 Herpes_BLRF2: Herpesv 65.7 11 0.00024 29.4 4.1 26 72-97 2-27 (118)
163 PF07558 Shugoshin_N: Shugoshi 65.7 7.1 0.00015 25.3 2.6 33 85-117 12-44 (46)
164 PF10211 Ax_dynein_light: Axon 65.5 75 0.0016 26.0 11.9 16 129-144 163-178 (189)
165 smart00338 BRLZ basic region l 65.2 38 0.00083 22.6 8.1 33 81-113 27-59 (65)
166 PRK04863 mukB cell division pr 65.2 2E+02 0.0044 31.0 14.6 14 56-69 325-338 (1486)
167 PF15070 GOLGA2L5: Putative go 65.0 1.4E+02 0.0031 29.1 14.8 53 70-122 119-195 (617)
168 KOG0999 Microtubule-associated 64.9 91 0.002 30.7 10.8 62 79-147 7-75 (772)
169 KOG4196 bZIP transcription fac 64.8 31 0.00068 27.5 6.5 62 78-147 52-113 (135)
170 KOG0243 Kinesin-like protein [ 64.8 1.2E+02 0.0026 31.6 12.1 62 82-143 450-511 (1041)
171 PF10234 Cluap1: Clusterin-ass 64.6 1E+02 0.0022 27.1 11.1 36 107-142 203-238 (267)
172 PHA02562 46 endonuclease subun 64.4 92 0.002 28.5 10.5 28 72-99 173-200 (562)
173 PF09726 Macoilin: Transmembra 64.3 1.3E+02 0.0027 29.8 11.9 9 48-56 424-432 (697)
174 KOG0999 Microtubule-associated 64.2 1.5E+02 0.0033 29.2 13.2 94 48-145 113-210 (772)
175 KOG0977 Nuclear envelope prote 64.2 1.4E+02 0.0031 28.8 14.0 51 95-145 142-192 (546)
176 PHA03155 hypothetical protein; 64.1 10 0.00022 29.5 3.6 23 75-97 10-32 (115)
177 PF15294 Leu_zip: Leucine zipp 63.8 39 0.00085 29.9 7.6 50 97-146 128-177 (278)
178 KOG2077 JNK/SAPK-associated pr 63.5 64 0.0014 31.9 9.5 88 78-165 299-396 (832)
179 PF08317 Spc7: Spc7 kinetochor 63.5 1E+02 0.0023 27.0 13.6 27 75-101 151-177 (325)
180 PF03962 Mnd1: Mnd1 family; I 63.3 83 0.0018 25.8 12.0 74 73-146 69-152 (188)
181 PRK10803 tol-pal system protei 63.1 65 0.0014 27.6 8.8 47 76-122 43-89 (263)
182 PF03980 Nnf1: Nnf1 ; InterPr 62.6 16 0.00035 26.9 4.4 30 71-100 78-107 (109)
183 PHA03162 hypothetical protein; 62.5 5.8 0.00013 31.6 2.1 27 71-97 11-37 (135)
184 PF04977 DivIC: Septum formati 62.3 32 0.00068 23.1 5.6 29 71-99 22-50 (80)
185 PF05667 DUF812: Protein of un 62.3 77 0.0017 30.7 9.9 56 72-127 327-382 (594)
186 PF14645 Chibby: Chibby family 61.4 28 0.00061 26.7 5.6 7 14-20 9-15 (116)
187 PF07412 Geminin: Geminin; In 61.3 31 0.00068 29.1 6.3 29 87-115 125-153 (200)
188 KOG0933 Structural maintenance 61.3 1.1E+02 0.0023 32.1 10.9 69 77-145 791-859 (1174)
189 PF08232 Striatin: Striatin fa 61.1 64 0.0014 25.1 7.7 45 77-121 15-59 (134)
190 PF04999 FtsL: Cell division p 61.0 58 0.0013 23.2 7.0 40 88-127 36-75 (97)
191 KOG0946 ER-Golgi vesicle-tethe 60.7 55 0.0012 33.4 8.7 45 74-118 672-716 (970)
192 PF06785 UPF0242: Uncharacteri 60.6 55 0.0012 30.2 8.1 27 104-130 137-163 (401)
193 KOG4643 Uncharacterized coiled 60.5 1.3E+02 0.0028 31.5 11.3 53 92-144 507-559 (1195)
194 PF05667 DUF812: Protein of un 60.1 95 0.0021 30.1 10.1 60 88-147 329-388 (594)
195 PF10211 Ax_dynein_light: Axon 59.9 96 0.0021 25.4 10.9 63 75-143 122-184 (189)
196 KOG0946 ER-Golgi vesicle-tethe 59.7 87 0.0019 32.0 9.9 57 72-128 649-706 (970)
197 PF11629 Mst1_SARAH: C termina 59.5 29 0.00063 23.2 4.7 30 111-150 11-40 (49)
198 KOG4797 Transcriptional regula 59.5 24 0.00053 27.5 4.9 27 88-114 68-94 (123)
199 PRK02119 hypothetical protein; 59.4 59 0.0013 22.9 7.5 26 75-100 4-29 (73)
200 PF10473 CENP-F_leu_zip: Leuci 59.3 89 0.0019 24.8 13.8 12 74-85 25-36 (140)
201 KOG4360 Uncharacterized coiled 59.2 1.6E+02 0.0034 28.7 11.1 55 69-123 194-248 (596)
202 PRK02224 chromosome segregatio 58.9 1.9E+02 0.004 28.4 12.2 11 76-86 533-543 (880)
203 PF07716 bZIP_2: Basic region 58.7 28 0.0006 22.7 4.6 25 97-121 28-52 (54)
204 PRK13729 conjugal transfer pil 58.5 49 0.0011 31.4 7.7 29 91-119 80-108 (475)
205 KOG2991 Splicing regulator [RN 58.5 67 0.0014 28.7 8.1 17 98-114 214-230 (330)
206 PF07407 Seadorna_VP6: Seadorn 58.4 44 0.00094 30.8 7.1 27 96-122 34-60 (420)
207 TIGR00634 recN DNA repair prot 58.3 42 0.00091 31.6 7.3 86 47-144 139-224 (563)
208 KOG1103 Predicted coiled-coil 58.2 64 0.0014 30.2 8.2 63 61-123 226-288 (561)
209 TIGR02231 conserved hypothetic 58.2 1.6E+02 0.0034 27.4 11.1 16 129-144 152-167 (525)
210 PF05377 FlaC_arch: Flagella a 58.0 57 0.0012 22.2 6.1 31 75-105 9-39 (55)
211 PRK04406 hypothetical protein; 58.0 65 0.0014 22.8 7.7 27 75-101 6-32 (75)
212 PF13935 Ead_Ea22: Ead/Ea22-li 57.7 80 0.0017 24.5 7.7 11 71-81 79-89 (139)
213 PF08172 CASP_C: CASP C termin 57.7 49 0.0011 28.5 7.1 30 72-101 106-135 (248)
214 PF04340 DUF484: Protein of un 57.7 51 0.0011 27.1 7.0 24 76-99 43-66 (225)
215 PF05557 MAD: Mitotic checkpoi 57.6 1.9E+02 0.0041 28.1 12.0 49 74-122 511-587 (722)
216 KOG4673 Transcription factor T 57.2 1.2E+02 0.0027 30.6 10.3 69 79-147 872-950 (961)
217 KOG4603 TBP-1 interacting prot 56.7 78 0.0017 26.7 7.8 23 77-99 90-112 (201)
218 PF13094 CENP-Q: CENP-Q, a CEN 56.1 96 0.0021 24.2 9.1 45 73-117 41-85 (160)
219 PF08606 Prp19: Prp19/Pso4-lik 56.0 72 0.0016 22.8 6.6 33 92-124 6-38 (70)
220 PF12718 Tropomyosin_1: Tropom 55.8 99 0.0021 24.3 9.0 48 74-121 15-62 (143)
221 COG4467 Regulator of replicati 55.7 66 0.0014 25.0 6.7 43 79-121 7-49 (114)
222 PF13815 Dzip-like_N: Iguana/D 54.8 75 0.0016 23.9 7.0 91 45-141 23-113 (118)
223 PF12808 Mto2_bdg: Micro-tubul 54.6 43 0.00094 22.5 4.9 16 71-86 2-17 (52)
224 KOG0161 Myosin class II heavy 54.4 1.6E+02 0.0036 32.6 11.5 52 91-142 1657-1708(1930)
225 PF05483 SCP-1: Synaptonemal c 54.1 1.6E+02 0.0035 29.6 10.6 76 70-145 605-684 (786)
226 PF15070 GOLGA2L5: Putative go 54.0 2.2E+02 0.0047 27.8 11.5 58 72-129 166-223 (617)
227 TIGR02894 DNA_bind_RsfA transc 53.8 76 0.0016 26.0 7.2 18 105-122 101-118 (161)
228 PF05557 MAD: Mitotic checkpoi 53.6 1.2E+02 0.0026 29.5 9.8 23 124-146 561-583 (722)
229 PF06698 DUF1192: Protein of u 53.6 55 0.0012 22.5 5.4 26 75-100 23-48 (59)
230 PF06785 UPF0242: Uncharacteri 53.5 1.9E+02 0.0041 26.8 11.3 51 69-119 123-173 (401)
231 TIGR00993 3a0901s04IAP86 chlor 52.3 20 0.00043 35.8 4.2 33 56-88 414-446 (763)
232 PF04859 DUF641: Plant protein 52.3 56 0.0012 25.8 6.1 42 75-116 89-130 (131)
233 PF07407 Seadorna_VP6: Seadorn 52.2 87 0.0019 28.9 7.9 56 83-143 35-90 (420)
234 PF01166 TSC22: TSC-22/dip/bun 51.8 31 0.00067 23.9 4.0 15 76-90 24-38 (59)
235 PF09311 Rab5-bind: Rabaptin-l 51.6 8.4 0.00018 31.2 1.4 62 79-147 14-75 (181)
236 COG4026 Uncharacterized protei 51.1 1.7E+02 0.0038 25.7 10.1 24 77-100 139-162 (290)
237 PF13851 GAS: Growth-arrest sp 50.9 1.4E+02 0.0031 24.6 12.3 62 84-145 66-130 (201)
238 KOG1962 B-cell receptor-associ 50.8 72 0.0016 27.3 6.9 41 106-146 163-203 (216)
239 TIGR01005 eps_transp_fam exopo 50.7 2.4E+02 0.0053 27.3 11.9 29 127-155 374-402 (754)
240 KOG0288 WD40 repeat protein Ti 50.7 2.1E+02 0.0045 27.1 10.3 40 78-117 32-71 (459)
241 KOG2629 Peroxisomal membrane a 50.0 1.3E+02 0.0029 27.0 8.6 62 76-147 132-193 (300)
242 PF14282 FlxA: FlxA-like prote 49.8 1E+02 0.0022 22.9 6.9 21 74-94 20-40 (106)
243 PF00261 Tropomyosin: Tropomyo 49.7 1.5E+02 0.0033 24.7 10.6 21 79-99 133-153 (237)
244 PF09728 Taxilin: Myosin-like 49.6 1.9E+02 0.004 25.6 10.2 35 100-134 127-161 (309)
245 PRK09841 cryptic autophosphory 49.4 2.6E+02 0.0057 27.3 11.4 27 128-154 369-395 (726)
246 PF14988 DUF4515: Domain of un 49.2 1.6E+02 0.0034 24.6 12.1 48 95-142 48-98 (206)
247 PF05911 DUF869: Plant protein 49.1 1.7E+02 0.0037 29.4 10.1 50 73-122 92-148 (769)
248 COG2919 Septum formation initi 49.1 1.1E+02 0.0025 23.0 9.1 78 50-136 19-96 (117)
249 smart00787 Spc7 Spc7 kinetocho 48.9 1.9E+02 0.0042 25.6 11.3 75 72-146 178-256 (312)
250 PF06818 Fez1: Fez1; InterPro 48.9 1.7E+02 0.0036 24.8 9.7 69 75-143 12-80 (202)
251 PF08232 Striatin: Striatin fa 48.9 1.3E+02 0.0027 23.5 8.4 53 95-147 12-64 (134)
252 PF15058 Speriolin_N: Sperioli 48.6 52 0.0011 27.9 5.6 35 76-118 8-42 (200)
253 PF11365 DUF3166: Protein of u 48.5 85 0.0018 23.6 6.2 46 76-121 4-49 (96)
254 PF04728 LPP: Lipoprotein leuc 48.3 87 0.0019 21.4 6.9 30 80-109 3-32 (56)
255 PF12709 Kinetocho_Slk19: Cent 48.3 1.1E+02 0.0024 22.7 7.8 44 70-113 39-82 (87)
256 PF14915 CCDC144C: CCDC144C pr 48.2 2.1E+02 0.0045 25.8 10.7 53 67-119 22-81 (305)
257 PF13874 Nup54: Nucleoporin co 48.2 1.3E+02 0.0028 23.3 8.6 64 74-144 52-115 (141)
258 KOG4807 F-actin binding protei 47.9 2.5E+02 0.0055 26.7 11.4 77 71-147 416-537 (593)
259 PF01920 Prefoldin_2: Prefoldi 47.9 71 0.0015 22.5 5.7 33 73-105 62-94 (106)
260 PF12507 HCMV_UL139: Human Cyt 47.5 52 0.0011 25.9 5.1 84 78-163 35-118 (121)
261 KOG4403 Cell surface glycoprot 47.2 2.1E+02 0.0046 27.4 9.9 58 88-145 260-318 (575)
262 PF11932 DUF3450: Protein of u 46.8 1.7E+02 0.0038 24.5 13.6 10 108-117 84-93 (251)
263 KOG4603 TBP-1 interacting prot 46.8 1.1E+02 0.0024 25.8 7.2 31 84-114 83-113 (201)
264 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.7 1.3E+02 0.0028 23.0 10.2 21 102-122 99-119 (132)
265 KOG0963 Transcription factor/C 46.7 3E+02 0.0065 27.2 11.6 48 99-146 247-309 (629)
266 PF05812 Herpes_BLRF2: Herpesv 46.7 32 0.00069 26.9 3.8 25 97-121 6-30 (118)
267 PF05701 WEMBL: Weak chloropla 46.5 2.6E+02 0.0056 26.4 10.7 53 93-145 301-353 (522)
268 PRK10698 phage shock protein P 46.4 1.8E+02 0.0038 24.4 10.3 55 75-129 101-155 (222)
269 PF10168 Nup88: Nuclear pore c 46.2 1.9E+02 0.0042 28.6 10.0 72 71-145 577-648 (717)
270 KOG0250 DNA repair protein RAD 46.2 3.8E+02 0.0082 28.2 13.6 27 72-98 688-714 (1074)
271 TIGR01010 BexC_CtrB_KpsE polys 46.0 2.1E+02 0.0045 25.1 10.5 23 128-150 277-299 (362)
272 PF04899 MbeD_MobD: MbeD/MobD 45.6 1.1E+02 0.0023 21.7 7.3 32 90-121 31-62 (70)
273 PF14915 CCDC144C: CCDC144C pr 45.4 2.3E+02 0.005 25.5 12.9 68 61-128 181-248 (305)
274 KOG4673 Transcription factor T 45.4 1.8E+02 0.0039 29.5 9.4 44 78-121 864-907 (961)
275 KOG1850 Myosin-like coiled-coi 45.2 2.2E+02 0.0048 26.2 9.4 54 93-146 122-175 (391)
276 KOG0976 Rho/Rac1-interacting s 45.1 2.3E+02 0.005 29.4 10.2 48 81-128 93-140 (1265)
277 PHA03155 hypothetical protein; 44.7 31 0.00068 26.8 3.5 23 97-119 11-33 (115)
278 PF15233 SYCE1: Synaptonemal c 44.4 1.6E+02 0.0035 23.5 9.2 45 74-118 7-58 (134)
279 PF11365 DUF3166: Protein of u 44.2 1E+02 0.0022 23.2 6.1 38 101-145 8-45 (96)
280 TIGR01005 eps_transp_fam exopo 44.1 2.5E+02 0.0054 27.2 10.3 59 48-106 163-227 (754)
281 TIGR02977 phageshock_pspA phag 44.0 1.8E+02 0.004 24.0 10.3 57 73-129 99-155 (219)
282 TIGR00414 serS seryl-tRNA synt 43.6 1.5E+02 0.0033 27.0 8.4 45 78-122 42-90 (418)
283 PF09744 Jnk-SapK_ap_N: JNK_SA 43.5 71 0.0015 25.8 5.6 62 83-144 85-147 (158)
284 TIGR03007 pepcterm_ChnLen poly 43.4 2.6E+02 0.0056 25.5 12.1 25 127-151 353-377 (498)
285 KOG4674 Uncharacterized conser 43.4 3.2E+02 0.0069 30.4 11.5 22 75-96 68-89 (1822)
286 PF15397 DUF4618: Domain of un 43.3 2.3E+02 0.005 24.8 9.1 79 63-141 71-154 (258)
287 PHA03162 hypothetical protein; 43.0 33 0.00073 27.4 3.5 22 97-118 16-37 (135)
288 PF05622 HOOK: HOOK protein; 42.8 8.1 0.00018 37.4 0.0 32 70-101 322-353 (713)
289 COG1792 MreC Cell shape-determ 42.7 1.4E+02 0.003 26.1 7.6 39 105-147 70-108 (284)
290 PF05529 Bap31: B-cell recepto 42.5 1.8E+02 0.0038 23.3 9.1 34 109-142 155-188 (192)
291 PRK14127 cell division protein 42.5 1E+02 0.0022 23.6 6.0 26 74-99 31-56 (109)
292 PF09730 BicD: Microtubule-ass 42.5 2.9E+02 0.0062 27.7 10.4 13 75-87 36-48 (717)
293 KOG0994 Extracellular matrix g 42.3 1.4E+02 0.0031 32.0 8.5 63 89-151 1227-1289(1758)
294 PF15254 CCDC14: Coiled-coil d 41.8 3.7E+02 0.0081 27.4 11.1 27 73-99 441-467 (861)
295 PRK02793 phi X174 lysis protei 41.2 1.2E+02 0.0027 21.1 7.3 25 76-100 4-28 (72)
296 TIGR03495 phage_LysB phage lys 41.1 1.8E+02 0.0039 23.0 9.6 61 87-147 19-79 (135)
297 PRK11519 tyrosine kinase; Prov 41.1 3.5E+02 0.0076 26.4 11.4 27 128-154 369-395 (719)
298 PRK11239 hypothetical protein; 41.1 53 0.0011 28.1 4.6 27 76-102 186-212 (215)
299 PF10174 Cast: RIM-binding pro 41.0 3.9E+02 0.0085 26.9 13.6 63 75-144 289-351 (775)
300 PLN02678 seryl-tRNA synthetase 41.0 3.1E+02 0.0067 25.7 10.9 13 50-62 14-26 (448)
301 PF09728 Taxilin: Myosin-like 40.5 2.6E+02 0.0056 24.7 9.4 55 93-147 243-304 (309)
302 KOG4436 Predicted GTPase activ 40.5 50 0.0011 33.6 5.0 74 72-145 828-906 (948)
303 TIGR00998 8a0101 efflux pump m 40.5 2.3E+02 0.0049 24.0 9.4 22 78-99 99-120 (334)
304 cd00632 Prefoldin_beta Prefold 40.2 1.4E+02 0.003 21.7 6.3 26 76-101 66-91 (105)
305 KOG0980 Actin-binding protein 40.2 4.5E+02 0.0097 27.3 12.2 86 52-151 445-530 (980)
306 PF04102 SlyX: SlyX; InterPro 40.1 1.2E+02 0.0026 20.8 7.3 23 78-100 2-24 (69)
307 PRK12704 phosphodiesterase; Pr 40.0 3.3E+02 0.0072 25.8 13.5 29 94-122 124-152 (520)
308 PF09726 Macoilin: Transmembra 39.7 3.9E+02 0.0085 26.5 14.1 23 116-138 630-652 (697)
309 PF07989 Microtub_assoc: Micro 39.6 1.4E+02 0.003 21.2 7.0 53 93-146 6-67 (75)
310 KOG4370 Ral-GTPase effector RL 39.0 99 0.0021 29.4 6.4 42 92-147 411-452 (514)
311 TIGR02231 conserved hypothetic 38.8 3.2E+02 0.007 25.3 11.6 11 20-30 40-50 (525)
312 PF05600 DUF773: Protein of un 38.7 2.8E+02 0.006 26.3 9.4 50 73-122 432-481 (507)
313 KOG1414 Transcriptional activa 38.6 10 0.00022 34.5 -0.1 46 48-93 281-326 (395)
314 PRK10963 hypothetical protein; 38.4 1.1E+02 0.0024 25.5 6.1 25 76-100 40-64 (223)
315 KOG0995 Centromere-associated 38.4 3.9E+02 0.0085 26.2 12.1 37 111-147 290-326 (581)
316 cd07665 BAR_SNX1 The Bin/Amphi 38.3 2.5E+02 0.0055 23.9 11.4 25 70-94 26-50 (234)
317 KOG1003 Actin filament-coating 38.1 2.5E+02 0.0055 23.9 8.6 43 101-143 137-179 (205)
318 COG4026 Uncharacterized protei 38.1 2.8E+02 0.0061 24.4 10.0 10 12-21 38-47 (290)
319 COG5185 HEC1 Protein involved 37.9 2.3E+02 0.0051 27.5 8.7 64 72-145 486-549 (622)
320 PF12329 TMF_DNA_bd: TATA elem 37.4 1.4E+02 0.0031 20.9 7.8 52 71-122 10-61 (74)
321 PF04012 PspA_IM30: PspA/IM30 37.3 2.2E+02 0.0049 23.0 10.1 39 82-120 107-145 (221)
322 PF05700 BCAS2: Breast carcino 37.2 2.4E+02 0.0053 23.4 8.2 27 95-121 176-202 (221)
323 COG1729 Uncharacterized protei 37.2 1E+02 0.0022 27.0 5.9 47 75-122 58-104 (262)
324 PF10779 XhlA: Haemolysin XhlA 37.2 1.4E+02 0.003 20.5 6.6 46 77-122 3-48 (71)
325 PF03980 Nnf1: Nnf1 ; InterPr 37.1 1.6E+02 0.0036 21.4 7.5 12 130-141 95-106 (109)
326 PRK14872 rod shape-determining 37.1 93 0.002 28.2 5.8 41 101-145 57-97 (337)
327 COG1579 Zn-ribbon protein, pos 37.0 2.8E+02 0.006 24.0 12.5 91 50-143 56-156 (239)
328 PRK14127 cell division protein 37.0 1.2E+02 0.0025 23.2 5.6 26 76-101 40-65 (109)
329 PF04340 DUF484: Protein of un 37.0 2.4E+02 0.0051 23.2 9.1 42 95-136 41-82 (225)
330 PF01486 K-box: K-box region; 36.7 1.6E+02 0.0035 21.2 6.1 28 91-118 72-99 (100)
331 KOG1029 Endocytic adaptor prot 36.6 2.6E+02 0.0057 28.8 9.2 13 9-21 262-274 (1118)
332 PF14645 Chibby: Chibby family 36.6 1.4E+02 0.003 22.9 5.9 20 81-100 79-98 (116)
333 COG1792 MreC Cell shape-determ 36.5 1.4E+02 0.0031 26.0 6.7 45 71-119 64-108 (284)
334 PF14988 DUF4515: Domain of un 36.3 2.5E+02 0.0055 23.4 10.7 47 96-142 151-197 (206)
335 PRK00846 hypothetical protein; 35.4 1.7E+02 0.0037 21.1 7.2 23 77-99 10-32 (77)
336 PF07851 TMPIT: TMPIT-like pro 35.4 3.4E+02 0.0074 24.6 11.2 74 73-146 4-85 (330)
337 PRK00409 recombination and DNA 35.4 4.5E+02 0.0098 26.2 10.7 69 73-141 520-589 (782)
338 PF09789 DUF2353: Uncharacteri 35.4 2.8E+02 0.006 25.1 8.4 14 60-73 37-50 (319)
339 COG5509 Uncharacterized small 34.7 75 0.0016 22.3 3.8 24 74-97 26-49 (65)
340 PRK04325 hypothetical protein; 34.5 1.6E+02 0.0035 20.6 7.0 23 75-97 4-26 (74)
341 KOG1265 Phospholipase C [Lipid 34.5 5.7E+02 0.012 26.9 16.7 71 49-119 1025-1100(1189)
342 KOG2189 Vacuolar H+-ATPase V0 34.4 3.6E+02 0.0079 27.5 9.7 27 65-91 48-74 (829)
343 COG3132 Uncharacterized protei 34.3 55 0.0012 27.8 3.6 22 77-98 189-210 (215)
344 PF13851 GAS: Growth-arrest sp 34.1 2.7E+02 0.0058 23.0 13.3 52 50-101 70-121 (201)
345 PRK14160 heat shock protein Gr 34.1 2E+02 0.0043 24.4 7.0 44 75-118 56-99 (211)
346 PF06810 Phage_GP20: Phage min 33.8 2.4E+02 0.0053 22.4 9.2 9 111-119 54-62 (155)
347 PF02403 Seryl_tRNA_N: Seryl-t 33.7 1.8E+02 0.0039 20.9 11.9 62 77-138 33-97 (108)
348 smart00340 HALZ homeobox assoc 33.7 1.2E+02 0.0025 19.9 4.3 16 130-145 20-35 (44)
349 KOG4001 Axonemal dynein light 33.6 3.2E+02 0.007 23.7 8.6 59 62-120 170-254 (259)
350 PHA02557 22 prohead core prote 33.4 2.7E+02 0.0058 24.7 7.9 41 90-130 144-184 (271)
351 PRK13923 putative spore coat p 33.2 1.3E+02 0.0028 24.8 5.6 36 72-107 110-145 (170)
352 PF06419 COG6: Conserved oligo 33.0 3.5E+02 0.0077 26.0 9.3 61 73-133 45-105 (618)
353 PF15369 KIAA1328: Uncharacter 32.9 3.8E+02 0.0083 24.4 9.3 38 77-114 23-60 (328)
354 PF13118 DUF3972: Protein of u 32.8 1.6E+02 0.0034 23.3 5.8 40 98-144 82-121 (126)
355 PF10212 TTKRSYEDQ: Predicted 32.7 3.6E+02 0.0079 26.0 9.2 48 78-125 432-479 (518)
356 KOG1029 Endocytic adaptor prot 32.7 3.6E+02 0.0079 27.9 9.4 41 77-117 455-495 (1118)
357 PF11544 Spc42p: Spindle pole 32.6 1.9E+02 0.0042 20.9 7.8 51 87-144 5-55 (76)
358 COG1340 Uncharacterized archae 32.6 3.7E+02 0.008 24.1 13.0 100 47-146 21-124 (294)
359 PF08912 Rho_Binding: Rho Bind 32.4 1.9E+02 0.004 20.6 6.8 33 78-110 1-33 (69)
360 KOG4348 Adaptor protein CMS/SE 32.3 4.7E+02 0.01 25.3 9.9 59 71-146 567-625 (627)
361 TIGR02209 ftsL_broad cell divi 32.2 1.7E+02 0.0036 20.1 6.5 24 74-97 32-55 (85)
362 KOG2129 Uncharacterized conser 32.0 1.7E+02 0.0036 28.0 6.7 39 76-114 46-84 (552)
