Query 035677
Match_columns 168
No_of_seqs 133 out of 470
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.5E-15 5.1E-20 101.7 6.9 52 52-103 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 7.1E-12 2.4E-16 85.5 8.8 57 51-107 1-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 2E-11 7E-16 82.4 8.6 55 52-106 1-55 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 7.6E-11 2.6E-15 80.7 6.9 53 49-102 7-59 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.1E-10 3.7E-15 79.2 7.3 55 52-106 1-55 (62)
6 1gd2_E Transcription factor PA 99.0 8.2E-10 2.8E-14 77.3 5.9 64 51-114 7-70 (70)
7 1ci6_A Transcription factor AT 98.9 5.3E-09 1.8E-13 71.3 7.1 56 52-107 2-57 (63)
8 1gu4_A CAAT/enhancer binding p 98.3 5.6E-06 1.9E-10 58.8 9.1 57 50-106 13-69 (78)
9 1hjb_A Ccaat/enhancer binding 98.2 8.1E-06 2.8E-10 59.1 9.3 58 49-106 12-69 (87)
10 3a5t_A Transcription factor MA 98.1 1.8E-07 6.2E-12 70.2 -2.5 50 44-93 29-78 (107)
11 2oqq_A Transcription factor HY 97.9 1.6E-05 5.4E-10 50.4 5.3 36 72-107 2-37 (42)
12 2wt7_B Transcription factor MA 97.9 0.00015 5.2E-09 52.8 10.2 70 44-120 19-88 (90)
13 2jee_A YIIU; FTSZ, septum, coi 95.9 0.14 4.8E-06 36.4 10.5 58 74-138 7-64 (81)
14 3s4r_A Vimentin; alpha-helix, 95.2 0.24 8.4E-06 35.5 9.9 64 80-143 23-91 (93)
15 3i00_A HIP-I, huntingtin-inter 94.9 0.34 1.2E-05 36.5 10.5 12 157-168 100-111 (120)
16 2w6a_A ARF GTPase-activating p 94.2 0.24 8.3E-06 33.5 7.2 41 75-115 22-62 (63)
17 3ol1_A Vimentin; structural ge 93.8 1.4 4.7E-05 32.6 11.7 75 73-147 20-108 (119)
18 3hnw_A Uncharacterized protein 91.8 1.6 5.4E-05 33.3 9.6 51 72-122 74-124 (138)
19 1skn_P DNA-binding domain of S 91.5 0.13 4.4E-06 37.4 3.0 38 44-81 54-91 (92)
20 3cvf_A Homer-3, homer protein 91.1 0.4 1.4E-05 33.9 5.2 34 108-141 20-53 (79)
21 2jee_A YIIU; FTSZ, septum, coi 90.7 3.3 0.00011 29.3 9.8 14 130-143 49-62 (81)
22 1deb_A APC protein, adenomatou 90.4 1.8 6.1E-05 28.4 7.4 44 75-118 5-48 (54)
23 3efg_A Protein SLYX homolog; x 90.4 0.84 2.9E-05 31.8 6.3 50 73-122 14-63 (78)
24 3swy_A Cyclic nucleotide-gated 90.1 1.6 5.4E-05 27.8 6.8 44 77-123 2-45 (46)
25 2oqq_A Transcription factor HY 89.7 1.6 5.5E-05 27.4 6.5 37 81-117 4-40 (42)
26 3m48_A General control protein 87.8 0.7 2.4E-05 27.7 3.7 26 75-100 2-27 (33)
27 1go4_E MAD1 (mitotic arrest de 87.4 5.3 0.00018 29.2 9.1 18 129-146 75-92 (100)
28 3swk_A Vimentin; cytoskeleton, 87.0 2.5 8.6E-05 29.7 6.9 70 75-144 2-85 (86)
29 3he5_A Synzip1; heterodimeric 86.8 4.3 0.00015 25.6 7.2 19 75-93 5-23 (49)
30 3o0z_A RHO-associated protein 86.4 11 0.00037 29.9 11.8 81 63-145 26-113 (168)
31 3s9g_A Protein hexim1; cyclin 86.4 2.4 8.3E-05 31.2 6.7 16 77-92 41-56 (104)
32 2oxj_A Hybrid alpha/beta pepti 85.9 1.7 5.8E-05 26.1 4.6 26 75-100 3-28 (34)
33 1fmh_A General control protein 85.8 2 7E-05 25.1 4.8 29 75-103 3-31 (33)
34 3swf_A CGMP-gated cation chann 85.7 2.5 8.4E-05 29.5 6.2 46 76-124 3-48 (74)
35 3a7p_A Autophagy protein 16; c 85.2 5.6 0.00019 31.2 8.7 41 104-144 71-111 (152)
36 3oja_B Anopheles plasmodium-re 85.0 12 0.00043 32.8 12.0 31 115-145 544-574 (597)
37 1ci6_A Transcription factor AT 84.8 2.8 9.6E-05 27.7 6.0 27 95-121 24-50 (63)
38 3a7o_A Autophagy protein 16; c 84.1 6.2 0.00021 27.4 7.5 48 75-122 27-74 (75)
39 3hnw_A Uncharacterized protein 83.8 11 0.00037 28.6 9.7 6 133-138 121-126 (138)
40 3c3g_A Alpha/beta peptide with 83.3 2.6 8.9E-05 25.1 4.6 26 75-100 2-27 (33)
41 3a7p_A Autophagy protein 16; c 82.7 11 0.00038 29.5 9.4 34 84-117 100-133 (152)
42 1kd8_B GABH BLL, GCN4 acid bas 82.4 2.8 9.7E-05 25.4 4.6 27 75-101 3-29 (36)
43 3c3f_A Alpha/beta peptide with 82.3 3 0.0001 25.0 4.6 26 75-100 3-28 (34)
44 1t2k_D Cyclic-AMP-dependent tr 82.3 4.8 0.00016 26.1 6.3 22 97-118 25-46 (61)
45 1go4_E MAD1 (mitotic arrest de 82.2 5.4 0.00018 29.2 7.0 22 101-122 75-96 (100)
46 2wt7_B Transcription factor MA 82.1 4.7 0.00016 28.9 6.6 38 102-146 49-86 (90)
47 3cvf_A Homer-3, homer protein 81.8 11 0.00038 26.4 8.5 47 76-122 9-55 (79)
48 3mq9_A Bone marrow stromal ant 81.5 14 0.00049 31.7 10.8 28 115-142 443-470 (471)
49 2oxj_A Hybrid alpha/beta pepti 81.0 3 0.0001 25.0 4.3 28 111-145 4-31 (34)
50 1kd8_A GABH AIV, GCN4 acid bas 81.0 2.3 7.9E-05 25.8 3.9 27 75-101 3-29 (36)
51 3m9b_A Proteasome-associated A 80.8 1.6 5.6E-05 36.7 4.3 9 133-141 86-94 (251)
52 2wq1_A General control protein 80.8 3.7 0.00013 24.5 4.6 26 75-100 2-27 (33)
53 3cve_A Homer protein homolog 1 80.3 6.9 0.00024 27.0 6.7 45 77-121 4-48 (72)
54 3oja_B Anopheles plasmodium-re 80.0 22 0.00074 31.3 11.6 11 132-142 540-550 (597)
55 1uo4_A General control protein 79.5 2.8 9.7E-05 25.1 3.9 26 75-100 3-28 (34)
56 1nkp_B MAX protein, MYC proto- 79.4 2.7 9.2E-05 28.8 4.4 35 73-121 47-81 (83)
57 2dfs_A Myosin-5A; myosin-V, in 79.2 43 0.0015 33.0 14.3 10 83-92 987-996 (1080)
58 2dfs_A Myosin-5A; myosin-V, in 78.1 30 0.001 34.1 12.9 28 89-116 986-1013(1080)
59 3qh9_A Liprin-beta-2; coiled-c 77.0 17 0.00058 25.7 9.3 52 87-138 26-77 (81)
60 2hy6_A General control protein 76.4 3.9 0.00013 24.5 3.9 27 74-100 2-28 (34)
61 3na7_A HP0958; flagellar bioge 76.3 29 0.00099 28.0 15.2 48 51-98 31-78 (256)
62 2bni_A General control protein 76.0 4.1 0.00014 24.4 3.9 28 74-101 2-29 (34)
63 3tnu_B Keratin, type II cytosk 75.8 21 0.00072 26.2 9.5 14 132-145 85-98 (129)
64 3m48_A General control protein 75.6 3.4 0.00011 24.7 3.4 28 112-146 4-31 (33)
65 2efr_A General control protein 75.5 26 0.0009 27.2 9.9 16 128-143 139-154 (155)
66 1t6f_A Geminin; coiled-coil, c 75.2 6.4 0.00022 23.9 4.6 28 87-114 7-34 (37)
67 2ve7_C Kinetochore protein NUF 75.2 2.1 7E-05 35.5 3.3 31 48-78 116-146 (250)
68 3c3g_A Alpha/beta peptide with 74.8 6 0.0002 23.6 4.3 28 111-145 3-30 (33)
69 3tnu_A Keratin, type I cytoske 74.4 23 0.00077 26.1 8.7 15 132-146 87-101 (131)
70 3c3f_A Alpha/beta peptide with 74.4 6.1 0.00021 23.6 4.3 28 111-145 4-31 (34)
71 1jnm_A Proto-oncogene C-JUN; B 74.3 4.1 0.00014 26.6 4.0 23 97-119 25-47 (62)
72 2v71_A Nuclear distribution pr 74.3 32 0.0011 27.6 11.1 15 131-145 90-104 (189)
73 3m91_A Proteasome-associated A 73.4 16 0.00053 23.5 6.8 14 78-91 14-27 (51)
74 3mq7_A Bone marrow stromal ant 72.8 22 0.00076 26.7 8.2 6 132-137 95-100 (121)
75 2yy0_A C-MYC-binding protein; 72.6 8 0.00027 24.9 5.0 20 81-100 20-39 (53)
76 4etp_A Kinesin-like protein KA 72.2 12 0.0004 32.8 7.6 14 129-142 45-58 (403)
77 1gu4_A CAAT/enhancer binding p 72.0 22 0.00074 24.6 7.8 25 75-99 45-69 (78)
78 1am9_A Srebp-1A, protein (ster 71.6 6.8 0.00023 26.9 4.8 24 97-120 53-76 (82)
79 3cve_A Homer protein homolog 1 71.4 22 0.00075 24.4 10.3 37 105-141 11-47 (72)
80 1zme_C Proline utilization tra 71.4 4.7 0.00016 25.8 3.8 25 72-96 43-67 (70)
81 2yy0_A C-MYC-binding protein; 70.9 9.7 0.00033 24.5 5.1 23 93-115 25-47 (53)
82 2w83_C C-JUN-amino-terminal ki 70.3 25 0.00085 24.6 8.1 17 78-94 7-23 (77)
83 3vmx_A Voltage-gated hydrogen 70.3 19 0.00063 23.1 6.4 31 79-109 3-33 (48)
84 1nkp_B MAX protein, MYC proto- 69.9 7.6 0.00026 26.4 4.8 22 99-120 52-73 (83)
85 3i00_A HIP-I, huntingtin-inter 69.6 32 0.0011 25.6 10.3 46 68-113 35-80 (120)
86 1nlw_A MAD protein, MAX dimeri 69.6 7.8 0.00027 26.7 4.8 34 72-119 46-79 (80)
