BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035693
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 72 LFSLQYLQSLNLGFTLFYGFPMPSSL----PRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
L ++ L+ L+L F F G +P SL L+TLDLSS FS + +PN Q
Sbjct: 339 LLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQ 390
Query: 128 N-LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
N L+ELYL N +G+ LSNC S+ ++ HL+
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPP--------------TLSNC--SELVSLHLSF------- 427
Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
+ +S +P + +L L L L L G+ P++++ V TLETL L +N L G
Sbjct: 428 -----NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGE 481
Query: 247 LPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
+P +G++P IG LENLA + +S+ +F+ IP + + L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 306 HLDFSSNHFSDPIPT 320
LD ++N F+ IP
Sbjct: 542 WLDLNTNLFNGTIPA 556
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 37/158 (23%)
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-------------NLTTLDLSQCDLHGK 221
H NLL IR + +S + P + + + ++ LD+S L G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 222 FPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLA 281
P+++ +P L L+L +N + SG +PD +G+L L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDI------------------------SGSIPDEVGDLRGLN 683
Query: 282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319
+D+SS IP +M+ LT L +D S+N+ S PIP
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 82/239 (34%)
Query: 137 LDNVDLSGRR--TEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV 194
L ++D+SG + ++ +A+S L++LN+S+ PI L SL + L +N
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK-F 281
Query: 195 SCQVPEFVANLLN-LTTLDLSQCDLHGKFP-------------------------EKVLQ 228
+ ++P+F++ + LT LDLS +G P + +L+
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 229 VPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLE-NLASVDVSS 287
+ L+ LDLS+N FSG+LP+S+ NL +L ++D+SS
Sbjct: 342 MRGLKVLDLSFNE------------------------FSGELPESLTNLSASLLTLDLSS 377
Query: 288 CNFTRPI--------------------------PTSMANLTQLFHLDFSSNHFSDPIPT 320
NF+ PI P +++N ++L L S N+ S IP+
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 151 KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210
K + +P L +LNL + +S I + +L L+++ L N + ++P+ ++ L LT
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTE 708
Query: 211 LDLSQCDLHGKFPE 224
+DLS +L G PE
Sbjct: 709 IDLSNNNLSGPIPE 722
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 50/321 (15%)
Query: 31 WSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIG-----SLENASGLFSLQYLQSLNLGF 85
WS + + C ++GV C + V +DLS++P+ +G S + +L + ++
Sbjct: 33 WSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91
Query: 86 TLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYL--DNVDLS 143
++ GF +SL +LDLS R +SG + + + L+ L + + +D
Sbjct: 92 SV-SGFKCSASL---TSLDLS-RNSLSG-----PVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 144 GRRTEWCKAMSFLPNLQVLNLS----------NCLLSDPINH--HLA---NLLSLSVIRL 188
G+ + K L +L+VL+LS +LSD HLA N +S V
Sbjct: 142 GKVSGGLK----LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 189 R---------DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSY 239
R ++ S +P F+ + L LD+S L G F + L+ L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 240 NSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSI-GNLENLASVDVSSCNFTRPIPTSM 298
N + G +P P F+G++PD + G + L +D+S +F +P
Sbjct: 257 NQFV-GPIPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 299 ANLTQLFHLDFSSNHFSDPIP 319
+ + L L SSN+FS +P
Sbjct: 315 GSCSLLESLALSSNNFSGELP 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 43/255 (16%)
Query: 72 LFSLQYLQSLNLGFTLFYGFPMPSSL----PRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127
L ++ L+ L+L F F G +P SL L+TLDLSS FS + +PN Q
Sbjct: 336 LLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNN----FSGPI-LPNL--CQ 387
Query: 128 N-LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVI 186
N L+ELYL N +G+ +P LSNC S+ ++ HL+
Sbjct: 388 NPKNTLQELYLQNNGFTGK----------IPP----TLSNC--SELVSLHLSF------- 424
Query: 187 RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS 246
+ +S +P + +L L L L L G+ P++++ V TLETL L +N L G
Sbjct: 425 -----NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGE 478
Query: 247 LPH-FPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305
