Query 035682
Match_columns 392
No_of_seqs 163 out of 1281
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.7E-84 1E-88 637.1 20.6 304 28-355 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.9E-48 6.2E-53 366.8 24.2 251 25-347 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 98.9 2.7E-07 5.9E-12 92.5 21.6 237 52-349 26-325 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.8 1.7E-07 3.6E-12 92.5 14.8 139 55-215 58-216 (314)
5 COG3867 Arabinogalactan endo-1 98.0 0.00022 4.7E-09 70.2 15.1 207 52-310 65-328 (403)
6 PF00150 Cellulase: Cellulase 97.9 0.0015 3.3E-08 62.1 19.6 115 51-166 22-172 (281)
7 PRK10150 beta-D-glucuronidase; 97.9 0.0016 3.5E-08 70.2 22.0 235 56-353 319-585 (604)
8 smart00633 Glyco_10 Glycosyl h 97.4 0.021 4.5E-07 55.0 19.1 76 260-350 172-248 (254)
9 PF11790 Glyco_hydro_cc: Glyco 96.8 0.097 2.1E-06 50.2 17.1 163 121-349 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 95.5 0.11 2.4E-06 50.9 10.5 99 27-132 17-132 (298)
11 PF00232 Glyco_hydro_1: Glycos 85.2 0.52 1.1E-05 49.4 2.1 72 268-346 353-430 (455)
12 PRK09936 hypothetical protein; 82.9 6.5 0.00014 39.1 8.5 59 27-94 21-95 (296)
13 TIGR03356 BGL beta-galactosida 82.7 3.9 8.5E-05 42.6 7.4 74 268-348 335-414 (427)
14 PRK09525 lacZ beta-D-galactosi 80.8 16 0.00035 42.4 12.1 100 27-133 352-464 (1027)
15 PF03662 Glyco_hydro_79n: Glyc 80.2 5.5 0.00012 40.2 7.1 82 76-157 114-203 (319)
16 PRK13511 6-phospho-beta-galact 79.0 6.5 0.00014 41.5 7.6 74 268-348 365-446 (469)
17 PLN02998 beta-glucosidase 76.9 5.7 0.00012 42.4 6.5 74 268-348 390-466 (497)
18 PLN02814 beta-glucosidase 75.3 7.3 0.00016 41.6 6.8 73 268-348 385-461 (504)
19 PF02449 Glyco_hydro_42: Beta- 74.2 24 0.00052 35.8 10.0 83 53-135 13-141 (374)
20 PRK10340 ebgA cryptic beta-D-g 69.3 43 0.00093 39.0 11.6 101 27-134 336-452 (1021)
21 PLN02849 beta-glucosidase 68.9 16 0.00035 39.1 7.5 73 268-348 383-461 (503)
22 PF00925 GTP_cyclohydro2: GTP 64.5 7.3 0.00016 35.4 3.4 37 55-91 131-167 (169)
23 smart00481 POLIIIAc DNA polyme 62.5 23 0.0005 26.5 5.4 44 49-92 14-62 (67)
24 cd06418 GH25_BacA-like BacA is 60.3 1.5E+02 0.0033 27.9 11.8 104 54-160 24-143 (212)
25 PF06180 CbiK: Cobalt chelatas 59.2 91 0.002 30.6 10.2 145 46-221 54-211 (262)
26 PRK13347 coproporphyrinogen II 58.0 24 0.00052 37.0 6.4 27 140-166 262-288 (453)
27 KOG0626 Beta-glucosidase, lact 55.0 34 0.00073 36.8 6.8 83 265-353 402-499 (524)
28 cd02875 GH18_chitobiase Chitob 54.4 63 0.0014 32.9 8.5 94 63-159 55-150 (358)
29 TIGR01233 lacG 6-phospho-beta- 53.8 36 0.00079 36.0 6.9 74 268-348 364-444 (467)
30 PRK09589 celA 6-phospho-beta-g 52.4 39 0.00085 35.8 6.9 74 268-348 366-447 (476)
31 COG4782 Uncharacterized protei 49.6 60 0.0013 33.5 7.3 92 265-359 142-274 (377)
32 TIGR00505 ribA GTP cyclohydrol 49.3 25 0.00054 32.6 4.3 33 56-88 131-163 (191)
33 PRK00393 ribA GTP cyclohydrola 49.0 25 0.00054 32.8 4.3 33 56-88 134-166 (197)
34 PRK09593 arb 6-phospho-beta-gl 45.1 45 0.00098 35.4 6.0 74 268-348 367-448 (478)
35 PRK14334 (dimethylallyl)adenos 43.0 2.5E+02 0.0055 29.2 11.1 59 137-215 268-326 (440)
36 PRK15014 6-phospho-beta-glucos 43.0 50 0.0011 35.1 6.0 74 268-348 367-448 (477)
37 PRK07379 coproporphyrinogen II 42.2 66 0.0014 33.2 6.6 107 53-166 115-252 (400)
38 PRK12485 bifunctional 3,4-dihy 41.7 30 0.00064 35.7 3.8 33 55-88 330-362 (369)
39 COG2896 MoaA Molybdenum cofact 41.6 3.9E+02 0.0085 27.1 12.1 43 48-90 41-94 (322)
40 PRK14019 bifunctional 3,4-dihy 38.2 36 0.00079 35.0 3.9 33 56-89 328-360 (367)
41 cd00641 GTP_cyclohydro2 GTP cy 37.9 46 0.001 30.8 4.2 33 56-88 133-165 (193)
42 PRK05628 coproporphyrinogen II 37.0 1.1E+02 0.0025 30.9 7.3 25 141-165 220-244 (375)
43 PRK09852 cryptic 6-phospho-bet 36.6 94 0.002 33.0 6.8 73 268-348 364-444 (474)
44 TIGR03632 bact_S11 30S ribosom 34.9 79 0.0017 26.7 4.8 37 53-89 50-91 (108)
45 PRK09249 coproporphyrinogen II 34.8 2.7E+02 0.0058 29.1 9.8 104 53-165 151-286 (453)
46 PRK09318 bifunctional 3,4-dihy 34.4 52 0.0011 34.1 4.3 38 55-92 319-356 (387)
47 PRK05904 coproporphyrinogen II 34.3 1.7E+02 0.0038 29.6 8.1 106 53-165 103-234 (353)
48 PRK13586 1-(5-phosphoribosyl)- 34.2 3.6E+02 0.0078 25.7 9.8 70 50-135 30-108 (232)
49 cd02874 GH18_CFLE_spore_hydrol 33.6 72 0.0016 31.3 5.1 84 73-159 47-138 (313)
50 PRK09311 bifunctional 3,4-dihy 33.3 55 0.0012 34.1 4.3 34 55-88 338-371 (402)
51 PF00834 Ribul_P_3_epim: Ribul 33.3 3.5E+02 0.0075 25.3 9.3 98 52-165 69-172 (201)
52 PRK08815 GTP cyclohydrolase; P 33.2 56 0.0012 33.8 4.3 37 56-92 305-341 (375)
53 TIGR01125 MiaB-like tRNA modif 33.0 5.3E+02 0.012 26.6 11.6 62 137-218 266-327 (430)
54 PRK08208 coproporphyrinogen II 32.6 1.5E+02 0.0032 30.9 7.4 107 53-166 141-272 (430)
55 PRK09319 bifunctional 3,4-dihy 32.4 57 0.0012 35.4 4.3 95 55-160 342-442 (555)
56 PRK09314 bifunctional 3,4-dihy 32.2 56 0.0012 33.3 4.0 36 53-88 298-334 (339)
57 PF04909 Amidohydro_2: Amidohy 31.9 1.4E+02 0.003 27.7 6.5 55 143-212 83-137 (273)
58 cd06150 YjgF_YER057c_UK114_lik 31.3 71 0.0015 26.2 3.9 29 138-166 26-57 (105)
59 PF15560 Imm8: Immunity protei 31.3 71 0.0015 28.1 3.9 59 123-189 4-69 (133)
60 PLN02831 Bifunctional GTP cycl 31.1 61 0.0013 34.3 4.3 35 55-89 372-406 (450)
61 PRK09058 coproporphyrinogen II 31.0 1.2E+02 0.0026 31.8 6.5 28 139-166 274-301 (449)
62 cd06545 GH18_3CO4_chitinase Th 31.0 89 0.0019 29.8 5.1 81 75-159 50-133 (253)
63 TIGR03628 arch_S11P archaeal r 30.9 97 0.0021 26.7 4.7 37 53-89 53-102 (114)
64 TIGR00538 hemN oxygen-independ 30.6 1.6E+02 0.0034 30.8 7.3 104 53-166 151-287 (455)
65 PF06117 DUF957: Enterobacteri 30.2 85 0.0019 24.3 3.7 42 104-157 11-55 (65)
66 PF05990 DUF900: Alpha/beta hy 30.1 1.5E+02 0.0033 28.1 6.5 43 265-310 44-88 (233)
67 COG1242 Predicted Fe-S oxidore 29.8 1.3E+02 0.0028 30.2 5.9 64 23-99 111-200 (312)
68 PF14488 DUF4434: Domain of un 29.2 4.3E+02 0.0093 23.9 9.5 78 75-157 69-151 (166)
69 PF02811 PHP: PHP domain; Int 28.9 1.1E+02 0.0024 26.4 5.0 47 47-93 13-64 (175)
70 COG1509 KamA Lysine 2,3-aminom 28.6 3.4E+02 0.0074 28.1 8.8 100 46-159 167-281 (369)
71 PF08002 DUF1697: Protein of u 28.4 40 0.00086 29.6 2.0 27 46-72 15-41 (137)
72 PRK06294 coproporphyrinogen II 28.3 1.8E+02 0.0038 29.7 7.0 106 53-166 103-240 (370)
73 PF02055 Glyco_hydro_30: O-Gly 28.0 5.6E+02 0.012 27.5 10.9 56 110-165 210-277 (496)
74 PRK05723 flavodoxin; Provision 27.5 4.4E+02 0.0094 23.3 10.1 115 27-161 2-119 (151)
75 PRK09607 rps11p 30S ribosomal 27.0 1.2E+02 0.0026 26.8 4.8 37 53-89 60-109 (132)
76 TIGR01579 MiaB-like-C MiaB-lik 26.9 6.9E+02 0.015 25.6 11.2 138 49-217 166-329 (414)
77 PRK13587 1-(5-phosphoribosyl)- 26.6 5.6E+02 0.012 24.3 10.2 70 50-135 31-111 (234)
78 PF00411 Ribosomal_S11: Riboso 26.6 1.1E+02 0.0023 25.9 4.3 36 54-89 51-91 (110)
79 cd01543 PBP1_XylR Ligand-bindi 26.6 3.7E+02 0.008 24.8 8.4 98 52-169 97-208 (265)
80 PRK14114 1-(5-phosphoribosyl)- 26.0 4.1E+02 0.0089 25.5 8.7 70 50-135 30-108 (241)
81 PRK13361 molybdenum cofactor b 26.0 6.6E+02 0.014 24.9 12.9 41 49-89 44-96 (329)
82 CHL00041 rps11 ribosomal prote 25.8 1.4E+02 0.003 25.6 4.9 37 53-89 63-104 (116)
83 PF14871 GHL6: Hypothetical gl 25.5 1.5E+02 0.0033 25.9 5.1 42 51-92 1-65 (132)
84 COG1433 Uncharacterized conser 25.3 2.2E+02 0.0049 24.7 6.0 40 53-92 55-94 (121)
85 PHA02754 hypothetical protein; 25.2 65 0.0014 24.6 2.3 26 142-167 15-42 (67)
86 PF13756 Stimulus_sens_1: Stim 24.6 92 0.002 26.4 3.5 26 51-76 2-30 (112)
87 PRK09004 FMN-binding protein M 23.8 4.9E+02 0.011 22.7 9.5 114 27-161 3-116 (146)
88 COG0807 RibA GTP cyclohydrolas 23.5 1.1E+02 0.0025 28.7 4.2 39 56-94 133-171 (193)
89 cd00598 GH18_chitinase-like Th 23.4 1.2E+02 0.0026 27.4 4.3 84 75-159 53-142 (210)
90 PRK05309 30S ribosomal protein 23.0 1.7E+02 0.0037 25.6 4.9 37 53-89 67-108 (128)
91 COG3325 ChiA Chitinase [Carboh 22.8 3.3E+02 0.0072 28.8 7.7 120 75-215 115-251 (441)
92 PRK08446 coproporphyrinogen II 22.7 2E+02 0.0044 28.9 6.2 53 53-105 98-173 (350)
93 cd04743 NPD_PKS 2-Nitropropane 22.7 5.9E+02 0.013 25.8 9.4 64 52-132 71-134 (320)
94 cd03412 CbiK_N Anaerobic cobal 22.3 2.8E+02 0.006 23.8 6.1 48 46-93 52-109 (127)
95 PRK07198 hypothetical protein; 22.1 77 0.0017 33.1 2.9 38 55-92 337-375 (418)
96 COG0635 HemN Coproporphyrinoge 21.9 2.7E+02 0.0058 29.1 7.0 105 53-165 137-272 (416)
97 TIGR02666 moaA molybdenum cofa 21.5 7.9E+02 0.017 24.2 12.2 42 48-89 41-94 (334)
98 cd00854 NagA N-acetylglucosami 21.4 1.3E+02 0.0029 30.4 4.6 44 49-93 145-194 (374)
99 COG2159 Predicted metal-depend 21.4 5.5E+02 0.012 25.3 8.8 54 145-214 113-166 (293)
100 PHA01735 hypothetical protein 21.3 70 0.0015 25.3 1.9 26 101-134 33-58 (76)
101 TIGR03820 lys_2_3_AblA lysine- 21.3 4.4E+02 0.0096 27.7 8.4 32 125-159 245-277 (417)
102 PF01055 Glyco_hydro_31: Glyco 20.9 3.9E+02 0.0085 27.5 8.0 89 195-329 86-178 (441)
103 PF13721 SecD-TM1: SecD export 20.9 3.3E+02 0.0071 22.6 6.1 35 25-69 31-65 (101)
104 PRK08599 coproporphyrinogen II 20.8 4.7E+02 0.01 26.4 8.5 26 141-166 212-237 (377)
105 PRK05799 coproporphyrinogen II 20.7 3.2E+02 0.0069 27.6 7.2 107 53-166 99-236 (374)
106 PF04202 Mfp-3: Foot protein 3 20.7 1.1E+02 0.0025 23.8 2.9 30 6-35 5-35 (71)
107 TIGR03822 AblA_like_2 lysine-2 20.5 6.1E+02 0.013 25.3 9.0 38 56-93 159-206 (321)
108 PF14587 Glyco_hydr_30_2: O-Gl 20.4 5.1E+02 0.011 27.0 8.5 99 75-174 108-233 (384)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.7e-84 Score=637.13 Aligned_cols=304 Identities=42% Similarity=0.761 Sum_probs=247.8
Q ss_pred eeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCCChhhHhhhHHHHH
Q 035682 28 IGVTYAPPILAPTIANPHPPPPPPPDRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQ 107 (392)
Q Consensus 28 ~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~ 107 (392)
|||||| +.|+|+|+|.++++++|+++|++||||++|+++|+|++++||+|++||+|++++.+++++..|.
