BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035684
         (38 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
           GN=alkbh8 PE=2 SV=2
          Length = 628

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 4   DTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQK 38
           +  + + S R SFTFRKVR  PC C FP  CDSQ+
Sbjct: 317 ELTLSKRSTRTSFTFRKVRHSPCDCAFPSECDSQQ 351


>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8
           PE=2 SV=1
          Length = 664

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 2   VNDTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQ 37
           V D  + +   R SFTFRKVR+ PC C +P  CDSQ
Sbjct: 317 VEDLTLNKRGIRTSFTFRKVRQTPCNCSYPLVCDSQ 352


>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis
           GN=ALKBH8 PE=2 SV=1
          Length = 664

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 2   VNDTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQK 38
           V D  + +   R SFTFRKVR+ PC C +P  CDSQ+
Sbjct: 317 VGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQR 353


>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens
           GN=ALKBH8 PE=1 SV=2
          Length = 664

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 2   VNDTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQK 38
           V D  + +   R SFTFRKVR+ PC C +P  CDSQ+
Sbjct: 317 VGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQR 353


>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus
           GN=Alkbh8 PE=2 SV=1
          Length = 664

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 2   VNDTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQK 38
           + D  + +   R SFTFRKVR  PC C +   CD Q+
Sbjct: 317 IGDLTLSKRGMRTSFTFRKVRRMPCNCSYSSVCDRQR 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,754,619
Number of Sequences: 539616
Number of extensions: 196163
Number of successful extensions: 346
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 5
length of query: 38
length of database: 191,569,459
effective HSP length: 12
effective length of query: 26
effective length of database: 185,094,067
effective search space: 4812445742
effective search space used: 4812445742
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)