Query 035684
Match_columns 38
No_of_seqs 90 out of 109
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 97.6 4.1E-05 8.8E-10 51.5 2.6 24 9-32 292-315 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.0 0.018 3.9E-07 33.6 2.0 12 8-19 183-194 (194)
3 PRK15401 alpha-ketoglutarate-d 92.6 0.084 1.8E-06 33.8 1.7 11 11-21 203-213 (213)
4 KOG3200 Uncharacterized conser 86.5 0.66 1.4E-05 30.6 2.3 14 9-22 202-215 (224)
5 PF03171 2OG-FeII_Oxy: 2OG-Fe( 48.2 17 0.00038 18.9 1.8 10 10-19 86-95 (98)
6 PF14467 DUF4426: Domain of un 40.0 26 0.00057 20.9 1.9 19 7-25 63-81 (122)
7 PRK05338 rplS 50S ribosomal pr 37.3 35 0.00076 20.2 2.1 17 8-24 50-66 (116)
8 TIGR01024 rplS_bact ribosomal 35.7 42 0.00091 19.8 2.3 17 8-24 50-66 (113)
9 PF12677 DUF3797: Domain of un 34.8 21 0.00045 18.8 0.8 11 17-31 37-47 (49)
10 PF14041 Lipoprotein_21: LppP/ 32.3 75 0.0016 17.2 2.8 22 7-28 51-72 (89)
11 PF14570 zf-RING_4: RING/Ubox 32.0 17 0.00037 18.7 0.2 8 24-31 16-23 (48)
12 PF11811 DUF3331: Domain of un 30.2 77 0.0017 18.4 2.7 27 5-33 18-44 (96)
13 PF05374 Mu-conotoxin: Mu-Cono 29.1 27 0.00058 15.7 0.5 10 28-37 4-13 (22)
14 CHL00084 rpl19 ribosomal prote 28.7 63 0.0014 19.2 2.2 17 8-24 54-70 (117)
15 PLN02318 phosphoribulokinase/u 28.1 71 0.0015 24.1 2.8 21 5-25 298-319 (656)
16 PF01245 Ribosomal_L19: Riboso 27.0 75 0.0016 18.5 2.3 17 8-24 50-66 (113)
17 TIGR01333 cyt_b559_beta cytoch 25.5 32 0.00069 17.7 0.5 6 16-21 14-19 (43)
18 PF05806 Noggin: Noggin; Inte 23.1 31 0.00068 22.2 0.2 14 19-32 157-174 (219)
19 PF06373 CART: Cocaine and amp 22.7 51 0.0011 18.6 1.0 11 26-36 57-67 (73)
20 CHL00039 psbF photosystem II p 21.3 44 0.00095 16.9 0.5 6 16-21 10-15 (39)
21 PRK02561 psbF cytochrome b559 21.0 44 0.00095 17.3 0.5 7 15-21 14-20 (44)
22 PF09244 DUF1964: Domain of un 20.9 69 0.0015 17.8 1.3 10 13-22 13-22 (68)
23 PF05428 CRF-BP: Corticotropin 20.2 97 0.0021 21.5 2.2 21 7-27 163-184 (311)
24 COG4937 Predicted regulatory d 20.2 68 0.0015 20.6 1.3 19 8-26 124-143 (171)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=4.1e-05 Score=51.54 Aligned_cols=24 Identities=46% Similarity=0.982 Sum_probs=22.7
Q ss_pred cCCCeEEEEEEeeecCceecCCcc
Q 035684 9 RASRRVSFTFRKVREGPCRCKFPQ 32 (38)
Q Consensus 9 ~R~~R~S~TfRkvR~~~C~C~~~~ 32 (38)
.|..|+|+||||+|..+|.|+++.