T Consensus 1 iGvnyG----------~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~ 70 (310)
T PF00332_consen 1 IGVNYG----------RVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAG 70 (310)
T ss_dssp EEEEE-------------SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHH
T ss_pred CeEecc----------CccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHh
Confidence 799999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCC-ceeeecccccceeecccCCCCCCccc
Q 035682 108 RWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIK-KIPVSTTFSFFNIITTSFPPSSAQFQ 186 (392)
Q Consensus 108 ~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~-~I~VsT~~s~~~vl~~s~pPS~g~f~ 186 (392)
.|+++||.+|+|.++|++|+||||++...... .|+|+|+++|++|+++||+ +|||+|+++ ++++.++||||+|.|+
T Consensus 71 ~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~-~~vl~~s~PPS~g~F~ 147 (310)
T PF00332_consen 71 SWVRTNVLPYLPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHS-MDVLSNSFPPSAGVFR 147 (310)
T ss_dssp HHHHHHTCTCTTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEE-GGGEEE-SSGGG-EES
T ss_pred hhhhhcccccCcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccc-cccccccCCCccCccc
Confidence 99999999999999999999999999874333 8999999999999999998 699999999 9999999999999999
Q ss_pred ccchhhhhHHHHHHHhhcCCcceeeccCCcccccC-CCCCccccccccCCCccccCCCCCcccchhHHHHHHHHHHHHHH
Q 035682 187 EPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAV 265 (392)
Q Consensus 187 ~~~~~~~~~~~ldFL~~~~s~~~vNiyPyf~~~~~-~~i~l~yA~f~~~~~~~~dd~~~~~~Y~nlfda~vdav~~a~~~ 265 (392)
+++.+.| +++++||..++||||+|+||||++..+ ..++|+||+|+++...+ | ++.+|+||||+|+|++++||++
T Consensus 148 ~~~~~~~-~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D---~~~~y~nlfDa~~da~~~a~~~ 222 (310)
T PF00332_consen 148 SDIASVM-DPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-D---GGLAYTNLFDAMVDAVYAAMEK 222 (310)
T ss_dssp HHHHHHH-HHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-E---TTEEESSHHHHHHHHHHHHHHT
T ss_pred ccchhhh-hHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-c---cchhhhHHHHHHHHHHHHHHHH
Confidence 9988777 999999999999999999999999988 89999999999876544 4 4888999999999999999999
Q ss_pred hCCCCccEEEeeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCCCCC-C---CcceE
Q 035682 266 AGHENIPVIVAETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVK-G---ERSWG 341 (392)
Q Consensus 266 ~g~~~~~VvVtETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe~wK-G---E~~wG 341 (392)
+|+++++|+||||||||+|+ ..|+++||++|++++++++. .|||+||+.++++||||+|||+|| | |||||
T Consensus 223 ~g~~~~~vvv~ETGWPs~G~----~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wG 296 (310)
T PF00332_consen 223 LGFPNVPVVVGETGWPSAGD----PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWG 296 (310)
T ss_dssp TT-TT--EEEEEE---SSSS----TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--
T ss_pred hCCCCceeEEeccccccCCC----CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceee
Confidence 99999999999999999996 57899999999999999996 799999999999999999999999 4 99999
Q ss_pred eeecCCceeEEEee
Q 035682 342 ILHQNFTQKYEIEF 355 (392)
Q Consensus 342 lf~~d~~~ky~l~~ 355 (392)
||++||+|||+|+|
T Consensus 297 lf~~d~~~ky~~~f 310 (310)
T PF00332_consen 297 LFYPDGTPKYDLDF 310 (310)
T ss_dssp SB-TTSSBSS----
T ss_pred eECCCCCeecCCCC
Confidence 99999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=366.77 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=201.1
Q ss_pred CCeeeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHc-CC-CCeEEeecCCh----HHHHHHhcCCceEEEcCCCCChhh
Q 035682 25 RPLIGVTYAPPILAPTIANPHPPPPPPPDRVASIVTS-LN-IPAVRLPNSDP----SLIRAFAYTNTTILLSIPNAFVPT 98 (392)
Q Consensus 25 ~~~~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks-~~-i~~VRlY~~d~----~vL~A~~~tgikV~lGV~n~~l~~ 98 (392)
-+..+|||| ||+ ....||+.+++..+|.. .. ...||+|++|| +|++|+...|+||.+|||..+-.+
T Consensus 43 ~g~~~f~l~-~~n-------~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~ 114 (305)
T COG5309 43 SGFLAFTLG-PYN-------DDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH 114 (305)
T ss_pred ccccceecc-ccC-------CCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh
Confidence 467899999 884 44458999999776643 22 34999999997 688999999999999999754222
Q ss_pred HhhhHHHHHHHHHhhccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccC
Q 035682 99 LAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSF 178 (392)
Q Consensus 99 la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~ 178 (392)
-+ .+.-+...++++...+.|++|+||||+|+|++.++++|+.+|..||++|+.+|++ +||+|+++ |.++.+
T Consensus 115 ~~-----~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~-gpV~T~ds-w~~~~~-- 185 (305)
T COG5309 115 DA-----VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD-GPVTTVDS-WNVVIN-- 185 (305)
T ss_pred hh-----HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC-Cceeeccc-ceeeeC--
Confidence 21 1223556678888888999999999999999999999999999999999999996 88999999 988864
Q ss_pred CCCCCcccccchhhhhHHHHHHHhhcCCcceeeccCCcccccCCCCCccccccccCCCccccCCCCCcccchhHHHHHHH
Q 035682 179 PPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFRDDLITGVRYTNLFDVMVDA 258 (392)
Q Consensus 179 pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPyf~~~~~~~i~l~yA~f~~~~~~~~dd~~~~~~Y~nlfda~vda 258 (392)
+ +.+ +...||+ |+|.||||+.+.. .++ . + .++-.|++-
T Consensus 186 -------n----p~l-~~~SDfi-------a~N~~aYwd~~~~-----------------a~~--~---~-~f~~~q~e~ 223 (305)
T COG5309 186 -------N----PEL-CQASDFI-------AANAHAYWDGQTV-----------------ANA--A---G-TFLLEQLER 223 (305)
T ss_pred -------C----hHH-hhhhhhh-------hcccchhccccch-----------------hhh--h---h-HHHHHHHHH
Confidence 1 233 5555655 8999999986421 111 1 1 355566777
Q ss_pred HHHHHHHhCCCCccEEEeeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCCCCC--C
Q 035682 259 VISAMAVAGHENIPVIVAETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVK--G 336 (392)
Q Consensus 259 v~~a~~~~g~~~~~VvVtETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe~wK--G 336 (392)
++++ +..+|+|||+||||||+|..++++.||++||+.|+++++|.+++ .+.++|+||+|||+|| |
T Consensus 224 vqsa----~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~ 290 (305)
T COG5309 224 VQSA----CGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADG 290 (305)
T ss_pred HHHh----cCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCcc
Confidence 6655 23449999999999999999999999999999999999999864 5789999999999999 3
Q ss_pred ----CcceEeeecCC
Q 035682 337 ----ERSWGILHQNF 347 (392)
Q Consensus 337 ----E~~wGlf~~d~ 347 (392)
|+|||+++.|+
T Consensus 291 ~y~VEkywGv~~s~~ 305 (305)
T COG5309 291 SYGVEKYWGVLSSDR 305 (305)
T ss_pred ccchhhceeeeccCC
Confidence 99999999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.89 E-value=2.7e-07 Score=92.49 Aligned_cols=237 Identities=19% Similarity=0.221 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCCCeEEe--ecC-------C-h---HHHHHHhcCCceEEEcCCCC------------------ChhhHh
Q 035682 52 PDRVASIVTSLNIPAVRL--PNS-------D-P---SLIRAFAYTNTTILLSIPNA------------------FVPTLA 100 (392)
Q Consensus 52 ~~~v~~llks~~i~~VRl--Y~~-------d-~---~vL~A~~~tgikV~lGV~n~------------------~l~~la 100 (392)
..+++++||..|++.||+ +-- | . ...+.+++.|++|+|-.--+ +..+++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999886554 421 1 1 34467778999999987311 223332
Q ss_pred hhHHHHHHHHHhhcccc-CCCCcEEEEEecccccCC------CCCChhHHHHHHHHHHHHHHhcCCCceeeeccccccee
Q 035682 101 ANRTLAQRWLYRHVLPF-YPRSKISLISVGNDIFDT------TPDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNI 173 (392)
Q Consensus 101 ~~~~~A~~Wv~~nI~~~-~p~~~I~~I~VGNEvL~~------~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~v 173 (392)
+ +..+..++-+... .-+..++.|-||||.-.. .....+.+...++...+++++.+- ++||-.-
T Consensus 106 ~---~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p-~~kV~lH------ 175 (332)
T PF07745_consen 106 K---AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP-NIKVMLH------ 175 (332)
T ss_dssp H---HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS-TSEEEEE------
T ss_pred H---HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC-CCcEEEE------
Confidence 2 2222222222111 024678999999997543 234567888888888888887543 3444221
Q ss_pred ecccCCCCCCcccccchhhhhHHHHHHHhhcC---CcceeeccCCcccccCCCCCccccccccCCCccccCCCCCcccch
Q 035682 174 ITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTN---SSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFRDDLITGVRYTN 250 (392)
Q Consensus 174 l~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~---s~~~vNiyPyf~~~~~~~i~l~yA~f~~~~~~~~dd~~~~~~Y~n 250 (392)
+.+ | + + .+.+ +-..+-|...+ |.++++.||||... . +
T Consensus 176 ~~~--~---~----~-~~~~-~~~f~~l~~~g~d~DviGlSyYP~w~~~------------------l-----------~ 215 (332)
T PF07745_consen 176 LAN--G---G----D-NDLY-RWFFDNLKAAGVDFDVIGLSYYPFWHGT------------------L-----------E 215 (332)
T ss_dssp ES---T---T----S-HHHH-HHHHHHHHHTTGG-SEEEEEE-STTST-------------------H-----------H
T ss_pred ECC--C---C----c-hHHH-HHHHHHHHhcCCCcceEEEecCCCCcch------------------H-----------H
Confidence 111 0 0 0 1111 33445555544 78899999998641 0 1
Q ss_pred hHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 035682 251 LFDVMVDAVISAMAVAGHENIPVIVAETGWPSSGADAS-------------EVDATPALAEMYLKGLVAHLKSGMGSPLR 317 (392)
Q Consensus 251 lfda~vdav~~a~~~~g~~~~~VvVtETGWPS~G~~~~-------------~~~aS~~na~~y~~~li~~~~~~~Gtp~r 317 (392)
-+...++.+. ++ | +|+|+|.|||||..-.+.+ +..+|++.|+.|++++++.+.+-.+
T Consensus 216 ~l~~~l~~l~---~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~---- 285 (332)
T PF07745_consen 216 DLKNNLNDLA---SR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN---- 285 (332)
T ss_dssp HHHHHHHHHH---HH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHH---HH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc----
Confidence 1222333322 22 3 5899999999999832221 1236899999999999999875211
Q ss_pred CCccccEEEEEe-eCCC---CC-C-Ccce---EeeecCCce
Q 035682 318 REGVAEAYVYEL-VDIE---VK-G-ERSW---GILHQNFTQ 349 (392)
Q Consensus 318 p~~~~~~y~Fe~-FDe~---wK-G-E~~w---Glf~~d~~~ 349 (392)
+.++-+|+-|. .-.. |+ + ..+| +||+.+|++
T Consensus 286 -~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~ 325 (332)
T PF07745_consen 286 -GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNA 325 (332)
T ss_dssp -TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB
T ss_pred -CCeEEEEeeccccccCCcccccCCCCCccccccCCCCCCC
Confidence 13455666552 2221 12 2 3333 789888875
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.77 E-value=1.7e-07 Score=92.54 Aligned_cols=139 Identities=18% Similarity=0.324 Sum_probs=79.6
Q ss_pred HHHHHHcCCCCeEEeecCCh-----HHHHHHhcCCceEEEcCCCC--ChhhHhh------hHHHHHHHHHhhccccCCCC
Q 035682 55 VASIVTSLNIPAVRLPNSDP-----SLIRAFAYTNTTILLSIPNA--FVPTLAA------NRTLAQRWLYRHVLPFYPRS 121 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~-----~vL~A~~~tgikV~lGV~n~--~l~~la~------~~~~A~~Wv~~nI~~~~p~~ 121 (392)
.+.+||..|++.||+|..|+ +-++++++.||=|++.|... .+.+... ..-..-.-+.++...| +
T Consensus 58 Di~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y---~ 134 (314)
T PF03198_consen 58 DIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY---D 134 (314)
T ss_dssp HHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TTS------HHHHHHHHHHHHHHTT----T
T ss_pred hHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCCCCcCCCCHHHHHHHHHHHHHhccC---C
Confidence 36688999999999999875 57899999999999999643 2222111 1111111233334444 6
Q ss_pred cEEEEEecccccCCC--CCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHHH
Q 035682 122 KISLISVGNDIFDTT--PDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQ 199 (392)
Q Consensus 122 ~I~~I~VGNEvL~~~--~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ld 199 (392)
++-+..+||||+... ...++.+-.++|.+|+-+++.|+..|+|+-+-+ ++ ..+| .++.+
T Consensus 135 N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaa--D~---------~~~r--------~~~a~ 195 (314)
T PF03198_consen 135 NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAA--DD---------AEIR--------QDLAN 195 (314)
T ss_dssp TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE--------------TTTH--------HHHHH
T ss_pred ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEcc--CC---------hhHH--------HHHHH
Confidence 899999999999874 234678888999999999999998899986543 11 1222 23445
Q ss_pred HHh-----hcCCcceeeccCC
Q 035682 200 FLE-----DTNSSFLVNVYPY 215 (392)
Q Consensus 200 FL~-----~~~s~~~vNiyPy 215 (392)
++. ..-|.+++|.|-|
T Consensus 196 Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 196 YLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp HTTBTT-----S-EEEEE---
T ss_pred HhcCCCcccccceeeecccee
Confidence 553 3447789998865
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00022 Score=70.17 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCCCeEEe--e----cCC--------h------HHHHHHhcCCceEEEcCCCCC-hhhHhhhHHHHHHHH
Q 035682 52 PDRVASIVTSLNIPAVRL--P----NSD--------P------SLIRAFAYTNTTILLSIPNAF-VPTLAANRTLAQRWL 110 (392)
Q Consensus 52 ~~~v~~llks~~i~~VRl--Y----~~d--------~------~vL~A~~~tgikV~lGV~n~~-l~~la~~~~~A~~Wv 110 (392)
++++++.||.+|+..||+ | |.| + ++-+.+++.|+||++-.--+| -..=+.+ ..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~ 143 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWE 143 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhh
Confidence 577899999999886555 4 333 1 344566789999999874221 0000000 0001121
Q ss_pred H-------hhcccc--------C-CCCcEEEEEecccccCC----CCC--ChhHHHHHHHHHHHHHHhcCCCceeeeccc
Q 035682 111 Y-------RHVLPF--------Y-PRSKISLISVGNDIFDT----TPD--LSPFLLPAVRNVHLALHDLGIKKIPVSTTF 168 (392)
Q Consensus 111 ~-------~nI~~~--------~-p~~~I~~I~VGNEvL~~----~~~--~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~ 168 (392)
. ..|-.| . -+..+..|=||||.-.. .+. ..+.+...++.-.++++...= .|+|---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p-~ikv~lH- 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP-TIKVALH- 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC-CceEEEE-
Confidence 1 111111 0 13567889999998543 111 345666666666666665422 3555322
Q ss_pred ccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeeccCCcccccCCCCCccccccccCCCccccCCCCCccc
Q 035682 169 SFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFRDDLITGVRY 248 (392)
Q Consensus 169 s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPyf~~~~~~~i~l~yA~f~~~~~~~~dd~~~~~~Y 248 (392)
+.+ |-..+.|+- +.+.+.+.-+|| |.+.+--||||..+-+ ++
T Consensus 222 -----la~--g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~-----------------------nL-- 263 (403)
T COG3867 222 -----LAE--GENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN-----------------------NL-- 263 (403)
T ss_pred -----ecC--CCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH-----------------------HH--
Confidence 222 222233321 112222222332 5678899999975311 11
Q ss_pred chhHHHHHHHHHHHHHHhCCCCccEEEeeecc--------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 035682 249 TNLFDVMVDAVISAMAVAGHENIPVIVAETGW--------------PSSGADASEVDATPALAEMYLKGLVAHLKS 310 (392)
Q Consensus 249 ~nlfda~vdav~~a~~~~g~~~~~VvVtETGW--------------PS~G~~~~~~~aS~~na~~y~~~li~~~~~ 310 (392)
++.++++-+. | +|+|+|.||+. |+.+ ..++...+++.|++|.+++|..+.+
T Consensus 264 ~~nl~dia~r---------Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~-~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 264 TTNLNDIASR---------Y-HKDVMVVETAYTYTLEDGDGHENTFPSSE-QTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred HhHHHHHHHH---------h-cCeEEEEEecceeeeccCCCCCCcCCccc-ccCCCceEEechhhHHHHHHHHHHh
Confidence 1122222221 2 58999999998 8877 4555568899999999999999974
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.92 E-value=0.0015 Score=62.13 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=74.9
Q ss_pred CHHHHHHHHHcCCCCeEEeecC-------------C-------hHHHHHHhcCCceEEEcCCCC-----ChhhHhhhHHH
Q 035682 51 PPDRVASIVTSLNIPAVRLPNS-------------D-------PSLIRAFAYTNTTILLSIPNA-----FVPTLAANRTL 105 (392)
Q Consensus 51 s~~~v~~llks~~i~~VRlY~~-------------d-------~~vL~A~~~tgikV~lGV~n~-----~l~~la~~~~~ 105 (392)
..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|-+... .-... .....
