Query 035693
Match_columns 348
No_of_seqs 210 out of 3453
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-39 1E-43 285.6 18.9 295 1-342 3-307 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-38 6E-43 312.9 21.9 325 2-346 10-387 (768)
3 4eco_A Uncharacterized protein 100.0 7.6E-38 2.6E-42 302.0 23.8 329 3-346 29-475 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.5E-34 5.2E-39 284.5 25.6 319 2-346 267-715 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-33 3.8E-38 278.7 23.0 287 49-346 343-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1.6E-32 5.4E-37 255.1 23.9 282 49-345 30-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.5E-30 5.2E-35 243.2 23.6 275 49-340 32-333 (477)
8 2id5_A Lingo-1, leucine rich r 100.0 2.9E-30 1E-34 241.3 22.6 256 49-319 56-337 (477)
9 4fcg_A Uncharacterized protein 100.0 1.7E-30 5.9E-35 230.8 16.6 267 3-315 26-314 (328)
10 3t6q_A CD180 antigen; protein- 100.0 4.7E-29 1.6E-33 239.9 26.1 275 49-340 33-363 (606)
11 3oja_B Anopheles plasmodium-re 100.0 3.5E-29 1.2E-33 240.1 23.4 294 22-341 3-338 (597)
12 3t6q_A CD180 antigen; protein- 100.0 7.6E-29 2.6E-33 238.4 24.4 285 50-343 255-563 (606)
13 3o6n_A APL1; leucine-rich repe 100.0 7.3E-29 2.5E-33 225.9 22.6 289 27-340 2-331 (390)
14 1xku_A Decorin; proteoglycan, 100.0 8.3E-28 2.8E-32 214.0 27.3 279 37-338 30-330 (330)
15 4eco_A Uncharacterized protein 100.0 1.9E-29 6.5E-34 243.4 16.2 277 49-347 206-562 (636)
16 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-28 8.9E-33 234.7 22.5 45 126-172 124-168 (606)
17 3v47_A TOLL-like receptor 5B a 100.0 6.3E-28 2.1E-32 224.1 23.8 256 76-345 30-388 (455)
18 4fmz_A Internalin; leucine ric 100.0 2.8E-27 9.6E-32 212.0 26.9 260 49-340 66-346 (347)
19 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-28 9.9E-33 234.4 21.0 167 175-345 370-538 (606)
20 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-28 1.7E-32 215.5 20.9 276 38-337 33-330 (332)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-28 1.3E-32 229.3 20.3 84 49-143 45-128 (520)
22 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-29 2.1E-33 219.5 13.4 236 98-346 50-287 (313)
23 2z63_A TOLL-like receptor 4, v 100.0 1.5E-27 5E-32 227.7 22.5 141 204-345 394-536 (570)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 4.2E-32 227.9 22.0 139 203-346 350-491 (562)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-27 6.1E-32 231.9 23.4 275 49-340 25-366 (680)
26 4fmz_A Internalin; leucine ric 100.0 1.5E-26 5.1E-31 207.3 27.5 265 49-344 44-328 (347)
27 3j0a_A TOLL-like receptor 5; m 100.0 1E-27 3.4E-32 238.6 21.7 285 40-340 16-375 (844)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.9E-32 227.5 21.3 275 49-347 52-469 (562)
29 3o6n_A APL1; leucine-rich repe 100.0 1.4E-27 4.7E-32 217.4 20.3 267 49-341 69-353 (390)
30 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-27 4.4E-32 237.8 21.7 278 49-345 48-398 (844)
31 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-27 5.1E-32 225.3 20.8 275 49-345 21-417 (520)
32 2z80_A TOLL-like receptor 2, v 100.0 2.9E-28 1E-32 218.9 15.0 288 28-343 20-317 (353)
33 4ecn_A Leucine-rich repeat pro 100.0 9.7E-28 3.3E-32 236.3 19.2 275 49-347 491-825 (876)
34 1xku_A Decorin; proteoglycan, 100.0 1.2E-26 4.2E-31 206.4 24.5 266 50-340 32-306 (330)
35 2z63_A TOLL-like receptor 4, v 100.0 8.2E-27 2.8E-31 222.6 24.0 120 226-346 392-513 (570)
36 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-26 5.3E-31 225.2 25.6 290 49-344 296-626 (680)
37 2z66_A Variable lymphocyte rec 100.0 2.3E-27 7.8E-32 208.9 17.9 260 76-346 28-293 (306)
38 2ft3_A Biglycan; proteoglycan, 100.0 7.7E-27 2.6E-31 207.9 20.4 265 50-340 34-307 (332)
39 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-27 7.5E-32 225.6 17.2 129 49-191 26-158 (549)
40 3oja_B Anopheles plasmodium-re 99.9 6.8E-27 2.3E-31 224.2 20.5 268 49-342 75-360 (597)
41 1o6v_A Internalin A; bacterial 99.9 7.7E-26 2.6E-30 210.7 26.6 245 49-316 68-345 (466)
42 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-27 1.5E-31 223.5 18.6 59 49-111 50-111 (549)
43 2z66_A Variable lymphocyte rec 99.9 8.6E-27 2.9E-31 205.2 18.5 251 80-342 11-263 (306)
44 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 7.8E-31 200.4 19.9 214 126-345 52-266 (285)
45 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.5E-30 216.6 25.1 130 49-192 52-184 (635)
46 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-25 6.2E-30 207.0 24.9 207 49-293 42-248 (457)
47 3zyj_A Leucine-rich repeat-con 99.9 1.8E-25 6.3E-30 206.6 23.6 247 52-317 46-294 (440)
48 3zyi_A Leucine-rich repeat-con 99.9 1.8E-25 6.2E-30 207.3 23.2 228 76-317 75-305 (452)
49 1o6v_A Internalin A; bacterial 99.9 6.2E-25 2.1E-29 204.5 25.3 259 49-341 46-345 (466)
50 3zyj_A Leucine-rich repeat-con 99.9 2.7E-25 9.2E-30 205.5 21.9 226 49-291 64-292 (440)
51 1ozn_A Reticulon 4 receptor; N 99.9 4.4E-25 1.5E-29 192.2 21.2 211 129-343 31-241 (285)
52 4fcg_A Uncharacterized protein 99.9 1.4E-25 4.9E-30 199.1 18.4 206 126-340 100-314 (328)
53 3zyi_A Leucine-rich repeat-con 99.9 1.8E-25 6.1E-30 207.4 19.7 226 49-292 75-304 (452)
54 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-24 1.1E-28 198.7 24.0 267 49-347 64-394 (457)
55 2z80_A TOLL-like receptor 2, v 99.9 1.5E-25 5.2E-30 201.2 14.6 255 49-319 52-318 (353)
56 3o53_A Protein LRIM1, AGAP0063 99.9 3E-26 1E-30 202.7 9.4 266 49-345 10-281 (317)
57 1wwl_A Monocyte differentiatio 99.9 7.4E-27 2.5E-31 206.1 4.9 248 73-341 40-310 (312)
58 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-25 3.2E-29 208.4 17.0 268 26-345 10-302 (622)
59 1wwl_A Monocyte differentiatio 99.9 9.9E-27 3.4E-31 205.3 3.0 270 28-316 21-310 (312)
60 4g8a_A TOLL-like receptor 4; l 99.9 8.2E-24 2.8E-28 204.1 22.7 110 49-171 76-187 (635)
61 3rfs_A Internalin B, repeat mo 99.9 5.4E-24 1.8E-28 184.1 17.8 183 154-347 60-242 (272)
62 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.9E-28 181.2 20.4 217 34-290 1-217 (270)
63 1jl5_A Outer protein YOPM; leu 99.9 3E-23 1E-27 192.0 23.7 256 49-347 131-418 (454)
64 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-26 3.6E-31 216.1 -1.7 284 50-342 86-413 (461)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-25 8.4E-30 196.8 4.4 241 49-316 34-277 (317)
66 1jl5_A Outer protein YOPM; leu 99.9 3.6E-22 1.2E-26 184.8 25.4 253 49-347 91-379 (454)
67 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.5E-29 193.7 7.6 211 36-264 35-257 (336)
68 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-25 5.8E-30 208.0 1.8 212 130-341 142-384 (461)
69 3oja_A Leucine-rich immune mol 99.9 8.3E-24 2.8E-28 197.6 12.6 235 73-335 31-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 4.1E-23 1.4E-27 178.9 15.2 224 81-319 12-241 (276)
71 3rfs_A Internalin B, repeat mo 99.9 2.1E-23 7.1E-28 180.4 12.7 227 75-324 18-244 (272)
72 2z62_A TOLL-like receptor 4, v 99.9 1.1E-22 3.9E-27 176.1 17.3 206 76-293 28-239 (276)
73 3oja_A Leucine-rich immune mol 99.9 6.1E-24 2.1E-28 198.5 9.2 235 49-310 34-270 (487)
74 2o6q_A Variable lymphocyte rec 99.9 9.4E-22 3.2E-26 169.8 22.0 185 130-318 37-221 (270)
75 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.5E-29 195.3 4.9 264 71-337 27-340 (386)
76 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 172.0 20.1 203 96-317 8-210 (290)
77 1p9a_G Platelet glycoprotein I 99.9 6.6E-21 2.3E-25 166.1 21.0 204 71-292 5-209 (290)
78 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.3E-27 177.4 10.7 201 131-341 92-308 (310)
79 2ca6_A RAN GTPase-activating p 99.9 5.9E-23 2E-27 186.5 6.6 258 49-311 32-339 (386)
80 4glp_A Monocyte differentiatio 99.9 4.9E-22 1.7E-26 175.1 12.1 229 74-316 62-308 (310)
81 1h6u_A Internalin H; cell adhe 99.9 9.4E-21 3.2E-25 166.6 17.7 213 76-316 19-231 (308)
82 3m19_A Variable lymphocyte rec 99.9 1.9E-20 6.5E-25 159.8 18.9 180 131-317 15-194 (251)
83 3goz_A Leucine-rich repeat-con 99.9 5E-22 1.7E-26 178.9 8.8 259 53-320 2-302 (362)
84 3g06_A SSPH2 (leucine-rich rep 99.9 4.8E-20 1.6E-24 176.0 22.4 229 49-322 61-304 (622)
85 3goz_A Leucine-rich repeat-con 99.9 3.8E-22 1.3E-26 179.6 6.9 257 80-342 2-299 (362)
86 2ast_B S-phase kinase-associat 99.8 1.6E-21 5.4E-26 173.7 9.4 233 49-299 70-314 (336)
87 3m19_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 156.7 18.2 181 157-342 14-194 (251)
88 3ogk_B Coronatine-insensitive 99.8 6.7E-22 2.3E-26 189.4 6.2 286 49-342 164-528 (592)
89 1h6u_A Internalin H; cell adhe 99.8 9.7E-20 3.3E-24 160.1 18.9 195 72-292 37-231 (308)
90 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.7E-25 160.1 12.4 177 153-337 51-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 5.2E-20 1.8E-24 155.9 13.0 177 126-312 51-236 (239)
92 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.4E-24 148.8 14.6 175 133-321 10-184 (208)
93 3ogk_B Coronatine-insensitive 99.8 2.1E-21 7.3E-26 185.9 1.0 282 50-342 139-503 (592)
94 2p1m_B Transport inhibitor res 99.8 2.7E-20 9.2E-25 178.3 3.8 209 128-340 287-519 (594)
95 2o6s_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 141.5 14.4 160 130-300 28-187 (208)
96 1h6t_A Internalin B; cell adhe 99.8 5.9E-18 2E-22 147.5 15.7 173 126-316 42-214 (291)
97 2p1m_B Transport inhibitor res 99.8 3.3E-20 1.1E-24 177.8 0.7 113 229-342 371-496 (594)
98 3cvr_A Invasion plasmid antige 99.8 3.9E-18 1.3E-22 160.9 14.7 187 98-324 59-252 (571)
99 4ay9_X Follicle-stimulating ho 99.8 6.7E-18 2.3E-22 151.1 15.5 223 75-312 29-256 (350)
100 1h6t_A Internalin B; cell adhe 99.8 7.1E-18 2.4E-22 147.0 15.1 192 75-292 23-214 (291)
101 3cvr_A Invasion plasmid antige 99.8 4.9E-18 1.7E-22 160.3 12.5 209 28-300 33-252 (571)
102 1m9s_A Internalin B; cell inva 99.7 6.4E-18 2.2E-22 161.1 12.7 193 96-316 19-211 (605)
103 4ay9_X Follicle-stimulating ho 99.7 2.3E-17 7.7E-22 147.7 13.4 225 101-345 12-241 (350)
104 1m9s_A Internalin B; cell inva 99.7 3.5E-17 1.2E-21 155.9 15.5 194 74-293 19-212 (605)
105 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 133.2 13.7 154 178-341 41-195 (197)
106 4ezg_A Putative uncharacterize 99.7 2E-17 7E-22 135.6 10.8 152 156-316 43-195 (197)
107 2v9t_B SLIT homolog 2 protein 99.7 7E-17 2.4E-21 134.7 14.3 152 133-291 14-165 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 6.1E-17 2.1E-21 135.1 13.0 153 133-292 14-167 (220)
109 2xot_A Amphoterin-induced prot 99.7 6.3E-17 2.2E-21 145.4 12.9 178 132-317 20-204 (361)
110 3e6j_A Variable lymphocyte rec 99.7 2.9E-16 9.8E-21 131.9 16.0 136 181-318 40-175 (229)
111 3e6j_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 131.8 16.0 157 182-344 20-176 (229)
112 2xot_A Amphoterin-induced prot 99.7 8.7E-17 3E-21 144.5 12.8 178 100-292 20-203 (361)
113 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 8.8E-21 131.3 14.5 155 159-317 13-167 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 5.6E-16 1.9E-20 129.2 15.2 112 126-241 53-164 (220)
115 1xeu_A Internalin C; cellular 99.7 7.2E-17 2.4E-21 138.4 9.1 171 96-293 17-187 (263)
116 1xeu_A Internalin C; cellular 99.7 3.4E-16 1.2E-20 134.2 13.1 171 128-317 17-187 (263)
117 2ell_A Acidic leucine-rich nuc 99.7 4.7E-16 1.6E-20 124.0 12.4 138 205-346 23-165 (168)
118 1dce_A Protein (RAB geranylger 99.6 2.4E-17 8.2E-22 156.2 -0.7 197 127-334 346-567 (567)
119 4b8c_D Glucose-repressible alc 99.6 4.3E-16 1.5E-20 152.0 6.6 144 199-346 217-360 (727)
120 2je0_A Acidic leucine-rich nuc 99.6 3.7E-15 1.2E-19 116.3 10.7 129 205-336 16-149 (149)
121 1w8a_A SLIT protein; signaling 99.6 6.2E-15 2.1E-19 120.2 11.9 134 183-320 10-144 (192)
122 3sb4_A Hypothetical leucine ri 99.6 2E-16 6.7E-21 140.3 3.1 242 75-334 48-328 (329)
123 1dce_A Protein (RAB geranylger 99.6 3E-17 1E-21 155.5 -3.2 185 153-345 345-551 (567)
124 2o6r_A Variable lymphocyte rec 99.6 3E-14 1E-18 114.5 14.0 134 182-319 8-141 (177)
125 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.5E-19 118.2 11.8 132 159-294 10-142 (192)
126 4b8c_D Glucose-repressible alc 99.6 4.3E-16 1.5E-20 152.0 1.7 190 5-224 133-334 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 4.7E-14 1.6E-18 112.3 12.5 133 98-242 24-159 (168)
128 2je0_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 110.7 10.3 107 127-238 39-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.5 8.6E-14 2.9E-18 113.4 12.4 131 183-318 12-142 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 113.7 9.5 133 203-340 16-153 (176)
131 3sb4_A Hypothetical leucine ri 99.5 5E-14 1.7E-18 124.8 10.8 241 49-309 49-328 (329)
132 2wfh_A SLIT homolog 2 protein 99.5 2.7E-13 9.1E-18 110.5 13.4 129 159-292 12-140 (193)
133 2o6r_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 106.9 14.1 131 159-293 9-139 (177)