T Consensus 292 ~~~kRisitfrki~~~~~~~~~~~ 315 (323)
T KOG4176|consen 292 SRNKRISITFRKIRPDPCFCEPPP 315 (323)
T ss_pred CCCceEEEEEEEeccCCCCCCCCC
Confidence 689999999999999999999985
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.04 E-value=0.018 Score=33.60 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=8.8
Q ss_pred EcCCCeEEEEEE
Q 035684 8 RRASRRVSFTFR 19 (38)
Q Consensus 8 ~~R~~R~S~TfR 19 (38)
..++.|+|||||
T Consensus 183 ~~~~~RislTfR 194 (194)
T PF13532_consen 183 YVRGRRISLTFR 194 (194)
T ss_dssp EE-S-EEEEEEE
T ss_pred cCCCCEEEEEeC
Confidence 468899999998
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=92.56 E-value=0.084 Score=33.77 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=9.5
Q ss_pred CCeEEEEEEee
Q 035684 11 SRRVSFTFRKV 21 (38)
Q Consensus 11 ~~R~S~TfRkv 21 (38)
+.|+|||||++
T Consensus 203 ~~RINLTFR~~ 213 (213)
T PRK15401 203 ECRINLTFRKA 213 (213)
T ss_pred CCeEEEEeEcC
Confidence 47999999985
No 4
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=0.66 Score=30.62 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=11.7
Q ss_pred cCCCeEEEEEEeee
Q 035684 9 RASRRVSFTFRKVR 22 (38)
Q Consensus 9 ~R~~R~S~TfRkvR 22 (38)
-|+.|||||+|.|-
T Consensus 202 vr~tRvSLTiR~VP 215 (224)
T KOG3200|consen 202 VRQTRVSLTIRLVP 215 (224)
T ss_pred eecceeEEEEecch
Confidence 34999999999873
No 5
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=48.17 E-value=17 Score=18.87 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=7.8
Q ss_pred CCCeEEEEEE
Q 035684 10 ASRRVSFTFR 19 (38)
Q Consensus 10 R~~R~S~TfR 19 (38)
.+.|+|++|.
T Consensus 86 ~~~R~s~~~f 95 (98)
T PF03171_consen 86 EGERYSLTFF 95 (98)
T ss_dssp TS-EEEEEEE
T ss_pred CCCEEEEEEE
Confidence 6899999994
No 6
>PF14467 DUF4426: Domain of unknown function (DUF4426); PDB: 3UC2_D.
Probab=39.99 E-value=26 Score=20.90 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=10.9
Q ss_pred EEcCCCeEEEEEEeeecCc
Q 035684 7 IRRASRRVSFTFRKVREGP 25 (38)
Q Consensus 7 ~~~R~~R~S~TfRkvR~~~ 25 (38)
----+....|+||.|++|.
T Consensus 63 ~nL~gq~~~L~FreI~Eg~ 81 (122)
T PF14467_consen 63 RNLLGQQRTLEFREIREGD 81 (122)
T ss_dssp E-TT--EEEE--EEEEETT
T ss_pred eccccceeeeeEEEEecCC
Confidence 3345678899999999874
No 7
>PRK05338 rplS 50S ribosomal protein L19; Provisional
Probab=37.31 E-value=35 Score=20.24 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||.|++-.|
T Consensus 50 ~~~G~~~tftvRki~~g 66 (116)
T PRK05338 50 RGRGLNETFTVRKISYG 66 (116)
T ss_pred eCCCCCceEEEEEcccC
Confidence 56788999999999765
No 8
>TIGR01024 rplS_bact ribosomal protein L19, bacterial type. This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.
Probab=35.70 E-value=42 Score=19.81 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.1
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||.|++-+|
T Consensus 50 ~~~G~~~tftvR~i~~g 66 (113)
T TIGR01024 50 RGGGIGETFTVRKISYG 66 (113)
T ss_pred eCCCCceEEEEEEeccC
Confidence 56688999999999765
No 9
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=34.79 E-value=21 Score=18.78 Aligned_cols=11 Identities=45% Similarity=1.379 Sum_probs=8.5
Q ss_pred EEEeeecCceecCCc
Q 035684 17 TFRKVREGPCRCKFP 31 (38)
Q Consensus 17 TfRkvR~~~C~C~~~ 31 (38)
||++. |.|+|.
