Query 035693
Match_columns 348
No_of_seqs 210 out of 3453
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.9E-37 1.1E-41 311.1 26.1 330 2-347 27-376 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-30 2.7E-35 264.5 19.9 287 49-346 93-399 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.4E-26 2.9E-31 206.7 6.2 285 49-344 78-382 (873)
4 KOG4194 Membrane glycoprotein 99.9 5.2E-27 1.1E-31 209.3 2.9 281 49-345 125-409 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.6E-25 1E-29 198.6 -2.1 246 50-315 8-258 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7.5E-25 1.6E-29 197.3 -4.3 275 50-347 56-358 (1255)
7 PRK15387 E3 ubiquitin-protein 99.8 2.3E-18 5E-23 165.3 15.7 247 51-345 203-463 (788)
8 cd00116 LRR_RI Leucine-rich re 99.8 7.8E-20 1.7E-24 162.9 3.5 281 54-339 3-319 (319)
9 PLN03210 Resistant to P. syrin 99.8 2.4E-17 5.1E-22 168.8 21.1 261 49-337 611-903 (1153)
10 PLN03210 Resistant to P. syrin 99.8 2.4E-17 5.1E-22 168.8 19.6 216 77-313 590-836 (1153)
11 PRK15370 E3 ubiquitin-protein 99.8 5.7E-17 1.2E-21 156.5 18.6 227 76-345 178-405 (754)
12 KOG0618 Serine/threonine phosp 99.7 5.7E-20 1.2E-24 172.5 -4.5 244 75-338 240-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 8.7E-21 1.9E-25 162.8 -9.9 238 51-315 70-310 (565)
14 cd00116 LRR_RI Leucine-rich re 99.7 2E-18 4.4E-23 153.8 3.9 258 80-341 2-292 (319)
15 PRK15370 E3 ubiquitin-protein 99.7 5.9E-17 1.3E-21 156.4 13.8 251 44-340 174-428 (754)
16 KOG0472 Leucine-rich repeat pr 99.7 6.1E-20 1.3E-24 157.7 -8.1 260 51-340 47-310 (565)
17 PRK15387 E3 ubiquitin-protein 99.7 5.5E-16 1.2E-20 149.0 14.5 236 49-322 222-465 (788)
18 KOG0618 Serine/threonine phosp 99.7 4.1E-18 8.8E-23 160.2 -2.5 266 51-346 158-425 (1081)
19 KOG4237 Extracellular matrix p 99.6 5E-18 1.1E-22 145.7 -4.6 129 49-192 67-199 (498)
20 KOG4237 Extracellular matrix p 99.6 1.9E-17 4.1E-22 142.2 -5.4 248 77-339 68-358 (498)
21 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.4E-21 120.7 -5.3 181 126-316 29-213 (264)
22 KOG0617 Ras suppressor protein 99.5 2E-16 4.3E-21 121.2 -6.3 163 96-275 31-193 (264)
23 KOG1909 Ran GTPase-activating 99.5 7.3E-15 1.6E-19 124.6 2.3 233 49-290 30-310 (382)
24 KOG1909 Ran GTPase-activating 99.4 1.4E-13 3E-18 117.0 2.2 241 71-314 25-310 (382)
25 KOG3207 Beta-tubulin folding c 99.3 7.7E-13 1.7E-17 115.5 2.5 214 96-317 119-341 (505)
26 KOG3207 Beta-tubulin folding c 99.3 9.7E-13 2.1E-17 114.9 1.3 209 73-292 118-340 (505)
27 PLN03150 hypothetical protein; 99.3 5.6E-11 1.2E-15 114.4 13.1 145 3-191 371-525 (623)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 92.8 6.0 126 204-335 17-148 (175)
29 PF14580 LRR_9: Leucine-rich r 99.1 9.9E-11 2.1E-15 93.2 5.4 108 72-192 15-124 (175)
30 KOG1259 Nischarin, modulator o 99.0 2.7E-11 5.8E-16 101.4 -0.4 129 181-316 284-413 (490)
31 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 102.5 8.1 180 71-269 111-292 (394)
32 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 98.9 1.0 221 50-292 183-413 (490)
33 COG4886 Leucine-rich repeat (L 99.0 1.3E-09 2.8E-14 100.0 9.0 177 128-316 114-291 (394)
34 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 105.1 8.8 113 232-344 420-532 (623)
35 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.8E-16 110.5 -3.9 198 127-338 72-271 (722)
36 KOG0532 Leucine-rich repeat (L 99.0 2.2E-11 4.9E-16 109.9 -3.7 197 96-313 73-271 (722)
37 KOG4341 F-box protein containi 98.8 1.7E-10 3.7E-15 100.6 -2.8 280 49-337 138-436 (483)
38 KOG4658 Apoptotic ATPase [Sign 98.8 5.1E-09 1.1E-13 103.5 6.1 207 72-292 519-731 (889)
39 COG5238 RNA1 Ran GTPase-activa 98.7 6E-09 1.3E-13 86.3 3.0 234 49-292 30-317 (388)
40 KOG2120 SCF ubiquitin ligase, 98.7 4.7E-10 1E-14 93.9 -4.2 179 158-337 186-373 (419)
41 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.2E-14 100.1 -1.6 223 71-317 90-320 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 67.2 2.8 59 255-313 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.7 4.5E-10 9.8E-15 94.0 -4.9 136 126-264 206-348 (419)
44 PF13855 LRR_8: Leucine rich r 98.7 1.5E-08 3.2E-13 66.4 2.9 61 278-339 1-61 (61)
45 KOG4341 F-box protein containi 98.6 2.1E-09 4.5E-14 94.0 -3.7 275 49-332 164-457 (483)
46 KOG0531 Protein phosphatase 1, 98.5 2.9E-08 6.2E-13 91.6 2.3 246 74-343 70-321 (414)
47 KOG2982 Uncharacterized conser 98.5 1.2E-08 2.7E-13 85.5 -0.3 223 77-308 46-285 (418)
48 KOG2982 Uncharacterized conser 98.5 1.3E-08 2.8E-13 85.4 -0.3 212 99-318 46-265 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.5 1.4E-07 2.9E-12 78.4 5.0 241 96-340 28-316 (388)
50 PF08263 LRRNT_2: Leucine rich 98.5 1.7E-07 3.8E-12 56.2 4.2 40 3-46 2-43 (43)
51 KOG1859 Leucine-rich repeat pr 98.5 3.3E-09 7.3E-14 98.7 -6.1 127 182-316 165-293 (1096)
52 KOG4658 Apoptotic ATPase [Sign 98.4 2.1E-07 4.6E-12 92.2 4.9 83 72-167 567-652 (889)
53 KOG3665 ZYG-1-like serine/thre 98.2 5.1E-07 1.1E-11 87.3 2.0 90 126-220 169-264 (699)
54 KOG1859 Leucine-rich repeat pr 98.2 1.8E-08 3.8E-13 94.1 -8.2 204 17-242 49-291 (1096)
55 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.6E-11 83.9 2.5 108 181-290 122-232 (699)
56 KOG4579 Leucine-rich repeat (L 97.9 3.1E-07 6.8E-12 68.5 -4.2 133 207-344 28-163 (177)
57 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.8E-10 47.6 3.6 37 279-316 2-38 (44)
58 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.6E-10 62.8 5.0 89 126-217 60-151 (233)
59 KOG4579 Leucine-rich repeat (L 97.9 5.5E-07 1.2E-11 67.2 -3.6 136 181-320 27-164 (177)
60 KOG1644 U2-associated snRNP A' 97.8 4.6E-05 9.9E-10 60.9 5.6 107 130-241 42-151 (233)
61 PF12799 LRR_4: Leucine Rich r 97.8 3.5E-05 7.6E-10 46.3 3.4 38 254-292 1-38 (44)
62 PRK15386 type III secretion pr 97.7 0.00031 6.7E-09 63.3 10.5 139 126-289 48-188 (426)
63 KOG2739 Leucine-rich acidic nu 97.7 2.4E-05 5.3E-10 65.0 2.5 130 51-190 20-152 (260)
64 KOG1947 Leucine rich repeat pr 97.6 3E-05 6.6E-10 73.0 3.0 13 253-265 361-373 (482)
65 PRK15386 type III secretion pr 97.6 0.00043 9.3E-09 62.5 10.0 135 96-265 50-188 (426)
66 KOG2739 Leucine-rich acidic nu 97.4 9.8E-05 2.1E-09 61.4 2.9 105 229-335 42-151 (260)
67 KOG2123 Uncharacterized conser 97.3 1.7E-05 3.6E-10 66.5 -3.3 86 44-141 14-99 (388)
68 KOG2123 Uncharacterized conser 97.2 2.7E-05 5.9E-10 65.3 -3.3 101 97-212 18-123 (388)
69 PF13306 LRR_5: Leucine rich r 97.0 0.0035 7.5E-08 47.5 7.0 105 202-311 8-112 (129)
70 PF13306 LRR_5: Leucine rich r 96.8 0.0035 7.6E-08 47.5 6.2 10 229-238 80-89 (129)
71 KOG1947 Leucine rich repeat pr 96.8 0.00016 3.4E-09 68.2 -2.1 32 298-329 358-389 (482)
72 PF00560 LRR_1: Leucine Rich R 96.2 0.0019 4E-08 32.3 0.7 19 328-347 1-19 (22)
73 KOG4308 LRR-containing protein 95.8 0.00012 2.6E-09 68.2 -8.6 187 132-318 89-306 (478)
74 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.5E-07 27.2 1.1 16 328-344 2-17 (17)
75 KOG4308 LRR-containing protein 94.2 0.00092 2E-08 62.3 -7.6 188 51-243 89-303 (478)
76 smart00369 LRR_TYP Leucine-ric 93.5 0.045 9.7E-07 28.4 1.3 19 327-346 2-20 (26)
77 smart00370 LRR Leucine-rich re 93.5 0.045 9.7E-07 28.4 1.3 19 327-346 2-20 (26)
78 KOG3864 Uncharacterized conser 92.8 0.034 7.4E-07 44.9 0.2 82 131-215 102-185 (221)
79 KOG3864 Uncharacterized conser 91.4 0.044 9.6E-07 44.2 -0.6 81 159-239 103-185 (221)
80 smart00364 LRR_BAC Leucine-ric 90.7 0.16 3.5E-06 26.2 1.3 18 327-345 2-19 (26)
81 PF13516 LRR_6: Leucine Rich r 87.3 0.28 6.2E-06 24.7 0.8 12 131-142 3-14 (24)
82 KOG4242 Predicted myosin-I-bin 78.9 15 0.00033 34.1 8.6 85 255-339 355-452 (553)
83 KOG3763 mRNA export factor TAP 77.2 1.4 3.1E-05 41.2 1.8 13 128-140 242-254 (585)
84 smart00368 LRR_RI Leucine rich 73.4 2.1 4.6E-05 22.5 1.1 14 303-316 3-16 (28)
85 KOG0473 Leucine-rich repeat pr 70.0 0.093 2E-06 43.5 -6.8 86 227-315 39-124 (326)
86 smart00367 LRR_CC Leucine-rich 69.8 3.4 7.4E-05 21.1 1.4 10 182-191 3-12 (26)
87 smart00365 LRR_SD22 Leucine-ri 68.6 4.5 9.6E-05 21.0 1.7 11 99-109 3-13 (26)
88 KOG3763 mRNA export factor TAP 63.2 3.6 7.8E-05 38.7 1.2 63 253-317 217-285 (585)
89 KOG0473 Leucine-rich repeat pr 58.6 0.21 4.5E-06 41.5 -6.8 89 248-340 36-124 (326)
90 KOG4242 Predicted myosin-I-bin 57.8 12 0.00027 34.7 3.5 59 182-241 215-279 (553)
91 KOG3735 Tropomodulin and leiom 31.9 23 0.00049 31.4 1.0 88 96-190 196-292 (353)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-37 Score=311.07 Aligned_cols=330 Identities=31% Similarity=0.468 Sum_probs=214.2
Q ss_pred chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEE
Q 035693 2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSL 81 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L 81 (348)
+.+|..+|..||+++. +|. ..+.+|..+.++|.|.|++|+...+|+.|+|+++ .+.+.++. .+..+++|+.|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~----~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~-~i~~~~~~--~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPL----KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK-NISGKISS--AIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCc----ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC-CccccCCh--HHhCCCCCCEE
Confidence 4678999999999983 333 5689999999999999999987789999999999 88777765 78899999999
Q ss_pred eCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcc----------------eeecCCChhhhcCCCCCcEEEccCcC
Q 035693 82 NLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFS----------------WRLEIPNFNFFQNLTELRELYLDNVD 141 (348)
Q Consensus 82 ~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~----------------~~~~~~~~~~~~~l~~L~~L~l~~~~ 141 (348)
++++|.+++. +|. .+++|++|++++|.+.+... ....+|.. +.++++|++|++++|.
T Consensus 99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH--HhcCCCCCEEECccCc
Confidence 9999988765 554 67888888888887642100 01112222 4445555555555555
Q ss_pred CCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCc
Q 035693 142 LSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK 221 (348)
Q Consensus 142 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 221 (348)
+....+ ..+.++++|++|++++|.+.+.+|..+..+++|++|++++| ...+..+..+..+++|++|++++|.+.+.
T Consensus 176 l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 176 LVGKIP---NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccccCC---hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 443332 33445555555555555555545555555555555555555 23334455555555666666666655555
Q ss_pred ccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCC
Q 035693 222 FPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANL 301 (348)
Q Consensus 222 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 301 (348)
.|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 55555556666666666655544444445555666666666666665666666666666677776666666666666666
Q ss_pred CCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 302 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~ 347 (348)
++|+.|++++|.+.+.+|..+... ++|+.|++++|.++|.+|.++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhH
Confidence 777777777777766566544433 667777777777777776543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.2e-30 Score=264.49 Aligned_cols=287 Identities=31% Similarity=0.389 Sum_probs=238.3
Q ss_pred CCEEEEeCCCCccccccccCCcccc-cccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcc-----------
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLF-SLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFS----------- 115 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----------- 115 (348)
++|+.|+|++| .+.+.+|. .+. .+++|++|++++|.+++. +|. .+++|++|++++|.+.....
T Consensus 93 ~~L~~L~Ls~n-~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNN-QLSGPIPD--DIFTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCC-ccCCcCCh--HHhccCCCCCEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 67888999988 77777775 443 777888888877777654 443 45555555555554432100
Q ss_pred -------eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693 116 -------WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188 (348)
Q Consensus 116 -------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 188 (348)
....+|.. +.++++|++|++++|.+....+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 169 L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 169 LDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred EECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 12234444 7899999999999999886655 57889999999999999999889999999999999999
Q ss_pred ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693 189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268 (348)
Q Consensus 189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~ 268 (348)
++| ...+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 244 ~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 244 VYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 999 4555778889999999999999999988889899999999999999998766666667789999999999999998
Q ss_pred CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+... ++|+.|++++|.++|.+|..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHH
Confidence 889999999999999999999998899999999999999999999998888766543 78999999999999999864
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-26 Score=206.65 Aligned_cols=285 Identities=25% Similarity=0.214 Sum_probs=181.2
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceee-------
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRL------- 118 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~------- 118 (348)
...++|++++| .+..--+. .+.++++|+.+++..|.++. +|. ...+|++|++.+|.+.....-.+
T Consensus 78 ~~t~~LdlsnN-kl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeecccc-ccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 45778999998 77644443 56788889998888888877 455 34457777777776543200000
Q ss_pred ----------cCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693 119 ----------EIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188 (348)
Q Consensus 119 ----------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 188 (348)
.++. ..+..-.++++|+|++|++++... ..|..+.+|..|.++.|.++...+..|+++++|+.|+|
T Consensus 153 slDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~---~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 153 SLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLET---GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhchhhcccC-CCCCCCCCceEEeecccccccccc---ccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 0110 123333456666666666665544 44555556666666666666655556666666666666
Q ss_pred ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693 189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268 (348)
Q Consensus 189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~ 268 (348)
..|++ ...-...|.++++|+.|.+..|.+...--..|..+.++++|+++.|++....-..+.++..|+.|+++.|.+..