87 3a2a_A Voltage-gated hydrogen 68.6 15 0.00053 24.3 5.7 34 79-112 10-43 (58)
88 3u06_A Protein claret segregat 68.6 14 0.00047 32.6 7.3 52 84-142 7-58 (412)
89 3vmx_A Voltage-gated hydrogen 68.5 20 0.0007 22.9 6.5 38 103-147 6-43 (48)
90 1i84_S Smooth muscle myosin he 67.2 37 0.0013 33.4 10.6 46 75-120 859-904 (1184)
91 1kd8_B GABH BLL, GCN4 acid bas 67.0 13 0.00044 22.5 4.7 29 111-146 4-32 (36)
92 4ath_A MITF, microphthalmia-as 66.5 17 0.00056 25.7 6.0 43 72-125 38-80 (83)
93 4ati_A MITF, microphthalmia-as 66.5 2.3 7.9E-05 31.4 1.6 23 103-125 93-115 (118)
94 3he5_A Synzip1; heterodimeric 66.0 22 0.00075 22.3 6.2 39 99-144 8-46 (49)
95 1hjb_A Ccaat/enhancer binding 65.6 16 0.00054 25.8 5.8 37 97-147 39-75 (87)
96 2v66_B Nuclear distribution pr 65.2 39 0.0013 24.9 9.4 47 75-121 37-83 (111)
97 2r2v_A GCN4 leucine zipper; co 64.8 15 0.00052 21.9 4.6 26 75-100 3-28 (34)
98 2ocy_A RAB guanine nucleotide 64.3 48 0.0017 25.7 10.7 43 78-120 49-91 (154)
99 2v71_A Nuclear distribution pr 63.9 55 0.0019 26.2 13.1 14 131-144 97-110 (189)
100 2xdj_A Uncharacterized protein 63.9 34 0.0012 23.8 7.6 44 75-118 22-65 (83)
101 1nkp_A C-MYC, MYC proto-oncoge 63.9 17 0.00059 25.3 5.7 17 105-121 70-86 (88)
102 1dip_A Delta-sleep-inducing pe 63.5 6.2 0.00021 27.7 3.2 26 90-115 18-43 (78)
103 2wvr_A Geminin; DNA replicatio 63.5 39 0.0013 27.6 8.4 28 87-114 115-142 (209)
104 1dip_A Delta-sleep-inducing pe 63.2 9 0.00031 26.8 4.0 22 73-94 22-43 (78)
105 1jcd_A Major outer membrane li 63.0 28 0.00094 22.5 7.3 24 75-98 6-29 (52)
106 3u1c_A Tropomyosin alpha-1 cha 62.8 38 0.0013 24.0 11.6 68 74-141 24-91 (101)
107 1uii_A Geminin; human, DNA rep 62.5 23 0.00077 25.1 6.0 27 88-114 47-73 (83)
108 4h22_A Leucine-rich repeat fli 62.0 38 0.0013 24.8 7.4 71 48-118 6-82 (103)
109 3vkg_A Dynein heavy chain, cyt 61.8 81 0.0028 35.0 12.7 70 79-148 2027-2096(3245)
110 3m9b_A Proteasome-associated A 61.6 12 0.0004 31.5 5.2 40 75-114 56-95 (251)
111 2er8_A Regulatory protein Leu3 61.2 4.8 0.00016 26.1 2.2 22 72-93 48-69 (72)
112 1dh3_A Transcription factor CR 61.0 14 0.00048 23.7 4.4 28 96-123 24-51 (55)
113 3jsv_C NF-kappa-B essential mo 60.7 44 0.0015 24.1 8.8 51 59-109 9-62 (94)
114 4emc_A Monopolin complex subun 60.2 51 0.0017 26.6 8.5 41 77-124 17-57 (190)
115 2oa5_A Hypothetical protein BQ 59.7 5.4 0.00019 29.7 2.5 23 75-97 10-32 (110)
116 1gd2_E Transcription factor PA 59.5 38 0.0013 22.9 8.1 42 74-122 23-64 (70)
117 2wt7_A Proto-oncogene protein 58.5 35 0.0012 22.2 6.5 26 95-120 24-49 (63)
118 2xdj_A Uncharacterized protein 58.1 44 0.0015 23.2 7.3 33 89-121 22-54 (83)
119 4b4t_K 26S protease regulatory 58.1 16 0.00055 32.2 5.7 52 84-142 39-90 (428)
120 2j5u_A MREC protein; bacterial 57.8 5.1 0.00018 32.9 2.3 38 106-147 24-61 (255)
121 2wuj_A Septum site-determining 57.0 13 0.00043 24.0 3.7 24 74-97 28-51 (57)
122 3s9g_A Protein hexim1; cyclin 56.6 56 0.0019 23.9 9.4 22 91-112 41-62 (104)
123 1a93_B MAX protein, coiled coi 56.3 23 0.00078 21.2 4.4 14 105-118 18-31 (34)
124 2eqb_B RAB guanine nucleotide 56.2 54 0.0019 23.7 8.4 48 74-121 13-60 (97)
125 1am9_A Srebp-1A, protein (ster 55.8 41 0.0014 22.8 6.4 6 74-79 24-29 (82)
126 2e7s_A RAB guanine nucleotide 55.7 28 0.00097 26.6 6.0 9 111-119 70-78 (135)
127 1nlw_A MAD protein, MAX dimeri 55.4 21 0.00073 24.4 4.9 23 98-120 51-73 (80)
128 1uii_A Geminin; human, DNA rep 54.9 20 0.00068 25.4 4.7 33 108-147 46-78 (83)
129 2dgc_A Protein (GCN4); basic d 54.5 20 0.00067 23.6 4.4 16 102-117 38-53 (63)
130 1nkp_A C-MYC, MYC proto-oncoge 54.4 47 0.0016 23.0 6.6 8 74-81 53-60 (88)
131 3tnu_A Keratin, type I cytoske 54.3 61 0.0021 23.7 9.7 25 76-100 48-72 (131)
132 2zxx_A Geminin; coiled-coil, c 53.3 28 0.00095 24.4 5.2 30 87-116 34-63 (79)
133 3tq2_A KE1; parallel three hel 53.3 33 0.0011 20.3 5.1 31 90-120 4-34 (36)
134 1wlq_A Geminin; coiled-coil; 2 52.8 33 0.0011 24.3 5.5 28 87-114 38-65 (83)
135 3oa7_A Head morphogenesis prot 50.0 60 0.0021 26.4 7.4 43 82-124 32-74 (206)
136 2v66_B Nuclear distribution pr 49.0 77 0.0026 23.3 10.0 29 94-122 35-63 (111)
137 3cl3_D NF-kappa-B essential mo 48.6 41 0.0014 25.6 5.8 42 106-147 53-94 (130)
138 2lw1_A ABC transporter ATP-bin 48.5 57 0.002 22.3 6.3 48 73-120 22-75 (89)
139 3na7_A HP0958; flagellar bioge 48.2 1.1E+02 0.0036 24.6 11.6 71 73-143 32-104 (256)
140 3efg_A Protein SLYX homolog; x 48.0 63 0.0022 22.1 6.9 44 77-120 11-54 (78)
141 1wle_A Seryl-tRNA synthetase; 47.8 1.6E+02 0.0054 26.5 11.6 85 50-134 49-149 (501)
142 3qne_A Seryl-tRNA synthetase, 46.9 87 0.003 28.3 8.7 44 79-122 46-92 (485)
143 2v4h_A NF-kappa-B essential mo 46.3 87 0.003 23.1 10.1 47 59-105 31-80 (110)
144 1p9i_A Cortexillin I/GCN4 hybr 45.8 24 0.00083 20.2 3.2 17 104-120 9-25 (31)
145 1hlo_A Protein (transcription 45.4 20 0.0007 24.1 3.4 18 96-113 59-76 (80)
146 3u1c_A Tropomyosin alpha-1 cha 45.1 79 0.0027 22.3 14.3 80 62-141 19-98 (101)
147 4emc_A Monopolin complex subun 45.0 1.2E+02 0.0041 24.4 9.6 43 75-117 22-64 (190)
148 3e98_A GAF domain of unknown f 44.7 1.1E+02 0.0036 24.9 8.3 25 76-100 68-92 (252)
149 3nmd_A CGMP dependent protein 44.7 54 0.0019 22.5 5.5 28 115-142 40-67 (72)
150 3o0z_A RHO-associated protein 44.0 1.2E+02 0.004 23.9 14.3 56 61-123 78-133 (168)
151 2wuj_A Septum site-determining 44.0 27 0.00092 22.4 3.7 27 96-122 29-55 (57)
152 3m91_A Proteasome-associated A 43.3 62 0.0021 20.6 6.5 21 81-101 10-30 (51)
153 3mq9_A Bone marrow stromal ant 42.7 1.6E+02 0.0054 25.1 10.1 21 124-144 443-465 (471)
154 1deq_A Fibrinogen (alpha chain 42.6 71 0.0024 28.4 7.2 46 72-117 112-157 (390)
155 1wlq_A Geminin; coiled-coil; 2 42.2 48 0.0017 23.4 5.0 33 108-147 38-70 (83)
156 3s4r_A Vimentin; alpha-helix, 42.0 87 0.003 21.9 9.1 33 84-116 13-45 (93)
157 3uux_B Mitochondrial division 41.8 96 0.0033 25.8 7.5 51 73-123 177-227 (242)
158 4gkw_A Spindle assembly abnorm 41.2 1.2E+02 0.0042 23.4 10.6 27 117-143 100-126 (167)
159 3ol1_A Vimentin; structural ge 40.8 1E+02 0.0035 22.3 9.4 9 134-142 67-75 (119)
160 3tnu_B Keratin, type II cytosk 40.5 1E+02 0.0035 22.3 11.1 27 75-101 45-71 (129)
161 3bbp_D GRIP and coiled-coil do 40.0 24 0.00081 24.3 3.0 44 78-121 20-63 (71)
162 3swk_A Vimentin; cytoskeleton, 39.6 91 0.0031 21.5 7.0 54 90-143 3-56 (86)
163 4gkw_A Spindle assembly abnorm 39.1 1.3E+02 0.0045 23.2 8.0 13 105-117 144-156 (167)
164 2oa5_A Hypothetical protein BQ 38.4 18 0.00061 26.9 2.3 23 97-119 11-33 (110)
165 3ra3_B P2F; coiled coil domain 38.3 39 0.0013 19.0 3.2 11 87-97 7-17 (28)
166 4etp_A Kinesin-like protein KA 37.8 1.3E+02 0.0044 26.1 8.2 14 77-90 7-20 (403)
167 2efr_A General control protein 36.2 1.5E+02 0.005 22.9 10.6 33 109-141 78-110 (155)
168 1hwt_C Protein (heme activator 36.1 21 0.00072 23.3 2.3 23 70-92 55-77 (81)
169 2akf_A Coronin-1A; coiled coil 35.8 40 0.0014 19.6 3.1 25 77-101 3-27 (32)
170 1deb_A APC protein, adenomatou 34.8 93 0.0032 20.2 7.2 43 98-147 7-49 (54)
171 2oto_A M protein; helical coil 34.8 1.4E+02 0.0048 22.2 12.0 28 76-103 53-80 (155)
172 1joc_A EEA1, early endosomal a 34.5 1.3E+02 0.0045 21.8 7.9 20 78-97 16-35 (125)
173 2xnx_M M protein, M1-BC1; cell 34.4 24 0.00084 27.3 2.6 49 98-146 84-132 (146)