+P +G++P IG LENLA + +S+ +F+ IP + + L
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 306 HLDFSSNHFSDPIPT 320
LD ++N F+ IP
Sbjct: 539 WLDLNTNLFNGTIPA 553
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 37/158 (23%)
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-------------NLTTLDLSQCDLHGK 221
H NLL IR + +S + P + + + ++ LD+S L G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 222 FPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLA 281
P+++ +P L L+L +N + SG +PD +G+L L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDI------------------------SGSIPDEVGDLRGLN 680
Query: 282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319
+D+SS IP +M+ LT L +D S+N+ S PIP
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 82/239 (34%)
Query: 137 LDNVDLSGRR--TEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV 194
L ++D+SG + ++ +A+S L++LN+S+ PI L SL + L +N
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK-F 278
Query: 195 SCQVPEFVANLLN-LTTLDLSQCDLHGKFP-------------------------EKVLQ 228
+ ++P+F++ + LT LDLS +G P + +L+
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 229 VPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLE-NLASVDVSS 287
+ L+ LDLS+N FSG+LP+S+ NL +L ++D+SS
Sbjct: 339 MRGLKVLDLSFNE------------------------FSGELPESLTNLSASLLTLDLSS 374
Query: 288 CNFTRPI--------------------------PTSMANLTQLFHLDFSSNHFSDPIPT 320
NF+ PI P +++N ++L L S N+ S IP+
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 50/321 (15%)
Query: 31 WSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIG-----SLENASGLFSLQYLQSLNLGF 85
WS + + C ++GV C + V +DLS++P+ +G S + +L + ++
Sbjct: 30 WSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 88
Query: 86 TLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYL--DNVDLS 143
++ GF +SL +LDLS R +SG + + + L+ L + + +D
Sbjct: 89 SV-SGFKCSASL---TSLDLS-RNSLSG-----PVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 144 GRRTEWCKAMSFLPNLQVLNLS----------NCLLSDPINH--HLA---NLLSLSVIRL 188
G+ + K L +L+VL+LS +LSD HLA N +S V
Sbjct: 139 GKVSGGLK----LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 189 R---------DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSY 239
R ++ S +P F+ + L LD+S L G F + L+ L++S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 240 NSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSI-GNLENLASVDVSSCNFTRPIPTSM 298
N + G +P P F+G++PD + G + L +D+S +F +P
Sbjct: 254 NQFV-GPIPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 299 ANLTQLFHLDFSSNHFSDPIP 319
+ + L L SSN+FS +P
Sbjct: 312 GSCSLLESLALSSNNFSGELP 332
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 151 KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210
K + +P L +LNL + +S I + +L L+++ L N + ++P+ ++ L LT
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTE 705
Query: 211 LDLSQCDLHGKFPE 224
+DLS +L G PE
Sbjct: 706 IDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 172 PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPT 231
PI LANL L+ + + + + +P +A L L L ++ ++ G P+ + Q+ T
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 232 LETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENL-ASVDVSSCNF 290
L TLD SYN+L P SG +PDS G+ L S+ +S
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 291 TRPIPTSMANLTQLFHLDFSSN 312
T IP + ANL F +D S N
Sbjct: 187 TGKIPPTFANLNLAF-VDLSRN 207
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 130/325 (40%), Gaps = 48/325 (14%)
Query: 1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCD---EAGHVIGLD 55
C K L+Q+K D P +S W +TDCC+ W GV CD + V LD
Sbjct: 3 CNPQDKQALLQIKK------DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56
Query: 56 LSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFS 115
LS G L +P+PSSL L L+ I G +
Sbjct: 57 LS--------------------------GLNLPKPYPIPSSLANLPYLNFLY---IGGIN 87
Query: 116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175
L P LT+L LY+ + ++SG ++ +S + L L+ S LS +
Sbjct: 88 -NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLPP 143
Query: 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL-TTLDLSQCDLHGKFPEKVLQVPTLET 234
+++L +L I D + +S +P+ + L T++ +S+ L GK P + L
Sbjct: 144 SISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
+DLS N L + F S + L +G +NL +D+ + +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 295 PTSMANLTQLFHLDFSSNHFSDPIP 319
P + L L L+ S N+ IP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