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~-~~~~~ 100 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGY-GNNDT 100 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTT-TTHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc-ccchh
Confidence 6788899999999999999721 1 157889999999999987542 00111 11111
Q ss_pred HHHHHHh---hcc-ccCCCCcEEEEEecccccCCCCC------ChhHHHHHHHHHHHHHHhcCCCc-eeeec
Q 035682 106 AQRWLYR---HVL-PFYPRSKISLISVGNDIFDTTPD------LSPFLLPAVRNVHLALHDLGIKK-IPVST 166 (392)
Q Consensus 106 A~~Wv~~---nI~-~~~p~~~I~~I~VGNEvL~~~~~------~~~~Lv~am~nvr~aL~~~Gl~~-I~VsT 166 (392)
...|+++ .+. .|.....|.++=+.||+...... ....+.+.++++.+++++.+-+. |-|+.
T Consensus 101 ~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 101 AQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 2222222 222 23233568899999999886432 23678899999999999998763 44443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.91 E-value=0.0016 Score=70.23 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=128.1
Q ss_pred HHHHHcCCCCeEEee--cCChHHHHHHhcCCceEEEcCCCC---------------ChhhHh------hhHHHHHHHHHh
Q 035682 56 ASIVTSLNIPAVRLP--NSDPSLIRAFAYTNTTILLSIPNA---------------FVPTLA------ANRTLAQRWLYR 112 (392)
Q Consensus 56 ~~llks~~i~~VRlY--~~d~~vL~A~~~tgikV~lGV~n~---------------~l~~la------~~~~~A~~Wv~~ 112 (392)
++++|..|++.||+- -.++..+.+|...||-|+.=+|.. +-.... +..+....-++.
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 667899999999993 336789999999999988544321 000010 011122233455
Q ss_pred hccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhh
Q 035682 113 HVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSL 192 (392)
Q Consensus 113 nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~ 192 (392)
.|..+.....|..-++|||.-... ...-..++.+.+.+++..= .-+|+.... + . .+|... .
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~Dp-tR~vt~~~~-~---~--~~~~~~----~---- 459 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDP-TRPVTCVNV-M---F--ATPDTD----T---- 459 (604)
T ss_pred HHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCC-CCceEEEec-c---c--CCcccc----c----
Confidence 555554445788999999964321 2233444555555555432 233443321 1 0 011000 0
Q ss_pred hhHHHHHHHhhcCCcceeeccCCcccccC-CCCCccccccccCCCccccCCCCCcccchhHHHHHHHHHHHHHHhCCCCc
Q 035682 193 IMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENI 271 (392)
Q Consensus 193 ~~~~~ldFL~~~~s~~~vNiyPyf~~~~~-~~i~l~yA~f~~~~~~~~dd~~~~~~Y~nlfda~vdav~~a~~~~g~~~~ 271 (392)
+ .+++|+ +..|.|+=| ..+ .+. ......++..++.. .+ .+ ++
T Consensus 460 ~-~~~~Dv-------~~~N~Y~~w--y~~~~~~---------------------~~~~~~~~~~~~~~----~~-~~-~k 502 (604)
T PRK10150 460 V-SDLVDV-------LCLNRYYGW--YVDSGDL---------------------ETAEKVLEKELLAW----QE-KL-HK 502 (604)
T ss_pred c-cCcccE-------EEEccccee--cCCCCCH---------------------HHHHHHHHHHHHHH----HH-hc-CC
Confidence 1 223443 367876421 111 000 00011222233221 11 13 79
Q ss_pred cEEEeeeccCCCCC--CCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCCCCC-C-----CcceEee
Q 035682 272 PVIVAETGWPSSGA--DASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVK-G-----ERSWGIL 343 (392)
Q Consensus 272 ~VvVtETGWPS~G~--~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe~wK-G-----E~~wGlf 343 (392)
|++++|.|+.+.-+ ......-|.+.|..|++...+.+.+ +| .-.-.|+..+||-... | .-+.||+
T Consensus 503 P~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p-~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 503 PIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VP-AVVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred CEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CC-ceEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 99999999765321 0111234688999998888776653 33 3456899999995544 2 4578999
Q ss_pred ecCCceeEEE
Q 035682 344 HQNFTQKYEI 353 (392)
Q Consensus 344 ~~d~~~ky~l 353 (392)
+.||+||-..
T Consensus 576 ~~dr~~k~~~ 585 (604)
T PRK10150 576 TRDRQPKSAA 585 (604)
T ss_pred cCCCCChHHH
Confidence 9999998543
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.40 E-value=0.021 Score=55.03 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCccEEEeeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCCCCc
Q 035682 260 ISAMAVAGHENIPVIVAETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVKGER 338 (392)
Q Consensus 260 ~~a~~~~g~~~~~VvVtETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wKGE~ 338 (392)
...|++.+--+++|+|||.+-|..+ +.+.|+.+++++++.+.+. |. ..-.++..+.|. .|..+.
T Consensus 172 ~~~l~~~~~~g~pi~iTE~dv~~~~--------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~~ 236 (254)
T smart00633 172 RAALDRFASLGLEIQITELDISGYP--------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDGG 236 (254)
T ss_pred HHHHHHHHHcCCceEEEEeecCCCC--------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCCC
Confidence 3344444444799999999998753 3488899999999988752 21 223555555553 244234
Q ss_pred ceEeeecCCcee
Q 035682 339 SWGILHQNFTQK 350 (392)
Q Consensus 339 ~wGlf~~d~~~k 350 (392)
+-|||+.|++||
T Consensus 237 ~~~L~d~~~~~k 248 (254)
T smart00633 237 APLLFDANYQPK 248 (254)
T ss_pred CceeECCCCCCC
Confidence 779999999887
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.79 E-value=0.097 Score=50.17 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=93.4
Q ss_pred CcEEEEEecccccCCC--CCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHH
Q 035682 121 SKISLISVGNDIFDTT--PDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLL 198 (392)
Q Consensus 121 ~~I~~I~VGNEvL~~~--~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~l 198 (392)
..++.|..=||+=... ..++++.+...++..+.|+. .+++++.|.. .+.+.-+|.... - +-
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~---~~~~l~sPa~---~~~~~~~~~g~~-------W----l~ 126 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS---PGVKLGSPAV---AFTNGGTPGGLD-------W----LS 126 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc---CCcEEECCee---cccCCCCCCccH-------H----HH
Confidence 4578888889976553 45677888877777777764 3577776644 111100111111 1 23
Q ss_pred HHHhhc---CCcceeeccCCcccccCCCCCccccccccCCCccccCCCCCcccchhHHHHHHHHHHHHHHhCCCCccEEE
Q 035682 199 QFLEDT---NSSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGHENIPVIV 275 (392)
Q Consensus 199 dFL~~~---~s~~~vNiyPyf~~~~~~~i~l~yA~f~~~~~~~~dd~~~~~~Y~nlfda~vdav~~a~~~~g~~~~~VvV 275 (392)
+|+... +.+=.+++|+| .. + + .-|...|+.++ ++.+ +||||
T Consensus 127 ~F~~~~~~~~~~D~iavH~Y-~~--~----------------~-----------~~~~~~i~~~~---~~~~---kPIWI 170 (239)
T PF11790_consen 127 QFLSACARGCRVDFIAVHWY-GG--D----------------A-----------DDFKDYIDDLH---NRYG---KPIWI 170 (239)
T ss_pred HHHHhcccCCCccEEEEecC-Cc--C----------------H-----------HHHHHHHHHHH---HHhC---CCEEE
Confidence 344331 22223455555 10 0 0 11223344332 2332 99999
Q ss_pred eeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCCCCCC-CcceEeeecCCce
Q 035682 276 AETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIEVKG-ERSWGILHQNFTQ 349 (392)
Q Consensus 276 tETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe~wKG-E~~wGlf~~d~~~ 349 (392)
||.|+...+ ...+.+.++.|++..+..+.+. + .--.++||. |-..+.+ ...-.|++.+|++
T Consensus 171 TEf~~~~~~-----~~~~~~~~~~fl~~~~~~ld~~------~-~VeryawF~-~~~~~~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 171 TEFGCWNGG-----SQGSDEQQASFLRQALPWLDSQ------P-YVERYAWFG-FMNDGSGVNPNSALLDADGSL 232 (239)
T ss_pred EeecccCCC-----CCCCHHHHHHHHHHHHHHHhcC------C-CeeEEEecc-cccccCCCccccccccCCCCc
Confidence 999988733 3578999999999999998642 2 234688888 4334443 6666677777643
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.51 E-value=0.11 Score=50.90 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=55.5
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHH---HHHHHcCCCCeEEeec--CChHHHHHHhcCCceEEEcCCCC-----C-
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRV---ASIVTSLNIPAVRLPN--SDPSLIRAFAYTNTTILLSIPNA-----F- 95 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v---~~llks~~i~~VRlY~--~d~~vL~A~~~tgikV~lGV~n~-----~- 95 (392)
.-|||+. +... ..|. .++.+++ ++++|..|++.||+.. .++..+.+|...||-|+.-++.. .
T Consensus 17 l~Gv~~h-~~~~-----~~g~-a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~ 89 (298)
T PF02836_consen 17 LRGVNRH-QDYP-----GLGR-AMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQD 89 (298)
T ss_dssp EEEEEE--S-BT-----TTBT----HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSS
T ss_pred EEEEeeC-cCcc-----cccc-cCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCcccc
Confidence 4699998 3321 3343 3455554 5567889999999964 45799999999999999776541 0
Q ss_pred hh------hHhhhHHHHHHHHHhhccccCCCCcEEEEEecccc
Q 035682 96 VP------TLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDI 132 (392)
Q Consensus 96 l~------~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEv 132 (392)
.. .-....+.....++..|..+...-.|-.-++|||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 90 FGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 00 00011122333344445444444468899999998
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=85.16 E-value=0.52 Score=49.40 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=39.6
Q ss_pred CCCccEEEeeeccCCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCCC-CC-C-CcceE
Q 035682 268 HENIPVIVAETGWPSSGADASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDIE-VK-G-ERSWG 341 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe~-wK-G-E~~wG 341 (392)
++++||+|||.|++.......+.. --.+--+.+++.+.+.+. .|-+.| -+|..++.|-- |. | .+.||
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V~-----GY~~WSl~Dn~Ew~~Gy~~rfG 425 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNVR-----GYFAWSLLDNFEWAEGYKKRFG 425 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EEE-----EEEEETSB---BGGGGGGSE--
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCee-----eEeeeccccccccccCccCccC
Confidence 778999999999988763111000 112333555666665553 354333 57788888843 55 7 99999
Q ss_pred eeecC
Q 035682 342 ILHQN 346 (392)
Q Consensus 342 lf~~d 346 (392)
|++-|
T Consensus 426 l~~VD 430 (455)
T PF00232_consen 426 LVYVD 430 (455)
T ss_dssp SEEEE
T ss_pred ceEEc
Confidence 99999
No 12
>PRK09936 hypothetical protein; Provisional
Probab=82.92 E-value=6.5 Score=39.12 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=39.0
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHHHH---HHHcCCCCeEEe----e-cCC--------hHHHHHHhcCCceEEEc
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRVAS---IVTSLNIPAVRL----P-NSD--------PSLIRAFAYTNTTILLS 90 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v~~---llks~~i~~VRl----Y-~~d--------~~vL~A~~~tgikV~lG 90 (392)
-.|+=|- |++ ++.+ .++++--+ .++..|++.+=+ | +.| .+.|+++.+.|++|.||
T Consensus 21 ~~g~F~Q-p~n------~d~~--~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 21 MKGIFYQ-PQN------RDSQ--VTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred cccceec-ccc------ccCC--CCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 3567799 774 2222 55666544 455678876543 2 222 26788999999999999
Q ss_pred CCCC
Q 035682 91 IPNA 94 (392)
Q Consensus 91 V~n~ 94 (392)
++-|
T Consensus 92 L~~D 95 (296)
T PRK09936 92 LYAD 95 (296)
T ss_pred ccCC
Confidence 9865
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=82.71 E-value=3.9 Score=42.65 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=44.9
Q ss_pred CCCccEEEeeeccCCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-CcceE
Q 035682 268 HENIPVIVAETGWPSSGADASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERSWG 341 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~wG 341 (392)
+++.||+|||.|+.......++.. -=.+--+.+++.+.+.+. .|-+.| -|+.-++.|- .|. | .+.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~-----GY~~Wsl~Dn~ew~~gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIE--EGVDVR-----GYFVWSLLDNFEWAEGYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHH--CCCCEE-----EEEecccccccchhcccccccc
Confidence 666689999999975431000000 012233444555544443 465444 4777888885 366 7 99999
Q ss_pred eeecCCc
Q 035682 342 ILHQNFT 348 (392)
Q Consensus 342 lf~~d~~ 348 (392)
|++-|++
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9999865
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=80.76 E-value=16 Score=42.43 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=60.5
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHH---HHHHHcCCCCeEEeec--CChHHHHHHhcCCceEEEcCCCCCh-----
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRV---ASIVTSLNIPAVRLPN--SDPSLIRAFAYTNTTILLSIPNAFV----- 96 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v---~~llks~~i~~VRlY~--~d~~vL~A~~~tgikV~lGV~n~~l----- 96 (392)
..|+|+- +++. ..|. ..+++++ ++++|..|++.||+-- .++..++.|...||=|+-=++.+..
T Consensus 352 lrGvn~h-~~~p-----~~G~-a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~ 424 (1027)
T PRK09525 352 IRGVNRH-EHHP-----EHGQ-VMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPM 424 (1027)
T ss_pred EEEeEcc-ccCc-----ccCc-cCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccc
Confidence 4688887 3321 2332 3566655 5567889999999843 3578999999999988866543100
Q ss_pred hhHhhh---HHHHHHHHHhhccccCCCCcEEEEEeccccc
Q 035682 97 PTLAAN---RTLAQRWLYRHVLPFYPRSKISLISVGNDIF 133 (392)
Q Consensus 97 ~~la~~---~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL 133 (392)
..+..+ .++..+-+++.|.+......|..-++|||.-
T Consensus 425 ~~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 425 NRLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 001111 1122223444454444445799999999964
No 15
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=80.19 E-value=5.5 Score=40.15 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred HHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccC-----CCCcEEEEEecccccCC---CCCChhHHHHHH
Q 035682 76 LIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFY-----PRSKISLISVGNDIFDT---TPDLSPFLLPAV 147 (392)
Q Consensus 76 vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~-----p~~~I~~I~VGNEvL~~---~~~~~~~Lv~am 147 (392)
+.+=+..+|++|+.|+.--.-..........-.|=-+|.+..+ .+-+|.+-=.|||.-.. ...++.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 3445567999999999631111111112334567666644331 22368888899996532 235678999999
Q ss_pred HHHHHHHHhc
Q 035682 148 RNVHLALHDL 157 (392)
Q Consensus 148 ~nvr~aL~~~ 157 (392)
.++|+.|++.
T Consensus 194 ~~Lr~il~~i 203 (319)
T PF03662_consen 194 IQLRKILNEI 203 (319)
T ss_dssp ---HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.98 E-value=6.5 Score=41.54 Aligned_cols=74 Identities=15% Similarity=0.308 Sum_probs=46.2
Q ss_pred CCC-ccEEEeeeccCCCCCCC-CCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-Ccc
Q 035682 268 HEN-IPVIVAETGWPSSGADA-SEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERS 339 (392)
Q Consensus 268 ~~~-~~VvVtETGWPS~G~~~-~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~ 339 (392)
+++ .||+|||.|+....... ++.. -=.+--+.+++.+.+.+. .|.+.| -||.-++.|- .|. | ++.