174 3vkg_A Dynein heavy chain, cyt 33.1 5.6E+02 0.019 28.7 13.8 18 71-88 2033-2050(3245)
175 2dq0_A Seryl-tRNA synthetase; 32.7 1.6E+02 0.0056 25.9 8.1 58 77-134 42-102 (455)
176 2jo8_A Serine/threonine-protei 31.8 1E+02 0.0035 19.8 5.1 22 129-150 21-42 (51)
177 2j5u_A MREC protein; bacterial 31.6 25 0.00085 28.8 2.4 15 104-118 46-60 (255)
178 3htk_A Structural maintenance 31.6 95 0.0033 19.3 8.4 48 71-118 10-57 (60)
179 3q0x_A Centriole protein; cent 31.3 2.1E+02 0.0073 23.3 9.3 55 48-108 159-213 (228)
180 1jcd_A Major outer membrane li 30.7 1.1E+02 0.0036 19.6 6.7 29 80-108 4-32 (52)
181 2wvr_A Geminin; DNA replicatio 30.6 65 0.0022 26.3 4.7 33 108-147 115-147 (209)
182 3lss_A Seryl-tRNA synthetase; 30.1 2.2E+02 0.0077 25.5 8.6 9 53-61 21-29 (484)
183 3he4_A Synzip6; heterodimeric 29.9 1E+02 0.0035 19.7 4.6 33 74-106 18-50 (56)
184 3e98_A GAF domain of unknown f 29.8 1.2E+02 0.004 24.6 6.2 39 95-133 66-104 (252)
185 2xu6_A MDV1 coiled coil; prote 29.7 1.4E+02 0.0047 20.5 5.6 46 74-119 22-67 (72)
186 3q0x_A Centriole protein; cent 29.5 2.3E+02 0.0079 23.1 8.0 42 79-120 170-211 (228)
187 1zxa_A CGMP-dependent protein 28.6 54 0.0019 22.1 3.3 32 115-146 25-56 (67)
188 3a2a_A Voltage-gated hydrogen 28.1 1.1E+02 0.0036 20.2 4.5 36 104-146 14-49 (58)
189 1gmj_A ATPase inhibitor; coile 28.1 1.6E+02 0.0054 20.7 8.8 39 61-99 37-77 (84)
190 3trt_A Vimentin; cytoskeleton, 28.0 1.3E+02 0.0044 19.7 7.8 8 135-142 55-62 (77)
191 2ocy_A RAB guanine nucleotide 27.8 2.1E+02 0.0072 22.1 9.9 66 79-146 78-146 (154)
192 2c9l_Y EB1, zebra, BZLF1 trans 27.5 1.3E+02 0.0046 19.7 6.8 21 59-79 8-28 (63)
193 1m1j_C Fibrinogen gamma chain; 27.5 1.8E+02 0.0061 25.7 7.4 13 133-145 116-128 (409)
194 2nrj_A HBL B protein; enteroto 27.4 2.4E+02 0.0083 23.8 8.0 73 70-145 120-192 (346)
195 4h22_A Leucine-rich repeat fli 26.9 1.8E+02 0.0063 21.1 8.2 13 77-89 6-18 (103)
196 2v4h_A NF-kappa-B essential mo 26.6 1.9E+02 0.0066 21.2 12.3 34 110-143 64-97 (110)
197 3coq_A Regulatory protein GAL4 26.2 71 0.0024 20.9 3.6 23 72-94 44-66 (89)
198 4g1a_A AQ-C16C19 peptide; heli 25.8 25 0.00085 20.3 1.0 26 75-100 2-27 (32)
199 2oto_A M protein; helical coil 24.6 2.2E+02 0.0074 21.1 10.6 57 85-141 48-105 (155)
200 1gk7_A Vimentin; intermediate 24.6 1.2E+02 0.0041 18.1 5.2 13 82-94 22-34 (39)
201 2e7s_A RAB guanine nucleotide 24.3 1.1E+02 0.0036 23.3 4.6 35 111-145 99-133 (135)
202 1gk6_A Vimentin; intermediate 24.1 1.4E+02 0.005 19.0 5.9 31 77-107 4-34 (59)
203 1uix_A RHO-associated kinase; 24.0 1.7E+02 0.006 19.8 7.7 30 78-107 2-31 (71)
204 1hlo_A Protein (transcription 23.7 1.5E+02 0.005 19.7 4.9 17 105-121 61-77 (80)
205 2no2_A HIP-I, huntingtin-inter 23.5 2.1E+02 0.0071 20.5 9.8 17 70-86 26-42 (107)
206 1fxk_C Protein (prefoldin); ar 23.3 2E+02 0.007 20.4 7.0 21 77-97 99-119 (133)
207 2zvf_A Alanyl-tRNA synthetase; 23.0 2.1E+02 0.0072 20.9 6.1 24 77-100 29-52 (171)
208 3m0d_C TNF receptor-associated 22.7 1.6E+02 0.0056 19.0 8.3 27 71-97 4-30 (65)
209 3w03_C DNA repair protein XRCC 22.2 2.1E+02 0.007 22.7 6.1 23 72-94 151-173 (184)
210 1m1j_B Fibrinogen beta chain; 21.9 4.3E+02 0.015 23.7 11.4 19 129-147 175-193 (464)
211 1c94_A Retro-GCN4 leucine zipp 21.6 25 0.00084 21.1 0.4 27 116-142 10-36 (38)
212 4b4t_K 26S protease regulatory 21.4 1.7E+02 0.0057 25.6 6.0 40 78-117 47-86 (428)
213 1ses_A Seryl-tRNA synthetase; 21.4 1.8E+02 0.0062 25.3 6.2 58 77-134 39-97 (421)
214 3qh9_A Liprin-beta-2; coiled-c 21.3 2.2E+02 0.0074 19.9 7.0 19 106-124 24-42 (81)
215 2ve7_A Kinetochore protein HEC 21.1 1.4E+02 0.0046 25.1 5.2 22 81-102 186-207 (315)
216 1m1j_A Fibrinogen alpha subuni 21.1 3.2E+02 0.011 24.9 7.8 17 130-146 140-156 (491)
217 1s1c_X RHO-associated, coiled- 21.1 2E+02 0.0069 19.5 7.9 31 77-107 3-33 (71)
218 2ve7_C Kinetochore protein NUF 20.9 58 0.002 26.7 2.7 18 105-122 159-176 (250)
219 4b4t_M 26S protease regulatory 20.6 77 0.0026 27.9 3.6 69 72-142 1-73 (434)
220 3nmd_A CGMP dependent protein 20.6 2.1E+02 0.0072 19.5 7.5 24 74-97 41-64 (72)
221 2kz5_A Transcription factor NF 20.2 17 0.00058 26.2 -0.6 30 44-73 58-87 (91)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.60 E-value=1.5e-15 Score=101.71 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=48.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999988887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.33 E-value=7.1e-12 Score=85.47 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
+||.+|+..||++|+|||.||+.|+++|+.+|..|+.+|..|..+|..|..+...|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999987776655554
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.27 E-value=2e-11 Score=82.44 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
||.+|+..||++|++||.||+.|+++||.+|..|..+|..|..+|..|..+...|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999998777554444
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.16 E-value=7.6e-11 Score=80.71 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQ 102 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~ 102 (168)
.|+...||. .||+||+|||.||+.|+++||.+|..|..+|..|..+|..|..+
T Consensus 7 ~d~~~~KR~-rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 7 SDPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp ----CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544443 49999999999999999999999999999999988888777654
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.15 E-value=1.1e-10 Score=79.17 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
|+.+|...||++|++||.||+.|+++||.+|..|..+|..|..+|..|..++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777899999999999999999999999999999999999998777654443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.97 E-value=8.2e-10 Score=77.25 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
+...||...||.|++..|.||.+||.+||.+|..|+.++..|..+...|..+...|.+||..|+
T Consensus 7 ~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 7 EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3346788899999999999999999999999999999988877777777777777777766653
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.88 E-value=5.3e-09 Score=71.31 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
|+.++...||.+|+|+|.||+.++++|+.++..|..+|..|..+|+.|+.++..|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999999999999999999999999999999988876655554
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.27 E-value=5.6e-06 Score=58.79 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
|+.-..|-..|.++|+|||.+++.-..+++.+|..|+.||..|..+|..|..+...|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455899999999999999999999999999999999998888776555444
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.23 E-value=8.1e-06 Score=59.07 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
.|++-..|-..|.++|+|||.+++.-..+++.+|..|+.||..|..+|..|..+...|
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556999999999999999999999999999999988888888665544433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.06 E-value=1.8e-07 Score=70.18 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=41.4
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~ 93 (168)
.......-|..||-++||.+|+.+|.||+..+++||.++..|+.+...|.