134 4fdw_A Leucine rich hypothetic 99.5 4.1E-12 1.4E-16 115.2 19.7 200 126-338 176-381 (401)
135 4fdw_A Leucine rich hypothetic 99.4 9E-12 3.1E-16 113.0 18.4 246 73-345 110-362 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-12 5.4E-17 104.3 10.7 130 71-218 14-152 (176)
137 3un9_A NLR family member X1; l 99.4 1.3E-14 4.4E-19 130.4 -2.8 163 129-292 71-253 (372)
138 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 98.6 12.8 108 208-318 11-118 (170)
139 1ds9_A Outer arm dynein; leuci 99.3 6.3E-15 2.1E-19 120.8 -7.6 83 254-340 93-185 (198)
140 3g39_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 98.0 11.9 108 232-343 11-118 (170)
141 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.1E-19 118.5 -6.9 137 203-345 15-158 (198)
142 2r9u_A Variable lymphocyte rec 99.3 2.9E-11 9.8E-16 96.6 12.4 106 209-317 15-120 (174)
143 3un9_A NLR family member X1; l 99.3 1.3E-13 4.4E-18 123.9 -2.4 185 156-340 71-283 (372)
144 2r9u_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 96.0 11.9 106 232-341 14-119 (174)
145 4fs7_A Uncharacterized protein 99.1 4.5E-09 1.5E-13 95.2 17.5 271 49-337 71-376 (394)
146 2ra8_A Uncharacterized protein 99.0 1.9E-10 6.5E-15 102.5 6.1 203 130-338 107-341 (362)
147 2ifg_A High affinity nerve gro 99.0 1.3E-09 4.5E-14 96.9 10.9 103 211-316 13-117 (347)
148 2ifg_A High affinity nerve gro 99.0 9.7E-10 3.3E-14 97.8 9.5 103 234-340 12-116 (347)
149 2ra8_A Uncharacterized protein 99.0 4.2E-10 1.4E-14 100.3 6.8 40 253-292 278-321 (362)
150 4fs7_A Uncharacterized protein 98.9 7.6E-08 2.6E-12 87.1 17.4 250 70-344 65-358 (394)
151 4gt6_A Cell surface protein; l 98.9 1.2E-07 4.2E-12 85.7 18.4 107 226-337 261-367 (394)
152 4gt6_A Cell surface protein; l 98.8 1.7E-07 5.7E-12 84.8 15.2 132 200-339 259-390 (394)
153 1io0_A Tropomodulin; LRR prote 98.7 3.8E-08 1.3E-12 79.2 7.0 116 126-241 32-162 (185)
154 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.6E-13 80.5 3.0 96 148-243 27-136 (185)
155 4h09_A Hypothetical leucine ri 98.5 4.1E-06 1.4E-10 75.2 17.2 107 225-335 235-341 (379)
156 3e4g_A ATP synthase subunit S, 98.5 2.4E-07 8.2E-12 73.0 6.8 83 131-216 62-149 (176)
157 3e4g_A ATP synthase subunit S, 98.4 2.8E-07 9.5E-12 72.6 4.4 85 157-241 61-150 (176)
158 3rw6_A Nuclear RNA export fact 98.3 5.1E-07 1.7E-11 76.5 4.3 83 154-237 167-258 (267)
159 4h09_A Hypothetical leucine ri 98.2 8.8E-05 3E-09 66.4 17.8 146 174-326 210-355 (379)
160 3rw6_A Nuclear RNA export fact 98.2 2.3E-06 7.8E-11 72.5 6.6 79 253-333 169-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 2.5E-06 8.6E-11 68.4 -0.2 115 200-314 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 9.9E-05 3.4E-09 59.1 6.9 40 152-191 65-108 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0074 2.5E-07 44.8 6.8 37 255-291 32-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0066 2.3E-07 45.1 6.1 59 257-317 11-70 (130)
165 2lz0_A Uncharacterized protein 51.0 26 0.0009 24.0 4.8 35 226-261 16-50 (100)
166 2lz0_A Uncharacterized protein 43.6 49 0.0017 22.6 5.2 45 242-287 8-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-39 Score=285.58 Aligned_cols=295 Identities=27% Similarity=0.427 Sum_probs=217.0
Q ss_pred CchHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCcc--ccceEeCCC---CCEEEEeCCCCccccc--cccCCcccc
Q 035693 1 CQSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCD--WNGVDCDEA---GHVIGLDLSAEPILIG--SLENASGLF 73 (348)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~c~~~---~~l~~L~ls~~~~~~~--~~~~~~~l~ 73 (348)
|.+.|+.||.+||+++. +| . .+.+|..+.|+|. |.||.|... .+|++|+++++ .+.+ .+|. .+.
T Consensus 3 c~~~~~~aL~~~k~~~~-~~----~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-~l~~~~~~~~--~l~ 73 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLG-NP----T-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYPIPS--SLA 73 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CC----G-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-CCSSCEECCG--GGG
T ss_pred CCHHHHHHHHHHHHhcC-Cc----c-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-CccCCcccCh--hHh
Confidence 89999999999999984 32 2 6899999999998 999999864 68999999999 8887 7776 888
Q ss_pred cccccCEEeCCC-CCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 74 SLQYLQSLNLGF-TLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 74 ~~~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
++++|++|++++ |.+.+. +| .. +.++++|++|++++|.+....+ ..
T Consensus 74 ~l~~L~~L~L~~~n~l~~~-~p---------------------------~~--l~~l~~L~~L~Ls~n~l~~~~p---~~ 120 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGP-IP---------------------------PA--IAKLTQLHYLYITHTNVSGAIP---DF 120 (313)
T ss_dssp GCTTCSEEEEEEETTEESC-CC---------------------------GG--GGGCTTCSEEEEEEECCEEECC---GG
T ss_pred CCCCCCeeeCCCCCccccc-CC---------------------------hh--HhcCCCCCEEECcCCeeCCcCC---HH
Confidence 999999999984 766654 22 22 5556666666666666553333 34
Q ss_pred hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCCcccccccCCCC
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHGKFPEKVLQVPT 231 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~ 231 (348)
+..+++|++|++++|.+.+.+|..+..+++|++|++++| .+.+.++..+..++ .|++|++++|.+.+..|..+..++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 556666666666666666556666666677777777766 33334555666666 677777777777666666666665
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
|+.|++++|.+.......+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 77777777776555555666677788888888877754443 66678888888888888877888888888888888888
Q ss_pred CccCCccCchhhhhhcCCCeeecccCc-cccc
Q 035693 312 NHFSDPIPTLRLYMSRNLNYLNLSSND-LTGG 342 (348)
Q Consensus 312 n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~g~ 342 (348)
|++.+.+|.. ...++|+.+++++|+ +.|.
T Consensus 278 N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 278 NNLCGEIPQG--GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SEEEEECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred CcccccCCCC--ccccccChHHhcCCCCccCC
Confidence 8888777775 344788888888886 6663
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-38 Score=312.91 Aligned_cols=325 Identities=26% Similarity=0.332 Sum_probs=185.2
Q ss_pred chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCCCCccccceEeCCCCCEEEEeCCCCcccccc---ccC----------
Q 035693 2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGS---LEN---------- 68 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~---~~~---------- 68 (348)
.+.|+.||.+||+++. || . .+++|..++|||.|.||+|+ .++|+.|+|+++ .+.+. +|.
T Consensus 10 ~~~~~~all~~k~~~~-~~----~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 10 LYREIHQLISFKDVLP-DK----N-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp HHHHHHHHHHHHTTCS-CT----T-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCE
T ss_pred CHHHHHHHHHHHhhCC-Cc----c-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCC-CcCCccCccChhHhccCcccc
Confidence 3578999999999984 43 3 78999999999999999998 589999999998 66655 332
Q ss_pred -----------CcccccccccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCC
Q 035693 69 -----------ASGLFSLQYLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTEL 132 (348)
Q Consensus 69 -----------~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 132 (348)
...+.++++|++|++++|.+++. +|. .+++|++|++++|.+. ...+.. .+.++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~------~~~~~~-~~~~l~~L 153 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLD------FPGKVS-GGLKLNSL 153 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEE------CCSSCC-SCCCCTTC
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccC------CcCCHH-HhccCCCC
Confidence 12556667777777777766653 222 5667777777776542 122211 12456666
Q ss_pred cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212 (348)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 212 (348)
++|++++|.+++..+.....+.++++|++|++++|.+.+..+. ..+++|++|++++|. .....+. +..+++|++|+
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEE
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEE
Confidence 6666666666554432212244455555555555544432221 344555555555552 2222222 45555555555
Q ss_pred ccCCcCCCcccccccCCCCccEEEccCCCC----------------------CCCCCCCCCC-CCCCcEEEcccCCCCCC
Q 035693 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSL----------------------LQGSLPHFPK-NSSLRNLNLKNTSFSGK 269 (348)
Q Consensus 213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l----------------------~~~~~~~~~~-~~~L~~L~ls~n~~~~~ 269 (348)
+++|.+.+..|..+..+++|++|++++|.+ ....+..+.. +++|++|++++|.+.+.
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 555555545555555555555555555543 2222222322 25555555555555555
Q ss_pred CCccccCCCCCCEEeecCCccCCCCccc-ccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 270 LPDSIGNLENLASVDVSSCNFTRPIPTS-MANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 270 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|..+....++|++|++++|.++|.+|..
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 5555555555555555555555434433 5555556666666665555555544443235666666666666555543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.6e-38 Score=301.99 Aligned_cols=329 Identities=19% Similarity=0.254 Sum_probs=243.4
Q ss_pred hHHHHHHHHHhhhCccC---CCCCCcccCCCCCCCCCCccc---cceEeCCCCCEEEEeCCCCccccccccCCccccccc
Q 035693 3 SDQKLLLIQMKNSFIFD---VDSTPPAKMSQWSESTDCCDW---NGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQ 76 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~w~~~~~~~~~---~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~ 76 (348)
-+|+.||+++++++..+ -.+.+++..++|..+.++|.| .||+|+..++|+.|+|+++ .+.|.+|. .+++++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~-~l~g~lp~--~l~~L~ 105 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF-GASGRVPD--AIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTS-CCEEEECG--GGGGCT
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCc-ccCCcCCh--HHhcCc
Confidence 36899999999997422 122334456699999999999 9999987789999999999 99999997 999999
Q ss_pred ccCEEeCCCCCC------CC------------------------------------------------------------
Q 035693 77 YLQSLNLGFTLF------YG------------------------------------------------------------ 90 (348)
Q Consensus 77 ~L~~L~l~~~~~------~~------------------------------------------------------------ 90 (348)
+|+.|++++|.+ .+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999999854 11
Q ss_pred ----------CCCCC---CCCCCcEEecCCCCCCCC-cc----------eeecCCChhhhc--CCCCCcEEEccCcCCCC
Q 035693 91 ----------FPMPS---SLPRLVTLDLSSREPISG-FS----------WRLEIPNFNFFQ--NLTELRELYLDNVDLSG 144 (348)
Q Consensus 91 ----------~~~~~---~~~~L~~L~l~~~~~~~~-~~----------~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~ 144 (348)
.++|. .+++|++|++++|.++.. .. ....+|.. +. ++++|++|++++|.+.+
T Consensus 186 l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCS
T ss_pred hhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCc
Confidence 01333 789999999999997531 00 00016766 67 99999999999999887
Q ss_pred cchhhhhhhCCCCCCcEEEccCcc-CCC-cchHHhhhc------cCCCEEEcccCCCCCCChhh--hhhcCCCCCEEEcc
Q 035693 145 RRTEWCKAMSFLPNLQVLNLSNCL-LSD-PINHHLANL------LSLSVIRLRDNHAVSCQVPE--FVANLLNLTTLDLS 214 (348)
Q Consensus 145 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~ 214 (348)
..+ ..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.. + .++. .+..+++|++|+++
T Consensus 264 ~~p---~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 264 KLP---TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp SCC---TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S-SCCCHHHHTTCTTCCEEECC
T ss_pred cCh---HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C-ccCchhhhccCCCCCEEeCc
Confidence 666 678899999999999998 887 788888876 9999999999954 4 5676 88999999999999
Q ss_pred CCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC-CcEEEcccCCCCCCCCccccCCC--CCCEEeecCCccC
Q 035693 215 QCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS-LRNLNLKNTSFSGKLPDSIGNLE--NLASVDVSSCNFT 291 (348)
Q Consensus 215 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~~~--~L~~L~L~~n~l~ 291 (348)
+|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.++ .+|..+.... +|+.|++++|.+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 999887777 6777777888888777765 33334555666 777777777776 5666555433 6777777777776
Q ss_pred CCCccccc-------CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 292 RPIPTSMA-------NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 292 ~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+..|..+. .+++|+.|++++|++.. +|...+..+++|++|++++|.++ .+|..
