BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035681
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 90/181 (49%), Gaps = 38/181 (20%)
Query: 93 LLESAIKTYQLNYHLKSTGVLDANTVAKMTIPRCGVADIVNGTTRMRSGKKRQQHNHHFR 152
+L+ +K Q + L TG LD NT+ M PRCG D+ N
Sbjct: 38 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------- 78
Query: 153 TVSHYSFFPRSPKWPASKFS-----LTYAFRPGTRSDAITPVARAFQTWAANTQFKFSKI 207
Y+FFPR PKW ++ + T P T DA ARAFQ W+ T +FS+I
Sbjct: 79 ----YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRI 131
Query: 208 EDFANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAV 264
D ADI I+F +HGDG PFDG+ +G++AHAFAP G H+D DE W +G
Sbjct: 132 HD-GEADIMINFGRWEHGDGYPFDGK---DGLLAHAFAPGTGVGGDSHFDDDELWTLGEG 187
Query: 265 Q 265
Q
Sbjct: 188 Q 188
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 252 HYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDI 311
+YD D W QG + L VA S GA+M P + L DDI
Sbjct: 349 NYDDDRKWGFCPDQG-YSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDI 407
Query: 312 QGIRDLY 318
+GI++LY
Sbjct: 408 KGIQELY 414
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 90/181 (49%), Gaps = 38/181 (20%)
Query: 93 LLESAIKTYQLNYHLKSTGVLDANTVAKMTIPRCGVADIVNGTTRMRSGKKRQQHNHHFR 152
+L+ +K Q + L TG LD NT+ M PRCG D+ N
Sbjct: 40 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------- 80
Query: 153 TVSHYSFFPRSPKWPASKFS-----LTYAFRPGTRSDAITPVARAFQTWAANTQFKFSKI 207
Y+FFPR PKW ++ + T P T DA ARAFQ W+ T +FS+I
Sbjct: 81 ----YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRI 133
Query: 208 EDFANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAV 264
D ADI I+F +HGDG PFDG+ +G++AHAFAP G H+D DE W +G
Sbjct: 134 HD-GEADIMINFGRWEHGDGYPFDGK---DGLLAHAFAPGTGVGGDSHFDDDELWTLGEG 189
Query: 265 Q 265
Q
Sbjct: 190 Q 190
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 252 HYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDI 311
+YD D W QG + L VA S GA+M P + L DDI
Sbjct: 351 NYDDDRKWGFCPDQG-YSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDI 409
Query: 312 QGIRDLY 318
+GI++LY
Sbjct: 410 KGIQELY 416
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 115/259 (44%), Gaps = 35/259 (13%)
Query: 63 LKEYMEKFGYLNYDNYKNQSTHADDDDFDELLESAIKTYQLNYHLKSTGVLDANTVAKMT 122
+++Y+EK Y N KN + + +K Q + LK TG DA T+ M
Sbjct: 15 VQKYLEK-----YYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMK 69
Query: 123 IPRCGVADIVNGTTRMRSGKKRQQHNHHFRTVSHYSFFPRSPKWPASKFSLTYAFRPGTR 182
PRCGV D+ + G R + H + +Y+ P P R
Sbjct: 70 QPRCGVPDVAQFV--LTEGNPRWEQTHLTYRIENYT-----PDLP--------------R 108
Query: 183 SDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIAH 242
+D + +AFQ W+ T F+K+ + ADI ISF GDH D +PFD GP G +AH
Sbjct: 109 ADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD---GPGGNLAH 164
Query: 243 AFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSIS 299
AF P G H+D DE W + ++L VA S+ GA+MYPS +
Sbjct: 165 AFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT 222
Query: 300 AGVTKGLHGDDIQGIRDLY 318
L DDI GI+ +Y
Sbjct: 223 FSGDVQLAQDDIDGIQAIY 241
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 157 YSFFPRSPKWPASKFSL-----TYAFRPGTRSDAITPVARAFQTWAANTQFKFSKIEDFA 211
Y+FFPR PKW ++ + T P T DA ARAFQ W+ T +FS+I D
Sbjct: 1 YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-G 56
Query: 212 NADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAF 268
ADI I+F +HGDG PFDG+ +G++AHAFAP G H+D DE W +G G +
Sbjct: 57 EADIMINFGRWEHGDGYPFDGK---DGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVG-Y 112
Query: 269 DLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLYNV 320
L VA S GA+M P + L DDI+GI++LY
Sbjct: 113 SLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGA 164
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 127/281 (45%), Gaps = 47/281 (16%)
Query: 48 LKGCHKGDKIKGIHELKEYMEKFGYLNYDNYKNQSTHADDDDFDELLESAIKTYQLNYHL 107
L G +G+ ++ +++Y+E + YD K+ D +++ I+ Q L
Sbjct: 3 LDGAARGEDT-SMNLVQKYLENY----YDLKKDVKQFVRRKDSGPVVKK-IREMQKFLGL 56
Query: 108 KSTGVLDANTVAKMTIPRCGVADIVNGTTRMRSGKKRQQHNHHFRTVSHYSFFPRSPKWP 167
+ TG LD++T+ M PRCGV D+ HFRT FP PKW
Sbjct: 57 EVTGKLDSDTLEVMRKPRCGVPDV-----------------GHFRT------FPGIPKW- 92
Query: 168 ASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISFESGD 223
K LTY + P DA+ + V +A + W T FS++ + ADI ISF +
Sbjct: 93 -RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAVRE 150
Query: 224 HGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXX 280
HGD PFD GP ++AHA+AP NG H+D DE W +L VA