T Consensus 229 nrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 229 NRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred cccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 66632 22223345666666666666666653333346666777777777776665556666667777777777777765
Q ss_pred CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693 269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip 344 (348)
.-++.+.-+++|++|+|++|+++..-++.+..+..|++|+|+.|.+.. +....+.++.+|+.|||+.|.+++.|-
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 556666666777777777777777666666667777777777777754 555666666888888888888876653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.2e-27 Score=209.26 Aligned_cols=281 Identities=24% Similarity=0.304 Sum_probs=231.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
+|++.|+|..| .+...-.. .++.++.|+.|||+.|.|+....+. .-.++++|++++|.+++. .. ..|
T Consensus 125 ghl~~L~L~~N-~I~sv~se--~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-----~~---~~F 193 (873)
T KOG4194|consen 125 GHLEKLDLRHN-LISSVTSE--ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-----ET---GHF 193 (873)
T ss_pred cceeEEeeecc-ccccccHH--HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-----cc---ccc
Confidence 57888888877 55433332 6777888999999998888754444 445899999999987632 22 336
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
..+.+|..|.|+.|+++..+. ..|.++++|+.|++..|.+...-.-.|..+++|+.|.+..|.+ ..--...|..+.
T Consensus 194 ~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLE 269 (873)
T ss_pred cccchheeeecccCcccccCH---HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeec
Confidence 778899999999999999887 6788899999999999999876577899999999999999954 333455678899
Q ss_pred CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~ 286 (348)
++++|+++.|++...-..++..+++|+.|+++.|.+...........++|+.|+++.|+++..-+..+..+..|++|.|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 99999999999986666778999999999999999888888888889999999999999996666788899999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCccCCccCc--hhhhhhcCCCeeecccCcccccCCC
Q 035693 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT--LRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
+|.+...-..++..+++|+.|||++|.+...+.. ..+.++++|+.|++.+|++. .||.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~k 409 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPK 409 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecch
Confidence 9999986666788899999999999998753332 34455699999999999996 7775
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.6e-25 Score=198.61 Aligned_cols=246 Identities=26% Similarity=0.382 Sum_probs=109.3
Q ss_pred CEEEEeCCCCcccc-ccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 50 HVIGLDLSAEPILI-GSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 50 ~l~~L~ls~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
-|+.+|+++| .+. +..|. .+..|+.++.|.|....+.. +|+ .+.+|++|.+++|.+.+ +. ..
T Consensus 8 FVrGvDfsgN-DFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~-------vh--GE 73 (1255)
T KOG0444|consen 8 FVRGVDFSGN-DFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLIS-------VH--GE 73 (1255)
T ss_pred eeecccccCC-cCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHh-------hh--hh
Confidence 3555556655 333 33443 45555555555555544443 343 44555555555554321 11 11
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+..+|.|+.+.+..|++..... +..+..+..|..|++++|.+.. .|..+...+++-.|+|++|. +.....+.+-++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGi--P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~-IetIPn~lfinL 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGI--PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNN-IETIPNSLFINL 149 (1255)
T ss_pred hccchhhHHHhhhccccccCCC--Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCc-cccCCchHHHhh
Confidence 3444445555554444432211 1234444455555555554443 44444444444455555542 222222333344
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-CCCCccccCCCCCCEEe
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-GKLPDSIGNLENLASVD 284 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~~~~L~~L~ 284 (348)
..|-+|++++|++. .+|+.+..+..|++|.+++|++.......+..+.+|+.|.+++.+-+ ..+|.++..+.+|+.++
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 44444555555444 44444444444555555554443333333333444444444444322 12344444444444444
Q ss_pred ecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693 285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFS 315 (348)
Q Consensus 285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 315 (348)
++.|.+.. +|+.+-.+++|+.|+|++|+|+
T Consensus 229 lS~N~Lp~-vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 229 LSENNLPI-VPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccccCCCc-chHHHhhhhhhheeccCcCcee
Confidence 44444443 4444444444444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=7.5e-25 Score=197.29 Aligned_cols=275 Identities=24% Similarity=0.301 Sum_probs=152.1
Q ss_pred CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
++++|.++.| .+.. +. +.+..++.|+.+.++.|++...++|. .+..|..|++++|.+. .+|.. +
T Consensus 56 kLEHLs~~HN-~L~~-vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~--L 122 (1255)
T KOG0444|consen 56 KLEHLSMAHN-QLIS-VH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTN--L 122 (1255)
T ss_pred hhhhhhhhhh-hhHh-hh--hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-------hcchh--h
Confidence 5666666666 4431 21 25566666777777777666666666 5666677777776643 44444 5
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC--------------
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH-------------- 192 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------- 192 (348)
..-+++-+|+|++|++..++. .-+.++..|-.|++++|.+.. +|..+..+..|++|.|++|+
T Consensus 123 E~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred hhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 555566666666666655544 234445555555555555444 34344444455555555543
Q ss_pred ----------CCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693 193 ----------AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262 (348)
Q Consensus 193 ----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls 262 (348)
..-..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++.. -.......+|++|++|
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccc
Confidence 222334444444555555555555554 4555555555566666665554211 1122224456666666
Q ss_pred cCCCCCCCCccccCCCCCCEEeecCCccC-CCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 263 NTSFSGKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
.|+++ .+|.+++.+++|+.|.+.+|++. +-+|..++.+.+|+++..++|.+.= .|..+..+ ..|+.|.|+.|++-
T Consensus 277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC-~kL~kL~L~~NrLi- 352 (1255)
T KOG0444|consen 277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC-VKLQKLKLDHNRLI- 352 (1255)
T ss_pred cchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cchhhhhh-HHHHHhccccccee-
Confidence 66665 55666666666666666666555 2355556666666666666666532 55554433 56777777777664
Q ss_pred cCCCCC
Q 035693 342 GISSNI 347 (348)
Q Consensus 342 ~ip~~~ 347 (348)
++|++|
T Consensus 353 TLPeaI 358 (1255)
T KOG0444|consen 353 TLPEAI 358 (1255)
T ss_pred echhhh
Confidence 566543
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.3e-18 Score=165.27 Aligned_cols=247 Identities=22% Similarity=0.255 Sum_probs=144.9
Q ss_pred EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693 51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT 130 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (348)
-..|+++.+ .+. .+|. .+. ++|+.|++++|+++. +|..+++|++|++++|.++. +|.. .+
T Consensus 203 ~~~LdLs~~-~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~lp~~Lk~LdLs~N~Lts-------LP~l-----p~ 262 (788)
T PRK15387 203 NAVLNVGES-GLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALPPELRTLEVSGNQLTS-------LPVL-----PP 262 (788)
T ss_pred CcEEEcCCC-CCC-cCCc--chh--cCCCEEEccCCcCCC--CCCCCCCCcEEEecCCccCc-------ccCc-----cc
Confidence 356777777 665 4664 343 367777777777776 56667777777777776542 2221 23
Q ss_pred CCcEEEccCcCCCCcchhhhhhh--------------CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCC
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAM--------------SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC 196 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 196 (348)
+|+.|++++|.+...+. .+..+ ...++|++|++++|.+.. +|.. ..+|+.|++++|.. .
T Consensus 263 sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L-~- 335 (788)
T PRK15387 263 GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL-T- 335 (788)
T ss_pred ccceeeccCCchhhhhh-chhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcc-c-
Confidence 55555555555443221 00000 012345555555554443 2211 12344444444422 1
Q ss_pred ChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693 197 QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276 (348)
Q Consensus 197 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~ 276 (348)
.++. ....|++|++++|.+. .+|.. .++|+.|++++|.+.. ++.+ ..+|+.|++++|.+. .+|..
T Consensus 336 ~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~--LP~l--~~~L~~LdLs~N~Lt-~LP~l--- 400 (788)
T PRK15387 336 SLPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS--LPAL--PSGLKELIVSGNRLT-SLPVL--- 400 (788)
T ss_pred cccc---cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc--Cccc--ccccceEEecCCccc-CCCCc---
Confidence 1111 1125677777777766 34432 2456666777766542 2322 246888888888887 45543
Q ss_pred CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
.++|+.|++++|.+.. +|.. ..+|..|++++|+++. +|..+.. +++|+.|+|++|+++|.+|.
T Consensus 401 ~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~-L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhh-ccCCCeEECCCCCCCchHHH
Confidence 2578888888888876 5643 2467888999999874 7776554 47899999999999987664
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=7.8e-20 Score=162.88 Aligned_cols=281 Identities=22% Similarity=0.203 Sum_probs=181.4
Q ss_pred EeCCCCcccc-ccccCCcccccccccCEEeCCCCCCCCCCC---CC---CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 54 LDLSAEPILI-GSLENASGLFSLQYLQSLNLGFTLFYGFPM---PS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 54 L~ls~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
|+|..+ .+. +.... .+..++.|+.|+++++.+++.+. +. ..++|++++++++.+.........++ ..+
T Consensus 3 l~L~~~-~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~--~~l 77 (319)
T cd00116 3 LSLKGE-LLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL--QGL 77 (319)
T ss_pred cccccC-cccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH--HHH
Confidence 455555 443 23332 45667778888888887755321 11 66778888888876531000001111 236
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc----chHHhhhc-cCCCEEEcccCCCCCC---Ch
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANL-LSLSVIRLRDNHAVSC---QV 198 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~---~~ 198 (348)
..+++|+.|++++|.+..........+...++|++|++++|.+.+. +...+..+ ++|++|++++|..... .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 6788999999999888754443222222225699999999988742 33455666 8899999999854321 23
Q ss_pred hhhhhcCCCCCEEEccCCcCCCc----ccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCCC
Q 035693 199 PEFVANLLNLTTLDLSQCDLHGK----FPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGKL 270 (348)
Q Consensus 199 ~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~~ 270 (348)
...+..+.+|++|++++|.+.+. ++..+...++|+.|++++|.+...... .+..+++|++|++++|.+++..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 44566777899999999988742 333455567899999999877544332 3445788999999999887422
Q ss_pred Ccccc-----CCCCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCccCch----hhhhhcCCCeeecccC
Q 035693 271 PDSIG-----NLENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPIPTL----RLYMSRNLNYLNLSSN 337 (348)
Q Consensus 271 ~~~l~-----~~~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~l~~n 337 (348)
...+. ..+.|++|++++|.+++ .++..+...++|+.+++++|.+.+..... .....+.|+++++.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 22221 23689999999999873 23445566689999999999998642222 2222257899999887
Q ss_pred cc
Q 035693 338 DL 339 (348)
Q Consensus 338 ~l 339 (348)
++
T Consensus 318 ~~ 319 (319)
T cd00116 318 SF 319 (319)
T ss_pred CC
Confidence 64
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.4e-17 Score=168.81 Aligned_cols=261 Identities=22% Similarity=0.255 Sum_probs=152.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.+|++|+++++ .+. .++. .+..+++|+.|+++++..... +|. .+++|++|++++|.. -..+|.. +
T Consensus 611 ~~L~~L~L~~s-~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~------L~~lp~s--i 677 (1153)
T PLN03210 611 ENLVKLQMQGS-KLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSS------LVELPSS--I 677 (1153)
T ss_pred cCCcEEECcCc-ccc-cccc--ccccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCC------ccccchh--h
Confidence 45566666665 443 3333 455666666666665432221 333 566666666666542 1233433 5
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhh------
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPE------ 200 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------ 200 (348)
.++++|+.|++++|......+ .. .++++|++|++++|.....+|.. ..+|++|++.++.+.. ++.
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp---~~-i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~ 748 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILP---TG-INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLEN 748 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccC---Cc-CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccccccc
Confidence 666666666666654222222 11 14555666666655433323321 2344555555442111 111
Q ss_pred ------------------------hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCC
Q 035693 201 ------------------------FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSL 256 (348)
Q Consensus 201 ------------------------~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 256 (348)
.....++|+.|++++|.....+|..+..+++|+.|++++|.... .++....+++|
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL 827 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESL 827 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCcccc
Confidence 11123467788888877666778888888888888888875322 23333357788
Q ss_pred cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693 257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336 (348)
Q Consensus 257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 336 (348)
++|++++|.....+|.. ..+|+.|++++|.+.. +|..+..+++|+.|++++|.-...++..... +++|+.+++++
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~~ 902 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVDFSD 902 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeeecCC
Confidence 88888887654455543 3578888888888876 7777888888999999886644446654433 36788888887
Q ss_pred C
Q 035693 337 N 337 (348)
Q Consensus 337 n 337 (348)
|
T Consensus 903 C 903 (1153)
T PLN03210 903 C 903 (1153)
T ss_pred C
Confidence 7
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2.4e-17 Score=168.80 Aligned_cols=216 Identities=25% Similarity=0.309 Sum_probs=97.8
Q ss_pred ccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693 77 YLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154 (348)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 154 (348)
+|+.|.+.++.+.. +|. .+.+|++|++.++.+. .++.. +..+++|+.++++++......+ .+.
T Consensus 590 ~Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~-------~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip----~ls 654 (1153)
T PLN03210 590 KLRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLE-------KLWDG--VHSLTGLRNIDLRGSKNLKEIP----DLS 654 (1153)
T ss_pred ccEEEEecCCCCCC--CCCcCCccCCcEEECcCcccc-------ccccc--cccCCCCCEEECCCCCCcCcCC----ccc
Confidence 45555555554444 232 4455555555555432 11221 3445555555555443222111 234
Q ss_pred CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234 (348)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 234 (348)
.+++|++|++++|.....+|..+..+++|+.|++++|.... .++..+ ++++|+.|++++|.....+|.. .++|+.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 45555555555554433455555555555555555543222 122222 3444555555444332222211 123333
Q ss_pred EEccCCCCCCCCC------------------------C-----CCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693 235 LDLSYNSLLQGSL------------------------P-----HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285 (348)
Q Consensus 235 L~l~~~~l~~~~~------------------------~-----~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L 285 (348)
|++.++.+..... . .+...++|++|++++|.....+|..++.+++|+.|++
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 3333333211000 0 0011245666666666555456666666666666666
Q ss_pred cCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693 286 SSCNFTRPIPTSMANLTQLFHLDFSSNH 313 (348)
Q Consensus 286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 313 (348)
++|.....+|... .+++|+.|++++|.
