RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 035678
(231 letters)
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 69.5 bits (169), Expect = 4e-14
Identities = 26/212 (12%), Positives = 62/212 (29%), Gaps = 29/212 (13%)
Query: 1 MHSVFWEEDENTVLFKLPL-ASGTKQEGVKVAIEDHKLFIS------EEAGTSLNQYFGM 53
+ + + + FK+ K E + + + +KL +
Sbjct: 100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRS 159
Query: 54 YVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEP---- 109
LP ++ + + ++ +L + P + S K
Sbjct: 160 IP-LPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVK 218
Query: 110 --------DDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-- 159
++ + IH + + +D+ V + + G E+K +
Sbjct: 219 NKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSE 278
Query: 160 ------SFVLPHGVNPDGFETSMDDPGVLTVT 185
+FV P V+ + + D G++ V
Sbjct: 279 HREFYKAFVTPEVVDASKTQAEIVD-GLMVVE 309
Score = 49.8 bits (118), Expect = 2e-07
Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 23/148 (15%)
Query: 52 GMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDD 111
++ P ++FE+ M + + P + G L+
Sbjct: 56 NLFSLEPFTAMDNAFESVMKE-------MSAIQP-------REFHPELEYTQPGELDFLK 101
Query: 112 KEANGVIHSKAGLSAE-----TKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFV---- 162
+ K E++ + + ++ Q+ + ES
Sbjct: 102 DAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIP 161
Query: 163 LPHGVNPDGFETSMDDPGVLTVTFKKKP 190
LP V+ + + ++ VL +
Sbjct: 162 LPPSVDRNHIQATITTDDVLVIEAPVNE 189
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 52.9 bits (127), Expect = 1e-09
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
EDL V V + I G+ + + G + LP V+ S+ G+LT
Sbjct: 24 SPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLT 83
Query: 184 VTFKKKPSKDGKKKKEKI 201
+ K PS E+
Sbjct: 84 FSGPKIPSGVDAGHSERA 101
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS------EEAGTSLNQYFGMYVNLPVG 60
D + + L + E + V +++ + I ++ +++ F LP
Sbjct: 8 RSDRDKFVIFLDV-KHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSN 66
Query: 61 LNPDSFETSMDQTGLLTVRFKKLMP 85
++ + S+ G+LT K+
Sbjct: 67 VDQSALSCSLSADGMLTFSGPKIPS 91
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 52.1 bits (125), Expect = 3e-09
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
E++ V VV + + E G + LP GV+P +++ GVL+
Sbjct: 23 SPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLS 82
Query: 184 VTFKKKPSKDGKKKKEKI 201
+ ++
Sbjct: 83 IQATPASAQASLPSPPAA 100
Score = 34.0 bits (78), Expect = 0.008
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS-------EEAGTSLNQYFGMYVNLPV 59
D L + E + V + + + +E G ++ Y LP
Sbjct: 7 PTDPGYFSVLLDV-KHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYR-LPP 64
Query: 60 GLNPDSFETSMDQTGLLTVRFKKLMP 85
G++P + +++ G+L+++
Sbjct: 65 GVDPAAVTSALSPEGVLSIQATPASA 90
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 51.9 bits (125), Expect = 8e-09
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 129 KKEDLVVGVVDRQFLII---GQQLNEKKEG---------GSCE-SFVLPHGVNPDGFETS 175
KKE++ V V D L++ + E K G F L + +
Sbjct: 65 KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG 124
Query: 176 MDDPGVLTVTFKKKPSKDGKKKKEKI 201
+++ GVLTVT K K + K +I
Sbjct: 125 LEN-GVLTVTVPKAEVKKPEVKAIQI 149
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 51.1 bits (122), Expect = 2e-08
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
E+L V V+ + G+ + E G + +P V+P +S+ GVLT
Sbjct: 85 SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLT 144
Query: 184 VTFKKKPSKDGKKK 197
V +K ++
Sbjct: 145 VNGPRKQVSGPERT 158
Score = 37.6 bits (87), Expect = 0.001
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS-------EEAGTSLNQYFGMYVNLPV 59
+++ L + E +KV + + + +E G ++ Y +P
Sbjct: 69 RLEKDRFSVNLDV-KHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR-IPA 126
Query: 60 GLNPDSFETSMDQTGLLTVRFKKLMP 85
++P + +S+ G+LTV +
Sbjct: 127 DVDPLTITSSLSSDGVLTVNGPRKQV 152
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
E+L V V+ + G+ + E G + +P V+P +SM GVLT
Sbjct: 18 SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLT 77
Query: 184 VTFKKKPSKDGKK 196
V +K ++
Sbjct: 78 VNGPRKQVSGPER 90
Score = 34.3 bits (79), Expect = 0.005
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS------EEAGTSLNQYFGMYVNLPVG 60
+++ L + E +KV + + + ++ +++ F +P
Sbjct: 2 AMEKDRFSVNLDV-KHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 61 LNPDSFETSMDQTGLLTVRFKKLMP 85
++P + +SM G+LTV +
Sbjct: 61 VDPLTITSSMSSDGVLTVNGPRKQV 85
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 46.2 bits (110), Expect = 3e-07
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
++L V D I G+ + E G + LP GV+P +S+ G LT