Sbjct: 151 HGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGH 205
Query: 281 XXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
S+ A+MYP S++ L DDI GI+ LY
Sbjct: 206 SLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 246
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 157 YSFFPRSPKWPASKFSL-----TYAFRPGTRSDAITPVARAFQTWAANTQFKFSKIEDFA 211
Y+FFPR PKW ++ + T P T DA ARAFQ W+ T +FS+I D
Sbjct: 2 YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-G 57
Query: 212 NADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAF 268
ADI I+F +HGDG PFDG+ +G++AHAFAP G H+D DE W +
Sbjct: 58 EADIMINFGRWEHGDGYPFDGK---DGLLAHAFAPGTGVGGDSHFDDDELWT--NTSANY 112
Query: 269 DLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M P + L DDI+GI++LY
Sbjct: 113 SLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELY 162
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 162 RSPKWPASKFSL-----TYAFRPGTRSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
R PKW ++ + T P T DA ARAFQ W+ T +FS+I D ADI
Sbjct: 1 RKPKWDKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIM 56
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
I+F +HGDG PFDG+ +G++AHAFAP G H+D DE W++G G + L V
Sbjct: 57 INFGRWEHGDGYPFDGK---DGLLAHAFAPGTGVGGDSHFDDDELWSLGKGVG-YSLFLV 112
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLYNV 320
A S GA+M P + L DDI+GI++LY
Sbjct: 113 AAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGA 159
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 190 ARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP--- 246
ARAF W+A T F+++ +ADI I F +HGDG PFDG+ +G++AHAF P
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGK---DGLLAHAFPPGPG 92
Query: 247 TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGL 306
G H+D DE W++G QG + L VA SSV A+MYP L
Sbjct: 93 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPL 151
Query: 307 HGDDIQGIRDLY 318
H DD+ GIR LY
Sbjct: 152 HKDDVNGIRHLY 163
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 190 ARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP--- 246
ARAF W+A T F+++ +ADI I F +HGDG PFDG+ +G++AHAF P
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGK---DGLLAHAFPPGPG 92
Query: 247 TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGL 306
G H+D DE W++G QG + L VA SSV A+MYP L
Sbjct: 93 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPL 151
Query: 307 HGDDIQGIRDLY 318
H DD+ GIR LY
Sbjct: 152 HKDDVNGIRHLY 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 190 ARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP--- 246
ARAF W+A T F+++ +ADI I F +HGDG PFDG+ +G++AHAF P
Sbjct: 33 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGK---DGLLAHAFPPGPG 88
Query: 247 TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGL 306
G H+D DE W++G QG + L VA SSV A+MYP L
Sbjct: 89 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPL 147
Query: 307 HGDDIQGIRDLY 318
H DD+ GIR LY
Sbjct: 148 HKDDVNGIRHLY 159
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 164 PKWPASKFSLTY---AFRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
PKW K +LTY + P S + V A Q W++ F +I ADI ISF
Sbjct: 3 PKW--KKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISF 59
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
E+GDHGD PFD GP G +AHAFAP G H+D E W +G F+L TVA
Sbjct: 60 ENGDHGDSYPFD---GPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGT--NGFNLFTVAAH 114
Query: 277 XXXXXXXXXXSSVEGAIMYPSISAGVTKGLH--GDDIQGIRDLY 318
S+ A+MYP+ G H DD++GI+ LY
Sbjct: 115 EFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALY 158
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 181 TRSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGII 240
T ++ + AF W+ + F ++ + ADIKI +E G+HGDG PFDG GI+
Sbjct: 25 TTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGN---TGIL 81
Query: 241 AHAFAPT------NGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIM 294
AHAF P G H+D DE W++ DL TVA S+V A+M
Sbjct: 82 AHAFYPPPAGGNYAGHLHFDDDENWSING--SGIDLITVAAHEIGHLLGIEHSNVSSALM 139
Query: 295 YPSISAGVTKGLHGDDIQGIRDLY 318
YP + G+ + L DD + DLY
Sbjct: 140 YPYYT-GIKRQLDNDDCLAVWDLY 162
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 181 TRSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGII 240
T ++ + AF W+ + F ++ + ADIKI +E G+HGDG PFDG GI+
Sbjct: 25 TTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGN---TGIL 81
Query: 241 AHAFAPT------NGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIM 294
AHAF P G H+D DE W++ DL TVA S+V A+M
