Query 035689
Match_columns 95
No_of_seqs 112 out of 594
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 99.9 1.9E-28 4.2E-33 189.4 6.8 86 1-95 167-252 (387)
2 PF13839 PC-Esterase: GDSL/SGN 99.2 9.5E-12 2E-16 89.1 4.6 70 1-95 67-140 (263)
3 cd01842 SGNH_hydrolase_like_5 56.4 6 0.00013 28.4 1.1 10 46-55 52-61 (183)
4 PF00919 UPF0004: Uncharacteri 49.8 9.7 0.00021 24.2 1.2 11 43-53 35-45 (98)
5 PF12367 PFO_beta_C: Pyruvate 36.6 20 0.00043 21.5 1.0 32 50-93 7-38 (67)
6 PRK08955 glyceraldehyde-3-phos 29.9 33 0.00072 26.5 1.5 15 41-55 85-99 (334)
7 PF14453 ThiS-like: ThiS-like 29.2 43 0.00093 19.5 1.6 11 42-52 26-36 (57)
8 PF11810 DUF3332: Domain of un 26.5 24 0.00052 25.0 0.2 14 44-57 61-74 (176)
9 PF03720 UDPG_MGDP_dh_C: UDP-g 25.4 38 0.00083 21.2 1.0 20 39-58 61-80 (106)
10 KOG4530 Predicted flavoprotein 23.7 35 0.00076 24.5 0.6 28 28-55 70-97 (199)
11 PRK15425 gapA glyceraldehyde-3 21.7 56 0.0012 25.3 1.5 12 44-55 89-100 (331)
12 PF00056 Ldh_1_N: lactate/mala 21.7 65 0.0014 21.3 1.6 18 39-56 64-81 (141)
13 PF13454 NAD_binding_9: FAD-NA 20.3 63 0.0014 21.5 1.3 11 44-54 145-155 (156)
14 PRK09739 hypothetical protein; 20.3 54 0.0012 22.7 1.0 24 37-60 72-95 (199)
No 1
>PLN02629 powdery mildew resistance 5
Probab=99.95 E-value=1.9e-28 Score=189.45 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=77.6
Q ss_pred CccEEEEEecccccccccccCCCcceeEEEecCCCchHhhhcCCCcEEEEccCcccccCCCCCCCCCCceeeccCccccC
Q 035689 1 TGTPVQSRWLANANGGELEALGYKEGYRVDVDVPDSTWAKAASFHDILIFNTGHWWWAPAKFDPVKSPMLFFEKDKPVIP 80 (95)
Q Consensus 1 ~n~TV~~yWspfLV~~~~~~~~~~~~~~l~LD~~d~~W~~~w~~~DvlVfntghWw~~~~k~~~~~~~~~~~~~g~~v~~ 80 (95)
+||||+||||||||+++++ .+.+.|+||+++++ +++|+++|||||||||||++++ ..+++.|++.|..+++
T Consensus 167 yN~TV~~ywspfLV~~~~~----~~~~~l~LD~id~~-a~~w~~~DvlVfntghWw~~~~----~~~~~~~~~~g~~~~~ 237 (387)
T PLN02629 167 YGVSISFYKAPYLVDIDAV----QGKRVLKLEEISGN-ANAWRDADVLIFNTGHWWSHQG----SLQGWDYIESGGTYYQ 237 (387)
T ss_pred CCEEEEEEecceEEeeecC----CCceeEEecCcchh-hhhhccCCEEEEeCccccCCCC----eeEEeeeeccCCcccc
Confidence 6999999999999998753 24578999999986 9999999999999999997776 4678899999999999
Q ss_pred CCChHHHHHHHHhcC
Q 035689 81 PVQPNVGLDMVLKHM 95 (95)
Q Consensus 81 ~~~~~~a~r~alrt~ 95 (95)
+|++.+|||+||+||
T Consensus 238 ~~~~~~A~r~al~T~ 252 (387)
T PLN02629 238 DMDRLVALEKALRTW 252 (387)
T ss_pred CccHHHHHHHHHHHH
Confidence 999999999999997
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=99.24 E-value=9.5e-12 Score=89.07 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=54.1
Q ss_pred CccEEEEEecccccccccccCCCcceeEEEecCCCchHhhhcC----CCcEEEEccCcccccCCCCCCCCCCceeeccCc
Q 035689 1 TGTPVQSRWLANANGGELEALGYKEGYRVDVDVPDSTWAKAAS----FHDILIFNTGHWWWAPAKFDPVKSPMLFFEKDK 76 (95)
Q Consensus 1 ~n~TV~~yWspfLV~~~~~~~~~~~~~~l~LD~~d~~W~~~w~----~~DvlVfntghWw~~~~k~~~~~~~~~~~~~g~ 76 (95)