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~DnfEW~~Gy~~R 437 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGANVK-----GYFIWSLMDVFSWSNGYEKR 437 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeecccccccchhcCccCc
Confidence 555 58999999997543100 0010 112334555555555553 466554 4888888885 476 8 999
Q ss_pred eEeeecCCc
Q 035682 340 WGILHQNFT 348 (392)
Q Consensus 340 wGlf~~d~~ 348 (392)
|||++-|.+
T Consensus 438 fGl~~VD~~ 446 (469)
T PRK13511 438 YGLFYVDFE 446 (469)
T ss_pred cceEEECCC
Confidence 999999875
No 17
>PLN02998 beta-glucosidase
Probab=76.94 E-value=5.7 Score=42.38 Aligned_cols=74 Identities=27% Similarity=0.465 Sum_probs=46.5
Q ss_pred CCCccEEEeeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-CcceEeee
Q 035682 268 HENIPVIVAETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERSWGILH 344 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~wGlf~ 344 (392)
+++.+|+|||-|+....+..-.-.-=.+--+.+++.+.+.+. .|.+.| -||.-++.|- .|. | ++.|||++
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V~-----GY~~WSl~DnfEW~~Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDVK-----GYFQWSLMDVFELFGGYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhccccCccceEE
Confidence 656689999999976531000000112344556666666653 465443 4778888883 466 7 99999999
Q ss_pred cCCc
Q 035682 345 QNFT 348 (392)
Q Consensus 345 ~d~~ 348 (392)
-|.+
T Consensus 463 VD~~ 466 (497)
T PLN02998 463 VDFK 466 (497)
T ss_pred ECCC
Confidence 8765
No 18
>PLN02814 beta-glucosidase
Probab=75.26 E-value=7.3 Score=41.65 Aligned_cols=73 Identities=25% Similarity=0.514 Sum_probs=46.0
Q ss_pred CCCccEEEeeeccCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-CcceEee
Q 035682 268 HENIPVIVAETGWPSSGA-DASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERSWGIL 343 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~-~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~wGlf 343 (392)
+++.||+|||-|++...+ .-.. .-=.+--+.+++.+.+.+. .|.|.| -||.-++.|- .|. | ++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D-~~Ri~Yl~~hl~~l~~Ai~--dGv~V~-----GY~~WSllDnfEW~~Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQD-TPRVEFIQAYIGAVLNAIK--NGSDTR-----GYFVWSMIDLYELLGGYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccC-HHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhccccCccceE
Confidence 666689999999975421 0000 0112344555555555553 466554 4778888883 466 8 9999999
Q ss_pred ecCCc
Q 035682 344 HQNFT 348 (392)
Q Consensus 344 ~~d~~ 348 (392)
+-|..
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 99765
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=74.16 E-value=24 Score=35.79 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCCeEEeecC-------C---------hHHHHHHhcCCceEEEcCCCCChh-------------------
Q 035682 53 DRVASIVTSLNIPAVRLPNS-------D---------PSLIRAFAYTNTTILLSIPNAFVP------------------- 97 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY~~-------d---------~~vL~A~~~tgikV~lGV~n~~l~------------------- 97 (392)
++.++++|..|++.|||-.. . -.+|..+++.||+|+|+++....+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 55677888899999997432 1 157888899999999998632100
Q ss_pred -------hHhh----hHHHHHHHHHhhccccCCCCcEEEEEecccccCC
Q 035682 98 -------TLAA----NRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDT 135 (392)
Q Consensus 98 -------~la~----~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~ 135 (392)
.... -.+.+...++.-+..|.....|.++-|.||.-..
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 0000 0233455555444555445579999999997663
No 20
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=69.30 E-value=43 Score=39.03 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=60.3
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHH---HHHHHcCCCCeEEeec--CChHHHHHHhcCCceEEEcCCCCC------
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRV---ASIVTSLNIPAVRLPN--SDPSLIRAFAYTNTTILLSIPNAF------ 95 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v---~~llks~~i~~VRlY~--~d~~vL~A~~~tgikV~lGV~n~~------ 95 (392)
..|+|+- +++. ..|. ..+++++ ++++|+.|++.||+-- .++..+++|...||=|+--++.+.
T Consensus 336 lrGvnrh-~~~p-----~~G~-a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~ 408 (1021)
T PRK10340 336 LHGVNRH-DNDH-----RKGR-AVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANV 408 (1021)
T ss_pred EEEeecC-CCCc-----ccCc-cCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccc
Confidence 4688876 3321 2332 3455554 5677899999999853 356889999999999887542110
Q ss_pred --hhhHhhhH---HHHHHHHHhhccccCCCCcEEEEEecccccC
Q 035682 96 --VPTLAANR---TLAQRWLYRHVLPFYPRSKISLISVGNDIFD 134 (392)
Q Consensus 96 --l~~la~~~---~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~ 134 (392)
...+..++ ++..+-+++.|.+......|..-++|||.-.
T Consensus 409 ~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 409 GDISRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 00111111 1122334445555444457899999999744
No 21
>PLN02849 beta-glucosidase
Probab=68.86 E-value=16 Score=39.08 Aligned_cols=73 Identities=26% Similarity=0.446 Sum_probs=46.2
Q ss_pred CCCccEEEeeeccCCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-CcceE
Q 035682 268 HENIPVIVAETGWPSSGADASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERSWG 341 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~wG 341 (392)
+++.||+|||-|++.... .++.. -=.+--+.+++.+.+.+. .|.+.| -||.-++.|- .|. | ++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~-~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V~-----GY~~WSl~DnfEW~~Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQD-LQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDTR-----GYFVWSFMDLYELLKGYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCC-CCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhccccCccc
Confidence 666689999999986542 11111 112344555555555553 465444 4777888874 355 7 99999
Q ss_pred eeecCCc
Q 035682 342 ILHQNFT 348 (392)
Q Consensus 342 lf~~d~~ 348 (392)
|++-|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9998765
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=64.47 E-value=7.3 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=27.3
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcC
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSI 91 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV 91 (392)
-+|+|+..|+++||+.+.+|.-+.++.+.||+|.=-|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 4888999999999999999999999999999997443
No 23
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=62.51 E-value=23 Score=26.49 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHcCCCCeEEeecCC-----hHHHHHHhcCCceEEEcCC
Q 035682 49 PPPPDRVASIVTSLNIPAVRLPNSD-----PSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 49 lps~~~v~~llks~~i~~VRlY~~d-----~~vL~A~~~tgikV~lGV~ 92 (392)
.-+++++++.++.+|++.|=+=|-+ ....+.+++.|++++.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3568999999999999999887766 3566777789999999985
No 24
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=60.34 E-value=1.5e+02 Score=27.92 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCCeEEeecCC-----------hHHHHHHhcCCceEEEcCCCC-----ChhhHhhhHHHHHHHHHhhcccc
Q 035682 54 RVASIVTSLNIPAVRLPNSD-----------PSLIRAFAYTNTTILLSIPNA-----FVPTLAANRTLAQRWLYRHVLPF 117 (392)
Q Consensus 54 ~v~~llks~~i~~VRlY~~d-----------~~vL~A~~~tgikV~lGV~n~-----~l~~la~~~~~A~~Wv~~nI~~~ 117 (392)
...+.+|+.+++.|=.|=++ +.=++.+.+.|++++. |++. .....+.....|.+-++.+..--
T Consensus 24 ~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A~~lG 102 (212)
T cd06418 24 ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAARALG 102 (212)
T ss_pred HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHHHHcC
Confidence 56677788888877777432 2456788899999865 3321 22233334455555565555444
Q ss_pred CCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 035682 118 YPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIK 160 (392)
Q Consensus 118 ~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~ 160 (392)
.|...+-++.|=.... .......++|+++-+.++|...||.
T Consensus 103 ~p~gs~IYfavD~d~~--~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 103 FPPGTIIYFAVDFDAL--DDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred CCCCCEEEEEeecCCC--cchhHHHHHHHHHHHHHHHHhcCCc
Confidence 5666677888744432 2234579999999999999999884
No 25
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=59.23 E-value=91 Score=30.56 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHHcCCCCeEEeecCC-------hHHHHH---HhcCCceEEEcCCCCCh---hhHhhhHHHHHHHHHh
Q 035682 46 PPPPPPPDRVASIVTSLNIPAVRLPNSD-------PSLIRA---FAYTNTTILLSIPNAFV---PTLAANRTLAQRWLYR 112 (392)
Q Consensus 46 ~~nlps~~~v~~llks~~i~~VRlY~~d-------~~vL~A---~~~tgikV~lGV~n~~l---~~la~~~~~A~~Wv~~ 112 (392)
+-+.++|.++.+.|+..|+++|-+-.+. ..+.+. .+..--++.+|-|-=.. .+-..+.++...-+.+
T Consensus 54 g~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 54 GIKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp T-----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 4457999999999999999999998874 134443 33344689999884110 0112233444444554
Q ss_pred hccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhh
Q 035682 113 HVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSL 192 (392)
Q Consensus 113 nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~ 192 (392)
.+..-.++..+..+-=||+-- +. ..-..++..|++.|+.++-|+|.+. +| ++
T Consensus 134 ~~~~~~~~~a~vlmGHGt~h~------an---~~Y~~l~~~l~~~~~~~v~vgtvEG--------~P--------~~--- 185 (262)
T PF06180_consen 134 EFPKKRKDEAVVLMGHGTPHP------AN---AAYSALQAMLKKHGYPNVFVGTVEG--------YP--------SL--- 185 (262)
T ss_dssp CS-TT-TTEEEEEEE---SCH------HH---HHHHHHHHHHHCCT-TTEEEEETTS--------SS--------BH---
T ss_pred hccccCCCCEEEEEeCCCCCC------cc---HHHHHHHHHHHhCCCCeEEEEEeCC--------CC--------CH---
Confidence 443222344454555555431 22 2334556778888888899999876 33 11
Q ss_pred hhHHHHHHHhhcCCcceeeccCCcccccC
Q 035682 193 IMKPLLQFLEDTNSSFLVNVYPYNMYRLN 221 (392)
Q Consensus 193 ~~~~~ldFL~~~~s~~~vNiyPyf~~~~~ 221 (392)
..++..|...+ +=-|.+.||.--.++
T Consensus 186 --~~vi~~L~~~g-~k~V~L~PlMlVAGd 211 (262)
T PF06180_consen 186 --EDVIARLKKKG-IKKVHLIPLMLVAGD 211 (262)
T ss_dssp --HHHHHHHHHHT--SEEEEEEESSS--H
T ss_pred --HHHHHHHHhcC-CCeEEEEecccccch
Confidence 44566666554 224889999864443
No 26
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=57.98 E-value=24 Score=36.95 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 140 SPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 140 ~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
.+..+..++.+.+.|.++||..+-+++
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~~~~~~~ 288 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYVPIGLDH 288 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 456778888899999999997665543
No 27
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=54.97 E-value=34 Score=36.83 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=54.8
Q ss_pred HhCCCCccEEEeeeccCCCCCCC-CCC-----CCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C
Q 035682 265 VAGHENIPVIVAETGWPSSGADA-SEV-----DATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G 336 (392)
Q Consensus 265 ~~g~~~~~VvVtETGWPS~G~~~-~~~-----~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G 336 (392)
|..|++++|.|+|-|-+...+.. ... ..=.+..+.|++.+.+.++. .|.- ..-+|+.++.|- +|. |
T Consensus 402 K~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G 475 (524)
T KOG0626|consen 402 KDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG 475 (524)
T ss_pred HhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC
Confidence 34589999999999988865321 001 13345667777877777753 3432 235899998874 366 7
Q ss_pred -CcceEeeec------CCceeEEE
Q 035682 337 -ERSWGILHQ------NFTQKYEI 353 (392)
Q Consensus 337 -E~~wGlf~~------d~~~ky~l 353 (392)
.-.|||++- .|.||-+.
T Consensus 476 y~~RFGlyyVDf~d~l~R~pK~Sa 499 (524)
T KOG0626|consen 476 YKVRFGLYYVDFKDPLKRYPKLSA 499 (524)
T ss_pred cccccccEEEeCCCCCcCCchhHH
Confidence 999999995 45555443
No 28
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=54.35 E-value=63 Score=32.86 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=57.3
Q ss_pred CCCeEEeecC-ChHHHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccCCCCcEEEEEecccccCC-CCCCh
Q 035682 63 NIPAVRLPNS-DPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDT-TPDLS 140 (392)
Q Consensus 63 ~i~~VRlY~~-d~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~-~~~~~ 140 (392)
.+++|-+|+. |++++..+...|++|++..... ...+ ++++....++++-| .+...-.+.+|-+==|-... +....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788888865 7899999999999999864321 2222 33333344444332 12111235555554443322 22335
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 035682 141 PFLLPAVRNVHLALHDLGI 159 (392)
Q Consensus 141 ~~Lv~am~nvr~aL~~~Gl 159 (392)
..+...|+++|++|++.|.
T Consensus 132 ~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 132 YALTELVKETTKAFKKENP 150 (358)
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 6889999999999998764
No 29
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=53.80 E-value=36 Score=35.98 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=44.8
Q ss_pred CCC-ccEEEeeeccCCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C-Ccce
Q 035682 268 HEN-IPVIVAETGWPSSGADASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G-ERSW 340 (392)
Q Consensus 268 ~~~-~~VvVtETGWPS~G~~~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G-E~~w 340 (392)
+++ +||+|||-|........++.. -=++--+.+++.+.+.+. .|-+.| -||.-++.|- .|. | ++.|
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~Dn~Ew~~Gy~~Rf 436 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGANVK-----GYFIWSLMDVFSWSNGYEKRY 436 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhccccCcc
Confidence 555 479999999986542111110 112344555555555553 355443 4666677764 355 7 9999
Q ss_pred EeeecCCc
Q 035682 341 GILHQNFT 348 (392)
Q Consensus 341 Glf~~d~~ 348 (392)
||++-|.+
T Consensus 437 GLv~VD~~ 444 (467)
T TIGR01233 437 GLFYVDFD 444 (467)
T ss_pred ceEEECCC
Confidence 99999875
No 30
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=52.35 E-value=39 Score=35.84 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C--Ccc
Q 035682 268 HENIPVIVAETGWPSSGAD-ASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G--ERS 339 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~-~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G--E~~ 339 (392)
++ +||+|||-|....... .++.. -=.+--+.+++.+.+.+. ..|.+.| -||.-++.|- .|. | ++.
T Consensus 366 Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~-~dGv~V~-----GY~~WSl~Dn~Ew~~G~y~~R 438 (476)
T PRK09589 366 YQ-LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVV-EDGVDLM-----GYTPWGCIDLVSAGTGEMKKR 438 (476)
T ss_pred cC-CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHH-hcCCCeE-----EEeeccccccccccCCccccc
Confidence 54 5899999999754311 01100 112333455555555541 2465544 4788888885 466 6 799
Q ss_pred eEeeecCCc
Q 035682 340 WGILHQNFT 348 (392)
Q Consensus 340 wGlf~~d~~ 348 (392)
|||++-|.+
T Consensus 439 fGlv~VD~~ 447 (476)
T PRK09589 439 YGFIYVDKD 447 (476)
T ss_pred eeeEEEcCC
Confidence 999998765
No 31
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.63 E-value=60 Score=33.50 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=53.5
Q ss_pred HhCCCCccEEEeeeccCCCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCC-------------------------CCCc
Q 035682 265 VAGHENIPVIVAETGWPSSGADASE--VDATPALAEMYLKGLVAHLKSGMG-------------------------SPLR 317 (392)
Q Consensus 265 ~~g~~~~~VvVtETGWPS~G~~~~~--~~aS~~na~~y~~~li~~~~~~~G-------------------------tp~r 317 (392)
-.|++..+|+.| |||.|.-.+- -..|-..++.-+.++++.++...+ .+.|
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~ 218 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADR 218 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCc
Confidence 456777888887 9999953221 125666667777777777764331 1111
Q ss_pred -CCccccEEEEEeeCCCCC---------C--CcceEeeec--CCceeEEEeeeccc
Q 035682 318 -REGVAEAYVYELVDIEVK---------G--ERSWGILHQ--NFTQKYEIEFSRAC 359 (392)
Q Consensus 318 -p~~~~~~y~Fe~FDe~wK---------G--E~~wGlf~~--d~~~ky~l~~~~~~ 359 (392)
-...+.--++.+=|.+-. | .+-|++|.. |+-++|+--+.|..