L NL L++S+ N L SL V+++ N +P+ L NLT LDLSQ
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
C L P + +L+ L++S+N+ SL FP
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 537
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 138 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 178 ANLLSLSVIRLRD-NHAVSCQVPEFVA--NLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234
+N L L + D H+ Q+ EF +L NL LD+S F + +LE
Sbjct: 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
L ++ NS + LP D L NL +D+S C +
Sbjct: 474 LKMAGNSFQENFLP-----------------------DIFTELRNLTFLDLSQCQLEQLS 510
Query: 295 PTSMANLTQLFHLDFSSNHF 314
PT+ +L+ L L+ S N+F
Sbjct: 511 PTAFNSLSSLQVLNMSHNNF 530
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 139 NVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC 196
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115
Query: 197 QVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXX 254
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ---------- 161
Query: 255 XXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 162 ------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 74 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 120
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180
Query: 214 S 214
S
Sbjct: 181 S 181
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
L NL L++S+ N L SL V+++ N +P+ L NLT LDLSQ
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
C L P + +L+ L++S+N+ SL FP
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 218
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSF-LPNLQVLNLSNCLLSDPINHHLANLLSLS 184
F LT+L +L L + LS + C F +L+ L+LS + + +N L L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLS----FNGVITMSSNFLGLE 101
Query: 185 VIRLRD-NHAVSCQVPEFVA--NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241
+ D H+ Q+ EF +L NL LD+S F + +LE L ++ NS
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 242 LLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301
+ LP D L NL +D+S C + PT+ +L
Sbjct: 162 FQENFLP-----------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 302 TQLFHLDFSSNHF 314
+ L L+ S N+F
Sbjct: 199 SSLQVLNMSHNNF 211
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
L NL L++S+ N L SL V+++ N +P+ L NLT LDLSQ
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251
C L P + +L+ L++S+N+ SL FP
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFP 513
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 114 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 178 ANLLSLSVIRLRD-NHAVSCQVPEFVA--NLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234
+N L L + D H+ Q+ EF +L NL LD+S F + +LE
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
L ++ NS + LP D L NL +D+S C +
Sbjct: 450 LKMAGNSFQENFLP-----------------------DIFTELRNLTFLDLSQCQLEQLS 486
Query: 295 PTSMANLTQLFHLDFSSNHF 314
PT+ +L+ L L+ S N+F
Sbjct: 487 PTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 139 NVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC 196
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 197 QVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXX 254
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ---------- 137
Query: 255 XXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 138 ------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 50 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 96
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 214 S 214
S
Sbjct: 157 S 157
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQ 215
L NL L++S+ N L SL V+++ N +P+ L NLT LDLSQ
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 216 CDLHGKFPEKVLQVPTLETLDLSYNSL 242
C L P + +L+ L+++ N L
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 114 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 139 NVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC 196
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 197 QVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXX 254
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ---------- 137
Query: 255 XXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 138 ------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 178 ANLLSLSVIRLRD-NHAVSCQVPEFVA--NLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234
+N L L + D H+ Q+ EF +L NL LD+S F + +LE