+|+||+|+|+|||++. +|.+++.+++.|. ..||||||+|+||.+.. .++..|+
T Consensus 67 ~~~~~~f~~~p~l~~~--------------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~~---------~~~~~~~ 123 (263)
T PF13839_consen 67 YNVTLSFYWDPFLVDQ--------------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRRS---------GFIEWGD 123 (263)
T ss_pred CCeEEEEecccccccc--------------ccccchhhhccccccccCCCEEEEEcchhhhhcc---------hhcccCC
Confidence 5899999999999975 5566645566666 89999999999997654 3444444
Q ss_pred cccCCCChHHHHHHHHhcC
Q 035689 77 PVIPPVQPNVGLDMVLKHM 95 (95)
Q Consensus 77 ~v~~~~~~~~a~r~alrt~ 95 (95)
. .+++...+|+..|+++
T Consensus 124 ~--~~~~~~~~y~~~l~~~ 140 (263)
T PF13839_consen 124 N--KEINPLEAYRNRLRTL 140 (263)
T ss_pred C--cCcchHHHHHHHHHHH
Confidence 4 7778889999998864
No 3
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.35 E-value=6 Score=28.39 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=9.9
Q ss_pred cEEEEccCcc
Q 035689 46 DILIFNTGHW 55 (95)
Q Consensus 46 DvlVfntghW 55 (95)
||+|||+|-|
T Consensus 52 DVIi~Ns~LW 61 (183)
T cd01842 52 DLVIMNSCLW 61 (183)
T ss_pred eEEEEeccee
Confidence 9999999999
No 4
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=49.81 E-value=9.7 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=9.3
Q ss_pred CCCcEEEEccC
Q 035689 43 SFHDILIFNTG 53 (95)
Q Consensus 43 ~~~DvlVfntg 53 (95)
..||++|+||=
T Consensus 35 e~AD~iiiNTC 45 (98)
T PF00919_consen 35 EEADVIIINTC 45 (98)
T ss_pred ccCCEEEEEcC
Confidence 57899999983
No 5
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=36.62 E-value=20 Score=21.49 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=19.7
Q ss_pred EccCcccccCCCCCCCCCCceeeccCccccCCCChHHHHHHHHh
Q 035689 50 FNTGHWWWAPAKFDPVKSPMLFFEKDKPVIPPVQPNVGLDMVLK 93 (95)
Q Consensus 50 fntghWw~~~~k~~~~~~~~~~~~~g~~v~~~~~~~~a~r~alr 93 (95)
+||+.|+ +.. +|.-+. -...-+...|+++|+.
T Consensus 7 ~nT~~wY-~~r---------vy~l~e--~~Dp~d~~~A~~~a~e 38 (67)
T PF12367_consen 7 INTYDWY-KER---------VYKLDE--DHDPSDREAAMEKARE 38 (67)
T ss_pred cchHHHH-HHh---------eEECCC--CCCchhHHHHHHHHHh
Confidence 4888888 433 444311 2344577888888875
No 6
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=29.92 E-value=33 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=13.0
Q ss_pred hcCCCcEEEEccCcc
Q 035689 41 AASFHDILIFNTGHW 55 (95)
Q Consensus 41 ~w~~~DvlVfntghW 55 (95)
.|.++||++|+||.-
T Consensus 85 ~w~gvDiVle~tG~~ 99 (334)
T PRK08955 85 DWSGCDVVIEASGVM 99 (334)
T ss_pred CccCCCEEEEccchh
Confidence 356999999999996
No 7
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=29.21 E-value=43 Score=19.51 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=9.6
Q ss_pred cCCCcEEEEcc
Q 035689 42 ASFHDILIFNT 52 (95)
Q Consensus 42 w~~~DvlVfnt 52 (95)
-+++||+|+|.