T Consensus 37 tfkRt----CkCGfn 47 (49)
T PF12677_consen 37 TFKRT----CKCGFN 47 (49)
T ss_pred ceeee----eccccc
Confidence 67776 999884
No 10
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=32.33 E-value=75 Score=17.19 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=17.4
Q ss_pred EEcCCCeEEEEEEeeecCceec
Q 035684 7 IRRASRRVSFTFRKVREGPCRC 28 (38)
Q Consensus 7 ~~~R~~R~S~TfRkvR~~~C~C 28 (38)
+...+..|.++||+.+.+...|
T Consensus 51 ~~~~~~~V~V~Y~~~~~~d~~c 72 (89)
T PF14041_consen 51 IRSTDDTVTVQYRWYKPDDPNC 72 (89)
T ss_pred EeeCCCEEEEEEEeCCCCCCcc
Confidence 4567788999999998886544
No 11
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=32.01 E-value=17 Score=18.73 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=4.7
Q ss_pred CceecCCc
Q 035684 24 GPCRCKFP 31 (38)
Q Consensus 24 ~~C~C~~~ 31 (38)
.||+|+|.
T Consensus 16 ~PC~Cgf~ 23 (48)
T PF14570_consen 16 YPCECGFQ 23 (48)
T ss_dssp -SSTTS--
T ss_pred ccCcCCCc
Confidence 58999986
No 12
>PF11811 DUF3331: Domain of unknown function (DUF3331); InterPro: IPR021769 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.
Probab=30.22 E-value=77 Score=18.40 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=20.4
Q ss_pred eeEEcCCCeEEEEEEeeecCceecCCccc
Q 035684 5 TVIRRASRRVSFTFRKVREGPCRCKFPQY 33 (38)
Q Consensus 5 ~t~~~R~~R~S~TfRkvR~~~C~C~~~~~ 33 (38)
..+..|..-.+++.+|. .||.|-|-++
T Consensus 18 I~vlEr~S~~t~~V~W~--D~~~c~YgeQ 44 (96)
T PF11811_consen 18 IRVLERPSDTTLSVSWS--DPTRCHYGEQ 44 (96)
T ss_pred EEEEEecCCCEEEEEEE--CCCCcCcCCc
Confidence 45677877888999887 7788887653
No 13
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=29.13 E-value=27 Score=15.75 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=7.9
Q ss_pred cCCccccccC
Q 035684 28 CKFPQYCDSQ 37 (38)
Q Consensus 28 C~~~~~CDs~ 37 (38)
|.+|..|-|.
T Consensus 4 C~~Pk~CksR 13 (22)
T PF05374_consen 4 CGPPKSCKSR 13 (22)
T ss_dssp SSSSTGGCSG
T ss_pred cCCCcccccc
Confidence 7888888764
No 14
>CHL00084 rpl19 ribosomal protein L19
Probab=28.66 E-value=63 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.1
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||.|++-.|
T Consensus 54 r~~G~~~tftvRki~~g 70 (117)
T CHL00084 54 KNSGLNTTITVRKVFQG 70 (117)
T ss_pred eCCCCCeeEEEEEeccC
Confidence 45778899999999776
No 15
>PLN02318 phosphoribulokinase/uridine kinase
Probab=28.09 E-value=71 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.8
Q ss_pred eeEEcCCCeEEEEEE-eeecCc
Q 035684 5 TVIRRASRRVSFTFR-KVREGP 25 (38)
Q Consensus 5 ~t~~~R~~R~S~TfR-kvR~~~ 25 (38)
+.++.++.+++|||. ||+.||
T Consensus 298 LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 298 LRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred EEEEecCCEEEEEEecccccCC
Confidence 467888999999997 666664
No 16
>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....
Probab=27.03 E-value=75 Score=18.54 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=13.9
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||+|++-.|
T Consensus 50 ~~~g~~ssftlR~~~~g 66 (113)
T PF01245_consen 50 RRRGLNSSFTLRNISQG 66 (113)
T ss_dssp EBSSTSSEEEEEEEETT
T ss_pred ECCCCCeeEEEEEEecC
Confidence 55678899999998765
No 17
>TIGR01333 cyt_b559_beta cytochrome b559, beta subunit. This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II.
Probab=25.45 E-value=32 Score=17.70 Aligned_cols=6 Identities=67% Similarity=1.082 Sum_probs=5.2
Q ss_pred EEEEee
Q 035684 16 FTFRKV 21 (38)
Q Consensus 16 ~TfRkv 21 (38)
||+||+
T Consensus 14 fTvRWl 19 (43)
T TIGR01333 14 FTFRWL 19 (43)
T ss_pred eeeehh
Confidence 799997
No 18
>PF05806 Noggin: Noggin; InterPro: IPR008717 This family consists of the eukaryotic Noggin proteins. Noggin is a glycoprotein that binds bone morphogenetic proteins (BMPs) selectively and, when added to osteoblasts, it opposes the effects of BMPs. It has been found that noggin arrests the differentiation of stromal cells, preventing cellular maturation [].; GO: 0045596 negative regulation of cell differentiation; PDB: 1M4U_A.
