Query 035678
Match_columns 231
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Mar 29 05:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00011 HSP20: Hsp20/alpha cr 97.6 0.00027 5.8E-09 48.9 6.9 79 6-86 2-91 (102)
2 cd06498 ACD_alphaB-crystallin_ 97.4 0.00023 5.1E-09 50.7 4.6 62 128-189 18-84 (84)
3 cd06464 ACD_sHsps-like Alpha-c 97.3 0.00029 6.4E-09 45.9 3.9 59 129-188 19-88 (88)
4 cd06478 ACD_HspB4-5-6 Alpha-cr 97.3 0.00036 7.9E-09 49.2 4.3 61 128-188 18-83 (83)
5 cd06479 ACD_HspB7_like Alpha c 97.3 0.0003 6.6E-09 50.5 3.7 61 128-188 19-81 (81)
6 cd06497 ACD_alphaA-crystallin_ 97.2 0.00063 1.4E-08 48.5 4.5 60 129-188 22-86 (86)
7 PF00011 HSP20: Hsp20/alpha cr 97.2 0.0011 2.3E-08 45.9 5.3 64 129-193 19-92 (102)
8 cd06480 ACD_HspB8_like Alpha-c 97.1 0.00086 1.9E-08 49.7 4.9 59 128-186 26-89 (91)
9 cd06479 ACD_HspB7_like Alpha c 97.1 0.0015 3.2E-08 47.0 6.0 73 9-82 6-81 (81)
10 cd00298 ACD_sHsps_p23-like Thi 97.1 0.0022 4.7E-08 39.2 5.9 75 6-82 1-80 (80)
11 cd06476 ACD_HspB2_like Alpha c 97.1 0.00096 2.1E-08 47.8 4.8 59 129-188 19-83 (83)
12 cd06526 metazoan_ACD Alpha-cry 97.1 0.00058 1.3E-08 47.1 3.3 61 128-188 18-83 (83)
13 cd06478 ACD_HspB4-5-6 Alpha-cr 97.0 0.0023 5E-08 45.1 6.0 74 8-82 4-83 (83)
14 KOG3591 Alpha crystallins [Pos 96.9 0.0019 4.2E-08 52.4 5.4 66 128-194 83-154 (173)
15 cd06477 ACD_HspB3_Like Alpha c 96.8 0.0029 6.4E-08 45.8 5.0 59 129-187 19-82 (83)
16 cd06472 ACD_ScHsp26_like Alpha 96.7 0.0021 4.5E-08 44.9 3.8 59 129-188 21-92 (92)
17 cd06481 ACD_HspB9_like Alpha c 96.6 0.0028 6E-08 45.3 3.7 58 129-186 19-85 (87)
18 cd06526 metazoan_ACD Alpha-cry 96.5 0.0095 2.1E-07 41.1 5.9 70 12-82 8-83 (83)
19 cd06472 ACD_ScHsp26_like Alpha 96.5 0.0097 2.1E-07 41.6 6.0 76 5-82 3-92 (92)
20 COG0071 IbpA Molecular chapero 96.5 0.0039 8.4E-08 47.3 4.2 86 101-193 40-137 (146)
21 PRK10743 heat shock protein Ib 96.5 0.0034 7.4E-08 48.9 4.0 58 129-189 57-124 (137)
22 cd06475 ACD_HspB1_like Alpha c 96.5 0.0051 1.1E-07 43.9 4.4 59 129-187 22-85 (86)
23 cd06471 ACD_LpsHSP_like Group 96.5 0.0092 2E-07 41.3 5.6 76 4-82 3-93 (93)
24 cd06498 ACD_alphaB-crystallin_ 96.4 0.012 2.6E-07 41.9 6.0 74 9-83 5-84 (84)
25 cd06477 ACD_HspB3_Like Alpha c 96.4 0.016 3.4E-07 42.0 6.4 74 7-81 3-82 (83)
26 cd06497 ACD_alphaA-crystallin_ 96.3 0.015 3.3E-07 41.4 6.1 74 8-82 7-86 (86)
27 cd06464 ACD_sHsps-like Alpha-c 96.2 0.021 4.6E-07 37.1 5.9 75 6-82 2-88 (88)
28 PRK11597 heat shock chaperone 96.2 0.0052 1.1E-07 48.6 3.4 58 129-189 55-122 (142)
29 cd06470 ACD_IbpA-B_like Alpha- 96.1 0.0097 2.1E-07 42.0 4.3 58 128-188 22-90 (90)
30 cd06482 ACD_HspB10 Alpha cryst 96.1 0.0064 1.4E-07 44.5 3.5 57 129-185 20-84 (87)
31 cd06470 ACD_IbpA-B_like Alpha- 96.0 0.031 6.7E-07 39.4 6.4 74 5-82 5-90 (90)
32 cd06475 ACD_HspB1_like Alpha c 96.0 0.026 5.7E-07 40.2 6.0 73 7-80 6-84 (86)
33 cd06469 p23_DYX1C1_like p23_li 95.9 0.047 1E-06 36.0 6.5 70 6-84 1-70 (78)
34 cd06471 ACD_LpsHSP_like Group 95.9 0.013 2.8E-07 40.6 3.8 58 129-188 22-93 (93)
35 cd06476 ACD_HspB2_like Alpha c 95.4 0.075 1.6E-06 38.0 6.3 72 8-81 4-82 (83)
36 cd00298 ACD_sHsps_p23-like Thi 94.9 0.044 9.6E-07 33.3 3.5 58 130-188 19-80 (80)
37 cd06463 p23_like Proteins cont 94.8 0.21 4.5E-06 31.7 6.7 76 6-85 1-76 (84)
38 PRK10743 heat shock protein Ib 93.9 0.32 6.8E-06 37.9 7.1 75 7-85 41-126 (137)
39 cd06481 ACD_HspB9_like Alpha c 93.7 0.16 3.5E-06 36.2 4.9 60 21-80 16-85 (87)
40 cd06480 ACD_HspB8_like Alpha-c 93.2 0.19 4.1E-06 37.3 4.6 65 15-80 17-89 (91)
41 PRK11597 heat shock chaperone 92.3 0.65 1.4E-05 36.8 6.8 77 5-85 37-124 (142)
42 PF04969 CS: CS domain; Inter 92.2 1.5 3.2E-05 27.8 7.3 76 3-81 2-78 (79)
43 cd06466 p23_CS_SGT1_like p23_l 90.4 1.4 3E-05 29.1 5.9 76 6-85 2-77 (84)
44 cd06482 ACD_HspB10 Alpha cryst 90.2 1 2.3E-05 32.9 5.6 67 12-79 9-84 (87)
45 COG0071 IbpA Molecular chapero 89.5 2 4.3E-05 32.6 6.9 79 6-86 45-136 (146)
46 cd06467 p23_NUDC_like p23_like 88.1 2.4 5.2E-05 28.2 5.9 76 5-85 2-77 (85)
47 cd06463 p23_like Proteins cont 86.6 2.8 6.1E-05 26.4 5.3 58 130-191 19-76 (84)
48 cd06469 p23_DYX1C1_like p23_li 84.5 3.7 8.1E-05 26.9 5.3 54 128-190 17-70 (78)
49 cd06493 p23_NUDCD1_like p23_NU 80.6 10 0.00023 26.1 6.5 74 5-83 2-75 (85)
50 KOG0710 Molecular chaperone (s 78.1 6.5 0.00014 31.9 5.6 86 4-92 85-191 (196)
51 cd06494 p23_NUDCD2_like p23-li 77.5 10 0.00022 27.8 6.0 73 5-83 9-81 (93)
52 KOG3591 Alpha crystallins [Pos 73.8 6.2 0.00013 32.2 4.4 62 22-84 82-150 (173)
53 cd06465 p23_hB-ind1_like p23_l 73.2 24 0.00052 25.1 6.9 76 4-84 3-78 (108)
54 cd06489 p23_CS_hSgt1_like p23_ 63.4 40 0.00088 22.8 6.1 73 6-83 2-75 (84)
55 cd06467 p23_NUDC_like p23_like 34.6 1.4E+02 0.0029 19.7 5.1 58 127-190 19-76 (85)
56 KOG0710 Molecular chaperone (s 32.7 1.2E+02 0.0026 24.6 5.3 61 130-191 107-182 (196)
57 PF09803 DUF2346: Uncharacteri 31.9 5.2 0.00011 29.6 -2.5 20 51-70 11-35 (80)
58 cd06495 p23_NUDCD3_like p23-li 30.6 89 0.0019 23.4 3.9 75 4-83 7-85 (102)
59 cd06468 p23_CacyBP p23_like do 27.4 2E+02 0.0043 19.4 6.4 80 3-84 3-84 (92)
60 KOG2987 Fatty acid desaturase 26.8 16 0.00035 33.7 -0.8 17 46-62 103-119 (324)
61 cd06492 p23_mNUDC_like p23-lik 26.8 1.3E+02 0.0028 21.4 4.0 73 5-83 2-77 (87)
62 COG2368 Aromatic ring hydroxyl 25.1 1.1E+02 0.0024 29.7 4.4 59 127-185 164-232 (493)
63 PF04681 Bys1: Blastomyces yea 24.4 1E+02 0.0023 25.5 3.6 46 145-191 101-147 (155)
64 PF06214 SLAM: Signaling lymph 23.7 26 0.00057 28.9 0.0 30 70-99 1-30 (126)
65 KOG2650 Zinc carboxypeptidase 23.2 38 0.00082 31.5 0.9 33 144-177 192-231 (418)
66 PF11681 DUF3277: Protein of u 22.3 42 0.00092 27.3 0.9 26 67-92 55-80 (146)
67 cd08047 TAF7 TATA Binding Prot 21.7 97 0.0021 24.5 2.8 47 159-213 106-154 (162)
68 PF00394 Cu-oxidase: Multicopp 20.9 1.3E+02 0.0028 22.6 3.3 49 11-61 68-116 (159)
69 PF12398 DUF3660: Receptor ser 20.7 56 0.0012 22.5 1.1 24 114-137 15-39 (42)
70 PF05534 HicB: HicB family; I 20.7 26 0.00056 23.5 -0.5 13 39-51 35-47 (51)
71 PHA03357 Alkaline exonuclease; 20.5 59 0.0013 25.2 1.3 37 158-194 37-73 (81)
No 1
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.64 E-value=0.00027 Score=48.89 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=59.1
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccc------cccc-----cceeeeeecccccCCCccccccccce
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLN-----QYFGMYVNLPVGLNPDSFETSMDQTG 74 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeag------tsln-----qyfgmyvnlpvglnpdsfetsmdqtg 74 (231)
|.|+++.+...+.++ |-..+.++|-++++.|.|+=+-. ..+. ..|---+.||.+.+++..+.++ ..|
T Consensus 2 i~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 79 (102)
T PF00011_consen 2 IKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG 79 (102)
T ss_dssp EEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred eEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence 567788888888776 88899999999999999974433 2222 2566678999999999999999 999
Q ss_pred eeEEEeeceeec
Q 035678 75 LLTVRFKKLMPI 86 (231)
Q Consensus 75 lltvrfkklmpi 86 (231)
+|+|++.|.-+-
T Consensus 80 vL~I~~pk~~~~ 91 (102)
T PF00011_consen 80 VLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEBSSSC
T ss_pred EEEEEEEccccc
Confidence 999999876544
No 2
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.44 E-value=0.00023 Score=50.71 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=49.4
Q ss_pred ccccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK 189 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkk 189 (231)
-++||+-|-|.++...|-|++-.+..+.+ -.-+|.||-+|+++....++.+-|||+|+..||
T Consensus 18 ~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 18 FSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 35789999999998888887543332222 245789999999999999999889999999875