363 KOG2391 Vacuolar sorting prote 32.0 4.1E+02 0.0089 24.5 13.5 35 83-117 242-276 (365)
364 COG4372 Uncharacterized protei 32.0 4.5E+02 0.0098 25.0 12.7 83 57-149 204-286 (499)
365 KOG3335 Predicted coiled-coil 31.5 1.5E+02 0.0033 24.7 5.8 33 68-100 101-133 (181)
366 PF10805 DUF2730: Protein of u 31.4 2.2E+02 0.0047 21.1 9.5 48 73-120 49-98 (106)
367 KOG4797 Transcriptional regula 31.2 2.6E+02 0.0056 21.9 8.8 27 81-107 68-94 (123)
368 PF11932 DUF3450: Protein of u 31.1 3.2E+02 0.0068 22.9 13.6 35 77-111 60-94 (251)
369 PF06008 Laminin_I: Laminin Do 31.0 3.2E+02 0.007 23.0 11.8 26 75-100 47-72 (264)
370 PRK04863 mukB cell division pr 31.0 7.2E+02 0.016 27.0 13.7 27 94-120 376-402 (1486)
371 PRK03992 proteasome-activating 30.9 2.2E+02 0.0048 25.5 7.2 19 79-97 14-32 (389)
372 PF02388 FemAB: FemAB family; 30.7 3.3E+02 0.0072 24.6 8.4 24 73-96 242-265 (406)
373 PF05791 Bacillus_HBL: Bacillu 30.6 2.9E+02 0.0063 22.3 9.9 77 65-144 102-178 (184)
374 PRK10963 hypothetical protein; 30.5 3.2E+02 0.0068 22.7 8.4 37 96-132 39-75 (223)
375 PF13870 DUF4201: Domain of un 30.5 2.7E+02 0.0059 22.0 11.7 88 60-147 20-130 (177)
376 PLN02678 seryl-tRNA synthetase 30.4 2.8E+02 0.0061 25.9 8.0 18 81-98 48-65 (448)
377 PTZ00454 26S protease regulato 30.2 1.9E+02 0.0041 26.3 6.7 20 78-97 27-46 (398)
378 KOG0996 Structural maintenance 30.2 5.1E+02 0.011 27.8 10.2 63 77-139 511-573 (1293)
379 PRK03992 proteasome-activating 30.1 2.1E+02 0.0045 25.7 6.9 42 77-118 5-46 (389)
380 PF13094 CENP-Q: CENP-Q, a CEN 29.9 2.7E+02 0.0058 21.7 6.8 37 60-96 49-85 (160)
381 COG3879 Uncharacterized protei 29.8 2.3E+02 0.0051 24.7 6.8 17 80-96 64-80 (247)
382 KOG0971 Microtubule-associated 29.7 6.9E+02 0.015 26.4 12.1 41 61-101 398-438 (1243)
383 KOG4593 Mitotic checkpoint pro 29.7 5.3E+02 0.011 25.9 9.9 70 71-144 249-321 (716)
384 PF10168 Nup88: Nuclear pore c 29.6 5.7E+02 0.012 25.4 14.6 47 76-122 561-607 (717)
385 PF05335 DUF745: Protein of un 29.5 3.3E+02 0.0071 22.6 12.2 33 69-101 63-95 (188)
386 TIGR01069 mutS2 MutS2 family p 29.0 5.9E+02 0.013 25.4 10.7 69 73-141 515-584 (771)
387 COG1382 GimC Prefoldin, chaper 28.9 2.8E+02 0.0061 21.6 7.0 14 75-88 72-85 (119)
388 PF04201 TPD52: Tumour protein 28.7 2.2E+02 0.0049 23.3 6.2 26 78-103 34-59 (162)
389 COG5293 Predicted ATPase [Gene 28.6 5.5E+02 0.012 24.9 13.7 84 54-138 329-422 (591)
390 PHA03011 hypothetical protein; 28.6 2.8E+02 0.0061 21.5 7.3 55 82-143 59-113 (120)
391 PHA03161 hypothetical protein; 28.6 3.2E+02 0.007 22.2 9.4 59 74-142 55-113 (150)
392 PF14916 CCDC92: Coiled-coil d 28.6 1.6E+02 0.0035 20.3 4.6 17 75-91 5-21 (60)
393 PF08537 NBP1: Fungal Nap bind 28.4 1.7E+02 0.0037 26.5 6.0 22 54-75 124-145 (323)
394 KOG2264 Exostosin EXT1L [Signa 28.3 2E+02 0.0044 28.6 6.8 45 73-117 93-137 (907)
395 COG2919 Septum formation initi 28.3 2.6E+02 0.0057 21.0 6.6 9 105-113 61-69 (117)
396 PF10498 IFT57: Intra-flagella 28.2 3.7E+02 0.008 24.4 8.2 70 71-141 278-347 (359)
397 PLN02939 transferase, transfer 27.9 6.1E+02 0.013 26.4 10.3 24 100-123 225-248 (977)
398 PF15112 DUF4559: Domain of un 27.9 3.1E+02 0.0066 24.8 7.4 98 50-147 138-289 (307)
399 PF15450 DUF4631: Domain of un 27.8 5.7E+02 0.012 24.8 9.8 95 72-166 411-514 (531)
400 PF09738 DUF2051: Double stran 27.8 4.4E+02 0.0095 23.5 12.5 21 72-92 83-103 (302)
401 cd07429 Cby_like Chibby, a nuc 27.6 1E+02 0.0023 23.6 3.9 23 78-100 77-99 (108)
402 COG3028 Uncharacterized protei 27.6 3.7E+02 0.008 22.6 10.8 94 61-161 72-169 (187)
403 PF11853 DUF3373: Protein of u 27.5 56 0.0012 31.1 2.9 28 73-100 31-58 (489)
404 KOG4677 Golgi integral membran 27.4 5.7E+02 0.012 24.7 12.8 93 55-147 170-277 (554)
405 PF05010 TACC: Transforming ac 27.4 3.8E+02 0.0082 22.6 11.3 49 70-121 41-89 (207)
406 PRK10929 putative mechanosensi 26.9 6.9E+02 0.015 26.3 10.7 18 100-117 179-196 (1109)
407 PRK00295 hypothetical protein; 26.7 2.2E+02 0.0047 19.6 7.0 17 78-94 3-19 (68)
408 TIGR02132 phaR_Bmeg polyhydrox 26.7 3.9E+02 0.0084 22.5 10.7 50 74-123 80-129 (189)
409 PRK10869 recombination and rep 26.7 3.4E+02 0.0075 25.7 8.0 13 47-59 135-147 (553)
410 PF11460 DUF3007: Protein of u 26.6 1.9E+02 0.0042 22.1 5.2 39 93-139 65-103 (104)
411 KOG2391 Vacuolar sorting prote 26.6 5.2E+02 0.011 23.9 12.8 75 57-131 225-320 (365)
412 KOG3433 Protein involved in me 26.3 4.1E+02 0.0088 22.6 9.2 29 71-99 79-107 (203)
413 KOG0971 Microtubule-associated 26.3 2.6E+02 0.0056 29.3 7.3 43 77-119 1009-1051(1243)
414 PF09006 Surfac_D-trimer: Lung 26.2 2E+02 0.0043 19.0 4.6 18 77-94 3-20 (46)
415 PF07334 IFP_35_N: Interferon- 26.0 1.3E+02 0.0027 21.8 3.9 12 107-118 6-17 (76)
416 PRK14140 heat shock protein Gr 26.0 3.9E+02 0.0084 22.2 8.4 22 75-96 39-60 (191)
417 COG5185 HEC1 Protein involved 26.0 6.1E+02 0.013 24.8 9.3 40 57-96 313-360 (622)
418 KOG0804 Cytoplasmic Zn-finger 25.9 6E+02 0.013 24.4 9.2 64 78-141 380-447 (493)
419 PF05483 SCP-1: Synaptonemal c 25.8 7.1E+02 0.015 25.3 14.1 71 69-146 583-653 (786)
420 KOG0288 WD40 repeat protein Ti 25.7 5.9E+02 0.013 24.2 11.0 62 60-121 30-101 (459)
421 PF15254 CCDC14: Coiled-coil d 25.6 7.5E+02 0.016 25.4 11.0 16 82-97 429-444 (861)
422 PF14077 WD40_alt: Alternative 25.6 89 0.0019 20.8 2.8 19 74-92 19-37 (48)
423 PF11382 DUF3186: Protein of u 25.6 2E+02 0.0044 25.2 5.9 26 75-100 34-59 (308)
424 cd07429 Cby_like Chibby, a nuc 25.2 1.8E+02 0.004 22.2 4.9 18 103-120 81-98 (108)
425 PRK13182 racA polar chromosome 25.0 3.7E+02 0.008 21.9 6.9 15 108-122 125-139 (175)
426 PF09789 DUF2353: Uncharacteri 24.9 5.2E+02 0.011 23.3 8.8 76 75-150 88-175 (319)
427 PRK15396 murein lipoprotein; P 24.7 2.7E+02 0.0059 20.0 7.3 18 77-94 29-46 (78)
428 KOG2129 Uncharacterized conser 24.6 6.3E+02 0.014 24.2 10.7 28 129-157 253-280 (552)
429 PF09744 Jnk-SapK_ap_N: JNK_SA 24.4 3.8E+02 0.0082 21.6 11.9 39 79-117 95-133 (158)
430 PF04880 NUDE_C: NUDE protein, 24.4 1.5E+02 0.0033 24.2 4.6 13 133-145 35-47 (166)
431 PF04899 MbeD_MobD: MbeD/MobD 24.3 2.6E+02 0.0057 19.7 9.5 33 91-123 25-57 (70)
432 PF14523 Syntaxin_2: Syntaxin- 24.3 2.6E+02 0.0056 19.6 10.9 72 74-145 11-87 (102)
433 PF07889 DUF1664: Protein of u 24.2 3.5E+02 0.0076 21.1 8.7 38 105-142 58-95 (126)
434 KOG2991 Splicing regulator [RN 24.2 5.3E+02 0.011 23.2 12.5 15 7-21 9-23 (330)
435 PF13514 AAA_27: AAA domain 24.2 7.9E+02 0.017 25.2 11.1 46 83-128 892-937 (1111)
436 PF10212 TTKRSYEDQ: Predicted 24.1 6.4E+02 0.014 24.4 9.2 57 84-143 459-515 (518)
437 PRK13923 putative spore coat p 23.9 4.1E+02 0.0088 21.9 7.0 48 93-147 110-157 (170)
438 KOG1853 LIS1-interacting prote 23.9 5.4E+02 0.012 23.1 13.2 85 59-143 77-171 (333)
439 KOG3156 Uncharacterized membra 23.8 4.4E+02 0.0096 22.7 7.3 14 132-145 177-190 (220)
440 KOG4460 Nuclear pore complex, 23.8 7.4E+02 0.016 24.7 12.2 91 66-158 595-696 (741)
441 PF08826 DMPK_coil: DMPK coile 23.7 2.5E+02 0.0055 19.3 7.4 12 131-142 41-52 (61)
442 PF10481 CENP-F_N: Cenp-F N-te 23.6 5.5E+02 0.012 23.2 13.1 18 124-141 97-114 (307)
443 TIGR03319 YmdA_YtgF conserved 23.4 6.4E+02 0.014 23.9 13.5 8 115-122 139-146 (514)
444 PF08006 DUF1700: Protein of u 23.3 1.7E+02 0.0036 23.2 4.6 37 69-107 1-37 (181)
445 PRK11020 hypothetical protein; 23.3 3.7E+02 0.008 21.1 7.1 21 85-105 3-23 (118)
446 TIGR00763 lon ATP-dependent pr 23.2 4E+02 0.0086 26.3 7.9 19 126-144 261-279 (775)
447 PHA03011 hypothetical protein; 23.2 3.6E+02 0.0078 20.9 7.7 21 100-120 98-118 (120)
448 PRK00106 hypothetical protein; 23.2 6.8E+02 0.015 24.1 13.6 44 94-138 139-182 (535)
449 KOG0561 bHLH transcription fac 23.0 3.5E+02 0.0076 24.8 6.9 25 97-121 108-132 (373)
450 PF13600 DUF4140: N-terminal d 23.0 2.4E+02 0.0053 20.1 5.0 16 15-30 32-47 (104)
451 PRK10636 putative ABC transpor 22.9 6.8E+02 0.015 24.0 10.0 48 74-121 564-618 (638)
452 KOG0483 Transcription factor H 22.5 1.7E+02 0.0037 24.5 4.6 34 86-119 111-144 (198)
453 KOG1899 LAR transmembrane tyro 22.2 6.6E+02 0.014 25.4 9.0 34 70-103 164-197 (861)
454 PF01576 Myosin_tail_1: Myosin 22.2 29 0.00064 34.7 0.0 67 57-123 586-652 (859)
455 KOG2077 JNK/SAPK-associated pr 21.8 3.1E+02 0.0068 27.3 6.7 50 77-126 326-375 (832)
456 PF08286 Spc24: Spc24 subunit 21.8 30 0.00066 26.0 0.0 17 105-121 24-40 (118)
457 COG4985 ABC-type phosphate tra 21.8 4.3E+02 0.0093 23.4 7.0 13 108-120 221-233 (289)
458 PF13093 FTA4: Kinetochore com 21.7 2.8E+02 0.006 23.3 5.7 16 131-146 193-208 (213)
459 KOG0243 Kinesin-like protein [ 21.6 9.7E+02 0.021 25.3 12.2 53 71-123 446-498 (1041)
460 TIGR00606 rad50 rad50. This fa 21.6 9.6E+02 0.021 25.2 15.7 37 57-93 841-877 (1311)
461 PF13514 AAA_27: AAA domain 21.5 7.8E+02 0.017 25.3 9.8 15 152-166 976-990 (1111)
462 KOG4687 Uncharacterized coiled 21.5 6.2E+02 0.014 23.0 8.3 14 75-88 11-24 (389)
463 PF15397 DUF4618: Domain of un 21.4 5.6E+02 0.012 22.5 14.3 32 77-108 78-109 (258)
464 COG4238 Murein lipoprotein [Ce 21.3 3.3E+02 0.0072 19.8 6.6 44 75-118 27-70 (78)
465 PF07334 IFP_35_N: Interferon- 21.3 2.1E+02 0.0046 20.6 4.3 15 84-98 4-18 (76)
466 PRK11546 zraP zinc resistance 21.3 4.3E+02 0.0094 21.1 7.5 12 106-117 94-105 (143)
467 PF12795 MscS_porin: Mechanose 21.2 4.8E+02 0.01 21.6 10.7 86 72-157 126-220 (240)
468 PLN02320 seryl-tRNA synthetase 21.2 7.3E+02 0.016 23.7 9.7 16 106-121 135-150 (502)
469 PF08286 Spc24: Spc24 subunit 21.1 34 0.00073 25.7 0.1 25 75-99 15-39 (118)
470 PF13758 Prefoldin_3: Prefoldi 21.1 87 0.0019 23.7 2.3 20 123-142 6-25 (99)
471 PRK11530 hypothetical protein; 20.9 2.3E+02 0.005 23.7 5.0 31 80-110 24-54 (183)
472 PF04129 Vps52: Vps52 / Sac2 f 20.7 7E+02 0.015 23.4 11.2 37 71-107 26-62 (508)
473 PRK00736 hypothetical protein; 20.6 3E+02 0.0064 19.0 7.0 14 78-91 3-16 (68)
474 PF02173 pKID: pKID domain; I 20.6 73 0.0016 20.6 1.6 19 47-65 5-23 (41)
475 PF08227 DASH_Hsk3: DASH compl 20.6 2.6E+02 0.0056 18.2 4.9 31 80-110 2-32 (45)
476 PF13863 DUF4200: Domain of un 20.6 3.5E+02 0.0076 19.8 9.3 44 56-99 64-107 (126)
477 cd07624 BAR_SNX7_30 The Bin/Am 20.6 4.2E+02 0.0091 21.5 6.5 33 71-103 19-51 (200)
478 PF02994 Transposase_22: L1 tr 20.5 3.8E+02 0.0082 24.2 6.7 47 75-121 139-185 (370)
479 PF07851 TMPIT: TMPIT-like pro 20.4 5.5E+02 0.012 23.3 7.7 54 91-147 1-54 (330)
480 KOG0964 Structural maintenance 20.4 1E+03 0.023 25.2 14.2 110 54-164 399-512 (1200)
481 PRK11281 hypothetical protein; 20.3 1E+03 0.022 25.1 10.7 106 51-163 159-268 (1113)
482 TIGR01242 26Sp45 26S proteasom 20.3 2.8E+02 0.006 24.3 5.7 40 75-114 1-40 (364)
483 PF07111 HCR: Alpha helical co 20.3 9.1E+02 0.02 24.5 14.2 106 40-151 290-395 (739)
484 PF03962 Mnd1: Mnd1 family; I 20.2 4.8E+02 0.01 21.3 9.4 79 75-163 64-142 (188)
485 PF09763 Sec3_C: Exocyst compl 20.2 8E+02 0.017 23.7 13.1 90 50-141 2-94 (701)
486 PRK03947 prefoldin subunit alp 20.2 3.9E+02 0.0085 20.2 6.4 46 69-114 2-47 (140)
487 PF11382 DUF3186: Protein of u 20.2 3.8E+02 0.0083 23.5 6.5 43 75-117 34-76 (308)
488 PRK15178 Vi polysaccharide exp 20.1 6.8E+02 0.015 23.5 8.4 68 72-139 285-361 (434)
489 PF13600 DUF4140: N-terminal d 20.1 3E+02 0.0064 19.7 5.0 34 88-121 71-104 (104)
490 PF10198 Ada3: Histone acetylt 20.1 4.3E+02 0.0092 20.6 7.5 50 91-140 37-89 (131)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.49 E-value=1.9e-13 Score=93.79 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
.|+|+.+|++.||+||++||.||+.|+.+||.+|..|..+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999999988887777665
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.34 E-value=8.8e-12 Score=85.36 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
+.|+.+|++.||+||+++|.||+.||.+||.+|..|..+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999999999999999999999999999999999998886
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.15 E-value=2.9e-10 Score=75.82 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
.|+++.||. .||.+|++||.||+.|+.+|+..|..|..+|..|..+|..|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478899999 9999999999999999999999999999999999998888765
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.05 E-value=3.3e-09 Score=90.90 Aligned_cols=75 Identities=27% Similarity=0.273 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
-++|-.||+|+||..|+-+|.||+..++++|..|..|..||..|..+-..|...+..|..+|.+|.++|..+.++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 478888999999999999999999999999999999999999999999999999999999999999888866654
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.85 E-value=1.4e-08 Score=94.78 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
-||..|||+||+||..||.||+.|+.-||.+++.|..||..|..+-..|.++...|.+||..|+
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3566689999999999999999999999999999998888776666666666666666666554
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.61 E-value=8.9e-08 Score=87.96 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 47 RELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 47 ~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
.+.+-||+||+|+|.+||+-||-||+.||+.||.+|..--+||.+|..++..|+.+|..|-.+-..|...
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999998888777765555433
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.55 E-value=3e-07 Score=80.76 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 48 ELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 48 ~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
+.--||.-|+++|||.|+--|.+|+.|+.=||.+|..|+.+|..|-++|..|..-|
T Consensus 287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 34678888999999999999999999999999999999999999988888776543
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.87 E-value=2.9e-07 Score=67.39 Aligned_cols=60 Identities=30% Similarity=0.439 Sum_probs=47.5
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
+.+...+-|.+||.+.||.+|+.+|-||+.++.+||..+..|..+...|..++..+..+.
T Consensus 22 t~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 22 TEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999999999999999888776666555555444433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.39 E-value=0.00068 Score=59.01 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=50.5
Q ss_pred hHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 50 EAKKLRR-VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 50 D~Kr~KR-ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+..|+.| -+.||+.|.+||.||+.+|..||.+|..|..+|..|...+..|. ..-.++++++..
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~-------~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK-------EQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5566666 47999999999999999999999999999999998888777554 334556666543
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.84 E-value=0.0074 Score=53.20 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=35.9
Q ss_pred chhhhhhHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 44 TEDRELEAKKLRRVLASRQY-SQKYRLKQLHYIMQLETEVKALQAEV 89 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReS-A~RSR~RK~~yi~eLE~kV~~Lq~En 89 (168)
+.....++|+.+|+-.+|.. |.|.|.||+.-.++|+.+...|+..|
T Consensus 218 ~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN 264 (294)
T KOG4571|consen 218 AHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRN 264 (294)
T ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888887666666 99999999999999999887666543
No 11
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.71 E-value=0.0086 Score=45.52 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.-|.+||.++..|-.+...|...+..+.++|..|+.||..|+.+|..+.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999998876
No 12
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.60 E-value=0.011 Score=45.22 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
-+.+||.++..|-.+...|...+..+-++|..|..||..|+.+|..+.+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999999999999999999999999998744
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.20 E-value=0.075 Score=45.94 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 59 ASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 59 aNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
+|=++|+|||.+.++-.++...+|..|+.||..|..+|..|+.+...|+
T Consensus 201 rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999888888777776665554444
No 14
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.20 E-value=0.091 Score=41.68 Aligned_cols=68 Identities=34% Similarity=0.427 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 47 RELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 47 ~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
..+--|-.||-|+||=.|+--|.|..+.-.+||.+-..|..++..|. .++..+..|-..++.+...|.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~-------~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK-------EENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999988888877666665554444 444445555555665555543
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.12 E-value=0.29 Score=38.07 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 66 KYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 66 RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.++.|=..+-++|..++..|..++..|...+..|..+...+..+...+..+...+.....-...-....+.|+++|+...