Sbjct: 82 AHAFYPPPAGGNYAGHLHFDDDENWSING--SGIDLITVAAHEIGHLLGIEHSNVSSALM 139
Query: 295 YPSISAGVTKGLHGDDIQGIRDLY 318
YP + G+ + L DD + DLY
Sbjct: 140 YPYYT-GIKRQLDNDDCLAVWDLY 162
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIK 216
P PKW + +LTY R T + V RA F+ W+ + F+ I ADI
Sbjct: 3 PGGPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQ-GEADIN 59
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
I+F DHGDG+PFD GP GI+AHAF P G H+DA+E W + ++L V
Sbjct: 60 IAFYQRDHGDGSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLV 114
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLYNV 320
A SS GA+MYP+ + T L DDI GI+ +Y +
Sbjct: 115 AAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYGL 163
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%)
Query: 154 VSHYSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIED 209
++ Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 MASYNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD 58
Query: 210 FANADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQG 266
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W +
Sbjct: 59 -GIADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSK 112
Query: 267 AFDLETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
++L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 GYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 166
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIK 216
P +PKW + +LTY R T + V RA F+ W+ + F++I ADI
Sbjct: 5 PGNPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 61
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
I+F DHGD +PFD GP GI+AHAF P G H+DA+E W + ++L V
Sbjct: 62 IAFYQRDHGDNSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLV 116
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS GA+MYP+ + T L DDI GI+ +Y
Sbjct: 117 AAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 163
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIK 216
P +PKW + +LTY R T + V RA F+ W+ + F++I ADI
Sbjct: 4 PGNPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 60
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
I+F DHGD +PFD GP GI+AHAF P G H+DA+E W + ++L V
Sbjct: 61 IAFYQRDHGDNSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLV 115
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS GA+MYP+ + T L DDI GI+ +Y
Sbjct: 116 AAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 162
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIK 216
P +PKW + +LTY R T + V RA F+ W+ + F++I ADI
Sbjct: 5 PGNPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 61
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
I+F DHGD +PFD GP GI+AHAF P G H+DA+E W + ++L V
Sbjct: 62 IAFYQRDHGDNSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLV 116
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS GA+MYP+ + T L DDI GI+ +Y
Sbjct: 117 AAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 163
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GI 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFD 269
ADI ISF +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 163 SPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKIS 218
+P+W + LTY T R+D + +AFQ W+ T F+K+ + ADI IS
Sbjct: 1 NPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 57
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F GDH D +PFD GP G +AHAF P G H+D DE W + ++L VA
Sbjct: 58 FVRGDHRDNSPFD---GPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAA 112
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
S+ GA+MYPS + L DDI GI+ +Y
Sbjct: 113 HELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 155
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 163 SPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKIS 218
+P+W + LTY T R+D + +AFQ W+ T F+K+ + ADI IS
Sbjct: 7 NPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 63
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F GDH D +PFD GP G +AHAF P G H+D DE W + ++L VA
Sbjct: 64 FVRGDHRDNSPFD---GPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAA 118
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
S+ GA+MYPS + L DDI GI+ +Y
Sbjct: 119 HELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 161
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 163 SPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKIS 218
+P+W + LTY T R+D + +AFQ W+ T F+K+ + ADI IS
Sbjct: 7 NPRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 63
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F GDH D +PFD GP G +AHAF P G H+D DE W + ++L VA