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294
L ++ NS + LP D L NL +D+S C +
Sbjct: 450 LKMAGNSFQENFLP-----------------------DIFTELRNLTFLDLSQCQLEQLS 486
Query: 295 PTSMANLTQLFHLDFSSNH 313
PT+ +L+ L L+ +SN
Sbjct: 487 PTAFNSLSSLQVLNMASNQ 505
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNF--NFFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 50 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 96
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 214 S 214
S
Sbjct: 157 S 157
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
F L L +L L+ +L+ TE A+S L L VL L + ++ ++ L L V
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN--SLL 243
+ + + P + L NLT+L ++ C+L V + L L+LSYN S +
Sbjct: 205 LEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263
Query: 244 QGSLPH 249
+GS+ H
Sbjct: 264 EGSMLH 269
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 95 SSLPRLVTLDLSSREPISGFSWRL-EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM 153
+L L TL+LS EP+ S E P EL +L + ++ ++ + + +
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQL-------ELLDLAFTRLHINAPQSPF-QNL 421
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL----NLT 209
FL QVLNL+ C L H LA L L + L+ NH + + NLL +L
Sbjct: 422 HFL---QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK--TNLLQTVGSLE 476
Query: 210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSL 242
L LS C L + + + +DLS+NSL
Sbjct: 477 VLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSN----CLLSDPINHHLANLL 181
FQ T+L+EL L L G + K ++ L L VL++++ C +S AN
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKL-VLSVNHFDQLCQISA------ANFP 322
Query: 182 SLSVIRLRDN----H-AVSCQVPEFVANLLNLTTLDLSQCDLHGK--FPEKVLQVPTLET 234
SL+ + +R N H V C + L NL TLDLS D+ ++ + L+T
Sbjct: 323 SLTHLYIRGNVKKLHLGVGC-----LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQT 377
Query: 235 LDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFSGKLPDS-IGNLENLASVDVSSCNFTRP 293
L+LS+N L F T P S NL L ++++ C
Sbjct: 378 LNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTS 437
Query: 294 IPTSMANLTQLFHLDFSSNHFSDPIPT 320
+A L L HL+ NHF D T
Sbjct: 438 NQHLLAGLPVLRHLNLKGNHFQDGTIT 464
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 75 LQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
L++L+ L L L + + LP L TL+L F RL F+ L++L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL--------FDNRLTTVPTQAFEYLSKL 109
Query: 133 RELYLDN-------------------VDLSG-RRTEWCKAMSF--LPNLQVLNLSNCLLS 170
REL+L N +DL +R E+ +F L NL+ LNL C L
Sbjct: 110 RELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 171 DPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP 230
D N L L+ L + L N + P L +L L L + +
Sbjct: 170 DIPN--LTALVRLEELELSGNR-LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 231 TLETLDLSYNSLLQGSLPH 249
+LE L+LS+N+L+ SLPH
Sbjct: 227 SLEELNLSHNNLM--SLPH 243
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 71 GLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT 130
GL +L+YL NLG P ++L RL L+LS RL++ FQ LT
Sbjct: 154 GLVNLRYL---NLGMCNLKDIPNLTALVRLEELELSGN--------RLDLIRPGSFQGLT 202
Query: 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDP 172
LR+L+L + ++ T A L +L+ LNLS N L+S P
Sbjct: 203 SLRKLWLMHAQVA---TIERNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 34/157 (21%)
Query: 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW----CKAMSFLPNLQVLNLSNCLLSDP 172
RL IP F F +L+ + L ++ ++ C L +L+ L+LS L+
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM--- 346
Query: 173 INHHLANLL------SLSVIRLRDNHAVSCQ-VPEFVANLLNLTTLDLSQCDLH-----G 220
+ +L N SL + L NH S Q E + L NLT+LD+S+ H
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406
Query: 221 KFPEKV---------LQV------PTLETLDLSYNSL 242
++PEK+ ++V TLE LD+S N+L
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 34/157 (21%)
Query: 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW----CKAMSFLPNLQVLNLSNCLLSDP 172
RL IP F F +L+ + L ++ ++ C L +L+ L+LS L+
Sbjct: 316 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM--- 372
Query: 173 INHHLANLL------SLSVIRLRDNHAVSCQ-VPEFVANLLNLTTLDLSQCDLH-----G 220
+ +L N SL + L NH S Q E + L NLT+LD+S+ H
Sbjct: 373 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 432
Query: 221 KFPEKV---------LQV------PTLETLDLSYNSL 242
++PEK+ ++V TLE LD+S N+L
Sbjct: 433 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 469