Probab=23.10 E-value=31 Score=22.22 Aligned_cols=14 Identities=43% Similarity=1.182 Sum_probs=8.5
Q ss_pred EeeecCcee----cCCcc
Q 035684 19 RKVREGPCR----CKFPQ 32 (38)
Q Consensus 19 RkvR~~~C~----C~~~~ 32 (38)
|+|++|.|. |.+|.
T Consensus 157 RwIk~g~C~s~~SCS~P~ 174 (219)
T PF05806_consen 157 RWIKEGSCVSRRSCSWPP 174 (219)
T ss_dssp SEEEEEE---SS--SSSS
T ss_pred cceeeeeecCCCCcCCCc
Confidence 789999887 76654
No 19
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=22.71 E-value=51 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=4.2
Q ss_pred eecCCcccccc
Q 035684 26 CRCKFPQYCDS 36 (38)
Q Consensus 26 C~C~~~~~CDs 36 (38)
|+|.-...|++
T Consensus 57 CdC~rG~~CN~ 67 (73)
T PF06373_consen 57 CDCPRGTSCNF 67 (73)
T ss_dssp -B--TT--B-T
T ss_pred cCCCCCCchhh
Confidence 99999888875
No 20
>CHL00039 psbF photosystem II protein VI
Probab=21.33 E-value=44 Score=16.87 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=5.2
Q ss_pred EEEEee
Q 035684 16 FTFRKV 21 (38)
Q Consensus 16 ~TfRkv 21 (38)
||+||+
T Consensus 10 fTvRwl 15 (39)
T CHL00039 10 FTVRWL 15 (39)
T ss_pred eEeehh
Confidence 899997
No 21
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=21.01 E-value=44 Score=17.25 Aligned_cols=7 Identities=43% Similarity=0.515 Sum_probs=5.6
Q ss_pred EEEEEee
Q 035684 15 SFTFRKV 21 (38)
Q Consensus 15 S~TfRkv 21 (38)
-||+||+
T Consensus 14 IfTvRwl 20 (44)
T PRK02561 14 IFTVRWL 20 (44)
T ss_pred eeeeehh
Confidence 3899997
No 22
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=20.94 E-value=69 Score=17.84 Aligned_cols=10 Identities=30% Similarity=0.259 Sum_probs=7.1
Q ss_pred eEEEEEEeee
Q 035684 13 RVSFTFRKVR 22 (38)
Q Consensus 13 R~S~TfRkvR 22 (38)
=.||||+|.-
T Consensus 13 dtSitf~W~g 22 (68)
T PF09244_consen 13 DTSITFTWTG 22 (68)
T ss_dssp TTEEEEEEE-
T ss_pred CcEEEEEEec
Confidence 3589999864
No 23
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=20.18 E-value=97 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=15.9
Q ss_pred EEcCCCeEEEEEEeeecC-cee
Q 035684 7 IRRASRRVSFTFRKVREG-PCR 27 (38)
Q Consensus 7 ~~~R~~R~S~TfRkvR~~-~C~ 27 (38)
|..++.=.++|+|++++. ||+
T Consensus 163 ip~~GsgFt~~vR~~~Np~PCN 184 (311)
T PF05428_consen 163 IPSPGSGFTLTVRFIKNPFPCN 184 (311)
T ss_pred ecCCCCceEEEEEeCCCCCCce
Confidence 345666688999999886 786
No 24
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=68 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=13.3
Q ss_pred EcCCCeEEEEEEeeecC-ce
Q 035684 8 RRASRRVSFTFRKVREG-PC 26 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~-~C 26 (38)
++-+-|.|+|||-.--+ .|
T Consensus 124 i~ede~~siT~Ri~~f~~dc 143 (171)
T COG4937 124 IEEDEYKSITFRIYGFNKDC 143 (171)
T ss_pred CCCCceeeEEEEEEEeChhh
Confidence 44455999999976555 45
Done!