Sbjct: 64 FVRGDHRDNSPFD---GPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAA 118
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
S+ GA+MYPS + L DDI GI+ +Y
Sbjct: 119 HALGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 161
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 163 SPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKIS 218
+P+W + LTY T R+D + +AFQ W+ T F+K+ + ADI IS
Sbjct: 6 NPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMIS 62
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F GDH D +PFD GP G +AHAF P G H+D DE W + ++L VA
Sbjct: 63 FVRGDHRDNSPFD---GPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAA 117
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
S+ GA+MYPS + L DDI GI+ +Y
Sbjct: 118 HELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 160
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYAFRPGTRS-DAITP---VARAFQTWAANTQFKFSKIEDFAN 212
YS FP SPKW + +TY TR IT V++A W F K+ +
Sbjct: 1 YSLFPNSPKWTSK--VVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI I F G HGD PFD GP +AHAFAP G H+D DE W G+ G +
Sbjct: 58 ADIMIGFARGAHGDSYPFD---GPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-IN 113
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS A+MYP+ G + L DDI+GI+ LY
Sbjct: 114 FLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 163 SPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIKIS 218
+PKW + +LTY R T + V RA F+ W+ + F++I ADI I+
Sbjct: 1 NPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINIA 57
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F DHGD +PFD GP GI+AHAF P G H+DA+E W + ++L VA
Sbjct: 58 FYQRDHGDNSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLVAA 112
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
SS GA+MYP+ + T L DDI GI+ +Y
Sbjct: 113 HEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 157
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYAFRPGTRS-DAITP---VARAFQTWAANTQFKFSKIEDFAN 212
YS FP SPKW + +TY TR IT V++A W F K+ +
Sbjct: 2 YSLFPNSPKWTSK--VVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 58
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI I F G HGD PFD GP +AHAFAP G H+D DE W G+ G +
Sbjct: 59 ADIMIGFARGAHGDSYPFD---GPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-IN 114
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS A+MYP+ G + L DDI+GI+ LY
Sbjct: 115 FLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 163 SPKWPASKFSLTYAFRPGTRSDAITPVARA----FQTWAANTQFKFSKIEDFANADIKIS 218
+PKW + +LTY R T + V RA F+ W+ + F++I ADI I+
Sbjct: 2 NPKW--ERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINIA 58
Query: 219 FESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAX 275
F DHGD +PFD GP GI+AHAF P G H+DA+E W + ++L VA
Sbjct: 59 FYQRDHGDNSPFD---GPNGILAHAFQPGQGIGGDAHFDAEETWTNTSAN--YNLFLVAA 113
Query: 276 XXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
SS GA+MYP+ + T L DDI GI+ +Y
Sbjct: 114 HEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 158
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFANADI 215
FPR+ KW SK +LTY + P T S+ +AF+ W+ T F+++ D ADI
Sbjct: 4 FPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAPT---NGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP G++AHAF P G H+D DE W + ++L
Sbjct: 61 MISFGIKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 17/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPG-TRSDAITPVARAFQTWAANTQFKFSKIEDFAN 212
Y+ FPR+ KW S+ +LTY + P + S+ +AF+ W+ T F++I D
Sbjct: 1 YNVFPRTLKW--SQTNLTYRIVNYTPDMSHSEVEKAFRKAFKVWSDVTPLNFTRIYD-GT 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI ISF + +HGD PFD GP G++AHAF P G H+D DE W + ++
Sbjct: 58 ADIMISFGTKEHGDFYPFD---GPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP--SISAGVTKGLHGDDIQGIRDLY 318
L VA S GA+M+P + + L DD+QGI+ LY
Sbjct: 113 LFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLY 163
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYAFRPGTRS-DAITP---VARAFQTWAANTQFKFSKIEDFAN 212
YS FP SPKW + +TY TR IT V++A W F K+ +
Sbjct: 1 YSLFPNSPKWTSK--VVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI I F G HGD PFD GP +AHAFAP G H+D DE W G+ G +
Sbjct: 58 ADIMIGFARGAHGDSYPFD---GPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-IN 113
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS A+MYP+ G + L DDI+GI+ LY
Sbjct: 114 FLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R+D + +AFQ W+ T F+K+ + ADI ISF GDH D +PFD GP G +A
Sbjct: 20 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD---GPGGNLA 75