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 75 LQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132
L++L+ L L L + + LP L TL+L F RL F+ L++L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL--------FDNRLTTVPTQAFEYLSKL 109
Query: 133 RELYLDN-------------------VDLSG-RRTEWCKAMSF--LPNLQVLNLSNCLLS 170
REL+L N +DL +R E+ +F L NL+ LNL C L
Sbjct: 110 RELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 171 DPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP 230
D N L L+ L + L N + P L +L L L + +
Sbjct: 170 DIPN--LTALVRLEELELSGNR-LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 231 TLETLDLSYNSLLQGSLPH 249
+LE L+LS+N+L+ SLPH
Sbjct: 227 SLEELNLSHNNLM--SLPH 243
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 70 SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129
GL +L+YL NLG P ++L RL L+LS RL++ FQ L
Sbjct: 153 EGLVNLRYL---NLGMCNLKDIPNLTALVRLEELELSGN--------RLDLIRPGSFQGL 201
Query: 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS-NCLLSDP 172
T LR+L+L + ++ T A L +L+ LNLS N L+S P
Sbjct: 202 TSLRKLWLMHAQVA---TIERNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI--NHHLANLL 181
N F+ L+ L L LD T A + L NL+VL L+ C L + + L
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLET---GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
SL ++ LRDN+ Q F N+ LDL+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI--NHHLANLL 181
N F+ L+ L L LD T A + L NL+VL L+ C L + + L
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLET---GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
SL ++ LRDN+ Q F N+ LDL+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL----NLTTLDLS 214
L+VLNLS+CLL H LA L L + L+ N + + NLL +L L LS
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK--TNLLQMVGSLEILILS 483
Query: 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
C+L + + + LDLS+NSL S+
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSM 516
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSNHF 314
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 116 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 52 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 98
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 99 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 214 S 214
S
Sbjct: 159 S 159
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 138 DNVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 196 CQVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXX 253
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ--------- 139
Query: 254 XXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 140 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 115 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNF--NFFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 51 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 97
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 214 S 214
S
Sbjct: 158 S 158
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 138 DNVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 196 CQVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXX 253
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ--------- 138
Query: 254 XXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 139 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 115 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 51 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 97
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 214 S 214
S
Sbjct: 158 S 158
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 138 DNVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 196 CQVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXX 253
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ--------- 138
Query: 254 XXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 139 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 114 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 50 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 96
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 214 S 214
S
Sbjct: 157 S 157
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 138 DNVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 196 CQVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXX 253
+ F +++L L ++ + L FP + + TL+ L++++N L+Q
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ--------- 137