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678999999999999999999999999999988877776554443
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.95 E-value=1.6e-05 Score=50.43 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
++|+.+||.++..|+..|++|..+|+.|++++.+|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 579999999999999999999999999998777765
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.87 E-value=0.00015 Score=52.77 Aligned_cols=70 Identities=29% Similarity=0.383 Sum_probs=55.3
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
+....++-|-.||-+.||.+|+-.|-||...+.+||..+..|+.+...|..++. .+..|-..+|+++.+|
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~-------~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS-------RLARERDAYKVKSEKL 88 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 344567889999999999999999999999999999998888877666655544 4445667777777665
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.89 E-value=0.14 Score=36.41 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
-++.||.+|+.+-..++-|.-+|..|..++..|..++.+++..-..|.. .++.|+.|.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~-------en~qLk~E~ 64 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHH
Confidence 4678888888777777666666666666666666666665555444443 555555553
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=95.19 E-value=0.24 Score=35.50 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQ-----NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~-----~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
.+|..|+.+|..|..+|..+... ......+-..|+.+|..+..+..--++....|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888888777643 23456677788888888888777667777777777777764
No 15
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=94.94 E-value=0.34 Score=36.46 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcC
Q 035677 157 LVNNLNQRFNKM 168 (168)
Q Consensus 157 ~~~~~~~~~~~~ 168 (168)
..++.-.|||||
T Consensus 100 kAqa~Eerf~KL 111 (120)
T 3i00_A 100 KAQANEQRYSKL 111 (120)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334556677765
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.22 E-value=0.24 Score=33.51 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
+..-|.+|++|..-|..|+.++..++.....|.+||..|+.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45568999999999999999999999999999999999873
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.84 E-value=1.4 Score=32.63 Aligned_cols=75 Identities=19% Similarity=0.075 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQN--------------SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~--------------~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
.||.+|..+|..+..+++.|..++.-++... ..+..+-..||.-+....=...=-+...+.|+.||
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888877776554322 23333444555555443322222345678899999
Q ss_pred HHHHHHHHH
Q 035677 139 QILKQLCIM 147 (168)
Q Consensus 139 ~rLk~~~~~ 147 (168)
.-||..+..
T Consensus 100 ~FLKk~hee 108 (119)
T 3ol1_A 100 AFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.79 E-value=1.6 Score=33.32 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+...+.|+..+..+..|+..|..++..++..+..+..++..|+.++.+|..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666666666666555554
No 19
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=91.52 E-value=0.13 Score=37.38 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.6
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 035677 44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETE 81 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~k 81 (168)
.+.....-|.+||-..||..|++.|-||..-++.|+..
T Consensus 54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 44455678999999999999999999999999888753
No 20
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.13 E-value=0.4 Score=33.86 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 108 AENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 108 ~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
.+|..|..++..+++...=.....+.++.|+.++
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333444444444443
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.71 E-value=3.3 Score=29.30 Aligned_cols=14 Identities=57% Similarity=0.698 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 035677 130 QYEELKRERQILKQ 143 (168)
Q Consensus 130 ~~e~L~~Ev~rLk~ 143 (168)
..+.|..|+++|+.
T Consensus 49 ~~~~L~~en~qLk~ 62 (81)
T 2jee_A 49 QREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34445555555543
No 22
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=90.43 E-value=1.8 Score=28.36 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
-++|-++|..|..||+.|..++..-..+...|..|-..+|.-+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 36788999999999999988888777777777777766665443
No 23
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.36 E-value=0.84 Score=31.79 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..|.+||.++..++.-+..|+..|..-+.+...|..+...|..|+.++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35889999999999999999999999999999999999999999888764
No 24
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=90.06 E-value=1.6 Score=27.85 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
++|.+|..|+.-...|..+++-|..++..- ...||+||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 688888888888888888888777666543 46899999888753
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.74 E-value=1.6 Score=27.40 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
.|..|+.....|..+.+.|++....|..||..|++-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4667777777777777777777777777777777655
No 26
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.84 E-value=0.7 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.+|+.|..++..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56899999999999999988887665
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=87.41 E-value=5.3 Score=29.19 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQLCI 146 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~~ 146 (168)
-..+.|.+||++||....
T Consensus 75 ~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457889999999998764
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.97 E-value=2.5 Score=29.70 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQ--------------NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQI 140 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~--------------~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~r 140 (168)
|.+|..++..+..+++.|..++.-+... ...+.++-..||.-+..+.-...=-++..+.|+.||.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888777766654322 23333344455555554443333344667888888887
Q ss_pred HHHH
Q 035677 141 LKQL 144 (168)
Q Consensus 141 Lk~~ 144 (168)
||..
T Consensus 82 Lkk~ 85 (86)
T 3swk_A 82 LKKL 85 (86)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 7753
No 29
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.75 E-value=4.3 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~ 93 (168)
+.+||.+|..|+.||.+|.
T Consensus 5 vaqlenevaslenenetlk 23 (49)
T 3he5_A 5 VAQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHH
Confidence 4556666666665555543
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.41 E-value=11 Score=29.91 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-----hhhhHHH--HHHHHHH
Q 035677 63 YSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS-----GELTFKE--AQYEELK 135 (168)
Q Consensus 63 SA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~-----q~~~lkd--a~~e~L~ 135 (168)
+=.-.|+||.+ .|+-..++.++..+.+|...+..|+.....|.-+...|...|..=. ....+.| +-...|.
T Consensus 26 sE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~ 103 (168)
T 3o0z_A 26 SDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQ 103 (168)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455553 4555566666666666666666666666666655555555543211 1112222 2345666
Q ss_pred HHHHHHHHHH
Q 035677 136 RERQILKQLC 145 (168)
Q Consensus 136 ~Ev~rLk~~~ 145 (168)
.|+.|+|...
T Consensus 104 ~El~~~k~~~ 113 (168)
T 3o0z_A 104 EEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 31
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.39 E-value=2.4 Score=31.22 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIM 92 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L 92 (168)
+||.++..|+.|+..|
T Consensus 41 ~LE~~~s~le~e~~rl 56 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRL 56 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666666555443
No 32
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.88 E-value=1.7 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.+|..|..++..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 67899999999998888887776654
No 33
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=85.76 E-value=2 Score=25.13 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
+..||.+|.+-+.||..|..++..|+++|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 46789999999999999988888888765
No 34
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.68 E-value=2.5 Score=29.52 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
.+||.+|..|+.-...|..+++.|..++..- ...||+||..|+...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~ 48 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFL 48 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 4688888888888888888888777766554 468999999988753
No 35
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.17 E-value=5.6 Score=31.16 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 104 SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 104 ~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
..|..|...|+.++..+.....-|...++.|..|+.-|+.-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq 111 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.97 E-value=12 Score=32.82 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=13.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 115 QKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.++..++....-.....++++.|.+.++.-.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333334455555555554433
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.81 E-value=2.8 Score=27.73 Aligned_cols=27 Identities=11% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.+..+..+...|..+|.+|+.++..|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777777775554
No 38
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.10 E-value=6.2 Score=27.43 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+..-|.++..|+....-=+.-...|..+...|.-||+.|.++|..|.+
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 334445555555444444444566777888899999999999988765
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.76 E-value=11 Score=28.58 Aligned_cols=6 Identities=0% Similarity=0.218 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035677 133 ELKRER 138 (168)
Q Consensus 133 ~L~~Ev 138 (168)
.|..++
T Consensus 121 ~l~~~~ 126 (138)
T 3hnw_A 121 KYQKNI 126 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.32 E-value=2.6 Score=25.14 Aligned_cols=26 Identities=4% Similarity=0.055 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.++..|..++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57899999999999998888877665
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.68 E-value=11 Score=29.46 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
.|+.|...|..++..++.....|..||..|=.|+
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=82.44 E-value=2.8 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
+.+||.+|..|-.+++.|..++..|..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678999999999999998888877654
No 43
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.35 E-value=3 Score=25.03 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.++..|..++..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 67899999999999998888877665
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.34 E-value=4.8 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHh
Q 035677 97 KYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
..|+.....|..+|..|+..+.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.17 E-value=5.4 Score=29.17 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHHHHhhhhh
Q 035677 101 CQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 101 ~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
.....|..|+..|+.++..|+.
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677777777666654
No 46
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.09 E-value=4.7 Score=28.93 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 102 QNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 102 ~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
+...|..++..|..++..|.. ++..+..|+..+|..+.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345677777777777777765 66777788888877764
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.77 E-value=11 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
+++..+++.++.+|..|..+|..++.+...-..+-..++..|..+.+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777666666666666665555443
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.53 E-value=14 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=15.5
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 115 QKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.++.+++.+.--.+...+.+.+||.|||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555544444455556666666665
No 49
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.00 E-value=3 Score=25.02 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+.|-.++..|-. .++.|+.||.|||.+.
