Query 035692
Match_columns 154
No_of_seqs 135 out of 686
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 38.8 62 0.0021 25.0 5.5 46 86-132 165-210 (214)
2 3m91_B Prokaryotic ubiquitin-l 38.6 20 0.0007 20.9 2.1 34 98-131 9-42 (44)
3 1wgn_A UBAP1, ubiquitin associ 33.0 71 0.0024 20.0 4.2 34 8-41 21-54 (63)
4 1iie_A Protein (HLA-DR antigen 26.8 39 0.0013 21.9 2.2 27 23-49 32-60 (75)
5 3ghg_C Fibrinogen gamma chain; 26.8 2E+02 0.0069 24.2 7.3 27 94-120 25-51 (411)
6 1jb0_I Photosystem 1 reaction 22.7 65 0.0022 18.1 2.4 18 5-22 9-26 (38)
7 2dlr_A RGS10, regulator of G-p 21.5 1E+02 0.0034 21.4 3.9 13 84-96 65-77 (149)
8 1jy2_P Fibrinogen gamma-B chai 21.5 73 0.0025 18.8 2.5 21 94-114 25-45 (48)
9 4ae4_A Ubiquitin-associated pr 20.0 1E+02 0.0034 21.3 3.5 36 7-42 9-44 (118)
10 1vpu_A VPU protein, VPU(39-81) 18.1 38 0.0013 19.8 0.7 18 104-121 2-19 (45)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=38.83 E-value=62 Score=24.98 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=22.7
Q ss_pred hhHHHHhhhhhhhhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035692 86 TTYVYNVLLRPYIAKHEKEIDLNLLKLRIKAREIGLLFWEKAAIYGQ 132 (154)
Q Consensus 86 A~~iY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g~ 132 (154)
|-..|++.+.--...+.+.|++. ++++++.++-..+-.++...+|.
T Consensus 165 a~hFYrsL~~hk~e~~~~~i~el-~~~~~~l~~~~~~~~~~~~~~~~ 210 (214)
T 4hkr_A 165 AIHFYRSLVSHKYEVTVSGIREL-EMLKEQMEQDHLEHHNNIRNNGE 210 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH-HHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccccccCCC
Confidence 66778888887777777776654 44444443333222333444443
No 2
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=38.55 E-value=20 Score=20.86 Aligned_cols=34 Identities=21% Similarity=-0.022 Sum_probs=15.3
Q ss_pred hhhchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035692 98 IAKHEKEIDLNLLKLRIKAREIGLLFWEKAAIYG 131 (154)
Q Consensus 98 l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~g 131 (154)
-.+....+|..|+++.+-..+.+..+++..+.+|
T Consensus 9 ~~~~~~~~D~lLDeId~vLE~NAeeFV~~fVQKG 42 (44)
T 3m91_B 9 REKLTEETDDLLDEIDDVLEENAEDFVRAYVQKG 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 3455667888888877655555555544444333
No 3
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.01 E-value=71 Score=19.96 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHH
Q 035692 8 RPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWC 41 (154)
Q Consensus 8 ~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL 41 (154)
..+-++++..|.--...|||+....|.++...||
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577888999999999999999877777767775
No 4
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=26.85 E-value=39 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.413 Sum_probs=16.5
Q ss_pred HHHHhhcCC--ccHHHHHHHHHHHHHHHH
Q 035692 23 CFKAVEKNK--PEIEQLLFWCQYWVLVAV 49 (154)
Q Consensus 23 S~kal~~~~--~~~~~~~~WL~YWiv~~~ 49 (154)
-.|.|++.= .|=.....|+.||.+|-+
T Consensus 32 NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 345555541 122356799999998743
No 5
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.84 E-value=2e+02 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=22.7
Q ss_pred hhhhhhhchhHHHHHHHHHHHhHHHHH
Q 035692 94 LRPYIAKHEKEIDLNLLKLRIKAREIG 120 (154)
Q Consensus 94 i~P~l~~~e~~ID~~l~~~~~~~~~~~ 120 (154)
|+-+|.+||+.||+-|.+++..+.++.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~is 51 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVE 51 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 567889999999999999988777654
No 6
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=22.75 E-value=65 Score=18.13 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhHhhHHH
Q 035692 5 FLSRPILMVFGYAYPAYE 22 (154)
Q Consensus 5 ~l~~~l~~~ig~~yPay~ 22 (154)
++-.++.-++|++.||..
T Consensus 9 ~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp THHHHHHHHHHTHHHHHH
T ss_pred hCChhhHhHHHHHHHHHH
Confidence 456678889999999864
No 7
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=1e+02 Score=21.35 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.8
Q ss_pred cchhHHHHhhhhh
Q 035692 84 KGTTYVYNVLLRP 96 (154)
Q Consensus 84 ~GA~~iY~~~i~P 96 (154)
+-|..||++||.|
T Consensus 65 ~~a~~Iy~~yi~~ 77 (149)
T 2dlr_A 65 EKAKEIYMTFLSS 77 (149)
T ss_dssp HHHHHHHTTTSST
T ss_pred HHHHHHHHHHcCC
Confidence 4588899999987
No 8
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=21.53 E-value=73 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=16.5
Q ss_pred hhhhhhhchhHHHHHHHHHHH
Q 035692 94 LRPYIAKHEKEIDLNLLKLRI 114 (154)
Q Consensus 94 i~P~l~~~e~~ID~~l~~~~~ 114 (154)
|.-++++|+..+|+-|..+.+
T Consensus 25 iadfL~~Yq~~vd~dL~~lE~ 45 (48)
T 1jy2_P 25 IADFLNNYQTSVDKDLRTLEG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHH
Confidence 566888999999998876653
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=19.97 E-value=1e+02 Score=21.30 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHHH
Q 035692 7 SRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWCQ 42 (154)
Q Consensus 7 ~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL~ 42 (154)
..++..++...||--.+-|||.....+.+....||.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 357788999999999999999876557776666764
No 10
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=18.07 E-value=38 Score=19.83 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035692 104 EIDLNLLKLRIKAREIGL 121 (154)
Q Consensus 104 ~ID~~l~~~~~~~~~~~~ 121 (154)
+||+.+..+++++.+-+.
T Consensus 2 kId~li~RIreRaEDSGN 19 (45)
T 1vpu_A 2 QIDRLIDRITERAEDSGN 19 (45)
T ss_dssp CHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHhhhcCCC
Confidence 489999999999887653
Done!