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 6664444344433 34455555555543
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.7e-17 Score=156.47 Aligned_cols=227 Identities=21% Similarity=0.328 Sum_probs=131.7
Q ss_pred cccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693 76 QYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 154 (348)
.+.+.|+++++.++. +|. -.++|+.|++++|.++ .+|.. + .++|+.|++++|.+...+. .+
T Consensus 178 ~~~~~L~L~~~~Lts--LP~~Ip~~L~~L~Ls~N~Lt-------sLP~~--l--~~nL~~L~Ls~N~LtsLP~----~l- 239 (754)
T PRK15370 178 NNKTELRLKILGLTT--IPACIPEQITTLILDNNELK-------SLPEN--L--QGNIKTLYANSNQLTSIPA----TL- 239 (754)
T ss_pred cCceEEEeCCCCcCc--CCcccccCCcEEEecCCCCC-------cCChh--h--ccCCCEEECCCCccccCCh----hh-
Confidence 346777887777776 454 3457888888888764 23332 2 2477888888887765432 11
Q ss_pred CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234 (348)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 234 (348)
..+|+.|++++|.+.. +|..+. .+|+.|++++|.. . .++..+. ++|+.|++++|.+. .+|..+. +.|+.
T Consensus 240 -~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L-~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~ 308 (754)
T PRK15370 240 -PDTIQEMELSINRITE-LPERLP--SALQSLDLFHNKI-S-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITH 308 (754)
T ss_pred -hccccEEECcCCccCc-CChhHh--CCCCEEECcCCcc-C-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHH
Confidence 2367778888777764 454443 4677788777743 2 2343332 36777777777776 3444332 35666
Q ss_pred EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693 235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 314 (348)
|++++|.+.... ..+ .++|++|++++|.++ .+|..+. ++|+.|++++|++.. +|..+ .++|+.|++++|++
T Consensus 309 L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 309 LNVQSNSLTALP-ETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred HHhcCCccccCC-ccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcC
Confidence 677766653211 111 245666666666665 3454432 466666666666654 44433 24666666666666
Q ss_pred CCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 315 SDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 315 ~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
.. +|..+. ..|+.|++++|+++ .+|+
T Consensus 380 t~-LP~~l~---~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 380 TN-LPENLP---AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred CC-CCHhHH---HHHHHHhhccCCcc-cCch
Confidence 54 444322 24566666666665 4443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=5.7e-20 Score=172.49 Aligned_cols=244 Identities=26% Similarity=0.311 Sum_probs=158.0
Q ss_pred ccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693 75 LQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK 151 (348)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 151 (348)
..+|++++++++.++. +|+ .|.+|+.|+..+|.++ .+|.. +.....|+.+.+.+|++...++
T Consensus 240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-------~lp~r--i~~~~~L~~l~~~~nel~yip~---- 304 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-------ALPLR--ISRITSLVSLSAAYNELEYIPP---- 304 (1081)
T ss_pred cccceeeecchhhhhc--chHHHHhcccceEecccchhHH-------hhHHH--HhhhhhHHHHHhhhhhhhhCCC----
Confidence 3455555555555554 233 4555555555555432 22222 3444455555555555544332
Q ss_pred hhCCCCCCcEEEccCccCCCcchHHhhhcc-CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLL-SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP 230 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 230 (348)
.......|++|++..|.+....+..+.... .|+.|..+.++..+.. ...=..++.|+.|++.+|.+++...+.+..+.
T Consensus 305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 234456666666666666653222222222 2445555544222111 00001334688899999999877777788899
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCC
Q 035693 231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS 310 (348)
Q Consensus 231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 310 (348)
+|+.|++++|++.......+.++..|+.|++|||+++ .+|+.+..+..|++|...+|.+.. +| .+..++.|+.+|++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecc
Confidence 9999999999886666667777889999999999998 788888889999999999999987 77 56789999999999
Q ss_pred CCccCCccCchhhhhhcCCCeeecccCc
Q 035693 311 SNHFSDPIPTLRLYMSRNLNYLNLSSND 338 (348)
Q Consensus 311 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 338 (348)
.|.+....-...... ++|++||+++|.
T Consensus 461 ~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cchhhhhhhhhhCCC-cccceeeccCCc
Confidence 999875322222222 789999999985
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=8.7e-21 Score=162.84 Aligned_cols=238 Identities=26% Similarity=0.353 Sum_probs=147.7
Q ss_pred EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693 51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 127 (348)
++.++++++ .+. .+|. +++.+..++.++.++|+++. +|. ..+.|+++++++|.+. .+++. +.
T Consensus 70 l~vl~~~~n-~l~-~lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-------el~~~--i~ 134 (565)
T KOG0472|consen 70 LTVLNVHDN-KLS-QLPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-------ELPDS--IG 134 (565)
T ss_pred eeEEEeccc-hhh-hCCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-------ecCch--HH
Confidence 556666666 443 3343 56666666666666666655 343 5666666666666642 44444 56
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 207 (348)
.+..|+.++..+|++...++ .+.++..|..+++.+|.+....+..+. +..|++|+...| .. ..+|+.++.+.+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~----~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L-~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPE----DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LL-ETLPPELGGLES 207 (565)
T ss_pred HHhhhhhhhccccccccCch----HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hh-hcCChhhcchhh
Confidence 66666666666666665443 455566666666666666653333333 666667766665 22 246666666767
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
|+-|++..|.+. .+| .|+.++.|.++++..|.+..........++++..||+.+|+++ +.|+.+.-+.+|++|++++
T Consensus 208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccC
Confidence 777777777665 455 4666667777777766654444444445666777777777776 6666666666777777777
Q ss_pred CccCCCCcccccCCCCCCEEeCCCCccC
Q 035693 288 CNFTRPIPTSMANLTQLFHLDFSSNHFS 315 (348)
Q Consensus 288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 315 (348)
|.+++ .|..++++ .|+.|-+.||++.
T Consensus 285 N~is~-Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 285 NDISS-LPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred Ccccc-CCcccccc-eeeehhhcCCchH
Confidence 77766 66666666 6777777777664
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2e-18 Score=153.75 Aligned_cols=258 Identities=21% Similarity=0.217 Sum_probs=181.6
Q ss_pred EEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCC---cchhhhhhh
Q 035693 80 SLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSG---RRTEWCKAM 153 (348)
Q Consensus 80 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~ 153 (348)
.|+|..+.+++..... .+.+|++|+++++.++... ...++ ..+...+.++.++++++.+.. ....+...+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~--~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA--AKALA--SALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH--HHHHH--HHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 4677777777553444 6777999999999864311 01122 236777889999999988763 112233566
Q ss_pred CCCCCCcEEEccCccCCCcchHHhhhccC---CCEEEcccCCCCCCC---hhhhhhcC-CCCCEEEccCCcCCC----cc
Q 035693 154 SFLPNLQVLNLSNCLLSDPINHHLANLLS---LSVIRLRDNHAVSCQ---VPEFVANL-LNLTTLDLSQCDLHG----KF 222 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~---~~~~l~~l-~~L~~L~l~~~~~~~----~~ 222 (348)
..+++|++|++++|.+....+..+..+.+ |++|++++|+..... +...+..+ ++|++|++++|.+++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 77899999999999998666666666655 999999999543221 23345666 899999999999874 23
Q ss_pred cccccCCCCccEEEccCCCCCCCCCCC----CCCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCC
Q 035693 223 PEKVLQVPTLETLDLSYNSLLQGSLPH----FPKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPI 294 (348)
Q Consensus 223 ~~~l~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~ 294 (348)
+..+..+++|++|++++|.+.....+. +...++|+.|++++|.+.+. +...+..+++|++|++++|.+.+..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 445666789999999999876544333 33457999999999988643 2334566789999999999998622
Q ss_pred ccccc-----CCCCCCEEeCCCCccCCccCchhh---hhhcCCCeeecccCcccc
Q 035693 295 PTSMA-----NLTQLFHLDFSSNHFSDPIPTLRL---YMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 295 ~~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~g 341 (348)
...+. ..+.|+.|++++|.+++.....+. ...++|+++++++|.++.
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 22221 247999999999999753322222 222689999999999974
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=5.9e-17 Score=156.40 Aligned_cols=251 Identities=20% Similarity=0.286 Sum_probs=181.1
Q ss_pred EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCC
Q 035693 44 DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPN 122 (348)
Q Consensus 44 ~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~ 122 (348)
.|.. .+.+.|+++++ .+. .+|. .+ .++|+.|++++|.++. +|. ..++|++|++++|.++ .+|.
T Consensus 174 ~Cl~-~~~~~L~L~~~-~Lt-sLP~--~I--p~~L~~L~Ls~N~Lts--LP~~l~~nL~~L~Ls~N~Lt-------sLP~ 237 (754)
T PRK15370 174 DCLK-NNKTELRLKIL-GLT-TIPA--CI--PEQITTLILDNNELKS--LPENLQGNIKTLYANSNQLT-------SIPA 237 (754)
T ss_pred hhcc-cCceEEEeCCC-CcC-cCCc--cc--ccCCcEEEecCCCCCc--CChhhccCCCEEECCCCccc-------cCCh
Confidence 4543 56789999988 665 4554 33 3579999999999987 455 5579999999999864 2343
Q ss_pred hhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh
Q 035693 123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV 202 (348)
Q Consensus 123 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 202 (348)
. + .+.|+.|++++|.+...+.. + ..+|++|++++|.+.. +|..+. ++|+.|++++|.. +. ++..+
T Consensus 238 ~--l--~~~L~~L~Ls~N~L~~LP~~----l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~L-t~-LP~~l 302 (754)
T PRK15370 238 T--L--PDTIQEMELSINRITELPER----L--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSI-RT-LPAHL 302 (754)
T ss_pred h--h--hccccEEECcCCccCcCChh----H--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcc-cc-Ccccc
Confidence 2 2 24799999999998865432 2 2479999999999886 565443 5899999999844 32 33322
Q ss_pred hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCE
Q 035693 203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS 282 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~ 282 (348)
. +.|+.|++++|.+. .+|..+ .++|+.|++++|.+... +..+ .++|+.|++++|++. .+|..+. ++|+.
T Consensus 303 p--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 303 P--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred h--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 2 36888999999887 455543 36899999999986532 2222 368999999999988 5676553 68999
Q ss_pred EeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh---hhcCCCeeecccCccc
Q 035693 283 VDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY---MSRNLNYLNLSSNDLT 340 (348)
Q Consensus 283 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~l~ 340 (348)
|++++|.+.. +|..+. ..|+.|++++|++.. +|..+.. ..+.+..|++.+|+++
T Consensus 372 LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 9999999987 565443 368999999999874 6654322 2367889999999875
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=6.1e-20 Score=157.72 Aligned_cols=260 Identities=27% Similarity=0.346 Sum_probs=219.6
Q ss_pred EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693 51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 127 (348)
+..+.++.| .+....+ .+.++..|.++++.+|.+... |. .+..++.+++++|++. .+|.. +.
T Consensus 47 l~~lils~N-~l~~l~~---dl~nL~~l~vl~~~~n~l~~l--p~aig~l~~l~~l~vs~n~ls-------~lp~~--i~ 111 (565)
T KOG0472|consen 47 LQKLILSHN-DLEVLRE---DLKNLACLTVLNVHDNKLSQL--PAAIGELEALKSLNVSHNKLS-------ELPEQ--IG 111 (565)
T ss_pred hhhhhhccC-chhhccH---hhhcccceeEEEeccchhhhC--CHHHHHHHHHHHhhcccchHh-------hccHH--Hh
Confidence 678889998 6653433 788999999999999998874 44 7888999999999853 66666 78
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 207 (348)
....|+.+++++|.+.... ..++.+..|+.++-.+|.++. .|..+..+.++..+++.+|+... .+...-++..
T Consensus 112 s~~~l~~l~~s~n~~~el~----~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~ 184 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELP----DSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKA--LPENHIAMKR 184 (565)
T ss_pred hhhhhhhhhccccceeecC----chHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhh--CCHHHHHHHH
Confidence 8899999999999987665 467888899999999999987 78888999999999999985433 4444445889
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcccc-CCCCCCEEeec
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIG-NLENLASVDVS 286 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~-~~~~L~~L~L~ 286 (348)
|++++...|.+. .+|+.++.+.+|..|++..|.+ ...|.|.++..|+++.++.|++. .+|.... .++++..|+++
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 999999999887 8999999999999999999976 45679999999999999999998 6777655 88999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
.|++.+ +|..+..+.+|.+||+++|.|++ +|...... .|+.|-+.+|++.
T Consensus 261 dNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlr 310 (565)
T KOG0472|consen 261 DNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLR 310 (565)
T ss_pred cccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchH
Confidence 999998 88888889999999999999987 77665543 7889999999873
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=5.5e-16 Score=149.04 Aligned_cols=236 Identities=22% Similarity=0.225 Sum_probs=166.1
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcce-----eecCCC-
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW-----RLEIPN- 122 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~- 122 (348)
.+++.|++++| .+. .+|. .+++|++|++++|.++. +|...++|++|++++|.+...... .+.+..
T Consensus 222 ~~L~~L~L~~N-~Lt-~LP~-----lp~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDN-NLT-SLPA-----LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCC-cCC-CCCC-----CCCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcCC
Confidence 46788888888 665 3553 25788888888888886 555566777777777765421000 000000
Q ss_pred -hhh-hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhh
Q 035693 123 -FNF-FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPE 200 (348)
Q Consensus 123 -~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 200 (348)
... -...++|+.|++++|++...+. ....|+.|++++|.++. +|. ...+|+.|++++|++.. ++.
T Consensus 293 ~Lt~LP~~p~~L~~LdLS~N~L~~Lp~-------lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~--LP~ 359 (788)
T PRK15387 293 QLTSLPVLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS--LPT 359 (788)
T ss_pred ccccccccccccceeECCCCccccCCC-------CcccccccccccCcccc-ccc---cccccceEecCCCccCC--CCC
Confidence 000 1123689999999998876432 12468899999999886 453 22589999999995432 333
Q ss_pred hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCC
Q 035693 201 FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL 280 (348)
Q Consensus 201 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L 280 (348)
. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+.. ++.. .++|+.|++++|.+. .+|.. ..+|
T Consensus 360 l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~--LP~l--~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 360 L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS--LPVL--PSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred C---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC--CCCc--ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 2 347888999999987 46643 3579999999998753 3322 358999999999998 56653 3478
Q ss_pred CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchh
Q 035693 281 ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR 322 (348)
Q Consensus 281 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 322 (348)
+.|++++|+++. +|..+..+++|..|++++|++.+..+..+
T Consensus 425 ~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 425 LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 899999999987 88888999999999999999998666543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=4.1e-18 Score=160.20 Aligned_cols=266 Identities=25% Similarity=0.307 Sum_probs=176.5
Q ss_pred EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693 51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT 130 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (348)
++.+++..+ .+.+.++. ++.++++ .|++++|.+... ....+++|+.|....|.++. + --.-+
T Consensus 158 ik~~~l~~n-~l~~~~~~--~i~~l~~--~ldLr~N~~~~~-dls~~~~l~~l~c~rn~ls~-----l-------~~~g~ 219 (1081)
T KOG0618|consen 158 IKKLDLRLN-VLGGSFLI--DIYNLTH--QLDLRYNEMEVL-DLSNLANLEVLHCERNQLSE-----L-------EISGP 219 (1081)
T ss_pred chhhhhhhh-hcccchhc--chhhhhe--eeecccchhhhh-hhhhccchhhhhhhhcccce-----E-------EecCc
Confidence 566666666 55556655 5666666 678888877732 45577777777777776532 1 12345
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 210 (348)
.|+.|+...|.++.... -....+|++++++.+.++. +|..+..+.+|+.+....|+. ..++..+....+|+.
