Query 035679
Match_columns 113
No_of_seqs 139 out of 204
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 6.7E-37 1.4E-41 202.3 5.3 60 54-113 1-60 (60)
2 PF07172 GRP: Glycine rich pro 95.2 0.032 7E-07 39.4 3.9 7 1-8 1-7 (95)
3 PF09257 BCMA-Tall_bind: BCMA, 59.4 7.6 0.00017 24.0 1.7 21 58-78 16-36 (39)
4 PF15128 T_cell_tran_alt: T-ce 56.8 13 0.00029 26.7 2.9 23 2-24 26-48 (92)
5 PF15284 PAGK: Phage-encoded v 55.8 18 0.0004 24.3 3.3 27 4-30 4-30 (61)
6 PF12606 RELT: Tumour necrosis 46.8 35 0.00075 21.8 3.4 23 7-29 7-29 (50)
7 PF15240 Pro-rich: Proline-ric 39.5 22 0.00049 28.1 2.0 18 7-24 2-19 (179)
8 PF11912 DUF3430: Protein of u 38.8 27 0.00058 26.0 2.2 13 5-17 2-14 (212)
9 PF02532 PsbI: Photosystem II 37.8 69 0.0015 19.6 3.5 26 1-26 1-26 (36)
10 PF15330 SIT: SHP2-interacting 35.6 53 0.0011 23.6 3.3 17 10-26 9-25 (107)
11 PF09889 DUF2116: Uncharacteri 34.1 52 0.0011 21.6 2.8 17 5-21 39-55 (59)
12 PF10731 Anophelin: Thrombin i 32.5 77 0.0017 21.6 3.4 6 23-28 18-23 (65)
13 PF04885 Stig1: Stigma-specifi 31.6 27 0.00058 26.3 1.2 11 78-89 71-81 (136)
14 PF01826 TIL: Trypsin Inhibito 30.8 2.2 4.8E-05 26.0 -4.0 38 54-95 9-46 (55)
15 PLN02708 Probable pectinestera 28.6 1.1E+02 0.0024 27.7 4.7 20 56-75 44-63 (553)
16 PF07699 GCC2_GCC3: GCC2 and G 27.4 81 0.0017 18.8 2.7 28 82-109 10-41 (48)
17 PF08027 Albumin_I: Albumin I; 27.1 14 0.0003 27.8 -0.9 12 81-92 37-48 (120)
18 PF15079 DUF4546: Domain of un 21.5 32 0.0007 27.8 0.1 21 71-91 168-189 (205)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=6.7e-37 Score=202.31 Aligned_cols=60 Identities=65% Similarity=1.533 Sum_probs=59.4
Q ss_pred CChHHhhHHhhcCCCCchHHHHHhHhcCcccccCCCCCCCCCCCCCcccccccCCCCCCC
Q 035679 54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYDACPCYANMTTHGGRHKCP 113 (113)
Q Consensus 54 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~~CpCY~~~~t~~g~~KCP 113 (113)
||+++|++||++++++++|||+||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 699999999999999999999999999999999999999999999999999999999999
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.17 E-value=0.032 Score=39.40 Aligned_cols=7 Identities=57% Similarity=0.662 Sum_probs=4.6
Q ss_pred CchhHHHH
Q 035679 1 MALSKSLT 8 (113)
Q Consensus 1 MA~sk~l~ 8 (113)
|| ||.++
T Consensus 1 Ma-SK~~l 7 (95)
T PF07172_consen 1 MA-SKAFL 7 (95)
T ss_pred Cc-hhHHH
Confidence 88 77444
No 3
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=59.40 E-value=7.6 Score=24.00 Aligned_cols=21 Identities=33% Similarity=0.885 Sum_probs=16.5
Q ss_pred HhhHHhhcCCCCchHHHHHhH
Q 035679 58 ACAARCQLSSRPRLCKRACGT 78 (113)
Q Consensus 58 ~C~~RCs~~~~~~~C~~~C~~ 78 (113)
-|.-|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999998788899999985
No 4
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=56.78 E-value=13 Score=26.70 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 035679 2 ALSKSLTGSFLIISLVIHVFQLA 24 (113)
Q Consensus 2 A~sk~l~~~llisLl~i~~l~~v 24 (113)
+++|+|+.=|+++||+|.+.--+
T Consensus 26 ~ifkllL~WlvlsLl~I~lAWk~ 48 (92)