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777777777777777777777777777776666666667778888888888776
Q ss_pred HH
Q 035677 146 IM 147 (168)
Q Consensus 146 ~~ 147 (168)
++
T Consensus 125 ~~ 126 (151)
T PF11559_consen 125 QQ 126 (151)
T ss_pred HH
Confidence 54
No 16
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=96.02 E-value=0.027 Score=43.37 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
-+++||.++..|-.+...|...+..+-.+|..|+.||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3688999999999999999999999999999999999999999988
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.96 E-value=0.38 Score=41.98 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=72.4
Q ss_pred cchhhhhhHHHHHHHHHhhHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 43 ETEDRELEAKKLRRVLASRQY--SQKYRLKQLHY-IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 43 ~~~~~~~D~Kr~KRilaNReS--A~RSR~RK~~y-i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+.-...+|-||+|--.+-.-+ -.+.|+-++.| |-||+.+-..|+.||..|...-..|..++..|.++-..|++.|..
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 455577899999876654333 23456667766 679999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHH
Q 035677 120 FSGELTFKEAQYE 132 (168)
Q Consensus 120 l~q~~~lkda~~e 132 (168)
+.++++.....+|
T Consensus 144 ~~~~~~~~~~v~e 156 (292)
T KOG4005|consen 144 LKQQQQHNTRVIE 156 (292)
T ss_pred hHHHHHHhhHHHh
Confidence 9998888776554
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.82 E-value=0.11 Score=36.70 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
.||..|..|+..+..+..++...+..+..|..|+...-.+|. .....+..|+.|++.|+.-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~-------~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLG-------DAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666666666666666555444444 4444667777777766643
No 19
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.78 E-value=0.2 Score=35.35 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..++-+.+++...+.++..|..+-+.........-.+|..|+..+.+|.+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766555555555555555555555555444
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.00 E-value=0.76 Score=32.65 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-++.||.+|+.+-..++.|..++..|..++..|..+|..|+....-|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467777777776666666666555555555555555555544444333
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.95 E-value=2 Score=37.09 Aligned_cols=98 Identities=23% Similarity=0.201 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHhhh
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYA---------DCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l---------~~~~~~L~~EN~~Lk~rL~~l 120 (168)
-++-++.+.+-.+.+.+.-.-+..-+++|+.+|..++.+...++.++... +.++..|..|-..++.++.+|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777788888888888899999999999999999999999988765 457788888888889999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 121 SGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 121 ~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+.+..=-+-..+.|.+|+.-|+-....
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887666666677777777777665543
No 22
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.61 E-value=0.32 Score=40.76 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.-|.||+..=..|..||+.|...|..++..+..|..++..|+.++.++.+-.+... +|++|+..||..+..
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34778888888899999999999999999999999999999999999875555443 456666667766543
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.95 E-value=0.73 Score=38.61 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 035677 89 VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRE 137 (168)
Q Consensus 89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~E 137 (168)
.++|...+.........|..+|..|+.+|..+..+...-++.++.++..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555566677777666666555433333344444333
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.35 E-value=1.7 Score=31.68 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
-++.||.+|+.---.++-|.-+|..|..++..|..++..++
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777765554444444444444444444444444433
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=1.9 Score=31.10 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 035677 75 IMQLETEVKA 84 (168)
Q Consensus 75 i~eLE~kV~~ 84 (168)
++.||.+|++
T Consensus 6 ~ekLE~Kiqq 15 (79)
T COG3074 6 FEKLEAKVQQ 15 (79)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 26
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.15 E-value=2.4 Score=35.44 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQ----NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMY 148 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~----~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~ 148 (168)
.|...||..+..|+.+...+..+|..+... -.....+...|..+-..+...-.--++-...|+.||..||.-...+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999998877542 2334455567777777777766666778889999999999887764
Q ss_pred Hh
Q 035677 149 NQ 150 (168)
Q Consensus 149 ~q 150 (168)
.+
T Consensus 216 ~~ 217 (221)
T PF05700_consen 216 KE 217 (221)
T ss_pred hc
Confidence 44
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.95 E-value=0.83 Score=32.45 Aligned_cols=11 Identities=64% Similarity=0.779 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 035677 132 EELKRERQILK 142 (168)
Q Consensus 132 e~L~~Ev~rLk 142 (168)
+.|..|.++|+
T Consensus 42 ~~L~~en~~L~ 52 (72)
T PF06005_consen 42 EELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.94 E-value=2.8 Score=34.12 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
|.+|+..+..|+.++..+...|..
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333
No 29
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.93 E-value=0.77 Score=33.41 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
++|..++..||.....|..+|.....+|..|..||.-|..=|..|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999999999999999887654
No 30
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.78 E-value=2.1 Score=36.58 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
.-.+|.|++.+...|..|-.....+|..+.++...|...-..++..-............++..|+.||.++|.-
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999999999999999999999988888888777777776677777999999999999887
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=1.4 Score=42.82 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.-|..++.+|..|+.||+.|...+..+.....+|..+-..++.++. ....++-..+++..+|.+|+.-.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888887777777777666665554 34445555566666666665544
No 32
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.51 E-value=0.99 Score=31.71 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
|+.|-.....|..||..|..++..+..+...|...|..=+.|+.+|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666655555555555555555544
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.36 E-value=0.87 Score=31.66 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..|.+||.++..++.-+..|+..|..-+.+...|..+...|..+|.++..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999999999999999999998874
No 34
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.22 E-value=2.5 Score=30.18 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNS--------LLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~--------~L~~EN~~Lk~rL~~l~ 121 (168)
+-|.|..+..|..||-.|.-+|-+|++... .+..+|-+||..+.+|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999988876544 34455556655554444
No 35
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.12 E-value=2.5 Score=41.96 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA-QYEELKRERQILKQLCI 146 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda-~~e~L~~Ev~rLk~~~~ 146 (168)
+.+|..++..++.||+.|..++..+..+...-..| .++-.|-.......++-.+ -.-.|++|++|||.++.
T Consensus 136 ~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E-~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 136 IEDLMARLESTEKENSSLKYELHVLSKELEIRNEE-REYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555444333222 3443333333333333322 25679999999999875
No 36
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.10 E-value=1.3 Score=31.31 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..|.+||.++..++.-+.+|+.-|..-+.+...|..+-..|..+|.++..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46889999999999999999999988888888888888888888877654
No 37
>PRK00295 hypothetical protein; Provisional
Probab=92.04 E-value=1.2 Score=31.06 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
|.+||.++..++.-+..|+..|..-+.+...|..+-..|..+|.++.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999988888888888888888887765
No 38
>PRK02119 hypothetical protein; Provisional
Probab=91.91 E-value=1.2 Score=31.61 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.-|.+||.++..++.-+.+|+.-|..-+++...|..+...|..+|.++.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578889999888888888888888888888888888888888887765
No 39
>PRK00736 hypothetical protein; Provisional
Probab=91.65 E-value=1.6 Score=30.49 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.|.+||.++..++.-+..|+..|..-+.+...|..+-..|..||.++.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999998888888888888888888887754
No 40
>PRK04325 hypothetical protein; Provisional
Probab=91.57 E-value=1.6 Score=31.01 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
|.+||.++..++.-+..|+.-|..-+.+...|..+-..|..||.++.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888888888888888887765
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.55 E-value=5.3 Score=30.93 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 107 RAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYN 149 (168)
Q Consensus 107 ~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~ 149 (168)
..+-.+|..|...+-+-.-=|.=..++|+..|.-||.+|..|-
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444334455668999999999999998743
No 42
>PRK04406 hypothetical protein; Provisional
Probab=91.53 E-value=1.6 Score=31.21 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
..|.+||.++..++.-+..|+..|..-+.+...|..+-..|..+|.++.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578888888888888888888888888888888888888888877654
No 43
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=91.47 E-value=0.42 Score=46.07 Aligned_cols=62 Identities=32% Similarity=0.387 Sum_probs=49.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 54 LRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 54 ~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+||-=+||.+|++-|-||+--|..||..|..|+.+-..|..+ ...+..+-.+++++|..|-+
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~ 553 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQ 553 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344446899999999999999999999999999888765443 33344677888899888875
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.32 E-value=3.5 Score=28.97 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+..||.+|..|=.-...|..+...|..+...+..|+..|..+..... ..+++=|.||+.+-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar----------~rvEamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR----------QKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhc
Confidence 34566666655555555555544454444555555554444443332 24455577777663
No 45
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.60 E-value=3.3 Score=33.90 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=44.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLET---EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 73 ~yi~eLE~---kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.|+..|.. ....++.||..|..++..|+..+..|..||..|..++..+.. -+++|-.=+.|-|.++.
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e-------DY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE-------DYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 44444443 356667777777777777777777777777777777766665 56666666666665543
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.57 E-value=6.4 Score=38.88 Aligned_cols=93 Identities=29% Similarity=0.272 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQL-----HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~-----~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
.|-|-.|-.++ |..|-..|+-+. .-.+.||.+...|..|..++..+=..+-++|..|..||-.|..++..|.+.
T Consensus 41 ~elk~~~~~~~-~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 41 NELKQLRQELS-NVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34555444444 344444444332 235666777777777777777777778889999999999999999988874
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 035677 124 LTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 124 ~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.+++|.++-||.||.-=..
T Consensus 120 ----QvefE~~Khei~rl~Ee~~ 138 (717)
T PF09730_consen 120 ----QVEFEGLKHEIKRLEEEIE 138 (717)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 3677777777777765443
No 47
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.09 E-value=1 Score=29.33 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 85 LQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 85 Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|+.+-..|....+.|..++..|..||..|+..+..|..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555443
No 48
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.06 E-value=8.4 Score=34.01 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+.+++.++..|+.|...+..++..++.+...|..|-..|...+..+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666665555543
No 49
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.00 E-value=2.7 Score=39.54 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|..|-.+..++..++..+..+|..|..||..|+.|...+.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444444555556666666666777777777776665554
No 50
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.79 E-value=4.6 Score=31.95 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRI--KYADCQNSLLRAENGSMKQKLSAFSGE-LTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l--~~l~~~~~~L~~EN~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rLk~~ 144 (168)
.-+.+|...+..|..+...|...+ ..+......|..|+..|..+|..|... ..+....-+.+..+...++..
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655543 456677788888999999999887764 333444555555555544443
No 51
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.79 E-value=6.3 Score=28.86 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.+++.+.|.+=+++--.|.-+..-.++|+.+|+.|....+.|..++......+..|..-|.++..+|....
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777666666666679999999999999999999999999999999999999999998644
No 52
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=89.69 E-value=6.6 Score=28.99 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADC------QNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~------~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
.+..++..|..+|..|+. +-+...+||-.|+..+..+..-. .....|.+-.||..|+.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 334444555555554443 22445566666666666555432 44566666667766654
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.46 E-value=2 Score=34.94 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.+..+..|+.++..|..++..+..+......-+..|+..+.+|.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 54
>PRK00846 hypothetical protein; Provisional
Probab=89.29 E-value=3.2 Score=30.01 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+.|.+||.++...+.-+..|...|...+.....|..+-..|..+|.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999988888888888888888888888788888887765
No 55
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.59 E-value=2.4 Score=30.65 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
=|..+|..|..+|..|..+...+++....|..||..||.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555553
No 56
>PRK11637 AmiB activator; Provisional
Probab=88.25 E-value=11 Score=34.04 Aligned_cols=7 Identities=14% Similarity=-0.092 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 035677 140 ILKQLCI 146 (168)
Q Consensus 140 rLk~~~~ 146 (168)
+++.+|.
T Consensus 129 rlra~Y~ 135 (428)
T PRK11637 129 QLDAAFR 135 (428)
T ss_pred HHHHHHH
Confidence 3444443
No 57
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.15 E-value=3.2 Score=39.11 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
-.++||.++..|+.|...++.+...+++....|..||..|+.++.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999888888888888888888888888888888844
No 58
>PRK11637 AmiB activator; Provisional
Probab=87.96 E-value=15 Score=33.13 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
+.+|+.++..++.+...+..+|..++.+...+..+-..++.+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.70 E-value=11 Score=29.13 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSM 113 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~L 113 (168)
+|.++..|+.++..|..+-+.+..+...|..+|.++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 60
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=87.58 E-value=2.5 Score=31.23 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.++..|+.-.......-.++..++..|..|...|+.++.- .....-..++|-.|..|+.||+..+
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444455566777778888888888888753 2233445578999999999999987
No 61
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=87.32 E-value=3.9 Score=37.31 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+.++|.+++.-..-|+.|-. +..-|.=+-.-||.-|..+..++....-+++.+.+|+.|+|..+-.
T Consensus 121 v~EveekykkaMvsnaQLDN-------EKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~ 186 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDN-------EKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSV 186 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcc-------cccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766665543 3333444555667777777777777778999999999999987654
No 62
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.28 E-value=8.4 Score=32.39 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
.-|..+|..|+.+|..+....+-+......|.+++..|+-+|-.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 34667777777777777777777777788887788888777733
No 63
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.17 E-value=16 Score=32.25 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
..+-+.+||.+...|..|...+..+...+..+-...-.+.+.+...+..+..+..--.+.++.+...+++|+.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555554444444444444444555555555555444444455555555555543
No 64
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=87.16 E-value=8.2 Score=28.88 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.+..++.+...+..+|..+..++..+...|.+|-..+..+......... ...+..++..++.-+..
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888887776555554 55556666665555543
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.75 E-value=11 Score=35.68 Aligned_cols=64 Identities=25% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA-FSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~-l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+++.++..|..+|..| ..+|..|+.....+.++++. +.....=-+...+.|+.|++.|+.+..+
T Consensus 70 ~~r~~~~~l~~~N~~l-------~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 70 ELRKRLAKLISENEAL-------KAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 44444455555555555543 3222222233566777777777766654
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.64 E-value=15 Score=31.27 Aligned_cols=57 Identities=21% Similarity=0.093 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.+..++......+..+..+...|+..+....-...--+...+.|+.|+..|+..+..
T Consensus 86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333333444455555556666555554444444455677778888777777643
No 67
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.56 E-value=15 Score=32.69 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=49.2
Q ss_pred chhhhhhHHHHHHHHHhhH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 44 TEDRELEAKKLRRVLASRQ-----YSQKYRLKQ-LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNRe-----SA~RSR~RK-~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
.....+++|-.|=|++|-+ ++.-..+-- +.-+++||..+..|+.++..-...+..+.+.+..|..+-..|+..|
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999899998742 333333333 3346666777777777666666666666777777777777777666
Q ss_pred h
Q 035677 118 S 118 (168)
Q Consensus 118 ~ 118 (168)
.
T Consensus 164 ~ 164 (302)
T PF09738_consen 164 K 164 (302)
T ss_pred H
Confidence 5
No 68
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.55 E-value=7.1 Score=34.92 Aligned_cols=55 Identities=25% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
..+.|++.|..+|..+++.+..+..||.+|.+.|.+... -+..|..|+.-|+-.|
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske-------~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE-------SQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 445678888888899999999999999999999876543 3344666666666554
No 69
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.50 E-value=17 Score=30.05 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE 128 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd 128 (168)
.|-+-++..|...-|-+-.+...+.+...+|.++..-..+...+...| .+|..+|..|..++..-+
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i--------------~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEI--------------KELEMKILELQRQAAKLK 151 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 456666667777888888888888888888888776644444444433 344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQLCIM 147 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~~~ 147 (168)
...++..+||.+|+.-+..
T Consensus 152 ~~ke~~~~ei~~lks~~~~ 170 (190)
T PF05266_consen 152 EKKEAKDKEISRLKSEAEA 170 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555566555555444
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.38 E-value=32 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=23.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGS 112 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~ 112 (168)
++.-..........-...+++|+..+...+.++..|..+...+......|..|+..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~ 210 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444333333333333333333
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.03 E-value=5.4 Score=43.06 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE-LTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+..+.-|+.++.++.+++.....+...|..++...|+|-+.|... ...--..++.|..||.+|+.-.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 334445555666777788888888888888888888888776654 3333355666666666665543
No 72
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.62 E-value=3 Score=32.04 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
|-.+|-.||.-...|+.++....+++..|++||..|-+=|+.|...
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 4567888888899999999999999999999999999988776543
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.15 E-value=23 Score=30.19 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF----KEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l----kda~~e~L~~Ev~rLk~~~~~ 147 (168)
.+..+..|+..+...+..+..+...|...|..|..+|..+...... .+.....+..|+..||.-...
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 3455666777777777788888888888888888888776654333 345566778888888776654
No 74
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.69 E-value=18 Score=31.82 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.-+.+++..+..++.+...|-.+|..++.....+..++.+++..|..+..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555443
No 75
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=84.28 E-value=11 Score=28.25 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 64 SQKYRLKQL-HYIMQLETEVKALQAEVAIM--SPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 64 A~RSR~RK~-~yi~eLE~kV~~Lq~En~~L--~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|.+++.-+. .-+++.+.++..++.+...| +..+..|+-.-..++.+-..|..+|..+..
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334443333 33445566666666666666 566666666666677777777777777654
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.98 E-value=13 Score=36.00 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
+.|+.+++.+-..+......|..++...+.++..|..+|..|+.++.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888888888888888887664
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.98 E-value=37 Score=31.74 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=53.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
++++-+-++=+.-.++.-....-...|+..+..++.++..+..+|.....+...+...+..+..+|..|+.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666665555555555556667778888888888888888888888877777777777777777777666554
No 78
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=83.79 E-value=12 Score=25.71 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
|++|...|+.|...+..|+..|..+..+-.....|-.---+||
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555555544444433333333333
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.78 E-value=32 Score=30.87 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
++|...+..|+.++..|..++......+..|..+|..|+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666655555555555555555555553
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.58 E-value=20 Score=28.41 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+.+|+.+..+++....++...+..+......+..+....+.++.++..
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 137 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDE 137 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333333444444444333
No 81
>PRK09039 hypothetical protein; Validated
Probab=83.51 E-value=15 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
..+..+.++..++|..|..+...|+.+...|...|.+.+..
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555555554444444444433
No 82
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.27 E-value=39 Score=32.54 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 62 QYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 62 eSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+-+.+-+.-=++-...|+.++..|+.++..|...+......+..|..++..+......
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~ 203 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEE 203 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555555555555554444433
No 83
>PRK09039 hypothetical protein; Validated
Probab=83.16 E-value=34 Score=30.58 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
+++.++..|..+........+....+-..|..+-..|+.+|.+|+......+.........|..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555554444443333333333333
No 84
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.87 E-value=8.6 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.|...|..++.+...|..+-.+||..+..|.. +|.+|+-|-++||.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E-------EN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLE-------ENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666777777766665 666677777777766654
No 85
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.50 E-value=0.054 Score=49.04 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=54.7
Q ss_pred hhhhhhHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHH
Q 035677 45 EDRELEAKKLRRVLASRQYSQK---YRLKQLHYIMQLETEVKALQ-AEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 45 ~~~~~D~Kr~KRilaNReSA~R---SR~RK~~yi~eLE~kV~~Lq-~En~~L~~~l~~l~~~~~~L~ 107 (168)
...+.+.|++.|...|+..|.+ +|.|+..|.+.|..+|..|+ .++..+..+|..|+.+...|.
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 3456789999999999999999 99999999999999999999 888888888887776666654
No 86
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.47 E-value=23 Score=33.38 Aligned_cols=76 Identities=21% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH---------
Q 035677 70 KQLHYIMQLETEVKALQA--------------EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF--------- 126 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~--------------En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l--------- 126 (168)
=|.+|-+++|+++..-+. +...+.-++..|.+++..--.||..|-+.+.+-.+-..-
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn 469 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN 469 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 377888999888754432 333444555566666665556777777666543332111
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 035677 127 --KEAQYEELKRERQILKQLC 145 (168)
Q Consensus 127 --kda~~e~L~~Ev~rLk~~~ 145 (168)
..-++..|.+||.|||.+.
T Consensus 470 aHNQELnnRLaaEItrLRtll 490 (593)
T KOG4807|consen 470 AHNQELNNRLAAEITRLRTLL 490 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 1134667788888888775
No 87
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.43 E-value=15 Score=35.92 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE---AQYEELKRERQILKQL 144 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd---a~~e~L~~Ev~rLk~~ 144 (168)
|..|..++..|..+...+...+..+...+.....++..+...|.++.....-+. .++..|..+|+.||.-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666777777777777777777777777777777777777777777777666666 6777777788777754
No 88
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.85 E-value=22 Score=28.24 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE-----AQYEELKRERQILKQLCI 146 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd-----a~~e~L~~Ev~rLk~~~~ 146 (168)
.+...+...+.....+...+..+..+...+...|..|+.+...+.-...+.| ...+.++.+|..|+..+.
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777777888888889999999999999988877777766 334556666666665543
No 89
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=81.83 E-value=2.7 Score=34.41 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQY 131 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~ 131 (168)
++|+|.+.++-=..|+-|..+| .+...|+.++--||..+..|.++..+++-+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999998888888888888 3455677777777777777777776665543
No 90
>PF15294 Leu_zip: Leucine zipper
Probab=81.77 E-value=5.4 Score=35.18 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|...+..|+.||..|..++..++.++....-|...|..+|..+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999999999999998888888888888877665
No 91
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.20 E-value=16 Score=29.32 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYAD-CQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~-~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
++|.....+.+..++|..++..+. .+...|+.++..|+..+..|.+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555554432 3444555555555555554443
No 92
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=80.47 E-value=43 Score=32.72 Aligned_cols=80 Identities=24% Similarity=0.252 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 67 YRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 67 SR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
+++--.+.-.+|+.+|..|+.++..+..+|..++.+...-.++-.....++........|-+|.......+...|+.-..
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445678999999999999999999999998888777777777778888887777778887777777776666554
No 93
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=80.44 E-value=11 Score=33.66 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 68 RLKQLH----YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 68 R~RK~~----yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|.||+. ||=.+|.+++.-..|.-.|..+++.|++++..++..-.+.+..|..|..
T Consensus 55 rvrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 55 RVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456665 4455788888888888889999999988888888888888887777654
No 94
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.83 E-value=9.5 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|++||.++..+... |.. ++.||.+|+..+..+.+
T Consensus 2 i~elEn~~~~~~~~-------i~t-------vk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 2 IDELENELPRIESS-------INT-------VKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHH
Confidence 45566665555544 333 33455555555555544
No 95
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.72 E-value=24 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 035677 92 MSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQI 140 (168)
Q Consensus 92 L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~r 140 (168)
|...+...++++..|.+++..|+.+|..-....--+.+..+.+..|..+
T Consensus 327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444456666666666666666666655555555555555555444
No 96
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.49 E-value=11 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 130 QYEELKRERQILKQL 144 (168)
Q Consensus 130 ~~e~L~~Ev~rLk~~ 144 (168)
+++.|.+||..|+..
T Consensus 27 E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 27 ENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHh
Confidence 355555555555544
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.39 E-value=43 Score=32.31 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.-+.+.+..+..|+++...+...+..++.+...|..||.-|...|..+.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344445555555555555555566666566666666655555554433
No 98
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.33 E-value=30 Score=27.48 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~ 93 (168)
.+++++..+..+..+...+.
T Consensus 96 el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=79.04 E-value=12 Score=32.55 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 105 LLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.|..||..||.++..+..+... ..+.++.|-+|||.+...
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 3556666666666655332222 234488888888888765
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.84 E-value=17 Score=28.66 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
|.+|..++..|..++..|..++..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555444
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.76 E-value=30 Score=27.22 Aligned_cols=11 Identities=0% Similarity=0.341 Sum_probs=4.6
Q ss_pred HHHHHHhhhhh
Q 035677 112 SMKQKLSAFSG 122 (168)
Q Consensus 112 ~Lk~rL~~l~q 122 (168)
.|.-+|+.|+.