T Consensus 220 ~l~~L~a~~n~l~~~~~-----~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l--~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV-----HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL--VALPLRISRITSLVS 291 (1081)
T ss_pred chheeeeccCcceeecc-----ccccccceeeecchhhhhc-chHHHHhcccceEecccchhH--HhhHHHHhhhhhHHH
Confidence 77777777777764332 2234578888888888887 668888888888888888844 346667777778888
Q ss_pred EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEEcccCCCCCCCCc-cccCCCCCCEEeecCC
Q 035693 211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLNLKNTSFSGKLPD-SIGNLENLASVDVSSC 288 (348)
Q Consensus 211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ls~n~~~~~~~~-~l~~~~~L~~L~L~~n 288 (348)
|.+..|.+. .+|+...+.+.|++|++..|.+.....-.+.. ..+++.|+.+.+.+. ..|. .-...+.|+.|.+.+|
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcC
Confidence 888888876 66666777888888888888764332212222 223555666666554 2332 1123456777777777
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
.+++.....+.++++|++|+|++|++.. +|.........|++|+|++|.++ .||+.
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred cccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 7777666667777778888888877754 67666666677777778887776 66653
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=5e-18 Score=145.70 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=80.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCC-CCCCCCcceeecCCChh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSS-REPISGFSWRLEIPNFN 124 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~ 124 (348)
...++|+|..| .+. .+|. ..|+.+++|+.|||++|+|+.+ .|. +++.|.+|-+.+ |+++ ....+
T Consensus 67 ~~tveirLdqN-~I~-~iP~-~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~--------~l~k~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQN-QIS-SIPP-GAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT--------DLPKG 134 (498)
T ss_pred CcceEEEeccC-Ccc-cCCh-hhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh--------hhhhh
Confidence 46677777777 554 5554 4677788888888888877775 333 666666666666 4432 11224
Q ss_pred hhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC
Q 035693 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH 192 (348)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 192 (348)
.|.++..|+.|.+.-|++.-... ..+..+++|..|.+..|.+..+-...+..+..++.+++..|+
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~---~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQ---DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhH---HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 46666677777776666655443 456666677777777776655333355666666666666654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=1.9e-17 Score=142.18 Aligned_cols=248 Identities=23% Similarity=0.241 Sum_probs=172.8
Q ss_pred ccCEEeCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC-cCCCCcchhhhh
Q 035693 77 YLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-VDLSGRRTEWCK 151 (348)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~ 151 (348)
.-..|+|..|.|+. +|. .+++|++|+|++|.++ ..-| +.|++++.|..|.+.+ |+|++... .
T Consensus 68 ~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is------~I~p--~AF~GL~~l~~Lvlyg~NkI~~l~k---~ 134 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNIS------FIAP--DAFKGLASLLSLVLYGNNKITDLPK---G 134 (498)
T ss_pred cceEEEeccCCccc--CChhhccchhhhceecccccchh------hcCh--HhhhhhHhhhHHHhhcCCchhhhhh---h
Confidence 56778999999988 555 8999999999999873 2333 3488888887777755 88888776 6
Q ss_pred hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-----------
Q 035693 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG----------- 220 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----------- 220 (348)
.|.++..|+.|.+.-|.+.-+...++..++++..|.+.+|. +.......+..+..++.+.+..|.+..
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 78888999999998888888778889999999999999983 332233356667777777776665210
Q ss_pred -cccccccCCCCccEEEccCCCC-------------------------CC-CCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693 221 -KFPEKVLQVPTLETLDLSYNSL-------------------------LQ-GSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273 (348)
Q Consensus 221 -~~~~~l~~~~~L~~L~l~~~~l-------------------------~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 273 (348)
..|..++.....+...+.+.++ .. .....|..+++|++|++++|+++..-+.+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111222221111111111111 11 11123455788888999999888777778
Q ss_pred ccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339 (348)
Q Consensus 274 l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 339 (348)
|.....+++|.|..|++...-...+.++.+|+.|+|.+|+|+...|.. ++...+|.+|+|-.|++
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-ccccceeeeeehccCcc
Confidence 888888888888888888766667778888889999999988744444 44447788888877765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=2.5e-16 Score=120.73 Aligned_cols=181 Identities=25% Similarity=0.393 Sum_probs=132.1
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+.++.++..|.+++|.++.+++ .+..+.+|++|++.+|.+.. +|..++.+++|+.|+++-|+.. ..|..|+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vpp----nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~--~lprgfgs~ 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPP----NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN--ILPRGFGSF 101 (264)
T ss_pred ccchhhhhhhhcccCceeecCC----cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh--cCccccCCC
Confidence 4566777888888888877665 46677888888888888776 7778888888888888876432 467788888
Q ss_pred CCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693 206 LNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284 (348)
Q Consensus 206 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~ 284 (348)
|.|++|++..|.+. ..+|..|..++.|+.|.+++|.+ ...++.++.+.+|+.|.+.+|.+. .+|..++.++.|++|.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 88888888888775 36677777778888888888875 345667777888888888888877 6788888888888888
Q ss_pred ecCCccCCCCcccccCCC---CCCEEeCCCCccCC
Q 035693 285 VSSCNFTRPIPTSMANLT---QLFHLDFSSNHFSD 316 (348)
Q Consensus 285 L~~n~l~~~~~~~l~~~~---~L~~L~l~~n~l~~ 316 (348)
+.+|+++- +|..++++. +=.++.+..|+.-.
T Consensus 180 iqgnrl~v-lppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 180 IQGNRLTV-LPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred cccceeee-cChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 88888876 444444322 22344455555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=2e-16 Score=121.23 Aligned_cols=163 Identities=24% Similarity=0.348 Sum_probs=85.3
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
.+.+...|.+++|+++ .+|.. +..+.+|+.|++.+|++.+.+. ++..+++|+.|+++-|.+.. .|.
T Consensus 31 ~~s~ITrLtLSHNKl~-------~vppn--ia~l~nlevln~~nnqie~lp~----~issl~klr~lnvgmnrl~~-lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-------VVPPN--IAELKNLEVLNLSNNQIEELPT----SISSLPKLRILNVGMNRLNI-LPR 96 (264)
T ss_pred chhhhhhhhcccCcee-------ecCCc--HHHhhhhhhhhcccchhhhcCh----hhhhchhhhheecchhhhhc-Ccc
Confidence 4455555555555542 33333 4555555666666655554432 44555556666655555443 555
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
.|+.++.|+.|++..|......+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. ..+..++.+..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 55555566666655554444444544545555555555555554 45555555555666555555431 22233344555
Q ss_pred CcEEEcccCCCCCCCCcccc
Q 035693 256 LRNLNLKNTSFSGKLPDSIG 275 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~ 275 (348)
|++|.+.+|+++ .+|..++
T Consensus 175 lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHhcccceee-ecChhhh
Confidence 555556665555 4444333
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=7.3e-15 Score=124.63 Aligned_cols=233 Identities=22% Similarity=0.280 Sum_probs=159.4
Q ss_pred CCEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCC---CCCC----------CCCCCcEEecCCCCCC
Q 035693 49 GHVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGF---PMPS----------SLPRLVTLDLSSREPI 111 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~----------~~~~L~~L~l~~~~~~ 111 (348)
..+++|+||+| .+.. .+-. .+++.+.|+..+++.- +++. .+|+ .+|+|++|+||+|.|.
T Consensus 30 ~s~~~l~lsgn-t~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGN-TFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred CceEEEeccCC-chhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 56899999999 6532 2222 5667788888888753 2221 1332 7889999999999876
Q ss_pred CCcceeecCCCh-hhhcCCCCCcEEEccCcCCCCcchh----------hhhhhCCCCCCcEEEccCccCCCc----chHH
Q 035693 112 SGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTE----------WCKAMSFLPNLQVLNLSNCLLSDP----INHH 176 (348)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 176 (348)
.. .++.+ ..+..+..|++|.|.+|.+...... ......+-++|+++..++|.+... +...
T Consensus 106 ~~-----g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 106 PK-----GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred cc-----chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 32 22222 5578899999999999988754322 122345567899999998887643 3456
Q ss_pred hhhccCCCEEEcccCCCCCCC---hhhhhhcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCCC
Q 035693 177 LANLLSLSVIRLRDNHAVSCQ---VPEFVANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLPH 249 (348)
Q Consensus 177 ~~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 249 (348)
+...+.|+.+.+..|.+.... ....+..+++|++|++.+|.++. .+...+..++.|+.|++++|.+...+...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 677788999999888654332 34567788899999999998864 34456677788889999888776666554
Q ss_pred CCC-----CCCCcEEEcccCCCCCCC----CccccCCCCCCEEeecCCcc
Q 035693 250 FPK-----NSSLRNLNLKNTSFSGKL----PDSIGNLENLASVDVSSCNF 290 (348)
Q Consensus 250 ~~~-----~~~L~~L~ls~n~~~~~~----~~~l~~~~~L~~L~L~~n~l 290 (348)
+.. .++|+.|.+.+|.++..- ...+...+.|+.|+|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 432 677888888888776321 11223456777777888777
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=1.4e-13 Score=116.99 Aligned_cols=241 Identities=22% Similarity=0.235 Sum_probs=125.6
Q ss_pred ccccccccCEEeCCCCCCCCCCCCC------CCCCCcEEecCCCCCCCCcceeecCCCh-----hhhcCCCCCcEEEccC
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPMPS------SLPRLVTLDLSSREPISGFSWRLEIPNF-----NFFQNLTELRELYLDN 139 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~ 139 (348)
.+..+..++.|++++|.|....... .-++|++.++++-- ++ .....+|.. +.+..+++|++++||+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tG--R~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TG--RLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cC--CcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4556788888888888776541111 55677777777542 11 011122221 4566777888888888
Q ss_pred cCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcchHH-------------hhhccCCCEEEcccCCCCCC---Chhhhh
Q 035693 140 VDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPINHH-------------LANLLSLSVIRLRDNHAVSC---QVPEFV 202 (348)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~---~~~~~l 202 (348)
|-+....+. +-..+..+..|++|.+.+|.+...-... ...-++|+++..++|+.... .+...+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 877654332 2234456777888888887765422111 12235666666666643322 133345
Q ss_pred hcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCCCCccc
Q 035693 203 ANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGKLPDSI 274 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~~~~~l 274 (348)
...+.|+++.+..|.+.. .+...+..++.|+.|++.+|.++..... .++.++.|+.|++++|.+......++
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 555666666666665542 1223455566666666666655433222 23335555555555555543221111
Q ss_pred -----cCCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCcc
Q 035693 275 -----GNLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 275 -----~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l 314 (348)
...+.|+.+.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1234555555555555531 111222234555555555555
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.7e-13 Score=115.55 Aligned_cols=214 Identities=22% Similarity=0.190 Sum_probs=148.3
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
++++|+++.+.++... ..+.....+.|++++.|+|+.|=+....+ +......+++|+.|+++.|.+..-...
T Consensus 119 n~kkL~~IsLdn~~V~-------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-------DAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hHHhhhheeecCcccc-------ccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccc
Confidence 7889999999988642 11111347889999999999998776543 334556789999999999987542111
Q ss_pred -HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC-CCCCCCC
Q 035693 176 -HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS-LPHFPKN 253 (348)
Q Consensus 176 -~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~ 253 (348)
.-..++.|+.|.++.|......+...+..+|+|+.|++..|...........-+..|++|++++|++.+.. ......+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 11245788999999996554455566678899999999988522122223344668999999999865443 3455568
Q ss_pred CCCcEEEcccCCCCCC-CCcc-----ccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCCc
Q 035693 254 SSLRNLNLKNTSFSGK-LPDS-----IGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~~-~~~~-----l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
+.|+.|+++.+.+.+. .|+. ...+++|+.|++..|++.+. ....+..+++|+.|.+..|.+..+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8899999999988742 2322 24568899999999999651 112344567888888888888753
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.7e-13 Score=114.94 Aligned_cols=209 Identities=25% Similarity=0.274 Sum_probs=142.9
Q ss_pred ccccccCEEeCCCCCCCCCC---CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693 73 FSLQYLQSLNLGFTLFYGFP---MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW 149 (348)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 149 (348)
+++.+|+.+.|+++.+...+ ....|++++.|+++.|-|..+. .+. .....+|+|+.|+++.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----PVL--KIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----HHH--HHHHhcccchhcccccccccCCcccc
Confidence 46788888888888776653 2237999999999988765421 222 33678899999999988875432211
Q ss_pred hhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc--ccc
Q 035693 150 CKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP--EKV 226 (348)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l 226 (348)
.-..+++|+.|.++.|.++-. +...+..+|+|+.|.+..|.... .......-+..|++|++++|.+.. .+ ...
T Consensus 192 --~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~ 267 (505)
T KOG3207|consen 192 --TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLID-FDQGYKV 267 (505)
T ss_pred --chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccc-ccccccc
Confidence 122567899999999988743 44556678999999998884211 111222345568889999988763 22 345
Q ss_pred cCCCCccEEEccCCCCCCCCCCCC------CCCCCCcEEEcccCCCCCCCCc--cccCCCCCCEEeecCCccCC
Q 035693 227 LQVPTLETLDLSYNSLLQGSLPHF------PKNSSLRNLNLKNTSFSGKLPD--SIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 227 ~~~~~L~~L~l~~~~l~~~~~~~~------~~~~~L~~L~ls~n~~~~~~~~--~l~~~~~L~~L~L~~n~l~~ 292 (348)
+.++.|..|+++.+++.....+.. ..+++|++|+++.|++. .++. .+..+++|++|.+..|.+..
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 678889999999888766555544 33788999999999885 3332 34556778888877777764
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=5.6e-11 Score=114.44 Aligned_cols=145 Identities=27% Similarity=0.375 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCc----cccceEeCCC-----CCEEEEeCCCCccccccccCCcccc
Q 035693 3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCC----DWNGVDCDEA-----GHVIGLDLSAEPILIGSLENASGLF 73 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~c~~~-----~~l~~L~ls~~~~~~~~~~~~~~l~ 73 (348)
..|+.+|..+|.++. ++. ..+|. ++.|+ .|.|+.|... ..++.|+|+++ .+.+.+|. .+.
T Consensus 371 ~~~~~aL~~~k~~~~-~~~------~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-~L~g~ip~--~i~ 439 (623)
T PLN03150 371 LEEVSALQTLKSSLG-LPL------RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-GLRGFIPN--DIS 439 (623)
T ss_pred chHHHHHHHHHHhcC-Ccc------cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-CccccCCH--HHh
Confidence 468899999999974 222 13785 33332 6999999632 24889999999 88888886 788
Q ss_pred cccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693 74 SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM 153 (348)
Q Consensus 74 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 153 (348)
++++|+.|+|++|.+.+. +| .. +..+++|+.|+|++|++....+ ..+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~-iP---------------------------~~--~~~l~~L~~LdLs~N~lsg~iP---~~l 486 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGN-IP---------------------------PS--LGSITSLEVLDLSYNSFNGSIP---ESL 486 (623)
T ss_pred CCCCCCEEECCCCcccCc-CC---------------------------hH--HhCCCCCCEEECCCCCCCCCCc---hHH
Confidence 888888888888877654 33 22 4555556666666665554443 345
Q ss_pred CCCCCCcEEEccCccCCCcchHHhhhc-cCCCEEEcccC
Q 035693 154 SFLPNLQVLNLSNCLLSDPINHHLANL-LSLSVIRLRDN 191 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 191 (348)
..+++|++|++++|.+++.+|..+... .++..+++.+|
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 566666666666666666666555432 34455555555
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.1e-10 Score=92.84 Aligned_cols=126 Identities=25% Similarity=0.368 Sum_probs=47.6
Q ss_pred cCCCCCEEEccCCcCCCccccccc-CCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccc-cCCCCCC
Q 035693 204 NLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSI-GNLENLA 281 (348)
Q Consensus 204 ~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-~~~~~L~ 281 (348)
+...+++|++.++.+. .+ +.++ .+.+|+.|++++|.+. .++.+..++.|++|++++|.++ .+.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~--~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT--KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc--cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4446778888888776 22 3344 4677888888888763 4455666788888888888887 344334 3578888
Q ss_pred EEeecCCccCC-CCcccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeecc
Q 035693 282 SVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLS 335 (348)
Q Consensus 282 ~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~ 335 (348)
+|++++|++.+ ..-..+..+++|+.|++.+|++... +. .++..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 88888888876 1224566788888999998888753 32 245556888888743
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=9.9e-11 Score=93.21 Aligned_cols=108 Identities=31% Similarity=0.276 Sum_probs=22.9
Q ss_pred cccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhh
Q 035693 72 LFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWC 150 (348)
Q Consensus 72 l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 150 (348)
+.+..+++.|+|++|.|+...-.. .+.+|+.|++++|.+.. + +.+..++.|++|++++|+++.....
