Query 035684
Match_columns 38
No_of_seqs 90 out of 109
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tht_A Alkylated DNA repair pr 99.6 1.7E-16 5.7E-21 103.7 4.7 36 3-38 294-329 (345)
2 3i3q_A Alpha-ketoglutarate-dep 96.1 0.0024 8.2E-08 39.1 2.0 16 10-25 191-206 (211)
3 2iuw_A Alkylated repair protei 96.1 0.0027 9.3E-08 38.9 2.0 16 9-24 217-232 (238)
4 3s57_A Alpha-ketoglutarate-dep 95.4 0.0072 2.5E-07 36.4 2.0 12 10-21 191-202 (204)
5 2ftc_K 39S ribosomal protein L 45.1 19 0.00064 20.1 2.6 17 8-24 34-50 (98)
6 1p1p_A AA-conotoxin PIVA; neur 39.0 9.7 0.00033 17.0 0.6 13 24-36 12-25 (26)
7 1hy9_A Cocaine and amphetamine 37.0 19 0.00067 17.6 1.6 11 26-36 25-35 (41)
8 1r9i_A MU-conotoxin PIIIA; cys 35.9 15 0.00051 16.5 1.0 11 28-38 5-15 (26)
9 3r8s_P 50S ribosomal protein L 35.0 29 0.00098 19.8 2.4 17 8-24 50-66 (114)
10 3v2d_T 50S ribosomal protein L 34.9 28 0.00095 20.8 2.4 17 8-24 53-69 (146)
11 2zjr_M 50S ribosomal protein L 32.1 21 0.00071 21.8 1.5 17 8-24 58-74 (166)
12 3uc2_A Hypothetical protein wi 31.8 19 0.00065 21.3 1.3 17 9-25 81-97 (139)
13 2a25_A Ubiquitin ligase SIAH1; 24.7 22 0.00074 20.9 0.6 14 24-37 35-49 (193)
14 2gia_B MRP1, mitochondrial RNA 24.5 15 0.0005 22.8 -0.1 15 8-22 59-73 (187)
15 1aq5_A Matrilin-1, CMP, cartil 20.5 28 0.00097 17.3 0.5 8 22-29 5-12 (47)
No 1
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.64 E-value=1.7e-16 Score=103.68 Aligned_cols=36 Identities=50% Similarity=1.031 Sum_probs=33.4
Q ss_pred CCeeEEcCCCeEEEEEEeeecCceecCCccccccCC
Q 035684 3 NDTVIRRASRRVSFTFRKVREGPCRCKFPQYCDSQK 38 (38)
Q Consensus 3 ~~~t~~~R~~R~S~TfRkvR~~~C~C~~~~~CDs~~ 38 (38)
++.++++|+.|||||||+||++||+|+||++||||+
T Consensus 294 ~~~~~~~r~~RiSlT~R~v~~~~c~C~~~~~cd~~~ 329 (345)
T 3tht_A 294 GDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQR 329 (345)
T ss_dssp SCEEEEECCCEEEEEEECBCSSCCCCSCTTTCTTTT
T ss_pred CCceeccCCCEEEEEEEecCCCCcCCCCCCcccCCC
Confidence 346899999999999999999999999999999985
No 2
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=96.15 E-value=0.0024 Score=39.11 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.9
Q ss_pred CCCeEEEEEEeeecCc
Q 035684 10 ASRRVSFTFRKVREGP 25 (38)
Q Consensus 10 R~~R~S~TfRkvR~~~ 25 (38)
++.|+|||||+++.++
T Consensus 191 ~~~RIsLTFR~~~~~~ 206 (211)
T 3i3q_A 191 IDCRYNLTFRQAGKKE 206 (211)
T ss_dssp BTCEEEEEEECCSCC-
T ss_pred CCCEEEEEeeeccCCc
Confidence 5679999999998654
No 3
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=96.09 E-value=0.0027 Score=38.93 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.2
Q ss_pred cCCCeEEEEEEeeecC
Q 035684 9 RASRRVSFTFRKVREG 24 (38)
Q Consensus 9 ~R~~R~S~TfRkvR~~ 24 (38)
.++.|+|||||+|..+
T Consensus 217 ~~~~RIsLTfR~v~~~ 232 (238)
T 2iuw_A 217 SREPRVNLTFRTVYPD 232 (238)
T ss_dssp CCCCEEEEEEECCCC-
T ss_pred CCCCEEEEEeeecccc
Confidence 3789999999999764
No 4
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=95.45 E-value=0.0072 Score=36.36 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=10.7
Q ss_pred CCCeEEEEEEee
Q 035684 10 ASRRVSFTFRKV 21 (38)
Q Consensus 10 R~~R~S~TfRkv 21 (38)
++.|+|||||+|
T Consensus 191 ~~~RislTFR~i 202 (204)
T 3s57_A 191 LAPRVNLTFRKI 202 (204)
T ss_dssp CSCEEEEEEECB
T ss_pred CCCEEEEEeeee
Confidence 478999999997
No 5
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=45.06 E-value=19 Score=20.09 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.1
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++.+-|||.|++-.|
T Consensus 34 ~~~G~~~tftvRki~~g 50 (98)
T 2ftc_K 34 SGRGLGATFILRNVIEG 50 (98)
T ss_pred ECCCCCcEEEEEEeccC
Confidence 55678899999999776
No 6
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=38.99 E-value=9.7 Score=17.05 Aligned_cols=13 Identities=46% Similarity=1.375 Sum_probs=9.5
Q ss_pred Cceec-CCcccccc
Q 035684 24 GPCRC-KFPQYCDS 36 (38)
Q Consensus 24 ~~C~C-~~~~~CDs 36 (38)
.||.| +-|.+||.