T Consensus 77 ~l~rriq~LEe 87 (143)
T PF12718_consen 77 QLNRRIQLLEE 87 (143)
T ss_pred HHHhhHHHHHH
Confidence 34444444443
No 102
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.64 E-value=28 Score=26.78 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 035677 128 EAQYEELKRER 138 (168)
Q Consensus 128 da~~e~L~~Ev 138 (168)
++....++.|+
T Consensus 83 ~l~~r~~k~~~ 93 (107)
T PF09304_consen 83 ELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33344444443
No 103
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.36 E-value=17 Score=34.95 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|..+..+...++.||+.|-.+|..+++....++.|+.+|...|.+..+
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556677788888888888888888888888888888876554
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.22 E-value=22 Score=31.79 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
-|.+|+.+++.+-.||..|...+.........|.+|..+|+.+-..... +......|+..||
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~-------mL~EaQEElk~lR 303 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA-------MLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 3455556666666666666666666666666677777777766655442 3334445555554
No 105
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.92 E-value=4.5 Score=28.04 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
|+..|..+|..|...+..|..||.-||+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455566666667777777777777777654
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.81 E-value=94 Score=32.41 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 64 SQKYRLKQLHYIMQLETEV-KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 64 A~RSR~RK~~yi~eLE~kV-~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.++...+.-.-|.+++.+. +.+..+..++..++..|..+...|....+.|+..+..+...+.-..-.-+..+.++-.|+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444445555555555 555555555556666666666666666666666666655544444444445566666665
Q ss_pred HHH
Q 035677 143 QLC 145 (168)
Q Consensus 143 ~~~ 145 (168)
...
T Consensus 450 k~i 452 (1074)
T KOG0250|consen 450 KKI 452 (1074)
T ss_pred HHH
Confidence 543
No 107
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.53 E-value=1.5 Score=32.69 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
.||+.|...+..|..++..|..++..|..+...+......|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 5899999999999999999999998888777777777777666553
No 108
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=77.09 E-value=51 Score=29.03 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=62.0
Q ss_pred cchhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 43 ETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIM-QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 43 ~~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~-eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+++.++.|.|=.-+-|-.+.---+.-+|-+...- +|......-.---.+|..+++.|++.......--.=||.++.+|.
T Consensus 6 ea~~~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV 85 (277)
T PF15030_consen 6 EAEASEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLV 85 (277)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHH
Confidence 3444556777555555666655555555554433 333332222222334556667777666666666677999999999
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 035677 122 GELTFKEAQYEELKRERQI 140 (168)
Q Consensus 122 q~~~lkda~~e~L~~Ev~r 140 (168)
+.++=+.-+...|-.|+.|
T Consensus 86 ~kc~eRn~Li~~llqel~R 104 (277)
T PF15030_consen 86 QKCRERNRLITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888655
No 109
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.93 E-value=14 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.|-.++..++++...|..+-.+||..+..|.. +|-+|+-|-++||....
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~E-------EN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLE-------ENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666665554 45555555555555544
No 110
>PF15058 Speriolin_N: Speriolin N terminus
Probab=76.88 E-value=4.7 Score=34.01 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 99 ADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 99 l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
+.++...|..||.+||.++.-+.....+|.++.|+-..=+
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~ 49 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPS 49 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455556777888888888888877777777666554433
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.82 E-value=42 Score=30.03 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
++..|..||..|......++.....|..+-..=-.++..|+.+..-.-...+.|..|+.|+|.-.-
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333222344444555444444566777777777776543
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.78 E-value=34 Score=30.04 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMS----PRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~----~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
..+...|+.++..|+.-..++. .++..+..+...+..+...++..|..+..+..-.+...+.++.++..|..
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554333322 23444555555555555555555555555544444444444444444443
No 113
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=76.73 E-value=27 Score=25.58 Aligned_cols=75 Identities=19% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hhhhhhhHHHHH
Q 035677 56 RVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS-AFSGELTFKEAQ 130 (168)
Q Consensus 56 RilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~-~l~q~~~lkda~ 130 (168)
+|=..+......=..|..-+..||.++..|..|.+.-..+.-.+++....|..|+..|+..+. +-.-...+++.+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E 82 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344456666666777888889999999999999999999999999999999999999998886 344445555533
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.58 E-value=15 Score=24.52 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhhh
Q 035677 99 ADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 99 l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
|+.....|..+|..|+..+..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 115
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.49 E-value=29 Score=31.06 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 035677 134 LKRERQILKQLC 145 (168)
Q Consensus 134 L~~Ev~rLk~~~ 145 (168)
..+||+.||++.
T Consensus 122 ARkEIkQLkQvi 133 (305)
T PF15290_consen 122 ARKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHHH
Confidence 456777777665
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.18 E-value=44 Score=27.74 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
...+..+..++.++..|..++..+..+|....+....+...+...+..|....+...-.....+.+..++...+..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555522222222222333344455544444
No 117
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=75.97 E-value=37 Score=26.88 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+.....+......+..+..+|..+..+...-......|+..+......+.-++...+.|+.|-+.||.-+
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 3334444555566666677777776666555666677888888888878888888888888888888765
No 118
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=75.86 E-value=48 Score=28.03 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 102 QNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 102 ~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.+..+..||..|+.++..|..+.. ..+.+++|-++||.+...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 444566666666666666554322 335678888888887765
No 119
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.83 E-value=41 Score=33.01 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 035677 58 LASRQYSQKYRLKQL-HYIMQLETEVKALQAEVAIMSPRIKYADCQNS---LLRAENGSMKQKLSAFSGELTFKEAQYEE 133 (168)
Q Consensus 58 laNReSA~RSR~RK~-~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~---~L~~EN~~Lk~rL~~l~q~~~lkda~~e~ 133 (168)
.-++..+...+..++ ..+.+|+..+..|+.++..|..++..+..... ....|-..+.-++..|+-...-+.-.-+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555554443 34666666666666666666666665543322 22233344556777788888888888999
Q ss_pred HHHHHHHHHHHHHH
Q 035677 134 LKRERQILKQLCIM 147 (168)
Q Consensus 134 L~~Ev~rLk~~~~~ 147 (168)
|++++.+|+.+..+
T Consensus 500 L~~~l~~l~k~~~l 513 (652)
T COG2433 500 LERKLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876654
No 120
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.81 E-value=16 Score=37.80 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
.|+.++.....++..|..++..|.+++..|-.....+....-..|+.++.+..|...|..
T Consensus 312 dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 312 DMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS 371 (1195)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence 333333333444444444445555555555444444444455566677777777766666
No 121
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.35 E-value=29 Score=25.34 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
.|+..+...-..|.+|+-+...|..+|..|.+..
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333333
No 122
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=75.34 E-value=3.9 Score=39.41 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..|.++|..+..+|..|+.||..||.||..|..
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 357789999999999999999999999998876
No 123
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.04 E-value=24 Score=24.38 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
....+..++..++.+...+..||..|+.++..|....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~ 61 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHE 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3344444555555555556666666666666665533
No 124
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.98 E-value=59 Score=31.10 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=4.8
Q ss_pred hhhhhhhhhhc
Q 035677 157 LVNNLNQRFNK 167 (168)
Q Consensus 157 ~~~~~~~~~~~ 167 (168)
....+|.-|++
T Consensus 507 le~~~~~~f~~ 517 (650)
T TIGR03185 507 LEEEITKSFKK 517 (650)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.95 E-value=47 Score=27.53 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHH--------------HHHhHHHHHHHHHHHHHHhhh
Q 035677 63 YSQKYRLKQLH-YIMQLETEVKALQAEVAIMSP-------RIKYA--------------DCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 63 SA~RSR~RK~~-yi~eLE~kV~~Lq~En~~L~~-------~l~~l--------------~~~~~~L~~EN~~Lk~rL~~l 120 (168)
||+..+...++ -+.+|..++..|..||..|.. .|..+ ..+...|.......+.+..++
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555555543 456666666666666665542 12111 122223333333333444445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 121 SGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 121 ~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.....=.+.....+..++++|+.+..
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666677777776653
No 126
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.56 E-value=51 Score=36.30 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=51.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
...-.+++++++.-=+..+...|+++..|+.|+.+|...+..+.+....+..|..++..++..+..
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 334677888888888888888888888888888888888888887777777777777777766443
No 127
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.25 E-value=20 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 94 PRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 94 ~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
.++..++.+...+..+|..|+.++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445555555555554
No 128
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.23 E-value=29 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.|.+||.++..=+.-..+|+..|...+.....+...-..|-.++..+.
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 477888888777777777777777666555555555555555555544
No 129
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.08 E-value=23 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 100 DCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 100 ~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
++-|..|..-|..|+.+|..... .|++|..|+++|+.-.
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~-------~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARK-------ANEALQEDLQKLTQDW 111 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34555666666666666655543 5666666666665544
No 130
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.88 E-value=11 Score=32.42 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 63 YSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 63 SA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.+||.|-|.. ..|||.++..+..++..|..+|.. |.++|-.|=.++.-|.
T Consensus 85 tsQRDRFR~R--n~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 85 TSQRDRFRQR--NAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4666666643 566776666666666555555554 4456666655655443
No 131
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.83 E-value=19 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
++..++.++..|..+|..|+.++..|.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333344444444444444443
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.60 E-value=44 Score=26.59 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=56.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 53 KLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 53 r~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
-+--...|.+.+-+--+-+++.|..|+.++..+-.+...|...+..+..+...|.-+-...+.++..|...
T Consensus 32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445668888888888888999999999988888888888888888888888877777777777777654
No 133
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.40 E-value=29 Score=24.43 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
|.+-..++..|+.|...|+...-.+......|+..+.++-..+..+.. -.+.+..++..|+..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~-------~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK-------KLEELEKELESLEERL 70 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 344556667777777777666555555555555555555555544442 3445555666665543
No 134
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.05 E-value=11 Score=32.87 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhh
Q 035677 81 EVKALQAEVAIMSPRIKYADCQ----NSLLRAENGSMKQKLSA 119 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~----~~~L~~EN~~Lk~rL~~ 119 (168)
.+..|..||..|..++..+..+ ...|..||..|+.-|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455667777777776555222 22388889888886653
No 135
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.99 E-value=34 Score=32.40 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
-++.|+.+++.|..||..|..-+..|...+..|..+-
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566677788888888888777766665555554444
No 136
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.73 E-value=83 Score=31.41 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH---HHH
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSP---RIKYADCQNSLLRAENGSMKQKLSAFSGELTFK---EAQ 130 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~---~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lk---da~ 130 (168)
+|.-++.||.-+.|-+..+-++-+ ..|-+.-.-|.. .++.|+-+...|++|-.+||-++.+|+.+..=. --.
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr--~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~ 206 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKR--NKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRL 206 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH--hhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHh
Confidence 567788899888887776644332 222222222222 236788899999999999999999998554222 223
Q ss_pred HHHHHHHHHHHHH
Q 035677 131 YEELKRERQILKQ 143 (168)
Q Consensus 131 ~e~L~~Ev~rLk~ 143 (168)
.|.|.-||.+++.
T Consensus 207 se~l~qevn~~kv 219 (861)
T KOG1899|consen 207 SENLMQEVNQSKV 219 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 4455566665543
No 137
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=72.37 E-value=35 Score=28.84 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 67 YRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 67 SR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+-.....++.+|..+-..|+.|+..|..++..++ .+..||..|+.-|..
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~~ 111 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELE----QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 3334444555555555555555555555544442 577888888876653
No 138
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.68 E-value=35 Score=24.60 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.++.+-.+...+..+...+..+-..++.....-..|...++..+-.|+.... ..-+..+.||.|||.-.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666777788888877776422 23345588999998754
No 139
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=71.56 E-value=37 Score=33.23 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..+|..|..+......+-.+|+.+|.+- ..++.+++|+..||.+
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHh
Confidence 3444455555555555555555555444 4689999999888875
No 140
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.55 E-value=64 Score=27.57 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
.+...|..++.....+...+..+..+|+.+.+.+.. +++.|.+|-++|+.-
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~-------EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD-------EYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444443 555666665555543
No 141
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.59 E-value=24 Score=26.39 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQ 102 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~ 102 (168)
....+.+.+++.++..|+.+|..|..+|..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455667777777777777777777777777653
No 142
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=70.49 E-value=30 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 89 VAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
..++..++.+|+.++..|+.+..+|+..|
T Consensus 217 ~~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 217 EDEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333
No 143
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.36 E-value=38 Score=28.86 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
|+.+...++.++..|.........+...|..+..++...+..|.....-++...+.|..++..-+..
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555556666667777777777788888888888888887666654
No 144
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.18 E-value=48 Score=25.57 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 55 RRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 55 KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
.|=+..|+.....-.++..-++.|+..+..|+.++..+..++..++.....|..+...+...+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666666666666666555555444444444443333
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.27 E-value=61 Score=28.51 Aligned_cols=47 Identities=11% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.+++.+|..|..++.++..++..++.++..+..+-..|+..|..+..
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666655543
No 146
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.09 E-value=88 Score=28.17 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhh-h---------------hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 98 YADCQNSLLRAENGSMKQKLSA-F---------------SGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~-l---------------~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.|+.+-..|.+++..|..+|.. . .....-..+....|..||.|||.....
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999988863 1 111233445667899999999988765
No 147
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=68.95 E-value=15 Score=32.69 Aligned_cols=37 Identities=27% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..+.-++..|...|.+||.++.+|+ +||++||.+..-
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~le--------------rEI~ylKqli~e 287 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELE--------------REIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 4456677788899999999987665 677777777643
No 148
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.90 E-value=31 Score=30.49 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.+.+..+...+.+...+..+|..|+.++.....+...|...+............+...|..|..|-.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 3444555555555566666666666666666666666766666666555555567777777765544
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.12 E-value=24 Score=30.27 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-+.+|..++..|+.|+..|..+|..++++...+.....+|-..|..+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999888888888888888877776543
No 150
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.11 E-value=71 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 035677 80 TEVKALQAEVAIM 92 (168)
Q Consensus 80 ~kV~~Lq~En~~L 92 (168)
.++..|+.+...+
T Consensus 141 ~ki~eLE~el~~~ 153 (237)
T PF00261_consen 141 SKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 151
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.74 E-value=87 Score=28.73 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhh
Q 035677 50 EAKKLRRVLASR 61 (168)
Q Consensus 50 D~Kr~KRilaNR 61 (168)
+|..++..+++|
T Consensus 10 n~~~v~~~l~~R 21 (425)
T PRK05431 10 NPEAVKEALAKR 21 (425)
T ss_pred CHHHHHHHHHhc
Confidence 566666777777
No 152
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=67.52 E-value=34 Score=25.35 Aligned_cols=49 Identities=31% Similarity=0.361 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAE-VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~E-n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.|=..=|.+|..|... -.....+|..|+.++..|..||..|+.+|....
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556655421 123445556666666666666666666665544
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.08 E-value=72 Score=26.43 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQLC 145 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~ 145 (168)
.....|..||++|....
T Consensus 171 ~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666665543
No 154
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=66.98 E-value=50 Score=32.67 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQI 140 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~r 140 (168)
++..++.....|.+|-.++..+++++.+...-+..+-++|+.||+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3333444444444555555555555555444444455556666543
No 155
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.97 E-value=1.5e+02 Score=31.50 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.+..++.+-+++..-+.+--.-.+. +++..|..|.....+|+.++..+.-....+..+-..|+.+|..++
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~---~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLH---ELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELE 847 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555656665555544333332 233444444444444444444444444444444444444444433
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.82 E-value=1.2e+02 Score=28.73 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHhh-----------hhhhh---
Q 035677 62 QYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK---QKLSA-----------FSGEL--- 124 (168)
Q Consensus 62 eSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk---~rL~~-----------l~q~~--- 124 (168)
..|++-..+-++.+..+..+...|+.+...|..+-..+..+...|-++-++|. .+|.+ ++|+.
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667777777778888877777777777666666666666655 23222 22221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 125 TFKEAQYEELKRERQILKQLCIMYNQ 150 (168)
Q Consensus 125 ~lkda~~e~L~~Ev~rLk~~~~~~~q 150 (168)
.-+.---+.+.+|..++-...++-.|
T Consensus 206 a~r~~a~q~r~~ela~r~aa~Qq~~q 231 (499)
T COG4372 206 ATRANAAQARTEELARRAAAAQQTAQ 231 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222345677888888777765333
No 157
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.60 E-value=72 Score=26.22 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE 128 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd 128 (168)
...++|=..+...|..-|+-|..++......|..|..++..|...+..+..+...++
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556667777778888888888888888888888888888887777777666
No 158
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.17 E-value=75 Score=26.31 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
++.-+..|...+..+..++.....++..
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 159
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.01 E-value=9.8 Score=28.63 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN---GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN---~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
-..++|..+..+..|...|++.| +++-|.+...+. ..+..+...|..+..=.++..+.|..++..||.+...
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777776643 233333333332 3445555566666666667788888888889887643
No 160
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=65.84 E-value=49 Score=24.01 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADC---QNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~---~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|..++..|+.+-..++.+|..+.. +...|..+-..|+.++..++.
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666665544 456666677777777766665
No 161
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.74 E-value=76 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGS 112 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~ 112 (168)
.-..++.+...|...|..|+.+...+..++..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555454444444433333
No 162
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=65.73 E-value=11 Score=29.38 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
-.-++||..++..|+.||..|..+|.
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888877764
No 163
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=65.66 E-value=7.1 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 85 LQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 85 Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
|-..|+.++.+|..++.....|..||..|+.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334556666666666666777777777777654
No 164
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.52 E-value=75 Score=26.04 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQL 144 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~ 144 (168)
........||+.||..
T Consensus 163 ~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 163 EEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666554
No 165
>smart00338 BRLZ basic region leucin zipper.
Probab=65.19 E-value=38 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSM 113 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~L 113 (168)
.+..|+.+...|..+...|..+...|..|+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333333333333333333
No 166
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.18 E-value=2e+02 Score=30.97 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=6.0
Q ss_pred HHHHhhHHHHHHHH
Q 035677 56 RVLASRQYSQKYRL 69 (168)
Q Consensus 56 RilaNReSA~RSR~ 69 (168)
.+-...+.|.+...
T Consensus 325 kLEkQaEkA~kyle 338 (1486)
T PRK04863 325 DLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.99 E-value=1.4e+02 Score=29.07 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 70 KQLHYIMQLETEVKALQAE------------------------VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~E------------------------n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.+...|.+||..+..++.. |..|..++..++.-+..|..+|.+|...|.+-.+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 5666777888777666544 4566777778888888888888777666655433
No 168
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.92 E-value=91 Score=30.73 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQN-------SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~-------~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+..|..|+.++..|..++....++. ..|-.|...|++++..|+ ++++.++-|++.++.+..+
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle-------aeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE-------AEYDLARTELDQTKEALGQ 75 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665443322 344557778888888776 5899999999999988876
No 169
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.83 E-value=31 Score=27.50 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
|-.+-..|.+-....+=++.-++ +...|..++.+|.++|..|.. ++..+..|++.++..+..
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~-------e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKE-------ENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33344445444444444444443 345688888888888888876 788888888888888765
No 170
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.80 E-value=1.2e+02 Score=31.56 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
+..|..+...+..+|..++..+....-.+..|+.++..+......+.-.-+.++.|++.++.
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555444444444455555554444444444444444444444433
No 171
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.58 E-value=1e+02 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 107 RAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 107 ~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
..|-.-.+.||.+|....=-.=.++|.|++|.+.|=
T Consensus 203 k~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 203 KQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 334444455666655442222246888888865543
No 172
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.36 E-value=92 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+.|+.+++.++..|..+...+..++..+
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~ 200 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTY 200 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555533
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.27 E-value=1.3e+02 Score=29.82 Aligned_cols=9 Identities=56% Similarity=0.730 Sum_probs=5.7
Q ss_pred hhhHHHHHH
Q 035677 48 ELEAKKLRR 56 (168)
Q Consensus 48 ~~D~Kr~KR 56 (168)
+.|-||+|.
T Consensus 424 E~dvkkLra 432 (697)
T PF09726_consen 424 EADVKKLRA 432 (697)
T ss_pred HHHHHHHHH
Confidence 346777765
No 174
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.25 E-value=1.5e+02 Score=29.23 Aligned_cols=94 Identities=26% Similarity=0.216 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 48 ELEAKKLRRVLASRQYSQKYRLKQLHY----IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 48 ~~D~Kr~KRilaNReSA~RSR~RK~~y----i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
..|.|..+-.+.|-.+-.-+=..+-.- -..+|.+-..|..|..++.-+-..|-.+|..|..||-.|...+..|.+.
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 356777776766644332222222111 1234555556666666666666667778888888888888888877763
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 035677 124 LTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 124 ~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.+++|-|+-||.||---+
T Consensus 193 ----QVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 193 ----QVEYEGLKHEIKRLEEET 210 (772)
T ss_pred ----hhhhhHHHHHHHHHHHHH
Confidence 456666666666665433
No 175
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.17 E-value=1.4e+02 Score=28.83 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.+..+..-...+.+|..-++.++..|+.+..--.+++..|..++.++|...
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334445556677888888888888888887777788888888888888644
No 176
>PHA03155 hypothetical protein; Provisional
Probab=64.07 E-value=10 Score=29.49 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
++||+.++..|+.||..|..+|.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988888888774
No 177
>PF15294 Leu_zip: Leucine zipper
Probab=63.76 E-value=39 Score=29.86 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
..+..+...|..||..||.||..++..+-..--+...|...+.-|+....
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999988887788889999888888443
No 178
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=63.54 E-value=64 Score=31.89 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHH----HHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 78 LETEVKALQAEVAIMSPR---IKY----ADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQ 150 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~---l~~----l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q 150 (168)
.=++|.-|=.||+.|... +.. |-..-+.|..|+..|+-.|.+..+...--+-.+..|++|+.++|+-+.-.-|
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665432 222 2234456777777777777777666665566778899999999988776433
Q ss_pred h---hhhhhhhhhhhhhh
Q 035677 151 Q---QEQPKLVNNLNQRF 165 (168)
Q Consensus 151 ~---~~~~~~~~~~~~~~ 165 (168)
. ++--+.+-++--||
T Consensus 379 ~~~~~e~ddiPmAqRkRF 396 (832)
T KOG2077|consen 379 KAKDDEDDDIPMAQRKRF 396 (832)
T ss_pred hhcccccccccHHHHhhh
Confidence 2 34445555565666
No 179
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.50 E-value=1e+02 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
...|+..+..|+.+...|...+..+..
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444444333
No 180
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.27 E-value=83 Score=25.79 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYAD------CQNSLLRAENGSMKQKLSAFSGELT----FKEAQYEELKRERQILK 142 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~------~~~~~L~~EN~~Lk~rL~~l~q~~~----lkda~~e~L~~Ev~rLk 142 (168)
.-++.|..++..+..+...+..+|.... .+...+..+..+|+.++..|..+.. .--...+.++.++..++
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554432 2233334444444444444443322 11145677777777777
Q ss_pred HHHH
Q 035677 143 QLCI 146 (168)
Q Consensus 143 ~~~~ 146 (168)
.++.
T Consensus 149 ~~an 152 (188)
T PF03962_consen 149 EAAN 152 (188)
T ss_pred HHHH
Confidence 7664
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.14 E-value=65 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..||+.+..-..-...|..+|..++.+...|+.++.++..+|..+.+
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555444445566667777777777777777776666665554
No 182
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.60 E-value=16 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
|+.+++.|...++.++.+|..|..+|....
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578889999999999999988888887654
No 183
>PHA03162 hypothetical protein; Provisional
Probab=62.55 E-value=5.8 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
++.-++||+.++..|+.||..|..+|.
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999988883
No 184
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.34 E-value=32 Score=23.15 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
..+.+.+|+.++..|+.++..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777777777777777666
No 185
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.32 E-value=77 Score=30.71 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFK 127 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lk 127 (168)
.+-+++|..++..|..+...+...+..+......+..+..+.+.....++++..++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554444444444444444444444444444443333
No 186
>PF14645 Chibby: Chibby family
Probab=61.43 E-value=28 Score=26.70 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 035677 14 LPPIPLP 20 (168)
Q Consensus 14 s~~~p~~ 20 (168)
||+-+||
T Consensus 9 spk~~p~ 15 (116)
T PF14645_consen 9 SPKKPPL 15 (116)
T ss_pred CCCCCCC
Confidence 3444433
No 187
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.28 E-value=31 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
.||..|...|..++.+...|..||.+|+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777766654
No 188
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.27 E-value=1.1e+02 Score=32.11 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
||+..+..+...+..-+.....-.+++..|..|-.+|...+....++..-.....+.|+.|+..|+...