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-------l---~~l~~L~~L~~L~L~~N~I~~i~~~-- 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-------L---EGLPGLPRLKTLDLSNNRISSISEG-- 82 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS---S-CHH--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-------c---cCccChhhhhhcccCCCCCCccccc--
Confidence 334445666666666665542222 34555555555554421 1 1144455555555555555543221
Q ss_pred hhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCC
Q 035693 151 KAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNH 192 (348)
Q Consensus 151 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 192 (348)
....+++|++|++++|.+... ....+..+++|+.|++.+|+
T Consensus 83 -l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 -LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred -hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 012345555555555554432 11334444555555555553
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=2.7e-11 Score=101.39 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=73.8
Q ss_pred cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEE
Q 035693 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLN 260 (348)
Q Consensus 181 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 260 (348)
..|+++++++|. ++ .+.+...-.|.++.|++++|.+. ++ ..+..+++|+.|++++|.+. .....-..+.+.++|.
T Consensus 284 q~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 456666777663 22 24445555666777777777665 22 22556666777777766542 1111222245666677
Q ss_pred cccCCCCCCCCccccCCCCCCEEeecCCccCC-CCcccccCCCCCCEEeCCCCccCC
Q 035693 261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+++|.+.. + ..++.+-+|..|++++|+|.. .-...++++|+|+.+.|.+|++.+
T Consensus 359 La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77766541 1 234555667777777777764 223445667777777777777765
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=5.7e-10 Score=102.45 Aligned_cols=180 Identities=33% Similarity=0.413 Sum_probs=103.5
Q ss_pred ccccccccCEEeCCCCCCCCCCCCC-CC-CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchh
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPMPS-SL-PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE 148 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 148 (348)
.+..++.++.|++.++.+++..-.. .. ++|+.|++++|.+. .++.. +..+++|+.|++++|++.+...
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-------~l~~~--~~~l~~L~~L~l~~N~l~~l~~- 180 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------SLPSP--LRNLPNLKNLDLSFNDLSDLPK- 180 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-------hhhhh--hhccccccccccCCchhhhhhh-
Confidence 3445566777777777666642112 33 26777777777643 22112 5666777777777777665443
Q ss_pred hhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccC
Q 035693 149 WCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ 228 (348)
Q Consensus 149 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 228 (348)
.....+.|+.|++++|.+.. +|........|++|.+++|+.. ..+..+..+..+..+.+.++.+. ..+..+..
T Consensus 181 ---~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 181 ---LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred ---hhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceee-eccchhcc
Confidence 22256667777777777665 4444444455667777666322 23444555566666666666554 33455566
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCC
Q 035693 229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGK 269 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~ 269 (348)
++.++.|++++|.+..... +....+++.|+++++.+...
T Consensus 254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 6667777777766533322 55566677777777666543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=7.1e-11 Score=98.89 Aligned_cols=221 Identities=22% Similarity=0.238 Sum_probs=135.9
Q ss_pred CEEEEeCCCCc-------cccccccCCcccccccccCEEeCCCCCCCCCC-CCCCCCCCcEEecCCCCCCCCcceeecCC
Q 035693 50 HVIGLDLSAEP-------ILIGSLENASGLFSLQYLQSLNLGFTLFYGFP-MPSSLPRLVTLDLSSREPISGFSWRLEIP 121 (348)
Q Consensus 50 ~l~~L~ls~~~-------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 121 (348)
+++.|.+++.. .....+|. .+.-+.+|..+.++++.-..+. +...-|.|+++.+.+..+.. .+
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f--~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-------~~ 253 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSF--NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-------VP 253 (490)
T ss_pred heeEEEecCCCCCCcccccccccccc--chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-------cc
Confidence 46777777641 11123333 4556677777777766443321 22245667777666543211 01
Q ss_pred ChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhh
Q 035693 122 NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEF 201 (348)
Q Consensus 122 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 201 (348)
. + .|.-...+.....-+.........+.....|+++++++|.|+. +..++.-.|+++.|+++.|.+.. ...
T Consensus 254 ~---l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~---v~n 324 (490)
T KOG1259|consen 254 S---L--LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT---VQN 324 (490)
T ss_pred c---c--cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceee---ehh
Confidence 0 1 1111111221111111111111223334678899999998886 67788888999999999985433 233
Q ss_pred hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCC--ccccCCCC
Q 035693 202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLP--DSIGNLEN 279 (348)
Q Consensus 202 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~--~~l~~~~~ 279 (348)
+..+++|+.|++++|.++ ....+=..+-++++|.+++|.+ +....+..+-+|..||+++|++. .+. ..++++|.
T Consensus 325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPC 400 (490)
T ss_pred hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchh-hHHHhcccccccH
Confidence 778889999999999876 3333334567889999998865 44455555778999999999886 332 35788999
Q ss_pred CCEEeecCCccCC
Q 035693 280 LASVDVSSCNFTR 292 (348)
Q Consensus 280 L~~L~L~~n~l~~ 292 (348)
|+++.|.+|++..
T Consensus 401 LE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 401 LETLRLTGNPLAG 413 (490)
T ss_pred HHHHhhcCCCccc
Confidence 9999999999986
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=1.3e-09 Score=100.04 Aligned_cols=177 Identities=34% Similarity=0.509 Sum_probs=82.8
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCC-CCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLP-NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
..+.++.+.+.++.+++..+ ...... +|++|++++|.+.. ++..+..+++|+.|+++.|+... ++......+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~----~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~ 186 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP----LIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLS 186 (394)
T ss_pred cccceeEEecCCcccccCcc----ccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh--hhhhhhhhh
Confidence 33455555555555554432 122232 55555555555544 33444555555555555553221 222222444
Q ss_pred CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~ 286 (348)
.|+.|++++|.+. .+|........|+++.+++|+. ......+.....+..+.+.+|++. ..+..++.+++++.|+++
T Consensus 187 ~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 187 NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 5555555555554 3444333334455555555531 122233333444444545555444 223444445555555555
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+|.+....+ ++...+++.|++++|.+..
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccccc--ccccCccCEEeccCccccc
Confidence 555555222 4445555555555555443
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=105.07 Aligned_cols=113 Identities=27% Similarity=0.364 Sum_probs=77.2
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
++.|++++|.+.......+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777766555555566677777777777777777777777777777777777777777777777777777777777
Q ss_pred CccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip 344 (348)
|++.+.+|..+.....++..+++.+|.....+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 777777776654433455667777775333333
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.8e-11 Score=110.53 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=154.4
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
..+..-...+++.|++...+. .+..+..|+.+.+..|.+.. +|..+..+..|++|+|+.|+.. .++..+..+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~----~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~l- 143 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPE----EACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS--HLPDGLCDL- 143 (722)
T ss_pred ccccchhhhhccccccccCch----HHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh--cCChhhhcC-
Confidence 445555677888888876654 44555678888888888876 7888999999999999998543 355566565
Q ss_pred CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~ 286 (348)
-|+.|.+++|+++ .+|+.++..++|..|+.+.|.+ ...+..++.+.+|+.|++..|.+. .+|..+..+ .|..|+++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence 4899999999988 7888888888999999999975 344566777889999999999988 677777754 58899999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh--hhcCCCeeecccCc
Q 035693 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY--MSRNLNYLNLSSND 338 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~ 338 (348)
+|++.. +|-.+.++..|++|-|.+|++.. -|..+.. ...-.++|+..-|+
T Consensus 220 cNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 999998 88888999999999999999987 4443322 12456788887775
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.2e-11 Score=109.86 Aligned_cols=197 Identities=22% Similarity=0.273 Sum_probs=151.0
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
.+.--...+++.|.+. .+|.. +..+..|+.+.+..|.+-.++ ..+.++..|++++++.|.++. +|.
T Consensus 73 ~ltdt~~aDlsrNR~~-------elp~~--~~~f~~Le~liLy~n~~r~ip----~~i~~L~~lt~l~ls~NqlS~-lp~ 138 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-------ELPEE--ACAFVSLESLILYHNCIRTIP----EAICNLEALTFLDLSSNQLSH-LPD 138 (722)
T ss_pred cccchhhhhccccccc-------cCchH--HHHHHHHHHHHHHhccceecc----hhhhhhhHHHHhhhccchhhc-CCh
Confidence 4556677888888764 55655 566677888888888776554 467889999999999999887 666
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
.+..++ |+.|.+++|+.. .++..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. ..++.+.. -.
T Consensus 139 ~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp 212 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP 212 (722)
T ss_pred hhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence 666654 889999998543 36777787888999999999987 77888899999999999999863 33444443 35
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccc--cCCCCCCEEeCCCCc
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSM--ANLTQLFHLDFSSNH 313 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l--~~~~~L~~L~l~~n~ 313 (348)
|.+||++.|++. .+|..|..+..|++|-|.+|.+........ +...-.++|+...|+
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 899999999998 889999999999999999999987333221 222345677777774
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=1.7e-10 Score=100.58 Aligned_cols=280 Identities=18% Similarity=0.170 Sum_probs=142.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCC-CCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTL-FYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFN 124 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 124 (348)
+.+++|.+.|+... +.-+.-....++++++.|++.++. +++..... .|++|++|++..|...+. ..+. .
T Consensus 138 g~lk~LSlrG~r~v-~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~----~~Lk--~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV-GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD----VSLK--Y 210 (483)
T ss_pred cccccccccccccC-CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH----HHHH--H
Confidence 57888888888333 333322234688888888887763 33321111 788888888888752110 0111 1
Q ss_pred hhcCCCCCcEEEccCcC-CCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhccCCCEEEcccCCCCCCCh-hh
Q 035693 125 FFQNLTELRELYLDNVD-LSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLLSLSVIRLRDNHAVSCQV-PE 200 (348)
Q Consensus 125 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 200 (348)
....|++|++++++.|. +.+...+ ....++..++.+-..+|.=.+ .+...-..+..+.++++..|..+++.. ..
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 24578888888888875 3332111 233445555555555542111 011122333445555655554444322 22
Q ss_pred hhhcCCCCCEEEccCCcCCC-ccccc-ccCCCCccEEEccCCC-CCCCCCCCCCC-CCCCcEEEcccCCCCC--CCCccc
Q 035693 201 FVANLLNLTTLDLSQCDLHG-KFPEK-VLQVPTLETLDLSYNS-LLQGSLPHFPK-NSSLRNLNLKNTSFSG--KLPDSI 274 (348)
Q Consensus 201 ~l~~l~~L~~L~l~~~~~~~-~~~~~-l~~~~~L~~L~l~~~~-l~~~~~~~~~~-~~~L~~L~ls~n~~~~--~~~~~l 274 (348)
.-..+..|+++..+++...+ ..-.. .....+|+.+-+..|+ ++...+..++. ++.|+.+++.++.... .+...-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 22344566666666554321 11111 2335667777766664 33344444444 5666666666664321 111112
Q ss_pred cCCCCCCEEeecCCccCCCC-----cccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 275 GNLENLASVDVSSCNFTRPI-----PTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 275 ~~~~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
.+++.|+.+++++|....+. ...-..+..+..+.+++++.+.+..-.....+++|+.+++-++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34566666666666443211 1122334566666666666543222233444466666666555
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=5.1e-09 Score=103.49 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=122.2
Q ss_pred cccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693 72 LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK 151 (348)
Q Consensus 72 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 151 (348)
..+....+.+.+.++.+........+++|+.|-+..|.. ........+|..+|.|++|++++|.-... ++.
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~---LP~ 589 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSK---LPS 589 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCCCCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCc---CCh
Confidence 445567777777777776654444777888888888741 01122224478889999999987653332 336
Q ss_pred hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCC--CcccccccCC
Q 035693 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLH--GKFPEKVLQV 229 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~~ 229 (348)
.++.+-+||+|+++++.+.. +|..+.++.+|.+|++..+.... ..+.....+.+|++|.+...... ......+..+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred HHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccc-cccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 78888889999999888885 88888888899999988764332 23455556888888888765422 1222233445
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCCCc----EEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 230 PTLETLDLSYNSLLQGSLPHFPKNSSLR----NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 230 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
.+|+.+.+..... .....+.....|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+
T Consensus 668 e~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 668 EHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 5555555543321 1111122211221 2222222222 223344555666666666666654
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.74 E-value=6e-09 Score=86.30 Aligned_cols=234 Identities=20% Similarity=0.190 Sum_probs=146.4
Q ss_pred CCEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCC---CCCC----------CCCCCcEEecCCCCCC
Q 035693 49 GHVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGF---PMPS----------SLPRLVTLDLSSREPI 111 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~----------~~~~L~~L~l~~~~~~ 111 (348)
..+++++|||| .+.. .+-. .+++-.+|+..+++.- +++. .+++ .||+|+.+++|+|.|.
T Consensus 30 d~~~evdLSGN-tigtEA~e~l~~--~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 30 DELVEVDLSGN-TIGTEAMEELCN--VIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred cceeEEeccCC-cccHHHHHHHHH--HHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 56899999999 5432 1221 4566677888887753 2221 1121 8999999999999875
Q ss_pred CCcceeecCCCh--hhhcCCCCCcEEEccCcCCCCcchh----------hhhhhCCCCCCcEEEccCccCCCcc----hH
Q 035693 112 SGFSWRLEIPNF--NFFQNLTELRELYLDNVDLSGRRTE----------WCKAMSFLPNLQVLNLSNCLLSDPI----NH 175 (348)
Q Consensus 112 ~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~~~~----~~ 175 (348)
. ..|.. ++++.-..|++|.+++|.+...... ...-..+-|.|+++.+..|.+..-. ..
T Consensus 106 ~------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 106 S------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred c------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 3 22222 5678888999999999987643221 1122345678999999988775421 12
Q ss_pred HhhhccCCCEEEcccCCCCCCCh----hhhhhcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQV----PEFVANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSL 247 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~ 247 (348)
.+.....|+++.+..|.+-...+ ...+..+.+|+.|++.+|.++. .+...+..++.|++|.+.+|-++..+.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 23334688888888884433211 1233456788999999988763 233455667778889888887665554
Q ss_pred CC----CCC--CCCCcEEEcccCCCCCCC------Cccc-cCCCCCCEEeecCCccCC
Q 035693 248 PH----FPK--NSSLRNLNLKNTSFSGKL------PDSI-GNLENLASVDVSSCNFTR 292 (348)
Q Consensus 248 ~~----~~~--~~~L~~L~ls~n~~~~~~------~~~l-~~~~~L~~L~L~~n~l~~ 292 (348)
.. |.. .++|..|...+|.+.+.+ +... ..++-|..|.+.+|++..