No 3
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.35 E-value=0.00029 Score=45.91 Aligned_cols=59 Identities=42% Similarity=0.658 Sum_probs=48.8
Q ss_pred cccceEEEEeeceeEEeeccccccc-----------cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKK-----------EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekk-----------eggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
+++|+-|=+.++...|-|+.-++.. .+.-.-+|-||++++++....+++| |+|+|++.|
T Consensus 19 ~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~pk 88 (88)
T cd06464 19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLPK 88 (88)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEcC
Confidence 4678999998888888888765443 4556678899999999999999999 999999864
No 4
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=97.32 E-value=0.00036 Score=49.20 Aligned_cols=61 Identities=30% Similarity=0.458 Sum_probs=47.8
Q ss_pred ccccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
-++||+-|-|-+.+..|-|++-.++.+++. .-+|.||.+|+++....++..-|||+|+..|
T Consensus 18 ~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 18 FSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred CCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 357899999999888888875433322222 3578999999999999999989999999864
No 5
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.29 E-value=0.0003 Score=50.55 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=48.4
Q ss_pred ccccceEEEEeeceeEEeecccccccc--CCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKKE--GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekke--ggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
-++||+-|-|.++...|-|+.-.+... |.-+-+|.||..|+++....++..-|||||+..+
T Consensus 19 ~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 19 FSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 467899999999988888875433211 3346678999999999999999888999999863
No 6
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.19 E-value=0.00063 Score=48.54 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=47.4
Q ss_pred cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
+++|+-|-|.|+...|-|+.-.+..+++- .-+|.||.+|+++....++..-|||+|+..|
T Consensus 22 ~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 22 SPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86 (86)
T ss_pred CHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence 47899999999988888875333222221 2379999999999999999888999999865
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.17 E-value=0.0011 Score=45.91 Aligned_cols=64 Identities=34% Similarity=0.568 Sum_probs=48.9
Q ss_pred cccceEEEEeeceeEEeeccccccccCCc----------eeeeeecCCCCCCCcccccCCCceEEEEeecCCCCc
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS----------CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKD 193 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekkeggs----------cesfvlphgvnpdgfetsmddpgvltvtfkkkpskd 193 (231)
.++|+-|-+-++...|.|+.-.+..++.. ..+|-||-+++++..+.++ .-|+|+|++.|++...
T Consensus 19 ~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~~pk~~~~~ 92 (102)
T PF00011_consen 19 DKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTITIPKKEEEE 92 (102)
T ss_dssp -GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEEEEBSSSCT
T ss_pred ChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEEEEcccccc
Confidence 57899999999998888887734444433 3478999999999999999 7799999999987764
No 8
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=97.14 E-value=0.00086 Score=49.71 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=50.0
Q ss_pred ccccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEe
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTF 186 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtf 186 (231)
-+.|||-|-|.|+...|-|++-.+..++|. +-+|.||.+|+++....++..-|+|+|+.
T Consensus 26 F~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 26 FKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 367899999999998888987766556654 45788999999999999999999999974
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.14 E-value=0.0015 Score=46.99 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=54.9
Q ss_pred cCceEEEEeecCccccccceEEEEeccceeeecccccccccceeee---eecccccCCCccccccccceeeEEEeec
Q 035678 9 DENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMY---VNLPVGLNPDSFETSMDQTGLLTVRFKK 82 (231)
Q Consensus 9 dentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmy---vnlpvglnpdsfetsmdqtglltvrfkk 82 (231)
+++.+.+.+-+ .|-+.|-+.|.++++.|-|+-|--.+-..++|-| +.||..++|++...++...|.|||+..+
T Consensus 6 ~~~~~~v~~dl-pG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 6 LGDTYQFAVDV-SDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCCeEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 33444444443 3888999999999999999876433222344544 6899999999999999999999998753
No 10
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=97.14 E-value=0.0022 Score=39.21 Aligned_cols=75 Identities=25% Similarity=0.475 Sum_probs=60.1
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccc-----cccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS-----LNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts-----lnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
|.+.++.+.+.+++..-. .+.++|.+.+..|.|+=....+ -+.-|-.-++||-.++|+.....++. |.|++++
T Consensus 1 ~~q~~~~v~i~i~~~~~~-~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVK-KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEITL 78 (80)
T ss_pred CEEcCCEEEEEEECCCCC-HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEE
Confidence 778889999999887654 8889999999999998665432 23445556679999999988888886 9999998
Q ss_pred ec
Q 035678 81 KK 82 (231)
Q Consensus 81 kk 82 (231)
.|
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 75
No 11
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=97.12 E-value=0.00096 Score=47.76 Aligned_cols=59 Identities=17% Similarity=0.392 Sum_probs=46.8
Q ss_pred cccceEEEEeeceeEEeeccccccccCCc------eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS------CESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekkeggs------cesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
++||+-|-|.|+...|-|+.- ++.++.+ .-+|.||.+|+++....++.+-|||+|+..|
T Consensus 19 ~~edi~V~v~~~~L~I~g~~~-~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 19 TPDEITVRTVDNLLEVSARHP-QRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CHHHeEEEEECCEEEEEEEEc-ceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 578999999999877778753 3333322 3478999999999999999989999999753
No 12
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.08 E-value=0.00058 Score=47.12 Aligned_cols=61 Identities=31% Similarity=0.527 Sum_probs=49.3
Q ss_pred ccccceEEEEeeceeEEeeccccccc-----cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKK-----EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekk-----eggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
-+++|+-|-|.++...|-|++-.+.. .+.-..+|.||..|+++....++.+-|+|+|+..|
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 46789999999988888888754432 12335678999999999999999999999999864
No 13
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=97.03 E-value=0.0023 Score=45.12 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=58.4
Q ss_pred ccCceEEEEeecCccccccceEEEEeccceeeeccc------ccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678 8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK 81 (231)
Q Consensus 8 edentvlfklplasgtkqegvkvaiedhklfiseea------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk 81 (231)
++++.+.+.+-+. |-+.+.++|.+++..|.|+=+. +....+-|---+.||.++++++...++.+.|+|+|+..
