Query 035692
Match_columns 154
No_of_seqs 135 out of 686
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 7.8E-38 1.7E-42 249.4 16.3 146 6-151 1-146 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 1.2E-31 2.6E-36 188.6 11.3 94 3-98 1-94 (94)
3 KOG1725 Protein involved in me 100.0 2.3E-31 4.9E-36 207.3 8.8 110 1-112 52-161 (186)
4 COG5052 YOP1 Protein involved 99.9 3.4E-22 7.4E-27 154.0 9.3 102 9-112 61-163 (186)
5 KOG1726 HVA22/DP1 gene product 71.1 46 0.00099 27.1 8.8 77 35-111 97-173 (225)
6 PF14013 MT0933_antitox: MT093 59.6 25 0.00054 21.8 4.2 44 95-138 6-49 (51)
7 CHL00186 psaI photosystem I su 59.1 8.4 0.00018 22.5 1.8 22 1-22 1-22 (36)
8 TIGR03687 pupylate_cterm ubiqu 58.6 27 0.00058 19.9 3.8 29 103-131 3-31 (33)
9 PF02453 Reticulon: Reticulon; 48.0 6 0.00013 29.3 0.0 21 97-117 148-168 (169)
10 COG2832 Uncharacterized protei 38.0 81 0.0018 23.2 4.6 60 44-103 6-65 (119)
11 KOG4304 Transcriptional repres 36.2 1.6E+02 0.0036 24.1 6.7 41 82-122 23-64 (250)
12 PF14975 DUF4512: Domain of un 36.0 22 0.00047 24.8 1.3 16 88-103 13-28 (88)
13 COG2822 Predicted periplasmic 33.4 2.9E+02 0.0063 23.9 7.8 74 45-123 261-335 (376)
14 PF01277 Oleosin: Oleosin; In 30.7 1.6E+02 0.0036 21.5 5.2 28 106-133 90-117 (118)
15 COG2270 Permeases of the major 30.1 2.3E+02 0.005 25.4 7.0 76 12-100 69-146 (438)
16 PRK11427 multidrug efflux syst 30.1 4.9E+02 0.011 24.7 10.5 84 69-153 152-237 (683)
17 PF05396 Phage_T7_Capsid: Phag 28.3 1.2E+02 0.0027 22.4 4.2 22 93-114 20-41 (123)
18 PF10066 DUF2304: Uncharacteri 26.9 2.3E+02 0.005 20.0 10.2 64 12-76 9-72 (115)
19 PF05418 Apo-VLDL-II: Apovitel 26.8 2.1E+02 0.0045 19.4 5.1 29 77-111 11-39 (82)
20 PF02313 Fumarate_red_D: Fumar 26.3 79 0.0017 23.2 2.9 65 1-93 22-86 (118)
21 PF08831 MHCassoc_trimer: Clas 25.7 67 0.0015 21.6 2.2 26 24-49 31-58 (72)
22 KOG4797 Transcriptional regula 23.5 2.9E+02 0.0063 20.1 5.3 21 104-124 45-65 (123)
23 KOG0868 Glutathione S-transfer 23.3 1.3E+02 0.0027 24.2 3.7 33 109-141 118-150 (217)
24 COG4046 Uncharacterized protei 23.2 3.8E+02 0.0082 23.3 6.8 29 124-152 101-129 (368)
25 PF12459 DUF3687: D-Ala-teicho 22.5 71 0.0015 19.2 1.7 26 66-91 15-41 (42)
26 PF08702 Fib_alpha: Fibrinogen 21.8 1.6E+02 0.0035 22.1 4.0 26 94-119 23-48 (146)
27 PRK15362 pathogenicity island 21.5 3.3E+02 0.0072 24.5 6.3 56 83-140 390-445 (473)
28 PF01639 v110: Viral family 11 20.9 14 0.00031 26.7 -1.8 30 14-43 9-38 (110)
29 KOG0365 Beta subunit of farnes 20.7 51 0.0011 28.9 1.1 15 38-52 99-113 (423)
30 COG2839 Uncharacterized protei 20.5 1.8E+02 0.004 22.4 4.0 57 6-62 10-69 (160)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=100.00 E-value=7.8e-38 Score=249.43 Aligned_cols=146 Identities=40% Similarity=0.754 Sum_probs=138.9
Q ss_pred hHHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhccCCcc
Q 035692 6 LSRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWYPKTKG 85 (154)
Q Consensus 6 l~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~P~~~G 85 (154)
+++++.+++|++||||+|||+++++++|.++++.|++|||++|+++++|.+.|++++|+|||+++|++|++||+.|.++|
T Consensus 1 ~~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G 80 (225)
T KOG1726|consen 1 MIRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKG 80 (225)
T ss_pred CeehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCc
Confidence 36789999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCC