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + ++L VA S+ GA+MYPS
Sbjct: 76 HAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSY 133
Query: 299 SAGVTKGLHGDDIQGIRDLY 318
+ L DDI GI+ +Y
Sbjct: 134 TFSGDVQLAQDDIDGIQAIY 153
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R+D + +AFQ W+ T F+K+ + ADI ISF GDH D +PFD GP G +A
Sbjct: 26 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD---GPGGNLA 81
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + ++L VA S+ GA+MYPS
Sbjct: 82 HAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSY 139
Query: 299 SAGVTKGLHGDDIQGIRDLY 318
+ L DDI GI+ +Y
Sbjct: 140 TFSGDVQLAQDDIDGIQAIY 159
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 157 YSFFPRSPKWPASKFSLTYAFRPGTRS-DAITP---VARAFQTWAANTQFKFSKIEDFAN 212
YS FP SPKW + +TY TR IT V++A W F K+ +
Sbjct: 2 YSLFPNSPKWTSK--VVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 58
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFD 269
ADI I F G HGD PFD GP +AHAFAP G H+D DE W G+ G +
Sbjct: 59 ADIMIGFARGAHGDSYPFD---GPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-IN 114
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKG--LHGDDIQGIRDLY 318
A SS A+MYP+ G + L DDI+GI+ LY
Sbjct: 115 FLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 64 KEYMEKFGYLNYDNYKNQSTHADDDDFDELLESAIKTYQLNYHLKSTGVLDANTVAKMTI 123
+EY+ ++GY + +S + L A+ Q L TG LD+ T+ M
Sbjct: 27 EEYLYRYGYTRVAEMRGES---------KSLGPALLLLQKQLSLPETGELDSATLKAMRT 77
Query: 124 PRCGVADIVNGTTRMRSGKKRQQHNHHFRTVSHYSF-FPRSPKWPASKFSLTYAFRPGTR 182
PRCGV D+ G + G + H++ + +YS PR+
Sbjct: 78 PRCGVPDL--GRFQTFEGDLKWHHHNITYWIQNYSEDLPRA-----------------VI 118
Query: 183 SDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIAH 242
DA ARAF W+A T F+++ +ADI I F +HGDG PFDG+ +G++AH
Sbjct: 119 DDAF---ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGK---DGLLAH 171
Query: 243 AFAP---TNGRFHYDADEPWAVG 262
AF P G H+D DE W++G
Sbjct: 172 AFPPGPGIQGDAHFDDDELWSLG 194
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 252 HYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDI 311
++D+D+ W QG + L VA SSV A+MYP LH DD+
Sbjct: 359 NFDSDKKWGFCPDQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 417
Query: 312 QGIRDLY 318
GIR LY
Sbjct: 418 NGIRHLY 424
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R+D + +AFQ W+ T F+K+ + ADI ISF GDH D +PFD GP G +A
Sbjct: 26 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD---GPGGNLA 81
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + ++L VA S+ GA+MYPS
Sbjct: 82 HAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSY 139
Query: 299 SAGVTKGLHGDDIQGIRDLY 318
+ L DDI GI+ +Y
Sbjct: 140 TFSGDVQLAQDDIDGIQAIY 159
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R+D + +AFQ W+ T F+K+ + ADI ISF GDH D +PFD GP G +A
Sbjct: 27 RADVDHAIEKAFQLWSDVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFD---GPGGNLA 82
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + ++L VA S+ GA+MYPS
Sbjct: 83 HAFDPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSY 140
Query: 299 SAGVTKGLHGDDIQGIRDLY 318
+ L DDI GI+ +Y
Sbjct: 141 TFSGDVQLAQDDIDGIQAIY 160
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 161 PRSPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
P +P+W + LTY T R D + +AFQ W+ + F+K+ + ADI
Sbjct: 5 PGNPRWENTH--LTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE-GQADIM 61
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
ISF GDH D +PFD GP G +AHAF P G H+D DE W ++L V
Sbjct: 62 ISFVRGDHRDNSPFD---GPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRD--YNLYRV 116
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAGVTKGLHGDDIQGIRDLY 318
A S+ GA+MYP+ L DDI GI+ +Y
Sbjct: 117 AAHELGHSLGLSHSTDIGALMYPNYIYTGDVQLSQDDIDGIQAIY 161
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 181 TRSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGII 240
R VA A Q W+ T F+++ + ADI I F HGD PFD GP GI+
Sbjct: 26 VREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLPFD---GPGGIL 81
Query: 241 AHAFAPTN---GRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPS 297
AHAF P G H+D DE W +G QG DL VA ++ A+M P
Sbjct: 82 AHAFFPKTHREGDVHFDYDETWTIGDNQGT-DLLQVAAHEFGHVLGLQHTTAAKALMSPF 140
Query: 298 ISAGVTKGLHGDDIQGIRDLYN 319
+ L DD +GI+ LY
Sbjct: 141 YTFRYPLSLSPDDRRGIQHLYG 162
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFD GP ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 1 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 57