T Consensus 4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 4666677777764 8999999999999999986432 11223347778999999999999999999999999875
Q ss_pred c
Q 035678 82 K 82 (231)
Q Consensus 82 k 82 (231)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 4
No 14
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0019 Score=52.39 Aligned_cols=66 Identities=32% Similarity=0.546 Sum_probs=52.4
Q ss_pred ccccceEEEEeeceeEEeecccccc-ccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeecCCCCch
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEK-KEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDG 194 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnek-keggs-----cesfvlphgvnpdgfetsmddpgvltvtfkkkpskdg 194 (231)
-+-|+|+|=++|...+|=|++ +|+ .+.|. +-.|.||-||+|+-..++...-|+|||+-.|++.+..
T Consensus 83 F~PeEl~Vk~~~~~l~V~gkH-eer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~ 154 (173)
T KOG3591|consen 83 FKPEELKVKTDDNTLEVEGKH-EEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD 154 (173)
T ss_pred CcccceEEEeCCCEEEEEeee-ccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc
Confidence 367899999999955555555 555 44443 3458899999999999999999999999999887654
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=96.78 E-value=0.0029 Score=45.75 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=49.8
Q ss_pred cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEee
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFK 187 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfk 187 (231)
++||+-|-|-|....|-|++-.++.+++. +-+|.||-+|+++..+.++.+-|||+|+-+
T Consensus 19 ~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 19 RPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred CHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 47899999999999999987665555555 347889999999999999878899999864
No 16
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.73 E-value=0.0021 Score=44.93 Aligned_cols=59 Identities=37% Similarity=0.549 Sum_probs=45.0
Q ss_pred cccceEEEEeec-eeEEeeccccc------------cccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 129 KKEDLVVGVVDR-QFLIIGQQLNE------------KKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 129 kkedlvvgvvdr-qfliigqqlne------------kkeggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
+++|+-|-|-+. ...|-|+.-++ ...|.-..+|-||..|+++....+++| |||+|++.|
T Consensus 21 ~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~lPK 92 (92)
T cd06472 21 KKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVPK 92 (92)
T ss_pred ChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEecC
Confidence 478999988765 45566754322 223455667899999999999999998 999999865
No 17
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=96.60 E-value=0.0028 Score=45.32 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=46.4
Q ss_pred cccceEEEEeeceeEEeeccccccc-c--------CCceeeeeecCCCCCCCcccccCCCceEEEEe
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKK-E--------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTF 186 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekk-e--------ggscesfvlphgvnpdgfetsmddpgvltvtf 186 (231)
+++|+-|-|-++...|-|++-.+.. + |.-.-+|.||+.|+++....++..-|||+|+.
T Consensus 19 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 19 SPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred ChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 4779999999999999898643322 2 22345789999999999999998889999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.52 E-value=0.0095 Score=41.07 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=54.9
Q ss_pred eEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEeec
Q 035678 12 TVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKK 82 (231)
Q Consensus 12 tvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkk 82 (231)
...+.+.|. |-+.+-++|.+++..|.|+=+... ...+.|---+.||..+++++...++...|+|+|+..|
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 444555554 788999999999999999855322 2234566678999999999999999999999999754
No 19
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.52 E-value=0.0097 Score=41.57 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=55.7
Q ss_pred cccccCceEEEEeecCccccccceEEEEecc-ceeeecccccc-------------cccceeeeeecccccCCCcccccc
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDH-KLFISEEAGTS-------------LNQYFGMYVNLPVGLNPDSFETSM 70 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedh-klfiseeagts-------------lnqyfgmyvnlpvglnpdsfetsm 70 (231)
-|.|+++.+...+-|+ |-+.+.++|.+++. .|.|+-+.... -...|---+.||..+++++...++
T Consensus 3 dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 3 DWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred cEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 4667777777777665 56778999999865 68887543110 122455567999999999999999
Q ss_pred ccceeeEEEeec
Q 035678 71 DQTGLLTVRFKK 82 (231)
Q Consensus 71 dqtglltvrfkk 82 (231)
+. |+|++++.|
T Consensus 82 ~n-GvL~I~lPK 92 (92)
T cd06472 82 EN-GVLTVTVPK 92 (92)
T ss_pred EC-CEEEEEecC
Confidence 75 999999865
No 20
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0039 Score=47.26 Aligned_cols=86 Identities=28% Similarity=0.448 Sum_probs=61.6
Q ss_pred cCCCcCCCCCccccCceeecccCCCccccccceEEEEeeceeEEeeccccccc------------cCCceeeeeecCCCC
Q 035678 101 MAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKK------------EGGSCESFVLPHGVN 168 (231)
Q Consensus 101 mapmgwlepddkeangvihskaglsaetkkedlvvgvvdrqfliigqqlnekk------------eggscesfvlphgvn 168 (231)
..|+-+.+-|| .-=|.-.-+|++ |+|+-|=+.+.++.|-|+.-++.+ .|.-=..|.||..|+
T Consensus 40 ~P~vdi~e~~~--~~~I~~elPG~~----kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 40 TPPVDIEETDD--EYRITAELPGVD----KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCcEEEEEcCC--EEEEEEEcCCCC----hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc
Confidence 34555666555 333444556664 789999999999999999876432 122235789999999
Q ss_pred CCCcccccCCCceEEEEeecCCCCc
Q 035678 169 PDGFETSMDDPGVLTVTFKKKPSKD 193 (231)
Q Consensus 169 pdgfetsmddpgvltvtfkkkpskd 193 (231)
|+.-..+.. -|||+|++.|.....
T Consensus 114 ~~~~~A~~~-nGvL~I~lpk~~~~~ 137 (146)
T COG0071 114 PEVIKAKYK-NGLLTVTLPKAEPEE 137 (146)
T ss_pred ccceeeEee-CcEEEEEEecccccc
Confidence 998666654 599999999877654
No 21
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.50 E-value=0.0034 Score=48.86 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=42.9
Q ss_pred cccceEEEEeeceeEEeecccccccc----------CCceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKE----------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK 189 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekke----------ggscesfvlphgvnpdgfetsmddpgvltvtfkkk 189 (231)
+|+|+-|-|-|....|-|++-.+.++ |.-.-+|.||.+|+++. .++. -|||+|++.|.
T Consensus 57 ~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~-dGVL~I~lPK~ 124 (137)
T PRK10743 57 AESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV-NGLLYIDLERV 124 (137)
T ss_pred CHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe-CCEEEEEEeCC
Confidence 47899999988877777875443322 22334899999999993 5555 59999999985
No 22
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.47 E-value=0.0051 Score=43.89 Aligned_cols=59 Identities=32% Similarity=0.514 Sum_probs=46.7
Q ss_pred cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEee
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFK 187 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfk 187 (231)
+++||-|-|.+....|-|+.-.++.+++. +.+|.||-.|+++..+..+..-|||+|+..