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 33 222 677888888777654321 1111 245566666677777764
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.7e-10 Score=93.91 Aligned_cols=179 Identities=22% Similarity=0.256 Sum_probs=90.6
Q ss_pred CCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCc-CCC-cccccccCCCCccE
Q 035693 158 NLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD-LHG-KFPEKVLQVPTLET 234 (348)
Q Consensus 158 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~ 234 (348)
.|++|+++...++.. ....++.|.+|+.|.+.++ ...+.+...+.....|+.++++++. ++. ...-.+..++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666666655543 2334566666666666666 3444555556666666666666653 221 11223455666666
Q ss_pred EEccCCCCCCCCCCCCCC--CCCCcEEEcccCCCC---CCCCccccCCCCCCEEeecCCccC-CCCcccccCCCCCCEEe
Q 035693 235 LDLSYNSLLQGSLPHFPK--NSSLRNLNLKNTSFS---GKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQLFHLD 308 (348)
Q Consensus 235 L~l~~~~l~~~~~~~~~~--~~~L~~L~ls~n~~~---~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~ 308 (348)
|+++.|.+.......... -++|+.|+++|+.-. ..+..-...+++|.+|+|+.|-.. ......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666544333322222 345666666665321 011111234566666666665332 23334455566666666
Q ss_pred CCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 309 FSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 309 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
++.|......-...+...|+|.+||+-++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 66665332111111222256666665543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.5e-09 Score=100.06 Aligned_cols=223 Identities=23% Similarity=0.203 Sum_probs=112.1
Q ss_pred ccccccccCEEeCCCCCCCCCCC-CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPM-PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW 149 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 149 (348)
.+..+++|+.|++..|.+....- ...+++|++|++++|.++.. ..+..++.|+.|++++|.+....
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i----------~~l~~l~~L~~L~l~~N~i~~~~--- 156 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL----------EGLSTLTLLKELNLSGNLISDIS--- 156 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc----------cchhhccchhhheeccCcchhcc---
Confidence 35566666777777666666533 34666777777776655321 11455555666677666665433
Q ss_pred hhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccC
Q 035693 150 CKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQ 228 (348)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 228 (348)
.+..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+....... .+..+..+.+..|.+... +.+..
T Consensus 157 --~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~--~~l~~ 228 (414)
T KOG0531|consen 157 --GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKL--EGLNE 228 (414)
T ss_pred --CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---HHHHHHHhhcccccceec--cCccc
Confidence 24446666666666666654322 1 455566666666666333222111 122222234555544311 11222
Q ss_pred CCC--ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC---CCcc-cccCCC
Q 035693 229 VPT--LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR---PIPT-SMANLT 302 (348)
Q Consensus 229 ~~~--L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~---~~~~-~l~~~~ 302 (348)
... |+.+++.++++.... ..+..+..+..|++..+++... ..+.....+..+....+.+.. .... .....+
T Consensus 229 ~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred chhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 222 666666666543211 3333345566666666655421 112233444445555555442 1111 134455
Q ss_pred CCCEEeCCCCccCCc
Q 035693 303 QLFHLDFSSNHFSDP 317 (348)
Q Consensus 303 ~L~~L~l~~n~l~~~ 317 (348)
.+..+.+.+|++...
T Consensus 306 ~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccCccccc
Confidence 666666666666543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1e-08 Score=67.19 Aligned_cols=59 Identities=39% Similarity=0.575 Sum_probs=26.6
Q ss_pred CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693 255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH 313 (348)
Q Consensus 255 ~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 313 (348)
+|++|++++|++....+..+..+++|++|++++|.+....+.++..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444442222344444444444444444444333444444444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.5e-10 Score=93.97 Aligned_cols=136 Identities=25% Similarity=0.313 Sum_probs=58.4
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCc-chHHhhhccCCCEEEcccCCCCCCChhhhhh
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEFVA 203 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 203 (348)
+..|.+|+.|.+.++++.+... ..+....+|+.|+++.++ ++.. .--.+.+|..|..|+++.|...+..+...+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 4555555555555555544322 344455555555555542 2221 1123344555555555555333322222222
Q ss_pred cC-CCCCEEEccCCcCC---CcccccccCCCCccEEEccCCCC-CCCCCCCCCCCCCCcEEEcccC
Q 035693 204 NL-LNLTTLDLSQCDLH---GKFPEKVLQVPTLETLDLSYNSL-LQGSLPHFPKNSSLRNLNLKNT 264 (348)
Q Consensus 204 ~l-~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~L~ls~n 264 (348)
.. +.|..|+++|+.-. +.+......+++|.+|++++|.. ....+..|.+++.|++|.++.|
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 22 23445555544321 11111223445555555555432 1122233334445555555554
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.5e-08 Score=66.38 Aligned_cols=61 Identities=41% Similarity=0.572 Sum_probs=53.8
Q ss_pred CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693 278 ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339 (348)
Q Consensus 278 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 339 (348)
++|++|++++|++....+..+..+++|++|++++|++.. ++...+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999766788999999999999999976 6666666779999999999975
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=2.1e-09 Score=93.99 Aligned_cols=275 Identities=20% Similarity=0.203 Sum_probs=171.9
Q ss_pred CCEEEEeCCCCccccccccCCccc-ccccccCEEeCCCC-CCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCCh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGL-FSLQYLQSLNLGFT-LFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNF 123 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 123 (348)
+++++|++.+|..+++..-. .+ ..+++|+.|++..+ .+++..+. +.|++|+++++++|.-.. ...+...
T Consensus 164 pnIehL~l~gc~~iTd~s~~--sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~----~~gv~~~ 237 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLL--SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS----GNGVQAL 237 (483)
T ss_pred CchhhhhhhcceeccHHHHH--HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh----cCcchHH
Confidence 67889999999555443322 33 57899999999884 66665222 289999999999997322 1122233
Q ss_pred hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCc-chHHhhhccCCCEEEcccCCCCCCChhhh
Q 035693 124 NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDP-INHHLANLLSLSVIRLRDNHAVSCQVPEF 201 (348)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 201 (348)
+.++..++.+.+.+|.-.+.. .+...-..+..+..+++..|. +++. +...-..+.+|+.|..+++...+......
T Consensus 238 --~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 238 --QRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred --hccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 677888888888776433221 222233455667777766664 3332 22333456788999998886655544444
Q ss_pred h-hcCCCCCEEEccCCcC-CCcccccc-cCCCCccEEEccCCCCCCCC-CCCCCC-CCCCcEEEcccCCC-CCC----CC
Q 035693 202 V-ANLLNLTTLDLSQCDL-HGKFPEKV-LQVPTLETLDLSYNSLLQGS-LPHFPK-NSSLRNLNLKNTSF-SGK----LP 271 (348)
Q Consensus 202 l-~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~l~~~~-~~~~~~-~~~L~~L~ls~n~~-~~~----~~ 271 (348)
+ .+.++|+++.++.|+. +..-...+ .+++.|+.+++.++...... +..+.. ++.|+.+.++.|.. +++ +.
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 4 4667899999988863 22211222 34678889999888654333 333333 78899999998753 322 11
Q ss_pred ccccCCCCCCEEeecCCccCC-CCcccccCCCCCCEEeCCCCc-cCCccCchhhhhhcCCCee
Q 035693 272 DSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLFHLDFSSNH-FSDPIPTLRLYMSRNLNYL 332 (348)
Q Consensus 272 ~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L 332 (348)
..-.....|+.+.+.+++... ..-+.+..+++|+.+++.+++ ++.+...-+...+|+++..
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 222455678899999987753 444566778899999998886 4333223333344555443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=2.9e-08 Score=91.56 Aligned_cols=246 Identities=28% Similarity=0.293 Sum_probs=137.7
Q ss_pred cccccCEEeCCCCCCCCC-CCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 74 SLQYLQSLNLGFTLFYGF-PMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 74 ~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
.+..++.++++.|.+... .....+.+|+.|++.+|.+.. +... +..+++|++|++++|.++....
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-------i~~~--l~~~~~L~~L~ls~N~I~~i~~----- 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-------IENL--LSSLVNLQVLDLSFNKITKLEG----- 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-------cccc--hhhhhcchheeccccccccccc-----
Confidence 456666666777766652 123467777777777776542 2221 4557777788888777765543
Q ss_pred hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL 232 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 232 (348)
+..+..|+.|++.+|.+... ..+..+..|+.+++++|++....... ...+..++.+++.+|.+.. .+.+.....+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l 210 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKL 210 (414)
T ss_pred hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHH
Confidence 55566677777777777642 23344677777777777433211101 4566677777777776652 2223333444
Q ss_pred cEEEccCCCCCCCCCCCCCCCC--CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCC
Q 035693 233 ETLDLSYNSLLQGSLPHFPKNS--SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFS 310 (348)
Q Consensus 233 ~~L~l~~~~l~~~~~~~~~~~~--~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 310 (348)
..+++..|.+... ..+.... .|+.+++++|.+. ..+..+..+..+..+++..+.+... ..+...+.+..+...
T Consensus 211 ~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 211 VLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLN 285 (414)
T ss_pred HHhhcccccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccC
Confidence 4445665554221 2222222 2677777777776 3334455566777777777777652 123344556666666
Q ss_pred CCccCCc---cCchhhhhhcCCCeeecccCcccccC
Q 035693 311 SNHFSDP---IPTLRLYMSRNLNYLNLSSNDLTGGI 343 (348)
Q Consensus 311 ~n~l~~~---~~~~~~~~~~~L~~L~l~~n~l~g~i 343 (348)
.+++... .........+.+..+.+.+|.+....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 286 DNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhcchhhhhccccccccccccccccccCcccccc
Confidence 6665421 11111122256666666666655433
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.2e-08 Score=85.54 Aligned_cols=223 Identities=21% Similarity=0.167 Sum_probs=101.1
Q ss_pred ccCEEeCCCCCCCCCCCCC----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 77 YLQSLNLGFTLFYGFPMPS----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
-++.+.+.++.|...+... .+..++++++.+|.++++ -.+... +.++|.|+.|+++.|++...+...+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW----seI~~i--le~lP~l~~LNls~N~L~s~I~~lp-- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW----SEIGAI--LEQLPALTTLNLSCNSLSSDIKSLP-- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH----HHHHHH--HhcCccceEeeccCCcCCCccccCc--
Confidence 3444445454444432221 555666666666655431 122222 5566666666666666554332110
Q ss_pred hCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCChh-hhhh-cCCCCCEEEccCCcCC--Cccccccc
Q 035693 153 MSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQVP-EFVA-NLLNLTTLDLSQCDLH--GKFPEKVL 227 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~-~l~~L~~L~l~~~~~~--~~~~~~l~ 227 (348)
.-..+|++|.+.+..+.-. ....+..+|++++|+++.|..-..... .... --+.++.+....|... ........
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 1234566666655544321 223344555666666655521100000 0000 0112333333333221 01111122
Q ss_pred CCCCccEEEccCCCCCCCCC-CCCCCCCCCcEEEcccCCCCC-CCCccccCCCCCCEEeecCCccCCCCcc------ccc
Q 035693 228 QVPTLETLDLSYNSLLQGSL-PHFPKNSSLRNLNLKNTSFSG-KLPDSIGNLENLASVDVSSCNFTRPIPT------SMA 299 (348)
Q Consensus 228 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~ 299 (348)
.+|++..+.+..|++..... ..+..++.+--|+++.+++.+ +--+.+..++.|..|.++++++.+.+-. .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 34566666666665543322 233335555566666666642 1123455666777777777766642221 234
Q ss_pred CCCCCCEEe
Q 035693 300 NLTQLFHLD 308 (348)
Q Consensus 300 ~~~~L~~L~ 308 (348)
+++++++|+
T Consensus 277 RL~~v~vLN 285 (418)
T KOG2982|consen 277 RLTKVQVLN 285 (418)
T ss_pred eccceEEec
Confidence 456666655
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.3e-08 Score=85.40 Aligned_cols=212 Identities=20% Similarity=0.151 Sum_probs=134.6
Q ss_pred CCcEEecCCCCCCCCcceeecCCCh-hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693 99 RLVTLDLSSREPISGFSWRLEIPNF-NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL 177 (348)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 177 (348)
-++-|.+.++.+.+.. +. .+-..++.+++++|.+|.+++.. ++..-+.++|.|+.|+++.|++...+...-
T Consensus 46 a~ellvln~~~id~~g-------d~~~~~~~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEG-------DVMLFGSSVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred chhhheecCCCCCcch-------hHHHHHHHhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 3445666666553321 11 22457789999999999998765 344566889999999999998876433222
Q ss_pred hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCc--ccccccCC-CCccEEEccCCCCCCC-CCCCCCC-
Q 035693 178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGK--FPEKVLQV-PTLETLDLSYNSLLQG-SLPHFPK- 252 (348)
Q Consensus 178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~-~~L~~L~l~~~~l~~~-~~~~~~~- 252 (348)
....+|+.|.+.+...........+..+|.+++|.++.|..... -.+..... +.++++.+..|..... ..-.+..
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 35568999999887444445566778888999999998844311 11112222 3566777766643111 1111222
Q ss_pred CCCCcEEEcccCCCCCCC-CccccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCCcc
Q 035693 253 NSSLRNLNLKNTSFSGKL-PDSIGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 253 ~~~L~~L~ls~n~~~~~~-~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
++++..+-+..|.+...- .+.....+.+.-|+|+.+.+.+. -...+.+++.|.-|.++++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 567777777777665321 22344556677888888888762 2245677888999999998887643
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=1.4e-07 Score=78.42 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=140.3
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCc-------chhhhhhhCCCCCCcEEEccCcc
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGR-------RTEWCKAMSFLPNLQVLNLSNCL 168 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~ 168 (348)
-+..++++++|+|.|.++-.-.+ ...+.+-.+|++.+++.--.... ...+...+..||.|+.++++.|.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l----~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEEL----CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHH----HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 57778888888887653211000 03345556777777765322211 11233456678888888888888
Q ss_pred CCCcchH----HhhhccCCCEEEcccCCCCCCC---hhhh---------hhcCCCCCEEEccCCcCCC----cccccccC
Q 035693 169 LSDPINH----HLANLLSLSVIRLRDNHAVSCQ---VPEF---------VANLLNLTTLDLSQCDLHG----KFPEKVLQ 228 (348)
Q Consensus 169 ~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~---~~~~---------l~~l~~L~~L~l~~~~~~~----~~~~~l~~ 228 (348)
+....|. .+++...|.+|.+++|...... +..+ ...-|.|++++...|++.. .....+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 7765544 3455577888888887432211 1111 1234678888887777642 11112333
Q ss_pred CCCccEEEccCCCCCCCCCCCC-----CCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCCcccc-
Q 035693 229 VPTLETLDLSYNSLLQGSLPHF-----PKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPIPTSM- 298 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~l- 298 (348)
...|+++.+..|.+...+...+ ..+.+|+.|++.+|.++.. +...++.++.|++|.+..|-+.......+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 3577888888887655544332 2267888888888877632 22344556677888888887764222211
Q ss_pred -----cCCCCCCEEeCCCCccCCccCc------hhhhhhcCCCeeecccCccc
Q 035693 299 -----ANLTQLFHLDFSSNHFSDPIPT------LRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 299 -----~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~L~~L~l~~n~l~ 340 (348)
...|+|..|.+.+|.+.+.+.. .....+|-|..|.+.+|.++
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 2246778888877766543222 22333466667777777765
No 50
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.51 E-value=1.7e-07 Score=56.24 Aligned_cols=40 Identities=35% Similarity=0.781 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhhhCccCCCCCCcccCCCCCCC--CCCccccceEeC
Q 035693 3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQWSES--TDCCDWNGVDCD 46 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~c~ 46 (348)
..|+.+|++||.++..+|. ..+.+|..+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999976554 789999997 899999999995
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=3.3e-09 Score=98.72 Aligned_cols=127 Identities=28% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEE
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLN 260 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ 260 (348)
+|...+++.|... .+...+.-++.++.|++++|++... +.+..+++|++||++.|.+. ..+.+.. -..|+.|+
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc--cccccchhhhhheeee
Confidence 3444444444221 2344555566677777777776532 25566677777777777653 2333322 22377777
Q ss_pred cccCCCCCCCCccccCCCCCCEEeecCCccCCC-CcccccCCCCCCEEeCCCCccCC
Q 035693 261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+.+|.++ .+. .+.++.+|+.|++++|-+.+. --..+..+..|+.|.|.+|++..