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 66665555 55566677777766663 55555554466666666666666 56554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-34 Score=284.55 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=235.8
Q ss_pred chHHHHHHHHHhhhCccCCCCCCcccCCCCCCCC-----CC--ccc------------cceEeCCCCCEEEEeCCCCccc
Q 035693 2 QSDQKLLLIQMKNSFIFDVDSTPPAKMSQWSEST-----DC--CDW------------NGVDCDEAGHVIGLDLSAEPIL 62 (348)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--~~~------------~~~~c~~~~~l~~L~ls~~~~~ 62 (348)
..+|+.||.+||+++. +| +|..+. ++ |.| .||.|+...+|+.|+|+++ .+
T Consensus 267 ~~~d~~ALl~~k~~l~-~~---------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~-~L 335 (876)
T 4ecn_A 267 YIKDYKALKAIWEALD-GK---------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF-GA 335 (876)
T ss_dssp HHHHHHHHHHHHHHTT-GG---------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT-CC
T ss_pred chHHHHHHHHHHHHcC-CC---------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC-CC
Confidence 3579999999999984 33 454332 44 788 9999987789999999999 99
Q ss_pred cccccCCcccccccccCEEeC-CCCCCCCC--------------------------------------------------
Q 035693 63 IGSLENASGLFSLQYLQSLNL-GFTLFYGF-------------------------------------------------- 91 (348)
Q Consensus 63 ~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~-------------------------------------------------- 91 (348)
.|.+|. .++++++|+.|+| ++|.+++.
T Consensus 336 ~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 336 KGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp EEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999997 9999999999999 66643222
Q ss_pred -------------------------CCCC---CCCCCcEEecCCCCCCCC-cc----------eeecCCChhhhc--CCC
Q 035693 92 -------------------------PMPS---SLPRLVTLDLSSREPISG-FS----------WRLEIPNFNFFQ--NLT 130 (348)
Q Consensus 92 -------------------------~~~~---~~~~L~~L~l~~~~~~~~-~~----------~~~~~~~~~~~~--~l~ 130 (348)
++|. .+++|++|++++|.++.. .. ....+|.. +. +++
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~--l~f~~L~ 491 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE--LSWSNLK 491 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCT
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh--hhhccCC
Confidence 0333 688999999999987531 00 00026665 55 899
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCC-cchHHhhhcc-------CCCEEEcccCCCCCCChhh-
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSD-PINHHLANLL-------SLSVIRLRDNHAVSCQVPE- 200 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~- 200 (348)
+|+.|++++|.+....+ ..+.++++|++|++++|. +++ .+|..+..++ +|+.|++++|.. . .++.
T Consensus 492 ~L~~L~Ls~N~l~~~iP---~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~-~ip~~ 566 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLP---DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E-EFPAS 566 (876)
T ss_dssp TCCEEEEESCTTCCSCC---GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C-BCCCH
T ss_pred CCCEEECcCCCCCccCh---HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C-ccCCh
Confidence 99999999998877665 578889999999999998 887 7888777766 999999999854 4 5666
Q ss_pred -hhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC-CcEEEcccCCCCCCCCccccCCC
Q 035693 201 -FVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS-LRNLNLKNTSFSGKLPDSIGNLE 278 (348)
Q Consensus 201 -~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~~~ 278 (348)
.+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. .+|..+...+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 7889999999999999988 777 7888899999999999876 44445666777 999999998887 6676665543
Q ss_pred --CCCEEeecCCccCCCCcccc---c--CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 279 --NLASVDVSSCNFTRPIPTSM---A--NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 279 --~L~~L~L~~n~l~~~~~~~l---~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+|+.|++++|.+.+.+|... . ..++|+.|++++|++.. +|...+..+++|+.|+|++|.++ .+|..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 37777777777766444221 1 22356666666666653 55555544456666666666665 55554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-33 Score=278.72 Aligned_cols=287 Identities=28% Similarity=0.358 Sum_probs=211.9
Q ss_pred CCEEEEeCCCCccccccccCCccccccc-ccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCC---------
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQ-YLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISG--------- 113 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~--------- 113 (348)
.++++|++++| .+.+.+|. .+.+++ +|+.|++++|.+++. ++. .+++|++|++++|.+...
T Consensus 343 ~~L~~L~Ls~n-~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 343 RGLKVLDLSFN-EFSGELPE--SLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCCEEECCSS-EEEECCCT--THHHHTTTCSEEECCSSEEEEE-CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred CCCCEEeCcCC-ccCccccH--HHHhhhcCCcEEEccCCCcCCC-cChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 56777777777 66666665 555555 666666666655543 222 134444444444433110
Q ss_pred ---------cceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCC
Q 035693 114 ---------FSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLS 184 (348)
Q Consensus 114 ---------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 184 (348)
......+|.. +.++++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIP---QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp TCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCC---HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 0012233333 6666777777777777665444 4566777888888888888877777888888888
Q ss_pred EEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCC-----------------
Q 035693 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL----------------- 247 (348)
Q Consensus 185 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----------------- 247 (348)
+|++++| ...+.++..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++....+
T Consensus 494 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 8888888 4555677778888888888888888887888888888888888888886542211
Q ss_pred -----------------------------------------------------CCCCCCCCCcEEEcccCCCCCCCCccc
Q 035693 248 -----------------------------------------------------PHFPKNSSLRNLNLKNTSFSGKLPDSI 274 (348)
Q Consensus 248 -----------------------------------------------------~~~~~~~~L~~L~ls~n~~~~~~~~~l 274 (348)
..+..+++|++|++++|++++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 123335789999999999999999999
Q ss_pred cCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 275 GNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 275 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+.+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+... ++|++||+++|+++|+||+.
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-CCCSEEECCSSEEEEECCSS
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999899876554 89999999999999999974
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-32 Score=255.11 Aligned_cols=282 Identities=21% Similarity=0.186 Sum_probs=209.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC----CCCCCCcEEecCCCCCCCCcceeecCCChh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP----SSLPRLVTLDLSSREPISGFSWRLEIPNFN 124 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 124 (348)
+++++|+|++| .+.+..|. .+.++++|++|++++|.+.+. ++ ..+++|++|++++|.+. ...+..
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~- 98 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFL------QLETGA- 98 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTC------EECTTT-
T ss_pred CccCEEEecCC-ccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccC------ccChhh-
Confidence 57899999999 77766565 788999999999999887643 32 27889999999998864 233444
Q ss_pred hhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH-hhhccCCCEEEcccCCCCCCChhhhhh
Q 035693 125 FFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH-LANLLSLSVIRLRDNHAVSCQVPEFVA 203 (348)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~ 203 (348)
+.++++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+..|.. +..+++|++|++++|.. ....+..+.
T Consensus 99 -~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~ 175 (455)
T 3v47_A 99 -FNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLL 175 (455)
T ss_dssp -TTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSG
T ss_pred -ccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhh
Confidence 67788888888888877653321 012667778888888888877765554 67777788888777743 222121111
Q ss_pred c----------------------------------C--------------------------------------------
Q 035693 204 N----------------------------------L-------------------------------------------- 205 (348)
Q Consensus 204 ~----------------------------------l-------------------------------------------- 205 (348)
. +
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 1 1
Q ss_pred -------------------CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCC
Q 035693 206 -------------------LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSF 266 (348)
Q Consensus 206 -------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~ 266 (348)
++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 3455666666666555566677888899999998887766666788888999999999988
Q ss_pred CCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 267 SGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 267 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ ++...+..+++|++|++++|++++.+|.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCCCc
Confidence 86667788888999999999999988778888889999999999999987 5555555668899999999999988874
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=243.21 Aligned_cols=275 Identities=22% Similarity=0.206 Sum_probs=172.8
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.+++.|+|++| .+.+..+. .+.++++|++|++++|.+++. .+. .+++|++|++++|.+.. ++. ..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~-------~~~-~~ 99 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKL-------IPL-GV 99 (477)
T ss_dssp TTCSEEECCSS-CCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCS-------CCT-TS
T ss_pred CCCcEEECCCC-ccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCc-------cCc-cc
Confidence 47888888888 77655554 778888888888888888775 333 77888888888887642 221 22
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+.++++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|. ++...+..+..+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 175 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLD---YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred ccCCCCCCEEECCCCccccCCh---hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence 5677888888888887766544 456677778888887777777666677777777777777773 344445566777
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCC------------------------CCCCCCCCcEEEc
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLP------------------------HFPKNSSLRNLNL 261 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~------------------------~~~~~~~L~~L~l 261 (348)
++|+.|++++|.+....+..+..+++|+.|++++|.......+ .+..+++|++|++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 7777777777776654444556666666666665543322222 2333455555555
Q ss_pred ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|+++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCcc
Confidence 5555553333444555555555555555555445555555566666666665554 33333333455666666666554
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=241.27 Aligned_cols=256 Identities=24% Similarity=0.277 Sum_probs=196.0
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.+|++|+|++| .+.+..|. .+.++++|+.|++++|.++.... ...+++|++|++++|.+.. ..+.. +
T Consensus 56 ~~L~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~--~ 124 (477)
T 2id5_A 56 PHLEELELNEN-IVSAVEPG--AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI------LLDYM--F 124 (477)
T ss_dssp TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE------ECTTT--T
T ss_pred CCCCEEECCCC-ccCEeChh--hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc------CChhH--c
Confidence 68999999999 78766665 78899999999999998887521 1278999999999998642 23333 6
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
.++++|++|++++|.+....+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.. ....+..+..++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~ 200 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLY 200 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECT---TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCT
T ss_pred cccccCCEEECCCCccceeCh---hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC-cEeChhhcccCc
Confidence 777788888888877766554 4566777777777777777766566677777777777776632 222222333333
Q ss_pred ------------------------CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693 207 ------------------------NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262 (348)
Q Consensus 207 ------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls 262 (348)
+|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECC
Confidence 55666666666663333467888999999999999877777778889999999999
Q ss_pred cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693 263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319 (348)
Q Consensus 263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 319 (348)
+|++.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+...
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999997778889999999999999999999777778889999999999999987543
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.7e-30 Score=230.82 Aligned_cols=267 Identities=23% Similarity=0.303 Sum_probs=162.7
Q ss_pred hHHHHHHHHHhhhCccCCCCCCcccCCCC----CCCCCCccccceEeCC---------CCCEEEEeCCCCccccccccCC
Q 035693 3 SDQKLLLIQMKNSFIFDVDSTPPAKMSQW----SESTDCCDWNGVDCDE---------AGHVIGLDLSAEPILIGSLENA 69 (348)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~~~~~~~~c~~---------~~~l~~L~ls~~~~~~~~~~~~ 69 (348)
+++..+|..||..+..++. .++..| ..+.++|.|.|+.|.. ..+|++|+|+++ .+. .+|.
T Consensus 26 ~~~~~aLl~~k~~~~~~~~----~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-~l~-~lp~- 98 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLP-QFPD- 98 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCT----THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-CCS-SCCS-
T ss_pred chHHHHHHHHHHhccCCch----hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-Cch-hcCh-
Confidence 4678899999998755654 677899 4588899999999842 256788888877 665 5665
Q ss_pred cccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693 70 SGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW 149 (348)
Q Consensus 70 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 149 (348)
.+.++++|++|++++|.++. +|. . +.++++|++|++++|.+...+
T Consensus 99 -~l~~l~~L~~L~L~~n~l~~--lp~---------------------------~--~~~l~~L~~L~Ls~n~l~~lp--- 143 (328)
T 4fcg_A 99 -QAFRLSHLQHMTIDAAGLME--LPD---------------------------T--MQQFAGLETLTLARNPLRALP--- 143 (328)
T ss_dssp -CGGGGTTCSEEEEESSCCCC--CCS---------------------------C--GGGGTTCSEEEEESCCCCCCC---
T ss_pred -hhhhCCCCCEEECCCCCccc--hhH---------------------------H--HhccCCCCEEECCCCccccCc---
Confidence 56777777777777776663 333 1 334444444444444444221
Q ss_pred hhhhCCCCCCcEEEccCccCCCcchHHhh---------hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC
Q 035693 150 CKAMSFLPNLQVLNLSNCLLSDPINHHLA---------NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG 220 (348)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 220 (348)
..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.. + .++..+..+++|++|++++|.+.
T Consensus 144 -~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 144 -ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-R-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp -GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-C-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred -HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-C-cchHhhcCCCCCCEEEccCCCCC-
Confidence 2344444555555554444443333322 355666666666532 2 34445556666666666666655
Q ss_pred cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC
Q 035693 221 KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN 300 (348)
Q Consensus 221 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 300 (348)
.+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 34445556666666666666555444445555666666666666666566666666666666777666666666666666
Q ss_pred CCCCCEEeCCCCccC
Q 035693 301 LTQLFHLDFSSNHFS 315 (348)
Q Consensus 301 ~~~L~~L~l~~n~l~ 315 (348)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 666666666655443
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.7e-29 Score=239.89 Aligned_cols=275 Identities=23% Similarity=0.229 Sum_probs=169.7
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.++++|++++| .+.+..|. .+.++++|++|++++|.+.+. .+. .+++|++|++++|.+. ...+..
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~-- 100 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLI------FMAETA-- 100 (606)
T ss_dssp TTCCEEECTTC-CCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCS------EECTTT--
T ss_pred CcCcEEEccCC-ccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCccc------ccChhh--
Confidence 57899999999 77765555 788999999999999988775 333 7889999999998763 233444
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+.++++|++|++++|++....+ ..+..+++|++|++++|.+.+.....+..+++|++|++++| .+....+..+..+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 176 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDF---IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSL 176 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGG---SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTT
T ss_pred hcccccccEeeccccCcccCCc---chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhh
Confidence 7778888888888888776544 34677778888888888777643233444777778887777 3344445666777
Q ss_pred CCCC--EEEccCCcCCCcccccccCC---------------------------------------------------CCc
Q 035693 206 LNLT--TLDLSQCDLHGKFPEKVLQV---------------------------------------------------PTL 232 (348)
Q Consensus 206 ~~L~--~L~l~~~~~~~~~~~~l~~~---------------------------------------------------~~L 232 (348)
++|+ .|++++|.+.+..+..+... .+|
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 7777 67777766553322221110 034
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693 233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312 (348)
Q Consensus 233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 312 (348)
+.|++++|.+.......|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 55555555544444444555556666666666555 45555555556666666666555544444555555555555555
Q ss_pred ccCCccCchhhhhhcCCCeeecccCccc
Q 035693 313 HFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 313 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
.+.+.++...+..+++|++|++++|.++
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred CcccccchhhhhccCcCCEEECCCCccc
Confidence 5544343332333344444444444443
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.5e-29 Score=240.06 Aligned_cols=294 Identities=18% Similarity=0.154 Sum_probs=203.5
Q ss_pred CCCcccCCCCCCCCCCcc----ccceEeCC-----------------CCCEEEEeCCCCccccccccCCcccccccccCE
Q 035693 22 STPPAKMSQWSESTDCCD----WNGVDCDE-----------------AGHVIGLDLSAEPILIGSLENASGLFSLQYLQS 80 (348)
Q Consensus 22 ~~~~~~~~~w~~~~~~~~----~~~~~c~~-----------------~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~ 80 (348)
|..|..++.|..+.+||. |..+.|.. ..+++.++++++ .+. .+|. ..+.++++|+.