T Consensus 22 ~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 22 APEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred CHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEec
Confidence 57899999988877777876433333433 457899999999999999998899999863
No 23
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=96.46 E-value=0.0092 Score=41.32 Aligned_cols=76 Identities=22% Similarity=0.475 Sum_probs=55.7
Q ss_pred ccccccCceEEEEeecCccccccceEEEEeccceeeeccccc----------cc--ccceeee---eecccccCCCcccc
Q 035678 4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT----------SL--NQYFGMY---VNLPVGLNPDSFET 68 (231)
Q Consensus 4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagt----------sl--nqyfgmy---vnlpvglnpdsfet 68 (231)
+-|.|+++.+.+.+.|+ |-+.+-++|.+++..|.|+=+.-. -+ ..++|-| +.|| ..+++....
T Consensus 3 ~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 3 TDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred eeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 34567778888888877 778889999999999999533221 01 1134444 6888 789999888
Q ss_pred ccccceeeEEEeec
Q 035678 69 SMDQTGLLTVRFKK 82 (231)
Q Consensus 69 smdqtglltvrfkk 82 (231)
++ +.|+|+|++.|
T Consensus 81 ~~-~dGvL~I~lPK 93 (93)
T cd06471 81 KY-ENGVLKITLPK 93 (93)
T ss_pred EE-ECCEEEEEEcC
Confidence 88 78999999865
No 24
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.42 E-value=0.012 Score=41.94 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=57.0
Q ss_pred cCceEEEEeecCccccccceEEEEeccceeeeccc------ccccccceeeeeecccccCCCccccccccceeeEEEeec
Q 035678 9 DENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKK 82 (231)
Q Consensus 9 dentvlfklplasgtkqegvkvaiedhklfiseea------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkk 82 (231)
+++.+.+.+-+ .|-+.+-++|.+++..|-|+=+. +....+-|---+.||.++++++...++++.|.|+|+..|
T Consensus 5 ~~~~~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDV-KHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 44555556654 68889999999999999987432 112233477778999999999999999999999999866
Q ss_pred e
Q 035678 83 L 83 (231)
Q Consensus 83 l 83 (231)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 3
No 25
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=96.36 E-value=0.016 Score=41.99 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=59.0
Q ss_pred cccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 7 eedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
+|+++...+++-| .|-+.|-++|.+++..|.|+=|... ...+-|.-.++||.+++++..+.++...|+|+|+-
T Consensus 3 ~e~~~~~~v~~dl-pG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDV-VQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEc-CCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 5667777776654 4788999999999999999855432 23346778899999999999999988999999975
Q ss_pred e
Q 035678 81 K 81 (231)
Q Consensus 81 k 81 (231)
+
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 4
No 26
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.31 E-value=0.015 Score=41.42 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=56.1
Q ss_pred ccCceEEEEeecCccccccceEEEEeccceeeecccc------cccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678 8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK 81 (231)
Q Consensus 8 edentvlfklplasgtkqegvkvaiedhklfiseeag------tslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk 81 (231)
|+++.+.+.+-+ .|-+.+-++|.++|..|-|+=+-. .-..+-|---+.||.+++++....++...|.|+|+..
T Consensus 7 e~~~~~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 7 SDRDKFTIYLDV-KHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EcCCEEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 455555556544 477889999999999999984321 1111237778899999999999999999999999876
Q ss_pred c
Q 035678 82 K 82 (231)
Q Consensus 82 k 82 (231)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 4
No 27
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.21 E-value=0.021 Score=37.10 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=53.8
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccc------------cccceeeeeecccccCCCccccccccc
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS------------LNQYFGMYVNLPVGLNPDSFETSMDQT 73 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts------------lnqyfgmyvnlpvglnpdsfetsmdqt 73 (231)
|.|+++.+.+.+-|. |-..+.++|.+.++.|.|+=+.... -..-|---+.||.+++++....+++.
T Consensus 2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~- 79 (88)
T cd06464 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN- 79 (88)
T ss_pred cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-
Confidence 345555566666554 4677899999999999998332211 12334444679999999999999988
Q ss_pred eeeEEEeec
Q 035678 74 GLLTVRFKK 82 (231)
Q Consensus 74 glltvrfkk 82 (231)
|+|+|++.|
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999864
No 28
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.18 E-value=0.0052 Score=48.55 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=43.2
Q ss_pred cccceEEEEeeceeEEeecccccccc----------CCceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKE----------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK 189 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekke----------ggscesfvlphgvnpdgfetsmddpgvltvtfkkk 189 (231)
+|+|+-|-|-+....|-|+.-.+.++ |.-+-+|.||..|+++ ..++ +-|||+|++.|+
T Consensus 55 ~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~ 122 (142)
T PRK11597 55 RQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN 122 (142)
T ss_pred CHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence 47899999988888888875333221 3345688999999998 4555 459999999885
No 29
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.14 E-value=0.0097 Score=41.98 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=42.1
Q ss_pred ccccceEEEEeeceeEEeeccccccc-----------cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKK-----------EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekk-----------eggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
-+|||+-|-+-+....|-|+.-.+.. .|.-.-+|-||++++.+ ..++ +-|||+|++.+
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~l~~ 90 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTIDLER 90 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEEEEC
Confidence 47889999998887777776544432 24445679999999986 4444 55999999863
No 30
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=96.14 E-value=0.0064 Score=44.45 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred cccceEEEEeeceeEEeecccccccc--------CCceeeeeecCCCCCCCcccccCCCceEEEE
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEKKE--------GGSCESFVLPHGVNPDGFETSMDDPGVLTVT 185 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnekke--------ggscesfvlphgvnpdgfetsmddpgvltvt 185 (231)
+++|+-|-|.|....|-|+.-.++.+ |.-.-+|.||.+|+++....++.+-|||++.
T Consensus 20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 47899999999999999986443332 2225678999999999999999999999985
No 31
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.02 E-value=0.031 Score=39.41 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=51.3
Q ss_pred cccccCceEEEEeecCccccccceEEEEeccceeeecccccc-------c-----ccceeeeeecccccCCCcccccccc
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS-------L-----NQYFGMYVNLPVGLNPDSFETSMDQ 72 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagts-------l-----nqyfgmyvnlpvglnpdsfetsmdq 72 (231)
.|+.+++...+.+-|. |-+.+.++|.+++..|.|+=+--.. + ...|---+.||.+.+.+ ..-=.
T Consensus 5 i~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~---~A~~~ 80 (90)
T cd06470 5 IEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK---GAELE 80 (90)
T ss_pred eEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC---eeEEe
Confidence 4565556666676665 7788899999999999999321111 1 12355557899988875 34446
Q ss_pred ceeeEEEeec
Q 035678 73 TGLLTVRFKK 82 (231)
Q Consensus 73 tglltvrfkk 82 (231)
.|+|+|++.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 7999999853
No 32
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=95.99 E-value=0.026 Score=40.24 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=55.4
Q ss_pred cccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 7 eedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
.|+++.+...+-| .|-+.+.++|.++++.|.|+=+.-. ....-|---++||..++++.....+...|+|+++.
T Consensus 6 ~e~~~~~~v~~dl-PG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~l 84 (86)
T cd06475 6 RQTADRWKVSLDV-NHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEA 84 (86)
T ss_pred EEcCCeEEEEEEC-CCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEe
Confidence 3455555556554 4888999999999999999743211 12233666689999999999999999999999985
No 33
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=95.90 E-value=0.047 Score=36.01 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=54.5
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeecee
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLM 84 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklm 84 (231)
|.++++.|...+.+. |.+.+.++|-+++..+-|+= .+|.-. +.||-.++|+.-...++. |.|.+++.|.-
T Consensus 1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~------~~~~~~-~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF------PPYLFE-LDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC------CCEEEE-EeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 888999999888877 78899999999987766632 344433 489999999987777766 67899988853
No 34
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=95.85 E-value=0.013 Score=40.56 Aligned_cols=58 Identities=31% Similarity=0.457 Sum_probs=42.0
Q ss_pred cccceEEEEeeceeEEeecccccc--------------ccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 129 KKEDLVVGVVDRQFLIIGQQLNEK--------------KEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 129 kkedlvvgvvdrqfliigqqlnek--------------keggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
+++|+-|-+.++...|-|+.-... ..|.-+-+|.|| .++++....+++ -|+|+|++.|
T Consensus 22 ~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~-dGvL~I~lPK 93 (93)
T cd06471 22 KKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYE-NGVLKITLPK 93 (93)
T ss_pred CHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEE-CCEEEEEEcC
Confidence 578899988777666666553221 223335678899 799999999995 5999999965
No 35
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.35 E-value=0.075 Score=38.01 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=54.8
Q ss_pred ccCceEEEEeecCccccccceEEEEeccceeeeccc-------ccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA-------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 8 edentvlfklplasgtkqegvkvaiedhklfiseea-------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
.+++.....+-+ .|-+.+-++|-++|..|.|+=+- | ...+.|---+.||.+++|+....++...|.|+|+.
