Query 035679
Match_columns 113
No_of_seqs 139 out of 204
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9e_C Anti-coagulant protein 37.8 3.1 0.00011 27.2 -1.7 48 54-105 14-78 (84)
2 1xu2_R Tumor necrosis factor r 35.6 15 0.00051 22.7 1.3 21 58-78 19-39 (47)
3 3arc_I Photosystem II reaction 35.1 56 0.0019 19.3 3.7 27 1-27 1-27 (38)
4 2htq_A Neuraminidase; zanamivi 25.6 27 0.00093 29.5 1.6 17 87-103 187-203 (390)
5 1jdm_A Sarcolipin; helix, memb 23.1 65 0.0022 18.2 2.4 12 10-21 14-25 (31)
6 3tje_F Tumor necrosis factor r 19.6 35 0.0012 24.5 1.0 23 77-102 41-72 (156)
7 1f8d_A Neuraminidase; hydrolas 18.9 23 0.00078 30.0 -0.1 17 87-103 188-204 (388)
8 4gdi_A Neuraminidase; influenz 18.7 22 0.00076 29.9 -0.3 16 87-102 190-205 (373)
9 1v0z_A Neuraminidase; glycosid 18.6 24 0.00081 29.9 -0.1 17 87-103 188-204 (389)
10 1nmb_N N9 neuraminidase; compl 18.2 34 0.0012 29.6 0.8 15 88-102 271-285 (470)
No 1
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=37.76 E-value=3.1 Score=27.24 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=20.4
Q ss_pred CChH-HhhHHhhcC-------CC-CchH-HHHHhHhcCcccccCCCCCCCC-------CCCCCcccccc
Q 035679 54 DCDG-ACAARCQLS-------SR-PRLC-KRACGTCCARCDCVPPGTSGNY-------DACPCYANMTT 105 (113)
Q Consensus 54 ~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t 105 (113)
+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-..
T Consensus 14 ~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~ 78 (84)
T 2h9e_C 14 SCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFI 78 (84)
T ss_dssp -------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEE
T ss_pred CCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeE
Confidence 7999 999999863 22 3578 66665 577885 4888774 46888765443
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=35.57 E-value=15 Score=22.69 Aligned_cols=21 Identities=33% Similarity=0.925 Sum_probs=17.3
Q ss_pred HhhHHhhcCCCCchHHHHHhH
Q 035679 58 ACAARCQLSSRPRLCKRACGT 78 (113)
Q Consensus 58 ~C~~RCs~~~~~~~C~~~C~~ 78 (113)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 389999977777899999963
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=35.07 E-value=56 Score=19.32 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhc
Q 035679 1 MALSKSLTGSFLIISLVIHVFQLAQSD 27 (113)
Q Consensus 1 MA~sk~l~~~llisLl~i~~l~~v~a~ 27 (113)
|...|+++-.+++.++.++++.....|
T Consensus 1 MltLKi~Vy~vV~ffvsLFiFGfLsnD 27 (38)
T 3arc_I 1 METLKITVYIVVTFFVLLFVFGFLSGD 27 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred CeeEEeeehhHHHHHHHHHHccccCCC
Confidence 677788887777777776667766443
No 4
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=25.58 E-value=27 Score=29.53 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCcccc
Q 035679 87 PPGTSGNYDACPCYANM 103 (113)
Q Consensus 87 P~Gt~gnk~~CpCY~~~ 103 (113)
.+|+.++.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999754
No 5
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.07 E-value=65 Score=18.20 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 035679 10 SFLIISLVIHVF 21 (113)
Q Consensus 10 ~llisLl~i~~l 21 (113)
++||.+|+|+++
T Consensus 14 ~vLI~vlLi~ll 25 (31)
T 1jdm_A 14 IVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566677775443
No 6
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=19.64 E-value=35 Score=24.49 Aligned_cols=23 Identities=35% Similarity=0.911 Sum_probs=14.0
Q ss_pred hHhcCcccccCCCCCCC--------CCCC-CCccc
Q 035679 77 GTCCARCDCVPPGTSGN--------YDAC-PCYAN 102 (113)
Q Consensus 77 ~~CC~~C~CVP~Gt~gn--------k~~C-pCY~~ 102 (113)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4566666 6787732 3567 67655
No 7
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=18.94 E-value=23 Score=29.98 Aligned_cols=17 Identities=29% Similarity=0.808 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCcccc
Q 035679 87 PPGTSGNYDACPCYANM 103 (113)
Q Consensus 87 P~Gt~gnk~~CpCY~~~ 103 (113)
.+|+.++.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999754
No 8
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=18.67 E-value=22 Score=29.94 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCccc
Q 035679 87 PPGTSGNYDACPCYAN 102 (113)
Q Consensus 87 P~Gt~gnk~~CpCY~~ 102 (113)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3678889999999954
No 9
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=18.60 E-value=24 Score=29.91 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCcccc
Q 035679 87 PPGTSGNYDACPCYANM 103 (113)
Q Consensus 87 P~Gt~gnk~~CpCY~~~ 103 (113)
.+|+.++.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46888999999999764
No 10
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=18.23 E-value=34 Score=29.62 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccc
Q 035679 88 PGTSGNYDACPCYAN 102 (113)
Q Consensus 88 ~Gt~gnk~~CpCY~~ 102 (113)
+|+.++.|||.||-+
T Consensus 271 ~~~~~HiEECscy~~ 285 (470)
T 1nmb_N 271 TGTAKHIEECSCYGE 285 (470)
T ss_dssp CSSCSCCCSCEEEEE
T ss_pred CCCcCceEeeeEecC
Done!