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~-~l~-~lp~-~~~~~l~~L~~ 79 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMR-KLPA-ALLDSFRQVEL 79 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSC-EES-EECT-HHHHHCCCCSE
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCC-CCC-CcCH-HHHccCCCCcE
Confidence 456688999999888874 55444331 146788888888 664 4553 24678999999
Q ss_pred EeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCC
Q 035693 81 LNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLP 157 (348)
Q Consensus 81 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 157 (348)
|++++|.+++. .+ ..+++|++|++++|.+.. ..+.. +.++++|++|++++|.+...++ ..+..++
T Consensus 80 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~ 147 (597)
T 3oja_B 80 LNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRY------LPPHV--FQNVPLLTVLVLERNDLSSLPR---GIFHNTP 147 (597)
T ss_dssp EECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCC------CCTTT--TTTCTTCCEEECCSSCCCCCCT---TTTTTCT
T ss_pred EECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCC------CCHHH--HcCCCCCCEEEeeCCCCCCCCH---HHhccCC
Confidence 99999999886 33 289999999999998742 23333 7889999999999999987665 3468899
Q ss_pred CCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-----------------
Q 035693 158 NLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG----------------- 220 (348)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----------------- 220 (348)
+|++|++++|.+.+..+..+..+++|++|++++|.... .. +..+++|+.|++++|.+.+
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 99999999999998888889999999999999985432 21 3344555555554444331
Q ss_pred -cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCccccc
Q 035693 221 -KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMA 299 (348)
Q Consensus 221 -~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 299 (348)
.++.. ..++|+.|++++|.+.. .+.+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+ +|....
T Consensus 224 ~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 298 (597)
T 3oja_B 224 NVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298 (597)
T ss_dssp CEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred cccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccc
Confidence 11111 12467777777776543 3455567778888888888776667777777888888888888777 555556
Q ss_pred CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 300 NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 300 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
.+++|+.|++++|++.+ +|..+. .+++|++|+|++|.+++
T Consensus 299 ~l~~L~~L~Ls~N~l~~-i~~~~~-~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLH-VERNQP-QFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCTTCCEEECCSSCCCC-CGGGHH-HHTTCSEEECCSSCCCC
T ss_pred cCCCCcEEECCCCCCCc-cCcccc-cCCCCCEEECCCCCCCC
Confidence 67788888888888764 665543 34777788887777763
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=7.6e-29 Score=238.41 Aligned_cols=285 Identities=25% Similarity=0.252 Sum_probs=159.7
Q ss_pred CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcce----------
Q 035693 50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSW---------- 116 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~---------- 116 (348)
++++|+++++ .+.+..+. .+.++++|+.|++++|.++. +|. .+++|++|++++|.+......
T Consensus 255 ~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSN--TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTC-CCSSCCTT--TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecC-ccCccCHH--HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 5677777777 55543332 46667777777777776664 333 566677777776665321000
Q ss_pred --------eecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEc
Q 035693 117 --------RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRL 188 (348)
Q Consensus 117 --------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 188 (348)
...++. ..+.++++|++|++++|.+..... ....+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 330 L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 330 LSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDC-CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp EECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEE-STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred EECCCCCcccccch-hhhhccCcCCEEECCCCccccccC-cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 001110 124455555555555555544320 0123455566666666666655555555556666666666
Q ss_pred ccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCC---CCCCCCCCCcEEEcccCC
Q 035693 189 RDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSL---PHFPKNSSLRNLNLKNTS 265 (348)
Q Consensus 189 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~ls~n~ 265 (348)
++|.......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 66533222222335556666666666666655555556666666666666666543211 234445666666666666
Q ss_pred CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693 266 FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343 (348)
Q Consensus 266 ~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i 343 (348)
+++..|..+..+++|++|++++|++.+..|..+..++.| .|++++|++++..|.. +..+++|++|++++|++++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-LPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG-HHHHHTSSEEECTTCCEECSG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh-cccCCCCCEEeCCCCCccccC
Confidence 665555566666666666666666666666666666666 6666666666533332 333466777777777665543
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7.3e-29 Score=225.88 Aligned_cols=289 Identities=18% Similarity=0.156 Sum_probs=199.8
Q ss_pred cCCCCCCCCCCcc----ccceEeC-----------------CCCCEEEEeCCCCccccccccCCcccccccccCEEeCCC
Q 035693 27 KMSQWSESTDCCD----WNGVDCD-----------------EAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGF 85 (348)
Q Consensus 27 ~~~~w~~~~~~~~----~~~~~c~-----------------~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 85 (348)
.++.|..+.+||. |..+.++ ...+++.|+++++ .+. .+|. ..+.++++|+.|++++
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~-~l~-~l~~-~~~~~l~~L~~L~L~~ 78 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMR-KLPA-ALLDSFRQVELLNLND 78 (390)
T ss_dssp -----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESC-EES-EECT-HHHHHCCCCSEEECTT
T ss_pred CcCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCC-chh-hCCh-hHhcccccCcEEECCC
Confidence 3567777777774 4333222 0157888999888 654 4554 2468899999999999
Q ss_pred CCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEE
Q 035693 86 TLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLN 163 (348)
Q Consensus 86 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 163 (348)
|.+++... ...+++|++|++++|.+.. ..+.. +.++++|++|++++|++...+. ..+..+++|++|+
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------LPPHV--FQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLS 147 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCC------CCTTT--TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEE
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCc------CCHHH--hcCCCCCCEEECCCCccCcCCH---HHhcCCCCCcEEE
Confidence 99887621 1289999999999998642 23333 7889999999999999987665 3467889999999
Q ss_pred ccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC------------------ccccc
Q 035693 164 LSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG------------------KFPEK 225 (348)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------~~~~~ 225 (348)
+++|.+.+..+..+..+++|++|++++|.... . .+..+++|+++++++|.+.. ..+.
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence 99999988777788899999999999985432 2 13344445444444443321 1121
Q ss_pred ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693 226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305 (348)
Q Consensus 226 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 305 (348)
...++|+.|++++|.+.. .+.+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ ++.....+++|+
T Consensus 223 -~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 298 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 298 (390)
T ss_dssp -CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred -cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence 123567777777776543 3455667788888888888876667777778888888888888877 555556678888
Q ss_pred EEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
+|++++|++.+ +|..+.. +++|++|++++|.++
T Consensus 299 ~L~L~~n~l~~-~~~~~~~-l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 299 VLDLSHNHLLH-VERNQPQ-FDRLENLYLDHNSIV 331 (390)
T ss_dssp EEECCSSCCCC-CGGGHHH-HTTCSEEECCSSCCC
T ss_pred EEECCCCccee-cCccccc-cCcCCEEECCCCccc
Confidence 88888888765 5554433 377888888888876
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.3e-28 Score=213.98 Aligned_cols=279 Identities=20% Similarity=0.240 Sum_probs=183.3
Q ss_pred CccccceEeCCC----------CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEE
Q 035693 37 CCDWNGVDCDEA----------GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTL 103 (348)
Q Consensus 37 ~~~~~~~~c~~~----------~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L 103 (348)
.|.|+.+.|... .+++.|++++| .+.+..+. .+.++++|++|++++|.+++. .+. .+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN-KITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS-CCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCC-cCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEE
Confidence 356777776531 46777888877 66544333 567778888888887777765 233 67778888
Q ss_pred ecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhcc
Q 035693 104 DLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLL 181 (348)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 181 (348)
++++|.++ .++.. + .++|++|++++|.+....+ ..+..+++|++|++++|.+.. ..+..+..++
T Consensus 106 ~Ls~n~l~-------~l~~~--~--~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 106 YLSKNQLK-------ELPEK--M--PKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp ECCSSCCS-------BCCSS--C--CTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred ECCCCcCC-------ccChh--h--cccccEEECCCCcccccCH---hHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 88877653 23322 1 2577888888877776554 456777788888888777753 4556677777
Q ss_pred CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 261 (348)
+|++|++++|.... ++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++
T Consensus 172 ~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 172 KLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TCCEEECCSSCCCS--CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CcCEEECCCCcccc--CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 88888887774322 22222 267778888887777655667777778888888877765555556666777888888
Q ss_pred ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC------CCCCCEEeCCCCccCC-ccCchhhhhhcCCCeeec
Q 035693 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN------LTQLFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNL 334 (348)
Q Consensus 262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l 334 (348)
++|.++ .+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|++.. .++...+..+++++.++|
T Consensus 248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred CCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 888777 66667777777888888888777754444432 3567778888877753 233334444567777777
Q ss_pred ccCc
Q 035693 335 SSND 338 (348)
Q Consensus 335 ~~n~ 338 (348)
++|+
T Consensus 327 ~~N~ 330 (330)
T 1xku_A 327 GNYK 330 (330)
T ss_dssp ----
T ss_pred cccC
Confidence 7763
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.9e-29 Score=243.36 Aligned_cols=277 Identities=18% Similarity=0.268 Sum_probs=182.7
Q ss_pred CCEEEEeCCCCcccccc-----------------ccCCcccc--cccccCEEeCCCCCCCCCCCCC---CCCCCcEEecC
Q 035693 49 GHVIGLDLSAEPILIGS-----------------LENASGLF--SLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLS 106 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~-----------------~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~ 106 (348)
.++++|+|++| .+.+. +|. .++ ++++|++|++++|.+.+. +|. .+++|++|+++
T Consensus 206 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCC-ccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence 78999999999 78775 887 778 999999999999998886 776 78999999999
Q ss_pred CCC-CCCCcceee-cCCChhhhcC------CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhh
Q 035693 107 SRE-PISGFSWRL-EIPNFNFFQN------LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA 178 (348)
Q Consensus 107 ~~~-~~~~~~~~~-~~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 178 (348)
+|. ++ . .+|.. +.+ +++|++|++++|+++..+. ...+..+++|++|++++|.+.+.+| .+.
T Consensus 282 ~n~~l~------~~~lp~~--~~~L~~~~~l~~L~~L~L~~n~l~~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 282 CNRGIS------GEQLKDD--WQALADAPVGEKIQIIYIGYNNLKTFPV--ETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp TCTTSC------HHHHHHH--HHHHHHSGGGGTCCEEECCSSCCSSCCC--HHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCCc------cccchHH--HHhhhccccCCCCCEEECCCCcCCccCc--hhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 997 53 2 34433 443 4888999999888874332 0157788888888888888886677 777
Q ss_pred hccCCCEEEcccCCCCCCChhhhhhcCCC-CCEEEccCCcCCCcccccccCCC--CccEEEccCCCCCCCCCCCCC----
Q 035693 179 NLLSLSVIRLRDNHAVSCQVPEFVANLLN-LTTLDLSQCDLHGKFPEKVLQVP--TLETLDLSYNSLLQGSLPHFP---- 251 (348)
Q Consensus 179 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~---- 251 (348)
.+++|++|++++|... .++..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+....+..+.
T Consensus 351 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 7778888888777433 45566677777 777777777776 5666555443 666666666665443333333
Q ss_pred ---CCCCCcEEEcccCCCCCCCCcc-ccCCC-------------------------------CCCEEeecCCccCCCCcc
Q 035693 252 ---KNSSLRNLNLKNTSFSGKLPDS-IGNLE-------------------------------NLASVDVSSCNFTRPIPT 296 (348)
Q Consensus 252 ---~~~~L~~L~ls~n~~~~~~~~~-l~~~~-------------------------------~L~~L~L~~n~l~~~~~~ 296 (348)
..++|++|++++|.++ .+|.. +..++ +|+.|++++|.+.. +|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCG
T ss_pred ccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cCh
Confidence 3344455555555444 22221 22233 55556666665553 444
Q ss_pred ccc--CCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec------ccCcccccCCCCC
Q 035693 297 SMA--NLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL------SSNDLTGGISSNI 347 (348)
Q Consensus 297 ~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l------~~n~l~g~ip~~~ 347 (348)
.+. .+++|+.|++++|++.+ +|..+.. +++|++|+| ++|.+.+.+|..+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhc-CCCCCEEECCCCcccccCcccccChHHH
Confidence 444 56666666666666665 5554443 356666666 3455666666543
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.6e-28 Score=234.68 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=26.5
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP 172 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 172 (348)
+.++++|++|++++|.+.... ++..+.++++|++|++++|.+++.
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cCCCCCCCEEeCCCCccccee--chHhHhhcCCCCEEEccCCcceec
Confidence 555666666666666655421 113566677777777777665543
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.3e-28 Score=224.09 Aligned_cols=256 Identities=25% Similarity=0.279 Sum_probs=191.5
Q ss_pred cccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 76 QYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
++|+.|++++|.+++. .+. .+++|++|++++|.+.. ...+.. +.++++|++|++++|++....+ ..
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~-----~i~~~~--~~~l~~L~~L~Ls~n~l~~~~~---~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGL-----VIRNNT--FRGLSSLIILKLDYNQFLQLET---GA 98 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTC-----EECTTT--TTTCTTCCEEECTTCTTCEECT---TT
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccc-----eECccc--ccccccCCEEeCCCCccCccCh---hh
Confidence 7899999999999886 343 89999999999997631 111233 7889999999999999987765 56
Q ss_pred hCCCCCCcEEEccCccCCCcchHH--hhhccCCCEEEcccCCCCCCChhh-hhhcCCCCCEEEccCCcCCCcccccccC-
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHH--LANLLSLSVIRLRDNHAVSCQVPE-FVANLLNLTTLDLSQCDLHGKFPEKVLQ- 228 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~- 228 (348)
+..+++|++|++++|.+.+..+.. +..+++|++|++++|.. ....+. .+..+++|++|++++|.+.+..+..+..
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 889999999999999998766655 88999999999999954 444343 4889999999999999887654443322
Q ss_pred ---------------------------------CCCccEEEccCCCCC--------------------------------
Q 035693 229 ---------------------------------VPTLETLDLSYNSLL-------------------------------- 243 (348)
Q Consensus 229 ---------------------------------~~~L~~L~l~~~~l~-------------------------------- 243 (348)
+++|++|++++|.+.
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 245666666666432
Q ss_pred -------------------------------CCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 244 -------------------------------QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 244 -------------------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 2223335556777888888887776666677777888888888888877
Q ss_pred CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 293 PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 293 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
..+..+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++ +|.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSC-CCT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCcccc-CCH
Confidence 6677777788888888888888764454443 34788888888888874 444
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.8e-27 Score=211.98 Aligned_cols=260 Identities=20% Similarity=0.259 Sum_probs=143.0
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
+++++|++++| .+.+ ++ .+.++++|++|++++|.+++......+++|++|++++|.+... +. +..