Q 035692 86 TTYVYNVLLRPYIAKHEKEIDLNLLKLRIKAREIGLLFWEKAAIYGQTRFFEILQYFSSHSASLPH 151 (154)
Q Consensus 86 A~~iY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 151 (154)
+.+||+++++|++++||++||+.+.+.++++.+.+..+.+++...++..+.+++.....+-..+++
T Consensus 81 ~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~ 146 (225)
T KOG1726|consen 81 ASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQ 146 (225)
T ss_pred cHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999999999999999999999999999999999999998877666666655
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=1.2e-31 Score=188.57 Aligned_cols=94 Identities=35% Similarity=0.818 Sum_probs=89.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhccC
Q 035692 3 GSFLSRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWYPK 82 (154)
Q Consensus 3 ~~~l~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~P~ 82 (154)
++++++++|+++|++||+|+|+|+++++++ ++.++||+||+++|+++++|.+++.+++|+|+|+++|+++++||.+|+
T Consensus 1 ~~~~~~~l~~~i~~~yP~~~s~kal~~~~~--~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~ 78 (94)
T PF03134_consen 1 FGFIARLLCNLIGILYPAYKSFKALKSKDK--KDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQ 78 (94)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCC
Confidence 468899999999999999999999999844 578999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhhhhhhh
Q 035692 83 TKGTTYVYNVLLRPYI 98 (154)
Q Consensus 83 ~~GA~~iY~~~i~P~l 98 (154)
++||+++|+++++|++
T Consensus 79 ~~Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 79 FQGAEYIYDKFIRPFL 94 (94)
T ss_pred CCcHHHHHHHHccccC
Confidence 9999999999999975
No 3
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-31 Score=207.27 Aligned_cols=110 Identities=29% Similarity=0.594 Sum_probs=101.6
Q ss_pred CchhhhHHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Q 035692 1 MMGSFLSRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWY 80 (154)
Q Consensus 1 M~~~~l~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~ 80 (154)
|+.+-.++++|+++|++||+|+|++++|+++++ +.++||+||++||+++++|...+.+++|+|+||++|++|++||.+
T Consensus 52 l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~--dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~l 129 (186)
T KOG1725|consen 52 LLFGSGGPLLCNLIGFLYPAYASVKAIESPSKD--DDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVL 129 (186)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 455667899999999999999999999987664 348999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHhhhhhhhhhchhHHHHHHHHH
Q 035692 81 PKTKGTTYVYNVLLRPYIAKHEKEIDLNLLKL 112 (154)
Q Consensus 81 P~~~GA~~iY~~~i~P~l~~~e~~ID~~l~~~ 112 (154)
|+++||..+|+++++|++.+|..++|+..+..
T Consensus 130 P~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 130 PQFNGAAIIYNHIVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred cCCCCceeeechhhhhhhhhhhhhhhhhhhcc
Confidence 99999999999999999999999999887643
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.87 E-value=3.4e-22 Score=153.98 Aligned_cols=102 Identities=21% Similarity=0.378 Sum_probs=93.8
Q ss_pred HHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhccCCcchhH
Q 035692 9 PILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWYPKTKGTTY 88 (154)
Q Consensus 9 ~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~P~~~GA~~ 88 (154)
++.+++|+..|++.|.+++++.++ .+.+||++||+|+++.+++|.+...+++|+|+|+..|.+|++|+..|+|+||..