T Consensus 219 ~l~~ki~nViLAaPDiD~DVF~~Q~~~mg~~~~~ft~~~s~dDral~~s~~i~g~~ 274 (377)
T COG4782 219 PLPAKIKNVILAAPDIDVDVFSSQIAAMGKPDPPFTLFVSRDDRALALSRRISGDV 274 (377)
T ss_pred chhhhhhheEeeCCCCChhhHHHHHHHhcCCCCCeeEEecccchhhccccccccCC
Confidence 111233334443333322 3 777888876 77888887776544
No 32
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=49.34 E-value=25 Score=32.63 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEE
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTIL 88 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 88 (392)
+|+|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 888999999999999998888889999999987
No 33
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=49.02 E-value=25 Score=32.83 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.7
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEE
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTIL 88 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 88 (392)
+|+|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 889999999999999998888889999999997
No 34
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=45.08 E-value=45 Score=35.41 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C--Ccc
Q 035682 268 HENIPVIVAETGWPSSGAD-ASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G--ERS 339 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~-~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G--E~~ 339 (392)
++ +||+|||-|....... .++.. -=.+--+.+++.+.+.+. ..|.+.| -||.-++.|- .|. | ++.
T Consensus 367 Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~-----GY~~WSl~Dn~EW~~G~y~~R 439 (478)
T PRK09593 367 YQ-KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL-----GYTTWGCIDLVSAGTGEMKKR 439 (478)
T ss_pred cC-CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchHhhcccCCCccCe
Confidence 44 4899999999865421 01110 113344555565555552 1365544 4777788874 366 6 799
Q ss_pred eEeeecCCc
Q 035682 340 WGILHQNFT 348 (392)
Q Consensus 340 wGlf~~d~~ 348 (392)
|||++-|..
T Consensus 440 fGl~~VD~~ 448 (478)
T PRK09593 440 YGFIYVDRD 448 (478)
T ss_pred eceEEECCC
Confidence 999998765
No 35
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.05 E-value=2.5e+02 Score=29.23 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeeccCC
Q 035682 137 PDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPY 215 (392)
Q Consensus 137 ~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPy 215 (392)
..+.++.+.+++.+|++. . ++.+++.. +- .+| |. ..+.+ ...++|+.+.+ +-.+++|+|
T Consensus 268 ~~~~~~~~~~v~~lr~~~----~-~i~i~~d~-----Iv-G~P---gE----t~ed~-~~tl~~i~~l~-~~~i~~f~y 326 (440)
T PRK14334 268 EYRREKYLERIAEIREAL----P-DVVLSTDI-----IV-GFP---GE----TEEDF-QETLSLYDEVG-YDSAYMFIY 326 (440)
T ss_pred CCCHHHHHHHHHHHHHhC----C-CcEEEEeE-----EE-ECC---CC----CHHHH-HHHHHHHHhcC-CCEeeeeEe
Confidence 345677888888887653 2 24444432 22 233 22 12233 66889987665 445677775
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=43.04 E-value=50 Score=35.08 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C--Ccc
Q 035682 268 HENIPVIVAETGWPSSGAD-ASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G--ERS 339 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~-~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G--E~~ 339 (392)
+. +||+|||-|....... .++.. -=++--+.+++.+.+.+. ..|.+.| -||.-++.|- .|. | ++.
T Consensus 367 Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~-----GY~~WSl~DnfEw~~G~y~~R 439 (477)
T PRK15014 367 YQ-KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM-----GYTPWGCIDCVSFTTGQYSKR 439 (477)
T ss_pred cC-CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchhhhcccCCCccCc
Confidence 54 5899999999864411 01100 112333455555555552 1365544 4788888884 466 6 899
Q ss_pred eEeeecCCc
Q 035682 340 WGILHQNFT 348 (392)
Q Consensus 340 wGlf~~d~~ 348 (392)
|||++-|.+
T Consensus 440 fGl~~VD~~ 448 (477)
T PRK15014 440 YGFIYVNKH 448 (477)
T ss_pred cceEEECCC
Confidence 999988655
No 37
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=42.16 E-value=66 Score=33.17 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh-------------H---HHHHHhcCCc-----eEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP-------------S---LIRAFAYTNT-----TILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~-------------~---vL~A~~~tgi-----kV~lGV~n~~l~~la~~~~~A~~W 109 (392)
.+.++.|+..|+++|-+= +.|+ + .++.+++.|+ .+|.|+|.+...++..+.+.+.+.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l 194 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIAL 194 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcC
Confidence 456677787788765321 2222 2 3334444444 468899987666665544433221
Q ss_pred HHhhccccCCCCcEEEEEec-ccccCC----C---CCChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 110 LYRHVLPFYPRSKISLISVG-NDIFDT----T---PDLSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~VG-NEvL~~----~---~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
=-.+| .+....+- .-.+.+ + ....+........+++.|.++||.+.-++.
T Consensus 195 ~p~~i-------s~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisn 252 (400)
T PRK07379 195 NPTHL-------SCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISN 252 (400)
T ss_pred CCCEE-------EEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeeh
Confidence 11111 11111110 101111 1 123455666777799999999997765554
No 38
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.65 E-value=30 Score=35.69 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEE
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTIL 88 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 88 (392)
-+|+|+..|+++||+. ++|.-+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3889999999999999 77888999999999997
No 39
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=41.60 E-value=3.9e+02 Score=27.10 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHH---cCCCCeEEeecCCh-------HHHHHHhcCCc-eEEEc
Q 035682 48 PPPPPDRVASIVT---SLNIPAVRLPNSDP-------SLIRAFAYTNT-TILLS 90 (392)
Q Consensus 48 nlps~~~v~~llk---s~~i~~VRlY~~d~-------~vL~A~~~tgi-kV~lG 90 (392)
++.|++++..+++ ..|+.+|||-+-.| ++++.+++.++ ++.++
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islT 94 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLT 94 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEe
Confidence 4668999866664 47899999998765 56666666544 24444
No 40
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=38.18 E-value=36 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEEE
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILL 89 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~l 89 (392)
+|+|+..|+++||+.. +|.-+.++.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 8899999999999999 89899999999999973
No 41
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=37.91 E-value=46 Score=30.82 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.3
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEE
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTIL 88 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 88 (392)
+|+|+..|++++|+.+..+.-+.++.+.|++|+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 888999999999999998878889999999997
No 42
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=37.04 E-value=1.1e+02 Score=30.90 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeee
Q 035682 141 PFLLPAVRNVHLALHDLGIKKIPVS 165 (392)
Q Consensus 141 ~~Lv~am~nvr~aL~~~Gl~~I~Vs 165 (392)
+.+....+.+++.|.+.|+....++
T Consensus 220 ~~~~~~~~~~~~~l~~~G~~~ye~s 244 (375)
T PRK05628 220 DVLADRYELADARLSAAGFDWYEVS 244 (375)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeeec
Confidence 4567778888899999999766554
No 43
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=36.64 E-value=94 Score=33.04 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=43.9
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEeeCC-CCC-C--Ccc
Q 035682 268 HENIPVIVAETGWPSSGAD-ASEVD---ATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYELVDI-EVK-G--ERS 339 (392)
Q Consensus 268 ~~~~~VvVtETGWPS~G~~-~~~~~---aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~FDe-~wK-G--E~~ 339 (392)
++ +||+|||-|....... .++.. -=.+--+.+++.+.+.+. .|.+.| -||.-++.|- .|. | .+.
T Consensus 364 Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~V~-----GY~~WSl~Dn~Ew~~G~y~~R 435 (474)
T PRK09852 364 YQ-KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIA--DGIPLM-----GYTTWGCIDLVSASTGEMSKR 435 (474)
T ss_pred cC-CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--CCCCEE-----EEEeecccccccccCCCccce
Confidence 54 5799999999754311 01111 112334455555555553 465544 4777888874 355 6 799
Q ss_pred eEeeecCCc
Q 035682 340 WGILHQNFT 348 (392)
Q Consensus 340 wGlf~~d~~ 348 (392)
|||++-|.+
T Consensus 436 fGLv~VD~~ 444 (474)
T PRK09852 436 YGFVYVDRD 444 (474)
T ss_pred eeeEEECCC
Confidence 999998765
No 44
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=34.89 E-value=79 Score=26.69 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCeEEee--cCC---hHHHHHHhcCCceEEE
Q 035682 53 DRVASIVTSLNIPAVRLP--NSD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~l 89 (392)
+++++.++.++++.|+++ +.. ..+|++++..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 344566677899998888 333 4799999999998654
No 45
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.77 E-value=2.7e+02 Score=29.15 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh----------------HHHHHHhcCCc-----eEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP----------------SLIRAFAYTNT-----TILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~----------------~vL~A~~~tgi-----kV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.|+..|+++|-+= +.++ +.++.+++.|+ .+++|+|.+...++....+.+...
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l 230 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLEL 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhc
Confidence 466777777777776543 2221 23444555665 367888887776665554433221
Q ss_pred HHhhccccCCCCcEEEEEecccccC----C-----CCCChhHHHHHHHHHHHHHHhcCCCceeee
Q 035682 110 LYRHVLPFYPRSKISLISVGNDIFD----T-----TPDLSPFLLPAVRNVHLALHDLGIKKIPVS 165 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~VGNEvL~----~-----~~~~~~~Lv~am~nvr~aL~~~Gl~~I~Vs 165 (392)
. | +.|..-..-.+... + ...+.++....++.+.+.|.++||.+..++
T Consensus 231 ---~-----~-~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s 286 (453)
T PRK09249 231 ---R-----P-DRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMD 286 (453)
T ss_pred ---C-----C-CEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 1 1 11211111111110 0 012355677778888999999999665554
No 46
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.41 E-value=52 Score=34.15 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=33.3
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCC
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~ 92 (392)
.+++|+..|+++||+.+.++.-+.++.+.||+|.=-++
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 38889999999999999999999999999999974444
No 47
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.26 E-value=1.7e+02 Score=29.60 Aligned_cols=106 Identities=9% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh-------------H---HHHHHhcCC-----ceEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP-------------S---LIRAFAYTN-----TTILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~-------------~---vL~A~~~tg-----ikV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.++..|+++|-+= +.+. + .++.+++.| +.++.|+|.+...++....+.+.+
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~- 181 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILK- 181 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHh-
Confidence 566778887787765321 2221 2 334444455 457899998777666544433222
Q ss_pred HHhhccccCCCCcEEEEEe-cccccCC--CCCChhHHHHHHHHHHHHHHhcCCCceeee
Q 035682 110 LYRHVLPFYPRSKISLISV-GNDIFDT--TPDLSPFLLPAVRNVHLALHDLGIKKIPVS 165 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~V-GNEvL~~--~~~~~~~Lv~am~nvr~aL~~~Gl~~I~Vs 165 (392)
+.+. ...+....+ -+-.+.+ .....+.-...++.+++.|.+.||.+-.|+
T Consensus 182 ----l~p~--~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis 234 (353)
T PRK05904 182 ----HKIN--HISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVS 234 (353)
T ss_pred ----cCCC--EEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEech
Confidence 1110 112222222 1111222 112334556677888999999999765554
No 48
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.21 E-value=3.6e+02 Score=25.72 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHcCCCCeEEeecCCh--------HHHHHHhc-CCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccCCC
Q 035682 50 PPPDRVASIVTSLNIPAVRLPNSDP--------SLIRAFAY-TNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPR 120 (392)
Q Consensus 50 ps~~~v~~llks~~i~~VRlY~~d~--------~vL~A~~~-tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~p~ 120 (392)
.+|-++++.++..+++.+=+.|.|. ++++.+.. .-.+|.+|=... +.+.++.++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 3688889989889999999888762 67777765 444788865532 22344555543
Q ss_pred CcEEEEEecccccCC
Q 035682 121 SKISLISVGNDIFDT 135 (392)
Q Consensus 121 ~~I~~I~VGNEvL~~ 135 (392)
-+..|+||+|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 24557899998865
No 49
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=33.65 E-value=72 Score=31.32 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=50.0
Q ss_pred ChHHHHHHhcCCceEEEcCCCCC--------hhhHhhhHHHHHHHHHhhccccCCCCcEEEEEecccccCCCCCChhHHH
Q 035682 73 DPSLIRAFAYTNTTILLSIPNAF--------VPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLL 144 (392)
Q Consensus 73 d~~vL~A~~~tgikV~lGV~n~~--------l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv 144 (392)
++++++++++.++||++.|.+.. ...+.++++.....++ +|..+...-.+.+|-+-=|.+.. ......+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~ 123 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPP--EDREAYT 123 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCH--HHHHHHH
Confidence 35888888888999998886532 2233444332222222 22222111135566555455432 2356789
Q ss_pred HHHHHHHHHHHhcCC
Q 035682 145 PAVRNVHLALHDLGI 159 (392)
Q Consensus 145 ~am~nvr~aL~~~Gl 159 (392)
..|+++|++|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987765
No 50
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.32 E-value=55 Score=34.10 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=31.5
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEE
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTIL 88 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~ 88 (392)
.+++|+..|+++||+.+.+|.-+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 4888999999999999999999999999999997
No 51
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.30 E-value=3.5e+02 Score=25.32 Aligned_cols=98 Identities=12% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCCeEEee--cCC--hHHHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccCCC-CcEEEE
Q 035682 52 PDRVASIVTSLNIPAVRLP--NSD--PSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPR-SKISLI 126 (392)
Q Consensus 52 ~~~v~~llks~~i~~VRlY--~~d--~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~p~-~~I~~I 126 (392)
|++.++.++..|.+.|=+- +++ .++++.+++.|+++-|.+..+. .+ ..+.++.+. +.|.-.
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~------------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV------------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc------------hHHHHHhhhcCEEEEE
Confidence 4556666655555544322 122 2688888889999888775431 11 113344443 233333
Q ss_pred EecccccCCCCCChhHHHHHHHHHHHHHHhcCCC-ceeee
Q 035682 127 SVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIK-KIPVS 165 (392)
Q Consensus 127 ~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~-~I~Vs 165 (392)
+| |+=++++..-+..++.|+++|+.+.+.|++ .|.|.
T Consensus 135 sV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 135 SV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp SS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred Ee--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 33 443556778889999999999999998875 35444
No 52
>PRK08815 GTP cyclohydrolase; Provisional
Probab=33.16 E-value=56 Score=33.79 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCC
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~ 92 (392)
+|+|+..|+++||+.+.++.-+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 8889999999999999999888999999999973333
No 53
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=33.02 E-value=5.3e+02 Score=26.63 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeeccCCc
Q 035682 137 PDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYN 216 (392)
Q Consensus 137 ~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPyf 216 (392)
..+.++...+++.+|++.. ++.+++. ++. .|| | +..+.+ +..++|+.+.+ +-.+++++|-
T Consensus 266 ~~~~~~~~~~i~~l~~~~~-----~i~i~~~-----~I~-G~P---g----ET~e~~-~~t~~fl~~~~-~~~~~~~~~s 325 (430)
T TIGR01125 266 PGSGEQQLDFIERLREKCP-----DAVLRTT-----FIV-GFP---G----ETEEDF-QELLDFVEEGQ-FDRLGAFTYS 325 (430)
T ss_pred CCCHHHHHHHHHHHHHhCC-----CCeEeEE-----EEE-ECC---C----CCHHHH-HHHHHHHHhcC-CCEEeeeecc
Confidence 3456778888888877531 2334432 221 233 2 112333 77899998765 4457888775
Q ss_pred cc
Q 035682 217 MY 218 (392)
Q Consensus 217 ~~ 218 (392)
..
T Consensus 326 p~ 327 (430)
T TIGR01125 326 PE 327 (430)
T ss_pred CC
Confidence 43
No 54
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.63 E-value=1.5e+02 Score=30.91 Aligned_cols=107 Identities=8% Similarity=0.030 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh----------------HHHHHHhcCCc-----eEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP----------------SLIRAFAYTNT-----TILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~----------------~vL~A~~~tgi-----kV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.|+..|+++|-+= +.++ +.++.+++.|+ .++.|+|.+...++......+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~- 219 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALV- 219 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh-
Confidence 466777777777765431 2221 23444555555 46889998877777655444322
Q ss_pred HHhhccccCCCCcEEEEEe-cccccCCC-CCChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 110 LYRHVLPFYPRSKISLISV-GNDIFDTT-PDLSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~V-GNEvL~~~-~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
+.+ ....+..+.+ -+-.|.+. ....+......+..++.|.++||.+..++.