T Consensus 791 dl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444445556777888888888888888888887777778888888887777654
No 189
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=61.12 E-value=64 Score=25.11 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
..|+.-..=+.|-++|.++|+.|+-+...+..-|..|.-|+.-|+
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666666666666666666665544
No 190
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=61.01 E-value=58 Score=23.24 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFK 127 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lk 127 (168)
+...+..++..++.+...|..||..|+..+..+.....+.
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3445555666666777777777777777776666544443
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.69 E-value=55 Score=33.38 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
-++.|-..+..|+.|+..|.+++.....++..|..++.-||.+|.
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666677777777777777777777777777777777777776
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.61 E-value=55 Score=30.17 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 035677 104 SLLRAENGSMKQKLSAFSGELTFKEAQ 130 (168)
Q Consensus 104 ~~L~~EN~~Lk~rL~~l~q~~~lkda~ 130 (168)
.-+..||..|..+|+++.+++.=++-+
T Consensus 137 ~~~~EEn~~lqlqL~~l~~e~~Ekeee 163 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQECGEKEEE 163 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHhHHH
Confidence 334445555555555555544444333
No 193
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=60.45 E-value=1.3e+02 Score=31.55 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 92 MSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 92 L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
+.+.++.+.+++..+...-..+..++..|+.....-+-+|..|-++|+-|+..
T Consensus 507 l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 507 LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556666666666666666666677777777777664
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.06 E-value=95 Score=30.12 Aligned_cols=60 Identities=28% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
|..+|..+|..+..+...+..+...|+..+..+..+..-....++.+..|+...+.++.+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444455555554444444433
No 195
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.95 E-value=96 Score=25.41 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
..+++.++..|+.++..|..++..+...+..+...+.+.++... ....-+.+.|++..++|+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~------k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE------KKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777666666555544433222 1122344556666666654
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.69 E-value=87 Score=32.01 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh-hhhhhHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF-SGELTFKE 128 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l-~q~~~lkd 128 (168)
..|.++|-..+..+.....++-.++..+.+....|..||.+|...+... .++.+++|
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~ 706 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD 706 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888888888888765 33344444
No 197
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=59.51 E-value=29 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQ 150 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q 150 (168)
.+|..+|.+|. -..+.||..||..|+..-|
T Consensus 11 ~eL~~rl~~LD----------~~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 11 EELQQRLASLD----------PEMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhc
Confidence 46777777665 4678999999999987665
No 198
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.46 E-value=24 Score=27.46 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
|+..|..+|..|.+.+..|..||.-||
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555556666666655
No 199
>PRK02119 hypothetical protein; Provisional
Probab=59.41 E-value=59 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.++|.++..|+...+-....|..|.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777765555444444443
No 200
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.31 E-value=89 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 035677 74 YIMQLETEVKAL 85 (168)
Q Consensus 74 yi~eLE~kV~~L 85 (168)
+|..||+.+...
T Consensus 25 ~v~~LEreLe~~ 36 (140)
T PF10473_consen 25 HVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHH
Confidence 445555444333
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=59.17 E-value=1.6e+02 Score=28.70 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
+++++-..+++.+...+......+...|.....++..+..||..|-.+|..+...
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4555555566666666666666665555555555555555555555555554443
No 202
>PRK02224 chromosome segregation protein; Provisional
Probab=58.89 E-value=1.9e+02 Score=28.39 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 035677 76 MQLETEVKALQ 86 (168)
Q Consensus 76 ~eLE~kV~~Lq 86 (168)
++.+.+...|+
T Consensus 533 e~~~~~~~~l~ 543 (880)
T PRK02224 533 EEKRERAEELR 543 (880)
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 203
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.71 E-value=28 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
..++.....|..+|..|..++..|.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555544
No 204
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.55 E-value=49 Score=31.42 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+|..+|+.+..+...+......+..+|..
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIke 108 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEK 108 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 33334444433333344444444444443
No 205
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.46 E-value=67 Score=28.73 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHHHHH
Q 035677 98 YADCQNSLLRAENGSMK 114 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk 114 (168)
.|...|..|-.||.+|-
T Consensus 214 ~LMAKCR~L~qENeElG 230 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELG 230 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666654
No 206
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=58.37 E-value=44 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 96 IKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
...|+.+|..|..||++|+.++..|+.
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666655543
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.33 E-value=42 Score=31.58 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Q 035677 47 RELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF 126 (168)
Q Consensus 47 ~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l 126 (168)
...+|...+++|-.=-. +.+|..++..+-.+...+..++..+..+...+..+...|+.+|..+.. +.+
T Consensus 139 ~l~~~~~~~~lLD~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~-~~l 206 (563)
T TIGR00634 139 LLFRPDEQRQLLDTFAG-----------ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE-ADL 206 (563)
T ss_pred HhcCHHHHHHHHHHhcC-----------chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-CCc
Confidence 44577777776642111 123444444445555555555555555555555666666666666654 333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 127 KEAQYEELKRERQILKQL 144 (168)
Q Consensus 127 kda~~e~L~~Ev~rLk~~ 144 (168)
+..+.+.|+.|+.+|...
T Consensus 207 ~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 207 QPGEDEALEAEQQRLSNL 224 (563)
T ss_pred CCCcHHHHHHHHHHHhCH
Confidence 566666677666666544
No 208
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.24 E-value=64 Score=30.19 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 61 RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 61 ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
-++|.--|.|-++--...|..+..+..|..-|.+++...+....+|..|+..||.-+..++-.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456777788888888888888888888888888888888888888888888888777666543
No 209
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.16 E-value=1.6e+02 Score=27.36 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQL 144 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~ 144 (168)
...+.+++++..|+..
T Consensus 152 ~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 152 RRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555666655443
No 210
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.03 E-value=57 Score=22.23 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSL 105 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~ 105 (168)
+..++..+..++.||..++..+..+.+.-..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777666654433
No 211
>PRK04406 hypothetical protein; Provisional
Probab=57.96 E-value=65 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
++++|.++..|+...+-...-|..|..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665555554444443
No 212
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=57.74 E-value=80 Score=24.50 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 035677 71 QLHYIMQLETE 81 (168)
Q Consensus 71 K~~yi~eLE~k 81 (168)
+++||..++..
T Consensus 79 ~~~~i~~~~~~ 89 (139)
T PF13935_consen 79 AQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 213
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.69 E-value=49 Score=28.48 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
.+-+..|..+|..|++.|-.|.++|.+|+.
T Consensus 106 ~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 106 QQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999999999999975
No 214
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=57.66 E-value=51 Score=27.13 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+=.|+++..|+.+|..|..++..|
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544443
No 215
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.63 E-value=1.9e+02 Score=28.13 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHHHHhhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYA----------------------------DCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l----------------------------~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
-+.+|+..+..|+.++..|..+|..+ ......|..||..|+.+|..|+.
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666666666666666666655431 24667899999999999966543
No 216
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=57.16 E-value=1.2e+02 Score=30.62 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLR----------AENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~----------~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..+|..|+...+.|.++|..|..+|..|+ ++-..|++|-.++-+-.-=++-..|+|...+.-||.+|.-
T Consensus 872 q~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~ 950 (961)
T KOG4673|consen 872 QTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKE 950 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444444443333 2223334444444443344566778888889999999864
No 217
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.74 E-value=78 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
.|+.+|+.|+.+++.+.++|..|
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444433
No 218
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=56.11 E-value=96 Score=24.22 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
..|+.|+.++...+.........|..|+.....+..+..+...++
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677777777777777777777888888777777777766554
No 219
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=56.03 E-value=72 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 92 MSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 92 L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
+-.=+..++.+.+.+..|+=.|+++|..+.++.
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577889999999999999999998887754
No 220
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.77 E-value=99 Score=24.27 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-.++++.++..|..++..+..+|..|++.+..|..+-..+..+|..+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766666666666666666666666655555555443
No 221
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=55.70 E-value=66 Score=24.99 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
=.+|..|+.....+..++..+.++...|..||..|+....-|.
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 3466777777777777777777777777777777765554443
No 222
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=54.83 E-value=75 Score=23.87 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=43.2
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 45 EDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 45 ~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
.....|-..+-..+.|=-.|.-....+..+.+..=.++=.|- .--|.+|-+-...|...+..|..++..+..+.
T Consensus 23 i~~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLa------Ql~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~ 96 (118)
T PF13815_consen 23 IVRELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLA------QLSIEYLLHCQEYLSSQLEQLEERLQELQQEI 96 (118)
T ss_pred HHhccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666665554444433332111 11233444444445555555555555544443
Q ss_pred hHHHHHHHHHHHHHHHH
Q 035677 125 TFKEAQYEELKRERQIL 141 (168)
Q Consensus 125 ~lkda~~e~L~~Ev~rL 141 (168)
.--......+.+|+..|
T Consensus 97 ~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 97 EKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444444
No 223
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.61 E-value=43 Score=22.52 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQ 86 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq 86 (168)
++.-|.|||.++..=.
T Consensus 2 w~~Rl~ELe~klkaer 17 (52)
T PF12808_consen 2 WLLRLEELERKLKAER 17 (52)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 5566778877765433
No 224
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.40 E-value=1.6e+02 Score=32.63 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.+.+++..+++.+..|.+|..+|+..+.+++......+...+.+..+|..+.
T Consensus 1657 e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1657 ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3334444444555666666666666666666555555555555555555544
No 225
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=54.09 E-value=1.6e+02 Score=29.57 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE----LTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~----~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
-|-.||++|...-..|....+.-+.++..++-.-..|..|-..++.+...+.+. ..-+-+.-+.|..||+.+|..+
T Consensus 605 nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a 684 (786)
T PF05483_consen 605 NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTA 684 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445566666666555555555555555555555555555555555544443322 2223345567777777777665
No 226
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=54.02 E-value=2.2e+02 Score=27.82 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA 129 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda 129 (168)
++.+.+|+...-.|..+|.+|...+..-++-...|...-+.|...|..+.....+|+-
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4677888888888888888887777766666656666556666666665555555543
No 227
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=53.78 E-value=76 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 035677 105 LLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q 122 (168)
.+..||..|+..+..|..
T Consensus 101 ~~~~e~~~l~~e~~~l~~ 118 (161)
T TIGR02894 101 ALQKENERLKNQNESLQK 118 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555544
No 228
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.62 E-value=1.2e+02 Score=29.49 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 035677 124 LTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 124 ~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
..++....+.|++|.+.|+....
T Consensus 561 ~~~k~~~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 561 EQIKKSTLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999997763
No 229
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.57 E-value=55 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
++||+.++..|+.|+..+...+..-.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777665443
No 230
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.52 E-value=1.9e+02 Score=26.81 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+|-+.++..||.-+.++..||..|..+++.+.+++.....|+..|-..|.+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455667777888888888889888888888888887777777666555543
No 231
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=52.33 E-value=20 Score=35.76 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 56 RVLASRQYSQKYRLKQLHYIMQLETEVKALQAE 88 (168)
Q Consensus 56 RilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~E 88 (168)
|.|..=+-|.-|++.|+.|++||..++.-|+..
T Consensus 414 ~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~kk 446 (763)
T TIGR00993 414 KPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKK 446 (763)
T ss_pred ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999988764
No 232
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.31 E-value=56 Score=25.76 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
|...|..+..|+.+...=-.+|..|..+...+...|..|..|
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455555555555555555555555555555666555443
No 233
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.16 E-value=87 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
..|+.||..|..++..|..+-..| |++.|+..+..=.. +-|+..+.+-+=+.+.|.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~ve---t~dv~~d~i~Kimnk~Re 90 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVE---TNDVIYDKIVKIMNKMRE 90 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHH---HHHHHHHHHHHHHHHHhh
Confidence 455566666666666555555555 55555543322111 114455555555555443
No 234
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=51.85 E-value=31 Score=23.92 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVA 90 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~ 90 (168)
.+|+.++..|+.||.
T Consensus 24 ~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 24 AELEERNSQLEEENN 38 (59)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 235
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=51.56 E-value=8.4 Score=31.22 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
...+..|..+...|..++..|.+ ||.-|+.++....+..+-.+.....|..|+.+|+++.-.
T Consensus 14 ~~~L~~l~~erqkl~~qv~rL~q-------EN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~ 75 (181)
T PF09311_consen 14 QQHLQSLEAERQKLRAQVRRLCQ-------ENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSI 75 (181)
T ss_dssp HHHHHHHHHCCHHHHT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHh
Confidence 33344444444444444444444 334444444333333344444566677777777777654
No 236
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.08 E-value=1.7e+02 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
++-.+...++.|+..|..++..++
T Consensus 139 e~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444333
No 237
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.87 E-value=1.4e+02 Score=24.64 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRA---ENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~---EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.++.++..|...+..+..+...|.. ....+...|..|..+.....--++.+..|...|...+
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443322 2233344455555554444455555556655555443
No 238
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.76 E-value=72 Score=27.29 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 106 LRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
|..|-......|.....+..--.-..|.+..|..||-.-+.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33333334444444433333333456667777777765543
No 239
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.72 E-value=2.4e+02 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035677 127 KEAQYEELKRERQILKQLCIMYNQQQEQP 155 (168)
Q Consensus 127 kda~~e~L~~Ev~rLk~~~~~~~q~~~~~ 155 (168)
.+..+..|+.|++-.+.+|....+..++-
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887766554443
No 240
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.71 E-value=2.1e+02 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
+-.+...|.++-..+.+.+...+.+...|..||..|..+.
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555555555555443
No 241
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.03 E-value=1.3e+02 Score=26.96 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.++..-++.|+.+.+.++.++.. +.++|-..|.++.+-.-.-..-.+.++.||.+++.++-.
T Consensus 132 ~~~~~~~~~l~~~va~v~q~~~~----------qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln 193 (300)
T KOG2629|consen 132 DKAAKSLNALMDEVAQVSQLLAT----------QQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLN 193 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 34444555566666655554443 333555555555544444455778899999999998743
No 242
>PF14282 FlxA: FlxA-like protein
Probab=49.83 E-value=1e+02 Score=22.93 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSP 94 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~ 94 (168)
.|..|+.++..|+.+...|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555544443
No 243
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.70 E-value=1.5e+02 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l 99 (168)
|.++..++..+..|..+|..+
T Consensus 133 EeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHH
Confidence 334444444444444444443
No 244
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=49.56 E-value=1.9e+02 Score=25.60 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 035677 100 DCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEEL 134 (168)
Q Consensus 100 ~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L 134 (168)
...+..+..+|..|+.+|.++..+..+++..++.+
T Consensus 127 ~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~ 161 (309)
T PF09728_consen 127 SERNIKLREENEELREKLKSLIEQYELREEHFEKL 161 (309)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999988888665544
No 245
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.41 E-value=2.6e+02 Score=27.27 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035677 128 EAQYEELKRERQILKQLCIMYNQQQEQ 154 (168)
Q Consensus 128 da~~e~L~~Ev~rLk~~~~~~~q~~~~ 154 (168)
+.....|++|++-.+.+|....+..++
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888788777665554443
No 246
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.23 E-value=1.6e+02 Score=24.64 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH---HHHHHHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA---QYEELKRERQILK 142 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda---~~e~L~~Ev~rLk 142 (168)
+++.|+.+...-..+...|+..|.+|.....++.. ....|+.|+.+.+
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~ 98 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMR 98 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555566666665555554442 2344444444433
No 247
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.13 E-value=1.7e+02 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRI-------KYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l-------~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..|.++..++..+..||..|+..| ..|........++...|..+|.+++.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ek 148 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEK 148 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346666666667777777666522 23344444444455555555555554
No 248
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.11 E-value=1.1e+02 Score=23.02 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA 129 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda 129 (168)
-+.+.+|++..+..+-.+-...-.+.. ..+-.....+..++.....++..|..+|..|+.++..|... +|+
T Consensus 19 ~~~~~~~~l~~~l~~~l~~f~~~~~~g------~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~ 89 (117)
T COG2919 19 RRVRRRRILTLVLLALLALFQYLAWFG------KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDY 89 (117)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHH
Confidence 345556666666666554443333322 22222333444555566667777777777777777777776 444
Q ss_pred HHHHHHH
Q 035677 130 QYEELKR 136 (168)
Q Consensus 130 ~~e~L~~ 136 (168)
+-|....
T Consensus 90 i~e~AR~ 96 (117)
T COG2919 90 IEERARS 96 (117)
T ss_pred HHHHHHH
Confidence 4444333
No 249
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.95 E-value=1.9e+02 Score=25.63 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSP----RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~----~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
..+.+.|..++..|+.....+.. .+..+......+..+....+..+..+..+..-...-.+....+.+.++....
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 250
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.89 E-value=1.7e+02 Score=24.84 Aligned_cols=69 Identities=28% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
|+=|-.++...+.|.+.=..+|-.|..+...++++......++..+.....-+.+.-+....|++|.+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 445555555555555554445555555555555555555555555555555555555555555555443
No 251
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=48.89 E-value=1.3e+02 Score=23.46 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+-.-++.+...=..|-.+|+.||..|+.+..-.+.+++.|.+-|.-|-.+..+
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677889999999999999999999988888877777666654
No 252
>PF15058 Speriolin_N: Speriolin N terminus
Probab=48.63 E-value=52 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
+.|-.++..|-.||.+|+.++..+. ||.+||.=|.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ 42 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALG 42 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHH
Confidence 5577889999999999999998665 6666665543
No 253
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.46 E-value=85 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.||.++.+..+.|..-|...|+.+..+|..|+.|-+.+|.....+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5788888888899999999999999999999999999998775443
No 254
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.33 E-value=87 Score=21.42 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQNSLLRAE 109 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~E 109 (168)
.+|..|..++..|..+|..|..+...|+.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777766665555543
No 255
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=48.30 E-value=1.1e+02 Score=22.66 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSM 113 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~L 113 (168)
=|+.|=.-.+.+|..|+.++..+..++..|..+...-+.|-..|
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777788888888888888887777777666665554443
No 256
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.20 E-value=2.1e+02 Score=25.80 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 67 YRLKQLHYIMQLET---EVKALQAEV----AIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 67 SR~RK~~yi~eLE~---kV~~Lq~En----~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+.++-..|++|.|. +...|+... ..|...|..+..+...|.+||..|..+|..
T Consensus 22 ~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 22 NQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 45566677777653 223333221 233444555666667777777777766643
No 257
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.17 E-value=1.3e+02 Score=23.33 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
++.++..++..|+......+.+|..+.. .+.+|..|+-.+.....+-.-..-.|..|-+.|+.-
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~-------r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~ 115 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARR-------RHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKR 115 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4555566666665555555555554443 444444454443333333333333444444444433
No 258
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.92 E-value=2.5e+02 Score=26.71 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHhh--------------
Q 035677 71 QLHYIMQLETEVKALQA----------EVAIMSPRI-------KYADCQNSLLRAENGSMKQKLSA-------------- 119 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~----------En~~L~~~l-------~~l~~~~~~L~~EN~~Lk~rL~~-------------- 119 (168)
..+|+++|+.--..|+. ||+.|...+ ..-++++..|.+.|.+|.-||.+
T Consensus 416 RrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGg 495 (593)
T KOG4807|consen 416 RRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGG 495 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCC
Confidence 35798888765444443 333333222 22367888999999999887753
Q ss_pred --------------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 120 --------------FSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 120 --------------l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
|+--..+|+-+...|+.||+-||--.++
T Consensus 496 GtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 496 GTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred CCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222456677788889999888877655
No 259
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.90 E-value=71 Score=22.52 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSL 105 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~ 105 (168)
..+..|+.++..++.+...|..++..+......
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555555555555544333
No 260
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=47.53 E-value=52 Score=25.85 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKL 157 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q~~~~~~~ 157 (168)
|++++..+-.....+.+.|..+...+....-+-..++..+.+++.-..-+|..+++-..|...-.....-+- -+.|+.
T Consensus 35 L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~~em~ef~~~~~~f~--~~~r~q 112 (121)
T PF12507_consen 35 LERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKRKEMKEFQPMVERFV--SETRPQ 112 (121)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhhcchHHHHHHhhccc--ccCchh
Confidence 456666666666667777777777777777777777777777887777888888888887766655543321 244555
Q ss_pred hhhhhh
Q 035677 158 VNNLNQ 163 (168)
Q Consensus 158 ~~~~~~ 163 (168)
|+.+=|
T Consensus 113 v~~lr~ 118 (121)
T PF12507_consen 113 VQSLRN 118 (121)
T ss_pred hcccCC
Confidence 555433
No 261
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=47.21 E-value=2.1e+02 Score=27.43 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHHHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFK-EAQYEELKRERQILKQLC 145 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lk-da~~e~L~~Ev~rLk~~~ 145 (168)
+...|..++...+.++.....|.-.|..++.+...-.-++ .++++..++|++.||...
T Consensus 260 sl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 260 SLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3344555566666555556666666666555322222222 366777777888887664
No 262
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.78 E-value=1.7e+02 Score=24.45 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 035677 108 AENGSMKQKL 117 (168)
Q Consensus 108 ~EN~~Lk~rL 117 (168)
.+-..|..++
T Consensus 84 ~el~~L~~qi 93 (251)
T PF11932_consen 84 QELASLEQQI 93 (251)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 263
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.75 E-value=1.1e+02 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
.|-.++..|.+++..++..+..+.+|-++|.
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 264
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.75 E-value=1.3e+02 Score=22.96 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhh
Q 035677 102 QNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 102 ~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+...|..+...++.|+..|..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 265
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=46.74 E-value=3e+02 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhh---------------hhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 99 ADCQNSLLRAENGSMKQKLSAFSG---------------ELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 99 l~~~~~~L~~EN~~Lk~rL~~l~q---------------~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.++-...|..|+..|+.++..... ..-.+|-++..|..+|+|++....
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777777766654333 233467788888999999887764
No 266
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=46.70 E-value=32 Score=26.87 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
..|..+...|.+||+.||.+|..-.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3455556678899999999997644
No 267
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.53 E-value=2.6e+02 Score=26.37 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
...+..|......|+.|-...|.-+..+.+...........|..|+.++|.-.
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555566666665555443
No 268
>PRK10698 phage shock protein PspA; Provisional
Probab=46.45 E-value=1.8e+02 Score=24.43 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA 129 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda 129 (168)
+..|+..+.........|...+..|+.....+.+.-..|..|.....-...+.++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777888888888888888888888877776666666554
No 269
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.23 E-value=1.9e+02 Score=28.61 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
...-+.+|+.+...|+.....|..++..+......|...-..+...+.. +...+.+|+ ...++|+++++...
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~--~~P~LS~AE-r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS--QLPVLSEAE-REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544444444433334333322 122344455 34555555555443
No 270
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.17 E-value=3.8e+02 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
..-|++++.++..|......+..++..
T Consensus 688 e~~l~e~~~~~~~l~~~~~q~~~~~~~ 714 (1074)
T KOG0250|consen 688 EKNLEELEKKLRELSEHIEQIKRRIRK 714 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444444443333
No 271
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.01 E-value=2.1e+02 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035677 128 EAQYEELKRERQILKQLCIMYNQ 150 (168)
Q Consensus 128 da~~e~L~~Ev~rLk~~~~~~~q 150 (168)
.+.++.|+.|++--+.+|....+
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~ 299 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALT 299 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887777777665433
No 272
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=45.58 E-value=1.1e+02 Score=21.68 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+.|...+....+++..|.+.+..|..++..|.
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 273
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.39 E-value=2.3e+02 Score=25.52 Aligned_cols=68 Identities=19% Similarity=0.101 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677 61 RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE 128 (168)
Q Consensus 61 ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd 128 (168)
-++++|-.--.+..+.++|...+.=+......-.+-..++.....|.+||--|+++|.........++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777667777777776655555555544455555666666667777777777765544443333
No 274
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=45.36 E-value=1.8e+02 Score=29.53 Aligned_cols=44 Identities=23% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-|.++.+|+.+.+.|...-+.|..+...|..||..|+.+.....
T Consensus 864 reGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p 907 (961)
T KOG4673|consen 864 REGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVP 907 (961)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35678899999999999999999999999999999887765443
No 275
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=45.19 E-value=2.2e+02 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
...+..-..++..|+..|.+|..++..|..+...+.-+++.+..-++--..+..