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~--~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~ 138 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNF--MDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARI 138 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceee
Confidence 788999999999999999999865 334899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhchhH-HHHHHHHH
Q 035692 89 VYNVLLRPYIAKHEKE-IDLNLLKL 112 (154)
Q Consensus 89 iY~~~i~P~l~~~e~~-ID~~l~~~ 112 (154)
||+++++|.+++|..+ ||+.+.+.
T Consensus 139 IY~~~i~p~~s~~~~~~IektV~~~ 163 (186)
T COG5052 139 IYDDIIAPDVSDHGFRTIEKTVKNG 163 (186)
T ss_pred eHHhhccccccHHHHHHHHHHHHhh
Confidence 9999999999998776 77766543
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=71.13 E-value=46 Score=27.11 Aligned_cols=77 Identities=9% Similarity=-0.036 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhccCCcchhHHHHhhhhhhhhhchhHHHHHHHH
Q 035692 35 EQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWYPKTKGTTYVYNVLLRPYIAKHEKEIDLNLLK 111 (154)
Q Consensus 35 ~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~l~~~e~~ID~~l~~ 111 (154)
++...-+.+|....++..++.+....++|-+.|-.=+..+..|...|+.+++...++.-..|....+...+-+.+.+
T Consensus 97 E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T KOG1726|consen 97 EEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLEN 173 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccchh
Confidence 44566789999999999999999999999999999999999999999999999999999999887776665555554
No 6
>PF14013 MT0933_antitox: MT0933-like antitoxin protein
Probab=59.61 E-value=25 Score=21.84 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=27.5
Q ss_pred hhhhhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035692 95 RPYIAKHEKEIDLNLLKLRIKAREIGLLFWEKAAIYGQTRFFEI 138 (154)
Q Consensus 95 ~P~l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 138 (154)
+-++.+|+..||+.|+...+.+.+....-...-+..|++.+.+.
T Consensus 6 k~~~~~~~dk~~~~iDKA~d~vd~kTGgKy~dqId~~~d~a~~~ 49 (51)
T PF14013_consen 6 KDLASKNPDKIDQGIDKAGDFVDEKTGGKYSDQIDKAQDKAKDA 49 (51)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhh
Confidence 45678899999999987766666544222223345566655544
No 7
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=59.09 E-value=8.4 Score=22.47 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred CchhhhHHHHHHHHHhHhhHHH
Q 035692 1 MMGSFLSRPILMVFGYAYPAYE 22 (154)
Q Consensus 1 M~~~~l~~~l~~~ig~~yPay~ 22 (154)
|..+++..++.-++|.+.||..
T Consensus 1 m~as~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 1 MTASNLPSILVPLVGLVFPAIA 22 (36)
T ss_pred CccccCchhHHhHHHHHHHHHH
Confidence 6778889999999999999975
No 8
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=58.64 E-value=27 Score=19.89 Aligned_cols=29 Identities=14% Similarity=-0.063 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035692 103 KEIDLNLLKLRIKAREIGLLFWEKAAIYG 131 (154)
Q Consensus 103 ~~ID~~l~~~~~~~~~~~~~~~~~~~~~g 131 (154)
+.+|..|+++.+-..+.+..+++..+.+|
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV~~fVQKG 31 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFVRGFVQKG 31 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 35677777776655555555555444443
No 9
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=47.97 E-value=6 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=0.0
Q ss_pred hhhhchhHHHHHHHHHHHhHH
Q 035692 97 YIAKHEKEIDLNLLKLRIKAR 117 (154)
Q Consensus 97 ~l~~~e~~ID~~l~~~~~~~~ 117 (154)
.+++|+++||+.++.++++.+
T Consensus 148 ly~~~~~~Id~~~~~~~~~~~ 168 (169)
T PF02453_consen 148 LYEKYQEEIDQYVAKVKEKVK 168 (169)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456799999999998776654
No 10
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.96 E-value=81 Score=23.19 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhccCCcchhHHHHhhhhhhhhhchh
Q 035692 44 WVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWYPKTKGTTYVYNVLLRPYIAKHEK 103 (154)
Q Consensus 44 Wiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~l~~~e~ 103 (154)
|++.|+.++.--+++.++..+|-=.++=+.+.++.=....=-+=.+.++...|+++++++
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg~~v~~~~e 65 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFGPYVRDWRE 65 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhhHHHHHHHH
Confidence 678888888888888888888765555444444332211111223334566666666554
No 11
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=36.19 E-value=1.6e+02 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCcchhHHHHhhhhhhhhhchh-HHHHHHHHHHHhHHHHHHH
Q 035692 82 KTKGTTYVYNVLLRPYIAKHEK-EIDLNLLKLRIKAREIGLL 122 (154)
Q Consensus 82 ~~~GA~~iY~~~i~P~l~~~e~-~ID~~l~~~~~~~~~~~~~ 122 (154)
...+....|++.-+|++.+..+ .|.+.|+++|+-.-+....