T Consensus 66 ~~L~~L~l~~n-~i~~-~~---~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-------~~---~~~ 130 (347)
T 4fmz_A 66 TNLEYLNLNGN-QITD-IS---PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-------SP---LAN 130 (347)
T ss_dssp TTCCEEECCSS-CCCC-CG---GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-------GG---GTT
T ss_pred CCccEEEccCC-cccc-ch---hhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-------hh---hcc
Confidence 67888888888 6643 33 3777888888888888777753334788888888888875421 11 445
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCC--------------
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAV-------------- 194 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------- 194 (348)
+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|...
T Consensus 131 l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYF 204 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred CCceeEEECCCCCCccccc----chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCcccee
Confidence 5566666665554332221 24455555555555555444222 444455555555554221
Q ss_pred -------CCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC
Q 035693 195 -------SCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS 267 (348)
Q Consensus 195 -------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~ 267 (348)
....+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.. .+.+..+++|++|++++|.++
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccC
Confidence 11111 44555555555555555422 22 4555566666666655432 234445556666666666555
Q ss_pred CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 268 GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 268 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
+ + ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+ ...+++|++|++++|.|+
T Consensus 279 ~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 D-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred C-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 3 2 234555666666666666665555555566666666666666655333 223356666666666554
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.9e-28 Score=234.37 Aligned_cols=167 Identities=23% Similarity=0.196 Sum_probs=77.3
Q ss_pred HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc-ccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693 175 HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP-EKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253 (348)
Q Consensus 175 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 253 (348)
..+..+++|++|++++|... ..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.......+..+
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEE--EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhccCCcccEeECCCCccc--cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 33444444444444444211 112233344444444444444433322 234444555555555554433333344444
Q ss_pred CCCcEEEcccCCCCC-CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCee
Q 035693 254 SSLRNLNLKNTSFSG-KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYL 332 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 332 (348)
++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. .+++|++|
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 526 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTL 526 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-TCTTCCEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc-CCCcCCEE
Confidence 555555555555443 1344445555555555555555554444555555555555555555543333322 22455555
Q ss_pred ecccCcccccCCC
Q 035693 333 NLSSNDLTGGISS 345 (348)
Q Consensus 333 ~l~~n~l~g~ip~ 345 (348)
++++|+++ .+|.
T Consensus 527 ~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 527 DCSFNRIE-TSKG 538 (606)
T ss_dssp ECTTSCCC-CEES
T ss_pred ECCCCcCc-ccCH
Confidence 55555554 4443
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.1e-28 Score=215.54 Aligned_cols=276 Identities=18% Similarity=0.215 Sum_probs=147.2
Q ss_pred ccccceEeCCC----------CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEe
Q 035693 38 CDWNGVDCDEA----------GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLD 104 (348)
Q Consensus 38 ~~~~~~~c~~~----------~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~ 104 (348)
|.|..+.|... +++++|++++| .+.+..+. .+.++++|+.|++++|.+++. .+. .+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN-DISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC-cCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEE
Confidence 56666666421 35666666666 55433332 456666666666666666554 222 556666666
Q ss_pred cCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC--cchHHhhhccC
Q 035693 105 LSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD--PINHHLANLLS 182 (348)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 182 (348)
+++|.+. .+|.. +. ++|++|++++|++....+ ..+..+++|++|++++|.+.. ..+..+..+ +
T Consensus 109 L~~n~l~-------~l~~~--~~--~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 109 ISKNHLV-------EIPPN--LP--SSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp CCSSCCC-------SCCSS--CC--TTCCEEECCSSCCCCCCS---GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred CCCCcCC-------ccCcc--cc--ccCCEEECCCCccCccCH---hHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 6666543 22222 11 466666666666655443 335556666666666666542 334444444 6
Q ss_pred CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262 (348)
Q Consensus 183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls 262 (348)
|++|++++|.... ++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 174 L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 174 LNYLRISEAKLTG--IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CSCCBCCSSBCSS--CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred cCEEECcCCCCCc--cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 6666666653221 22221 1456666666666654444555666666666666666544444445556666666666
Q ss_pred cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC------CCCCCEEeCCCCccCC-ccCchhhhhhcCCCeeecc
Q 035693 263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN------LTQLFHLDFSSNHFSD-PIPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~ 335 (348)
+|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.+++++|++.. .++...+..+++|+.++++
T Consensus 250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 66665 55555666666666666666666543333332 2456666666666541 1233333444566666666
Q ss_pred cC
Q 035693 336 SN 337 (348)
Q Consensus 336 ~n 337 (348)
+|
T Consensus 329 ~n 330 (332)
T 2ft3_A 329 NY 330 (332)
T ss_dssp --
T ss_pred cc
Confidence 55
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=229.34 Aligned_cols=84 Identities=23% Similarity=0.099 Sum_probs=61.8
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
.++++|++++| .+.+..|. .+.++++|++|++++|.++..... .+++|++|++++|.+.. ..+|.. +.+
T Consensus 45 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~-----~~~p~~--~~~ 113 (520)
T 2z7x_B 45 SKLRILIISHN-RIQYLDIS--VFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA-----LPICKE--FGN 113 (520)
T ss_dssp TTCCEEECCSS-CCCEEEGG--GGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS-----CCCCGG--GGG
T ss_pred ccccEEecCCC-ccCCcChH--HhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccc-----ccchhh--hcc
Confidence 67888999988 77766665 788888999999988888864222 78888899998887642 233433 677
Q ss_pred CCCCcEEEccCcCCC
Q 035693 129 LTELRELYLDNVDLS 143 (348)
Q Consensus 129 l~~L~~L~l~~~~~~ 143 (348)
+++|++|++++|.+.
T Consensus 114 l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLE 128 (520)
T ss_dssp CTTCCEEEEEESSCC
T ss_pred CCcceEEEecCcccc
Confidence 777777777777664
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=6.1e-29 Score=219.54 Aligned_cols=236 Identities=23% Similarity=0.311 Sum_probs=201.7
Q ss_pred CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccC-cCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH
Q 035693 98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDN-VDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH 176 (348)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 176 (348)
.++++|++++|.+.. ...+|.. +.++++|++|++++ |.+.+..+ ..+..+++|++|++++|.+.+.+|..
T Consensus 50 ~~l~~L~L~~~~l~~----~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK----PYPIPSS--LANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSS----CEECCGG--GGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccC----CcccChh--HhCCCCCCeeeCCCCCcccccCC---hhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 466777777776531 0145554 88999999999994 88876555 56888999999999999999889999
Q ss_pred hhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC-CccEEEccCCCCCCCCCCCCCCCCC
Q 035693 177 LANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP-TLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 177 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
+..+++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....+..+..+.
T Consensus 121 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 999999999999999 45556788899999999999999999888999999998 999999999988666666666665
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 335 (348)
|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++.+.+|..+.. +++|++|+++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls 276 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS 276 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECc
Confidence 99999999999888888899999999999999999985555 778899999999999999878877654 4899999999
Q ss_pred cCcccccCCCC
Q 035693 336 SNDLTGGISSN 346 (348)
Q Consensus 336 ~n~l~g~ip~~ 346 (348)
+|+++|.+|..
T Consensus 277 ~N~l~~~ip~~ 287 (313)
T 1ogq_A 277 FNNLCGEIPQG 287 (313)
T ss_dssp SSEEEEECCCS
T ss_pred CCcccccCCCC
Confidence 99999999974
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=227.74 Aligned_cols=141 Identities=26% Similarity=0.284 Sum_probs=82.5
Q ss_pred cCCCCCEEEccCCcCCCccc-ccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-CCCCccccCCCCCC
Q 035693 204 NLLNLTTLDLSQCDLHGKFP-EKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-GKLPDSIGNLENLA 281 (348)
Q Consensus 204 ~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~~~~L~ 281 (348)
.+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.......+..+++|++|++++|.+. +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 34444444444444332222 23444555555555555544444444555666666666666654 34556666667777
Q ss_pred EEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 282 SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
+|++++|.+.+..|..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++..|.
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH-HHhhcccCCcEEEecCCcccCCCcc
Confidence 77777777776556666677777777777777766333 3333446777777777777776664
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-27 Score=227.92 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=88.1
Q ss_pred hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC--CCCCCCCCCCcEEEcccCCCCCCCCc-cccCCCC
Q 035693 203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS--LPHFPKNSSLRNLNLKNTSFSGKLPD-SIGNLEN 279 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~ls~n~~~~~~~~-~l~~~~~ 279 (348)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.... +..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 45667777777777777666777777777777777777664422 13456677777777777777653443 3555666
Q ss_pred CCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 280 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
|++|++++|.+.+..+..+. ++|+.|++++|++.. +|..+. .+++|++|++++|+++ .+|..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSSCCC-CCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCCCCC-CCCHH
Confidence 77777777766654444332 466666666666653 555544 3366666666666666 55543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.8e-27 Score=231.87 Aligned_cols=275 Identities=24% Similarity=0.258 Sum_probs=138.0
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.++++|++++| .+.+..+. .+.++++|++|++++|.+++. .+. .+++|++|++++|.+. .++. ..
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-------QLSD-KT 92 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred CCCcEEECCCC-CCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-------ccCh-hh
Confidence 45677777776 55543332 466666777777766666654 333 5666666666666543 1221 12
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh--
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA-- 203 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-- 203 (348)
+.++++|++|++++|++....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++...+..+.
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 168 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF 168 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred hccCCCCCEEECCCCccCccCh---hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence 4556666666666666655443 345556666666666666555445555555666666666552 2222233222
Q ss_pred cCCCCCEEEccCCcCCCccc---------------------------------------------------ccccCCC--
Q 035693 204 NLLNLTTLDLSQCDLHGKFP---------------------------------------------------EKVLQVP-- 230 (348)
Q Consensus 204 ~l~~L~~L~l~~~~~~~~~~---------------------------------------------------~~l~~~~-- 230 (348)
.+++|++|++++|.+.+..+ ..+..++
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence 23455555555555443333 2333222
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC-----CCcc----cccCC
Q 035693 231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR-----PIPT----SMANL 301 (348)
Q Consensus 231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~----~l~~~ 301 (348)
+|+.|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.... .+|. .+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 24444444444433333334444445555555444444344444444455555554433221 1111 33445
Q ss_pred CCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 302 TQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 302 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
++|+.|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 329 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSC
T ss_pred CCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchh
Confidence 556666666666555222 22333456666666666543
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.5e-26 Score=207.28 Aligned_cols=265 Identities=25% Similarity=0.318 Sum_probs=194.8
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
+++++|+++++ .+. .++ .+..+++|++|++++|.+++......+++|++|++++|.++. + ..+.+
T Consensus 44 ~~L~~L~l~~~-~i~-~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-------~---~~~~~ 108 (347)
T 4fmz_A 44 ESITKLVVAGE-KVA-SIQ---GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-------I---SALQN 108 (347)
T ss_dssp TTCSEEECCSS-CCC-CCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------C---GGGTT
T ss_pred ccccEEEEeCC-ccc-cch---hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-------c---hHHcC
Confidence 68999999999 664 344 588999999999999999886444589999999999998642 2 23789
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 208 (348)
+++|++|++++|.+.+... +..+++|++|++++|......+ .+..+++|++|++++|.... ..+ +..+++|
T Consensus 109 l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L 179 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP--IANLTDL 179 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTC
T ss_pred CCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh--hccCCCC
Confidence 9999999999999987543 7889999999999996655344 48899999999999995432 222 6788888
Q ss_pred CEEEccCCcCCCccc--------------------ccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC
Q 035693 209 TTLDLSQCDLHGKFP--------------------EKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG 268 (348)
Q Consensus 209 ~~L~l~~~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~ 268 (348)
++|++++|.+.+..+ ..+..+++|++|++++|.+.... .+..+++|++|++++|.+++
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC
Confidence 888888887763221 01344556666666666543322 25556777777777777763
Q ss_pred CCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693 269 KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 269 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip 344 (348)
+ ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..+ ..+++|++|++++|++++..|
T Consensus 258 -~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 258 -I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp -C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG
T ss_pred -C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC
Confidence 3 3466777888888888877763 346677888888888888876444433 344788888888888876554
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=238.63 Aligned_cols=285 Identities=23% Similarity=0.192 Sum_probs=172.9
Q ss_pred ccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC-C---CCCCCCcEEecCCCCCCCCcc
Q 035693 40 WNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM-P---SSLPRLVTLDLSSREPISGFS 115 (348)
Q Consensus 40 ~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~ 115 (348)
|.++.+ -.+++++|+|++| .+.+..|. .+.++++|+.|++++|..... + + ..+++|++|++++|.+.
T Consensus 16 L~~vP~-lp~~l~~LdLs~N-~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~---- 86 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSFN-YIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY---- 86 (844)
T ss_dssp SSCCCS-SCTTCCEEEEESC-CCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC----
T ss_pred CCCCCC-CCCCcCEEECCCC-cCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc----
Confidence 444443 2256667777776 55544444 566666666666666643322 2 1 25666666666666552
Q ss_pred eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCC
Q 035693 116 WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAV 194 (348)
Q Consensus 116 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 194 (348)
...|.. +.++++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|..
T Consensus 87 --~~~p~~--~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i- 160 (844)
T 3j0a_A 87 --FLHPDA--FQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI- 160 (844)
T ss_dssp --EECTTS--SCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-
T ss_pred --ccCHhH--ccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC-
Confidence 122333 55666666666666665542221 0124556666666666666555322 3455666666666666532
Q ss_pred CCChhhhhh--------------------------cCC------CCCEEEccCCcCCCccccccc---------------
Q 035693 195 SCQVPEFVA--------------------------NLL------NLTTLDLSQCDLHGKFPEKVL--------------- 227 (348)
Q Consensus 195 ~~~~~~~l~--------------------------~l~------~L~~L~l~~~~~~~~~~~~l~--------------- 227 (348)
....+..+. .++ .|++|++++|.+.+..+..+.
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 222222222 222 266777776654432222111
Q ss_pred ---------------------C--CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693 228 ---------------------Q--VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284 (348)
Q Consensus 228 ---------------------~--~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~ 284 (348)
. .++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 1 24677777777776555556667778888888888888766677778888888888
Q ss_pred ecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
+++|.+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|.++
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCC
Confidence 88888888777788888888888888888866 44333445578888888888886
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-27 Score=227.49 Aligned_cols=275 Identities=18% Similarity=0.165 Sum_probs=168.0
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
+++++|++++| .+.+..+. .+.++++|++|++++|.+++. .+. .+++|++|++++|.++ .+|..