T Consensus 122 qktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~ 175 (391)
T KOG1850|consen 122 QKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGK 175 (391)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333445778899999999999999988888888777777766663333433
No 276
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.06 E-value=2.3e+02 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE 128 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd 128 (168)
-|.-|+.....+..+|..|+..|..|.+|...|..-++.+..+..-.+
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~e 140 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENE 140 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666666666655555554443333
No 277
>PHA03155 hypothetical protein; Provisional
Probab=44.67 E-value=31 Score=26.84 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
..|..+...|.+||+.||.+|..
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666788999999999954
No 278
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=44.40 E-value=1.6e+02 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIK-------YADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~-------~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
.|++|-.+++.||.--...+.++. .|.++.+.|..|...|..-|.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 477888888888865444455554 455566666666655554443
No 279
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.21 E-value=1e+02 Score=23.19 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 101 CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 101 ~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.+......|-.-|+..|..|+. +|+.|+.|+.++|..+
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~-------eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELED-------ENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 3333334455555666666665 6777777887777765
No 280
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.10 E-value=2.5e+02 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 48 ELEAKKLRRVLAS------RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 48 ~~D~Kr~KRilaN------ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
..||.+..++..- ..........-..-.+-|+.++..|+.+......++..+..++..+
T Consensus 163 ~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 163 SEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL 227 (754)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4578888776431 1111111112222344555566666666665555555555544443
No 281
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.96 E-value=1.8e+02 Score=23.95 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA 129 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda 129 (168)
..+..|+..+..+...+..|..+|..|+.....+.+.-..|..|.........+...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~ 155 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQ 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777777777777777777655554444443
No 282
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.63 E-value=1.5e+02 Score=27.05 Aligned_cols=45 Identities=29% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQ----NSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~----~~~L~~EN~~Lk~rL~~l~q 122 (168)
|..++..|+.+-..++.+|..+... ...|..+-++|+.+|..++.
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 90 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555543211 23444455555555555443
No 283
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.52 E-value=71 Score=25.78 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHH
Q 035677 83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS-GELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~-q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..+..+...|..+|..|+.++..|......+..+...+. ++..++-.++..-..+.+=|+..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777666566666555443 33555544444444444444443
No 284
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.42 E-value=2.6e+02 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 035677 127 KEAQYEELKRERQILKQLCIMYNQQ 151 (168)
Q Consensus 127 kda~~e~L~~Ev~rLk~~~~~~~q~ 151 (168)
.+..+..|..|++-.+..|....+.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888887777777665544
No 285
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=43.38 E-value=3.2e+02 Score=30.37 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l 96 (168)
+++++.+-..++.+...+..++
T Consensus 68 ~~~~~~q~~~~~~e~s~l~~~L 89 (1822)
T KOG4674|consen 68 LSDLSRQAKLLRNELSDLRNEL 89 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 286
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.26 E-value=2.3e+02 Score=24.84 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHH
Q 035677 63 YSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYA----DCQNSLLRAENGSMKQKLSAFSGELT-FKEAQYEELKRE 137 (168)
Q Consensus 63 SA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l----~~~~~~L~~EN~~Lk~rL~~l~q~~~-lkda~~e~L~~E 137 (168)
.=+--..+--..+..|+.+|..|.+.+.....++.+| +++|-.-...-..|.-+|+.+....+ =-|.+++..+.|
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~e 150 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQME 150 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455566777777777777777776666554 45665555566666666665543322 123344444444
Q ss_pred HHHH
Q 035677 138 RQIL 141 (168)
Q Consensus 138 v~rL 141 (168)
...|
T Consensus 151 l~~l 154 (258)
T PF15397_consen 151 LASL 154 (258)
T ss_pred HHHH
Confidence 4333
No 287
>PHA03162 hypothetical protein; Provisional
Probab=42.96 E-value=33 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHh
Q 035677 97 KYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
..|..+...|.+||+.||.+|.
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566678899999999994
No 288
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.76 E-value=8.1 Score=37.40 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
+|+.=+.+|..+|..|+..|..+-.++..|+.
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888776665555543
No 289
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=42.75 E-value=1.4e+02 Score=26.06 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 105 LLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.+..||..||.++..+.+. ....+.|++|=++||.+.-.
T Consensus 70 ~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 70 DLALENEELKKELAELEQL----LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC
Confidence 3555666666666555542 23455667777777766543
No 290
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.54 E-value=1.8e+02 Score=23.32 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 109 EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
++..++..+..+..+..-++...++|++.++.|-
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445556666666665543
No 291
>PRK14127 cell division protein GpsB; Provisional
Probab=42.53 E-value=1e+02 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
|+++....+..|..|+..|..++..+
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l 56 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARL 56 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444443333
No 292
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.47 E-value=2.9e+02 Score=27.69 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQA 87 (168)
Q Consensus 75 i~eLE~kV~~Lq~ 87 (168)
|.+|+..+.++..
T Consensus 36 i~~l~~elk~~~~ 48 (717)
T PF09730_consen 36 ILELENELKQLRQ 48 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 293
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.28 E-value=1.4e+02 Score=32.02 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035677 89 VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151 (168)
Q Consensus 89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q~ 151 (168)
+..|...+..|..+...+...-.++..+|..+.+..-+....-|.|.+|+.-|-.+++..-++
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~ 1289 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQ 1289 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556666666666666666677777777776666654443
No 294
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.76 E-value=3.7e+02 Score=27.45 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
..+.|.......|+..|.+|..-|...
T Consensus 441 ~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 441 NQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 345555666666666666665555433
No 295
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.24 E-value=1.2e+02 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
.++|.++..|+...+-...-|..|.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln 28 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELN 28 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666665554444444333
No 296
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=41.09 E-value=1.8e+02 Score=23.03 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
-++..++..+...+.......+.+..+..+|..|.....-.+..+..|..+......+..+
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~ 79 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQ 79 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777888888888888877777777777787777777766654
No 297
>PRK11519 tyrosine kinase; Provisional
Probab=41.07 E-value=3.5e+02 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035677 128 EAQYEELKRERQILKQLCIMYNQQQEQ 154 (168)
Q Consensus 128 da~~e~L~~Ev~rLk~~~~~~~q~~~~ 154 (168)
+.....|++|++--+.+|....+..++
T Consensus 369 e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 369 QQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778887777777665554433
No 298
>PRK11239 hypothetical protein; Provisional
Probab=41.05 E-value=53 Score=28.14 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQ 102 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~ 102 (168)
++||.+|..|+.|++.|..++..+..+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888777766543
No 299
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=41.02 E-value=3.9e+02 Score=26.93 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
++.++.++..=..|...+..++..+..+...++.....|+..|.+..+ ..+.|..||++||.-
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~-------~~~~Lqsdve~Lr~r 351 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ-------EAEMLQSDVEALRFR 351 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHH
Confidence 677777777777777777777777766666666666666666666665 555555555555544
No 300
>PLN02678 seryl-tRNA synthetase
Probab=41.02 E-value=3.1e+02 Score=25.69 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhhH
Q 035677 50 EAKKLRRVLASRQ 62 (168)
Q Consensus 50 D~Kr~KRilaNRe 62 (168)
+|..+++.+++|-
T Consensus 14 ~~~~v~~~l~~R~ 26 (448)
T PLN02678 14 DPELIRESQRRRF 26 (448)
T ss_pred CHHHHHHHHHhhC
Confidence 5667777777775
No 301
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=40.54 E-value=2.6e+02 Score=24.69 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-------HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQK-------LSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~r-------L~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..++..+......|.-||..++.+ |-.|..+....+-..+.++.-+++|-.++..
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666544 4456666666677788888888888888876
No 302
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=40.54 E-value=50 Score=33.59 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSP-----RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~-----~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
-+||.+++.++..|+.|...++. ++..++..+..+..+|..|-.+++..+..-+.-.+--+-|..+=..||.+.
T Consensus 828 ~kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~~l~~~e~~~k~~l 906 (948)
T KOG4436|consen 828 SKQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVEQLLEHENKLKRAL 906 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhhhhhcchHHHHHHH
Confidence 36899999999999999887765 344556666666666666666665554443333343343333333455444
No 303
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=40.50 E-value=2.3e+02 Score=24.03 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l 99 (168)
++..+..++.+...+...+...
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~a 120 (334)
T TIGR00998 99 LEITVQQLQAKVESLKIKLEQA 120 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 304
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.19 E-value=1.4e+02 Score=21.75 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
..|+.++..+..+...+..++..+..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~ 91 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQE 91 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 305
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.19 E-value=4.5e+02 Score=27.32 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQY 131 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~ 131 (168)
.|..-+..-=+|++.+.. ....++..|..+|..++++...+.+--..+...+.+|.++..+.....
T Consensus 445 ~K~~di~kQle~~~~s~~--------------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~ 510 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIEL 510 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 035677 132 EELKRERQILKQLCIMYNQQ 151 (168)
Q Consensus 132 e~L~~Ev~rLk~~~~~~~q~ 151 (168)
+.|..++.++...+..+.++
T Consensus 511 ~~lq~~~~~~~qs~~~~~~~ 530 (980)
T KOG0980|consen 511 EELQRTLSNLAQSHNNQLAQ 530 (980)
T ss_pred HHHHHHhhhHHHHHHHHHHH
No 306
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.11 E-value=1.2e+02 Score=20.79 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+|.++..|+...+-....|..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444444333
No 307
>PRK12704 phosphodiesterase; Provisional
Probab=40.04 E-value=3.3e+02 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 94 PRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 94 ~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.++.....+...+..+...--.++..|+.
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33333333444444333333344444444
No 308
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.72 E-value=3.9e+02 Score=26.50 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=9.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHH
Q 035677 116 KLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 116 rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
+|+.+.....-+|.+...|+.-|
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433
No 309
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.59 E-value=1.4e+02 Score=21.19 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH---------HHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE---------AQYEELKRERQILKQLCI 146 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd---------a~~e~L~~Ev~rLk~~~~ 146 (168)
...|+.|..+|-.|...---|..+|..... ..+.+ +..+.|+.|++.++.+..
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~-~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGP-ESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555542211 11222 344555556665555544
No 310
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=39.00 E-value=99 Score=29.44 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 92 MSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 92 L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+...+..|+.++.+|+.-+++|++++.+.. .+|-+||+++-.
T Consensus 411 l~e~le~Lq~Q~eeL~e~~n~l~qrI~eer--------------~~v~~lkql~~~ 452 (514)
T KOG4370|consen 411 LQEILELLQRQNEELEEKVNHLNQRIAEER--------------ERVIELKQLVNL 452 (514)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 445566778888888888888888876554 456667766643
No 311
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.78 E-value=3.2e+02 Score=25.31 Aligned_cols=11 Identities=18% Similarity=0.148 Sum_probs=5.4
Q ss_pred CCccccCCCCC
Q 035677 20 PSSFSRKNTGD 30 (168)
Q Consensus 20 ~~~~sr~gsG~ 30 (168)
++++.-+|.|.
T Consensus 40 ~~Slrv~~~g~ 50 (525)
T TIGR02231 40 DDSLRVSGEGL 50 (525)
T ss_pred cCcEEEEecCC
Confidence 33554455554
No 312
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=38.65 E-value=2.8e+02 Score=26.33 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+|++-|...+.+.......+...+..+.+....+..+-..+.-+|..|..
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~ 481 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVE 481 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666665555555666666666666666666666666666655544
No 313
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=38.64 E-value=10 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 48 ELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 48 ~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~ 93 (168)
..|+++.+=+-.||.+|-|+|-||+..+..|+.+...+..++..|.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3466664446789999999999999999999999999998888777
No 314
>PRK10963 hypothetical protein; Provisional
Probab=38.37 E-value=1.1e+02 Score=25.47 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+=.|++|..|+.+|..|..++..|-
T Consensus 40 SL~ErQ~~~LR~r~~~Le~~l~~Li 64 (223)
T PRK10963 40 SLVEWQMARQRNHIHVLEEEMTLLM 64 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777766554
No 315
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.35 E-value=3.9e+02 Score=26.16 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=25.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..+-..|..|..+.-.++-+.|.|+.|+..||.-.-.
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666777777888888888888876654
No 316
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.32 E-value=2.5e+02 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSP 94 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~ 94 (168)
.|++||++||..+..|......|..
T Consensus 26 ~k~~~ie~LE~qLk~L~k~~~~lv~ 50 (234)
T cd07665 26 EKLQEVECEEQRLRKLHAVVETLVN 50 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999887776654
No 317
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.14 E-value=2.5e+02 Score=23.90 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 101 CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 101 ~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
+.-.....+-+.|..+|..-...+-+.+---..|.++|.+|--
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~ 179 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE 179 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence 3333333333444444444333333333334456666666543
No 318
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.12 E-value=2.8e+02 Score=24.42 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 035677 12 QGLPPIPLPS 21 (168)
Q Consensus 12 ~~s~~~p~~~ 21 (168)
+-||-+|.++
T Consensus 38 TisSIiPTT~ 47 (290)
T COG4026 38 TISSIIPTTN 47 (290)
T ss_pred EEEeeccCch
Confidence 3455566555
No 319
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.89 E-value=2.3e+02 Score=27.47 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
..++.+++.-++.|+.++..+..++...-..|.+++.+|... ..-.+++.|.|++|++.|....
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e----------~~a~~~E~eklE~el~~lnL~s 549 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE----------LVAQRIEIEKLEKELNDLNLLS 549 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHHhhhhc
Confidence 346667777777777777777777777766666666655443 2334566777777777766543
No 320
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.37 E-value=1.4e+02 Score=20.86 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|=.-|.+|-.+...|....-.+...|..|......+..+...|+.++..+..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777777777777777777776554
No 321
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.30 E-value=2.2e+02 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
+..+......|...|..+......+..+-..|+.+....
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444333
No 322
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.22 E-value=2.4e+02 Score=23.40 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+|..|+.....+...|-++..-+..|+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555555555555555554
No 323
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.18 E-value=1e+02 Score=27.03 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+.+||.++..|+.++.+|+- +..++.++.....+..+.-.++..++.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~ 104 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLES 104 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 67788888888888877776 666665554444343444444554444
No 324
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.17 E-value=1.4e+02 Score=20.52 Aligned_cols=46 Identities=7% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
++..++..++.....+...+..++.....+...-..+..+|..+..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544555555555443
No 325
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.14 E-value=1.6e+02 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.210 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 035677 130 QYEELKRERQIL 141 (168)
Q Consensus 130 ~~e~L~~Ev~rL 141 (168)
.|..|..+|..+
T Consensus 95 eN~~L~~~i~~~ 106 (109)
T PF03980_consen 95 ENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 326
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=37.11 E-value=93 Score=28.19 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 101 CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 101 ~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
..+..|..||.+|+.++..|..+..- .+.+..|-.+|+.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 45566777777777777766554432 334445555566543
No 327
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.00 E-value=2.8e+02 Score=24.01 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQ----------LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK----------~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
|-+...+-+.....+-|.|..+ ..-+.+|...+..++.....|..+|..+......|..+-..|+.++..
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443 444566777777777777777777777777777777777777766665
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 120 FSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 120 l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
++... ...-..+..||.-++.
T Consensus 136 ~e~~~---~e~~~~~e~e~~~i~e 156 (239)
T COG1579 136 LEKNL---AEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHH---HHHHHHHHHHHHHHHH
Confidence 55432 1233444555555544
No 328
>PRK14127 cell division protein GpsB; Provisional
Probab=36.98 E-value=1.2e+02 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
+.|..++..|+.++..|..++..++.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 329
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=36.96 E-value=2.4e+02 Score=23.18 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKR 136 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~ 136 (168)
-|++.+.+...|+.+|..|+.+|..|...+.--|...+.+..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~ 82 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHR 82 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888889999999999999888887766666655543
No 330
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.66 E-value=1.6e+02 Score=21.23 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
.|..++..+...-..|..+|..|+.++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555556666666665553
No 331
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.65 E-value=2.6e+02 Score=28.83 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=7.8
Q ss_pred cCCCCCCCCCCCC
Q 035677 9 GNGQGLPPIPLPS 21 (168)
Q Consensus 9 ~~~~~s~~~p~~~ 21 (168)
-+|+-.|+..||.
T Consensus 262 ~sGq~lP~tlP~E 274 (1118)
T KOG1029|consen 262 KSGQPLPKTLPPE 274 (1118)
T ss_pred hcCCCCCCCCChh
Confidence 3466666666555
No 332
>PF14645 Chibby: Chibby family
Probab=36.57 E-value=1.4e+02 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+.|+.||.-|.-++..|-
T Consensus 79 ~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 333
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.55 E-value=1.4e+02 Score=25.99 Aligned_cols=45 Identities=24% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+..+..++..+-..|..++.++... ..+...|..||..|+.-|..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC
Confidence 4555555555555555555444433 33445677888888876653
No 334
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=36.32 E-value=2.5e+02 Score=23.37 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 96 IKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
+..+...+..+..||..|+..|..+.++...-++....|...-+.|+
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999988866555555555555554443
No 335
>PRK00846 hypothetical protein; Provisional
Probab=35.45 E-value=1.7e+02 Score=21.08 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+++.++..|+...+-...-|..|
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~L 32 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTEL 32 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444433333333
No 336
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.39 E-value=3.4e+02 Score=24.59 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHH-HHHHH---HHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYA---DCQNSL-LRAEN---GSMKQKLSAFSGE-LTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l---~~~~~~-L~~EN---~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rLk~~ 144 (168)
+-.++|+.+.+.|+........++..+ +..+.. +..+. ++|+..|..+... ..-....-+.|+++|.+-+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888777666544 333322 22222 2333333333221 222345567788888777754
Q ss_pred HH
Q 035677 145 CI 146 (168)
Q Consensus 145 ~~ 146 (168)
..
T Consensus 84 l~ 85 (330)
T PF07851_consen 84 LF 85 (330)
T ss_pred HH
Confidence 43
No 337
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.38 E-value=4.5e+02 Score=26.23 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE-LTFKEAQYEELKRERQIL 141 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rL 141 (168)
..|++|+.+...++.+..++......++.....|..+-..|+.+-..+... ..-.+...+..++|++.+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~ 589 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 338
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.35 E-value=2.8e+02 Score=25.07 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHH
Q 035677 60 SRQYSQKYRLKQLH 73 (168)
Q Consensus 60 NReSA~RSR~RK~~ 73 (168)
.|.++-+.+.+-..
T Consensus 37 er~q~LKkk~~el~ 50 (319)
T PF09789_consen 37 ERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHhh
Confidence 35555555554433
No 339
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.70 E-value=75 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
-+.||+.++..|+.|+..|.+++.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776654
No 340
>PRK04325 hypothetical protein; Provisional
Probab=34.50 E-value=1.6e+02 Score=20.62 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
...++.++..|+...+-....|.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe 26 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLID 26 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666654444443333
No 341
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=34.46 E-value=5.7e+02 Score=26.90 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHhh
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRI-----KYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l-----~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
.|-...-|=|.||+--.-+.++.-+|-++.|.+-.+|......|..=+ ..+.+-...+..|-++|+.++..
T Consensus 1025 ~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1025 SDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566789999999999999999999999999998887775433 33444556677788888887764
No 342
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=34.39 E-value=3.6e+02 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 65 QKYRLKQLHYIMQLETEVKALQAEVAI 91 (168)
Q Consensus 65 ~RSR~RK~~yi~eLE~kV~~Lq~En~~ 91 (168)
||.=.+-...++|+|+++.-|+.|...
T Consensus 48 QR~fv~evrRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 48 QRKFVNEVRRCDEMERKLRFLESEIKK 74 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445566677777777777776654
No 343
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.26 E-value=55 Score=27.75 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
|||.+|..|+.|.+.|..+|+.
T Consensus 189 dlearv~aLe~eva~L~~rld~ 210 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDS 210 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555443
No 344
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.10 E-value=2.7e+02 Score=22.99 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
+-..+++.+.+-++-..+=..-+.-+..++.++..|.-+...|..++..++.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433333333444444444444444444444444333
No 345
>PRK14160 heat shock protein GrpE; Provisional
Probab=34.07 E-value=2e+02 Score=24.37 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
+.+|+..+..|+.++..|..++..+...+..+.++..-+|.|..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666667777777776666677777666666654
No 346
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.83 E-value=2.4e+02 Score=22.39 Aligned_cols=9 Identities=11% Similarity=0.423 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 035677 111 GSMKQKLSA 119 (168)
Q Consensus 111 ~~Lk~rL~~ 119 (168)
.+|+.+|..
T Consensus 54 eeLk~~i~~ 62 (155)
T PF06810_consen 54 EELKKQIEE 62 (155)
T ss_pred HHHHHHHHH
Confidence 333333333
No 347
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.74 E-value=1.8e+02 Score=20.93 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRA---ENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~---EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
+|-.+...|..+...|..+-..+..+...+.. +-.+|+.+...+..+..--+.....+..++
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333332 123444444444443333333333333333
No 348
>smart00340 HALZ homeobox associated leucin zipper.
Probab=33.73 E-value=1.2e+02 Score=19.92 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 130 QYEELKRERQILKQLC 145 (168)
Q Consensus 130 ~~e~L~~Ev~rLk~~~ 145 (168)
+|..|.+|++-||.+.
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5666666777676654
No 349
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.55 E-value=3.2e+02 Score=23.72 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHH
Q 035677 62 QYSQKYRLKQLHYIMQ----LETEVKALQAEVAIMSPRIKYA----------------------DCQNSLLRAENGSMKQ 115 (168)
Q Consensus 62 eSA~RSR~RK~~yi~e----LE~kV~~Lq~En~~L~~~l~~l----------------------~~~~~~L~~EN~~Lk~ 115 (168)
+|+--.-|||--.+++ ++.++..|+.++..|..+|..+ ..++..|..-|..||.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKA 249 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhh
Q 035677 116 KLSAF 120 (168)
Q Consensus 116 rL~~l 120 (168)
+|+.+
T Consensus 250 QLegI 254 (259)
T KOG4001|consen 250 QLEGI 254 (259)
T ss_pred HHhhc
No 350
>PHA02557 22 prohead core protein; Provisional
Probab=33.36 E-value=2.7e+02 Score=24.70 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQ 130 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~ 130 (168)
..|..+|...+.....|..+|.+|+.++..+.....+.++-
T Consensus 144 ~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t 184 (271)
T PHA02557 144 AEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVT 184 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777888888888888888877777776643
No 351
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.17 E-value=1.3e+02 Score=24.83 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
..++..|..+...|+.++..|..+...++.++..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666665555554
No 352
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=32.97 E-value=3.5e+02 Score=26.03 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEE 133 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~ 133 (168)
..++.++..|..|..-+..+..++.....+...+..+-..|+.+...++....+-+++.+.
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888888888888888888878788888888887777777766666655443
No 353
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=32.93 E-value=3.8e+02 Score=24.40 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
|-|.-+..|..|-..+..+|..|.+++..+..|-..|.
T Consensus 23 ~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~ 60 (328)
T PF15369_consen 23 EKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQ 60 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556677777777888888888887777776665554
No 354
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=32.76 E-value=1.6e+02 Score=23.26 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 98 YADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..++....|..||.-||.-|-++.. +++.=++.|..|+.-
T Consensus 82 aKdETI~~lk~EN~fLKeAl~s~QE-------~y~ed~kTI~~L~~q 121 (126)
T PF13118_consen 82 AKDETIEALKNENRFLKEALYSMQE-------LYEEDRKTIELLREQ 121 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHH
Confidence 3444555677788888887777765 555556666666643
No 355
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.71 E-value=3.6e+02 Score=26.03 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELT 125 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~ 125 (168)
.+.+......|+..|..++...+++...+..|...+..++..|+.+..
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777778888887777777777777777777666665543
No 356
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=3.6e+02 Score=27.89 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
+|+.++.+...........|..+..++....+|-.+|+++|
T Consensus 455 qls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 455 QLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33444443333333333333333333333333333333333
No 357
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=32.64 E-value=1.9e+02 Score=20.92 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
.+|..|..+|..-+++...|..-...|+.+|..... ++..|..+...++..