T Consensus 4 ~~~d~y~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~-~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 4 SEDDKYQVFLDV-CHFTPDEITVRTVDNLLEVSARHPQRMDRHG-FVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred ccCCeEEEEEEc-CCCCHHHeEEEEECCEEEEEEEEcceecCCC-EEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence 345555555543 47888999999999999996432 2 22334666689999999999999999999999986
Q ss_pred e
Q 035678 81 K 81 (231)
Q Consensus 81 k 81 (231)
-
T Consensus 82 P 82 (83)
T cd06476 82 P 82 (83)
T ss_pred c
Confidence 4
No 36
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=94.85 E-value=0.044 Score=33.32 Aligned_cols=58 Identities=38% Similarity=0.587 Sum_probs=44.0
Q ss_pred ccceEEEEeeceeEEeeccccc----cccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678 130 KEDLVVGVVDRQFLIIGQQLNE----KKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK 188 (231)
Q Consensus 130 kedlvvgvvdrqfliigqqlne----kkeggscesfvlphgvnpdgfetsmddpgvltvtfkk 188 (231)
++++-|-+-...+.|-++.-.. ...+.-.-.+-||+.++|+.....+++ |.|+|++.|
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l~K 80 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEITLPK 80 (80)
T ss_pred HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEEcC
Confidence 7788888888777777765422 122333557889999999998888887 999999875
No 37
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=94.83 E-value=0.21 Score=31.73 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=56.4
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeeceee
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMP 85 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklmp 85 (231)
|.+.++.|...+++.... .+.+.|.+++..+.|+=... . +.-|-.-+.|+--++|+.-.-++.. |.|.+++.|.-|
T Consensus 1 W~Q~~~~v~i~v~~~~~~-~~~~~v~~~~~~l~i~~~~~-~-~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGG-G-GKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCC-ccceEEEEecCEEEEEeeCC-C-CCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECCC
Confidence 888999999999888776 88899999998888875432 1 1223344568999999965555644 889999888654
No 38
>PRK10743 heat shock protein IbpA; Provisional
Probab=93.87 E-value=0.32 Score=37.94 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=53.5
Q ss_pred cccCceEEEEeecCccccccceEEEEeccceeeecccccc---cc-----cc---eeeeeecccccCCCcccccccccee
Q 035678 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS---LN-----QY---FGMYVNLPVGLNPDSFETSMDQTGL 75 (231)
Q Consensus 7 eedentvlfklplasgtkqegvkvaiedhklfiseeagts---ln-----qy---fgmyvnlpvglnpdsfetsmdqtgl 75 (231)
+++++.+.+.+-|+ |-+.+.++|.++|..|.|+=|.-.. -+ .+ |.--+.||.++++++ .-=+.|+
T Consensus 41 ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~---A~~~dGV 116 (137)
T PRK10743 41 LVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG---ANLVNGL 116 (137)
T ss_pred EcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc---CEEeCCE
Confidence 35677777777665 8888999999999999998442111 11 12 444578999999984 3446799
Q ss_pred eEEEeeceee
Q 035678 76 LTVRFKKLMP 85 (231)
Q Consensus 76 ltvrfkklmp 85 (231)
|+|++.|.-|
T Consensus 117 L~I~lPK~~~ 126 (137)
T PRK10743 117 LYIDLERVIP 126 (137)
T ss_pred EEEEEeCCCc
Confidence 9999988644
No 39
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=93.71 E-value=0.16 Score=36.24 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=46.4
Q ss_pred ccccccceEEEEeccceeeecccccc----cccc------eeeeeecccccCCCccccccccceeeEEEe
Q 035678 21 SGTKQEGVKVAIEDHKLFISEEAGTS----LNQY------FGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 21 sgtkqegvkvaiedhklfiseeagts----lnqy------fgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
.|-+.+-++|.+++..|-|+=+.... -.+| |---++||..+++++...++.+.|+|+|+.
T Consensus 16 pG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 16 RGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred CCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 47888999999999999996442111 0112 344478999999999999999999999985
No 40
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=93.15 E-value=0.19 Score=37.31 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=51.8
Q ss_pred EEeec-CccccccceEEEEeccceeeec-------ccccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 15 FKLPL-ASGTKQEGVKVAIEDHKLFISE-------EAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 15 fklpl-asgtkqegvkvaiedhklfise-------eagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
|++-| ++|-+.|-++|-+.+..|.|+= |.| ...+.|---+.||.++++++...++...|+|+|..
T Consensus 17 f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g-~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 17 WKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGG-IVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCC-EEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 45544 4788999999999999999952 223 33456666788999999999999999999999864
No 41
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=92.26 E-value=0.65 Score=36.75 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=53.4
Q ss_pred cccccCceEEEEeecCccccccceEEEEeccceeeecccccc------c-----ccceeeeeecccccCCCccccccccc
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS------L-----NQYFGMYVNLPVGLNPDSFETSMDQT 73 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagts------l-----nqyfgmyvnlpvglnpdsfetsmdqt 73 (231)
.||++++.+.+.+-|+ |-+.+-+.|.+++..|-|+=|.-.. + ..-|---+.||..++++ . .-=..
T Consensus 37 I~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~-A~~~n 112 (142)
T PRK11597 37 IEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--G-ATFVN 112 (142)
T ss_pred EEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--c-CEEcC
Confidence 3665566566655554 8889999999999999987553111 0 01255557899999998 3 44467
Q ss_pred eeeEEEeeceee
Q 035678 74 GLLTVRFKKLMP 85 (231)
Q Consensus 74 glltvrfkklmp 85 (231)
|+|+|++.|..|
T Consensus 113 GVL~I~lPK~~~ 124 (142)
T PRK11597 113 GLLHIDLIRNEP 124 (142)
T ss_pred CEEEEEEeccCc
Confidence 999999987643
No 42
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=92.25 E-value=1.5 Score=27.81 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=52.1
Q ss_pred cccccccCceEEEEeecCc-cccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678 3 SVFWEEDENTVLFKLPLAS-GTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK 81 (231)
Q Consensus 3 svfweedentvlfklplas-gtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk 81 (231)
...|.+.++.|...+++.. ....+-++|.+++..+-++=-.+.. ..|-.-.+|.--++|+.-.-.+... -+.+..+
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--~~~~~~~~L~~~I~~~~s~~~~~~~-~i~i~L~ 78 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--KEYLLEGELFGEIDPDESTWKVKDN-KIEITLK 78 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--CEEEEEEEBSS-BECCCEEEEEETT-EEEEEEE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--ceEEEEEEEeeeEcchhcEEEEECC-EEEEEEE
Confidence 3579999999999999944 4678899999999999888433333 3445556788888888655555544 4444443
No 43
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=90.36 E-value=1.4 Score=29.09 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=54.4
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeeceee
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMP 85 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklmp 85 (231)
|.++++.|...+++. |...+.++|.++...+.|+=..+ -+.-|-..+.|+--++|+.-.... ..|.+.++++|.-+
T Consensus 2 W~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~--~~~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 2 WYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILP--GGSEYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred ccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECC--CCCeEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence 888888888888865 78788999999999998875543 111234556788888888443333 34668888888544
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=90.16 E-value=1 Score=32.88 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=49.2
Q ss_pred eEEEEeecCccccccceEEEEeccceeeeccccccc------cccee---eeeecccccCCCccccccccceeeEEE
Q 035678 12 TVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSL------NQYFG---MYVNLPVGLNPDSFETSMDQTGLLTVR 79 (231)
Q Consensus 12 tvlfklplasgtkqegvkvaiedhklfiseeagtsl------nqyfg---myvnlpvglnpdsfetsmdqtglltvr 79 (231)
.+.+.+-|. |-+.+.++|.++|..|-|+=|.-..- ..++| --+.||.+++++....++...|.|++.