T Consensus 23 ~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~ 64 (250)
T KOG4304|consen 23 ERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKK 64 (250)
T ss_pred CcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999987554 7999999998876665543
No 12
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=35.96 E-value=22 Score=24.82 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=12.1
Q ss_pred HHHHhhhhhhhhhchh
Q 035692 88 YVYNVLLRPYIAKHEK 103 (154)
Q Consensus 88 ~iY~~~i~P~l~~~e~ 103 (154)
+||++||+|++-+.-+
T Consensus 13 wIykkFlqP~i~~~~s 28 (88)
T PF14975_consen 13 WIYKKFLQPYIYPFWS 28 (88)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5789999998866443
No 13
>COG2822 Predicted periplasmic lipoprotein involved in iron transport [Inorganic ion transport and metabolism]
Probab=33.36 E-value=2.9e+02 Score=23.88 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHH-HHhccchhHHHHHHHHHHHHhccCCcchhHHHHhhhhhhhhhchhHHHHHHHHHHHhHHHHHHHH
Q 035692 45 VLVAVFTVGERVGD-TFISWLPMYSEAKLAFFIYLWYPKTKGTTYVYNVLLRPYIAKHEKEIDLNLLKLRIKAREIGLLF 123 (154)
Q Consensus 45 iv~~~~~~~e~~~~-~~l~~iPfY~~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~~ 123 (154)
+|-|..-++|.+.. -+.+-=--|+..- +|=+.-...||+.||+. ++|.+.+-.+.+-+.++.-..++.+.+..|
T Consensus 261 vv~GA~eLi~Eva~SKItGEEerYShtD----L~Df~ANVeGsqki~dl-~rp~Lek~dk~L~~kid~nF~kv~~~LakY 335 (376)
T COG2822 261 VVGGAAELIEEVATSKISGEEDRYSHTD----LWDFQANVEGSQKIVDL-FRPALEKKDKDLLDKIDANFKKVNTILAKY 335 (376)
T ss_pred hhhhHHHHHHHHHhccCCcchhhccccc----HHHHhccchhHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666665542 2222222333322 34455667999999987 589888766655555555555666655544
No 14
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=30.66 E-value=1.6e+02 Score=21.51 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=22.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035692 106 DLNLLKLRIKAREIGLLFWEKAAIYGQT 133 (154)
Q Consensus 106 D~~l~~~~~~~~~~~~~~~~~~~~~g~~ 133 (154)
-+.++..|.|..|......+++++.||+
T Consensus 90 ~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 90 PDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4456888888888888888888988875
No 15
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=30.12 E-value=2.3e+02 Score=25.36 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHHHhccCCcchhHH
Q 035692 12 MVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPM--YSEAKLAFFIYLWYPKTKGTTYV 89 (154)
Q Consensus 12 ~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPf--Y~~~Kl~fl~wL~~P~~~GA~~i 89 (154)
.++.++-|...+.-=.... -++|+..|++.+.... +.+.|+|- |...++++++-. .=.+++|...