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~-------LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTE-------LNKKLQDQLLNLQRS 55 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 455556666666665555555555666666655554 555666665555553
No 358
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.57 E-value=3.7e+02 Score=24.09 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Q 035677 47 RELEAKKLRRVLASRQYSQKYRLKQL-HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELT 125 (168)
Q Consensus 47 ~~~D~Kr~KRilaNReSA~RSR~RK~-~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~ 125 (168)
...+.+..|.-+.+..++.+++-..+ +-+-++-.++..|..+-..+..+|..+......+...-.+|...+..+....-
T Consensus 21 ~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 21 EIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Q 035677 126 ---FKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 126 ---lkda~~e~L~~Ev~rLk~~~~ 146 (168)
+.-.-.+.+.+||++|-...+
T Consensus 101 ~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 101 EFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHH
No 359
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=32.38 E-value=1.9e+02 Score=20.62 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
|...|..|-.|..+|..++...+++...+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788787777777776666555543
No 360
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=32.31 E-value=4.7e+02 Score=25.29 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
|+.-++||..+|..|..-+..|... +-.+|++=+..|+.+.-|+ -.|.-||..||.+++
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~-------------~~kel~kl~~dleeek~mr----~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKD-------------HGKELEKLRKDLEEEKTMR----SNLEMEIEKLKKAVL 625 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHhh
Confidence 4567888888888777655544432 2234444444455444443 345667777776654
No 361
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.20 E-value=1.7e+02 Score=20.06 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
.+..++.++..++.+|..|..++.
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 362
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.04 E-value=1.7e+02 Score=27.97 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
++|-..|..|..+|.-|..++..+.-.|..+..||.-|+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~ 84 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL 84 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh
Confidence 345556666777776667777777777777776766554
No 363
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.04 E-value=4.1e+02 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
..|..--.+|.+.+..|+++...|.+.-..|+.+.
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333333334444444444444444444444333
No 364
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.96 E-value=4.5e+02 Score=24.95 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKR 136 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~ 136 (168)
-++||.-|..+|.+-.+ .++...+.+..+....-.+|+....+...-...-.+=-.+|+.| +.....|+.
T Consensus 204 ~la~r~~a~q~r~~ela---~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~l-------Et~q~~leq 273 (499)
T COG4372 204 NLATRANAAQARTEELA---RRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRL-------ETAQARLEQ 273 (499)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 46677777777766443 23334444444444444444433332222111111111223333 335666777
Q ss_pred HHHHHHHHHHHHH
Q 035677 137 ERQILKQLCIMYN 149 (168)
Q Consensus 137 Ev~rLk~~~~~~~ 149 (168)
||.+|-..|+.+.
T Consensus 274 eva~le~yyQ~y~ 286 (499)
T COG4372 274 EVAQLEAYYQAYV 286 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776643
No 365
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.51 E-value=1.5e+02 Score=24.74 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 68 RLKQLHYIMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 68 R~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
.+..++.+.+|+.+|..|+.+..++...+..|-
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999998887766666665554
No 366
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.42 E-value=2.2e+02 Score=21.13 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 73 HYIMQLETEVKAL--QAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 73 ~yi~eLE~kV~~L--q~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
..++.+|.++.+| ..+...|.-.|+.+.-+...|...-..+...+.-|
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666 45555566666666555555555555555555444
No 367
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=31.22 E-value=2.6e+02 Score=21.89 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
+|..|...+.+|.+++..|+++|..|+
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 368
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.10 E-value=3.2e+02 Score=22.87 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENG 111 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~ 111 (168)
.|+.++..|+..|..+...++..+.+...|..+..
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333333333
No 369
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=31.01 E-value=3.2e+02 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
++.+|..+..|..+...|..++....
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~ 72 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVS 72 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 370
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.99 E-value=7.2e+02 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 94 PRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 94 ~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
.++..+..+...+..+-..|+.++..+
T Consensus 376 eeleeleeEleelEeeLeeLqeqLael 402 (1486)
T PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334443333333
No 371
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=30.90 E-value=2.2e+02 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~ 97 (168)
+.++..|+..+..|..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENE 32 (389)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 372
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.74 E-value=3.3e+02 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.508 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l 96 (168)
.|+..|+.++..|+.+...|..++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 373
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=30.58 E-value=2.9e+02 Score=22.30 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 65 QKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 65 ~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..++..=+..|.+|...+..-+.+...+...|..+.. .|......|+.....+.....=..+..+.|++||+.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3445555566777777777777666666666655443 3444555566666555555555556788888888877654
No 374
>PRK10963 hypothetical protein; Provisional
Probab=30.52 E-value=3.2e+02 Score=22.70 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 035677 96 IKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYE 132 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e 132 (168)
|++.+.+-..|+.+|..|+.+|..|...+.--|.+.+
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~ 75 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFY 75 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444443333
No 375
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.47 E-value=2.7e+02 Score=21.95 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHHH
Q 035677 60 SRQYSQKYRLKQLHYIMQLETEV--KALQAEVAIMSPRIKY---------------------ADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 60 NReSA~RSR~RK~~yi~eLE~kV--~~Lq~En~~L~~~l~~---------------------l~~~~~~L~~EN~~Lk~r 116 (168)
+....-..+++++..+.+--.-| .+|+.+|..|..+|.. +.+....+..++..++..
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~ 99 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQE 99 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556665555443333 5566777777666643 233445566666666666
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 117 LSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 117 L~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
|........-.+.....++.|...++....-
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555556666666555544
No 376
>PLN02678 seryl-tRNA synthetase
Probab=30.36 E-value=2.8e+02 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~ 98 (168)
++..|+.+-..++.+|..
T Consensus 48 ~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 48 ELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 377
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=30.23 E-value=1.9e+02 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~ 97 (168)
|+.++..|+.++..+..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQK 46 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 378
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.17 E-value=5.1e+02 Score=27.80 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQ 139 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~ 139 (168)
.|...-..+.....++...+......+....++-..++..|.++.++..-.......+..|.+
T Consensus 511 ~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 511 ILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444443
No 379
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=30.09 E-value=2.1e+02 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
.|+..+..++.++..|..++..+..+...+..+...|+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433
No 380
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.89 E-value=2.7e+02 Score=21.68 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 60 SRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 60 NReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l 96 (168)
.-........+=..||.+|+..+..+..+.......+
T Consensus 49 e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 49 EIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555666677888888888888888888777764
No 381
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.76 E-value=2.3e+02 Score=24.71 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRI 96 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l 96 (168)
.++..|+.|...+...+
T Consensus 64 ~~~~~L~~ev~~~~~~~ 80 (247)
T COG3879 64 KKVNTLAAEVEDLENKL 80 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 382
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.74 E-value=6.9e+02 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 61 RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 61 ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
++.+.+-=++|...+.+|++.-..|..+...+...|..|++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777776666666666555555555444
No 383
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.70 E-value=5.3e+02 Score=25.94 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVA---IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~---~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..+|+.+|+....++..+.+ +...-+..|+.+...|.+++..+. .|......-+.+|+.|..+.++-..+
T Consensus 249 qlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~----~l~~~~~~LELeN~~l~tkL~rwE~~ 321 (716)
T KOG4593|consen 249 QLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE----KLQSTLLGLELENEDLLTKLQRWERA 321 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHH
No 384
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.61 E-value=5.7e+02 Score=25.40 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.+++.+|..|+.+...-..+|..++++...|......|..|+..+..
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777666777777665543
No 385
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.49 E-value=3.3e+02 Score=22.59 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
.-|++-++.||.+|...+.-+.+....|...+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~ 95 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQA 95 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888877777666655443
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.99 E-value=5.9e+02 Score=25.39 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFK-EAQYEELKRERQIL 141 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lk-da~~e~L~~Ev~rL 141 (168)
..|++|+.+...++.+..++......++.....|..+-..|+.+-..+...+.-. +-..+.+++|++.+
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~ 584 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESI 584 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 387
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=2.8e+02 Score=21.59 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAE 88 (168)
Q Consensus 75 i~eLE~kV~~Lq~E 88 (168)
+++|+.++..|+..
T Consensus 72 ~~eL~er~E~Le~r 85 (119)
T COG1382 72 VDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 388
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.66 E-value=2.2e+02 Score=23.32 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
|..++..++.|+.+|..-|..-+.++
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aKer~~ 59 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAKERHC 59 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444445544444444333
No 389
>COG5293 Predicted ATPase [General function prediction only]
Probab=28.63 E-value=5.5e+02 Score=24.93 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=58.8
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 54 LRRVLASRQYSQKYRLKQLH-YIMQLETEVKALQAEVAIMS---------PRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 54 ~KRilaNReSA~RSR~RK~~-yi~eLE~kV~~Lq~En~~L~---------~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
-++|..+|-+=-.+...+.+ -+-+++.+...|-.+.++.. ..++.+.++...++.|-.++.-|++.+.+-
T Consensus 329 ~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 329 NRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 46788999887777766543 34455555555555544432 355678888999999999999999999887
Q ss_pred hhHHHHHHHHHHHHH
Q 035677 124 LTFKEAQYEELKRER 138 (168)
Q Consensus 124 ~~lkda~~e~L~~Ev 138 (168)
..+.+-+.+ |+.|+
T Consensus 409 ~~~~~~i~~-lkhe~ 422 (591)
T COG5293 409 HALDQYIGT-LKHEC 422 (591)
T ss_pred HHHHHHHHH-HHHHH
Confidence 777776554 55565
No 390
>PHA03011 hypothetical protein; Provisional
Probab=28.61 E-value=2.8e+02 Score=21.48 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
...+-....+|..+...|..++..+..|-+.|-+-++.-.. +.--|++||.+||.
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d-------~I~~LraeIDkLK~ 113 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDD-------EIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-------HHHHHHHHHHHHHH
Confidence 34444445555556666666666666665555555544433 44456666666664
No 391
>PHA03161 hypothetical protein; Provisional
Probab=28.60 E-value=3.2e+02 Score=22.19 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
...++...|..|..++.....++..|-.=+..=-..-..|..++..|. +.|.-|+++|.
T Consensus 55 ~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLk----------eel~~ELe~l~ 113 (150)
T PHA03161 55 KQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELK----------EDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHh
Confidence 344566666666666666666665554422222223344555554443 34555555554
No 392
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=28.58 E-value=1.6e+02 Score=20.30 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAI 91 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~ 91 (168)
|..+|+.|..|+.+-+.
T Consensus 5 v~s~e~~i~FLq~eH~~ 21 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQ 21 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566777777766443
No 393
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=28.38 E-value=1.7e+02 Score=26.50 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 035677 54 LRRVLASRQYSQKYRLKQLHYI 75 (168)
Q Consensus 54 ~KRilaNReSA~RSR~RK~~yi 75 (168)
-+++|.+|.-.=-.=-||+..+
T Consensus 124 ~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 124 ERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677654433333444444
No 394
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.35 E-value=2e+02 Score=28.64 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
-.+-+||.+-+.|+.|++++..+|..+++....-..|-..||..+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 356789999999999999999888888765544444444555444
No 395
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.33 E-value=2.6e+02 Score=21.04 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 035677 105 LLRAENGSM 113 (168)
Q Consensus 105 ~L~~EN~~L 113 (168)
.+..+|..|
T Consensus 61 ~~~~e~~~L 69 (117)
T COG2919 61 AQQAELEKL 69 (117)
T ss_pred HHHHHHHHH
Confidence 333333333
No 396
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.19 E-value=3.7e+02 Score=24.41 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
.+.-+.+...+.+.+..-+.+++.++..+..+......+..+--..+..-..-..+|+|+. .|+.||..|
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~-kLk~EI~qM 347 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALT-KLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHHHHHHh
No 397
>PLN02939 transferase, transferring glycosyl groups
Probab=27.92 E-value=6.1e+02 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 100 DCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 100 ~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
-.+...|+.||..||.-+..|...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666666776666666655443
No 398
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=27.91 E-value=3.1e+02 Score=24.78 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhhHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q 035677 50 EAKKLRRVLASRQYSQKYRL----------------------KQLHYIMQLETEVKALQAEVAIM-----------SPRI 96 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~----------------------RK~~yi~eLE~kV~~Lq~En~~L-----------~~~l 96 (168)
|.+++|-+|.=|--+--|=+ +.-.-+.....++..|.+.-... ...+
T Consensus 138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~~f~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~ 217 (307)
T PF15112_consen 138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLNEFRNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESET 217 (307)
T ss_pred cHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhcc
Confidence 99999999887765543321 11122344556666666432222 2233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhh----hhh-----------hhHHH------HHHHHHHHHHHHHHHHHHH
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAF----SGE-----------LTFKE------AQYEELKRERQILKQLCIM 147 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l----~q~-----------~~lkd------a~~e~L~~Ev~rLk~~~~~ 147 (168)
..+-....++.-|...|+.+|.+| +.+ ..+++ .+.+.|..|++.|..+...
T Consensus 218 ~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k 289 (307)
T PF15112_consen 218 DVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTK 289 (307)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 444556667778888888888776 111 11222 3456788899888888654
No 399
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.81 E-value=5.7e+02 Score=24.81 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQN--------SLLRAENGSMKQKLSA-FSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~--------~~L~~EN~~Lk~rL~~-l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
..|+.++-.+|..|..++..++.+......+. .....+-..+++.|.+ |.+...+++.--..=-+||++==
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l 490 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKL 490 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhh
Q 035677 143 QLCIMYNQQQEQPKLVNNLNQRFN 166 (168)
Q Consensus 143 ~~~~~~~q~~~~~~~~~~~~~~~~ 166 (168)
...+...=.+.-...-+-+|-+||
T Consensus 491 ~~~qi~kle~siq~nKtiqn~kfn 514 (531)
T PF15450_consen 491 ATNQIMKLENSIQTNKTIQNLKFN 514 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
No 400
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.76 E-value=4.4e+02 Score=23.46 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIM 92 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L 92 (168)
+.-+.|+|.+...-+..|+.|
T Consensus 83 k~~l~evEekyrkAMv~naQL 103 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQL 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445677777776555555543
No 401
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=27.64 E-value=1e+02 Score=23.59 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
|-.+...|+.||.-|.-+|..|-
T Consensus 77 lkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666665554
No 402
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.61 E-value=3.7e+02 Score=22.58 Aligned_cols=94 Identities=24% Similarity=0.263 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 035677 61 RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYAD----CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKR 136 (168)
Q Consensus 61 ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~----~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~ 136 (168)
|--+-=.|-|.++||.-|-+.. ...-+..-|+.+. +++..| ---..++.+|-+ .....+-+.+++.=.+
T Consensus 72 ri~~~~arrRQlQyIGKlmR~~-----DvepI~~~Ldkl~~~~~q~~a~l-HklE~~RdrLia-~GD~Alt~~l~~~P~a 144 (187)
T COG3028 72 RIKSEIARRRQLQYIGKLMRDR-----DVEPIRAALDKLRNRHNQQVALL-HKLEQLRDRLIA-EGDGALTEFLNQYPDA 144 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----ChHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHh-cCchHHHHHHHHCCcc
Confidence 3333446778999999998775 2223333333332 222222 223455666532 2356777788888889
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh
Q 035677 137 ERQILKQLCIMYNQQQEQPKLVNNL 161 (168)
Q Consensus 137 Ev~rLk~~~~~~~q~~~~~~~~~~~ 161 (168)
.+++||.++-.-+-.+++-|-|.+.
T Consensus 145 Drq~LR~LvRna~kE~a~NKPPks~ 169 (187)
T COG3028 145 DRQQLRTLIRNAKKEQAQNKPPKSF 169 (187)
T ss_pred cHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999987633334444444443
No 403
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.51 E-value=56 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+-|++|+.++..|+.+...|..+|+..+
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhh
Confidence 3567777777777766666555555444
No 404
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=27.39 E-value=5.7e+02 Score=24.69 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHhHHHHHHHHHHHHHHhhhhhh---
Q 035677 55 RRVLASRQYSQKYRL--KQLHYIMQLETEVKALQAEV--AIMSPRIKYAD----CQNSLLRAENGSMKQKLSAFSGE--- 123 (168)
Q Consensus 55 KRilaNReSA~RSR~--RK~~yi~eLE~kV~~Lq~En--~~L~~~l~~l~----~~~~~L~~EN~~Lk~rL~~l~q~--- 123 (168)
+|=..++.++.+|.+ |=+.--.=|+.+|..|+.-- ..|..++..+. .+-.....+...-+.|+-.++-+
T Consensus 170 ~~d~~e~~~~kdSQlkvrlqe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn 249 (554)
T KOG4677|consen 170 YRDYSEDWSPKDSQLKVRLQEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRN 249 (554)
T ss_pred HhhHhhhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 555788888888843 22223333555555555331 12223333222 12222222333444444443332
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 124 ----LTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 124 ----~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.++..-..-..++||.-++..++-
T Consensus 250 ~~E~~~lA~r~l~~~kKe~de~k~~~~l 277 (554)
T KOG4677|consen 250 ELEVRQLALRHLIHFKKEIDEQKLLLDL 277 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444556777777766654
No 405
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.37 E-value=3.8e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.-...|+++|..|..+-.+...- ......+...+..|...+...|.+++
T Consensus 41 ~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33456777777776665543221 22223334444455555555555444
No 406
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.94 E-value=6.9e+02 Score=26.34 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 035677 100 DCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 100 ~~~~~~L~~EN~~Lk~rL 117 (168)
+.+...+..++..++..+
T Consensus 179 qae~~~l~~~~~~l~~~l 196 (1109)
T PRK10929 179 QAESAALKALVDELELAQ 196 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 407
>PRK00295 hypothetical protein; Provisional
Probab=26.74 E-value=2.2e+02 Score=19.64 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSP 94 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~ 94 (168)
+|.++..|+...+-...
T Consensus 3 ~e~Ri~~LE~kla~qE~ 19 (68)
T PRK00295 3 LEERVTELESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555544443333
No 408
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.71 E-value=3.9e+02 Score=22.51 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
.+..||.+|..|+.....+-..+..-++++-.+..+-..|+++|.+|...
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHH
Confidence 45677777777776666555555555556677777778888888877654
No 409
>PRK10869 recombination and repair protein; Provisional
Probab=26.65 E-value=3.4e+02 Score=25.74 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHH
Q 035677 47 RELEAKKLRRVLA 59 (168)
Q Consensus 47 ~~~D~Kr~KRila 59 (168)
..++|...+.+|-
T Consensus 135 ~ll~~~~~~~lLD 147 (553)
T PRK10869 135 LLLKPEHQKTLLD 147 (553)
T ss_pred HhcCHHHHHHHHH
Confidence 4467777666665
No 410
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=26.64 E-value=1.9e+02 Score=22.09 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQ 139 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~ 139 (168)
..+...++.....+.. .+|..|+++|.. .+.++|.+||+
T Consensus 65 ~~Q~k~Ye~a~~~~~~--~~lqkRle~l~~------eE~~~L~~eie 103 (104)
T PF11460_consen 65 MQQRKDYEEAVDQLTN--EELQKRLEELSP------EELEALQAEIE 103 (104)
T ss_pred HHHHHHHHHHHHHHhH--HHHHHHHHhCCH------HHHHHHHHHhc
Confidence 3444555555555654 488899988875 35566666664
No 411
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=5.2e+02 Score=23.90 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHH
Q 035677 57 VLASRQYSQKYRLKQLH-----YIMQLETEVKALQAEVAIMSPRIKYADCQNSL----------------LRAENGSMKQ 115 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~-----yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~----------------L~~EN~~Lk~ 115 (168)
-.-+|..|-.+-++.-. =..+|+..+..|+.+...|...++.|...-.+ ...+-...|+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq 304 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQ 304 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHH
Confidence 44466666666555432 23455556666666666666555555332211 1111233467
Q ss_pred HHhhhhhhhhHHHHHH
Q 035677 116 KLSAFSGELTFKEAQY 131 (168)
Q Consensus 116 rL~~l~q~~~lkda~~ 131 (168)
-|.....+..+.|+++
T Consensus 305 ~l~~~A~d~aieD~i~ 320 (365)
T KOG2391|consen 305 ILECYALDLAIEDAIY 320 (365)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 7777777777777665
No 412
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.30 E-value=4.1e+02 Score=22.60 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+.-|+.+|+.+.........+|...+.-.
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~ 107 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENR 107 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 34566677776666666666655544433
No 413
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.28 E-value=2.6e+02 Score=29.33 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
-+|.-+..|...-.++...++.|+.+...|.+++.+||+||.+
T Consensus 1009 k~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1009 KLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4555566666677778888899999999999999999999844
No 414
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.17 E-value=2e+02 Score=18.99 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSP 94 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~ 94 (168)
.|..+|..|+.+...|..
T Consensus 3 aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 415
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.03 E-value=1.3e+02 Score=21.84 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 035677 107 RAENGSMKQKLS 118 (168)
Q Consensus 107 ~~EN~~Lk~rL~ 118 (168)
..||..|+.+|+
T Consensus 6 ~eEn~~Lk~eiq 17 (76)
T PF07334_consen 6 QEENARLKEEIQ 17 (76)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 416
>PRK14140 heat shock protein GrpE; Provisional
Probab=26.00 E-value=3.9e+02 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l 96 (168)
|++|+.++..|+.+...|..++
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~ 60 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERY 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 417
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.96 E-value=6.1e+02 Score=24.76 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 57 VLASRQYSQKYRLKQ--------LHYIMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 57 ilaNReSA~RSR~RK--------~~yi~eLE~kV~~Lq~En~~L~~~l 96 (168)
+.-|=++|-++++++ +--|+.-|.+++.|+.....|..+|
T Consensus 313 k~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 313 KYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344556666665543 2334555566666666666666554
No 418
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.91 E-value=6e+02 Score=24.40 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE----LTFKEAQYEELKRERQIL 141 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~----~~lkda~~e~L~~Ev~rL 141 (168)
.|++..+|+.....+..++..+.+.+..|.......+.+|..++.. ..-+|.....|.+-+.-|
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 419
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=25.84 E-value=7.1e+02 Score=25.25 Aligned_cols=71 Identities=25% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.+|-.-|--|+.++..|...+.. ...-...|.-+|..|+.++.+-..+.-.-+.-...|..|++.++..+.
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEn-------k~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVEN-------KNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555544443 333334466788888888877666666667777888888888877543
No 420
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.71 E-value=5.9e+02 Score=24.23 Aligned_cols=62 Identities=21% Similarity=0.129 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhhhh
Q 035677 60 SRQYSQKYRLKQ-----LHYIMQLETEVKALQAEVAIMSPRIKYADCQ-----NSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 60 NReSA~RSR~RK-----~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~-----~~~L~~EN~~Lk~rL~~l~ 121 (168)
-|-||++-.+|- .+++.++|..++.|+.||..|..+....... -..+..||..++......+
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~ 101 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRE 101 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554442 4677889999999999999887765443222 2344556655554443333
No 421
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.63 E-value=7.5e+02 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 82 VKALQAEVAIMSPRIK 97 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~ 97 (168)
+-.|+.-|-.|..++.
T Consensus 429 l~sLqSlN~~Lq~ql~ 444 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQ 444 (861)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 422
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=25.61 E-value=89 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIM 92 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L 92 (168)
.+.|||.+|..|..-|..|
T Consensus 19 rv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eHHHHHHHHHHHHHHhHHH
Confidence 4678898998888877765
No 423
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.59 E-value=2e+02 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
++.|+.++..|..++..|..++..++
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444455444444444444444333
No 424
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=25.16 E-value=1.8e+02 Score=22.24 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 035677 103 NSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 103 ~~~L~~EN~~Lk~rL~~l 120 (168)
+..|..||+-||-+++-|
T Consensus 81 ~~~LeEENNlLklKievL 98 (108)
T cd07429 81 NQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555554433
No 425
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.96 E-value=3.7e+02 Score=21.92 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhh
Q 035677 108 AENGSMKQKLSAFSG 122 (168)
Q Consensus 108 ~EN~~Lk~rL~~l~q 122 (168)
.|-.++..+|..|++
T Consensus 125 ~e~ee~~~~l~~le~ 139 (175)
T PRK13182 125 REMEEMLERLQKLEA 139 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555553
No 426
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.95 E-value=5.2e+02 Score=23.34 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD------------CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~------------~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
+.+|-.++..++.++.-|..++.... ++...|..+-..++.++..|+...+----+-+.+..|.+-.|
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYK 167 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444321 233344444445555555555444333345556666666666
Q ss_pred HHHHHHHh
Q 035677 143 QLCIMYNQ 150 (168)
Q Consensus 143 ~~~~~~~q 150 (168)
.-++--|+
T Consensus 168 ~K~~RLN~ 175 (319)
T PF09789_consen 168 CKAHRLNH 175 (319)
T ss_pred HHHHHHHH
Confidence 55554444
No 427
>PRK15396 murein lipoprotein; Provisional
Probab=24.66 E-value=2.7e+02 Score=20.03 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSP 94 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~ 94 (168)
+|..+|+.|..+...++.
