RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 035678
(231 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 48.7 bits (117), Expect = 8e-08
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCES----------FVLPHGVNPDGFETSMDD 178
K E+L V V D + L+ G+ E+++ S FVLP +PD + S+ D
Sbjct: 19 KPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASLKD 78
Query: 179 PGVLTVTFKKKPSKDGKKKK 198
GVLTVT K + K ++
Sbjct: 79 -GVLTVTVPKLEPPEKKPRR 97
Score = 26.8 bits (60), Expect = 3.9
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFI-----SEEAGT------SLNQYFGMY 54
+ED++ + KL + G K E +KV +ED+++ + EE + F
Sbjct: 2 IKEDKDAFVVKLDV-PGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 55 VNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSK 89
LP +PD + S+ G+LTV KL P K
Sbjct: 61 FVLPENADPDKVKASLKD-GVLTVTVPKLEPPEKK 94
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 42.5 bits (101), Expect = 8e-06
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----------SFVLPHGVNPDGFETSMD 177
KKED+ V V D I G++ E++E + SF LP V+PD + S++
Sbjct: 19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78
Query: 178 DPGVLTVTFKK 188
+ GVLT+T K
Sbjct: 79 N-GVLTITLPK 88
Score = 34.8 bits (81), Expect = 0.005
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS---------EEAGTSLNQYFGMY-- 54
E ++ + + L G K+E +KV +ED L IS EE + +G +
Sbjct: 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSR 60
Query: 55 -VNLPVGLNPDSFETSMDQTGLLTVRFKK 82
LP ++PD + S++ G+LT+ K
Sbjct: 61 SFRLPEDVDPDKIKASLEN-GVLTITLPK 88
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 41.7 bits (99), Expect = 1e-05
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLT 183
K E+L V V D + ++ G+ + E G + LP GV+PD +S+ GVLT
Sbjct: 19 KPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLT 78
Query: 184 VT 185
+
Sbjct: 79 IE 80
Score = 26.3 bits (59), Expect = 5.3
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 24 KQEGVKVAIEDHKLFIS-------EEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLL 76
K E +KV + D+KL + +E G ++ Y LP G++PDS +S+ G+L
Sbjct: 19 KPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQ-LPEGVDPDSVTSSLSSDGVL 77
Query: 77 TVR 79
T+
Sbjct: 78 TIE 80
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 40.3 bits (95), Expect = 5e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFV----LPHGVNPDGFETSMDDPGVLTV 184
KKED+ V V D I G++ E++ S F LP V+P+ + S+++ GVL +
Sbjct: 18 KKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEI 76
Query: 185 TFKK 188
T K
Sbjct: 77 TLPK 80
Score = 36.0 bits (84), Expect = 0.002
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS--EEAGTSLNQYFGMY---VNLPVG 60
W + ++ V+ + L G K+E +KV +ED+ L IS E + +G + LP
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 61 LNPDSFETSMDQTGLLTVRFKK 82
++P+ + S++ G+L + K
Sbjct: 60 VDPEKSKASLE-NGVLEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 40.1 bits (94), Expect = 2e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSC------------ESFVLPHGVNPDGFETSM 176
KED+ + V I G++ E++E +F LP V+P+ +
Sbjct: 62 DKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY 121
Query: 177 DDPGVLTVTFKKKPSKDGKKKKEKI 201
+ G+LTVT K ++ K K+ +I
Sbjct: 122 KN-GLLTVTLPKAEPEEKKPKRIEI 145
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 36.5 bits (85), Expect = 0.001
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 129 KKEDLVVGVVDRQFLII-GQQLNEKKEGG--------SCESFV----LPHGVNPDGFETS 175
KKED+ V V D + L I G++ E+++ G S FV LP + D +
Sbjct: 21 KKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80
Query: 176 MDDPGVLTVTFKK 188
+++ GVLTVT K
Sbjct: 81 LEN-GVLTVTVPK 92
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 27.9 bits (62), Expect = 1.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 131 EDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTV 184
E+LVV D I G+ ++ E G + LP GV+P +S+ G+LTV
Sbjct: 24 EELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82
>gnl|CDD|143650 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the Rel homology
domain (RHD) of nuclear factor kappa B2 (NF-kappa B2).
Proteins containing the Rel homology domain (RHD) are
metazoan transcription factors. The RHD is composed of
two structural sub-domains; this model characterizes the
N-terminal RHD sub-domain of the NF-kappa B2 family of
transcription factors, a class I member of the NF-kappa
B family. In class I NF-kappa Bs, the RHD domain
co-occurs with C-terminal ankyrin repeats. NF-kappa B2
is commonly referred to as p100 or p52 (proteolytically
processed form). NF-kappa B proteins are part of a
protein complex that acts as a transcription factor,
which is responsible for regulating a host of cellular
responses to a variety of stimuli. This complex tightly
regulates the expression of a large number of genes, and
is involved in processes such as adaptive and innate
immunity, stress response, inflammation, cell adhesion,
proliferation and apoptosis. The cytosolic NF-kappa B
complex is activated via phosphorylation of the
ankyrin-repeat containing inhibitory protein I-kappa B,
which dissociates from the complex and exposes the
nuclear localization signal of the heterodimer (NF-kappa
B and REL). NF-kappa B2 is involved in the alternative
NF-kappa B signaling pathway which is activated by few
agonists and plays an important role in secondary
lymphoid organogenesis, maturation of B-cells, and
adaptive humoral immunity. p100 may also act as an
I-kappa B due to its C-terminal ankyrin repeats.
Length = 185
Score = 27.6 bits (61), Expect = 4.0
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 144 IIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKEKILK 203
++G+ NE G+C V P + G+L VT K +K K + L+
Sbjct: 72 LVGKHCNES---GNCSV-----DVGPKDMTAQFSNLGILHVTKKNMMEILKEKLKRQKLR 123
Query: 204 SRLLGGLAEA 213
+ L EA
Sbjct: 124 NTGPYKLTEA 133
>gnl|CDD|152117 pfam11681, DUF3277, Protein of unknown function (DUF3277). This
family of proteins represents a putative bacteriophage
protein. No function is currently known.
Length = 146
Score = 26.4 bits (58), Expect = 8.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 71 DQTGLLTVRFKKLMPINSKLS 91
D++G +T+R K P+N+KL
Sbjct: 59 DKSGQITIRLLKTSPVNAKLM 79
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and
conversion].
Length = 509
Score = 26.9 bits (60), Expect = 9.9
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 176 MDDPGVLTVTFKKKPSKDGKKKKEK---------ILKSRLLGGLAEACLLAG 218
+ DP KKK KKKK K IL+S+ LG +A L G
Sbjct: 249 LTDPLFYLRAKKKK-----KKKKLKLGLIESFKMILRSKYLGAIALLVLAYG 295
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.389
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,544,407
Number of extensions: 1055779
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 23
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.0 bits)