T Consensus 69 llia~LapiLG~iaD~~g~------Rk~~~~~f~~i~i~~~------~~L~~i~~~s~~~~~l~~~il~-~i~~~~s~Vf 135 (438)
T COG2270 69 LLIALLAPILGTIADYPGP------RKKFFGFFTAIGIIST------FLLWFIPPGSYLLLLLLFLILA-SIGFEFSNVF 135 (438)
T ss_pred HHHHHHHHHhhhhhccCCC------cchHHHHHHHHHHHHH------HHHHHhCCCchHHHHHHHHHHH-HHhcchhhee
Confidence 3445555555444332222 2567777776665544 45667776 777777766533 3347999999
Q ss_pred HHhhhhhhhhh
Q 035692 90 YNVLLRPYIAK 100 (154)
Q Consensus 90 Y~~~i~P~l~~ 100 (154)
|+.++.-+..+
T Consensus 136 yds~L~~~~~k 146 (438)
T COG2270 136 YDSMLPRLTTK 146 (438)
T ss_pred hhhHhhhhcCc
Confidence 99988766655
No 16
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=30.10 E-value=4.9e+02 Score=24.74 Aligned_cols=84 Identities=8% Similarity=-0.067 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCCcchhHHHHhhhhhh-hhh-chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 035692 69 EAKLAFFIYLWYPKTKGTTYVYNVLLRPY-IAK-HEKEIDLNLLKLRIKAREIGLLFWEKAAIYGQTRFFEILQYFSSHS 146 (154)
Q Consensus 69 ~~Kl~fl~wL~~P~~~GA~~iY~~~i~P~-l~~-~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 146 (154)
..+....+|++.-..-.+..+.+.++-|- ..+ ....+|+.+.+..+...+-....-.+..+.|+...-+.+. +++-.
T Consensus 152 ~~R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 230 (683)
T PRK11427 152 VVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNV-FCLAD 230 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHH-HHhhc
Confidence 45555566666655556677777777776 332 5556777777665554443344444555566666655555 55555
Q ss_pred CCCCCCC
Q 035692 147 ASLPHSD 153 (154)
Q Consensus 147 ~~~~~~~ 153 (154)
+.++|-|
T Consensus 231 ~~~~~~~ 237 (683)
T PRK11427 231 DANWRTQ 237 (683)
T ss_pred cCCcHhh
Confidence 5555544
No 17
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=28.31 E-value=1.2e+02 Score=22.38 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=11.8
Q ss_pred hhhhhhhhchhHHHHHHHHHHH
Q 035692 93 LLRPYIAKHEKEIDLNLLKLRI 114 (154)
Q Consensus 93 ~i~P~l~~~e~~ID~~l~~~~~ 114 (154)
+|.-++.-.|...|..++.+.+
T Consensus 20 ~VDsYI~GqeAL~~~yV~~V~~ 41 (123)
T PF05396_consen 20 FVDSYIQGQEALAEQYVNSVKG 41 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555655555544
No 18
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=26.89 E-value=2.3e+02 Score=19.99 Aligned_cols=64 Identities=14% Similarity=0.326 Sum_probs=38.2
Q ss_pred HHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 035692 12 MVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFI 76 (154)
Q Consensus 12 ~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~ 76 (154)
.+++++. .+-.++.+++++-+.++.--|+.-|++..++.++-..++.+-.++=..+-.-++|++
T Consensus 9 i~~~v~~-~~~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~ 72 (115)
T PF10066_consen 9 IIIAVLF-LLFIIRLVRKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYL 72 (115)
T ss_pred HHHHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHH
Confidence 3333333 445666677765555666778888888877777776666655555444444444333
No 19
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=26.78 E-value=2.1e+02 Score=19.42 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=18.0
Q ss_pred HHhccCCcchhHHHHhhhhhhhhhchhHHHHHHHH
Q 035692 77 YLWYPKTKGTTYVYNVLLRPYIAKHEKEIDLNLLK 111 (154)
Q Consensus 77 wL~~P~~~GA~~iY~~~i~P~l~~~e~~ID~~l~~ 111 (154)
||..|.. -|.|+|+.+ .+..+..-++|.+
T Consensus 11 wlviPda-iA~YiYEav-----NkvsPr~~qfL~d 39 (82)
T PF05418_consen 11 WLVIPDA-IAAYIYEAV-----NKVSPRVGQFLLD 39 (82)
T ss_pred eeeccHH-HHHHHHHHH-----HccChhHHHHHHH
Confidence 7788875 588888863 3444444455543
No 20
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=26.31 E-value=79 Score=23.21 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=39.3
Q ss_pred CchhhhHHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Q 035692 1 MMGSFLSRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQYWVLVAVFTVGERVGDTFISWLPMYSEAKLAFFIYLWY 80 (154)
Q Consensus 1 M~~~~l~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~~iPfY~~~Kl~fl~wL~~ 80 (154)
|++..+...+..++|++.|. -.+.....+.+........| .-|++.+..+.+
T Consensus 22 m~~Al~~PvlILi~GillPl----G~~~~~a~sy~~i~~f~~~~------------------------~g~l~ll~~i~l 73 (118)
T PF02313_consen 22 MWSALFGPVLILILGILLPL----GILPPEALSYERILAFAQSW------------------------IGKLFLLGVIAL 73 (118)
T ss_dssp HHHHHTHHHHHHHHHTTCCC----T-SSTTTTSHHHHHHHHTSH------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc----cCCCcccCCHHHHHHHHhch------------------------HHHHHHHHHHHH
Confidence 55667778888888888883 11222222233333222222 245677777778
Q ss_pred cCCcchhHHHHhh
Q 035692 81 PKTKGTTYVYNVL 93 (154)
Q Consensus 81 P~~~GA~~iY~~~ 93 (154)
|...|+..+|+..