T Consensus 220 ----l~~--~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~ 272 (430)
T PRK08208 220 ----YRP--EELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRM 272 (430)
T ss_pred ----CCC--CEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecc
Confidence 111 0011111111 11112221 123456677778888999999997665554
No 55
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=32.41 E-value=57 Score=35.41 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCC------ChhhHhhhHHHHHHHHHhhccccCCCCcEEEEEe
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNA------FVPTLAANRTLAQRWLYRHVLPFYPRSKISLISV 128 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~------~l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~V 128 (392)
.+++|+..|+++||+...+|.-+.++++.||+|.==+|.. ...-+... .+. + .+. ++.+...++++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK---~~k-~-gH~---l~~~~~~~~~~ 413 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATK---AEK-L-GHL---LLQTYLVTIAI 413 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHH---HHh-h-CCc---cCCCccccEEE
Confidence 3888999999999999999999999999999987333321 11112111 000 1 111 12111112222
Q ss_pred cccccCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 035682 129 GNDIFDTTPDLSPFLLPAVRNVHLALHDLGIK 160 (392)
Q Consensus 129 GNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~ 160 (392)
- .........++-..++.+++..+..++.
T Consensus 414 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (555)
T PRK09319 414 A---WDGEPYSVTERYELLEKLRHLARSHGLL 442 (555)
T ss_pred E---ecCCCCchHHHHHHHHHHHHHHHhcCce
Confidence 1 0112234667888888888888777763
No 56
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.21 E-value=56 Score=33.34 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCCeEEeecCC-hHHHHHHhcCCceEE
Q 035682 53 DRVASIVTSLNIPAVRLPNSD-PSLIRAFAYTNTTIL 88 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY~~d-~~vL~A~~~tgikV~ 88 (392)
.-.+++|+..|+++||+...+ |.-+.++++.||+|.
T Consensus 298 gigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 298 GIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred hHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 334888999999999999999 888889999999986
No 57
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=31.86 E-value=1.4e+02 Score=27.68 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeec
Q 035682 143 LLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNV 212 (392)
Q Consensus 143 Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNi 212 (392)
.-.+++.+.+.+...|+.+|++.+... . +.|.. +...+++.+.+.+.+-|+.+++
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~-~------~~~~~--------~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLG-G------FDPDD--------PRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSET-T------CCTTS--------GHCHHHHHHHHHHHT-EEEEEE
T ss_pred chhHHHHHHHhccccceeeeEecCCCC-c------ccccc--------HHHHHHHHHHHHhhccceeeec
Confidence 346888888889899988888876443 1 11111 1110378899999998887774
No 58
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=31.30 E-value=71 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHHHHhcCCC--c-eeeec
Q 035682 138 DLSPFLLPAVRNVHLALHDLGIK--K-IPVST 166 (392)
Q Consensus 138 ~~~~~Lv~am~nvr~aL~~~Gl~--~-I~VsT 166 (392)
...+|.-.+++|+++.|+++|.+ + ++++.
T Consensus 26 ~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~v 57 (105)
T cd06150 26 DITGQTRQVLAKIDALLAEAGSDKSRILSATI 57 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 34679999999999999999986 3 66654
No 59
>PF15560 Imm8: Immunity protein 8
Probab=31.26 E-value=71 Score=28.08 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEEEEecccccCCCCCChhHHHHHHHHHHHHHHhc-------CCCceeeecccccceeecccCCCCCCcccccc
Q 035682 123 ISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDL-------GIKKIPVSTTFSFFNIITTSFPPSSAQFQEPA 189 (392)
Q Consensus 123 I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~-------Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~ 189 (392)
+-.|++|-|... ...+.|.++++|+.|+.. |++++++.--.+ .++ ++|=|++|.+...+
T Consensus 4 ~ln~ViGG~~~~-----~~~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~s-Gdv--S~Y~~~sGIyq~rY 69 (133)
T PF15560_consen 4 ILNIVIGGQIDA-----EKNLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFS-GDV--SSYCDKSGIYQCRY 69 (133)
T ss_pred EEEEEEcCcchH-----HHHHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEc-Cch--hhhcCCCCcchhHH
Confidence 345667766543 268999999999998754 677788877666 665 47888999875443
No 60
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.11 E-value=61 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEE
Q 035682 55 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILL 89 (392)
Q Consensus 55 v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~l 89 (392)
-+++|+..|+++||+.+.+|.-+.++.+.||+|.=
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve 406 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVG 406 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEE
Confidence 38889999999999999999999999999999973
No 61
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=31.02 E-value=1.2e+02 Score=31.79 Aligned_cols=28 Identities=11% Similarity=-0.097 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 139 LSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 139 ~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
..+......+..++.|.++||.++-++.
T Consensus 274 ~~~~~~~my~~~~~~L~~~Gy~~yeis~ 301 (449)
T PRK09058 274 TPAERADMYAYGVEFLAKAGWRQLSNSH 301 (449)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEeeee
Confidence 3456677778889999999997665543
No 62
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.99 E-value=89 Score=29.77 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHhcCCceEEEcCCCCC---hhhHhhhHHHHHHHHHhhccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHH
Q 035682 75 SLIRAFAYTNTTILLSIPNAF---VPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVH 151 (392)
Q Consensus 75 ~vL~A~~~tgikV~lGV~n~~---l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr 151 (392)
..+++++..|+||++.|.... ...+.+++...+.++++-+ .+...-.+.+|-+==|-.... .......++++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 456777778999998886432 1223334443333333222 111111345555444443221 457888999999
Q ss_pred HHHHhcCC
Q 035682 152 LALHDLGI 159 (392)
Q Consensus 152 ~aL~~~Gl 159 (392)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99988764
No 63
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=30.91 E-value=97 Score=26.67 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCeEEee--c--------CC---hHHHHHHhcCCceEEE
Q 035682 53 DRVASIVTSLNIPAVRLP--N--------SD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgikV~l 89 (392)
+++++.++.+|++.|+++ + +. ..+|++++..|++|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 455666677899987777 3 32 3789999999999754
No 64
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=30.58 E-value=1.6e+02 Score=30.85 Aligned_cols=104 Identities=9% Similarity=0.132 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh----------------HHHHHHhcCCc-----eEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP----------------SLIRAFAYTNT-----TILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~----------------~vL~A~~~tgi-----kV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.|+..|+++|-+= +.++ +.++.+++.|+ .++.|+|.+...++....+.+..
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 229 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE- 229 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHh-
Confidence 566777777777766431 1111 23344445555 47889988776666554443322
Q ss_pred HHhhccccCCCCcEEE--EE-------ecccccCC-CCCChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 110 LYRHVLPFYPRSKISL--IS-------VGNDIFDT-TPDLSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~--I~-------VGNEvL~~-~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
+ -| ..|.. .. .+.. ... ...+.++....++.+.+.|.+.||.++.++.
T Consensus 230 ----l---~~-~~is~y~L~~~p~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~ 287 (455)
T TIGR00538 230 ----L---NP-DRLAVFNYAHVPWVKPAQRK-IPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDH 287 (455)
T ss_pred ----c---CC-CEEEEecCccccchhHHHhc-ccccCCCCHHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 1 11 11211 11 0100 001 1124567778888899999999997665553
No 65
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=30.17 E-value=85 Score=24.30 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccccCCCCcEEEEEecccccCCC---CCChhHHHHHHHHHHHHHHhc
Q 035682 104 TLAQRWLYRHVLPFYPRSKISLISVGNDIFDTT---PDLSPFLLPAVRNVHLALHDL 157 (392)
Q Consensus 104 ~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~---~~~~~~Lv~am~nvr~aL~~~ 157 (392)
+.-..|+++||.- |+|.++.+ ....+.|+|+++..++.++..
T Consensus 11 ~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 11 EILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 3457899999743 45555542 234679999999999888643
No 66
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.09 E-value=1.5e+02 Score=28.07 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=24.0
Q ss_pred HhCCCCccEEEeeeccCCCCCCCCC--CCCCHHHHHHHHHHHHHHHhc
Q 035682 265 VAGHENIPVIVAETGWPSSGADASE--VDATPALAEMYLKGLVAHLKS 310 (392)
Q Consensus 265 ~~g~~~~~VvVtETGWPS~G~~~~~--~~aS~~na~~y~~~li~~~~~ 310 (392)
..++++..|+ -.|||.|.-.+- ...+...++..+..+++.+.+
T Consensus 44 ~~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3566764444 459999952211 123444455556667766654
No 67
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.77 E-value=1.3e+02 Score=30.16 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCCeeeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHcCCCCeEEee--------------------cCCh--HHHHHH
Q 035682 23 SSRPLIGVTYAPPILAPTIANPHPPPPPPPDRVASIVTSLNIPAVRLP--------------------NSDP--SLIRAF 80 (392)
Q Consensus 23 ~~~~~~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks~~i~~VRlY--------------------~~d~--~vL~A~ 80 (392)
+..+.+|+|-| +-.|++| ++|+++|.... ++.-+| |.++ +..+-+
T Consensus 111 ~~~~VVGLsIg----------TRPDClp--d~VldlL~e~~-~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~ 177 (312)
T COG1242 111 SEAGVVGLSIG----------TRPDCLP--DDVLDLLAEYN-KRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRL 177 (312)
T ss_pred CcCCeeEEeec----------CCCCCCc--HHHHHHHHHHh-hheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHH
Confidence 45678999999 6788887 88988887532 222222 1222 455666
Q ss_pred hcCCceE----EEcCCCCChhhH
Q 035682 81 AYTNTTI----LLSIPNAFVPTL 99 (392)
Q Consensus 81 ~~tgikV----~lGV~n~~l~~l 99 (392)
++.||+| ++|+|-++-..+
T Consensus 178 rkrgIkvc~HiI~GLPgE~~~~m 200 (312)
T COG1242 178 RKRGIKVCTHLINGLPGETRDEM 200 (312)
T ss_pred HHcCCeEEEEEeeCCCCCCHHHH
Confidence 7889985 789997654443
No 68
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=29.22 E-value=4.3e+02 Score=23.85 Aligned_cols=78 Identities=6% Similarity=-0.075 Sum_probs=40.7
Q ss_pred HHHHHHhcCCceEEEcCCCCC--h--hhHhhhHHHHHHHHHhhcc-ccCCCCcEEEEEecccccCCCCCChhHHHHHHHH
Q 035682 75 SLIRAFAYTNTTILLSIPNAF--V--PTLAANRTLAQRWLYRHVL-PFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRN 149 (392)
Q Consensus 75 ~vL~A~~~tgikV~lGV~n~~--l--~~la~~~~~A~~Wv~~nI~-~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~n 149 (392)
.+|+++.+.||||.+|++.+. - .+.+.....+.. +...+. .|.....+.+--+-.|+=... ...+++.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 678999999999999998531 0 111111111111 212221 222223577777777864442 223555566
Q ss_pred HHHHHHhc
Q 035682 150 VHLALHDL 157 (392)
Q Consensus 150 vr~aL~~~ 157 (392)
+.+.|++.
T Consensus 144 l~~~lk~~ 151 (166)
T PF14488_consen 144 LGKYLKQI 151 (166)
T ss_pred HHHHHHHh
Confidence 66666543
No 69
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=28.94 E-value=1.1e+02 Score=26.42 Aligned_cols=47 Identities=6% Similarity=0.205 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHcCCCCeEEeecCC-----hHHHHHHhcCCceEEEcCCC
Q 035682 47 PPPPPPDRVASIVTSLNIPAVRLPNSD-----PSLIRAFAYTNTTILLSIPN 93 (392)
Q Consensus 47 ~nlps~~~v~~llks~~i~~VRlY~~d-----~~vL~A~~~tgikV~lGV~n 93 (392)
+...+++++++.++.+|++.|=+=|-+ ++..+.++..||++++|+-.
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 445689999999999999988877654 35667777899999999863
No 70
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=28.56 E-value=3.4e+02 Score=28.08 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=57.9
Q ss_pred CCCCC-CHHHHHHHHHc-CCC---CeEEeecC---------ChHHHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHH
Q 035682 46 PPPPP-PPDRVASIVTS-LNI---PAVRLPNS---------DPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLY 111 (392)
Q Consensus 46 ~~nlp-s~~~v~~llks-~~i---~~VRlY~~---------d~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~ 111 (392)
||.|. |+.++..+++. ..| +.||+=+= +.++.+.++++..+|++-.-...-..+.....+|..-++
T Consensus 167 GDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~ 246 (369)
T COG1509 167 GDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLR 246 (369)
T ss_pred CCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHHH
Confidence 44443 56777777765 234 45555431 246777888888998887654444445444344444333
Q ss_pred hhccccCCCCcEEEEEeccc-ccCCCCCChhHHHHHHHHHHHHHHhcCC
Q 035682 112 RHVLPFYPRSKISLISVGND-IFDTTPDLSPFLLPAVRNVHLALHDLGI 159 (392)
Q Consensus 112 ~nI~~~~p~~~I~~I~VGNE-vL~~~~~~~~~Lv~am~nvr~aL~~~Gl 159 (392)
+ .+|.++|. ||.++-+. =.+.|.++..+|...|.
T Consensus 247 ~-----------aGv~l~NQsVLLrGVND---~~evl~~L~~~L~~~gV 281 (369)
T COG1509 247 D-----------AGVPLLNQSVLLRGVND---DPEVLKELSRALFDAGV 281 (369)
T ss_pred H-----------cCceeecchheecccCC---CHHHHHHHHHHHHHcCC
Confidence 2 36778887 66665443 23456666667766553
No 71
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=28.44 E-value=40 Score=29.62 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHcCCCCeEEeecC
Q 035682 46 PPPPPPPDRVASIVTSLNIPAVRLPNS 72 (392)
Q Consensus 46 ~~nlps~~~v~~llks~~i~~VRlY~~ 72 (392)
|.|..+-++..+.+...|++.||+|-.
T Consensus 15 G~nki~MaeLr~~l~~~Gf~~V~Tyi~ 41 (137)
T PF08002_consen 15 GKNKIKMAELREALEDLGFTNVRTYIQ 41 (137)
T ss_dssp TBS---HHHHHHHHHHCT-EEEEEETT
T ss_pred CCCcccHHHHHHHHHHcCCCCceEEEe
Confidence 666666788888898999999999963
No 72
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.29 E-value=1.8e+02 Score=29.65 Aligned_cols=106 Identities=8% Similarity=0.105 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh-------------HH---HHHHhcCC-----ceEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP-------------SL---IRAFAYTN-----TTILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~-------------~v---L~A~~~tg-----ikV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.++..|+++|-+= +.++ ++ ++.+++.| +.++.|+|.+...++..+.+.+.+
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~- 181 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAIT- 181 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHc-
Confidence 455778888888876331 2222 22 33344444 346889998877766554443322
Q ss_pred HHhhccccCCCCcEEEEEe--cccccCC-------CCCChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 110 LYRHVLPFYPRSKISLISV--GNDIFDT-------TPDLSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~V--GNEvL~~-------~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
+.+ ....+....+ |. .+.+ .....+......+.+++.|.++||.+.-++.
