Query 035692
Match_columns 154
No_of_seqs 135 out of 686
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035692.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035692hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 36.4 11 0.0008 18.1 1.9 19 7-25 4-22 (27)
2 d1iiea_ a.109.1.1 (A:) Class I 28.1 17 0.0012 22.1 2.2 27 23-49 32-60 (75)
3 d1vpua_ g.34.1.1 (A:) HIV-1 VP 27.6 8.9 0.00064 21.1 0.7 18 104-121 2-19 (45)
4 d1r5sa_ f.50.1.1 (A:) Gap junc 17.9 21 0.0015 23.3 1.1 13 142-154 117-129 (132)
5 d1wjia_ a.5.2.1 (A:) Tudor dom 16.1 87 0.0063 17.5 3.7 35 7-41 10-44 (63)
6 d1wiva_ a.5.2.1 (A:) Ubiquitin 15.5 99 0.0072 17.9 4.0 34 8-41 31-64 (73)
7 d1z8ua1 a.7.11.1 (A:2-91) Alph 14.9 1.3E+02 0.0092 18.3 4.4 35 90-124 47-81 (90)
8 d1wgna_ a.5.2.1 (A:) Ubiquitin 13.3 1.1E+02 0.0083 17.1 3.7 34 8-41 21-54 (63)
9 d2oi8a1 a.4.1.9 (A:8-86) Putat 12.2 1.2E+02 0.0087 16.9 3.7 32 97-128 45-76 (79)
10 d1cy5a_ a.77.1.3 (A:) Apoptoti 12.2 1.1E+02 0.0079 17.8 3.5 36 105-140 53-88 (93)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=36.45 E-value=11 Score=18.15 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHhhHHHHHH
Q 035692 7 SRPILMVFGYAYPAYECFK 25 (154)
Q Consensus 7 ~~~l~~~ig~~yPay~S~k 25 (154)
.-++..+.|..|-||+-||
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 3456678899999988765
No 2
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.12 E-value=17 Score=22.09 Aligned_cols=27 Identities=11% Similarity=0.413 Sum_probs=16.6
Q ss_pred HHHHhhcCC--ccHHHHHHHHHHHHHHHH
Q 035692 23 CFKAVEKNK--PEIEQLLFWCQYWVLVAV 49 (154)
Q Consensus 23 S~kal~~~~--~~~~~~~~WL~YWiv~~~ 49 (154)
-.+.|++.= .|=.....|+.+|.+|-+
T Consensus 32 NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 345555541 122356899999998743
No 3
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=27.56 E-value=8.9 Score=21.11 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035692 104 EIDLNLLKLRIKAREIGL 121 (154)
Q Consensus 104 ~ID~~l~~~~~~~~~~~~ 121 (154)
+||+.++.+++|+.+-+.
T Consensus 2 kIdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSGN 19 (45)
T ss_dssp CHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHcccCCC
Confidence 489999999999887653
No 4
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.89 E-value=21 Score=23.28 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=9.9
Q ss_pred hhcCCCCCCCCCC
Q 035692 142 FSSHSASLPHSDQ 154 (154)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (154)
+++..+++||||.
T Consensus 117 Assrassr~rpdd 129 (132)
T d1r5sa_ 117 ASSRASSRPRPDD 129 (132)
T ss_dssp TTTTSSCCCSSSS
T ss_pred hhhhcccCCCCcc
Confidence 5667788899983
No 5
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.13 E-value=87 Score=17.53 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHH
Q 035692 7 SRPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWC 41 (154)
Q Consensus 7 ~~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL 41 (154)
...+..++...++--.+-+||.....+.+....||
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL 44 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVL 44 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 34677788888999999999988766777666676
No 6
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.48 E-value=99 Score=17.89 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHH
Q 035692 8 RPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWC 41 (154)
Q Consensus 8 ~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL 41 (154)
..+..++...++--.+.+||+..+.+.+.-..||
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~L 64 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKASGGDIEKATDWV 64 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4566788888999999999998876766666665
No 7
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.92 E-value=1.3e+02 Score=18.29 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=27.0
Q ss_pred HHhhhhhhhhhchhHHHHHHHHHHHhHHHHHHHHH
Q 035692 90 YNVLLRPYIAKHEKEIDLNLLKLRIKAREIGLLFW 124 (154)
Q Consensus 90 Y~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~~~ 124 (154)
|-++.+|.+..-+++-|+.+.++++.....+..++
T Consensus 47 Yinyy~~~~~GeqqEqdrA~~el~qeL~tla~~FL 81 (90)
T d1z8ua1 47 YINYYRQQVTGEPQERDKALQELRQELNTLANPFL 81 (90)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888889999988887776666654
No 8
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.32 E-value=1.1e+02 Score=17.11 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhhHHHHHHHhhcCCccHHHHHHHH
Q 035692 8 RPILMVFGYAYPAYECFKAVEKNKPEIEQLLFWC 41 (154)
Q Consensus 8 ~~l~~~ig~~yPay~S~kal~~~~~~~~~~~~WL 41 (154)
..+-.++...+|--++.+||+....+.+.-..||
T Consensus 21 ~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L 54 (63)
T d1wgna_ 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4577888899999999999998766666666666
No 9
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.23 E-value=1.2e+02 Score=16.92 Aligned_cols=32 Identities=16% Similarity=-0.123 Sum_probs=14.9
Q ss_pred hhhhchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035692 97 YIAKHEKEIDLNLLKLRIKAREIGLLFWEKAA 128 (154)
Q Consensus 97 ~l~~~e~~ID~~l~~~~~~~~~~~~~~~~~~~ 128 (154)
.+-+|-+..|..+..+-.+..+......+.+.
T Consensus 45 ~~Y~~F~~k~~L~~~~~~~~~~~~~~~~~~a~ 76 (79)
T d2oi8a1 45 ALYRYFDGRDELITELIRDAYRSQADSLRAAA 76 (79)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444433333333
No 10
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.18 E-value=1.1e+02 Score=17.85 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035692 105 IDLNLLKLRIKAREIGLLFWEKAAIYGQTRFFEILQ 140 (154)
Q Consensus 105 ID~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 140 (154)
..+.++.+..+..++...+.+...+.|+..+.++|+
T Consensus 53 ~~~LL~~L~~kg~~af~~F~~aL~~~~~~~La~lLe 88 (93)
T d1cy5a_ 53 AAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLH 88 (93)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHTTCHHHHHHHG
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHhcChHHHHHHhc
Confidence 445555555555555555555555666666666554
Done!