T PF15128_consen 26 QIFKLLLGWLVLSLLAIHLAWKV 48 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888885544433
No 5
>PF15284 PAGK: Phage-encoded virulence factor
Probab=55.76 E-value=18 Score=24.29 Aligned_cols=27 Identities=15% Similarity=-0.044 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc
Q 035679 4 SKSLTGSFLIISLVIHVFQLAQSDGLM 30 (113)
Q Consensus 4 sk~l~~~llisLl~i~~l~~v~a~~~~ 30 (113)
.|-++++|++.|.++..-..+.|++++
T Consensus 4 ~ksifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 455565666666665555556665543
No 6
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=46.78 E-value=35 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 035679 7 LTGSFLIISLVIHVFQLAQSDGL 29 (113)
Q Consensus 7 l~~~llisLl~i~~l~~v~a~~~ 29 (113)
+.+++++.+|.+++.++..+-++
T Consensus 7 V~i~iv~~lLg~~I~~~~K~ygY 29 (50)
T PF12606_consen 7 VSIFIVMGLLGLSICTTLKAYGY 29 (50)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 33356666677778888877554
No 7
>PF15240 Pro-rich: Proline-rich
Probab=39.45 E-value=22 Score=28.11 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035679 7 LTGSFLIISLVIHVFQLA 24 (113)
Q Consensus 7 l~~~llisLl~i~~l~~v 24 (113)
||++|.++||++|..+-.
T Consensus 2 LlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQST 19 (179)
T ss_pred hhHHHHHHHHHhhhcccc
Confidence 555777888885555543
No 8
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=38.80 E-value=27 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 035679 5 KSLTGSFLIISLV 17 (113)
Q Consensus 5 k~l~~~llisLl~ 17 (113)
|+|+.+|||++++
T Consensus 2 Kll~~lilli~~~ 14 (212)
T PF11912_consen 2 KLLISLILLILLI 14 (212)
T ss_pred cHHHHHHHHHHHH
Confidence 5655444444444
No 9
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=37.75 E-value=69 Score=19.56 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Q 035679 1 MALSKSLTGSFLIISLVIHVFQLAQS 26 (113)
Q Consensus 1 MA~sk~l~~~llisLl~i~~l~~v~a 26 (113)
|...|+++-.+++.++.++++...-.
T Consensus 1 M~~LK~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 1 MLTLKIFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeehhhHHHHHHHHhccccCC
Confidence 66778888777777766666766543
No 10
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=35.64 E-value=53 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035679 10 SFLIISLVIHVFQLAQS 26 (113)
Q Consensus 10 ~llisLl~i~~l~~v~a 26 (113)
+||+.++++++++-...
T Consensus 9 llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 9 LLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555566665543
No 11
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.14 E-value=52 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035679 5 KSLTGSFLIISLVIHVF 21 (113)
Q Consensus 5 k~l~~~llisLl~i~~l 21 (113)
+.+++++++++|++.++
T Consensus 39 ~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 39 QYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554433
No 12
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=32.45 E-value=77 Score=21.55 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=3.0
Q ss_pred HHHhcc
Q 035679 23 LAQSDG 28 (113)
Q Consensus 23 ~v~a~~ 28 (113)
.++++.