T Consensus 4 nQLE~kVEeLl~-------~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLX-------KNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hhhhHHHHHHHHHHHH
Confidence 345555555554 6778888888888775
No 50
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.98 E-value=2.3 Score=25.82 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
+.+||.+|..|-.+++.|..++..|..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999998888877664
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=80.80 E-value=1.6 Score=36.68 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 035677 133 ELKRERQIL 141 (168)
Q Consensus 133 ~L~~Ev~rL 141 (168)
.|++|+++|
T Consensus 86 ~LkeElerL 94 (251)
T 3m9b_A 86 ALREEVDRL 94 (251)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333444433
No 52
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.78 E-value=3.7 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.++..|..++..+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56899999999999988888877665
No 53
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.26 E-value=6.9 Score=27.00 Aligned_cols=45 Identities=4% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
++..+++.++.+|..|..+|..++.....-..+-..++..|..+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777766665555555555555554443
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.99 E-value=22 Score=31.27 Aligned_cols=11 Identities=36% Similarity=0.589 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 035677 132 EELKRERQILK 142 (168)
Q Consensus 132 e~L~~Ev~rLk 142 (168)
+.+++|+.+|+
T Consensus 540 ~~~~~~~~~le 550 (597)
T 3oja_B 540 EDLEQENIALE 550 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHhhhHHHH
Confidence 33333333333
No 55
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=79.45 E-value=2.8 Score=25.15 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.+|..|..++..|.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56899999999999999888887665
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=79.36 E-value=2.7 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
.||..|..++..|+.+ ...|..+|..|+.+|.+|.
T Consensus 47 ~YI~~L~~~~~~l~~e--------------~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQD--------------IDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhc
Confidence 4555555555555443 3445567777777777664
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.16 E-value=43 Score=33.00 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 035677 83 KALQAEVAIM 92 (168)
Q Consensus 83 ~~Lq~En~~L 92 (168)
..|+.++..+
T Consensus 987 ~~L~~e~~~l 996 (1080)
T 2dfs_A 987 LSLQEEIAKL 996 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.11 E-value=30 Score=34.05 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 89 VAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
...|..++..++.++..+..|...|..+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333
No 59
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=76.99 E-value=17 Score=25.67 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER 138 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev 138 (168)
.|...|.-+|+.++.+...-.-.-..=|..|.+|.++...+|+..+.|..|+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333344444444333333333333344677778887888888777776665
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=76.44 E-value=3.9 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
.+.+||.+|..|-.++..|..++..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 357899999999999999888877665
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.27 E-value=29 Score=28.03 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
|+.+..+-.-.......-.....-+.+++..+..++.+...+..++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433444444444455555666666666666555555554443
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=76.01 E-value=4.1 Score=24.44 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
.+.+||.+|..|-.++..|..++..|..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3578999999999999998888876653
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.82 E-value=21 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.178 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 035677 132 EELKRERQILKQLC 145 (168)
Q Consensus 132 e~L~~Ev~rLk~~~ 145 (168)
..|+.|+..+|.-.
T Consensus 85 ~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 85 AELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 34555555555543
No 64
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=75.57 E-value=3.4 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 112 SMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 112 ~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.|-.++..|-. .+..|..||.|||.+..
T Consensus 4 QLE~kVEeLl~-------~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLS-------KNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------HhHHHHHHHHHHHHHhh
Confidence 34455555544 67788888999888753
No 65
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.49 E-value=26 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 035677 128 EAQYEELKRERQILKQ 143 (168)
Q Consensus 128 da~~e~L~~Ev~rLk~ 143 (168)
.+-+-.|..||.||+.
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 139 LSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhhc
Confidence 3456677888888874
No 66
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=75.21 E-value=6.4 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
.||..|...|..-+.+...|..||.+|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4788888888888888889999998875
No 67
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=75.17 E-value=2.1 Score=35.50 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 035677 48 ELEAKKLRRVLASRQYSQKYRLKQLHYIMQL 78 (168)
Q Consensus 48 ~~D~Kr~KRilaNReSA~RSR~RK~~yi~eL 78 (168)
..+++|.+|+|+-=.-=.|-|+-+..-++++
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~ 146 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEF 146 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999885444444444444444433
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=74.75 E-value=6 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+.|-.++..|-+ .+..|..||.|||.+.
T Consensus 3 nQLEdKvEeLl~-------~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXS-------KXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-------HhhHHHHHHHHHHHHH
Confidence 345556665554 5778888888888875
No 69
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.45 E-value=23 Score=26.13 Aligned_cols=15 Identities=7% Similarity=-0.040 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 132 EELKRERQILKQLCI 146 (168)
Q Consensus 132 e~L~~Ev~rLk~~~~ 146 (168)
..|+.|+..+|.-..
T Consensus 87 ~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 87 GSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555433
No 70
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.38 E-value=6.1 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
+.|-.++..|-+ .+..|..||.|||.+.
T Consensus 4 nQLEdKVEeLl~-------~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILS-------XLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------hhhHHHHHHHHHHHHH
Confidence 345555555554 5778888899988875
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.33 E-value=4.1 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
..|+.....|..+|..|+..+..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=74.26 E-value=32 Score=27.56 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 035677 131 YEELKRERQILKQLC 145 (168)
Q Consensus 131 ~e~L~~Ev~rLk~~~ 145 (168)
...|.+||..|+...
T Consensus 90 ~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 90 VSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=73.36 E-value=16 Score=23.54 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAI 91 (168)
Q Consensus 78 LE~kV~~Lq~En~~ 91 (168)
|..++..|...|..
T Consensus 14 l~~~l~~L~~rN~r 27 (51)
T 3m91_A 14 LEARIDSLAARNSK 27 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.76 E-value=22 Score=26.74 Aligned_cols=6 Identities=67% Similarity=1.055 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035677 132 EELKRE 137 (168)
Q Consensus 132 e~L~~E 137 (168)
|.|.++
T Consensus 95 erlr~~ 100 (121)
T 3mq7_A 95 ERLRRE 100 (121)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.57 E-value=8 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~ 100 (168)
.|..|+.||..|..++..|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554443
No 76
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.23 E-value=12 Score=32.79 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILK 142 (168)
Q Consensus 129 a~~e~L~~Ev~rLk 142 (168)
.+-..|..+++.||
T Consensus 45 ~~rr~l~n~~~elk 58 (403)
T 4etp_A 45 TVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 34444555555554
No 77
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=72.05 E-value=22 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
+.+|+.+=..|..++..|..++..|
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 78
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=71.60 E-value=6.8 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
..|+.+...|..++..|+..++..
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666777777777666543
No 79
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.39 E-value=22 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 105 LLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
.+..+|..|..++..+++...=.....+.++.|+.++
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444455555555444
No 80
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=71.38 E-value=4.7 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l 96 (168)
..|+++|+.+|..|+..+..|...|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999998888776654
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.91 E-value=9.7 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 035677 93 SPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 93 ~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
..++..|+..+..|..++.+|+.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.31 E-value=25 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSP 94 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~ 94 (168)
.-++|..|-.||.+|..
T Consensus 7 mgkevEnLi~EN~eLl~ 23 (77)
T 2w83_C 7 MGREVENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34566777777776654
No 83
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=70.26 E-value=19 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAE 109 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~E 109 (168)
|.++..|..-|..|..+|..|+..|..+.-|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQE 33 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQE 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3445555555555555555555544444433
No 84
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.92 E-value=7.6 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhhh
Q 035677 99 ADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 99 l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
|+.+...|..+...|+.+...|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.64 E-value=32 Score=25.56 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035677 68 RLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSM 113 (168)
Q Consensus 68 R~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~L 113 (168)
+..-+.||.+|+.+|..|+.+...-.........++..|+++...|
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888777665554444444444444444443
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.61 E-value=7.8 Score=26.71 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
..||..|+.+...|..+... |..++..|+.+|..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~--------------L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQ--------------LQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhh
Confidence 46777777777666655543 45566666666653
No 87
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=68.63 E-value=15 Score=24.25 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGS 112 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~ 112 (168)
|.+|..|..-|-.|..+|..|+.+|....-|+.-
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieR 43 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIER 43 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444433
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.59 E-value=14 Score=32.57 Aligned_cols=52 Identities=25% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.|+.|..++..++..+++....+..++..++++| .-.+.+-..|..+++.||
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444445555554443 223334444445554443
No 89
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=68.51 E-value=20 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 103 NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 103 ~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
...|..-|..|-.++..|+. ....++-||+||+.+..+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~-------~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEF-------SCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHH
Confidence 34455556666666666655 344555788888887653
No 90
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.19 E-value=37 Score=33.37 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
+.+|+.++..|+.....+...+..++.+...|..+...++..+...
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e 904 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE 904 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 91
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=66.98 E-value=13 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=17.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
+.|..++..|-. .+..|+.||.|||.+..
T Consensus 4 nQLE~KVEeLl~-------~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKS-------KLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-------HhHHHHHHHHHHHHHhc
Confidence 345555555444 45667777888877653
No 92
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=66.50 E-value=17 Score=25.73 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELT 125 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~ 125 (168)
-.||..|...++.+..+. .....|...|..|..|+++|+-++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 457766665555444333 3344577888888888888876654
No 93
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=66.45 E-value=2.3 Score=31.44 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhh
Q 035677 103 NSLLRAENGSMKQKLSAFSGELT 125 (168)
Q Consensus 103 ~~~L~~EN~~Lk~rL~~l~q~~~ 125 (168)
...|..+|..|..+|+.|+-++.
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888876554
No 94
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.99 E-value=22 Score=22.33 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677 99 ADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144 (168)
Q Consensus 99 l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~ 144 (168)
|+.+-..|..||..||.+- .+-+ -+...|++||-.||..