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~-- 118 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-------NISCC-- 118 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-------EECSC--
T ss_pred CCcCEEECCCC-CccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-------ccCcc--
Confidence 57888888888 77655444 778888888888888888775 333 6788888888888764 23332
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCC--CEEEcccCCCC-CCChhhhh
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL--SVIRLRDNHAV-SCQVPEFV 202 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~-~~~~~~~l 202 (348)
.+++|++|++++|++..... +..+.++++|++|++++|.+... .+..+++| ++|++++|... ....+..+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred --ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 67788888888888776431 13567778888888888877653 33344444 77777776430 11111111
Q ss_pred hc------------------------------------------------------------------------------
Q 035693 203 AN------------------------------------------------------------------------------ 204 (348)
Q Consensus 203 ~~------------------------------------------------------------------------------ 204 (348)
..
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 11
Q ss_pred ---CCCCCEEEccCCcCCCcccccc-----------------------------------------------------cC
Q 035693 205 ---LLNLTTLDLSQCDLHGKFPEKV-----------------------------------------------------LQ 228 (348)
Q Consensus 205 ---l~~L~~L~l~~~~~~~~~~~~l-----------------------------------------------------~~ 228 (348)
.++|++|++++|.+.+.+|..+ ..
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 1255666666666554444433 34
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCC--CCccccCCCCCCEEeecCCccCCCCc-ccccCCCCCC
Q 035693 229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGK--LPDSIGNLENLASVDVSSCNFTRPIP-TSMANLTQLF 305 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~ 305 (348)
+++|++|++++|.+....+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+.+.+| ..+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 45666666666665544445555566666666666666531 12345556666666666666665333 2355566666
Q ss_pred EEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~ 347 (348)
+|++++|++.+.++..+. ++|++|++++|.++ .||.++
T Consensus 432 ~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp EEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTT
T ss_pred EEECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChhh
Confidence 666666666554433221 46777777777776 666654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-27 Score=217.45 Aligned_cols=267 Identities=24% Similarity=0.256 Sum_probs=206.9
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
++|++|+++++ .+.+..+. .+..+++|++|++++|.+++. .+. .+++|++|++++|.+. .++. ..
T Consensus 69 ~~L~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~ 136 (390)
T 3o6n_A 69 RQVELLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-------SLPR-GI 136 (390)
T ss_dssp CCCSEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred ccCcEEECCCC-cccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-------cCCH-HH
Confidence 68999999999 77655444 788999999999999999886 333 7899999999999864 2332 22
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhh----
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEF---- 201 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 201 (348)
+.++++|++|++++|++....+ ..+..+++|++|++++|.+++.. +..+++|+.|++++|.......+..
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L 210 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEEL 210 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT---TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEE
T ss_pred hcCCCCCcEEECCCCccCccCh---hhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEE
Confidence 5789999999999999987665 46788999999999999988742 3445555555555542211000000
Q ss_pred -----------hhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCC
Q 035693 202 -----------VANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL 270 (348)
Q Consensus 202 -----------l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 270 (348)
....++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|++++|.++ .+
T Consensus 211 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 287 (390)
T 3o6n_A 211 DASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287 (390)
T ss_dssp ECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EE
T ss_pred ECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-cc
Confidence 11245799999999998743 56788999999999999887666677888999999999999998 45
Q ss_pred CccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 271 PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 271 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
+..+..+++|++|++++|++.. +|..+..+++|+.|++++|++.+ ++ ...+++|++|++++|++++
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce-eC---chhhccCCEEEcCCCCccc
Confidence 6666778999999999999987 67777888999999999999976 44 2344889999999998864
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=237.84 Aligned_cols=278 Identities=20% Similarity=0.228 Sum_probs=212.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.+|++|+|++| ...+.++. ..+.++++|++|++++|.+.+. .|. .+++|++|++++|.+.. .++....
T Consensus 48 ~~L~~LdLs~n-~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~ 118 (844)
T 3j0a_A 48 EQLQLLELGSQ-YTPLTIDK-EAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSD------AVLKDGY 118 (844)
T ss_dssp CSCSEEEECTT-CCCCEECT-TTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSS------CCSTTCC
T ss_pred ccCeEEeCCCC-CCccccCH-HHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCc------ccccCcc
Confidence 67888999888 55555532 2788888999999998888775 343 78889999998887642 2333334
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhc--cC---------------------
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANL--LS--------------------- 182 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~--------------------- 182 (348)
+.++++|++|++++|.+....+. ..+.++++|++|++++|.+.+..+..+..+ ++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred ccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 67888888888888888765431 357788888888888888776555544433 33
Q ss_pred ---------CCEEEcccCCCCCCChhhh------------------------------------hhc--CCCCCEEEccC
Q 035693 183 ---------LSVIRLRDNHAVSCQVPEF------------------------------------VAN--LLNLTTLDLSQ 215 (348)
Q Consensus 183 ---------L~~L~l~~~~~~~~~~~~~------------------------------------l~~--l~~L~~L~l~~ 215 (348)
|+.|++++|.. ....+.. +.. .++|++|++++
T Consensus 197 ~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGNGW-TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSCTTTTCCBSEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred cCCccccCceeEEecCCCcC-chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 56666666522 1111111 111 26799999999
Q ss_pred CcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc
Q 035693 216 CDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295 (348)
Q Consensus 216 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 295 (348)
|.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 99987777888999999999999999877777788889999999999999987778899999999999999999998777
Q ss_pred ccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 296 TSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 296 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
..+..+++|+.|++++|.+.+ ++. +++|+.|++++|.++ .+|.
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~-i~~-----~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTT-IHF-----IPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCC-CSS-----CCSCSEEEEESCCCC-CCCC
T ss_pred hhhcCCCCCCEEECCCCCCCc-ccC-----CCCcchhccCCCCcc-cccc
Confidence 788999999999999999976 443 377888888888886 5654
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=225.28 Aligned_cols=275 Identities=20% Similarity=0.202 Sum_probs=184.8
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
+++++|++++| .+.+..|. .+.++++|++|++++|.+++. .+. .+++|++|++++|.++ .+|..
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-------KISCH-- 87 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-------EEECC--
T ss_pred ccccEEECCCC-cccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-------ecCcc--
Confidence 68999999999 77765554 788999999999999999886 333 8999999999999874 23332
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCC--CEEEcccCCCC-CCChhhhh
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSL--SVIRLRDNHAV-SCQVPEFV 202 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~-~~~~~~~l 202 (348)
.+++|++|++++|.+..... +..+..+++|++|++++|.+.+ ..+..+++| ++|++++|... ....+..+
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred --ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc
Confidence 68999999999999986421 1468889999999999999876 356677788 99999998541 11122222
Q ss_pred hc------------------------------------------------------------------------------
Q 035693 203 AN------------------------------------------------------------------------------ 204 (348)
Q Consensus 203 ~~------------------------------------------------------------------------------ 204 (348)
..
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 11
Q ss_pred -----CCCCCEEEccCCcCCCcccccc-----cCCCCccEEEccCCCC--------------------------CCCCCC
Q 035693 205 -----LLNLTTLDLSQCDLHGKFPEKV-----LQVPTLETLDLSYNSL--------------------------LQGSLP 248 (348)
Q Consensus 205 -----l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l--------------------------~~~~~~ 248 (348)
.++|++|++++|.+.+.+|..+ ..++.|+.+++++|.+ ... .
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~--~ 318 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM--L 318 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC--C
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc--c
Confidence 1267777777777666666655 4444444444443332 111 1
Q ss_pred CCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC--CCcccccCCCCCCEEeCCCCccCCccCchhhhhh
Q 035693 249 HFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR--PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326 (348)
Q Consensus 249 ~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 326 (348)
.+..+++|++|++++|.+++..|..++.+++|++|++++|.+.+ .+|..+..+++|+.|++++|++.+.+|...+..+
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 11345667777777777766566666667777777777777765 3445566667777777777777665554433334
Q ss_pred cCCCeeecccCcccccCCC
Q 035693 327 RNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 327 ~~L~~L~l~~n~l~g~ip~ 345 (348)
++|++|++++|.+++.+|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTCCEEECCSSCCCGGGGG
T ss_pred ccCCEEECcCCCCCcchhh
Confidence 5566666666666555543
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=218.93 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=148.1
Q ss_pred CCCCCCCCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEec
Q 035693 28 MSQWSESTDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDL 105 (348)
Q Consensus 28 ~~~w~~~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l 105 (348)
...|......|.|.++ |+ .+++ .+. .+|. .+ .++|+.|++++|.+++... ...+++|++|++
T Consensus 20 ~~~~~~~~~~C~~~~~-c~---------~~~~-~l~-~iP~--~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 83 (353)
T 2z80_A 20 EESSNQASLSCDRNGI-CK---------GSSG-SLN-SIPS--GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVL 83 (353)
T ss_dssp -------CCEECTTSE-EE---------CCST-TCS-SCCT--TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCCCccCCCCCCCeE-ee---------CCCC-Ccc-cccc--cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEEC
Confidence 3456666777888776 43 2222 222 3332 22 1356666666666555411 115566666666
Q ss_pred CCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCC
Q 035693 106 SSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLS 184 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 184 (348)
++|.++ ...+.. +.++++|++|++++|+++.... ..+..+++|++|++++|.+..... ..+..+++|+
T Consensus 84 ~~n~l~------~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 84 TSNGIN------TIEEDS--FSSLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTSCCC------EECTTT--TTTCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCccC------ccCHhh--cCCCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 666542 112222 5556666666666666655443 235556666666666666654222 2455566666
Q ss_pred EEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC
Q 035693 185 VIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT 264 (348)
Q Consensus 185 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n 264 (348)
+|++++|.......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 66666653333333445556666666666666665555555666666666666666542211111222456666666666
Q ss_pred CCCCCCCccc---cCCCCCCEEeecCCccCC----CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 265 SFSGKLPDSI---GNLENLASVDVSSCNFTR----PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 265 ~~~~~~~~~l---~~~~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
.+++..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|++.. +|...+..+++|++|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCC
Confidence 6654322222 123455566666655554 244455556666666666666653 55544444456666666666
Q ss_pred cccccC
Q 035693 338 DLTGGI 343 (348)
Q Consensus 338 ~l~g~i 343 (348)
++++..
T Consensus 312 ~~~~~~ 317 (353)
T 2z80_A 312 PWDCSC 317 (353)
T ss_dssp CBCCCH
T ss_pred CccCcC
Confidence 665543
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.7e-28 Score=236.29 Aligned_cols=275 Identities=20% Similarity=0.248 Sum_probs=196.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCC-CCC-CCCCC----------CCCCCcEEecCCCCCCCCcce
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTL-FYG-FPMPS----------SLPRLVTLDLSSREPISGFSW 116 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~----------~~~~L~~L~l~~~~~~~~~~~ 116 (348)
.+|++|+|++| .+.+.+|. .+.++++|+.|++++|. +++ . +|. .+++|++|++++|.+.
T Consensus 491 ~~L~~L~Ls~N-~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----- 561 (876)
T 4ecn_A 491 KDLTDVELYNC-PNMTQLPD--FLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE----- 561 (876)
T ss_dssp TTCCEEEEESC-TTCCSCCG--GGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-----
T ss_pred CCCCEEECcCC-CCCccChH--HHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-----
Confidence 67889999988 77778886 78889999999999887 765 2 332 4568888888888763
Q ss_pred eecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccC-CCEEEcccCCCCC
Q 035693 117 RLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLS-LSVIRLRDNHAVS 195 (348)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 195 (348)
.+|....+.++++|+.|++++|++...+ .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|...
T Consensus 562 --~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 562 --EFPASASLQKMVKLGLLDCVHNKVRHLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp --BCCCHHHHTTCTTCCEEECTTSCCCBCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred --ccCChhhhhcCCCCCEEECCCCCcccch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 5665123778888888888888876322 4677777888888888777 46666777777 777777777432
Q ss_pred CChhhhhhcC-------------------------------CCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCC
Q 035693 196 CQVPEFVANL-------------------------------LNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLL 243 (348)
Q Consensus 196 ~~~~~~l~~l-------------------------------~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~ 243 (348)
.++..+... ++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 233333222 24555555555555 344433 35677888888888765
Q ss_pred CCCCCCCCC-------CCCCcEEEcccCCCCCCCCcccc--CCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC---
Q 035693 244 QGSLPHFPK-------NSSLRNLNLKNTSFSGKLPDSIG--NLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS--- 311 (348)
Q Consensus 244 ~~~~~~~~~-------~~~L~~L~ls~n~~~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~--- 311 (348)
......+.. +++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence 322222222 227889999999888 6777776 78899999999999988 787788889999999876
Q ss_pred ---CccCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693 312 ---NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 312 ---n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~ 347 (348)
|.+.+.+|..+.. +++|++|+|++|++ +.||..+
T Consensus 789 ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 789 AEGNRILRQWPTGITT-CPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp TTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCC
T ss_pred cccccccccChHHHhc-CCCCCEEECCCCCC-CccCHhh
Confidence 6777777766554 48899999999999 7888865
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.2e-26 Score=206.38 Aligned_cols=266 Identities=19% Similarity=0.201 Sum_probs=217.3
Q ss_pred CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhc
Q 035693 50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ 127 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 127 (348)
+++.++++++ .+. .+|. .+ .++|+.|++++|.+++... ...+++|++|++++|.+.. ..+.. +.
T Consensus 32 ~l~~l~~~~~-~l~-~lp~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~--~~ 97 (330)
T 1xku_A 32 HLRVVQCSDL-GLE-KVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------ISPGA--FA 97 (330)
T ss_dssp ETTEEECTTS-CCC-SCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC------BCTTT--TT
T ss_pred CCeEEEecCC-Ccc-ccCc--cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe------eCHHH--hc
Confidence 4688999988 654 4554 33 3789999999999988622 1289999999999998742 33444 88
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCC-CChhhhhhcCC
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS-CQVPEFVANLL 206 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~ 206 (348)
++++|++|++++|+++..+.. + .++|++|++++|.+....+..+..+++|++|++++|.... +..+..+..++
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEK----M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSS----C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCCCEEECCCCcCCccChh----h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 999999999999999865532 2 2799999999999999888889999999999999995432 24566788999
Q ss_pred CCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeec
Q 035693 207 NLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVS 286 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~ 286 (348)
+|++|++++|.+. .+|..+. ++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 9999999999987 4565543 799999999999877667778889999999999999986666688899999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh------hhcCCCeeecccCccc
Q 035693 287 SCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY------MSRNLNYLNLSSNDLT 340 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~L~~L~l~~n~l~ 340 (348)
+|.+.. +|..+..+++|++|++++|++++ ++...+. ..+.++.|++++|++.