Query: 254 XXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 138 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXXXXXXXXXXXXTSFS 267
L LDLS+C++ + L TL L+ N + +L F T+ +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 268 GKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSN 312
IG+L+ L ++V+ N + +P +NLT L HLD SSN
Sbjct: 116 SLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 138 DNVDLSGRRTEWCKAMSFL--PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS 195
N+DLS + SF P LQVL+LS C + + +L LS + L N S
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 196 CQVPEF--VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPXX 253
+ F +++L L L+ + L FP + + TL+ L++++N L+Q
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLEN-FP--IGHLKTLKELNVAHN-LIQ--------- 139
Query: 254 XXXXXXXXXXTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304
S KLP+ NL NL +D+SS T + L Q+
Sbjct: 140 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFN--FFQNLTELRELYLDNVDLSGRRTEWCKAM 153
S P L LDLS R EI +Q+L+ L L L + ++ A
Sbjct: 52 SFPELQVLDLS----------RCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAF 98
Query: 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
S L +LQ L L+ N + +L +L + + N S ++PE+ +NL NL LDL
Sbjct: 99 SGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 214 S 214
S
Sbjct: 159 S 159
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
F L EL+ L + L R TE+ +S L L L++S + L SL+
Sbjct: 395 FMGLEELQHLDFQHSTLK-RVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
+++ N + AN NLT LDLS+C L + L+ L++S+N+LL
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 246 SLPHF 250
H+
Sbjct: 513 DSSHY 517
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
+ L++L + + N SC++P + +NL NL +DLS
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188
LT L L L + L+ +E A +PNL+ L+LS+ L ++L +L V+ L
Sbjct: 63 LTNLHSLLLSHNHLNFISSE---AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119
Query: 189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL----QVPTLETLDLSYNSL 242
+NH V F ++ L L LSQ + +FP +++ ++P L LDLS N L
Sbjct: 120 YNNHIVVVDRNAF-EDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 104 DLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLN 163
DL + E + ++ + + + N F+++ +L++LYL +S E K + LP L +L+
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169
Query: 164 LS 165
LS
Sbjct: 170 LS 171
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSV 185
F L EL+ L + L R TE+ +S L L L++S + L SL+
Sbjct: 390 FMGLEELQHLDFQHSTLK-RVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNT 447
Query: 186 IRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG 245
+++ N + AN NLT LDLS+C L + L+ L++S+N+LL
Sbjct: 448 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 507
Query: 246 SLPHF 250
H+
Sbjct: 508 DSSHY 512
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLS 214
+ L++L + + N SC++P + +NL NL +DLS
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 156
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 113 GFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP 172
GF + L N F+ L +L+ L L ++ E A L NLQVLNLS LL +
Sbjct: 276 GFVFSL---NSRVFETLKDLKVLNLAYNKINKIADE---AFYGLDNLQVLNLSYNLLGEL 329
Query: 173 INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDL 213
+ + L ++ I L+ NH Q F L L TLDL
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDL 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 26/229 (11%)
Query: 6 KLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGL---DLSAEPIL 62
KL+ I M N+ I D+ TP A ++ + T + D D ++ L +LS+ I
Sbjct: 86 KLVDILMNNNQIADI--TPLANLTNLTGLT-LFNNQITDIDPLKNLTNLNRLELSSNTI- 141
Query: 63 IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
+ S L L LQ LN G + P+ ++L L LD+SS + +S S ++ N
Sbjct: 142 ----SDISALSGLTSLQQLNFGNQVTDLKPL-ANLTTLERLDISSNK-VSDISVLAKLTN 195
Query: 123 F-------NFFQNLTELRELY-LDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
N ++T L L LD + L+G + + ++ L NL L+L+N +S+
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-- 253
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP 223
L+ L L+ ++L N +S P +A L LT L+L++ L P
Sbjct: 254 APLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 26/229 (11%)
Query: 6 KLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGL---DLSAEPIL 62
KL+ I M N+ I D+ TP A ++ + T + D D ++ L +LS+ I
Sbjct: 86 KLVDILMNNNQIADI--TPLANLTNLTGLT-LFNNQITDIDPLKNLTNLNRLELSSNTI- 141
