BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035682
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 166/307 (54%), Gaps = 14/307 (4%)
Query: 53 DRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYR 112
V S+ S NI +RL + + + ++A +N +LL +P + V +LA+N + A W+ R
Sbjct: 16 SEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRR 75
Query: 113 HVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXX 172
+V+ ++P I+VGN++ + DL+ ++LPA+RN++ AL G++
Sbjct: 76 NVVAYWPSVSFRYIAVGNELIPGS-DLAQYILPAMRNIYNALSSAGLQNQIKVSTAVDTG 134
Query: 173 XXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALF 231
PPS+ F A + P++QFL + LVNVYPY Y N +I L +ALF
Sbjct: 135 VLGTSYPPSAGAFSS-AAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLPYALF 193
Query: 232 ENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASEVD 291
+D + Y NLFD +VDAV +A+ G N+ V+V+E+GWPS+G A +
Sbjct: 194 TASGVVVQDGRFS---YQNLFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGA---E 247
Query: 292 ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVKG---ERSWGILHQNFT 348
A+ + A+ Y + L+ H+ G G+P R EAY++E+ + K E+++G+ + N
Sbjct: 248 ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGIEQNFGLFYPNKQ 305
Query: 349 QKYEIEF 355
Y+I F
Sbjct: 306 PVYQISF 312
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 160/310 (51%), Gaps = 20/310 (6%)
Query: 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHV 114
V ++ NI +R+ + + +++ A +N ++L +PN+ + +L N + A+ W+ ++V
Sbjct: 19 VIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSLT-NPSNAKSWVQKNV 77
Query: 115 LPFYPRSKISLISVGNDIF---DTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXX 171
F+ + I+VGN+I T L+ F+LPA+RN+H A+ G++
Sbjct: 78 RGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDL 137
Query: 172 XXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFAL 230
PPS+ F++ S + P+++FL S L N+YPY Y N +I L +AL
Sbjct: 138 TLVGNSYPPSAGAFRDDVRSY-LNPIIRFLSSIRSPLLANIYPYFTYAGNPRDISLPYAL 196
Query: 231 FENYPFNFRDDLITGVR-YTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASE 289
F + D G R Y NLFD +DA+ SA+ A ++ V+V+E+GWPS+GA A+
Sbjct: 197 FTSPSVVVWD----GQRGYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAAT 252
Query: 290 VDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVKG---ERSWGILHQN 346
D YL L+ H+K G+P R + E Y++ + D K E+ +G+ N
Sbjct: 253 FDN----GRTYLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKKQPEVEKHFGLFFPN 306
Query: 347 FTQKYEIEFS 356
QKY + FS
Sbjct: 307 KWQKYNLNFS 316
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 150/305 (49%), Gaps = 20/305 (6%)
Query: 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHV 114
V S+ S I ++RL + + ++A T +++ PN + LAA+ A W+ ++
Sbjct: 18 VVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNI 77
Query: 115 LPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXX 174
YP+ + VGN++ + L+PA++NVH AL G+ I V
Sbjct: 78 QA-YPKVSFRYVCVGNEV---AGGATRNLVPAMKNVHGALVAAGLGHIKVTTSVSQAILG 133
Query: 175 XXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFEN 233
PPS+ F A + M P++QFL TN+ + N+YPY + N + +G+ALF
Sbjct: 134 VFS-PPSAGSFTGEAAAF-MGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNA 191
Query: 234 YPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASEVDAT 293
RD Y NLFD VDA +AM G ++ ++V+E+GWPS G A AT
Sbjct: 192 SGTVVRDGAYG---YQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGGTA----AT 244
Query: 294 PALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVKG---ERSWGILHQNFTQK 350
PA A Y + L+ H+ G G+P R G E Y++ + + K E++WG+ + N
Sbjct: 245 PANARFYNQHLINHV--GRGTP-RHPGAIETYIFAMFNENQKDSGVEQNWGLFYPNMQHV 301
Query: 351 YEIEF 355
Y I F
Sbjct: 302 YPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 155/306 (50%), Gaps = 22/306 (7%)
Query: 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHV 114
V + S I +R+ +D + A + ++L I N + +AA+ + A W+ +V
Sbjct: 18 VVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNV 77
Query: 115 LPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXX 174
P+YP I I+ GN++ + +LPA+RN++ AL G+ I V
Sbjct: 78 RPYYPAVNIKYIAAGNEV---QGGATQSILPAMRNLNAALSAAGLGAIKVSTSIRFDEVA 134
Query: 175 XXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFEN 233
PPS+ F+ + M + + L T + L NVYPY YR N I L +A F+