T Consensus 249 ~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 249 NNKLVK-VPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCSS-CCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcCcc-CChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCccc
Confidence 999996 78888999999999999999987 4433221 1267899999999885
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=8.2e-27 Score=222.58 Aligned_cols=120 Identities=24% Similarity=0.268 Sum_probs=90.5
Q ss_pred ccCCCCccEEEccCCCCCCCCC-CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC-CCCcccccCCCC
Q 035693 226 VLQVPTLETLDLSYNSLLQGSL-PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT-RPIPTSMANLTQ 303 (348)
Q Consensus 226 l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~ 303 (348)
+..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4455566666666665443322 34566788899999998888777778888899999999999987 457788888999
Q ss_pred CCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 304 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
|+.|++++|++.+..|..+. .+++|++|++++|.+++..|..
T Consensus 472 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTT
T ss_pred CCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHH
Confidence 99999999999875565544 4588999999999998665543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.5e-26 Score=225.24 Aligned_cols=290 Identities=22% Similarity=0.147 Sum_probs=187.3
Q ss_pred CCEEEEeCCCCccccc-----cccC--CcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCc----
Q 035693 49 GHVIGLDLSAEPILIG-----SLEN--ASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGF---- 114 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~-----~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~---- 114 (348)
.++++|+++++ ...+ .+|. ...+..+++|+.|++++|.+++. .+. .+++|++|++++|.+....
T Consensus 296 ~~L~~L~L~~~-~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~ 373 (680)
T 1ziw_A 296 FNVRYLNLKRS-FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNE 373 (680)
T ss_dssp TTCCEEECTTC-BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred CCccEEeccch-hhhcccccccccccChhhcccCCCCCEEECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchh
Confidence 56777777765 3222 1121 01355667777777777766664 222 5666666666665421100
Q ss_pred ------------------ceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHH
Q 035693 115 ------------------SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHH 176 (348)
Q Consensus 115 ------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 176 (348)
......+. .+..+++|+.|++++|.+.+..+. ..+..+++|++|++++|.+.+..+..
T Consensus 374 ~f~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 374 TFVSLAHSPLHILNLTKNKISKIESD--AFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp TTGGGTTSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred hhcccccCcCceEECCCCCCCeEChh--hhhCCCCCCEEeCCCCcCccccCc--ccccCcccccEEecCCCCcceeChhh
Confidence 00111222 256667777777777766542221 34566777777777777766656666
Q ss_pred hhhccCCCEEEcccCCCCC-CChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCC--------C
Q 035693 177 LANLLSLSVIRLRDNHAVS-CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGS--------L 247 (348)
Q Consensus 177 ~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--------~ 247 (348)
+..+++|+.|++++|.... ...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.... .
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 6777777777777764321 345666778888888888888887655566778888888888888765421 1
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhc
Q 035693 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327 (348)
Q Consensus 248 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 327 (348)
..+..+++|++|++++|++....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+...++
T Consensus 530 ~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence 23566788888888888887433346778888888888888888766666677888888888888887743333332457
Q ss_pred CCCeeecccCcccccCC
Q 035693 328 NLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 328 ~L~~L~l~~n~l~g~ip 344 (348)
+|++|++++|++...-+
T Consensus 610 ~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 610 NLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCSEEECTTCCCCBCCC
T ss_pred ccCEEEccCCCcccCCc
Confidence 88888888888775543
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-27 Score=208.87 Aligned_cols=260 Identities=19% Similarity=0.160 Sum_probs=202.3
Q ss_pred cccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693 76 QYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM 153 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 153 (348)
++|+.|++++|.++.... ...+++|++|++++|.+... ...+.. +..+++|++|++++|.+.... ..+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~~~~~~L~~L~Ls~n~i~~l~----~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK----GCCSQS--DFGTTSLKYLDLSFNGVITMS----SNF 97 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE----EEEEHH--HHSCSCCCEEECCSCSEEEEE----EEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc----cCcccc--cccccccCEEECCCCccccCh----hhc
Confidence 578899999888876421 12788999999998876421 111222 567889999999999887544 347
Q ss_pred CCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-cccccccCCCC
Q 035693 154 SFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-KFPEKVLQVPT 231 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~ 231 (348)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|. .....+..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 788999999999998877543 577888999999999984 444566678888999999999998875 57778889999
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCC-CCCEEeCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT-QLFHLDFS 310 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~l~ 310 (348)
|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 99999999988776677788899999999999999866666788889999999999999998888888875 99999999
Q ss_pred CCccCCccCc-hhhhhhcCCCeeecccCcccccCCCC
Q 035693 311 SNHFSDPIPT-LRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 311 ~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+|++.+.... .+.......+.+.+..+.+....|+.
T Consensus 257 ~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred CCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 9999875332 23334455666666667776665553
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.7e-27 Score=207.90 Aligned_cols=265 Identities=18% Similarity=0.190 Sum_probs=215.2
Q ss_pred CEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 50 HVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
+++.++++++ .+. .+|. .+ .++|+.|++++|.+++. .+ ..+++|++|++++|.++ ...+.. +
T Consensus 34 ~l~~l~~~~~-~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~------~~~~~~--~ 98 (332)
T 2ft3_A 34 HLRVVQCSDL-GLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKIS------KIHEKA--F 98 (332)
T ss_dssp ETTEEECCSS-CCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC------EECGGG--S
T ss_pred cCCEEECCCC-Ccc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccC------ccCHhH--h
Confidence 4788999998 664 5664 33 47999999999999876 23 28999999999999874 223433 8
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCC-CChhhhhhcC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVS-CQVPEFVANL 205 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l 205 (348)
.++++|++|++++|++...+.. +. ++|++|++++|.+....+..+..+++|++|++++|.... ...+..+..+
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~----~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPN----LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSS----CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred hCcCCCCEEECCCCcCCccCcc----cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 8999999999999999866542 22 799999999999998767778999999999999995432 2345566666
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L 285 (348)
+|++|++++|.+. .+|..+. ++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 173 -~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 173 -KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp -CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred -ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 8999999999988 4565543 78999999999987777778888999999999999999777778899999999999
Q ss_pred cCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhh-----hcCCCeeecccCccc
Q 035693 286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYM-----SRNLNYLNLSSNDLT 340 (348)
Q Consensus 286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~l~~n~l~ 340 (348)
++|.+.. +|..+..+++|+.|++++|++++..+..+... .+.|+.|++++|+++
T Consensus 249 ~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 249 DNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9999996 78888999999999999999987333332221 267899999999886
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.2e-27 Score=225.60 Aligned_cols=129 Identities=26% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
+++++|++++| .+.+..|. .+.++++|++|++++|.+++. .+. .+++|++|++++|.+.. ..+ ..
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~------~~~--~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS------LSS--SW 93 (549)
T ss_dssp TTCCEEECCSS-CCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS------CCH--HH
T ss_pred CCccEEECcCC-ccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc------cCH--HH
Confidence 47888888888 77655554 678888888888888888775 322 77888888888887642 112 22
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcc-hHHhhhccCCCEEEcccC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPI-NHHLANLLSLSVIRLRDN 191 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 191 (348)
+.++++|++|++++|.+..... ...+.++++|++|++++|.+.+.+ +..+..+++|++|++++|
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred hccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 6677777888887777764321 124566677777777777633323 345666666777777666
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.8e-27 Score=224.17 Aligned_cols=268 Identities=24% Similarity=0.264 Sum_probs=212.1
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.+|++|+|++| .+.+..|. .+..+++|+.|++++|.+++. .+. .+++|++|++++|.++ .+|. ..
T Consensus 75 ~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-------~l~~-~~ 142 (597)
T 3oja_B 75 RQVELLNLNDL-QIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-------SLPR-GI 142 (597)
T ss_dssp CCCSEEECTTS-CCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-------CCCT-TT
T ss_pred CCCcEEECCCC-CCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-------CCCH-HH
Confidence 58999999999 78766554 789999999999999999886 332 7999999999999874 2332 22
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh---
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV--- 202 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l--- 202 (348)
+.++++|++|++++|.+....+ ..+..+++|++|++++|.+.+.. +..+++|+.|++++|.......+..+
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L 216 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEEL 216 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEE
T ss_pred hccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhhee
Confidence 6889999999999999988766 56788999999999999988743 34456666666665532111111000
Q ss_pred ------------hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCC
Q 035693 203 ------------ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKL 270 (348)
Q Consensus 203 ------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 270 (348)
...++|+.|++++|.+.+ +..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+
T Consensus 217 ~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 293 (597)
T 3oja_B 217 DASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293 (597)
T ss_dssp ECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EE
T ss_pred eccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CC
Confidence 123579999999999875 366888999999999999987766778888999999999999998 46
Q ss_pred CccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693 271 PDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 271 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|++.+ ++ ...+++|++|++++|++++.
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEHH
T ss_pred CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCCh
Confidence 6667778999999999999996 77778889999999999999976 44 23448999999999998753
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7.7e-26 Score=210.65 Aligned_cols=245 Identities=24% Similarity=0.280 Sum_probs=116.5
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcce------------
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSW------------ 116 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 116 (348)
.++++|++++| .+.+. + .+.++++|+.|++++|.+.+......+++|++|++++|.+.....+
T Consensus 68 ~~L~~L~Ls~n-~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 68 NNLTQINFSNN-QLTDI-T---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 142 (466)
T ss_dssp TTCCEEECCSS-CCCCC-G---GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred cCCCEEECCCC-ccCCc-h---hhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence 56777777777 55432 2 2556666666666666655542222555555555555544321000
Q ss_pred -----e----------------ecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 117 -----R----------------LEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 117 -----~----------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
. ..+.....+.++++|++|++++|.+.... .+..+++|++|++++|.+.+..+
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----VLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCCccccccc-
Confidence 0 00000011344455555555555554332 24445555555555555554332
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
+..+++|++|++++|.... ...+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... +.+..+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTA 288 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTT
T ss_pred -ccccCCCCEEECCCCCccc---chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc--ccccCCCc
Confidence 4445555555555553221 1234455556666666655543222 44555555565555554322 12444455
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 5555555555543211 3444555555555555544322 3344444444444444443
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.4e-27 Score=223.49 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPI 111 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~ 111 (348)
.++++|++++| .+.+..|. .+.++++|++|++++|.+++. .+. .+++|++|++++|.+.
T Consensus 50 ~~L~~L~Ls~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 50 ANLQVLILKSS-RINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCS
T ss_pred CcccEEECCCC-CcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCccc
Confidence 67888888888 66655544 677888888888888877764 222 6778888888887764
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.6e-27 Score=205.20 Aligned_cols=251 Identities=22% Similarity=0.233 Sum_probs=202.4
Q ss_pred EEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCC
Q 035693 80 SLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPN 158 (348)
Q Consensus 80 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 158 (348)
.++.+++.++. +|. ..++|++|++++|.+. .++. ..+.++++|++|++++|.+..... ....+..+++
T Consensus 11 ~l~c~~~~l~~--ip~~~~~~l~~L~L~~n~l~-------~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~ 79 (306)
T 2z66_A 11 EIRCNSKGLTS--VPTGIPSSATRLELESNKLQ-------SLPH-GVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTS 79 (306)
T ss_dssp EEECCSSCCSS--CCSCCCTTCCEEECCSSCCC-------CCCT-TTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSC
T ss_pred EEEcCCCCccc--CCCCCCCCCCEEECCCCccC-------ccCH-hHhhccccCCEEECCCCccCcccC-cccccccccc
Confidence 44444444444 343 3468999999999874 2332 236889999999999999875431 0134567899
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 238 (348)
|++|++++|.+.. ++..+..+++|++|++++|..........+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 9999999999886 666688899999999999954332223578899999999999999987777888899999999999
Q ss_pred CCCCCC-CCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 239 YNSLLQ-GSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 239 ~~~l~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
+|.+.. .....+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 998765 3456677799999999999999977688889999999999999999987676788899999999999999987
Q ss_pred cCchhhhhhcCCCeeecccCccccc
Q 035693 318 IPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 318 ~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
.+..+...+++|++|++++|++++.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CHHHHHhhhccCCEEEccCCCeecc
Confidence 7766655545899999999999864
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-26 Score=200.42 Aligned_cols=214 Identities=20% Similarity=0.164 Sum_probs=122.7
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN 204 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 204 (348)
+.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|. +....+..+..
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 127 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG 127 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred cccCCCCCEEECCCCccceeCH---hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence 4555556666666555554433 345555666666666664 444445555566666666666653 33333445556
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693 205 LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284 (348)
Q Consensus 205 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~ 284 (348)
+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 66666666666666544444455666666666666665544444455566677777777766655566666666777777
Q ss_pred ecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
+++|.+.+..+..+..+++|+.|++++|++.+..+.... ...++.+..+.+.+....|+
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESG
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCch
Confidence 777777665555566667777777777776653332211 12334444555555555443
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.3e-25 Score=216.64 Aligned_cols=130 Identities=25% Similarity=0.246 Sum_probs=100.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.++++|+|++| .+.+--+. .|.++++|++|+|++|.+++..- ...+++|++|++++|.++. ++. ..|
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-------l~~-~~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-------LAL-GAF 120 (635)
T ss_dssp TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECG-GGG
T ss_pred cCCCEEEeeCC-CCCCCCHH--HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-------CCH-HHh
Confidence 47999999999 88754444 78999999999999999987521 2279999999999998742 221 237
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEcccCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRDNH 192 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 192 (348)
.++++|++|++++|+++...+ ..+.++++|++|++++|.+... .|..+..+++|++|++++|.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 888889999998888877654 4577788888888888887653 56677778888888887764
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.8e-25 Score=207.05 Aligned_cols=207 Identities=21% Similarity=0.189 Sum_probs=150.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
+++++|+++++ .+.+ +| .+..+++|+.|++++|.+++.. ...+++|++|++++|.++. ++ +.+
T Consensus 42 ~~L~~L~Ls~n-~l~~-~~---~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-------~~----~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHNS-SITD-MT---GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-------LD----VTP 104 (457)
T ss_dssp TTCCEEECCSS-CCCC-CT---TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-------CC----CTT
T ss_pred CCCCEEEccCC-Cccc-Ch---hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-------ee----cCC
Confidence 67888999988 6664 34 5788889999999988888863 4478889999999887642 11 567
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 208 (348)
+++|++|++++|+++... +..+++|++|++++|.+++. .+..+++|++|++++|..... + .+..+++|
T Consensus 105 l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~-~--~~~~l~~L 172 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK-L--DVTPQTQL 172 (457)
T ss_dssp CTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC-C--CCTTCTTC
T ss_pred CCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc-c--ccccCCcC
Confidence 888888888888887642 67788888888888888773 266778888888888743332 2 35667778
Q ss_pred CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC 288 (348)
Q Consensus 209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n 288 (348)
++|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+++|++|++++|++++ +| ++.+++|+.|++++|
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 888888887764 33 56677777777777776543 35556777777777777774 44 566677777777777
Q ss_pred ccCCC
Q 035693 289 NFTRP 293 (348)
Q Consensus 289 ~l~~~ 293 (348)
.+.+.