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 334444333 78889999999999999985432211 12333 457999999999999999999999874
No 45
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=2 Score=32.57 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=55.2
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccc----------cccceeee---eecccccCCCcccccccc
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS----------LNQYFGMY---VNLPVGLNPDSFETSMDQ 72 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts----------lnqyfgmy---vnlpvglnpdsfetsmdq 72 (231)
+.|.++.+...+-|+ |-+.+-++|.+++..|.|+=|.... -..++|-| +.||..++|+.-..+. .
T Consensus 45 i~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~ 122 (146)
T COG0071 45 IEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-K 122 (146)
T ss_pred EEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-e
Confidence 344444555555543 7779999999999999998655331 11123444 7899999999754444 5
Q ss_pred ceeeEEEeeceeec
Q 035678 73 TGLLTVRFKKLMPI 86 (231)
Q Consensus 73 tglltvrfkklmpi 86 (231)
.|+|+|++.|.-|-
T Consensus 123 nGvL~I~lpk~~~~ 136 (146)
T COG0071 123 NGLLTVTLPKAEPE 136 (146)
T ss_pred CcEEEEEEeccccc
Confidence 79999999998774
No 46
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=88.11 E-value=2.4 Score=28.22 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=54.1
Q ss_pred cccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeecee
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLM 84 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklm 84 (231)
.|.+.++.|...+++..+...+-++|.+++..+-|+=.. +.++ ..-.|.-.++|+.=--+++....+.++++|--
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----~~~~-l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----GEPL-LDGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----CCce-EcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 599999999999999999999999999999888887432 1221 22357777788754345555345777777754
Q ss_pred e
Q 035678 85 P 85 (231)
Q Consensus 85 p 85 (231)
|
T Consensus 77 ~ 77 (85)
T cd06467 77 E 77 (85)
T ss_pred C
Confidence 3
No 47
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=86.61 E-value=2.8 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=41.9
Q ss_pred ccceEEEEeeceeEEeeccccccccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678 130 KEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS 191 (231)
Q Consensus 130 kedlvvgvvdrqfliigqqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkps 191 (231)
++|+-|-+-++.+-|-.+.- ..+.-.-.+-|+|-|+|+.-.-++.+ |.|.|++.|+..
T Consensus 19 ~~~~~v~~~~~~l~i~~~~~---~~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~ 76 (84)
T cd06463 19 KKDVKVEFTPKSLTVSVKGG---GGKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKEP 76 (84)
T ss_pred ccceEEEEecCEEEEEeeCC---CCCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECCC
Confidence 67787877776666655422 11223566779999999987777755 999999998765
No 48
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=84.45 E-value=3.7 Score=26.88 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=37.6
Q ss_pred ccccceEEEEeeceeEEeeccccccccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCC
Q 035678 128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKP 190 (231)
Q Consensus 128 tkkedlvvgvvdrqfliigqqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkp 190 (231)
.+++|+-|=+-++.+.|-+.+ -=-.+-|||.|+|+.-...+++ |.|.|++.|..
T Consensus 17 v~~~~v~v~~~~~~l~i~~~~--------~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 17 VKTSKVDIFCSDLYLKVNFPP--------YLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CccccceEEEecCEEEEcCCC--------EEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 356777777766666554411 1123469999999987777754 89999999864
No 49
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=80.63 E-value=10 Score=26.12 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=50.9
Q ss_pred cccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL 83 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl 83 (231)
-|....+.|...+|+..+++.+.++|.++...+.++=-.+ +.+ +.-+|.-.++||.---.+.....|.+.+.|.
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~----~~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ----APL-LEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC----CeE-EeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 3888888899999998999999999999999888852111 122 3336777888876543332223466776664
No 50
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=6.5 Score=31.93 Aligned_cols=86 Identities=35% Similarity=0.530 Sum_probs=60.5
Q ss_pred ccc--cccCceEEEEeecCccccccceEEEEeccc-eeeecc---------c-------ccccccceeeeeecccccCCC
Q 035678 4 VFW--EEDENTVLFKLPLASGTKQEGVKVAIEDHK-LFISEE---------A-------GTSLNQYFGMYVNLPVGLNPD 64 (231)
Q Consensus 4 vfw--eedentvlfklplasgtkqegvkvaiedhk-lfisee---------a-------gtslnqyfgmyvnlpvglnpd 64 (231)
+-| .|-+++..|++-+.... .+-+||.+++-+ |.||=| . ..+++ +|.+++-||.-..-|
T Consensus 85 ~~~~v~e~~~~~~~~~~~Pgl~-ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g-~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 85 VPWDVKESPDAHEFKVDLPGLK-KEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLG-KFKRRFELPENVDVD 162 (196)
T ss_pred CCcccccCCCceEEEeeCCCCC-chhceEEeccCcEEEEecccccccccccCCccceeehhccc-ceEeeecCCccccHH
Confidence 346 45566666665554433 778999999996 887621 1 33444 899999999988777
Q ss_pred ccccccccceeeEEEeeceeec--cccccc
Q 035678 65 SFETSMDQTGLLTVRFKKLMPI--NSKLSC 92 (231)
Q Consensus 65 sfetsmdqtglltvrfkklmpi--nsklsc 92 (231)
.....| ..|.|+|-..|+-|. .++..|
T Consensus 163 ~ikA~~-~nGVL~VvvpK~~~~~~~~~v~~ 191 (196)
T KOG0710|consen 163 EIKAEM-ENGVLTVVVPKLEPLLKKPKVRQ 191 (196)
T ss_pred HHHHHh-hCCeEEEEEecccccccCCccce
Confidence 766666 479999999999885 444443
No 51
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=77.47 E-value=10 Score=27.84 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=55.5
Q ss_pred cccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678 5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL 83 (231)
Q Consensus 5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl 83 (231)
-|....+.|.+.+|+..|++..-++|.|+..+|-+.= .|.. + +.-+|+--++||.=--+++...+|.+...|.
T Consensus 9 ~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~-~g~~---~--l~G~L~~~I~~destWtled~k~l~I~L~K~ 81 (93)
T cd06494 9 CWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV-KGQE---V--LKGKLFDSVVADECTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred EEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE-CCEE---E--EcCcccCccCcccCEEEEECCcEEEEEEEeC
Confidence 5889999999999999999999999999999988763 1211 1 1126777788876555577666778888775
No 52
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=73.75 E-value=6.2 Score=32.16 Aligned_cols=62 Identities=27% Similarity=0.439 Sum_probs=46.1
Q ss_pred cccccceEEEEeccceeee-------cccccccccceeeeeecccccCCCccccccccceeeEEEeecee
Q 035678 22 GTKQEGVKVAIEDHKLFIS-------EEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLM 84 (231)
Q Consensus 22 gtkqegvkvaiedhklfis-------eeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklm 84 (231)
.-+-|-++|-..|+.|-|. +|-|+.-.+|--.| .||-|.+|++...++...|.|||+-.+.-
T Consensus 82 ~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y-~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 82 QFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKY-LLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred cCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEe-cCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 3455677888888877775 23355444444444 69999999999999999999999976543
No 53
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=73.23 E-value=24 Score=25.13 Aligned_cols=76 Identities=13% Similarity=0.318 Sum_probs=54.3
Q ss_pred ccccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678 4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL 83 (231)
Q Consensus 4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl 83 (231)
+-|-...++|.+.+++... +.+.|.++...+-|+=..+..-.. |-+-+.|.--+.|++-.-.+.. +-+.++++|-
T Consensus 3 ~~W~Qt~~~V~i~i~~~~~---~~~~V~~~~~~l~v~~~~~~~~~~-y~~~~~L~~~I~pe~s~~~v~~-~kveI~L~K~ 77 (108)
T cd06465 3 VLWAQRSDVVYLTIELPDA---KDPKIKLEPTSLSFKAKGGGGGKK-YEFDLEFYKEIDPEESKYKVTG-RQIEFVLRKK 77 (108)
T ss_pred eeeeECCCEEEEEEEeCCC---CCcEEEEECCEEEEEEEcCCCCee-EEEEeEhhhhccccccEEEecC-CeEEEEEEEC
Confidence 5699999999999988765 778999999999887532221122 2344478888899855555555 6688888886
Q ss_pred e
Q 035678 84 M 84 (231)
Q Consensus 84 m 84 (231)
-
T Consensus 78 ~ 78 (108)
T cd06465 78 E 78 (108)
T ss_pred C
Confidence 5
No 54
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=63.39 E-value=40 Score=22.75 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=49.4
Q ss_pred ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCC-ccccccccceeeEEEeece
Q 035678 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPD-SFETSMDQTGLLTVRFKKL 83 (231)
Q Consensus 6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpd-sfetsmdqtglltvrfkkl 83 (231)
|....+.|...+. +.+...+.++|.+++..+-++=... +-+. |-+.+.|.--++|+ |.-+-. .+ -+.++++|.