Query: 63 IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
+ S L L LQ LN G + P+ ++L L LD+SS + +S S ++ N
Sbjct: 142 ----SDISALSGLTSLQQLNFGNQVTDLKPL-ANLTTLERLDISSNK-VSDISVLAKLTN 195
Query: 123 F-------NFFQNLTELRELY-LDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
N ++T L L LD + L+G + + ++ L NL L+L+N +S+
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-- 253
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP 223
L+ L L+ ++L N +S P +A L LT L+L++ L P
Sbjct: 254 APLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF 155
+L L +L+LS EP+S L+ F E +L L +DL+ R + A S
Sbjct: 374 NLSHLQSLNLSYNEPLS-----LKTEAFK------ECPQLEL--LDLAFTRLKVKDAQSP 420
Query: 156 LPNL---QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH--AVSCQVPEFVANLLNLTT 210
NL +VLNLS+ LL L +L + L+ NH + Q + L L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL 247
L LS CDL + + +DLS+N L S+
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 57/207 (27%)
Query: 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178
+I + + QNLT LRELYL+ ++S P LA
Sbjct: 99 KITDISALQNLTNLRELYLNEDNIS----------DISP-------------------LA 129
Query: 179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238
NL + L NH +S P ++N L L +++ + P + + L +L L+
Sbjct: 130 NLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185
Query: 239 YNSLLQ-------GSLPHFPXXXXXXXXXXXXTSFSGKLPD--SIGNLENLASVDVSSCN 289
YN + SL +F T++ ++ D + N L S+ + +
Sbjct: 186 YNQIEDISPLASLTSLHYF-------------TAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 290 FTRPIPTSMANLTQLFHLDFSSNHFSD 316
T P +ANL+QL L+ +N SD
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD 257
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 26/229 (11%)
Query: 6 KLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGL---DLSAEPIL 62
KL+ I M N+ I D+ TP A ++ + T + D D ++ L +LS+ I
Sbjct: 90 KLVDILMNNNQIADI--TPLANLTNLTGLT-LFNNQITDIDPLKNLTNLNRLELSSNTI- 145
Query: 63 IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
+ S L L LQ L+ G + P+ ++L L LD+SS + +S S ++ N
Sbjct: 146 ----SDISALSGLTSLQQLSFGNQVTDLKPL-ANLTTLERLDISSNK-VSDISVLAKLTN 199
Query: 123 F-------NFFQNLTELRELY-LDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
N ++T L L LD + L+G + + ++ L NL L+L+N +S+
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-- 257
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP 223
L+ L L+ ++L N +S P +A L LT L+L++ L P
Sbjct: 258 APLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDISP 303
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 26/229 (11%)
Query: 6 KLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGL---DLSAEPIL 62
KL+ I M N+ I D+ TP A ++ + T + D D ++ L +LS+ I
Sbjct: 91 KLVDILMNNNQIADI--TPLANLTNLTGLT-LFNNQITDIDPLKNLTNLNRLELSSNTI- 146
Query: 63 IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
+ S L L LQ L+ G + P+ ++L L LD+SS + +S S ++ N
Sbjct: 147 ----SDISALSGLTSLQQLSFGNQVTDLKPL-ANLTTLERLDISSNK-VSDISVLAKLTN 200
Query: 123 F-------NFFQNLTELRELY-LDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
N ++T L L LD + L+G + + ++ L NL L+L+N +S+
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-- 258
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP 223
L+ L L+ ++L N +S P +A L LT L+L++ L P
Sbjct: 259 APLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDISP 304
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 6 KLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGL---DLSAEPIL 62
KL+ I M N+ I D+ TP A ++ + T + D D ++ L +LS+ I
Sbjct: 86 KLVDILMNNNQIADI--TPLANLTNLTGLT-LFNNQITDIDPLKNLTNLNRLELSSNTI- 141
Query: 63 IGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPN 122
+ S L L LQ LN ++L L LD+SS + +S S ++ N
Sbjct: 142 ----SDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTN 196
Query: 123 F-------NFFQNLTELRELY-LDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN 174
N ++T L L LD + L+G + + ++ L NL L+L+N +S+
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-- 254
Query: 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP 223
L+ L L+ ++L N +S P +A L LT L+L++ L P
Sbjct: 255 APLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLEDISP 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,317,106
Number of Sequences: 62578
Number of extensions: 354830
Number of successful extensions: 967
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 144
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)