Sbjct: 19 APDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLT 78
Query: 184 VTFKKK 189
V
Sbjct: 79 VEAPMP 84
Score = 32.3 bits (74), Expect = 0.023
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 15 FKLPLA-SGTKQEGVKVAIEDHKLFIS-------EEAGTSLNQYFGMYVNLPVGLNPDSF 66
+++ L + + + V +D + I+ +E G + Y LP G++P
Sbjct: 9 WRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYT-LPPGVDPTQV 67
Query: 67 ETSMDQTGLLTVR 79
+S+ G LTV
Sbjct: 68 SSSLSPEGTLTVE 80
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEG------------GSCE-SFVLPHGVNPDGFETS 175
KED+++ V I ++ + LP V +
Sbjct: 78 NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK 137
Query: 176 MDDPGVLTVTFKKKPSKDGKKKK 198
++ GVL+V K S K
Sbjct: 138 FEN-GVLSVILPKAESSIKKGIN 159
Score = 33.9 bits (78), Expect = 0.019
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 16/91 (17%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS---------EEAGTSLNQ--YFGMY 54
E + + L G +E + + L I E ++
Sbjct: 61 IIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI 119
Query: 55 ---VNLPVGLNPDSFETSMDQTGLLTVRFKK 82
+ LP + ++ + G+L+V K
Sbjct: 120 YRTIKLPATVKEENASAKFEN-GVLSVILPK 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEG-----------GSCE-SFVLPHGVNPDGFETSM 176
+ V + I G++ +E GS F LP + DG +
Sbjct: 26 DPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG 85
Query: 177 DDPGVLTVTFKKKP 190
+ GVL + K+P
Sbjct: 86 RN-GVLEIRIPKRP 98
Score = 32.4 bits (75), Expect = 0.022
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 6 WEEDENTVLFK--LPLASGTKQEGVKVAIEDHKLFIS----EEAGTSLNQY------FGM 53
+E+ N + LP G ++V ++ L I E+ T ++ +G
Sbjct: 9 IKEEVNHFVLYADLP---GIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGS 65
Query: 54 Y---VNLPVGLNPDSFETSMDQTGLLTVRFKK 82
+ LP + D + G+L +R K
Sbjct: 66 FHRRFALPDSADADGITAAGRN-GVLEIRIPK 96
Score = 25.1 bits (56), Expect = 9.6
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 163 LPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKK 198
LP G++P E MD G+L++ ++K + ++
Sbjct: 22 LP-GIDPSQIEVQMDK-GILSIRGERKSESSTETER 55
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 42.6 bits (101), Expect = 1e-05
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 129 KKEDLVVGVVDRQFLII-GQQLNEKKEGGSCE--------SFVLPHGVNPDGF-ETSMDD 178
KE + V + LII ++ + LP+ V D ++
Sbjct: 46 NKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN 105
Query: 179 PGVLTVTFKKKPSKDGKKKKE 199
GVLT+ + K E
Sbjct: 106 -GVLTIRIPIAGTS--VFKFE 123
Score = 26.4 bits (59), Expect = 4.5
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 163 LPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKE 199
L G N + + + L + +++ ++ G K
Sbjct: 42 LA-GFNKEKIKARVSGQNELIIEAEREITEPGVKYLT 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.22
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 30/103 (29%)
Query: 154 EGGSCESFVLPHGVNPDGFETSMDDP-------GVLTVTFKK---KPSKDGKKKKEKI-- 201
+ S L HG E + P L F K +P++ E
Sbjct: 2 DAYSTRPLTLSHG----SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 202 --LKSRLLG-----------GLAEACLLAG-CKFACDELTGDD 230
L + LG G + L +F L G+D
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response,
innate immunity, secreted, sugar binding protein; NMR
{Plodia interpunctella}
Length = 130
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 156 GSCESFVLPHGV----NPDGFETSMDDPGVLTVTF 186
+ +V+P P G S+ D G F
Sbjct: 7 PRAQQYVVPSAKLEAIYPRGLRVSIPDDGFSLFAF 41
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 26.9 bits (59), Expect = 3.7
Identities = 4/35 (11%), Positives = 17/35 (48%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS 40
W + V ++ + GT+ + ++ ++ + ++
Sbjct: 18 WYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALA 52
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 26.7 bits (59), Expect = 4.4
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS 40
W+++ N + + P+ +K+ + K+ +
Sbjct: 9 WDQELNEINIQFPVTGDADSSAIKIRMVGKKICVK 43
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics,
NPPSFA; 2.30A {Streptomyces coelicolor}
Length = 340
Score = 26.6 bits (58), Expect = 6.9
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 5 FWEEDENTVLFKL-PLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNP 63
E + P+ EGV+ A E H I+ + T+ + GLN
Sbjct: 150 MIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNF 209
Query: 64 DS 65
D
Sbjct: 210 DP 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.389
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,452,114
Number of extensions: 197383
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 29
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)