Sbjct: 135 NSF-PPSAGVFK----NAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQ- 188
Query: 234 YPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASEVDAT 293
P D G+ YT+LFD MVDAV +A+ AG + V+V+E+GWPS+G A A+
Sbjct: 189 -PGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGGFA----AS 243
Query: 294 PALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVK----GERSWGILHQNFTQ 349
A Y +GL+ H+ G G+P +RE + E Y++ + + K ERS+G+ + + +
Sbjct: 244 AGNARTYNQGLINHV--GGGTPKKREAL-ETYIFAMFNENQKTGDATERSFGLFNPDKSP 300
Query: 350 KYEIEF 355
Y I+F
Sbjct: 301 AYNIQF 306
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 151/309 (48%), Gaps = 20/309 (6%)
Query: 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHV 114
V + + NI +R+ ++ A +N I+L +PN + LA N + A W+ ++
Sbjct: 20 VIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGWVQDNI 78
Query: 115 LPFYPRSKISLISVGNDI--FDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXX 172
+P K I+VGN++ + + F+ PA+ N++ AL G++
Sbjct: 79 RNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSG 138
Query: 173 XXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCE-IPLGFALF 231
PP + F+E S I P++ FL N L N+YPY + N +PL +ALF
Sbjct: 139 LLTNTYPPRDSIFREEYKSFI-NPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSYALF 197
Query: 232 ENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASEVD 291
R+D TG Y NLFD +VD++ A G +NI +IV+E+GWPS G A
Sbjct: 198 NQ---QRRND--TG--YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPA---- 246
Query: 292 ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVKG---ERSWGILHQNF 347
AT A Y L+ H+K G G+P + E Y++ + D E KG E+ +G+ + +
Sbjct: 247 ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQ 306
Query: 348 TQKYEIEFS 356
KY++ F+
Sbjct: 307 RPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 20/309 (6%)
Query: 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHV 114
V + + NI +R+ ++ A +N I+L +PN + LA N + A W+ ++
Sbjct: 20 VIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGWVQDNI 78
Query: 115 LPFYPRSKISLISVGNDI--FDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXX 172
+P K I+VGN++ + + F+ PA+ N++ AL G++
Sbjct: 79 RNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSG 138
Query: 173 XXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCE-IPLGFALF 231
PP + F+E S I P++ FL N L N+YPY + N +PL +ALF
Sbjct: 139 LLTNTYPPRDSIFREEYKSFI-NPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSYALF 197
Query: 232 ENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADASEVD 291
R+D TG Y NLFD +VD++ A G +NI +IV+ +GWPS G A
Sbjct: 198 NQ---QRRND--TG--YQNLFDALVDSMYFATEKLGGQNIEIIVSASGWPSEGHPA---- 246
Query: 292 ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVKG---ERSWGILHQNF 347
AT A Y L+ H+K G G+P + E Y++ + D E KG E+ +G+ + +
Sbjct: 247 ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQ 306
Query: 348 TQKYEIEFS 356
KY++ F+
Sbjct: 307 RPKYQLNFN 315
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 291 DATP-ALAEMYLKGLVAHL----------KSGMGSPLRREGVAEAYVYELVDIEVKGERS 339
D TP E YL G+ A + SG S LR++GV VYE+ D+ V+G+R
Sbjct: 79 DLTPEGFVERYLSGVSAVVVGRDFRFGKNASGNASFLRKKGVE---VYEIEDVVVQGKRV 135
Query: 340 WGILHQNFTQKYEIE 354
L +N Q+ +E
Sbjct: 136 SSSLIRNLVQEGRVE 150
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 291 DATP-ALAEMYLKGLVAHL----------KSGMGSPLRREGVAEAYVYELVDIEVKGERS 339
D TP E YL G+ A + SG S LR++GV VYE+ D+ V+G+R
Sbjct: 79 DLTPEGFVERYLSGVSAVVVGRDFRFGKNASGNASFLRKKGVE---VYEIEDVVVQGKRV 135
Query: 340 WGILHQNFTQKYEIE 354
L +N Q+ +E
Sbjct: 136 SSSLIRNLVQEGRVE 150
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 203 DTNSSFLVNVYPYNMYRLNCEIPLGFAL-FENYPFNF------------RDDLIT--GVR 247
+ S+F +N+ N + L IPL L + YP F + I G++
Sbjct: 642 EKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETLGLK 701
Query: 248 YTNLFDVMVDAVISAMAVA-GHENIPVIVAETGWPSSGADASEVDATPALAEMYLK 302
Y L +DA+ + +A H N P+ + TG G + E TP L +MY K
Sbjct: 702 YLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPML-QMYSK 756
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,107,365
Number of Sequences: 62578
Number of extensions: 400642
Number of successful extensions: 694
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 10
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)