T Consensus 12 hpc~c~~rp~yc~~ 25 (26)
T 1p1p_A 12 HPCSCKDRPSYCGQ 25 (26)
T ss_dssp CTTTSTTCCGGGCC
T ss_pred cccccCCCCCccCc
Confidence 36778 56888884
No 7
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=37.01 E-value=19 Score=17.61 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=9.8
Q ss_pred eecCCcccccc
Q 035684 26 CRCKFPQYCDS 36 (38)
Q Consensus 26 C~C~~~~~CDs 36 (38)
|+|+-...|++
T Consensus 25 C~C~rg~~Cn~ 35 (41)
T 1hy9_A 25 CDCPRGTSCNS 35 (41)
T ss_dssp CBCCTTCCBCT
T ss_pred cCCCCCCcchh
Confidence 99999999875
No 8
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=35.89 E-value=15 Score=16.48 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=8.7
Q ss_pred cCCccccccCC
Q 035684 28 CKFPQYCDSQK 38 (38)
Q Consensus 28 C~~~~~CDs~~ 38 (38)
|+||..|-|.+
T Consensus 5 C~~Pk~CksR~ 15 (26)
T 1r9i_A 5 CGFPKSCRSRQ 15 (26)
T ss_dssp TTSTTGGGSTT
T ss_pred cCCCCcccccc
Confidence 78999988753
No 9
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=34.99 E-value=29 Score=19.84 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.6
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||.|++-.|
T Consensus 50 ~~~G~~~tftvRki~~g 66 (114)
T 3r8s_P 50 RNRGLHSAFTVRKISNG 66 (114)
T ss_dssp ECCGGGCEEEEEEEETT
T ss_pred ECCCCCeEEEEEEecCC
Confidence 34668899999999776
No 10
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=34.91 E-value=28 Score=20.82 Aligned_cols=17 Identities=47% Similarity=0.642 Sum_probs=13.8
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++..-|||.|+|-.|
T Consensus 53 r~~Gl~~tFtVRkis~g 69 (146)
T 3v2d_T 53 RRNGFNTTFTVRKVSYG 69 (146)
T ss_dssp ECCGGGCEEEEEEEETT
T ss_pred ECCCCCeEEEEEEecCC
Confidence 34678899999999776
No 11
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=32.10 E-value=21 Score=21.76 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.7
Q ss_pred EcCCCeEEEEEEeeecC
Q 035684 8 RRASRRVSFTFRKVREG 24 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR~~ 24 (38)
..++.+-|||.|+|-.|
T Consensus 58 r~~Gl~sTFTVRkis~G 74 (166)
T 2zjr_M 58 NGSGSRKSFTVRKISFG 74 (166)
T ss_dssp CCCGGGCEEEEEEEETT
T ss_pred eCCCCCcEEEEEEecCC
Confidence 34567899999999776
No 12
>3uc2_A Hypothetical protein with immunoglobulin-like FOL; structural genomics, joint center for structural genomics; 2.09A {Pseudomonas aeruginosa}
Probab=31.79 E-value=19 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.6
Q ss_pred cCCCeEEEEEEeeecCc
Q 035684 9 RASRRVSFTFRKVREGP 25 (38)
Q Consensus 9 ~R~~R~S~TfRkvR~~~ 25 (38)
--+....|+||.|+.|.
T Consensus 81 L~gq~~~L~FreI~Eg~ 97 (139)
T 3uc2_A 81 LTGKVIPLEFRRVSEEG 97 (139)
T ss_dssp TTCCEEEECCEEEEETT
T ss_pred CcCCeEEeeEEEEeeCC
Confidence 34667899999999874
No 13
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=24.71 E-value=22 Score=20.85 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=9.7
Q ss_pred CceecCCc-cccccC
Q 035684 24 GPCRCKFP-QYCDSQ 37 (38)
Q Consensus 24 ~~C~C~~~-~~CDs~ 37 (38)
.||.|++| ..|+.+
T Consensus 35 ~p~~Cp~~g~~C~~~ 49 (193)
T 2a25_A 35 RPYSCPCPGASCKWQ 49 (193)
T ss_dssp -CEECCCC--CCCCE
T ss_pred CCccCCCCCCCCcCC
Confidence 47999998 468764
No 14
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=24.47 E-value=15 Score=22.84 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=12.3
Q ss_pred EcCCCeEEEEEEeee
Q 035684 8 RRASRRVSFTFRKVR 22 (38)
Q Consensus 8 ~~R~~R~S~TfRkvR 22 (38)
.-|.+|+|+-||.|-
T Consensus 59 FD~dRRiS~R~RHvD 73 (187)
T 2gia_B 59 FDADRRISVRLRHVD 73 (187)
T ss_dssp BCGGGCEEEECCHHH
T ss_pred ccccceeeEEeeecc
Confidence 458899999999773
No 15
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=20.53 E-value=28 Score=17.28 Aligned_cols=8 Identities=63% Similarity=1.593 Sum_probs=6.1
Q ss_pred ecCceecC
Q 035684 22 REGPCRCK 29 (38)
Q Consensus 22 R~~~C~C~ 29 (38)
-+.||+|.
T Consensus 5 ~edpC~CE 12 (47)
T 1aq5_A 5 EEDPCECK 12 (47)
T ss_dssp SSCSSCTT
T ss_pred ccCchhhH
Confidence 45789996
Done!