T Consensus 29 ~LssqV~~L~~kvdql~~ 46 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSN 46 (78)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 428
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.59 E-value=6.3e+02 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 035677 129 AQYEELKRERQILKQLCIMYNQQQEQPKL 157 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~~~~~q~~~~~~~ 157 (168)
+...-|+.||.|||.-.-. -|-+.+.++
T Consensus 253 ~hi~~l~~EveRlrt~l~~-Aqk~~~ek~ 280 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSR-AQKSYQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5577889999999976543 333444444
No 429
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.41 E-value=3.8e+02 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
..+|..|+.+|..|...+..+..+...|.....+|+...
T Consensus 95 ~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~ 133 (158)
T PF09744_consen 95 QSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEY 133 (158)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHH
Confidence 334444444444444333333333333333333333333
No 430
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.38 E-value=1.5e+02 Score=24.20 Aligned_cols=13 Identities=46% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 035677 133 ELKRERQILKQLC 145 (168)
Q Consensus 133 ~L~~Ev~rLk~~~ 145 (168)
.|+.|+.-||+=.
T Consensus 35 RLkDE~RDLKqEl 47 (166)
T PF04880_consen 35 RLKDELRDLKQEL 47 (166)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 431
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.34 E-value=2.6e+02 Score=19.70 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
........|+..+..-..+|..|+.++..|.++
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334445556666666667777777777777764
No 432
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.33 E-value=2.6e+02 Score=19.64 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQ--AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF---SGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 74 yi~eLE~kV~~Lq--~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l---~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.+..|+..+..|- ..+.+|..+|..+...+..|..+-..+=.+|..+ .......-...+.|..|...+=.-+
T Consensus 11 ~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~f 87 (102)
T PF14523_consen 11 NVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEF 87 (102)
T ss_dssp HHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 3566778888888887777777766666666665 2222333345556666654444333
No 433
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.24 E-value=3.5e+02 Score=21.13 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 105 LLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.|..-.++|.+||+.+....--..+.++..+.||.-++
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~ 95 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVR 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444555554444443
No 434
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.23 E-value=5.3e+02 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=6.7
Q ss_pred cccCCCCCCCCCCCC
Q 035677 7 KFGNGQGLPPIPLPS 21 (168)
Q Consensus 7 ~~~~~~~s~~~p~~~ 21 (168)
-||+.+.-+...-||
T Consensus 9 D~~~~~~~a~~t~~~ 23 (330)
T KOG2991|consen 9 DFGGDDSAANATRAS 23 (330)
T ss_pred ccCCccchhhcccCC
Confidence 355533334444444
No 435
>PF13514 AAA_27: AAA domain
Probab=24.19 E-value=7.9e+02 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677 83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE 128 (168)
Q Consensus 83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd 128 (168)
..|..+...+..++..+..+...|..+-..++.+|..|.....+.+
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~ 937 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAE 937 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 5566677777777777888888888777888888887766544433
No 436
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.06 E-value=6.4e+02 Score=24.41 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
.+..+...+...|..|+.+ |.+.-.-...+|..|..+..--.-.-..-+.||+.||.
T Consensus 459 ~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444432 33333455566666665532222223344667888773
No 437
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.94 E-value=4.1e+02 Score=21.92 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..++..++..+..|..++..|+.+...+.. -++.|..-+.|=|.+...
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~e-------Dy~~Li~Im~rark~~~~ 157 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEE-------DYRALIVIMNRARRMAIL 157 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcchh
Confidence 344555555555555555555555544443 566666666666666543
No 438
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=23.88 E-value=5.4e+02 Score=23.14 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=48.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHh-hhhhhhhHHHHH
Q 035677 59 ASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN-------GSMKQKLS-AFSGELTFKEAQ 130 (168)
Q Consensus 59 aNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN-------~~Lk~rL~-~l~q~~~lkda~ 130 (168)
+|.+.---++.-=-+.++.||....++......|...|..|++-|..|..-. ..+-++|. +++..+.+---+
T Consensus 77 ~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 77 RNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444333444444556778888888888888888888888888887775433 22344553 344444433222
Q ss_pred --HHHHHHHHHHHHH
Q 035677 131 --YEELKRERQILKQ 143 (168)
Q Consensus 131 --~e~L~~Ev~rLk~ 143 (168)
-+.|-.+|+|||-
T Consensus 157 dEke~llesvqRLkd 171 (333)
T KOG1853|consen 157 DEKEVLLESVQRLKD 171 (333)
T ss_pred hHHHHHHHHHHHHHH
Confidence 2234445555554
No 439
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.83 E-value=4.4e+02 Score=22.70 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 035677 132 EELKRERQILKQLC 145 (168)
Q Consensus 132 e~L~~Ev~rLk~~~ 145 (168)
-.+..||..||...
T Consensus 177 ~kId~Ev~~lk~qi 190 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQI 190 (220)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777544
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=7.4e+02 Score=24.70 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----------hhhhhhhHHHHHHHHH
Q 035677 66 KYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS-----------AFSGELTFKEAQYEEL 134 (168)
Q Consensus 66 RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~-----------~l~q~~~lkda~~e~L 134 (168)
+-+....|-|.+++.+...+..-...|..++.........|..-.+.|.++-. .+.++.+.--.+..+|
T Consensus 595 ~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L 674 (741)
T KOG4460|consen 595 DQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHL 674 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHH
Confidence 33445556677777777777776677777777666666666666666654432 2344455555666677
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 035677 135 KRERQILKQLCIMYNQQQEQPKLV 158 (168)
Q Consensus 135 ~~Ev~rLk~~~~~~~q~~~~~~~~ 158 (168)
..=|+.+|....- |+++.-+.+
T Consensus 675 ~~~iET~~~~~~K--Q~~H~~~v~ 696 (741)
T KOG4460|consen 675 GNAIETVTMKKDK--QQQHMEKVL 696 (741)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 7777777776654 333444443
No 441
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.68 E-value=2.5e+02 Score=19.28 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 035677 131 YEELKRERQILK 142 (168)
Q Consensus 131 ~e~L~~Ev~rLk 142 (168)
+..|..||.+|+
T Consensus 41 n~eL~~ei~~L~ 52 (61)
T PF08826_consen 41 NRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 442
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.63 E-value=5.5e+02 Score=23.15 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 035677 124 LTFKEAQYEELKRERQIL 141 (168)
Q Consensus 124 ~~lkda~~e~L~~Ev~rL 141 (168)
..+-++.....++-|++|
T Consensus 97 v~~lEgQl~s~Kkqie~L 114 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 443
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.43 E-value=6.4e+02 Score=23.90 Aligned_cols=8 Identities=13% Similarity=0.517 Sum_probs=3.1
Q ss_pred HHHhhhhh
Q 035677 115 QKLSAFSG 122 (168)
Q Consensus 115 ~rL~~l~q 122 (168)
.++..|+.
T Consensus 139 e~~a~lt~ 146 (514)
T TIGR03319 139 ERISGLTQ 146 (514)
T ss_pred HHHhCCCH
Confidence 33334443
No 444
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.34 E-value=1.7e+02 Score=23.20 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
|-|.+|+++|+...+.|..+ +...-++++++....-.
T Consensus 1 M~k~efL~~L~~~L~~lp~~--e~~e~l~~Y~e~f~d~~ 37 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEE--EREEILEYYEEYFDDAG 37 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhh
Confidence 45899999999999877543 44445667766665544
No 445
>PRK11020 hypothetical protein; Provisional
Probab=23.31 E-value=3.7e+02 Score=21.05 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 035677 85 LQAEVAIMSPRIKYADCQNSL 105 (168)
Q Consensus 85 Lq~En~~L~~~l~~l~~~~~~ 105 (168)
+..|...|+.+++.+.+....
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaa 23 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAA 23 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666555554433
No 446
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=23.25 E-value=4e+02 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 126 FKEAQYEELKRERQILKQL 144 (168)
Q Consensus 126 lkda~~e~L~~Ev~rLk~~ 144 (168)
+-+..-+.+.+|+.||+.+
T Consensus 261 ~~~~~~~~~~~e~~~~~~~ 279 (775)
T TIGR00763 261 LPEEVKKVIEKELTKLSLL 279 (775)
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4445566777888888764
No 447
>PHA03011 hypothetical protein; Provisional
Probab=23.20 E-value=3.6e+02 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhh
Q 035677 100 DCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 100 ~~~~~~L~~EN~~Lk~rL~~l 120 (168)
..+-.-|++|-..||..+..+
T Consensus 98 ~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 98 DDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 345566666666666665543
No 448
>PRK00106 hypothetical protein; Provisional
Probab=23.16 E-value=6.8e+02 Score=24.10 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 94 PRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 94 ~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
.++.....+...+..+...--.++..|+.+ .-++.+.+.++.|+
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~a~lt~~-eak~~l~~~~~~~~ 182 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERVAALSQA-EAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHH
Confidence 333333333344433333333344444432 22333444444443
No 449
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=23.01 E-value=3.5e+02 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-.|+.+...|-.+|.+||-.+.+..
T Consensus 108 ~~Le~~Kt~ll~qn~elKr~~~E~~ 132 (373)
T KOG0561|consen 108 HQLEGHKTELLPQNGELKRLKLEED 132 (373)
T ss_pred HHHHhcccccccccchHHHHHhhhc
Confidence 3466677777788888886665544
No 450
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.97 E-value=2.4e+02 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=8.0
Q ss_pred CCCCCCCccccCCCCC
Q 035677 15 PPIPLPSSFSRKNTGD 30 (168)
Q Consensus 15 ~~~p~~~~~sr~gsG~ 30 (168)
|+.--|.++.-+|.|+
T Consensus 32 p~~~d~~Sl~V~~~g~ 47 (104)
T PF13600_consen 32 PPSLDPDSLRVSGEGG 47 (104)
T ss_pred CcccCCCcEEEEecCC
Confidence 3333444565566654
No 451
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.94 E-value=6.8e+02 Score=23.99 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKY---ADC----QNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~---l~~----~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-+..||.++..|+.+...|..++.. +.. ....|..+-.+++.+|..+.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECE 618 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888777777642 111 23444445555555555444
No 452
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=22.49 E-value=1.7e+02 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 86 QAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 86 q~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
+.+...|...+..+..++..|..|+.+|+..+..
T Consensus 111 E~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 111 EKDYESLKRQLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 3333444444444444444555555555544443
No 453
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=22.19 E-value=6.6e+02 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
++.--+..||.+--.|.+|+++|.-++..++.+.
T Consensus 164 qellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 164 QELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 3444557899999999999999988888776443
No 454
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=22.19 E-value=29 Score=34.69 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
+...-+-+++++.--...+..+++++..|+.+...+...+..+......+..+..++..+|..+...
T Consensus 586 lq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~ 652 (859)
T PF01576_consen 586 LQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQ 652 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445666777777666677788888888888888888888877777777777777777777766544
No 455
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=21.80 E-value=3.1e+02 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF 126 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l 126 (168)
||-.+|..|.-|+.-|.-++...++-...|...+.+|-..|..+.+++..
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777776666666666555554555555555555555444444433
No 456
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=21.79 E-value=30 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 035677 105 LLRAENGSMKQKLSAFS 121 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~ 121 (168)
.|..+-..|+.++..|+
T Consensus 24 ~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 24 SLQSELEELKEELEELE 40 (118)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 457
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.77 E-value=4.3e+02 Score=23.42 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q 035677 108 AENGSMKQKLSAF 120 (168)
Q Consensus 108 ~EN~~Lk~rL~~l 120 (168)
+|-++|..|+.-|
T Consensus 221 ae~seLq~r~~~l 233 (289)
T COG4985 221 AEKSELQKRLAQL 233 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 458
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=21.71 E-value=2.8e+02 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 131 YEELKRERQILKQLCI 146 (168)
Q Consensus 131 ~e~L~~Ev~rLk~~~~ 146 (168)
+..|..|+.|+|.++.
T Consensus 193 ~g~l~~El~rmR~Lla 208 (213)
T PF13093_consen 193 DGELEAELERMRMLLA 208 (213)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5678899999998864
No 459
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.62 E-value=9.7e+02 Score=25.29 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
+..-|++|+.++..++.+...+..........+..|..+-..|+.+|..-..+
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~e 498 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKE 498 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999998888877777777777777777777654443
No 460
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.55 E-value=9.6e+02 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~ 93 (168)
+-+..++.+....+...-|..|+.++..+..+...+.
T Consensus 841 l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666555555544444333
No 461
>PF13514 AAA_27: AAA domain
Probab=21.48 E-value=7.8e+02 Score=25.32 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=8.5
Q ss_pred hhhhhhhhhhhhhhh
Q 035677 152 QEQPKLVNNLNQRFN 166 (168)
Q Consensus 152 ~~~~~~~~~~~~~~~ 166 (168)
..+|++.+....-|.
T Consensus 976 ~~~p~vl~~As~~f~ 990 (1111)
T PF13514_consen 976 ERQPPVLARASEYFS 990 (1111)
T ss_pred HhhHHHHHHHHHHHH
Confidence 346666666555554
No 462
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.48 E-value=6.2e+02 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAE 88 (168)
Q Consensus 75 i~eLE~kV~~Lq~E 88 (168)
|.+|-.+...|+..
T Consensus 11 iae~k~e~sAlhqK 24 (389)
T KOG4687|consen 11 IAELKKEFSALHQK 24 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 463
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.42 E-value=5.6e+02 Score=22.45 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~ 108 (168)
..+.++..|+.+...|.++|...+.+...|.+
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444
No 464
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.34 E-value=3.3e+02 Score=19.83 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
+++|-..|+.|......|+..+..+..+-..-..|+..-.+||.
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rld 70 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555554
No 465
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.28 E-value=2.1e+02 Score=20.64 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKY 98 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~ 98 (168)
.|+.||..|..+|..
T Consensus 4 ei~eEn~~Lk~eiqk 18 (76)
T PF07334_consen 4 EIQEENARLKEEIQK 18 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 466
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.28 E-value=4.3e+02 Score=21.12 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 035677 106 LRAENGSMKQKL 117 (168)
Q Consensus 106 L~~EN~~Lk~rL 117 (168)
|..|...|+.+|
T Consensus 94 L~kEI~~Lr~kL 105 (143)
T PRK11546 94 VAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 467
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.24 E-value=4.8e+02 Score=21.61 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKAL---------QAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 72 ~~yi~eLE~kV~~L---------q~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
..-+.+++..+..+ +...+.|..++..+..+..+|..+-...-.+..-..-..-+..+....+..+++.|+
T Consensus 126 ~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq 205 (240)
T PF12795_consen 126 RQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQ 205 (240)
T ss_pred HHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhh
Q 035677 143 QLCIMYNQQQEQPKL 157 (168)
Q Consensus 143 ~~~~~~~q~~~~~~~ 157 (168)
.+.-...+.......
T Consensus 206 ~~ln~~R~~eae~~~ 220 (240)
T PF12795_consen 206 NLLNQKRRQEAEQAV 220 (240)
T ss_pred HHHHHHHHHHHHHHH
No 468
>PLN02320 seryl-tRNA synthetase
Probab=21.24 E-value=7.3e+02 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 035677 106 LRAENGSMKQKLSAFS 121 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~ 121 (168)
|..+-+.|+.+|..|+
T Consensus 135 l~~~~k~lk~~i~~le 150 (502)
T PLN02320 135 LVEEGKNLKEGLVTLE 150 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 469
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=21.14 E-value=34 Score=25.74 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+.+||..+..|+.+...|..++..+
T Consensus 15 ~~~LE~~l~~l~~el~~L~~~l~eL 39 (118)
T PF08286_consen 15 LSDLESELESLQSELEELKEELEEL 39 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 470
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=21.06 E-value=87 Score=23.72 Aligned_cols=20 Identities=40% Similarity=0.425 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 035677 123 ELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 123 ~~~lkda~~e~L~~Ev~rLk 142 (168)
+=+.-+|+++.|++||..|.
T Consensus 6 hWq~w~aEYe~LKEEi~~l~ 25 (99)
T PF13758_consen 6 HWQTWEAEYEGLKEEIEALP 25 (99)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34567899999999999884
No 471
>PRK11530 hypothetical protein; Provisional
Probab=20.89 E-value=2.3e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
.+|.+|..++.+|..++..|..+-..|.-+|
T Consensus 24 ~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn 54 (183)
T PRK11530 24 SEVRQMHNSVSTLNQEMTQLTQQAVAIEQQN 54 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777666666554
No 472
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.73 E-value=7e+02 Score=23.35 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
.-..+..+|..+...+.+...++.+|..|+.+...|.
T Consensus 26 cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~ 62 (508)
T PF04129_consen 26 CDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLN 62 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666555544
No 473
>PRK00736 hypothetical protein; Provisional
Probab=20.64 E-value=3e+02 Score=18.97 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAI 91 (168)
Q Consensus 78 LE~kV~~Lq~En~~ 91 (168)
++.++..|+...+-
T Consensus 3 ~e~Ri~~LE~klaf 16 (68)
T PRK00736 3 AEERLTELEIRVAE 16 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544433
No 474
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=20.60 E-value=73 Score=20.59 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHhhHHHH
Q 035677 47 RELEAKKLRRVLASRQYSQ 65 (168)
Q Consensus 47 ~~~D~Kr~KRilaNReSA~ 65 (168)
+..|++|.|-||+.|-|=+
T Consensus 5 s~~~~~krReiLsRRPSYR 23 (41)
T PF02173_consen 5 SEEDSQKRREILSRRPSYR 23 (41)
T ss_dssp ---HHHHHHHHHTTSTHHH
T ss_pred cccchHHHHHHHhhCchHH
Confidence 4579999999999998866
No 475
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.60 E-value=2.6e+02 Score=18.22 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQNSLLRAEN 110 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN 110 (168)
++..+|-.+...|.+.+..+++.......+-
T Consensus 2 Rq~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~ 32 (45)
T PF08227_consen 2 RQYSHLASQLAQLQANLADTENLLEMTSIQA 32 (45)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455566666666666665555554444443
No 476
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.57 E-value=3.5e+02 Score=19.77 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 56 RVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 56 RilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
|-+..=+...+.+..|..-|..|...+..|+.++..+...|..+
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555544433
No 477
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.56 E-value=4.2e+02 Score=21.48 Aligned_cols=33 Identities=3% Similarity=-0.101 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
-+.|++.|+..+..++.-+..|..+...+-..+
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~ 51 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQRIHKERIEYFDEL 51 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888887777765555444433
No 478
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.49 E-value=3.8e+02 Score=24.20 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
...|..+|..++..++.+..++..+......+......|..+|..|+
T Consensus 139 ~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 139 DESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 479
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.44 E-value=5.5e+02 Score=23.27 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
++..+...++.++..|...+...+++++++.. +.+.-...+.....||+.+...
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~---lQ~~C~ssI~~QkkrLk~L~~s 54 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSK---LQDKCSSSISHQKKRLKELKKS 54 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.42 E-value=1e+03 Score=25.25 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 035677 54 LRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEE 133 (168)
Q Consensus 54 ~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~ 133 (168)
++++..+=.+-.....-.+.-+++++......-.+...|...|....-....+.+++.+++.++.++.....-.--+-..
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhh
Q 035677 134 LKRERQILKQLCIMYNQQQEQPKLV----NNLNQR 164 (168)
Q Consensus 134 L~~Ev~rLk~~~~~~~q~~~~~~~~----~~~~~~ 164 (168)
|.-.|..++.-.-. +|.+=.-.+. |+|+.+
T Consensus 479 l~~~i~~~~~dl~~-~~~~L~~~~~r~v~nGi~~v 512 (1200)
T KOG0964|consen 479 LRSLIANLEEDLSR-AEKNLRATMNRSVANGIDSV 512 (1200)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhccchhhhhhHHH
No 481
>PRK11281 hypothetical protein; Provisional
Probab=20.34 E-value=1e+03 Score=25.11 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQL----ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF 126 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eL----E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l 126 (168)
++-..++-.|+.-.+.-+-+-..--..- +.+...|++|..-+..++.+.+++...-..-..-++.+.+.+..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~---- 234 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTA---- 234 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035677 127 KEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQ 163 (168)
Q Consensus 127 kda~~e~L~~Ev~rLk~~~~~~~q~~~~~~~~~~~~~ 163 (168)
..+.++.+++.|..+...+.+.+.....-.+.++
T Consensus 235 ---~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~ 268 (1113)
T PRK11281 235 ---RIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268 (1113)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 482
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.29 E-value=2.8e+02 Score=24.29 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
|++|+.++..|+.+...+..++..++.+...+..+...++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 483
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=20.28 E-value=9.1e+02 Score=24.45 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCcchhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 40 AEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 40 ~~~~~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
..+.......+++|.+-+|... |.+--..+-.|..+--.+......|..+|..|+.+-..-..|...|..-|+.
T Consensus 290 vqp~d~Le~e~~~K~q~LL~~W------REKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqD 363 (739)
T PF07111_consen 290 VQPSDPLEPEFSRKCQQLLSRW------REKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQD 363 (739)
T ss_pred CCCCCCCCchhHHHHHHHHHHH------HHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035677 120 FSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151 (168)
Q Consensus 120 l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q~ 151 (168)
=.-...+-.+....|..|..+=..+....+|+
T Consensus 364 K~AElevERv~sktLQ~ELsrAqea~~~lqqq 395 (739)
T PF07111_consen 364 KAAELEVERVGSKTLQAELSRAQEARRRLQQQ 395 (739)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 484
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.22 E-value=4.8e+02 Score=21.27 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQ 154 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~q~~~~ 154 (168)
...+...+..|+.++..+..++..+......+......=..|...|. ..+.|+.|+..|+.-...+.. --
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~--------~l~~l~~~~~~l~~el~~~~~--~D 133 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLE--------ELEELKKELKELKKELEKYSE--ND 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh--cC
Q ss_pred hhhhhhhhh
Q 035677 155 PKLVNNLNQ 163 (168)
Q Consensus 155 ~~~~~~~~~ 163 (168)
|..+..+..
T Consensus 134 p~~i~~~~~ 142 (188)
T PF03962_consen 134 PEKIEKLKE 142 (188)
T ss_pred HHHHHHHHH
No 485
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.16 E-value=8e+02 Score=23.74 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh---hhH
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE---LTF 126 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~---~~l 126 (168)
|-.-.-..|...-++-..-- .+-|.+.+.+|..|.........+++.++........+-..++..+..++.+ .++
T Consensus 2 dad~~~~~L~~eL~~le~~n--i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqv 79 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAAN--IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQV 79 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 127 KEAQYEELKRERQIL 141 (168)
Q Consensus 127 kda~~e~L~~Ev~rL 141 (168)
+.+-+..|..|++.|
T Consensus 80 q~~N~k~L~~eL~~L 94 (701)
T PF09763_consen 80 QSANQKLLLNELENL 94 (701)
T ss_pred HHHHHHHHHHHHHHH
No 486
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.16 E-value=3.9e+02 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 69 LKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 69 ~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
+....++.+|-...+.|+.+...|..++..+......+..--..|+
T Consensus 2 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 2 MESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.15 E-value=3.8e+02 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
++.|+.++..|..++..|..++..++.+......=...+--.+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.12 E-value=6.8e+02 Score=23.52 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIM-------SPRIKYADCQNSLLRAENGSMKQKLSAFS--GELTFKEAQYEELKRERQ 139 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L-------~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~--q~~~lkda~~e~L~~Ev~ 139 (168)
...|..||.++..++.+...| +++|..+..+...|..+-..++.+|.+-. ...--.-+.+|.|.-|.+
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~e 361 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSE 361 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
No 489
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.11 E-value=3e+02 Score=19.66 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+...|..++..++.+...+..+...++.++..|.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 490
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=20.05 E-value=4.3e+02 Score=20.56 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh-HHH--HHHHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELT-FKE--AQYEELKRERQI 140 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~-lkd--a~~e~L~~Ev~r 140 (168)
++.++|..++.+.......|..-+.+|-.+..+.+ ..+ ..-+.+..+|..
T Consensus 37 EI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~ 89 (131)
T PF10198_consen 37 EISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQ 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!