T Consensus 2 W~Q~~~~V~iti~-~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~-y~~~~~L~~~I~p~~s~~~v~-~~-kiei~L~K~ 75 (84)
T cd06489 2 WYQTESQVVITIL-IKNVKPEDVSVEFEKRELSATVKLP-SGND-YSLKLHLLHPIVPEQSSYKIL-ST-KIEIKLKKT 75 (84)
T ss_pred ccccCCEEEEEEE-ECCCCHHHCEEEEeCCEEEEEEECC-CCCc-EEEeeecCceecchhcEEEEe-Cc-EEEEEEEcC
Confidence 7788888888887 4578889999999999987764332 1122 45666777778888 333333 22 366777764
No 55
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=34.61 E-value=1.4e+02 Score=19.70 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=36.7
Q ss_pred cccccceEEEEeeceeEEeeccccccccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCC
Q 035678 127 ETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKP 190 (231)
Q Consensus 127 etkkedlvvgvvdrqfliigqqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkp 190 (231)
.+.++|+-|-+-++.+.|-.+. + ...-.--|.|.|+|+.-.-++++-..+.|+++|+.
T Consensus 19 ~~~~~dv~v~~~~~~l~v~~~~-~-----~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 19 GTKSKDVKVEITPKHLKVGVKG-G-----EPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CCcceeEEEEEEcCEEEEEECC-C-----CceEcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 3446777777766555443321 1 11112258999999976667777467889998864
No 56
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=1.2e+02 Score=24.61 Aligned_cols=61 Identities=39% Similarity=0.578 Sum_probs=46.8
Q ss_pred ccceEEEEeec-eeEEeeccccccccCCc--------------eeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678 130 KEDLVVGVVDR-QFLIIGQQLNEKKEGGS--------------CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS 191 (231)
Q Consensus 130 kedlvvgvvdr-qfliigqqlnekkeggs--------------cesfvlphgvnpdgfetsmddpgvltvtfkkkps 191 (231)
++|+=|=+-|- ...|-|+.-+|..+.++ =-.|.||--++-|...-.|.| |||+|+..|-+.
T Consensus 107 ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n-GVL~VvvpK~~~ 182 (196)
T KOG0710|consen 107 KEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN-GVLTVVVPKLEP 182 (196)
T ss_pred chhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC-CeEEEEEecccc
Confidence 67777777777 57888988887776433 235789999988888777765 899999988765
No 57
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=31.94 E-value=5.2 Score=29.59 Aligned_cols=20 Identities=50% Similarity=1.079 Sum_probs=15.4
Q ss_pred eeeeeeccccc-----CCCcccccc
Q 035678 51 FGMYVNLPVGL-----NPDSFETSM 70 (231)
Q Consensus 51 fgmyvnlpvgl-----npdsfetsm 70 (231)
|||||-.|||+ +|+-|+.-+
T Consensus 11 fg~Yv~fPI~~~~~fN~pe~f~~~v 35 (80)
T PF09803_consen 11 FGMYVFFPIGMFYYFNQPEWFEKWV 35 (80)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHh
Confidence 89999999986 577776543
No 58
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=30.58 E-value=89 Score=23.43 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=48.3
Q ss_pred ccccccCceEEEEeecCcc-ccccceEEEEeccceeeeccc--ccccccceeeeeecccccCC-CccccccccceeeEEE
Q 035678 4 VFWEEDENTVLFKLPLASG-TKQEGVKVAIEDHKLFISEEA--GTSLNQYFGMYVNLPVGLNP-DSFETSMDQTGLLTVR 79 (231)
Q Consensus 4 vfweedentvlfklplasg-tkqegvkvaiedhklfiseea--gtslnqyfgmyvnlpvglnp-dsfetsmdqtglltvr 79 (231)
.-|....+.|...+|+.+| ++..-++|.|.-..|-+.=.. |.. .+ +-=.|+--.++ +|+=| ++..-+|.+-
T Consensus 7 Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~--~~--i~G~L~~~V~~des~Wt-led~~~l~I~ 81 (102)
T cd06495 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK--VL--MEGEFTHKINTENSLWS-LEPGKCVLLS 81 (102)
T ss_pred eEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc--eE--EeCcccCcccCccceEE-EeCCCEEEEE
Confidence 4588888889999999998 567789999998887765432 210 11 12257777777 45555 4443345555
Q ss_pred eece
Q 035678 80 FKKL 83 (231)
Q Consensus 80 fkkl 83 (231)
.-|.
T Consensus 82 L~K~ 85 (102)
T cd06495 82 LSKC 85 (102)
T ss_pred EEEC
Confidence 5553
No 59
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=27.42 E-value=2e+02 Score=19.40 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=49.3
Q ss_pred cccccccCceEEEEeecCcccc--ccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678 3 SVFWEEDENTVLFKLPLASGTK--QEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF 80 (231)
Q Consensus 3 svfweedentvlfklplasgtk--qegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf 80 (231)
+.-|...++.|...+++..... ++-+.|.++...+.++=-.... ..|--..-+|---++|+.-...+..+. +.++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~-~~~~~~~~~L~~~I~~e~s~~~~~~~k-i~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNG-KNYRFTINRLLKKIDPEKSSFKVKTDR-IVITL 80 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCC-cEEEEEehHhhCccCccccEEEEeCCE-EEEEE
Confidence 3469899999888887765543 5789999998888775321111 122112224667788886555555544 55666
Q ss_pred ecee
Q 035678 81 KKLM 84 (231)
Q Consensus 81 kklm 84 (231)
+|.-
T Consensus 81 ~K~~ 84 (92)
T cd06468 81 AKKK 84 (92)
T ss_pred EeCC
Confidence 5543
No 60
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=26.78 E-value=16 Score=33.75 Aligned_cols=17 Identities=41% Similarity=0.958 Sum_probs=14.8
Q ss_pred ccccceeeeeecccccC
Q 035678 46 SLNQYFGMYVNLPVGLN 62 (231)
Q Consensus 46 slnqyfgmyvnlpvgln 62 (231)
--|..|||+.|||+|+.
T Consensus 103 l~NR~~g~fANLPigvP 119 (324)
T KOG2987|consen 103 LYNRIFGFFANLPIGVP 119 (324)
T ss_pred HHHHHHHHhhcCcccCc
Confidence 35899999999999984
No 61
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=26.77 E-value=1.3e+02 Score=21.40 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=44.4
Q ss_pred cccccCceEEEEeecCcc--ccccceEEEEeccceeeecccccccccceeeeeecccccCCC-ccccccccceeeEEEee
Q 035678 5 FWEEDENTVLFKLPLASG--TKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPD-SFETSMDQTGLLTVRFK 81 (231)
Q Consensus 5 fweedentvlfklplasg--tkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpd-sfetsmdqtglltvrfk 81 (231)
-|....+.|...+|+..+ ++..-++|.|+-..|-++=... .++ +--.|.--.+|| |+=| ++....|.+-..
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~----~~~-i~G~L~~~V~~des~Wt-led~~~l~i~L~ 75 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ----PPI-IDGELYNEVKVEESSWL-IEDGKVVTVNLE 75 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC----ceE-EeCcccCcccccccEEE-EeCCCEEEEEEE
Confidence 377777778877777665 8888899999877776643211 111 223566667774 4444 443335555555
Q ss_pred ce
Q 035678 82 KL 83 (231)
Q Consensus 82 kl 83 (231)
|.