T Consensus 74 plwha~HRi~h~l 86 (118)
T PF02313_consen 74 PLWHAAHRIHHGL 86 (118)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888999988764
No 21
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=25.71 E-value=67 Score=21.57 Aligned_cols=26 Identities=15% Similarity=0.525 Sum_probs=16.3
Q ss_pred HHHhhcCC--ccHHHHHHHHHHHHHHHH
Q 035692 24 FKAVEKNK--PEIEQLLFWCQYWVLVAV 49 (154)
Q Consensus 24 ~kal~~~~--~~~~~~~~WL~YWiv~~~ 49 (154)
.+.|++.= .|=.....|+.+|.+|-+
T Consensus 31 L~~LK~~M~~~~Wk~FEsWM~~WLlFqM 58 (72)
T PF08831_consen 31 LKHLKNQMNESDWKSFESWMHQWLLFQM 58 (72)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 45555531 123456899999998744
No 22
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.49 E-value=2.9e+02 Score=20.14 Aligned_cols=21 Identities=10% Similarity=-0.073 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 035692 104 EIDLNLLKLRIKAREIGLLFW 124 (154)
Q Consensus 104 ~ID~~l~~~~~~~~~~~~~~~ 124 (154)
.||+.|++..+-++..+.-++
T Consensus 45 aIDNKIeQAMDLVKtHLmfAV 65 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAV 65 (123)
T ss_pred eechHHHHHHHHHHHHHHHHH
Confidence 477777776666665544333
No 23
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=1.3e+02 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=24.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035692 109 LLKLRIKAREIGLLFWEKAAIYGQTRFFEILQY 141 (154)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 141 (154)
+..+.++-......+.++++.+|.+++|++|+.
T Consensus 118 l~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~ 150 (217)
T KOG0868|consen 118 LKMLNEKEPGYGDQWAQHFITKGFTALEKLLKS 150 (217)
T ss_pred HHHhcccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 334444444445777899999999999999983
No 24
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.19 E-value=3.8e+02 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCC
Q 035692 124 WEKAAIYGQTRFFEILQYFSSHSASLPHS 152 (154)
Q Consensus 124 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 152 (154)
+++..+-|.+++.+..+.+....++-.|+
T Consensus 101 ~~~Ll~~~~dr~~~~v~r~~p~~D~v~r~ 129 (368)
T COG4046 101 LRHLLEMGEDRFRKLVRRLVPAADGVRRS 129 (368)
T ss_pred HHHHHHhhhHHHHHHHHHcCCcccceehh
Confidence 35667777777877777777666655543
No 25
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=22.46 E-value=71 Score=19.20 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhc-cCCcchhHHHH
Q 035692 66 MYSEAKLAFFIYLWY-PKTKGTTYVYN 91 (154)
Q Consensus 66 fY~~~Kl~fl~wL~~-P~~~GA~~iY~ 91 (154)
.+|.+=++.++||.. ...+++.+||+
T Consensus 15 ~fYf~Ill~L~ylYgy~g~~~~~FIYN 41 (42)
T PF12459_consen 15 LFYFAILLALIYLYGYSGIGQGPFIYN 41 (42)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeecC
Confidence 345566677888877 44567788875
No 26
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.82 E-value=1.6e+02 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=20.4
Q ss_pred hhhhhhhchhHHHHHHHHHHHhHHHH
Q 035692 94 LRPYIAKHEKEIDLNLLKLRIKAREI 119 (154)
Q Consensus 94 i~P~l~~~e~~ID~~l~~~~~~~~~~ 119 (154)
|+-++.++++.+|+-|..++....+.