T Consensus 8 lenevaslenenetlkkkn------lhkk-dliaylekeianlrkk 46 (49)
T 3he5_A 8 LENEVASLENENETLKKKN------LHKK-DLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhc------ccHH-HHHHHHHHHHHHHHHH
Confidence 3344445556666665431 2222 3566788999888864
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.56 E-value=16 Score=25.84 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 97 KYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
..+......|..||..|+.+|. .|+.|+..||.+..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 3445555666677777777665 467788888888753
No 96
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.22 E-value=39 Score=24.93 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
+..|+..+..|...+..|...|..|++.|+.|.-.....-.-|..++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 55566666666666666666666666666666655555444444433
No 97
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.78 E-value=15 Score=21.92 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+.+||.+|..|-.++..|..++..+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56889999988888888887776654
No 98
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.27 E-value=48 Score=25.72 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
|+........+...|...+..-.........+...+...|..|
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333444444333
No 99
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.93 E-value=55 Score=26.19 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 035677 131 YEELKRERQILKQL 144 (168)
Q Consensus 131 ~e~L~~Ev~rLk~~ 144 (168)
...|..+++.|+.-
T Consensus 97 l~~l~~~~~~l~~~ 110 (189)
T 2v71_A 97 LSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555444443
No 100
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.92 E-value=34 Score=23.82 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
+.+|-.++..|+.|+..|..+|..+..+...|......+=..|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666555555554444
No 101
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.88 E-value=17 Score=25.26 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 035677 105 LLRAENGSMKQKLSAFS 121 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~ 121 (168)
.|..+|..|+.+|..|.
T Consensus 70 ~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 70 LLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35567777777776654
No 102
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.53 E-value=6.2 Score=27.65 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQ 115 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~ 115 (168)
..|..+|..|...+..|..||.-||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666664
No 103
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.47 E-value=39 Score=27.64 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
.||..|...|..++.+...|..||.+|+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555554
No 104
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.17 E-value=9 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSP 94 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~ 94 (168)
..|.||+.++..|+.||..|..
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777776654
No 105
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=62.99 E-value=28 Score=22.45 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
|++|..+|+.|-.++..|+..+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444433
No 106
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.79 E-value=38 Score=24.01 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
-.+.++.++..+...+..+...|..|++.+..|..+-..+..+|......+.-.+-.-.....||..|
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444333333333333333444444
No 107
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=62.52 E-value=23 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 88 EVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 88 En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
||..|...|..++.+...|..+|.+|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444444444444443
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.02 E-value=38 Score=24.79 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHh-----hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 48 ELEAKKLRRVLAS-----RQYSQKYRLKQL-HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 48 ~~D~Kr~KRilaN-----ReSA~RSR~RK~-~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
.+++|=.|=|++| -.||.-.-.--+ --++|+|..+..++.++.+....+..+...+..|..+...|+..|.
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 222222221111 1244455555555555555555555555555555555555554443
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.77 E-value=81 Score=34.98 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMY 148 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~ 148 (168)
+.++...+.+...+..+|..|+.++..+..|...|+..+..........+.+...|..|-.|-.......
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 3444555566667777778888888888888888888888888888888889999999988876665543
No 110
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=61.61 E-value=12 Score=31.47 Aligned_cols=40 Identities=30% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
+.+|+.++..|...|..|...+..+..+...|..|+..|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666666666655555555555554443
No 111
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=61.25 E-value=4.8 Score=26.09 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMS 93 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~ 93 (168)
..|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999987665543
No 112
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.00 E-value=14 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 96 IKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
+..|+.....|..||..|+.++..|.+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666777777766666543
No 113
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.65 E-value=44 Score=24.07 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHH
Q 035677 59 ASRQYSQKYRLKQLHYIMQLETEVKALQ---AEVAIMSPRIKYADCQNSLLRAE 109 (168)
Q Consensus 59 aNReSA~RSR~RK~~yi~eLE~kV~~Lq---~En~~L~~~l~~l~~~~~~L~~E 109 (168)
.+-.+|-.+=..|+..|++|-..+..+. ..+.-|..++..+..++..=++.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666678888888888777766 34445566666666555444433
No 114
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.19 E-value=51 Score=26.57 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
.-..-|+.|+.||..|+.++.... .|...|+.+|+++..+.
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~-------~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKA-------TEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 334456777777777777776555 45555555555555443
No 115
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.72 E-value=5.4 Score=29.71 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
++||..++..|+.||..|..+|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888877765
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.47 E-value=38 Score=22.90 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|=+--+..+..|+.++ ..|+..+..|..||..|+..+..|..
T Consensus 23 fReRK~~~i~~LE~~v-------~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 23 FRKRKEDHLKALETQV-------VTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444 44444444556666666666655543
No 117
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.55 E-value=35 Score=22.16 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
.+..|+.+...|..+|..|+..+..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777787777776443
No 118
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.13 E-value=44 Score=23.23 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 89 VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
...|..+|..++.+...|+..+.++...|..+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555666666666666666666555555543
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.09 E-value=16 Score=32.24 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.|...+..|..++..++++...|..|+..|+.++..+.. ....+++|+.+|+
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~-------e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKR-------ELKRAQEEVKRIQ 90 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 444455566666666677777777777776665544432 2344555555443
No 120
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.81 E-value=5.1 Score=32.95 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 106 LRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
|..||.+|+.++..|.... ...+.|+.|-.|||.+...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 4456666666655554322 3456788899999998765
No 121
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.01 E-value=13 Score=24.02 Aligned_cols=24 Identities=4% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
|++++...+..|..||..|..++.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.58 E-value=56 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 035677 91 IMSPRIKYADCQNSLLRAENGS 112 (168)
Q Consensus 91 ~L~~~l~~l~~~~~~L~~EN~~ 112 (168)
.|...++.++.++..|+.....
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~ 62 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKR 62 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444443333
No 123
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=56.33 E-value=23 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 035677 105 LLRAENGSMKQKLS 118 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~ 118 (168)
.|..+|..|..++.
T Consensus 18 dlkrQN~~Le~Qir 31 (34)
T 1a93_B 18 DLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 124
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.16 E-value=54 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
-|..|+.++.....+...|...+..-.........+...+...|..|+
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776666666666666667777777776666
No 125
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.83 E-value=41 Score=22.84 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.3
Q ss_pred HHHHHH
Q 035677 74 YIMQLE 79 (168)
Q Consensus 74 yi~eLE 79 (168)
++.+|.
T Consensus 24 ~f~~L~ 29 (82)
T 1am9_A 24 KIIELK 29 (82)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 126
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.72 E-value=28 Score=26.57 Aligned_cols=9 Identities=0% Similarity=0.305 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 035677 111 GSMKQKLSA 119 (168)
Q Consensus 111 ~~Lk~rL~~ 119 (168)
..+...|..
T Consensus 70 ~~ie~ElE~ 78 (135)
T 2e7s_A 70 DKLNKEVED 78 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 127
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.37 E-value=21 Score=24.42 Aligned_cols=23 Identities=0% Similarity=-0.028 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhh
Q 035677 98 YADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
.|+.....|..|...|+.+...|
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444544444444433
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.87 E-value=20 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 108 AENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 108 ~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.||..|..+|..+.. ++..|+.|.+.||.++..
T Consensus 46 ~EN~~Lh~~ie~l~e-------Ei~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDN-------EIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 589999999888766 678888888999888754
No 129
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.51 E-value=20 Score=23.63 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHHHHHH
Q 035677 102 QNSLLRAENGSMKQKL 117 (168)
Q Consensus 102 ~~~~L~~EN~~Lk~rL 117 (168)
+...|..+|..|+..+
T Consensus 38 ~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 38 KVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 130
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.39 E-value=47 Score=22.98 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 035677 74 YIMQLETE 81 (168)
Q Consensus 74 yi~eLE~k 81 (168)
||..|+.+
T Consensus 53 YI~~L~~~ 60 (88)
T 1nkp_A 53 YILSVQAE 60 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 131
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.28 E-value=61 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
..|+.++..|...+..|...|..++
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 132
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=53.34 E-value=28 Score=24.38 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
.||..|..+|..++.+...|..||..|+.=
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888777543
No 133
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=53.29 E-value=33 Score=20.28 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
+.|.++++.+.+++.+|.-.-..|+.++.+|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777788888888888888887765
No 134
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.79 E-value=33 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677 87 AEVAIMSPRIKYADCQNSLLRAENGSMK 114 (168)
Q Consensus 87 ~En~~L~~~l~~l~~~~~~L~~EN~~Lk 114 (168)
.||..|...|..++.+...|..+|..|+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666665555666655554
No 135
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=50.00 E-value=60 Score=26.45 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677 82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~ 124 (168)
+++|+++-.+.-.+...|+.....|.+|++.|+.+|..|.+..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4566666667777777788888889999999999998887653
No 136
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.99 E-value=77 Score=23.30 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 94 PRIKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 94 ~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..++.|+.+...|+..+..|+.+|..|++
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888899999999999988887
No 137
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=48.57 E-value=41 Score=25.59 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 106 LRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
+...|..|+-++.+|+....+-..-...=+.=.-.|+.+|+.
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~ 94 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQ 94 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666776666655555444444445556666554
No 138
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.46 E-value=57 Score=22.30 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HhHHHHHHHHHHHHHHhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKY---ADC---QNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~---l~~---~~~~L~~EN~~Lk~rL~~l 120 (168)
.-++.|+.++..|+.+...|..++.. +.. ....|..+-..+...|..+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999888863 222 2334444445555555443
No 139
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.21 E-value=1.1e+02 Score=24.64 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF--KEAQYEELKRERQILKQ 143 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l--kda~~e~L~~Ev~rLk~ 143 (168)
..+.+|+..+..|......+...+..+..+...+..+-..++.++........- ..-.+.+|..||+-++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777766666666554432210 11345566666665543
No 140
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.05 E-value=63 Score=22.05 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
+||.++..|+...+-...-|..|...-.....+-..|..+|..|
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555544444444443333333334444444433
No 141
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.79 E-value=1.6e+02 Score=26.54 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHH
Q 035677 50 EAKKLRRVLASRQYS-----QKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYAD-----------CQNSLLRAENGSM 113 (168)
Q Consensus 50 D~Kr~KRilaNReSA-----~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~-----------~~~~~L~~EN~~L 113 (168)
+|-.+++-+++|-.. --.=..--.-.-+|..++..|+.+...++.+|..+. .+...|..+-.+|
T Consensus 49 n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 49 YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhHHHHHHHHH
Q 035677 114 KQKLSAFSGELTFKEAQYEEL 134 (168)
Q Consensus 114 k~rL~~l~q~~~lkda~~e~L 134 (168)
+.+|..++....-.+.....+
T Consensus 129 ~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 129 RKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 142
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.92 E-value=87 Score=28.29 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhhh
Q 035677 79 ETEVKALQAEVAIMSPRIKYADC---QNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~---~~~~L~~EN~~Lk~rL~~l~q 122 (168)
..++..|+.+...++.+|..+.. +...|..+-.+|+.+|..++.