T Consensus 182 ----l~~--~~is~y~l~~~~gT-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 240 (370)
T PRK06294 182 ----LPI--THISLYNLTIDPHT-SFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELAS 240 (370)
T ss_pred ----cCC--CeEEEeeeEecCCC-hHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeee
Confidence 111 0011222222 21 1111 1122345567777789999999998776664
No 73
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.04 E-value=5.6e+02 Score=27.47 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=37.7
Q ss_pred HHhhccccC-CCCcEEEEEecccccCC---C------CCChhHHHHHHHH-HHHHHHhcCC-Cceeee
Q 035682 110 LYRHVLPFY-PRSKISLISVGNDIFDT---T------PDLSPFLLPAVRN-VHLALHDLGI-KKIPVS 165 (392)
Q Consensus 110 v~~nI~~~~-p~~~I~~I~VGNEvL~~---~------~~~~~~Lv~am~n-vr~aL~~~Gl-~~I~Vs 165 (392)
+.+-|+.|- -+..|.+|++.||+... . ..+++++...|++ +.-+|++.|+ .++|+-
T Consensus 210 ~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 210 FVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp HHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred HHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 333444442 25689999999999862 1 2357788888987 9999999998 457764
No 74
>PRK05723 flavodoxin; Provisional
Probab=27.47 E-value=4.4e+02 Score=23.33 Aligned_cols=115 Identities=10% Similarity=0.138 Sum_probs=58.5
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCC---ChhhHhhhH
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNA---FVPTLAANR 103 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~---~l~~la~~~ 103 (392)
.++|-||. ..|+.---++++.+.++..+++..-+...+..-+.... .. .|++++... +.+.-+
T Consensus 2 ~i~I~ygS---------~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~li~~~sT~G~Ge~Pd~~--- 67 (151)
T PRK05723 2 KVAILSGS---------VYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFA-PE-ALLAVTSTTGMGELPDNL--- 67 (151)
T ss_pred eEEEEEEc---------CchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCC-CC-eEEEEECCCCCCCCchhH---
Confidence 47889993 34432111233344455556543223333332232221 12 356666543 233222
Q ss_pred HHHHHHHHhhccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCCc
Q 035682 104 TLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKK 161 (392)
Q Consensus 104 ~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~~ 161 (392)
..--+|+++.....+++.++.-+-.|+. .+++.--.+++.+.+.|++.|-.+
T Consensus 68 ~~f~~~L~~~~~~~l~~~~~aVfGLGDs------~Y~~~Fc~a~~~ld~~L~~lGA~r 119 (151)
T PRK05723 68 MPLYSAIRDQLPAAWRGLPGAVIALGDS------SYGDTFCGGGEQMRELFAELGVRE 119 (151)
T ss_pred HHHHHHHHhcCccCCCCCEEEEEeEeCC------cchHHHhHHHHHHHHHHHHCCCcE
Confidence 2234466654222345555666666655 233456688999999999998754
No 75
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=27.01 E-value=1.2e+02 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCeEEee--c--------CC---hHHHHHHhcCCceEEE
Q 035682 53 DRVASIVTSLNIPAVRLP--N--------SD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgikV~l 89 (392)
+++++.++.+|++.|+++ + .. ..+|++++..|++|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445666777899988877 3 33 3799999999999754
No 76
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=26.92 E-value=6.9e+02 Score=25.60 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHH---cCCCCeEEeec-------CC-------hHHHHHHhcC-Cce-EEEcCCCCChhhHhhhHHHHHHH
Q 035682 49 PPPPDRVASIVT---SLNIPAVRLPN-------SD-------PSLIRAFAYT-NTT-ILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 49 lps~~~v~~llk---s~~i~~VRlY~-------~d-------~~vL~A~~~t-gik-V~lGV~n~~l~~la~~~~~A~~W 109 (392)
.-++++|++.++ .+|++.|.+.| .| .++++++.+. |++ +-++--+ ...+. .+ -...
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~--~e-ll~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDID--EE-LLEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCC--HH-HHHH
Confidence 356788876554 46899998754 22 2566766643 442 4443211 11121 11 1222
Q ss_pred HHhhccccCCCCcEEEEEecccc-----cCC--CCCChhHHHHHHHHHHHHHHhcCCCceeeecccccceeecccCCCCC
Q 035682 110 LYRHVLPFYPRSKISLISVGNDI-----FDT--TPDLSPFLLPAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSS 182 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~VGNEv-----L~~--~~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~ 182 (392)
++++ + .....|.+|=|- |.. ...+.++...+++.+|+.. . ++.+++.. +- .+|
T Consensus 241 m~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~---gi~i~~~~-----Iv-G~P--- 300 (414)
T TIGR01579 241 IASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--P---DYAFGTDI-----IV-GFP--- 300 (414)
T ss_pred HHhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--C---CCeeeeeE-----EE-ECC---
Confidence 3321 0 012344555333 211 2345677888888887643 2 24444432 21 233
Q ss_pred CcccccchhhhhHHHHHHHhhcCCcceeeccCCcc
Q 035682 183 AQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNM 217 (392)
Q Consensus 183 g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPyf~ 217 (392)
| +..+.+ ...++|+.+.+ +-.+++|||--
T Consensus 301 g----ET~ed~-~~tl~~i~~~~-~~~~~~~~~sp 329 (414)
T TIGR01579 301 G----ESEEDF-QETLRMVKEIE-FSHLHIFPYSA 329 (414)
T ss_pred C----CCHHHH-HHHHHHHHhCC-CCEEEeeecCC
Confidence 2 112333 67889998765 45677777743
No 77
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.59 E-value=5.6e+02 Score=24.32 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHc-CCCCeEEeecCC---------hHHHHHHh-cCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccC
Q 035682 50 PPPDRVASIVTS-LNIPAVRLPNSD---------PSLIRAFA-YTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFY 118 (392)
Q Consensus 50 ps~~~v~~llks-~~i~~VRlY~~d---------~~vL~A~~-~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~ 118 (392)
.+|.++++.+.. .+++.+=+.|.| .++++.++ ..+++|.+|=.... .+.++.++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs-------~e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRT-------KSQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCC-------HHHHHHHHHC------
Confidence 367778888877 689999999875 25776664 57899999876432 2334444432
Q ss_pred CCCcEEEEEecccccCC
Q 035682 119 PRSKISLISVGNDIFDT 135 (392)
Q Consensus 119 p~~~I~~I~VGNEvL~~ 135 (392)
-+..|+||+|.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 24567899998865
No 78
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.59 E-value=1.1e+02 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCCeEEee--cCC---hHHHHHHhcCCceEEE
Q 035682 54 RVASIVTSLNIPAVRLP--NSD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 54 ~v~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~l 89 (392)
.+.+.++..+++.|+++ +.. ..++++++.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34556677899988887 333 3789999999998654
No 79
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.57 E-value=3.7e+02 Score=24.78 Aligned_cols=98 Identities=12% Similarity=0.001 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCCeEEeecCCh---------HHHHHHhcCCceEEEc--CCCCChhhHhhhHHHHHHHHHhhccccCCC
Q 035682 52 PDRVASIVTSLNIPAVRLPNSDP---------SLIRAFAYTNTTILLS--IPNAFVPTLAANRTLAQRWLYRHVLPFYPR 120 (392)
Q Consensus 52 ~~~v~~llks~~i~~VRlY~~d~---------~vL~A~~~tgikV~lG--V~n~~l~~la~~~~~A~~Wv~~nI~~~~p~ 120 (392)
...+++.|..+|.++|=+.+... ...++++..|+++..- .+.+...+.....+.+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 34556666667777776554321 2345667788876321 11111112223345566776543 1
Q ss_pred CcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCC---ceeeecccc
Q 035682 121 SKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIK---KIPVSTTFS 169 (392)
Q Consensus 121 ~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~---~I~VsT~~s 169 (392)
.+++|++.|+.+.. . +.++|++.|+. +|.|.+.+.
T Consensus 171 -~~~ai~~~~d~~a~---------g----~~~~l~~~g~~vp~di~vigfd~ 208 (265)
T cd01543 171 -KPVGIFACTDARAR---------Q----LLEACRRAGIAVPEEVAVLGVDN 208 (265)
T ss_pred -CCcEEEecChHHHH---------H----HHHHHHHhCCCCCCceEEEeeCC
Confidence 35678877665421 2 33455666763 577666555
No 80
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.04 E-value=4.1e+02 Score=25.49 Aligned_cols=70 Identities=6% Similarity=0.053 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHcCCCCeEEeecCCh---------HHHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccCCC
Q 035682 50 PPPDRVASIVTSLNIPAVRLPNSDP---------SLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPR 120 (392)
Q Consensus 50 ps~~~v~~llks~~i~~VRlY~~d~---------~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~p~ 120 (392)
..|-++++.++..+++.+=+.|.|. ++++.++..-++|.+|=... +.+.++.|+...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr-------s~e~~~~~l~~G------- 95 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR-------SLDYAEKLRKLG------- 95 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC-------CHHHHHHHHHCC-------
Confidence 3688899999889999999998762 57777765336788875542 234455665532
Q ss_pred CcEEEEEecccccCC
Q 035682 121 SKISLISVGNDIFDT 135 (392)
Q Consensus 121 ~~I~~I~VGNEvL~~ 135 (392)
+..|+||++.+.+
T Consensus 96 --a~rvvigT~a~~~ 108 (241)
T PRK14114 96 --YRRQIVSSKVLED 108 (241)
T ss_pred --CCEEEECchhhCC
Confidence 3557899998865
No 81
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.04 E-value=6.6e+02 Score=24.92 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHH---cCCCCeEEeecCCh-------HHHHHHhcCC-c-eEEE
Q 035682 49 PPPPDRVASIVT---SLNIPAVRLPNSDP-------SLIRAFAYTN-T-TILL 89 (392)
Q Consensus 49 lps~~~v~~llk---s~~i~~VRlY~~d~-------~vL~A~~~tg-i-kV~l 89 (392)
..+.+++.++++ ..+++.||+.+-+| ++++.+++.+ + ++.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~i 96 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSL 96 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEE
Confidence 467777766554 57899999998654 5667776654 4 4544
No 82
>CHL00041 rps11 ribosomal protein S11
Probab=25.81 E-value=1.4e+02 Score=25.57 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCeEEee--cCC---hHHHHHHhcCCceEEE
Q 035682 53 DRVASIVTSLNIPAVRLP--NSD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d---~~vL~A~~~tgikV~l 89 (392)
+++.+.++..|++.|+++ +.- ..++++++..|++|.-
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~ 104 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSS 104 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 344566677899988887 332 4789999999998753
No 83
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.53 E-value=1.5e+02 Score=25.87 Aligned_cols=42 Identities=7% Similarity=0.153 Sum_probs=33.0
Q ss_pred CHHHHHHHHHcCCCCeEEeecC---------------------C--hHHHHHHhcCCceEEEcCC
Q 035682 51 PPDRVASIVTSLNIPAVRLPNS---------------------D--PSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 51 s~~~v~~llks~~i~~VRlY~~---------------------d--~~vL~A~~~tgikV~lGV~ 92 (392)
+|+++++.||..+++.|-+|.- | .++++|+.+.||+|++=+-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3688899999888888888642 1 2678999999999988664
No 84
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=2.2e+02 Score=24.66 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCC
Q 035682 53 DRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~ 92 (392)
-.++++|+.+|++.|=+...-+..+..|++.||+|..+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4689999999999998888889999999999999999987
No 85
>PHA02754 hypothetical protein; Provisional
Probab=25.15 E-value=65 Score=24.60 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcCC--Cceeeecc
Q 035682 142 FLLPAVRNVHLALHDLGI--KKIPVSTT 167 (392)
Q Consensus 142 ~Lv~am~nvr~aL~~~Gl--~~I~VsT~ 167 (392)
..-.+|+++|..|.++|. ++|++-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 456799999999999997 46776554
No 86
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=24.62 E-value=92 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=18.4
Q ss_pred CHHHHHHHHHcC---CCCeEEeecCChHH
Q 035682 51 PPDRVASIVTSL---NIPAVRLPNSDPSL 76 (392)
Q Consensus 51 s~~~v~~llks~---~i~~VRlY~~d~~v 76 (392)
.|+++..+|+.. .-+++||||+|..+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 367777777653 34799999998643
No 87
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.77 E-value=4.9e+02 Score=22.70 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=59.3
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCCChhhHhhhHHHH
Q 035682 27 LIGVTYAPPILAPTIANPHPPPPPPPDRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLA 106 (392)
Q Consensus 27 ~~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A 106 (392)
.+.|-||. ..|+.--=++++.+.+++.++ .+++++.+. +..+.... .++++++.........+-..-
T Consensus 3 ~i~I~ygS---------~tGnae~~A~~l~~~~~~~g~-~~~~~~~~~--~~~l~~~~-~li~~~sT~G~Ge~p~~~~~f 69 (146)
T PRK09004 3 DITLISGS---------TLGGAEYVADHLAEKLEEAGF-STETLHGPL--LDDLSASG-LWLIVTSTHGAGDLPDNLQPF 69 (146)
T ss_pred eEEEEEEc---------CchHHHHHHHHHHHHHHHcCC-ceEEeccCC--HHHhccCC-eEEEEECCCCCCCCChhHHHH
Confidence 47899993 344321113444555556665 456666543 33344433 466666653211221222233
Q ss_pred HHHHHhhccccCCCCcEEEEEecccccCCCCCChhHHHHHHHHHHHHHHhcCCCc
Q 035682 107 QRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKK 161 (392)
Q Consensus 107 ~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~~~~~~Lv~am~nvr~aL~~~Gl~~ 161 (392)
-.|++.. .+.+++.++.-+-.||.. + +.--.+++++.+.|++.|-..
T Consensus 70 ~~~L~~~-~~~l~g~~~aVfGlGds~------Y-~~fc~~~~~ld~~l~~lGa~~ 116 (146)
T PRK09004 70 FEELQEQ-KPDLSQVRFAAIGIGSSE------Y-DTFCGAIDKLEQLLKAKGAKQ 116 (146)
T ss_pred HHHHHhc-CCCCCCCEEEEEeecCCC------H-HHHhHHHHHHHHHHHHcCCeE
Confidence 4566553 222444444444455542 2 345678899999999988754
No 88
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.49 E-value=1.1e+02 Score=28.66 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.5
Q ss_pred HHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCC
Q 035682 56 ASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNA 94 (392)
Q Consensus 56 ~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~ 94 (392)
+++|+-.||++||+-+.+|.-..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 778888999999999999999999999999998877653
No 89
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=23.36 E-value=1.2e+02 Score=27.36 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHhcC--CceEEEcCCCCChh---hHhhhHHHHHHHHHhhccccCCCCcEEEEEecccccCCCC-CChhHHHHHHH
Q 035682 75 SLIRAFAYT--NTTILLSIPNAFVP---TLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTP-DLSPFLLPAVR 148 (392)
Q Consensus 75 ~vL~A~~~t--gikV~lGV~n~~l~---~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~~~~-~~~~~Lv~am~ 148 (392)
.-++.+++. |+||++.|...... .++++.+..++.++ ++..+...-.+++|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345666654 99999988753211 23334333332222 2222211124555555434332211 12578999999
Q ss_pred HHHHHHHhcCC
Q 035682 149 NVHLALHDLGI 159 (392)
Q Consensus 149 nvr~aL~~~Gl 159 (392)
++|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 90
>PRK05309 30S ribosomal protein S11; Validated
Probab=22.98 E-value=1.7e+02 Score=25.55 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCeEEeec--CC---hHHHHHHhcCCceEEE
Q 035682 53 DRVASIVTSLNIPAVRLPN--SD---PSLIRAFAYTNTTILL 89 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY~--~d---~~vL~A~~~tgikV~l 89 (392)
+.+.+.++..|++.|+++= .. ..+|+++...|++|.-
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~ 108 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTS 108 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3445566778999999983 32 3789999999998653
No 91
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=22.77 E-value=3.3e+02 Score=28.79 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHhc--CCceEEEcCC----CCChhhHhhhHHHHHHHHHhhccccCCCCcEEEE--------EecccccCCCCCCh
Q 035682 75 SLIRAFAY--TNTTILLSIP----NAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLI--------SVGNDIFDTTPDLS 140 (392)
Q Consensus 75 ~vL~A~~~--tgikV~lGV~----n~~l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I--------~VGNEvL~~~~~~~ 140 (392)
..|..+++ +.+|+.+.|. ......++++.+..+..+++.| .+...-.+.+| ..|++...+.....