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~ 48 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQI 48 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHH
Confidence 56678899999999888887766654
No 27
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=21.47 E-value=3.3e+02 Score=24.55 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=36.7
Q ss_pred CcchhHHHHhhhhhhhhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035692 83 TKGTTYVYNVLLRPYIAKHEKEIDLNLLKLRIKAREIGLLFWEKAAIYGQTRFFEILQ 140 (154)
Q Consensus 83 ~~GA~~iY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 140 (154)
++|+.-|+.-.|.--=.+.+++|++.+. ++.-.++..+..++.+...++.+.++++
T Consensus 390 ~~g~~~i~~G~i~~ekA~LQK~Ie~LIl--~q~f~qF~~e~~ek~Kk~q~k~l~~l~~ 445 (473)
T PRK15362 390 TEGANQINTGMINTEKAKLQKKIEQLIL--QQRFLDFIMEQYEKQKKIEQKRLEELYK 445 (473)
T ss_pred HHHHHHhhhchhhHHHhhHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999988777788888888775 3344455555544444444444444443
No 28
>PF01639 v110: Viral family 110; InterPro: IPR004848 This entry represents a family of viral proteins of unknown function known as the 110 family []. They contain a central cysteine rich region with eight conserved cysteines. Some proteins in this entry contain two copies of the cysteine rich region eg P18560 from SWISSPROT.
Probab=20.87 E-value=14 Score=26.74 Aligned_cols=30 Identities=33% Similarity=0.705 Sum_probs=18.0
Q ss_pred HHhHhhHHHHHHHhhcCCccHHHHHHHHHH
Q 035692 14 FGYAYPAYECFKAVEKNKPEIEQLLFWCQY 43 (154)
Q Consensus 14 ig~~yPay~S~kal~~~~~~~~~~~~WL~Y 43 (154)
+..++|.++.-..-.+..|..+++.-|.+|
T Consensus 9 ~~~l~~~~~~~~L~~T~~PP~~EL~YWCTY 38 (110)
T PF01639_consen 9 NSVLYPFYETGQLPRTRNPPEEELEYWCTY 38 (110)
T ss_pred hhhhhhhhhcccCcccCCCChHHhceeccc
Confidence 455666666666666666666665555544
No 29
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=51 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 035692 38 LFWCQYWVLVAVFTV 52 (154)
Q Consensus 38 ~~WL~YWiv~~~~~~ 52 (154)
+.|+.||++-++=.+
T Consensus 99 R~Wm~YWil~sl~lL 113 (423)
T KOG0365|consen 99 RPWMCYWILNSLALL 113 (423)
T ss_pred cchhHHHHHHHHHHh
Confidence 689999999876543
No 30
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.45 E-value=1.8e+02 Score=22.35 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhHhhHHHHHHHhhcCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035692 6 LSRPILMVFGYAYPAYECFKAVEKNK---PEIEQLLFWCQYWVLVAVFTVGERVGDTFIS 62 (154)
Q Consensus 6 l~~~l~~~ig~~yPay~S~kal~~~~---~~~~~~~~WL~YWiv~~~~~~~e~~~~~~l~ 62 (154)
++-.+...+|.+||+.-|.-.+--.- .+.-+.-.=..+|++.++++++--..|.+-+
T Consensus 10 ~al~lvg~vGlv~PaiPs~lli~~G~l~y~~gf~~~~s~~f~~v~~lvtlli~~aD~vA~ 69 (160)
T COG2839 10 LALFLVGFVGLVYPAIPSTLLIFAGFLAYGFGFQIYLSGVFWLVMALVTLLIIAADYVAN 69 (160)
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999987766543210 0000011235899999999998888886543
Done!