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554432 234555666666666666554
No 143
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.28 E-value=87 Score=23.14 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHH
Q 035677 59 ASRQYSQKYRLKQLHYIMQLETEVKALQA---EVAIMSPRIKYADCQNSL 105 (168)
Q Consensus 59 aNReSA~RSR~RK~~yi~eLE~kV~~Lq~---En~~L~~~l~~l~~~~~~ 105 (168)
.|=.+|...=..|+.-|++|..++..+.. .+.-|.+++..+..++.+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35556777777788888888888887776 444555566555554433
No 144
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.80 E-value=24 Score=20.24 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 035677 104 SLLRAENGSMKQKLSAF 120 (168)
Q Consensus 104 ~~L~~EN~~Lk~rL~~l 120 (168)
..|.+||+.||.++.+|
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777666554
No 145
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.40 E-value=20 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=7.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 035677 96 IKYADCQNSLLRAENGSM 113 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~L 113 (168)
|..|+.....|..++..|
T Consensus 59 I~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 146
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.05 E-value=79 Score=22.30 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 62 QYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 62 eSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
+.|.---.....-+.+++.....++.++..|..++..++.+...+...-...+..|..-.....-.++...+|.+=|+-|
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444556666777777777777777777777777777766666677777777666666677777777766543
No 147
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.04 E-value=1.2e+02 Score=24.38 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
|..|..++..|..++.....+|..|+.+...|...-.....++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4445555555555555555555555555444444444344333
No 148
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=44.75 E-value=1.1e+02 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+=.|+++..|+.+|..|..++..|.
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li 92 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLM 92 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665543
No 149
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.67 E-value=54 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 115 QKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
.+|..++....-+|.+...|..|+..+|
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444555555555554444
No 150
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.00 E-value=1.2e+02 Score=23.93 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 61 RQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 61 ReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
=+.=+++|-+--.-+.||+.+|..|+.|...+...+..+ ..+|..|..+|..|+.+
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666665555555544433 35666666666666543
No 151
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.96 E-value=27 Score=22.41 Aligned_cols=27 Identities=4% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677 96 IKYADCQNSLLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 96 l~~l~~~~~~L~~EN~~Lk~rL~~l~q 122 (168)
|..+..++..|..||.+|+.++..+..
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556777788888888888877764
No 152
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.30 E-value=62 Score=20.63 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~ 101 (168)
++..|+.++..|..+...|..
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~ 30 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLME 30 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 153
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.73 E-value=1.6e+02 Score=25.08 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=10.0
Q ss_pred hhHHHHHH--HHHHHHHHHHHHH
Q 035677 124 LTFKEAQY--EELKRERQILKQL 144 (168)
Q Consensus 124 ~~lkda~~--e~L~~Ev~rLk~~ 144 (168)
+.+++.+. -.|..+++.++.-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 3455555555543
No 154
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.59 E-value=71 Score=28.37 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
-+|.++||.++..|+..+..--..|..|+.....+..+...|-..|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888876655555577777766666666555555554
No 155
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.20 E-value=48 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 108 AENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 108 ~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.||..|...+..+.. ....|+.|..+|+.++..
T Consensus 38 ~EN~~Lh~~ie~~~e-------Ei~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDS-------EIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 478888887776654 677888888888888754
No 156
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.98 E-value=87 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677 84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK 116 (168)
Q Consensus 84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r 116 (168)
.|..--+..-.+|.+|+++|..|.++-..++.+
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444556667777776666666555543
No 157
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.81 E-value=96 Score=25.84 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE 123 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~ 123 (168)
.-|.|+..++..|..--..+..+|..++++=..|..+...++.||..++..
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888888888888888888888888888766553
No 158
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.23 E-value=1.2e+02 Score=23.41 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=15.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 117 LSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 117 L~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
|..|+-...-+|..-+.|..=|..||.
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrK 126 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRK 126 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHH
Confidence 445555555566666666555555554
No 159
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.81 E-value=1e+02 Score=22.33 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 035677 134 LKRERQILK 142 (168)
Q Consensus 134 L~~Ev~rLk 142 (168)
++.++..||
T Consensus 67 ~E~di~~lr 75 (119)
T 3ol1_A 67 AENTLQSFR 75 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 344444444
No 160
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.54 E-value=1e+02 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
|..|+.++..|...+..|...|..++.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444555445555544444433
No 161
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=39.98 E-value=24 Score=24.32 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~ 121 (168)
|..+...+...+..+..=+...+..+..|..+|..||..|.-++
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444445555555555555555554443
No 162
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=39.59 E-value=91 Score=21.47 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 90 AIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 90 ~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
..|..+|..+..++..|..|-..++.-+..+.....---..-..++.|+..||.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrk 56 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 56 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555444444333322221112233444455555553
No 163
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.13 E-value=1.3e+02 Score=23.21 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 035677 105 LLRAENGSMKQKL 117 (168)
Q Consensus 105 ~L~~EN~~Lk~rL 117 (168)
.|..||..++.+|
T Consensus 144 ~LkvENE~vkerl 156 (167)
T 4gkw_A 144 KLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhhHhHHHHH
Confidence 3344444444433
No 164
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.37 E-value=18 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Q 035677 97 KYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 97 ~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
..|..+...|.+||+.||.+|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666788999999999974
No 165
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.26 E-value=39 Score=18.95 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 035677 87 AEVAIMSPRIK 97 (168)
Q Consensus 87 ~En~~L~~~l~ 97 (168)
..|+.|..+|.
T Consensus 7 qknarlkqeia 17 (28)
T 3ra3_B 7 QKNARLKQEIA 17 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhhHHHHHHH
Confidence 33333333333
No 166
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.79 E-value=1.3e+02 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVA 90 (168)
Q Consensus 77 eLE~kV~~Lq~En~ 90 (168)
+|+.++..|+.+..
T Consensus 7 ~~~~~~~~l~~~~~ 20 (403)
T 4etp_A 7 ALKEKIAALKEKIA 20 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443333333
No 167
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.25 E-value=1.5e+02 Score=22.87 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677 109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 109 EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL 141 (168)
+-..|..+|.....-+-+.+---..|.++|.+|
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333444444444
No 168
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=36.15 E-value=21 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIM 92 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L 92 (168)
.+..|++.|+.+|..|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999998765544
No 169
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.82 E-value=40 Score=19.58 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADC 101 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~ 101 (168)
-||..+..|++-..+|..+++.|+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666666553
No 170
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.76 E-value=93 Score=20.15 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 98 YADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.|-++-..|+.||..|+..|..=.. ..-.|+.|.-.||.+..+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~-------~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSN-------HLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHH-------HHHHHHhhhhhHHHHHHH
Confidence 3445666788888888888876554 223445555556655543
No 171
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=34.75 E-value=1.4e+02 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 76 MQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
.+|+.++..|...|..|..++..+..++
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444444
No 172
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.53 E-value=1.3e+02 Score=21.81 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~ 97 (168)
.|.+|..|+.++.+|...+.
T Consensus 16 ~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 173
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.39 E-value=24 Score=27.35 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 98 YADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.+..+...|.++...|...+..|..+.+|.++.-..|.+++.-.|.+..
T Consensus 84 ~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 84 NAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777788888888889999999988888888877776653
No 174
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.07 E-value=5.6e+02 Score=28.67 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAE 88 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~E 88 (168)
++.-+.+|+.++..|+.+
T Consensus 2033 ~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 175
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.69 E-value=1.6e+02 Score=25.92 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQ---NSLLRAENGSMKQKLSAFSGELTFKEAQYEEL 134 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~---~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L 134 (168)
+|..++..|+.+...++.+|..+... ...|..+-.+|+.+|..++.+..-.+.....+
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 176
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=31.81 E-value=1e+02 Score=19.77 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 035677 129 AQYEELKRERQILKQLCIMYNQ 150 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~~~~~q 150 (168)
.+...++.||.-||..|+.+-|
T Consensus 21 ~Ld~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 21 ALDPMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHhHh
Confidence 3456789999999999987555
No 177
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.64 E-value=25 Score=28.77 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHh
Q 035677 104 SLLRAENGSMKQKLS 118 (168)
Q Consensus 104 ~~L~~EN~~Lk~rL~ 118 (168)
..|..||..|+.-|.
T Consensus 46 ~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 46 ADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 356667777776554
No 178
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.61 E-value=95 Score=19.31 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS 118 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~ 118 (168)
...++.+++.++..+..+...+...+..+.......+.+-..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444444444444444443
No 179
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.25 E-value=2.1e+02 Score=23.28 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 035677 48 ELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108 (168)
Q Consensus 48 ~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~ 108 (168)
..+.-.+|+-|+.|..+-+++ +..|+.+++..+.|+.++.+.+....++...++.
T Consensus 159 ~asde~Ik~yLa~R~~~lK~k------l~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKGT------CHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999998877753 5678888888888888877777766655554443
No 180
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.73 E-value=1.1e+02 Score=19.61 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 035677 80 TEVKALQAEVAIMSPRIKYADCQNSLLRA 108 (168)
Q Consensus 80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~ 108 (168)
.+|..|..++..|+.+|+.|..+-..|+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666654444443
No 181
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.56 E-value=65 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677 108 AENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM 147 (168)
Q Consensus 108 ~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~ 147 (168)
.||..|..+|..+.. +...|+.|...||.++..
T Consensus 115 eEN~~Lh~~ie~l~e-------Ei~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 115 KENEKLHKEIEQKDN-------EIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 588999998888766 556666676677766643
No 182
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.05 E-value=2.2e+02 Score=25.53 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=4.5
Q ss_pred HHHHHHHhh
Q 035677 53 KLRRVLASR 61 (168)
Q Consensus 53 r~KRilaNR 61 (168)
.++..+++|
T Consensus 21 ~v~~~~~~R 29 (484)
T 3lss_A 21 IIRESQRRR 29 (484)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 444455554
No 183
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.88 E-value=1e+02 Score=19.71 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLL 106 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L 106 (168)
.-..||.-|..|+..|+.|...|.-|+.+...|
T Consensus 18 enaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 344567777777777777777777666655444
No 184
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=29.77 E-value=1.2e+02 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 035677 95 RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEE 133 (168)
Q Consensus 95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~ 133 (168)
-|++.+.+...|+.+|..|+.+|..|...+.--+.....