T Consensus 239 lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7777665 222 345566777777777766641 01112334566777777777654
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=2.1e-07 Score=92.24 Aligned_cols=83 Identities=29% Similarity=0.266 Sum_probs=39.0
Q ss_pred cccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchh
Q 035693 72 LFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE 148 (348)
Q Consensus 72 l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 148 (348)
+..++.|+.||+++|.-.+. +|. .+-+|++|++++..+. .+|.. +.++..|.+|++..+......+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-------~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~- 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-------HLPSG--LGNLKKLIYLNLEVTGRLESIP- 635 (889)
T ss_pred HhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-------ccchH--HHHHHhhheecccccccccccc-
Confidence 44555555555555322111 444 4555555555555432 34444 5555555555555544322221
Q ss_pred hhhhhCCCCCCcEEEccCc
Q 035693 149 WCKAMSFLPNLQVLNLSNC 167 (348)
Q Consensus 149 ~~~~~~~~~~L~~L~l~~~ 167 (348)
.....+.+|++|.+...
T Consensus 636 --~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 636 --GILLELQSLRVLRLPRS 652 (889)
T ss_pred --chhhhcccccEEEeecc
Confidence 22333555555555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=5.1e-07 Score=87.34 Aligned_cols=90 Identities=27% Similarity=0.285 Sum_probs=41.6
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC-cchHHhhhccCCCEEEcccCCCCCCC-hhh---
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD-PINHHLANLLSLSVIRLRDNHAVSCQ-VPE--- 200 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~--- 200 (348)
..++|+|..|++++++++.. ..+..+++|++|.+.+-.+.. .....+..+.+|+.||++........ +..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl 243 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYL 243 (699)
T ss_pred hhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHH
Confidence 34555555555555555433 234555555555555444432 12234445555555555554322211 111
Q ss_pred -hhhcCCCCCEEEccCCcCCC
Q 035693 201 -FVANLLNLTTLDLSQCDLHG 220 (348)
Q Consensus 201 -~l~~l~~L~~L~l~~~~~~~ 220 (348)
.-..+|+|+.||.+++.+..
T Consensus 244 ec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhcccCccccEEecCCcchhH
Confidence 11134556666666555543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.8e-08 Score=94.08 Aligned_cols=204 Identities=21% Similarity=0.195 Sum_probs=102.8
Q ss_pred ccCCCCCCcccCCCCCC-CCCCccccceEeC--CCCCEEEEeCCCCccccccc-cCCcccccccccCEEeCCCCCCCCCC
Q 035693 17 IFDVDSTPPAKMSQWSE-STDCCDWNGVDCD--EAGHVIGLDLSAEPILIGSL-ENASGLFSLQYLQSLNLGFTLFYGFP 92 (348)
Q Consensus 17 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~c~--~~~~l~~L~ls~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 92 (348)
...++|.|..++..... ..|...+.+..-- -....+.|.+-+.| -.+.. |. .|..|..|+.|.++++.+....
T Consensus 49 ~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~p-a~~pt~pi--~ifpF~sLr~LElrg~~L~~~~ 125 (1096)
T KOG1859|consen 49 ELGLSGAPVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSP-ARDPTEPI--SIFPFRSLRVLELRGCDLSTAK 125 (1096)
T ss_pred hhccCCCCCceeEEecCCcccchHHHHHHHHHHHHhhheeeeecccC-CCCCCCCc--eeccccceeeEEecCcchhhhh
Confidence 34566666666666554 4444444432211 11234444444431 11222 44 6788899999999888776531
Q ss_pred -CCC--------------------------------CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC
Q 035693 93 -MPS--------------------------------SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN 139 (348)
Q Consensus 93 -~~~--------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 139 (348)
+.. ..-.|...++++|.+. .. ...++-++.|+.|+|++
T Consensus 126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--------~m-D~SLqll~ale~LnLsh 196 (1096)
T KOG1859|consen 126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--------LM-DESLQLLPALESLNLSH 196 (1096)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--------hH-HHHHHHHHHhhhhccch
Confidence 111 1112333333443321 00 02245556666666666
Q ss_pred cCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH-HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcC
Q 035693 140 VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH-HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDL 218 (348)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 218 (348)
|++.... .+..++.|+.|+|++|.+.. +|. ....+ +|..|.+++|.. + -...+.++.+|+.||+++|-+
T Consensus 197 Nk~~~v~-----~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l-~--tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 197 NKFTKVD-----NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNAL-T--TLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhhhhH-----HHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHH-H--hhhhHHhhhhhhccchhHhhh
Confidence 6665432 35566666666666666654 222 22222 366666666622 1 223445566666666666665
Q ss_pred CC-cccccccCCCCccEEEccCCCC
Q 035693 219 HG-KFPEKVLQVPTLETLDLSYNSL 242 (348)
Q Consensus 219 ~~-~~~~~l~~~~~L~~L~l~~~~l 242 (348)
.+ .--+.+..+..|+.|.+.+|++
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCcc
Confidence 42 1112234455666666666654
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.7e-06 Score=83.87 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=44.9
Q ss_pred cCCCEEEcccCCCCCCChhhhhh-cCCCCCEEEccCCcCCC-cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcE
Q 035693 181 LSLSVIRLRDNHAVSCQVPEFVA-NLLNLTTLDLSQCDLHG-KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRN 258 (348)
Q Consensus 181 ~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 258 (348)
.+|++|++++........+..++ .+|+|+.|.+++-.+.. ++.....++|+|..||++++++. .+..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--CcHHHhccccHHH
Confidence 34555555554333333333333 24455555555444321 22223334455555555554432 2223333444444
Q ss_pred EEcccCCCCC-CCCccccCCCCCCEEeecCCcc
Q 035693 259 LNLKNTSFSG-KLPDSIGNLENLASVDVSSCNF 290 (348)
Q Consensus 259 L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l 290 (348)
|.+.+-.+.. ..-..+..+++|+.||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 4444433321 0111233445555555554433
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=3.1e-07 Score=68.46 Aligned_cols=133 Identities=23% Similarity=0.276 Sum_probs=85.3
Q ss_pred CCCEEEccCCcCCCccccc---ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693 207 NLTTLDLSQCDLHGKFPEK---VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV 283 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L 283 (348)
.+..++++.|.+. .+++. +.....|..+++++|.+..........++.++.|++++|.+. .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3556777777765 33333 334456667788888764333333334667888888888887 677778888888888
Q ss_pred eecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693 284 DVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 284 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip 344 (348)
+++.|.+.. .|+.+..+.++..|+.-+|.+.. ++...+.. ...-..++.++.+.|+=|
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s-~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARAE-IDVDLFYS-SLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCcccc-CcHHHhcc-ccHHHHHhcCCcccccCc
Confidence 888888876 56666667778888888877754 55543321 222233455556665543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.7e-05 Score=47.60 Aligned_cols=37 Identities=38% Similarity=0.599 Sum_probs=19.0
Q ss_pred CCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 279 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+|++|++++|++.+ ++..++++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 34445555555555555555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.1e-05 Score=62.79 Aligned_cols=89 Identities=26% Similarity=0.303 Sum_probs=43.4
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCCCCCCC--hhhhh
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNHAVSCQ--VPEFV 202 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l 202 (348)
+..++.|..|.+.+|+++.+.+.+ -..+++|+.|.+.+|++... ....+..+++|++|.+-+|+..... -.-.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccch---hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 444555555566666555554422 12245555666666555431 1123445556666666655332211 11234
Q ss_pred hcCCCCCEEEccCCc
Q 035693 203 ANLLNLTTLDLSQCD 217 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~ 217 (348)
..+|+|+.||+..-.
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 455666666665443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=5.5e-07 Score=67.18 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=88.4
Q ss_pred cCCCEEEcccCCCCC-CChhhhhhcCCCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCCCCCCCCCCCCCCCcE
Q 035693 181 LSLSVIRLRDNHAVS-CQVPEFVANLLNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRN 258 (348)
Q Consensus 181 ~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 258 (348)
..+..++|+.|+... ......+....+|...++++|.+. .+|+.| ..++.++.|++++|.+.+.... +..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhh
Confidence 356677787775431 112233445556777788888887 455544 3456888888888886544444 777888888
Q ss_pred EEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693 259 LNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320 (348)
Q Consensus 259 L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 320 (348)
|++..|.+. ..|..+..+.++..|+..+|.... ++..+-..+..-...++++++.+..+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence 888888887 556666667788888888887766 443343334445555677777664443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.6e-05 Score=60.94 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 209 (348)
.+...+++++|++.... .+..++.|.+|.++.|.|+.+.|..-..+++|+.|.+.+|.+....-...+..+|.|+
T Consensus 42 d~~d~iDLtdNdl~~l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhhcc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 35677888888775433 3677788999999999998877766667788999999988654433344567788888
Q ss_pred EEEccCCcCCCc---ccccccCCCCccEEEccCCC
Q 035693 210 TLDLSQCDLHGK---FPEKVLQVPTLETLDLSYNS 241 (348)
Q Consensus 210 ~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~ 241 (348)
+|.+-+|..... -...+..+|+|+.||+++-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888888877531 22356677888888887643
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.5e-05 Score=46.29 Aligned_cols=38 Identities=29% Similarity=0.557 Sum_probs=30.7
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
++|++|++++|+++ .++..++.+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46889999999998 677678889999999999999886
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00031 Score=63.34 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=77.0
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+..|.+++.|++++|.+...+ . -..+|++|++++|.-...+|..+ .++|+.|.+++|.... .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------ 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------
Confidence 455778888888888665443 1 12358888887765434455443 2578888888773222 111
Q ss_pred CCCCEEEccCCcCCCcccccccCC-CCccEEEccCCCC-CCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQV-PTLETLDLSYNSL-LQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV 283 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L 283 (348)
..|+.|++.++... . +..+ +.|+.|.+.+++. .....+.. -.++|++|++++|... ..|..+. .+|+.|
T Consensus 112 ~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~-LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 112 ESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL-ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc-cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 25677777655432 1 1222 2466777644321 11111110 1257888888887755 4444433 477888
Q ss_pred eecCCc
Q 035693 284 DVSSCN 289 (348)
Q Consensus 284 ~L~~n~ 289 (348)
.++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 877653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=2.4e-05 Score=64.98 Aligned_cols=130 Identities=21% Similarity=0.141 Sum_probs=71.0
Q ss_pred EEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC
Q 035693 51 VIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT 130 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (348)
++.+.+..+....+.+.. ..-.+..|+.+.+.+..++...-...+++|++|.++.|.+.. ...+... ...+|
T Consensus 20 v~~l~lD~~~s~~g~~~g--l~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~----~~~l~vl--~e~~P 91 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGG--LTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV----SGGLEVL--AEKAP 91 (260)
T ss_pred hhhhhcchhhhcCCCccc--ccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccc----cccceeh--hhhCC
Confidence 444444444222333332 344566667666666666554333377788888888774321 2222222 45567
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc---chHHhhhccCCCEEEccc
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP---INHHLANLLSLSVIRLRD 190 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~ 190 (348)
+|+++++++|++.. ......+..+.+|.+|++..|..+.. --..+.-+++|++|+-..
T Consensus 92 ~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 92 NLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77777777777764 22224455666677777777655432 113344456666665544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=3e-05 Score=73.04 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=7.3
Q ss_pred CCCCcEEEcccCC
Q 035693 253 NSSLRNLNLKNTS 265 (348)
Q Consensus 253 ~~~L~~L~ls~n~ 265 (348)
++.++.+.+..+.
T Consensus 361 ~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 361 CPKLTDLSLSYCG 373 (482)
T ss_pred CCCcchhhhhhhh
Confidence 5555555555554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00043 Score=62.47 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCcch
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDPIN 174 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~ 174 (348)
.++++++|++++|.++ .+|.. .++|++|.+++|.-....+ ..+ ..+|++|++++| .+.. +|
T Consensus 50 ~~~~l~~L~Is~c~L~-------sLP~L-----P~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~s-LP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIE-------SLPVL-----PNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEISG-LP 111 (426)
T ss_pred HhcCCCEEEeCCCCCc-------ccCCC-----CCCCcEEEccCCCCcccCC---chh--hhhhhheEccCcccccc-cc
Confidence 5789999999998754 22321 2369999998865322222 122 257999999988 4432 33
Q ss_pred HHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCC--cccccccCCCCccEEEccCCCCCCCCCCCCC
Q 035693 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHG--KFPEKVLQVPTLETLDLSYNSLLQGSLPHFP 251 (348)
Q Consensus 175 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 251 (348)
..|+.|++..+... .+..+| +|+.|.+.++.... ..+.. -.++|+.|++.+|... ..++.+.
T Consensus 112 ------~sLe~L~L~~n~~~------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP 176 (426)
T PRK15386 112 ------ESVRSLEIKGSATD------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP 176 (426)
T ss_pred ------cccceEEeCCCCCc------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc
Confidence 46788888754221 123333 57777775433111 11111 1257999999988743 2222233
Q ss_pred CCCCCcEEEcccCC
Q 035693 252 KNSSLRNLNLKNTS 265 (348)
Q Consensus 252 ~~~~L~~L~ls~n~ 265 (348)
.+|+.|.++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 589999987763
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=9.8e-05 Score=61.45 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=56.0
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC--CCCCCCCccccCCCCCCEEeecCCccCC-CCcccccCCCCCC
Q 035693 229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT--SFSGKLPDSIGNLENLASVDVSSCNFTR-PIPTSMANLTQLF 305 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n--~~~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~ 305 (348)
+..|+.+++.+..+ .....+..+++|++|.++.| .+.+.++.-...+++|+++++++|++.. ..-..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gl--tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGL--TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccce--eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455555554433 23344444556666666666 4443343333344677777777777663 1112234556677
Q ss_pred EEeCCCCccCCc--cCchhhhhhcCCCeeecc
Q 035693 306 HLDFSSNHFSDP--IPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 306 ~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~ 335 (348)
.|++.+|..+.. --..++..+++|++||--
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 777777766541 111244455777776643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=1.7e-05 Score=66.50 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=47.1
Q ss_pred EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCCh
Q 035693 44 DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNF 123 (348)
Q Consensus 44 ~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 123 (348)
+|+...+++.|++-|| .+.+ + ..+.+|+.|++|.|+-|.|+...-...|.+|++|+|..|.+.+ +...
