Query 035689
Match_columns 95
No_of_seqs 112 out of 594
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dqp_A Oxidoreductase YLBE; al 20.9 1.5E+02 0.0053 18.9 4.4 31 26-56 43-75 (219)
2 2g82_O GAPDH, glyceraldehyde-3 20.7 37 0.0013 25.0 1.4 13 44-56 86-98 (331)
3 3cmc_O GAPDH, glyceraldehyde-3 20.4 41 0.0014 24.7 1.6 13 44-56 88-100 (334)
4 3doc_A Glyceraldehyde 3-phosph 20.2 46 0.0016 24.8 1.8 12 44-55 91-102 (335)
5 3pym_A GAPDH 3, glyceraldehyde 20.0 46 0.0016 24.8 1.8 12 44-55 89-100 (332)
6 3c01_A Surface presentation of 19.3 47 0.0016 17.9 1.3 13 39-51 36-48 (48)
7 3h9e_O Glyceraldehyde-3-phosph 19.2 43 0.0015 25.1 1.4 12 44-55 94-105 (346)
8 3lvf_P GAPDH 1, glyceraldehyde 18.7 51 0.0018 24.6 1.8 12 44-55 91-102 (338)
9 3cpk_A Uncharacterized protein 18.5 50 0.0017 21.8 1.5 24 30-54 73-98 (150)
10 3b1j_A Glyceraldehyde 3-phosph 18.4 55 0.0019 24.1 1.9 13 44-56 91-103 (339)
No 1
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=20.91 E-value=1.5e+02 Score=18.88 Aligned_cols=31 Identities=26% Similarity=0.024 Sum_probs=22.9
Q ss_pred eeEEEecCCC--chHhhhcCCCcEEEEccCccc
Q 035689 26 GYRVDVDVPD--STWAKAASFHDILIFNTGHWW 56 (95)
Q Consensus 26 ~~~l~LD~~d--~~W~~~w~~~DvlVfntghWw 56 (95)
...+..|.-+ +...+..+++|+||.++|.--
T Consensus 43 ~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 43 VKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp EEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred ceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 3456677766 345777899999999998753
No 2
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=20.65 E-value=37 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=11.8
Q ss_pred CCcEEEEccCccc
Q 035689 44 FHDILIFNTGHWW 56 (95)
Q Consensus 44 ~~DvlVfntghWw 56 (95)
++||++++||+.=
T Consensus 86 gvDiV~estG~~~ 98 (331)
T 2g82_O 86 GVGVVIESTGVFT 98 (331)
T ss_dssp TEEEEEECSSSCC
T ss_pred CCCEEEECCCchh
Confidence 7899999999974
No 3
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=20.44 E-value=41 Score=24.72 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.8
Q ss_pred CCcEEEEccCccc
Q 035689 44 FHDILIFNTGHWW 56 (95)
Q Consensus 44 ~~DvlVfntghWw 56 (95)
++||++++|||.=
T Consensus 88 ~vDvV~~atg~~~ 100 (334)
T 3cmc_O 88 GVDIVVESTGRFT 100 (334)
T ss_dssp TCCEEEECSSSCC
T ss_pred ccCEEEECCCchh
Confidence 8999999999974
No 4
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=20.16 E-value=46 Score=24.82 Aligned_cols=12 Identities=33% Similarity=0.279 Sum_probs=11.3
Q ss_pred CCcEEEEccCcc
Q 035689 44 FHDILIFNTGHW 55 (95)
Q Consensus 44 ~~DvlVfntghW 55 (95)
++||+++|||..
T Consensus 91 gvDiVlesTG~f 102 (335)
T 3doc_A 91 NVDIALECTGIF 102 (335)
T ss_dssp TCSEEEECSSSC
T ss_pred CCCEEEEccCcc
Confidence 899999999986
No 5
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=20.04 E-value=46 Score=24.76 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=11.3
Q ss_pred CCcEEEEccCcc
Q 035689 44 FHDILIFNTGHW 55 (95)
Q Consensus 44 ~~DvlVfntghW 55 (95)
++||+++|||..
T Consensus 89 gvDiVlesTG~f 100 (332)
T 3pym_A 89 NVDIAIDSTGVF 100 (332)
T ss_dssp TCSEEEECSSSS
T ss_pred CccEEEEecccc
Confidence 899999999986
No 6
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=19.35 E-value=47 Score=17.85 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=10.4
Q ss_pred hhhcCCCcEEEEc
Q 035689 39 AKAASFHDILIFN 51 (95)
Q Consensus 39 ~~~w~~~DvlVfn 51 (95)
....+.|||+|-|
T Consensus 36 ~~~Vp~AdvVitN 48 (48)
T 3c01_A 36 KSDIENSRLIVAN 48 (48)
T ss_pred HhcCCCCCEeecC
Confidence 4567899999976
No 7
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=19.17 E-value=43 Score=25.09 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=11.3
Q ss_pred CCcEEEEccCcc
Q 035689 44 FHDILIFNTGHW 55 (95)
Q Consensus 44 ~~DvlVfntghW 55 (95)
++||++++||..
T Consensus 94 gvDiVlesTG~f 105 (346)
T 3h9e_O 94 GSPYVVESTGVY 105 (346)
T ss_dssp TSCEEEECSSSC
T ss_pred cccEEEEecccc
Confidence 899999999986
No 8
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=18.69 E-value=51 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=11.3
Q ss_pred CCcEEEEccCcc
Q 035689 44 FHDILIFNTGHW 55 (95)
Q Consensus 44 ~~DvlVfntghW 55 (95)
++||++++||..
T Consensus 91 gvDiVlesTG~f 102 (338)
T 3lvf_P 91 NIDVVLECTGFY 102 (338)
T ss_dssp TCSEEEECSSSC
T ss_pred CCCEEEEccCCc
Confidence 899999999986
No 9
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=18.55 E-value=50 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=9.9
Q ss_pred EecCCCchHhhhcC--CCcEEEEccCc
Q 035689 30 DVDVPDSTWAKAAS--FHDILIFNTGH 54 (95)
Q Consensus 30 ~LD~~d~~W~~~w~--~~DvlVfntgh 54 (95)
.||.++..| ..++ ..|+||+-||.
T Consensus 73 ~~~~~~~~~-~~~p~~~pEvliiGTG~ 98 (150)
T 3cpk_A 73 FLDEPEAGA-GARPANAPEVLLVGTGR 98 (150)
T ss_dssp ----------------CCSEEEEECTT
T ss_pred hcccccccc-ccccCCCCCEEEEcCCC
Confidence 356665553 3344 68999999995
No 10
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=18.39 E-value=55 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.301 Sum_probs=11.7
Q ss_pred CCcEEEEccCccc
Q 035689 44 FHDILIFNTGHWW 56 (95)
Q Consensus 44 ~~DvlVfntghWw 56 (95)
++||++++|||.=
T Consensus 91 ~vDvV~e~tg~~~ 103 (339)
T 3b1j_A 91 DIDLVIESTGVFV 103 (339)
T ss_dssp TCCEEEECSSSCC
T ss_pred CCCEEEECCCccc
Confidence 7999999999974
Done!