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFDG G ++AHA+AP NG H+D DE W +L
Sbjct: 58 MISFAVREHGDFYPFDGPG---NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 112
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 113 VAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 161
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFDG G ++AHA+AP NG H+D DE W +L
Sbjct: 61 MISFAVREHGDFYPFDGPG---NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+MYP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 181 TRSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGII 240
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+
Sbjct: 21 NREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG---GIL 76
Query: 241 AHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPS 297
AHAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 77 AHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPT 134
Query: 298 ISAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 135 YKYVDINTFRLSADDIRGIQSLY 157
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
P P W K +TY T R D + +AFQ W+ T KFSKI ADI
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 62
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
+ F G HGD + FDG+G GI+AHAF P G H+D DE W + G +L
Sbjct: 63 VVFARGAHGDFHAFDGKG---GILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLT 117
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAG--VTKGLHGDDIQGIRDLY 318
A SS A+M+P+ T L DDI+GI+ LY
Sbjct: 118 AVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 164
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
P P W K +TY T R D + +AFQ W+ T KFSKI ADI
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 61
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
+ F G HGD + FDG+G GI+AHAF P G H+D DE W + G +L
Sbjct: 62 VVFARGAHGDFHAFDGKG---GILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLT 116
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAG--VTKGLHGDDIQGIRDLY 318
A SS A+M+P+ T L DDI+GI+ LY
Sbjct: 117 AVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 163
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
P P W K +TY T R D + +AFQ W+ T KFSKI ADI
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 61
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
+ F G HGD + FDG+G GI+AHAF P G H+D DE W + G +L
Sbjct: 62 VVFARGAHGDFHAFDGKG---GILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLT 116
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAG--VTKGLHGDDIQGIRDLY 318
A SS A+M+P+ T L DDI+GI+ LY
Sbjct: 117 AVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 163
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 161 PRSPKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIK 216
P P W K +TY T R D + +AFQ W+ T KFSKI ADI
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 62
Query: 217 ISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETV 273
+ F G HGD + FDG+G GI+AHAF P G H+D DE W + G +L
Sbjct: 63 VVFARGAHGDFHAFDGKG---GILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLT 117
Query: 274 AXXXXXXXXXXXXSSVEGAIMYPSISAG--VTKGLHGDDIQGIRDLY 318
A SS A+M+P+ T L DDI+GI+ LY
Sbjct: 118 AVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 164
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 17 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG---GILA 72
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 73 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 130
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 131 KYVDINTFRLSADDIRGIQSLY 152
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 164 PKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
PKW K LTY + P DA+ + V +A + W T FS++ + ADI ISF
Sbjct: 3 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 59
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
+HGD PFD GP ++AHA+AP NG H+D DE W +L VA
Sbjct: 60 AVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAH 114
Query: 277 XXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
S+ A+MYP S++ L DDI GI+ LY
Sbjct: 115 EIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 159
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 164 PKWPASKFSLTYAFRPGT----RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
P W K +TY T R D + +AFQ W+ T KFSKI ADI + F
Sbjct: 3 PVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVF 59
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
G HGD + FDG+G GI+AHAF P G H+D DE W + G +L A
Sbjct: 60 ARGAHGDFHAFDGKG---GILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVH 114