T Consensus 14 K~sdl~~vkKLNcwg~-~L~D-I---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-------ldEL 81 (388)
T KOG2123|consen 14 KCSDLENVKKLNCWGC-GLDD-I---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-------LDEL 81 (388)
T ss_pred HhhHHHHhhhhcccCC-CccH-H---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-------HHHH
Confidence 3444456777777777 4432 1 1456777777777777777665222256666666666554321 1122
Q ss_pred hhhcCCCCCcEEEccCcC
Q 035693 124 NFFQNLTELRELYLDNVD 141 (348)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~ 141 (348)
..+.++|.|+.|.|..|.
T Consensus 82 ~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHhcCchhhhHhhccCC
Confidence 334555555555555544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=2.7e-05 Score=65.28 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcc-hH
Q 035693 97 LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI-NH 175 (348)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 175 (348)
+.+.++|++-+|.+. +.+...+++.|++|.|+-|.++... .+..|..|++|+|..|.|.+.. ..
T Consensus 18 l~~vkKLNcwg~~L~----------DIsic~kMp~lEVLsLSvNkIssL~-----pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD----------DISICEKMPLLEVLSLSVNKISSLA-----PLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCcc----------HHHHHHhcccceeEEeeccccccch-----hHHHHHHHHHHHHHhcccccHHHHH
Confidence 445667777766542 2233677778888888888776543 4667778888888888776531 23
Q ss_pred HhhhccCCCEEEcccCCCCCCC----hhhhhhcCCCCCEEE
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQ----VPEFVANLLNLTTLD 212 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~ 212 (348)
-+.++++|+.|.|..|+=-... -...+.-+|+|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4567777888877776321111 112355666776665
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0035 Score=47.50 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=35.0
Q ss_pred hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCC
Q 035693 202 VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLA 281 (348)
Q Consensus 202 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~ 281 (348)
|.++.+|+.+.+.. .+.......+..+++|+.+.+..+ +.......|..+++++.+.+.. .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444442 222122223444444555555443 3333333444444455555533 22211122334445555
Q ss_pred EEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
.+.+..+ +.......+.+. .|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555433 332222333333 555555543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.84 E-value=0.0035 Score=47.46 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=4.1
Q ss_pred CCCccEEEcc
Q 035693 229 VPTLETLDLS 238 (348)
Q Consensus 229 ~~~L~~L~l~ 238 (348)
+++|+.+.+.
T Consensus 80 ~~~l~~i~~~ 89 (129)
T PF13306_consen 80 CTNLKNIDIP 89 (129)
T ss_dssp -TTECEEEET
T ss_pred cccccccccC
Confidence 4444444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=0.00016 Score=68.20 Aligned_cols=32 Identities=28% Similarity=0.181 Sum_probs=19.4
Q ss_pred ccCCCCCCEEeCCCCccCCccCchhhhhhcCC
Q 035693 298 MANLTQLFHLDFSSNHFSDPIPTLRLYMSRNL 329 (348)
Q Consensus 298 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 329 (348)
...+++++.+.+..+...+..-.....+|+.|
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 35677888888888874443223445555555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0019 Score=32.28 Aligned_cols=19 Identities=58% Similarity=0.889 Sum_probs=15.2
Q ss_pred CCCeeecccCcccccCCCCC
Q 035693 328 NLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 328 ~L~~L~l~~n~l~g~ip~~~ 347 (348)
+|++|||++|+++ +||.+|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 4788888888888 888764
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.79 E-value=0.00012 Score=68.19 Aligned_cols=187 Identities=28% Similarity=0.293 Sum_probs=94.1
Q ss_pred CcEEEccCcCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcch----HHhhhc-cCCCEEEcccCCCCCC---Chhhhh
Q 035693 132 LRELYLDNVDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPIN----HHLANL-LSLSVIRLRDNHAVSC---QVPEFV 202 (348)
Q Consensus 132 L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~---~~~~~l 202 (348)
+..+.+.+|.+.+.... +...+...+.|+.|++++|.+.+.-. ..+... +.+++|.+..|..... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 44444444444433222 22233444555555555555543211 111121 3344455544422211 123334
Q ss_pred hcCCCCCEEEccCCcCCC----ccccc----ccCCCCccEEEccCCCCCCCCCC----CCCCCCC-CcEEEcccCCCCCC
Q 035693 203 ANLLNLTTLDLSQCDLHG----KFPEK----VLQVPTLETLDLSYNSLLQGSLP----HFPKNSS-LRNLNLKNTSFSGK 269 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~----~~~~~----l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~-L~~L~ls~n~~~~~ 269 (348)
.....++++++..|.+.. ..+.. +....++++|.+.+|.++..... .+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 444556666666555421 12222 22456788888888766433222 1222333 56688888876532
Q ss_pred ----CCccccCC-CCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCcc
Q 035693 270 ----LPDSIGNL-ENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 270 ----~~~~l~~~-~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
....+... ..++++++..|.+.+ .+...+..++.++.+.+.+|++.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 12223333 567888888888875 33444555678888888888887643
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.17 E-value=0.012 Score=27.24 Aligned_cols=16 Identities=50% Similarity=0.690 Sum_probs=7.4
Q ss_pred CCCeeecccCcccccCC
Q 035693 328 NLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 328 ~L~~L~l~~n~l~g~ip 344 (348)
+|+.|+|++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5666666666665 444
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.17 E-value=0.00092 Score=62.33 Aligned_cols=188 Identities=26% Similarity=0.210 Sum_probs=101.0
Q ss_pred EEEEeCCCCccccccccC--CcccccccccCEEeCCCCCCCCCCCCC------CC-CCCcEEecCCCCCCCCcceeecCC
Q 035693 51 VIGLDLSAEPILIGSLEN--ASGLFSLQYLQSLNLGFTLFYGFPMPS------SL-PRLVTLDLSSREPISGFSWRLEIP 121 (348)
Q Consensus 51 l~~L~ls~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~~~~~~~~~~~~~ 121 (348)
+..+.|.+| .+...... ...+...+.|+.|++++|.+.+.+... .. +.|+.|++..|.++.. +.-+
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~----g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE----GAAP 163 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc----chHH
Confidence 455666666 33221111 013445677777777777776543222 22 4566677777765432 1112
Q ss_pred ChhhhcCCCCCcEEEccCcCCCCcchh-hhhhhC----CCCCCcEEEccCccCCCc----chHHhhhccC-CCEEEcccC
Q 035693 122 NFNFFQNLTELRELYLDNVDLSGRRTE-WCKAMS----FLPNLQVLNLSNCLLSDP----INHHLANLLS-LSVIRLRDN 191 (348)
Q Consensus 122 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~ 191 (348)
-.+.+.....+++++++.|.+...... ....+. ...++++|.+.+|.++.. +...+...++ +..|++..|
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 223455577778888877776432221 112222 356677788877776643 2223333444 666777777
Q ss_pred CCCCCCh---hhhhhcC-CCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCC
Q 035693 192 HAVSCQV---PEFVANL-LNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLL 243 (348)
Q Consensus 192 ~~~~~~~---~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~ 243 (348)
....... ...+..+ ..++++++..|.+.. .+.+.+..++.++.+.+..|.+.
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4433211 2223333 456777777777764 33344555667777777777653
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.48 E-value=0.045 Score=28.38 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=12.1
Q ss_pred cCCCeeecccCcccccCCCC
Q 035693 327 RNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 327 ~~L~~L~l~~n~l~g~ip~~ 346 (348)
++|++|+|++|+|+ .||.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45667777777765 66654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.48 E-value=0.045 Score=28.38 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=12.1
Q ss_pred cCCCeeecccCcccccCCCC
Q 035693 327 RNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 327 ~~L~~L~l~~n~l~g~ip~~ 346 (348)
++|++|+|++|+|+ .||.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45667777777765 66654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.034 Score=44.89 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=39.1
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHh-hhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHL-ANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 208 (348)
.++.++-+++.+....- ..+.+++.++.|.+..|.--+... .-+ .-.++|+.|++++|+.++......+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 34455555555443322 344555555555555554322100 111 1235566666666655555555555555555
Q ss_pred CEEEccC
Q 035693 209 TTLDLSQ 215 (348)
Q Consensus 209 ~~L~l~~ 215 (348)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 5555543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=0.044 Score=44.24 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=44.0
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc-CCCCCEEEccCCc-CCCcccccccCCCCccEEE
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN-LLNLTTLDLSQCD-LHGKFPEKVLQVPTLETLD 236 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 236 (348)
++.++-+++.|...-.+.+..++.++.|.+.+|..+.+.....+++ .++|+.|++++|. +++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 5556666666655555666667777777777775554433333333 2356666666553 2322223344455555555
Q ss_pred ccC
Q 035693 237 LSY 239 (348)
Q Consensus 237 l~~ 239 (348)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.68 E-value=0.16 Score=26.25 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=14.4
Q ss_pred cCCCeeecccCcccccCCC
Q 035693 327 RNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 327 ~~L~~L~l~~n~l~g~ip~ 345 (348)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 56888888888887 7776
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.29 E-value=0.28 Score=24.71 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=4.3
Q ss_pred CCcEEEccCcCC
Q 035693 131 ELRELYLDNVDL 142 (348)
Q Consensus 131 ~L~~L~l~~~~~ 142 (348)
+|++|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 82
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.90 E-value=15 Score=34.10 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=40.5
Q ss_pred CCcEEEcccCCCCCCCCcc--ccCCCCCCEEeecCCccCCC-Ccc--------cccCCCCCCEEeCCCCccCCccCchhh
Q 035693 255 SLRNLNLKNTSFSGKLPDS--IGNLENLASVDVSSCNFTRP-IPT--------SMANLTQLFHLDFSSNHFSDPIPTLRL 323 (348)
Q Consensus 255 ~L~~L~ls~n~~~~~~~~~--l~~~~~L~~L~L~~n~l~~~-~~~--------~l~~~~~L~~L~l~~n~l~~~~~~~~~ 323 (348)
.+++|.+.+|...++.... +...++.+.+.+.+-..... ++. .-....-+..+.++.|+..-.....+.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4667777777665543322 22334556665554333210 000 001122455666666666543222221
Q ss_pred h--hhcCCCeeecccCcc
Q 035693 324 Y--MSRNLNYLNLSSNDL 339 (348)
Q Consensus 324 ~--~~~~L~~L~l~~n~l 339 (348)
. ..+.+..|++++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 1 115677788887755
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.17 E-value=1.4 Score=41.23 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.4
Q ss_pred CCCCCcEEEccCc
Q 035693 128 NLTELRELYLDNV 140 (348)
Q Consensus 128 ~l~~L~~L~l~~~ 140 (348)
..|+|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3445555555554
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.40 E-value=2.1 Score=22.50 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=7.8
Q ss_pred CCCEEeCCCCccCC
Q 035693 303 QLFHLDFSSNHFSD 316 (348)
Q Consensus 303 ~L~~L~l~~n~l~~ 316 (348)
+|++|+|++|.+.+
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555666555543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.05 E-value=0.093 Score=43.49 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=51.1
Q ss_pred cCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCE
Q 035693 227 LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFH 306 (348)
Q Consensus 227 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 306 (348)
..+...+.|+++.|++ ...-..|..+..+..|+++.|++. ..|..++....++.+++..|.... .|.+....+.++.
T Consensus 39 ~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcch
Confidence 3445556666666653 222233333455666667766665 556666665666666666666555 6666677777777
Q ss_pred EeCCCCccC
Q 035693 307 LDFSSNHFS 315 (348)
Q Consensus 307 L~l~~n~l~ 315 (348)
+++.++++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.76 E-value=3.4 Score=21.15 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=4.5
Q ss_pred CCCEEEcccC
Q 035693 182 SLSVIRLRDN 191 (348)
Q Consensus 182 ~L~~L~l~~~ 191 (348)
+|+.|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.64 E-value=4.5 Score=20.97 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=5.1
Q ss_pred CCcEEecCCCC
Q 035693 99 RLVTLDLSSRE 109 (348)
Q Consensus 99 ~L~~L~l~~~~ 109 (348)
+|+.|++++|.
T Consensus 3 ~L~~L~L~~Nk 13 (26)
T smart00365 3 NLEELDLSQNK 13 (26)
T ss_pred ccCEEECCCCc
Confidence 44444444444
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.22 E-value=3.6 Score=38.71 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=42.0
Q ss_pred CCCCcEEEcccCCCCCC--CCccccCCCCCCEEeecCC--ccCCCCccccc--CCCCCCEEeCCCCccCCc
Q 035693 253 NSSLRNLNLKNTSFSGK--LPDSIGNLENLASVDVSSC--NFTRPIPTSMA--NLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 253 ~~~L~~L~ls~n~~~~~--~~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~--~~~~L~~L~l~~n~l~~~ 317 (348)
.+.+..+++++|++... +...-...++|..|+|++| .+.. ...+. +...|++|-+.||++..+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 67788899999987521 2222235689999999999 4433 12222 234688999999998754
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=58.61 E-value=0.21 Score=41.52 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhc
Q 035693 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327 (348)
Q Consensus 248 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 327 (348)
..+..+...+.||++.|++. .+...+..++.+..++++.|.+.. .|..+.+...+..+++..|...- .|..+... +
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~-~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQKKE-P 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCcccccc-C
Confidence 34445677888999998876 444556667788899999998877 77777777788888888887754 66665554 7
Q ss_pred CCCeeecccCccc
Q 035693 328 NLNYLNLSSNDLT 340 (348)
Q Consensus 328 ~L~~L~l~~n~l~ 340 (348)
.++++++.+|.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8899999888775
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.85 E-value=12 Score=34.65 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCCEEEcccCCCCCCChhhhhhcC---CCCCEEEccCCcCCC---cccccccCCCCccEEEccCCC
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANL---LNLTTLDLSQCDLHG---KFPEKVLQVPTLETLDLSYNS 241 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~ 241 (348)
.+++++++.|...+ .++..+..+ ..++.++.++..+.- .-+-..+..+++...+++.|.
T Consensus 215 ~lteldls~n~~Kd-dip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 215 WLTELDLSTNGGKD-DIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred cccccccccCCCCc-cchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 46666676663322 233322221 234555555544321 111122233455555555554
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=31.91 E-value=23 Score=31.41 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCCh----hhhcCCCCCcEEEccCcCCCCcchh-hhhhhCCCCCCcEEEccCccCC
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNF----NFFQNLTELRELYLDNVDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLS 170 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 170 (348)
.-+.|++++++++. .+..+.. ..+.+-.+.+.+.+.+.+..+.... ++..+..+..|++|++.+|.|+
T Consensus 196 nd~~l~evnlnn~~-------~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIR-------RIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred CCCCceeeeccccc-------cCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 56677888887764 1222221 3455566777777777776654432 2233455677888888888887
Q ss_pred Cc-c---hHHhhhccCCCEEEccc
Q 035693 171 DP-I---NHHLANLLSLSVIRLRD 190 (348)
Q Consensus 171 ~~-~---~~~~~~~~~L~~L~l~~ 190 (348)
+. + ..++..-.+|..+.+.+
T Consensus 269 g~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 269 GLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred cHHHHHHHHHHhccchhhHhhhhh
Confidence 74 2 22333334555554443
Done!