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~ 104 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDK 104 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777777777666655544444333
No 185
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=29.66 E-value=1.4e+02 Score=20.50 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
-|.|+..++..|..--..+-.+|+.++++-..|..+-..+..||..
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666665555555555543
No 186
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.52 E-value=2.3e+02 Score=23.10 Aligned_cols=42 Identities=10% Similarity=0.133 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
-.+++.+..+...|..++...+.+...+.+.-.+-++.++.+
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444444444444444333
No 187
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.58 E-value=54 Score=22.13 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=21.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 115 QKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
.++..|+....-+|.+...|+.++.+++.+..
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566777777788888888888888877764
No 188
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.14 E-value=1.1e+02 Score=20.20 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 104 SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 104 ~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
..|..-|..|-.+++.|+..+--+ +-||.||+.+..
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~-------eQEieRL~~LLk 49 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEK-------EQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 334444555555555554433332 235566665543
No 189
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.09 E-value=1.6e+02 Score=20.71 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 61 RQYSQKYRLKQL--HYIMQLETEVKALQAEVAIMSPRIKYA 99 (168)
Q Consensus 61 ReSA~RSR~RK~--~yi~eLE~kV~~Lq~En~~L~~~l~~l 99 (168)
++..+-..+|+. .-|+.-..++..|+.++......|..|
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444443 223333333444444444444444433
No 190
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.03 E-value=1.3e+02 Score=19.66 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 035677 135 KRERQILK 142 (168)
Q Consensus 135 ~~Ev~rLk 142 (168)
+.||..||
T Consensus 55 k~Ei~elr 62 (77)
T 3trt_A 55 KQESTEYR 62 (77)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 191
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.77 E-value=2.1e+02 Score=22.06 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677 79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAE---NGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146 (168)
Q Consensus 79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~E---N~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~ 146 (168)
|.....++.|...|++. ++++-|.|...+ ...+..+...|..+..=++...+.+..++..||.+.+
T Consensus 78 E~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTAS--LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555442 233334444333 2335556666666666677889999999999998864
No 192
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=27.49 E-value=1.3e+02 Score=19.73 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 035677 59 ASRQYSQKYRLKQLHYIMQLE 79 (168)
Q Consensus 59 aNReSA~RSR~RK~~yi~eLE 79 (168)
.||..++++|.|=++.++-..
T Consensus 8 knr~asrk~rakfkn~lqh~r 28 (63)
T 2c9l_Y 8 KNRVAARKSRAKFKQLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 699999999988766655443
No 193
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.48 E-value=1.8e+02 Score=25.67 Aligned_cols=13 Identities=23% Similarity=-0.023 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 035677 133 ELKRERQILKQLC 145 (168)
Q Consensus 133 ~L~~Ev~rLk~~~ 145 (168)
.+...|+.|+...
T Consensus 116 ~~~~~i~~l~~~i 128 (409)
T 1m1j_C 116 MNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3445555555443
No 194
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=27.37 E-value=2.4e+02 Score=23.83 Aligned_cols=73 Identities=8% Similarity=0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
.=+.+|..|-..+...+.+...+...|..+... |...-..|+.....|.....-..+..+.|++||+.|+..+
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776655443 2222233444444444444444556778888888777654
No 195
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.94 E-value=1.8e+02 Score=21.11 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEV 89 (168)
Q Consensus 77 eLE~kV~~Lq~En 89 (168)
++|.+...-...|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444443333333
No 196
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.62 E-value=1.9e+02 Score=21.25 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677 110 NGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ 143 (168)
Q Consensus 110 N~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~ 143 (168)
...|++++.-....-..-.+--|.+..|++.|..
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence 3444444444444333333445556666665554
No 197
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.22 E-value=71 Score=20.88 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSP 94 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~ 94 (168)
..|+.+|+.+|..|+.....|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 35899999999999987776654
No 198
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=25.75 E-value=25 Score=20.32 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
|..||.++..|+...+....+|..|+
T Consensus 2 iaaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555555543
No 199
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.58 E-value=2.2e+02 Score=21.13 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHH
Q 035677 85 LQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF-SGELTFKEAQYEELKRERQIL 141 (168)
Q Consensus 85 Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l-~q~~~lkda~~e~L~~Ev~rL 141 (168)
+..++..|..++..|...+..|......++.....+ .....=+..+.+.|+....++
T Consensus 48 ~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~ 105 (155)
T 2oto_A 48 DFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEAL 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333 222222333344444444444
No 200
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=24.57 E-value=1.2e+02 Score=18.13 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 035677 82 VKALQAEVAIMSP 94 (168)
Q Consensus 82 V~~Lq~En~~L~~ 94 (168)
|..|+.+|..|..
T Consensus 22 VR~LE~~N~~Le~ 34 (39)
T 1gk7_A 22 VRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334433333333
No 201
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.27 E-value=1.1e+02 Score=23.33 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677 111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145 (168)
Q Consensus 111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~ 145 (168)
..+..+...|..+..=++++.+.+...+..||.+.
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666677777778888887765
No 202
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=24.12 E-value=1.4e+02 Score=18.96 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
++...+..|+.+...+...+....+++..|.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444444444443
No 203
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.00 E-value=1.7e+02 Score=19.84 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
|...|..|..|..+|..++...+++...+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766665554
No 204
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.67 E-value=1.5e+02 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 035677 105 LLRAENGSMKQKLSAFS 121 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~ 121 (168)
.|..++..|...+..|.
T Consensus 61 ~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555444
No 205
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.53 E-value=2.1e+02 Score=20.52 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 70 KQLHYIMQLETEVKALQ 86 (168)
Q Consensus 70 RK~~yi~eLE~kV~~Lq 86 (168)
=.-.++.+|+.+|..++
T Consensus 26 e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 26 DLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555433
No 206
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.34 E-value=2e+02 Score=20.38 Aligned_cols=21 Identities=10% Similarity=0.298 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~ 97 (168)
.|+..+..|+.....+..++.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333
No 207
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.99 E-value=2.1e+02 Score=20.93 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYAD 100 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~ 100 (168)
+|..+|..|..++..+..++..+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333
No 208
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=22.68 E-value=1.6e+02 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 71 QLHYIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 71 K~~yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
|-..|.+||.++..++.-.+.+...+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve 30 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVE 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345678888888887776655444443
No 209
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.23 E-value=2.1e+02 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSP 94 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~ 94 (168)
+..+.+|..++.+|+.+|..|..
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 210
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.92 E-value=4.3e+02 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035677 129 AQYEELKRERQILKQLCIM 147 (168)
Q Consensus 129 a~~e~L~~Ev~rLk~~~~~ 147 (168)
...+.|+..|+.|......
T Consensus 175 ~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777778888777654
No 211
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=21.62 E-value=25 Score=21.05 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=17.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 116 KLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 116 rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
+|.+.+.+.+....+-|+++.|++.+|
T Consensus 10 klravenelhynkslleevkdelqkmr 36 (38)
T 1c94_A 10 KLRAVENELHYNKSLLEEVKDELQKMR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 455566666666666777777776554
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.41 E-value=1.7e+02 Score=25.64 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677 78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL 117 (168)
Q Consensus 78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL 117 (168)
|..++..|+.+...|..+...+..+...+..|-..++.++
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~ 86 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEV 86 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 213
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.38 E-value=1.8e+02 Score=25.27 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIK-YADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEEL 134 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~-~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L 134 (168)
++..++..|+.+...++.+|. .-..+...|..+-..|+.+|..++.+..-.+.....+
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 214
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.27 E-value=2.2e+02 Score=19.92 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 035677 106 LRAENGSMKQKLSAFSGEL 124 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~q~~ 124 (168)
|--|-+.|+.++..|+.+.
T Consensus 24 L~qEi~~Lr~kv~elEnEr 42 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENER 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 215
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.10 E-value=1.4e+02 Score=25.10 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035677 81 EVKALQAEVAIMSPRIKYADCQ 102 (168)
Q Consensus 81 kV~~Lq~En~~L~~~l~~l~~~ 102 (168)
++..|+.++..|..++..|+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 216
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.07 E-value=3.2e+02 Score=24.92 Aligned_cols=17 Identities=18% Similarity=-0.089 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 130 QYEELKRERQILKQLCI 146 (168)
Q Consensus 130 ~~e~L~~Ev~rLk~~~~ 146 (168)
..+.+..+|+||=....
T Consensus 140 ~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 140 SIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666655443
No 217
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.06 E-value=2e+02 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677 77 QLETEVKALQAEVAIMSPRIKYADCQNSLLR 107 (168)
Q Consensus 77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~ 107 (168)
+|...|..|..|..+|..++...+++...+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777776665554
No 218
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.93 E-value=58 Score=26.65 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 035677 105 LLRAENGSMKQKLSAFSG 122 (168)
Q Consensus 105 ~L~~EN~~Lk~rL~~l~q 122 (168)
.|..||.+++.+|..|..
T Consensus 159 ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 159 QLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555555544443
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.58 E-value=77 Score=27.91 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEV----KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142 (168)
Q Consensus 72 ~~yi~eLE~kV----~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk 142 (168)
+.++++|+.+. ..|..+...++.+ .+......|..|...|+..+..+..+..........++.||..++
T Consensus 1 ~~~~~~l~~~~~~~~~~l~~ei~~~~~~--~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 1 MATLEELDAQTLPGDDELDQEILNLSTQ--ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHhhhccCcchHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 220
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.57 E-value=2.1e+02 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 74 YIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 74 yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
-|.+||.++.....++..|..+++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554444443
No 221
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.23 E-value=17 Score=26.19 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=23.8
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 035677 44 TEDRELEAKKLRRVLASRQYSQKYRLKQLH 73 (168)
Q Consensus 44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~ 73 (168)
.+.....-+.+||--.||.+|++-|-||+.
T Consensus 58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455678899999999999999988853
Done!