Query: 277 XXXXXXXXXXSSVEGAIMYPSISAG--VTKGLHGDDIQGIRDLY 318
SS A+M+P+ T L DDI+GI+ LY
Sbjct: 115 AIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY 158
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 16 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG---GILA 71
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 72 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 129
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 130 KYVDINTFRLSADDIRGIQSLY 151
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI + ADI + F G HGD + FDG+G GI+A
Sbjct: 24 REDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKG---GILA 79
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 80 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 137
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 138 KYVDINTFRLSADDIRGIQSLY 159
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG---GILA 78
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 79 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 136
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 137 KYVDINTFRLSADDIRGIQSLY 158
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 164 PKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
PKW K LTY + P DA+ + V +A + W T FS++ + ADI ISF
Sbjct: 3 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 59
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
+HGD PFD GP ++AHA+AP NG H+D DE W +L VA
Sbjct: 60 AVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAH 114
Query: 277 XXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
S+ A+MYP S++ L DDI GI+ LY
Sbjct: 115 EIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 159
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKG---GILA 77
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 136 KYVDINTFRLSADDIRGIQSLY 157
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 164 PKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
PKW K LTY + P DA+ + V +A + W T FS++ + ADI ISF
Sbjct: 2 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 58
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
+HGD PFD GP ++AHA+AP NG H+D DE W +L VA
Sbjct: 59 AVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAH 113
Query: 277 XXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
S+ A+MYP S++ L DDI GI+ LY
Sbjct: 114 EIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 158
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 164 PKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADIKISF 219
PKW K LTY + P DA+ + V +A + W T FS++ + ADI ISF
Sbjct: 2 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 58
Query: 220 ESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXX 276
+HGD PFD GP ++AHA+AP NG H+D DE W +L VA
Sbjct: 59 AVREHGDFYPFD---GPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAH 113
Query: 277 XXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
S+ A+MYP S++ L DDI GI+ LY
Sbjct: 114 EIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 158
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 160 FPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFANADI 215
FP PKW K LTY + P DA+ + V +A + W T FS++ + ADI
Sbjct: 4 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 216 KISFESGDHGDGNPFDGRGGPEGIIAHAFAP---TNGRFHYDADEPWAVGAVQGAFDLET 272
ISF +HGD PFDG G ++AHA+AP NG H+D DE W +L
Sbjct: 61 XISFAVREHGDFYPFDGPG---NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 273 VAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
VA S+ A+ YP S++ L DDI GI+ LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKG---GILA 77
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTY 135
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 136 KYVDINTFRLSADDIRGIQSLY 157
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKG---GILA 78
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 79 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 136
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 137 KYVDINTFRLSADDIRGIQSLY 158
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKG---GILA 77
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 136 KYVDINTFRLSADDIRGIQSLY 157
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 182 RSDAITPVARAFQTWAANTQFKFSKIEDFANADIKISFESGDHGDGNPFDGRGGPEGIIA 241
R D + +AFQ W+ T KFSKI ADI + F G HGD + FDG+G GI+A
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKG---GILA 77