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saV-e~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~ 193 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAV-EFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDK 193 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHH-HHHHhcCCCceeeccccCCCCCCCCCCCCcccH
Q ss_pred hHHHHHHHHHHHHHHhcCCCc---eeeecccccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeeccCC
Q 035682 141 PFLLPAVRNVHLALHDLGIKK---IPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPY 215 (392)
Q Consensus 141 ~~Lv~am~nvr~aL~~~Gl~~---I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyPy 215 (392)
+..+..|+.||++|-.+|.+. ...|++-. -|...++.--...| ...|||+ |+--|
T Consensus 194 ~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~----------as~~~l~~~~~~~~-~~~vDyi---------NiMTY 251 (441)
T COG3325 194 ANYVLLLQELRKKLDKAGVEDGRHYQLTIAAP----------ASKDKLEGLNHAEI-AQYVDYI---------NIMTY 251 (441)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEEecC----------CchhhhhcccHHHH-HHHHhhh---------heeee
No 92
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.72 E-value=2e+02 Score=28.95 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh-------------H---HHHHHhcCCc-----eEEEcCCCCChhhHhhhHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP-------------S---LIRAFAYTNT-----TILLSIPNAFVPTLAANRTL 105 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~-------------~---vL~A~~~tgi-----kV~lGV~n~~l~~la~~~~~ 105 (392)
++.++.++..|+++|-+= +.++ + .++.+++.|+ .++.|+|.+...++..+.+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 456777787788866321 1111 2 3344445554 57889898766666554443
No 93
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.71 E-value=5.9e+02 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCCeEEeecCChHHHHHHhcCCceEEEcCCCCChhhHhhhHHHHHHHHHhhccccCCCCcEEEEEeccc
Q 035682 52 PDRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGND 131 (392)
Q Consensus 52 ~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgikV~lGV~n~~l~~la~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNE 131 (392)
.++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|++ ...|..+.+..+ + .-|+-|.|
T Consensus 71 ~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga------D--~vVaqG~E 133 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA------R--KFIFEGRE 133 (320)
T ss_pred hHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC------C--EEEEecCc
Confidence 455666666666777766555665578888999999988774 233444444322 2 34677888
Q ss_pred c
Q 035682 132 I 132 (392)
Q Consensus 132 v 132 (392)
.
T Consensus 134 A 134 (320)
T cd04743 134 C 134 (320)
T ss_pred C
Confidence 6
No 94
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.31 E-value=2.8e+02 Score=23.77 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHcCCCCeEEeecCC----------hHHHHHHhcCCceEEEcCCC
Q 035682 46 PPPPPPPDRVASIVTSLNIPAVRLPNSD----------PSLIRAFAYTNTTILLSIPN 93 (392)
Q Consensus 46 ~~nlps~~~v~~llks~~i~~VRlY~~d----------~~vL~A~~~tgikV~lGV~n 93 (392)
+-..|++.+.++.|...|+++|.+-..- +..+..++....++.+|-|.
T Consensus 52 ~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pL 109 (127)
T cd03412 52 GIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPL 109 (127)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCC
Confidence 3457999999999998999999887652 34556666668899999873
No 95
>PRK07198 hypothetical protein; Validated
Probab=22.06 E-value=77 Score=33.09 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHHcCCCCeE-EeecCChHHHHHHhcCCceEEEcCC
Q 035682 55 VASIVTSLNIPAV-RLPNSDPSLIRAFAYTNTTILLSIP 92 (392)
Q Consensus 55 v~~llks~~i~~V-RlY~~d~~vL~A~~~tgikV~lGV~ 92 (392)
.+|+|+..|+++| |+.+..+.-+.++.+.||+|+==|+
T Consensus 337 GAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 337 MPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 3788899999999 9999999899999999999985454
No 96
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.92 E-value=2.7e+02 Score=29.10 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCCeEEee--cCCh----------------HHHHHHhcC-----CceEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRLP--NSDP----------------SLIRAFAYT-----NTTILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRlY--~~d~----------------~vL~A~~~t-----gikV~lGV~n~~l~~la~~~~~A~~W 109 (392)
.+.++.++..|++||=+- +-+. .++..+++. ++.++.|+|.+.+.++.++.+.|.+-
T Consensus 137 ~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l 216 (416)
T COG0635 137 AEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALEL 216 (416)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 455778888888877554 2222 223333333 57789999988777776655444221
Q ss_pred HHhhccccCCC-CcEEEEEec-ccccCC----C--CCChhHHHHHHHHHHHHHHhcCCCceeee
Q 035682 110 LYRHVLPFYPR-SKISLISVG-NDIFDT----T--PDLSPFLLPAVRNVHLALHDLGIKKIPVS 165 (392)
Q Consensus 110 v~~nI~~~~p~-~~I~~I~VG-NEvL~~----~--~~~~~~Lv~am~nvr~aL~~~Gl~~I~Vs 165 (392)
-|+ -.+-..+|- +=.+.+ + -...++.+...+.+.+.|.++||..+-++
T Consensus 217 --------~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeis 272 (416)
T COG0635 217 --------GPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEIS 272 (416)
T ss_pred --------CCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeec
Confidence 122 122222222 222222 1 12345778888999999999999655444
No 97
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.48 E-value=7.9e+02 Score=24.21 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHH---HcCCCCeEEeecCCh-------HHHHHHhc-CCc-eEEE
Q 035682 48 PPPPPDRVASIV---TSLNIPAVRLPNSDP-------SLIRAFAY-TNT-TILL 89 (392)
Q Consensus 48 nlps~~~v~~ll---ks~~i~~VRlY~~d~-------~vL~A~~~-tgi-kV~l 89 (392)
...+.+++.+++ ...+++.|++.+-+| ++++.+++ .|+ ++.+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~i 94 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIAL 94 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEE
Confidence 356777776654 457899999998654 56676665 577 6665
No 98
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=21.45 E-value=1.3e+02 Score=30.40 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHcCCCCeEEeecCCh------HHHHHHhcCCceEEEcCCC
Q 035682 49 PPPPDRVASIVTSLNIPAVRLPNSDP------SLIRAFAYTNTTILLSIPN 93 (392)
Q Consensus 49 lps~~~v~~llks~~i~~VRlY~~d~------~vL~A~~~tgikV~lGV~n 93 (392)
.|+++++.+++.... ..||+|...| ++++.+++.|++|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 467788888876543 6788885543 6788889999999988654
No 99
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.40 E-value=5.5e+02 Score=25.29 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCCceeeecccccceeecccCCCCCCcccccchhhhhHHHHHHHhhcCCcceeeccC
Q 035682 145 PAVRNVHLALHDLGIKKIPVSTTFSFFNIITTSFPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYP 214 (392)
Q Consensus 145 ~am~nvr~aL~~~Gl~~I~VsT~~s~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldFL~~~~s~~~vNiyP 214 (392)
.+.++++++.+..|+.++++..... .+.|+ .+.+ .++..++.+.|-|+.++.=+
T Consensus 113 ~a~~E~er~v~~~gf~g~~l~p~~~-------~~~~~--------~~~~-~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 113 AAAEELERRVRELGFVGVKLHPVAQ-------GFYPD--------DPRL-YPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHHHHHHHHHHhcCceEEEeccccc-------CCCCC--------ChHH-HHHHHHHHHcCCCEEEEeCC
Confidence 4667777788888887777754433 11121 1223 78999999999999996533
No 100
>PHA01735 hypothetical protein
Probab=21.28 E-value=70 Score=25.26 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhhccccCCCCcEEEEEecccccC
Q 035682 101 ANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFD 134 (392)
Q Consensus 101 ~~~~~A~~Wv~~nI~~~~p~~~I~~I~VGNEvL~ 134 (392)
.+..+|..|+++| .|+++.|-|..|.
T Consensus 33 aDL~AA~d~Lk~N--------dItgv~~~gspl~ 58 (76)
T PHA01735 33 ADLRAACDWLKSN--------DITGVAVDGSPLA 58 (76)
T ss_pred HHHHHHHHHHHHC--------CCceeeCCCCHHH
Confidence 4678999999987 6888888776653
No 101
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=21.26 E-value=4.4e+02 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=16.8
Q ss_pred EEEeccc-ccCCCCCChhHHHHHHHHHHHHHHhcCC
Q 035682 125 LISVGND-IFDTTPDLSPFLLPAVRNVHLALHDLGI 159 (392)
Q Consensus 125 ~I~VGNE-vL~~~~~~~~~Lv~am~nvr~aL~~~Gl 159 (392)
+|.|+|- ||.++-+ +-...|+++-+.|.+.|.
T Consensus 245 GI~l~nQsVLLkGVN---D~~~~l~~L~~~L~~~gV 277 (417)
T TIGR03820 245 GIPLGNQSVLLAGVN---DCPRIMKKLVHKLVANRV 277 (417)
T ss_pred CCEEEeeceEECCcC---CCHHHHHHHHHHHHHCCC
Confidence 4566664 4455422 223445666666666654
No 102
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.95 E-value=3.9e+02 Score=27.49 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCcceeeccCCcccccCCCCCccccccccCCCccccCCCCCcccchhHHHHHHHHHHHHHHhCC----CC
Q 035682 195 KPLLQFLEDTNSSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFRDDLITGVRYTNLFDVMVDAVISAMAVAGH----EN 270 (392)
Q Consensus 195 ~~~ldFL~~~~s~~~vNiyPyf~~~~~~~i~l~yA~f~~~~~~~~dd~~~~~~Y~nlfda~vdav~~a~~~~g~----~~ 270 (392)
+.+++.|.+.|=-++++++|+...... +|. .++... ..++ ++
T Consensus 86 ~~~~~~l~~~G~~~~~~~~P~v~~~~~-----~~~---------------------~~~~~~--------~~~~~v~~~~ 131 (441)
T PF01055_consen 86 KQMIDELHDQGIKVVLWVHPFVSNDSP-----DYE---------------------NYDEAK--------EKGYLVKNPD 131 (441)
T ss_dssp HHHHHHHHHTT-EEEEEEESEEETTTT-----B-H---------------------HHHHHH--------HTT-BEBCTT
T ss_pred HHHHHhHhhCCcEEEEEeecccCCCCC-----cch---------------------hhhhHh--------hcCceeeccc
Confidence 779999999999999999998653211 111 121111 1221 22
Q ss_pred ccEEEeeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCccccEEEEEe
Q 035682 271 IPVIVAETGWPSSGADASEVDATPALAEMYLKGLVAHLKSGMGSPLRREGVAEAYVYEL 329 (392)
Q Consensus 271 ~~VvVtETGWPS~G~~~~~~~aS~~na~~y~~~li~~~~~~~Gtp~rp~~~~~~y~Fe~ 329 (392)
-...+++. ||-.+.- ..-+-.+++.++++.++.+.+. .+++.++..+
T Consensus 132 g~~~~~~~-w~g~~~~---~Dftnp~a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 132 GSPYIGRV-WPGKGGF---IDFTNPEARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp SSB-EEEE-TTEEEEE---B-TTSHHHHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred CCcccccc-cCCcccc---cCCCChhHHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 35677777 9854421 2345566888888888877642 2678888876
No 103
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.89 E-value=3.3e+02 Score=22.65 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCeeeEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHcCCCCeEEe
Q 035682 25 RPLIGVTYAPPILAPTIANPHPPPPPPPDRVASIVTSLNIPAVRL 69 (392)
Q Consensus 25 ~~~~GvnYg~py~~~~~~~~~~~nlps~~~v~~llks~~i~~VRl 69 (392)
...+-|+-. +.+...++.+++.+.|+.++|..-++
T Consensus 31 ~pAvqIs~~----------~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 31 DPAVQISAS----------SAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCcEEEecC----------CCCccCChHHHHHHHHHHCCCCcceE
Confidence 445666665 44556788889999999988764443
No 104
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.81 E-value=4.7e+02 Score=26.38 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 141 PFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 141 ~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
+......+.+.+.|.++||.+..+++
T Consensus 212 ~~~~~~~~~~~~~l~~~Gy~~~~~~~ 237 (377)
T PRK08599 212 DLEAEMYEYLMDEMEAHGFHQYEISN 237 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCcEeeeee
Confidence 34455566788999999997665554
No 105
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.72 E-value=3.2e+02 Score=27.55 Aligned_cols=107 Identities=8% Similarity=0.048 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCCeEEe--ecCCh-------------H---HHHHHhcCC-----ceEEEcCCCCChhhHhhhHHHHHHH
Q 035682 53 DRVASIVTSLNIPAVRL--PNSDP-------------S---LIRAFAYTN-----TTILLSIPNAFVPTLAANRTLAQRW 109 (392)
Q Consensus 53 ~~v~~llks~~i~~VRl--Y~~d~-------------~---vL~A~~~tg-----ikV~lGV~n~~l~~la~~~~~A~~W 109 (392)
++.++.++..|+++|-+ =+.++ + .++.+++.| +.++.|+|.+...++....+.+.+.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l 178 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVEL 178 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhc
Confidence 46778888777775422 12221 2 334444555 3568899988776665544433221
Q ss_pred HHhhccccCCCCcEEEEEe-cccccCC----C---CCChhHHHHHHHHHHHHHHhcCCCceeeec
Q 035682 110 LYRHVLPFYPRSKISLISV-GNDIFDT----T---PDLSPFLLPAVRNVHLALHDLGIKKIPVST 166 (392)
Q Consensus 110 v~~nI~~~~p~~~I~~I~V-GNEvL~~----~---~~~~~~Lv~am~nvr~aL~~~Gl~~I~VsT 166 (392)
=-.+| .+..+.+ -+-.+.+ + ....+......+..++.|.++||.+..++.
T Consensus 179 ~~~~i-------s~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~ 236 (374)
T PRK05799 179 NPEHI-------SCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISN 236 (374)
T ss_pred CCCEE-------EEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeee
Confidence 00111 1111111 1111111 1 122345566667788999999998776654
No 106
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.69 E-value=1.1e+02 Score=23.85 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=14.0
Q ss_pred hHHHHHHHHH-HHhhhcCCCCCeeeEEeCCC
Q 035682 6 SLAFALLIVL-SLLHSTSSSRPLIGVTYAPP 35 (392)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~GvnYg~p 35 (392)
|.++|+.|+| .+++.-+.+....+-+|++|
T Consensus 5 Si~VLlaLvLIg~fAVqSdag~~y~p~y~~~ 35 (71)
T PF04202_consen 5 SIAVLLALVLIGSFAVQSDAGYYYYPGYNAP 35 (71)
T ss_pred hHHHHHHHHHHhhheeeecCccccCCCCCCC
Confidence 4444444444 44443444444456666644
No 107
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.51 E-value=6.1e+02 Score=25.28 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=23.5
Q ss_pred HHHHHcC-CCCeEEeec---------CChHHHHHHhcCCceEEEcCCC
Q 035682 56 ASIVTSL-NIPAVRLPN---------SDPSLIRAFAYTNTTILLSIPN 93 (392)
Q Consensus 56 ~~llks~-~i~~VRlY~---------~d~~vL~A~~~tgikV~lGV~n 93 (392)
++.+++. .++++|+.. .+.++++.++++|.++.+++--
T Consensus 159 l~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~ 206 (321)
T TIGR03822 159 MARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHA 206 (321)
T ss_pred HHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecC
Confidence 3444443 256677754 1357778888888777777753
No 108
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=20.41 E-value=5.1e+02 Score=26.99 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=49.6
Q ss_pred HHHHHHhcCCceEEEcCCCC--------C--------hhhHhhh-HHHHHHHHHhhcccc-CCCCcEEEEEecccccCC-
Q 035682 75 SLIRAFAYTNTTILLSIPNA--------F--------VPTLAAN-RTLAQRWLYRHVLPF-YPRSKISLISVGNDIFDT- 135 (392)
Q Consensus 75 ~vL~A~~~tgikV~lGV~n~--------~--------l~~la~~-~~~A~~Wv~~nI~~~-~p~~~I~~I~VGNEvL~~- 135 (392)
.+|+++++.|++.+++.-|+ . ...+..+ .++-..-+.+-+..| --+..|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 57888889999988876442 0 0011111 111111111111111 024689999999999865
Q ss_pred ---C----CCChhHHHHHHHHHHHHHHhcCCC-ceeeecccccceee
Q 035682 136 ---T----PDLSPFLLPAVRNVHLALHDLGIK-KIPVSTTFSFFNII 174 (392)
Q Consensus 136 ---~----~~~~~~Lv~am~nvr~aL~~~Gl~-~I~VsT~~s~~~vl 174 (392)
. ..+.++....|+.++.+|++.||+ +|-++.+-. ++.+
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~-~~~l 233 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGD-WEYL 233 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESS-GGGG
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhh-HHHH
Confidence 1 135678899999999999999997 465555544 4444
Done!