T Consensus 76 K~ 77 (87)
T cd06492 76 KI 77 (87)
T ss_pred EC
Confidence 53
No 62
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.15 E-value=1.1e+02 Score=29.66 Aligned_cols=59 Identities=29% Similarity=0.409 Sum_probs=45.9
Q ss_pred cccccceEEEEeece---eEEeeccccccccCCceeeeeecCCCCCC-------CcccccCCCceEEEE
Q 035678 127 ETKKEDLVVGVVDRQ---FLIIGQQLNEKKEGGSCESFVLPHGVNPD-------GFETSMDDPGVLTVT 185 (231)
Q Consensus 127 etkkedlvvgvvdrq---fliigqqlnekkeggscesfvlphgvnpd-------gfetsmddpgvltvt 185 (231)
|.+..|.-|+||++. ..+-|-.++--..+-+=|-||+|-+..-. +|--.||.|||--+.
T Consensus 164 e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~d~dfAv~FaiP~dt~GvK~i~ 232 (493)
T COG2368 164 EQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQEDDKDFAVAFAIPMDTEGVKFIC 232 (493)
T ss_pred hccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCCCCceEEEEEcccCCCceEEEe
Confidence 444558999999874 67778888887777888999999987644 488899999986543
No 63
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=24.40 E-value=1e+02 Score=25.52 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=33.0
Q ss_pred eeccccccccCCceeeeeecCCCCCCCccccc-CCCceEEEEeecCCC
Q 035678 145 IGQQLNEKKEGGSCESFVLPHGVNPDGFETSM-DDPGVLTVTFKKKPS 191 (231)
Q Consensus 145 igqqlnekkeggscesfvlphgvnpdgfetsm-ddpgvltvtfkkkps 191 (231)
-|.+|.-.-.+.+|.+++.|-|| |.|..|.. ....-|++|+=-.+.
T Consensus 101 ~G~~v~v~ps~~~Cp~I~Wp~Gv-P~G~~~~~C~~~~dl~LtLC~~~~ 147 (155)
T PF04681_consen 101 AGHKVTVNPSDPSCPSIVWPNGV-PAGSQVKNCGSSTDLVLTLCAPET 147 (155)
T ss_pred CCCEEEEecCCCCCCceECCCCc-CCCcceeecCCCccEEEEeCCCCC
Confidence 45566666788999999999999 78887754 334567777654443
No 64
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=23.66 E-value=26 Score=28.87 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=0.0
Q ss_pred cccceeeEEEeeceeecccccccccccccc
Q 035678 70 MDQTGLLTVRFKKLMPINSKLSCSTVKSSC 99 (231)
Q Consensus 70 mdqtglltvrfkklmpinsklscstvkssc 99 (231)
||..|||..+|--+......+||.|..+.-
T Consensus 1 MDpkgllsl~~lLflsLafelS~gtg~~~m 30 (126)
T PF06214_consen 1 MDPKGLLSLNFLLFLSLAFELSCGTGEGMM 30 (126)
T ss_dssp ------------------------------
T ss_pred CCccchhhhHHHHHHHHHhhhccccCCCcc
Confidence 899999999999999999999999988753
No 65
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=23.21 E-value=38 Score=31.50 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=21.1
Q ss_pred EeeccccccccCC-------ceeeeeecCCCCCCCcccccC
Q 035678 144 IIGQQLNEKKEGG-------SCESFVLPHGVNPDGFETSMD 177 (231)
Q Consensus 144 iigqqlnekkegg-------scesfvlphgvnpdgfetsmd 177 (231)
+|-|-+++-.+.+ .=.-+++|+ +||||||-|-.
T Consensus 192 ~i~qLv~~y~~~~~~~~ll~~~dwyI~Pv-~NPDGYeYS~t 231 (418)
T KOG2650|consen 192 FINQLVSSYGRDPAVTKLLDKLDWYILPV-VNPDGYEYSRT 231 (418)
T ss_pred HHHHHHhhhccCHHHHHHHhcCcEEEEee-ecCCcceeeec
Confidence 4555555543333 345578887 89999997644
No 66
>PF11681 DUF3277: Protein of unknown function (DUF3277); InterPro: IPR021695 This entry is represented by Bacteriophage rv5, Orf52. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins represents a putative bacteriophage protein. No function is currently known.
Probab=22.33 E-value=42 Score=27.34 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.9
Q ss_pred ccccccceeeEEEeeceeeccccccc
Q 035678 67 ETSMDQTGLLTVRFKKLMPINSKLSC 92 (231)
Q Consensus 67 etsmdqtglltvrfkklmpinsklsc 92 (231)
.-+-|+.|-+|||+.+--|.|.+|+=
T Consensus 55 sl~adksGtVTV~LlqTSp~N~~Ls~ 80 (146)
T PF11681_consen 55 SLNADKSGTVTVNLLQTSPSNAKLSA 80 (146)
T ss_pred EEcCCCCeEEEEEehhcCchHHHHHH
Confidence 34568999999999999999999983
No 67
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=21.70 E-value=97 Score=24.54 Aligned_cols=47 Identities=38% Similarity=0.474 Sum_probs=29.4
Q ss_pred eeeeecCCCCCCCcccccCCCceEEEEeecCCCCch--hhHHHHHHHHhhhhchHHH
Q 035678 159 ESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDG--KKKKEKILKSRLLGGLAEA 213 (231)
Q Consensus 159 esfvlphgvnpdgfetsmddpgvltvtfkkkpskdg--kkkkekilksrllgglaea 213 (231)
..|..|||+.|-=- .|..=.|+|+++++- -...|+.++. ||.+.++|
T Consensus 106 ~~~~~~hGLTPP~~-------~vrkRrfrk~~~~~~~~i~~vEkev~~-ll~~d~~a 154 (162)
T cd08047 106 KKFEYPHGLTPPMK-------NVRKRRFRKTPSKKIAEIEEVEKEVKR-LLKEDTEA 154 (162)
T ss_pred cccccCCCCCcCch-------hhhhcccccccccccchHHHHHHHHHH-HHHhhhhh
Confidence 35889999988422 233346777777776 4566676664 55555444
No 68
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=20.93 E-value=1.3e+02 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=32.0
Q ss_pred ceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeeccccc
Q 035678 11 NTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGL 61 (231)
Q Consensus 11 ntvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvgl 61 (231)
.++.+.+ ..+....-..+.|++|++.+-+--|..+..+----+.|++|-
T Consensus 68 ~~~rlRl--iNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~ 116 (159)
T PF00394_consen 68 ERYRLRL--INAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQ 116 (159)
T ss_dssp TEEEEEE--EEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTE
T ss_pred cEEEEEE--EeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCe
Confidence 3444444 455556688999999999999988877775554444555443
No 69
>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity
Probab=20.74 E-value=56 Score=22.48 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=19.0
Q ss_pred cCcee-ecccCCCccccccceEEEE
Q 035678 114 ANGVI-HSKAGLSAETKKEDLVVGV 137 (231)
Q Consensus 114 angvi-hskaglsaetkkedlvvgv 137 (231)
-|||+ -||.-+|.|.|-|+|-+-.
T Consensus 15 mN~~v~sskr~~s~Enk~eeLELPL 39 (42)
T PF12398_consen 15 MNGMVLSSKRQLSGENKTEELELPL 39 (42)
T ss_pred ccceEEeccccccccCccceecccc
Confidence 56765 7999999999999986543
No 70
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=20.67 E-value=26 Score=23.52 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.4
Q ss_pred eecccccccccce
Q 035678 39 ISEEAGTSLNQYF 51 (231)
Q Consensus 39 iseeagtslnqyf 51 (231)
..++.|.|||||.
T Consensus 35 ~A~~~gvSlN~~I 47 (51)
T PF05534_consen 35 AAAAEGVSLNQWI 47 (51)
T ss_pred HHHHhCCCHHHHH
Confidence 4577899999984
No 71
>PHA03357 Alkaline exonuclease; Provisional
Probab=20.45 E-value=59 Score=25.25 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.7
Q ss_pred eeeeeecCCCCCCCcccccCCCceEEEEeecCCCCch
Q 035678 158 CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDG 194 (231)
Q Consensus 158 cesfvlphgvnpdgfetsmddpgvltvtfkkkpskdg 194 (231)
-|.|-|---+|.+|-......|.++.++-|||||+..
T Consensus 37 FEdF~lDE~~~e~~~~~~~~~~~~~~~~~k~k~s~k~ 73 (81)
T PHA03357 37 FEDFDFDENTNEAADKPDFPKPNFIDPKNKKKLSGKS 73 (81)
T ss_pred hhccccccccCccccCcCCCCCcccCCCcccCCCCcc
Confidence 4677787777777777777788999999999998753
Done!