Query: 242 HAFAP---TNGRFHYDADEPWAVGAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
HAF P G H+D DE W + G +L A SS A+M+P+
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
Query: 299 SAG--VTKGLHGDDIQGIRDLY 318
T L DDI+GI+ LY
Sbjct: 136 KYVDINTFRLSADDIRGIQSLY 157
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFAN 212
+S FP PKW K LTY + P DA+ + + +A + W T FS++ +
Sbjct: 1 FSSFPGMPKW--RKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE-GE 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPTNGRF---HYDADEPWAVGAVQGAFD 269
ADI ISF +HGD FDG G +AHA+ P G + H+D DE W A +
Sbjct: 58 ADIMISFAVKEHGDNYSFDGPGHS---LAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
L VA S+ A+MYP S + L DD+ GI+ LY
Sbjct: 113 LFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLY 164
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 157 YSFFPRSPKWPASKFSLTYA---FRPGTRSDAI-TPVARAFQTWAANTQFKFSKIEDFAN 212
+S FP PKW K LTY + P DA+ + + +A + W T FS++ +
Sbjct: 1 FSSFPGMPKW--RKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE-GE 57
Query: 213 ADIKISFESGDHGDGNPFDGRGGPEGIIAHAFAPTNGRF---HYDADEPWAVGAVQGAFD 269
ADI ISF +HGD FDG G +AHA+ P G + H+D DE W A +
Sbjct: 58 ADIMISFAVKEHGDFYSFDGPGHS---LAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTN 112
Query: 270 LETVAXXXXXXXXXXXXSSVEGAIMYP---SISAGVTKGLHGDDIQGIRDLY 318
L VA S+ A+MYP S + L DD+ GI+ LY
Sbjct: 113 LFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLY 164
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 189 VARAFQTWAANTQFKFSKI--EDFANA----DIKISFESGDHGDGNPFDGRGGPEGIIAH 242
+ RAF W T F ++ + N DI I F SG HGD +PFDG G G +AH
Sbjct: 29 IRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEG---GFLAH 85
Query: 243 AFAP---TNGRFHYDADEPWAVG-AVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYPSI 298
A+ P G H+D+DEPW +G DL VA S+ AIM P
Sbjct: 86 AYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFY 145
Query: 299 SAGVTKG--LHGDDIQGIRDLY 318
T L DD+QGI+ +Y
Sbjct: 146 QYMETDNFKLPNDDLQGIQKIY 167
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 189 VARAFQTWAANTQFKFSKIEDFA--------NADIKISFESGDHGDGNPFDGRGGPEGII 240
+ +AF+ W + T +F ++ +A ADI I F G HGD PFDG G G +
Sbjct: 31 IRKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEG---GFL 86
Query: 241 AHAFAP---TNGRFHYDADEPWAV-GAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYP 296
AHA+ P G H+D+ EPW V D+ VA SS AIM P
Sbjct: 87 AHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAP 146
Query: 297 SISAGVTKG--LHGDDIQGIRDLY 318
T+ L DD +GI+ LY
Sbjct: 147 FYQWMDTENFVLPDDDRRGIQQLY 170
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 189 VARAFQTWAANTQFKFSKIEDFA--------NADIKISFESGDHGDGNPFDGRGGPEGII 240
+ +AF+ W + T +F ++ +A ADI I F G HGD PFDG G G +
Sbjct: 33 IRKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEG---GFL 88
Query: 241 AHAFAP---TNGRFHYDADEPWAV-GAVQGAFDLETVAXXXXXXXXXXXXSSVEGAIMYP 296
AHA+ P G H+D+ EPW V D+ VA SS AIM P
Sbjct: 89 AHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAP 148
Query: 297 SISAGVTKG--LHGDDIQGIRDLY 318
T+ L DD +GI+ LY
Sbjct: 149 FYQWMDTENFVLPDDDRRGIQQLY 172
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 46 EHLKGCHKGDKIKGIHELKEYMEKFGYLNYDNYKNQSTHAD 86
E L+ DK + +H LKE ++KF +NYD ++ TH +
Sbjct: 106 ELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLN 146
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 46 EHLKGCHKGDKIKGIHELKEYMEKFGYLNYDNYKNQSTHAD 86
E L+ DK + +H LKE ++KF +NYD ++ TH +
Sbjct: 116 ELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLN 156
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 91 DELLESAIKTYQLNYHLKSTGVLDANTVAKMTIPRCG 127
+E+LE A K L Y + S GV D N K P G
Sbjct: 688 EEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAG 724
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 223 DHGDGNPFDGRGGPEGIIAHAFAPTNGRFHYDADEPW 259
DH GN +D R ++ H + P FH D + W
Sbjct: 36 DHIGGNSYDARDSETNVMVHVYGP--HIFHTDNETVW 70
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 223 DHGDGNPFDGRGGPEGIIAHAFAPTNGRFHYDADEPW 259
DH GN +D R ++ H + P FH D + W
Sbjct: 36 DHIGGNSYDARDSETNVMVHVYGP--HIFHTDNETVW 70
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 223 DHGDGNPFDGRGGPEGIIAHAFAPTNGRFHYDADEPW 259
DH GN +D R ++ H + P FH D + W
Sbjct: 36 DHIGGNSYDARDSETNVMVHVYGPH--IFHTDNETVW 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,085,665
Number of Sequences: 62578
Number of extensions: 443801
Number of successful extensions: 1259
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 87
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)