T Consensus 18 ~vQ~AP 23 (65)
T PF10731_consen 18 IVQSAP 23 (65)
T ss_pred HHhcCc
Confidence 555543
No 13
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=31.59 E-value=27 Score=26.30 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=5.6
Q ss_pred HhcCcccccCCC
Q 035679 78 TCCARCDCVPPG 89 (113)
Q Consensus 78 ~CC~~C~CVP~G 89 (113)
+||.. +||.-+
T Consensus 71 ~CC~~-~Cvdv~ 81 (136)
T PF04885_consen 71 TCCNN-KCVDVS 81 (136)
T ss_pred cccCC-cCCccC
Confidence 34544 555554
No 14
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=30.84 E-value=2.2 Score=26.02 Aligned_cols=38 Identities=32% Similarity=0.921 Sum_probs=26.5
Q ss_pred CChHHhhHHhhcCCCCchHHHHHhHhcCcccccCCCCCCCCC
Q 035679 54 DCDGACAARCQLSSRPRLCKRACGTCCARCDCVPPGTSGNYD 95 (113)
Q Consensus 54 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~ 95 (113)
+|++.|...|+.......|... |=.-|.| |+|++-|.+
T Consensus 9 ~C~~~C~~tC~~~~~~~~C~~~---C~~gC~C-~~G~v~~~~ 46 (55)
T PF01826_consen 9 ECGSPCPRTCDNPNNPEPCSEP---CVEGCFC-PPGYVRNDN 46 (55)
T ss_dssp SSETSTTCBSSCTTTSSSCSSS----ESEEEE-TTTEEEETT
T ss_pred cccCCcCCcCCCCCCCcCcCCC---CCccCCC-CCCeeEcCC
Confidence 6999999999987777666633 3344667 567776554
No 15
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=28.65 E-value=1.1e+02 Score=27.70 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.3
Q ss_pred hHHhhHHhhcCCCCchHHHH
Q 035679 56 DGACAARCQLSSRPRLCKRA 75 (113)
Q Consensus 56 ~~~C~~RCs~~~~~~~C~~~ 75 (113)
+..=..-|+.+.+++.|...
T Consensus 44 ~~~I~s~C~~T~YP~lC~sS 63 (553)
T PLN02708 44 PPQILLACNATRFPDTCVSS 63 (553)
T ss_pred cHHHHHhccCCCCcHHHHHH
Confidence 44556679999999999875
No 16
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=27.38 E-value=81 Score=18.76 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=20.1
Q ss_pred cccccCCCCCCCC---CCC-CCcccccccCCC
Q 035679 82 RCDCVPPGTSGNY---DAC-PCYANMTTHGGR 109 (113)
Q Consensus 82 ~C~CVP~Gt~gnk---~~C-pCY~~~~t~~g~ 109 (113)
.|.=.|.|||-+. .+| +|-.+..|...+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~G 41 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEG 41 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCcC
Confidence 4555689999854 579 899998876543
No 17
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=27.06 E-value=14 Score=27.77 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=7.6
Q ss_pred CcccccCCCCCC
Q 035679 81 ARCDCVPPGTSG 92 (113)
Q Consensus 81 ~~C~CVP~Gt~g 92 (113)
.+|.|+|-|..+
T Consensus 37 s~CrCiP~~l~~ 48 (120)
T PF08027_consen 37 SDCRCIPWGLFV 48 (120)
T ss_dssp TTSEEEE-SSS-
T ss_pred CCeeEEEeeecc
Confidence 468899987654
No 18
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=21.52 E-value=32 Score=27.76 Aligned_cols=21 Identities=29% Similarity=0.766 Sum_probs=16.0
Q ss_pred hHHHHHhHhcCcc-cccCCCCC
Q 035679 71 LCKRACGTCCARC-DCVPPGTS 91 (113)
Q Consensus 71 ~C~~~C~~CC~~C-~CVP~Gt~ 91 (113)
..+-.|++||.+| .|..--+|
T Consensus 168 d~lH~C~tCcekcllCalk~n~ 189 (205)
T PF15079_consen 168 DSLHQCRTCCEKCLLCALKNNY 189 (205)
T ss_pred cchhhchhhhhhhhhhhccccc
Confidence 4667799999999 48766554
Done!