Query 035677
Match_columns 168
No_of_seqs 133 out of 470
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 08:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 77.6 1.6 0.00012 26.9 4.3 25 72-96 32-56 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 74.8 3.5 0.00025 26.7 5.7 10 108-117 73-82 (88)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 62.1 7 0.00051 24.8 5.0 59 62-120 12-76 (80)
4 d2oa5a1 d.362.1.1 (A:7-102) Un 59.2 2.7 0.0002 28.9 2.5 24 75-98 4-27 (96)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 58.6 10 0.00076 23.7 5.4 20 72-91 46-65 (79)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 57.1 20 0.0015 22.7 7.2 6 74-79 24-29 (88)
7 d1seta1 a.2.7.1 (A:1-110) Sery 55.0 21 0.0015 23.5 6.7 17 106-122 69-85 (110)
8 d1nkpb_ a.38.1.1 (B:) Max prot 54.2 8.8 0.00064 24.3 4.4 15 106-120 66-80 (83)
9 d1lrza1 a.2.7.4 (A:245-309) Me 45.2 31 0.0023 21.4 7.8 25 73-97 3-27 (65)
10 d2oa5a1 d.362.1.1 (A:7-102) Un 39.5 8 0.00058 26.4 2.3 22 98-119 6-27 (96)
11 d1sknp_ a.37.1.1 (P:) Skn-1 {C 37.8 8.3 0.0006 25.2 2.1 29 49-77 45-73 (74)
12 d1fxkc_ a.2.5.1 (C:) Prefoldin 31.4 66 0.0048 21.2 6.9 29 75-103 3-31 (133)
13 d1seta1 a.2.7.1 (A:1-110) Sery 26.8 76 0.0055 20.4 9.3 17 75-91 30-46 (110)
14 d1am9a_ a.38.1.1 (A:) SREBP-1a 22.8 50 0.0036 20.4 4.0 25 73-97 50-74 (80)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.56 E-value=1.6 Score=26.91 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAIMSPRI 96 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~L~~~l 96 (168)
..||..|+.++..|+.|+..|....
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999888887776554
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.82 E-value=3.5 Score=26.71 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 035677 108 AENGSMKQKL 117 (168)
Q Consensus 108 ~EN~~Lk~rL 117 (168)
.++..|..+|
T Consensus 73 ~~~~~L~~~l 82 (88)
T d1nkpa_ 73 KRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.13 E-value=7 Score=24.83 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677 62 QYSQKYRLKQLHYIMQLETEVKALQ---AEVAIMSPR---IKYADCQNSLLRAENGSMKQKLSAF 120 (168)
Q Consensus 62 eSA~RSR~RK~~yi~eLE~kV~~Lq---~En~~L~~~---l~~l~~~~~~L~~EN~~Lk~rL~~l 120 (168)
.+-++-|.+=..++++|..-|-... .....|... |..|+.+...|..++..|+..+..+
T Consensus 12 ~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444556666665442111 122223322 3445666667777777777666554
No 4
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=59.20 E-value=2.7 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKY 98 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~ 98 (168)
++||..++..|+.||..|..+|..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888888888887776653
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.61 E-value=10 Score=23.72 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035677 72 LHYIMQLETEVKALQAEVAI 91 (168)
Q Consensus 72 ~~yi~eLE~kV~~Lq~En~~ 91 (168)
..||..|+..+..|..+...
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~ 65 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQ 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555544433
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.10 E-value=20 Score=22.74 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.6
Q ss_pred HHHHHH
Q 035677 74 YIMQLE 79 (168)
Q Consensus 74 yi~eLE 79 (168)
++++|-
T Consensus 24 ~f~~Lr 29 (88)
T d1nkpa_ 24 SFFALR 29 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=54.99 E-value=21 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhhh
Q 035677 106 LRAENGSMKQKLSAFSG 122 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l~q 122 (168)
|..+-..|+.++..++.
T Consensus 69 l~~~~k~lk~~i~~le~ 85 (110)
T d1seta1 69 LIARGKALGEEAKRLEE 85 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 8
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.22 E-value=8.8 Score=24.33 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q 035677 106 LRAENGSMKQKLSAF 120 (168)
Q Consensus 106 L~~EN~~Lk~rL~~l 120 (168)
|..+|..|..+|..|
T Consensus 66 l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 66 LKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555555443
No 9
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=45.16 E-value=31 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
.||..|+.+...|..+...+...|.
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~le 27 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDIE 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999888887775
No 10
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=39.55 E-value=8 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhh
Q 035677 98 YADCQNSLLRAENGSMKQKLSA 119 (168)
Q Consensus 98 ~l~~~~~~L~~EN~~Lk~rL~~ 119 (168)
.|..+...|.+||+.||.+|..
T Consensus 6 eLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 6 EMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556688999999999875
No 11
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=37.79 E-value=8.3 Score=25.17 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 035677 49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQ 77 (168)
Q Consensus 49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~e 77 (168)
.=-+-+||-=.|+..|+.-|-||..-+++
T Consensus 45 ~lirDIRRRGKNKvAAqnCRKRKld~~d~ 73 (74)
T d1sknp_ 45 QLIRKIRRRGKNKVAARTCRQRRTDRHDK 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence 33566777778999999999999876654
No 12
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.39 E-value=66 Score=21.18 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677 75 IMQLETEVKALQAEVAIMSPRIKYADCQN 103 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~ 103 (168)
+++|..++..|+.+...|..++..++...
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~ 31 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATI 31 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777665433
No 13
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=26.84 E-value=76 Score=20.42 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035677 75 IMQLETEVKALQAEVAI 91 (168)
Q Consensus 75 i~eLE~kV~~Lq~En~~ 91 (168)
+-+|..+...|+.+...
T Consensus 30 i~~ld~~rr~l~~~~e~ 46 (110)
T d1seta1 30 LLALDREVQELKKRLQE 46 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 14
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.77 E-value=50 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677 73 HYIMQLETEVKALQAEVAIMSPRIK 97 (168)
Q Consensus 73 ~yi~eLE~kV~~Lq~En~~L~~~l~ 97 (168)
.||..|+.++..|..++..|...+.
T Consensus 50 ~yI~~L~~~~~~L~~e~~~lk~~~~ 74 (80)
T d1am9a_ 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555555544443
Done!