T Consensus 26 k~~~DI~I~NG 36 (57)
T PF14453_consen 26 KPDADIVILNG 36 (57)
T ss_pred CCCCCEEEEcC
Confidence 46899999999
No 8
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=26.45 E-value=24 Score=24.99 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=12.5
Q ss_pred CCcEEEEccCcccc
Q 035689 44 FHDILIFNTGHWWW 57 (95)
Q Consensus 44 ~~DvlVfntghWw~ 57 (95)
-+|++||||--.|.
T Consensus 61 ~aD~lVfNsIEFWT 74 (176)
T PF11810_consen 61 LADLLVFNSIEFWT 74 (176)
T ss_pred hhhheeeeeeeeec
Confidence 37999999999994
No 9
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=25.43 E-value=38 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=13.5
Q ss_pred hhhcCCCcEEEEccCccccc
Q 035689 39 AKAASFHDILIFNTGHWWWA 58 (95)
Q Consensus 39 ~~~w~~~DvlVfntghWw~~ 58 (95)
....+++|++|+.|.|==++
T Consensus 61 ~~~~~~~D~vvl~t~h~~f~ 80 (106)
T PF03720_consen 61 EEALKGADAVVLATDHDEFR 80 (106)
T ss_dssp HHHHTTESEEEESS--GGGG
T ss_pred HHHhcCCCEEEEEecCHHHh
Confidence 45567999999999875433
No 10
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=23.71 E-value=35 Score=24.46 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=21.8
Q ss_pred EEEecCCCchHhhhcCCCcEEEEccCcc
Q 035689 28 RVDVDVPDSTWAKAASFHDILIFNTGHW 55 (95)
Q Consensus 28 ~l~LD~~d~~W~~~w~~~DvlVfntghW 55 (95)
..+-+..-+.|++.+.++|.+||-|=+-
T Consensus 70 d~y~~~~t~aw~~ki~~aD~ivFvtPqY 97 (199)
T KOG4530|consen 70 DEYYPPVTEAWRQKILEADSIVFVTPQY 97 (199)
T ss_pred cccCcHHHHHHHHHHhhcceEEEecccc
Confidence 3445555678999999999999988654
No 11
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=21.73 E-value=56 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=11.4
Q ss_pred CCcEEEEccCcc
Q 035689 44 FHDILIFNTGHW 55 (95)
Q Consensus 44 ~~DvlVfntghW 55 (95)
++||++++||..
T Consensus 89 gvDiVle~tG~f 100 (331)
T PRK15425 89 GVDVVAEATGLF 100 (331)
T ss_pred CCCEEEEecchh
Confidence 899999999986
No 12
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=21.69 E-value=65 Score=21.35 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.6
Q ss_pred hhhcCCCcEEEEccCccc
Q 035689 39 AKAASFHDILIFNTGHWW 56 (95)
Q Consensus 39 ~~~w~~~DvlVfntghWw 56 (95)
-+..+++||+|+.+|---
T Consensus 64 ~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 64 YEALKDADIVVITAGVPR 81 (141)
T ss_dssp GGGGTTESEEEETTSTSS
T ss_pred ccccccccEEEEeccccc
Confidence 456789999999999753
No 13
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=20.29 E-value=63 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=10.2
Q ss_pred CCcEEEEccCc
Q 035689 44 FHDILIFNTGH 54 (95)
Q Consensus 44 ~~DvlVfntgh 54 (95)
.+|.+|+.+||
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 68999999998
No 14
>PRK09739 hypothetical protein; Provisional
Probab=20.28 E-value=54 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=19.9
Q ss_pred hHhhhcCCCcEEEEccCcccccCC
Q 035689 37 TWAKAASFHDILIFNTGHWWWAPA 60 (95)
Q Consensus 37 ~W~~~w~~~DvlVfntghWw~~~~ 60 (95)
.+.+++..+|.+||.+=-||+...
T Consensus 72 ~~~~~l~~AD~iV~~~P~y~~~~P 95 (199)
T PRK09739 72 QLYSELLEHDALVFVFPLWWYSFP 95 (199)
T ss_pred HHHHHHHhCCEEEEECchhhhcch
Confidence 357889999999999999987544
Done!