T Consensus 244 ~l~~~ 248 (457)
T 3bz5_A 244 PLTEL 248 (457)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 77764
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=206.57 Aligned_cols=247 Identities=21% Similarity=0.205 Sum_probs=199.3
Q ss_pred EEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC--CCCCCCcEEecCCCCCCCCcceeecCCChhhhcCC
Q 035693 52 IGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP--SSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNL 129 (348)
Q Consensus 52 ~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 129 (348)
..++.++. .+. .+|. .+ .++++.|++++|.++..... ..+++|++|++++|.+.. ..+ ..+.++
T Consensus 46 ~~v~c~~~-~l~-~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~--~~~~~l 111 (440)
T 3zyj_A 46 SKVICVRK-NLR-EVPD--GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------IEI--GAFNGL 111 (440)
T ss_dssp CEEECCSC-CCS-SCCS--CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE------ECG--GGGTTC
T ss_pred CEEEeCCC-CcC-cCCC--CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc------cCh--hhccCC
Confidence 45555555 443 4554 33 36899999999998886222 278999999999998642 222 337889
Q ss_pred CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 209 (348)
++|++|++++|+++.... ..+..+++|++|++++|.+....+..+..+++|++|++++|..........+.++++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp SSCCEEECCSSCCSSCCT---TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred ccCCEEECCCCcCCeeCH---hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 999999999999987765 46788999999999999998876778889999999999987555544455788899999
Q ss_pred EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693 210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289 (348)
Q Consensus 210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~ 289 (348)
+|++++|.+. .+| .+..+++|+.|++++|.+.......|..+++|++|++++|++.+..+..+..+++|+.|+|++|+
T Consensus 189 ~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 189 YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred eecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 9999999987 555 47788999999999998877777788889999999999999987777788889999999999999
Q ss_pred cCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 290 FTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
++...+..+..+++|+.|++++|++..+
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCccChhHhccccCCCEEEcCCCCccCC
Confidence 9987777788889999999999998764
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.8e-25 Score=207.33 Aligned_cols=228 Identities=21% Similarity=0.202 Sum_probs=167.5
Q ss_pred cccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 76 QYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
++|+.|++++|.+++. .+. .+++|++|++++|.+. ...+.. +.++++|++|++++|++....+ ..
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIR------QIEVGA--FNGLASLNTLELFDNWLTVIPS---GA 142 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC------EECTTT--TTTCTTCCEEECCSSCCSBCCT---TT
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccC------CcChhh--ccCcccCCEEECCCCcCCccCh---hh
Confidence 5788888888888775 222 7788888888888763 222233 6778888888888888776654 45
Q ss_pred hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCc
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTL 232 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 232 (348)
+..+++|++|++++|.+....+..+..+++|++|++++|..........+..+++|++|++++|.+.+ +| .+..+++|
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccc
Confidence 67788888888888888776566777888888888887644444444467777888888888887763 33 46677788
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693 233 ETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312 (348)
Q Consensus 233 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 312 (348)
+.|++++|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 88888888776666666777778888888888887666667777788888888888888766666677788888888888
Q ss_pred ccCCc
Q 035693 313 HFSDP 317 (348)
Q Consensus 313 ~l~~~ 317 (348)
++.++
T Consensus 301 p~~Cd 305 (452)
T 3zyi_A 301 PWNCD 305 (452)
T ss_dssp CEECS
T ss_pred CcCCC
Confidence 87654
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.2e-25 Score=204.53 Aligned_cols=259 Identities=24% Similarity=0.283 Sum_probs=145.2
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
.++++|+++++ .+. .+| .+..+++|+.|++++|.+++......+++|++|++++|.+... +. +.+
T Consensus 46 ~~l~~L~l~~~-~i~-~l~---~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-------~~---~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRL-GIK-SID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TP---LAN 110 (466)
T ss_dssp HTCCEEECCSS-CCC-CCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-------GG---GTT
T ss_pred ccccEEecCCC-CCc-cCc---chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC-------hh---hcC
Confidence 57999999998 664 354 5889999999999999998863334899999999999987531 11 567
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-------------------HHhhhccCCCEEEcc
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-------------------HHLANLLSLSVIRLR 189 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~ 189 (348)
+++|++|++++|.+.+..+ +..+++|++|++++|.+.+... ..+..+++|++|+++
T Consensus 111 l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 7888888888887766532 5666777777777666554210 113344455555555
Q ss_pred cCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCC--------------------
Q 035693 190 DNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPH-------------------- 249 (348)
Q Consensus 190 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-------------------- 249 (348)
+|.. ... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. .+.
T Consensus 186 ~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 186 SNKV-SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp SSCC-CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcC-CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccc
Confidence 5532 111 224444555555555554443222 3334444444444444321 122
Q ss_pred --CCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhc
Q 035693 250 --FPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSR 327 (348)
Q Consensus 250 --~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 327 (348)
+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ ...++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 331 (466)
T 1o6v_A 259 APLSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLT 331 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred hhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence 33344444444444444422 11 3444455555555555544222 3445555555555555554322 22335
Q ss_pred CCCeeecccCcccc
Q 035693 328 NLNYLNLSSNDLTG 341 (348)
Q Consensus 328 ~L~~L~l~~n~l~g 341 (348)
+|++|++++|.+++
T Consensus 332 ~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 332 KLQRLFFYNNKVSD 345 (466)
T ss_dssp TCCEEECCSSCCCC
T ss_pred cCCEeECCCCccCC
Confidence 55555555555543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=205.48 Aligned_cols=226 Identities=23% Similarity=0.244 Sum_probs=150.9
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
.+++.|+|++| .+.+..+. .+.++++|+.|++++|.++.... ...+++|++|++++|.++. ++. ..+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~-~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVN--SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-------IPN-GAF 132 (440)
T ss_dssp TTCSEEECCSC-CCCEECTT--TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-------CCT-TTS
T ss_pred CCCcEEEccCC-cCCeeCHH--HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-------eCH-hHh
Confidence 45777777777 66544443 67777777777777777766421 1267777777777776531 111 226
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
..+++|++|++++|++..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.... ++ .+..+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l 206 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL 206 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred hccccCceeeCCCCcccccCH---HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence 677777777777777765554 356677777777777743 333333456777777777777774332 22 35667
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L 285 (348)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 77777777777777655667777777777777777776666666777777777777777777555555666777777777
Q ss_pred cCCccC
Q 035693 286 SSCNFT 291 (348)
Q Consensus 286 ~~n~l~ 291 (348)
++|++.
T Consensus 287 ~~Np~~ 292 (440)
T 3zyj_A 287 HHNPWN 292 (440)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 777765
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.4e-25 Score=192.25 Aligned_cols=211 Identities=23% Similarity=0.256 Sum_probs=181.9
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 208 (348)
.++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.......+..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 4578888888888877654 4678899999999999999987788999999999999999954555557788899999
Q ss_pred CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC 288 (348)
Q Consensus 209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n 288 (348)
++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 99999999998777788899999999999999987666666888999999999999998555556888999999999999
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693 289 NFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343 (348)
Q Consensus 289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i 343 (348)
.+.+..+..+..+++|+.|++++|++.+ ++...+..+++|++|++++|+++...
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCC
Confidence 9999888899999999999999999987 55444555689999999999987543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-25 Score=199.11 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=179.1
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh--
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA-- 203 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-- 203 (348)
+.++++|++|++++|.+...+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.. ...++..+.
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~-~~~~p~~~~~~ 173 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELP----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE-LTELPEPLAST 173 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCC----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT-CCCCCSCSEEE
T ss_pred hhhCCCCCEEECCCCCccchh----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC-ccccChhHhhc
Confidence 667889999999999988443 45788999999999999999 4788999999999999999744 334555444
Q ss_pred -------cCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693 204 -------NLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276 (348)
Q Consensus 204 -------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~ 276 (348)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+.. .++.+..+++|++|++++|.+.+.+|..++.
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 4899999999999998 888889999999999999998763 3445777899999999999998889999999
Q ss_pred CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+... ++|+.+++..+.+.
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSC
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHH
Confidence 9999999999999999899999999999999999999999999887654 89999999987664
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.8e-25 Score=207.37 Aligned_cols=226 Identities=20% Similarity=0.192 Sum_probs=190.1
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.++++|+|++| .+.+..+. .+.++++|+.|++++|.+++. .+. .+++|++|++++|.+.. ..+. .
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~------~~~~--~ 142 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTV------IPSG--A 142 (452)
T ss_dssp TTCSEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSB------CCTT--T
T ss_pred CCccEEECcCC-cCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCc------cChh--h
Confidence 58999999999 88766665 789999999999999999886 322 79999999999998742 2222 3
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN 204 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 204 (348)
+.++++|++|++++|++..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.... + ..+..
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~ 216 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M-PNLTP 216 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C-CCCTT
T ss_pred hcccCCCCEEECCCCCcceeCH---hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c-ccccc
Confidence 7889999999999999987665 467889999999999954 444444578899999999999995432 2 34778
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693 205 LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284 (348)
Q Consensus 205 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~ 284 (348)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 89999999999999977788899999999999999998877778888899999999999999966666778899999999
Q ss_pred ecCCccCC
Q 035693 285 VSSCNFTR 292 (348)
Q Consensus 285 L~~n~l~~ 292 (348)
+++|++..
T Consensus 297 L~~Np~~C 304 (452)
T 3zyi_A 297 LHHNPWNC 304 (452)
T ss_dssp CCSSCEEC
T ss_pred ccCCCcCC
Confidence 99999874
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.2e-24 Score=198.73 Aligned_cols=267 Identities=16% Similarity=0.156 Sum_probs=145.3
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
.++++|++++| .+.+ + .+..+++|+.|++++|.+++.. ...+++|++|++++|.++. ++ +.+
T Consensus 64 ~~L~~L~Ls~n-~l~~-~----~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~-------l~----~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSN-NITT-L----DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK-------LD----VSQ 125 (457)
T ss_dssp TTCSEEECCSS-CCSC-C----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC-------CC----CTT
T ss_pred CCCCEEEccCC-cCCe-E----ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe-------ec----CCC
Confidence 56777777777 5543 2 2556667777777777666652 3356666666666665532 11 344
Q ss_pred CCCCcEEEccCcCCCCcchhhh----------------hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWC----------------KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNH 192 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 192 (348)
+++|++|++++|+++.....-. ..+..+++|++|++++|.+++ ++ +..+++|+.|++++|.
T Consensus 126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC
T ss_pred CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCc
Confidence 5555555555555443210000 013344555555555555554 22 4455556666665553
Q ss_pred CCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCC---------------------
Q 035693 193 AVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFP--------------------- 251 (348)
Q Consensus 193 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------------------- 251 (348)
... . .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.+.......+.
T Consensus 203 l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 203 ITK-L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CSC-C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred CCe-e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 222 1 24555666666666666653 33 45556666666666655433222211
Q ss_pred --------CCCCCcEEEcccCCCCCCCCc--------cccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693 252 --------KNSSLRNLNLKNTSFSGKLPD--------SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS 315 (348)
Q Consensus 252 --------~~~~L~~L~ls~n~~~~~~~~--------~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 315 (348)
.+++|+.|++++|...+.+|. .+..+++|++|++++|++++ ++ +..+++|+.|++++|++.
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 124444555555543322221 13445677777777777777 32 667778888888888876
Q ss_pred CccCchh--------h---hhhcCCCeeecccCcccccCCCCC
Q 035693 316 DPIPTLR--------L---YMSRNLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 316 ~~~~~~~--------~---~~~~~L~~L~l~~n~l~g~ip~~~ 347 (348)
+ ++... + ..+..|..+++++|+++|+||..+
T Consensus 353 ~-l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 353 D-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp B-CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred C-ccccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 5 33210 0 011456777888888888888764
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=201.22 Aligned_cols=255 Identities=20% Similarity=0.205 Sum_probs=204.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
+++++|++++| .+.+..+. .+.++++|+.|++++|.+++. .+. .+++|++|++++|.++. ++ ...
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-------~~-~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSN-------LS-SSW 119 (353)
T ss_dssp TTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSS-------CC-HHH
T ss_pred ccCcEEECCCC-cCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCc-------CC-HhH
Confidence 68999999999 77654433 689999999999999999886 332 78999999999998742 22 233
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVAN 204 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 204 (348)
+.++++|++|++++|++...... ..+..+++|++|++++| .+....+..+..+++|++|++++|. .....+..+..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 196 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKS 196 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT
T ss_pred hCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhc
Confidence 78899999999999999865431 24778999999999999 4666567788999999999999994 55556778899
Q ss_pred CCCCCEEEccCCcCCCccccc-ccCCCCccEEEccCCCCCCCCCCCCC---CCCCCcEEEcccCCCCC----CCCccccC
Q 035693 205 LLNLTTLDLSQCDLHGKFPEK-VLQVPTLETLDLSYNSLLQGSLPHFP---KNSSLRNLNLKNTSFSG----KLPDSIGN 276 (348)
Q Consensus 205 l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~---~~~~L~~L~ls~n~~~~----~~~~~l~~ 276 (348)
+++|++|++++|.+. ..+.. +..+++|+.|++++|.+.......+. ....++.++++++.+.+ .+|..+..
T Consensus 197 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp CSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 999999999999986 44443 44589999999999988765544433 36678899999988764 35667888
Q ss_pred CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319 (348)
Q Consensus 277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 319 (348)
+++|++|++++|.+....+..+..+++|+.|++++|++.+..+
T Consensus 276 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999999997433445889999999999999998655
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3e-26 Score=202.73 Aligned_cols=266 Identities=17% Similarity=0.148 Sum_probs=208.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
..++..+++.+ .+...... .+..+++|+.|++++|.+++. .+ ..+++|++|++++|.+.. .+.
T Consensus 10 ~~l~i~~ls~~-~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-------~~~--- 75 (317)
T 3o53_A 10 NRYKIEKVTDS-SLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYE-------TLD--- 75 (317)
T ss_dssp TEEEEESCCTT-THHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEE-------EEE---
T ss_pred CceeEeecccc-chhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCc-------chh---
Confidence 34667778877 66544443 455778999999999999885 33 289999999999998642 111
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+..+++|++|++++|.+.+.. ..++|++|++++|.+.+..+. .+++|++|++++|. +....+..+..+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~--------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l 143 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELL--------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCR 143 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEE--------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGG
T ss_pred hhhcCCCCEEECcCCcccccc--------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhcc
Confidence 678899999999999886543 348999999999999875443 36789999999994 454555677889
Q ss_pred CCCCEEEccCCcCCCcccccc-cCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEe
Q 035693 206 LNLTTLDLSQCDLHGKFPEKV-LQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVD 284 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~ 284 (348)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+... +....+++|++|++++|.++ .++..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 999999999999986656655 4689999999999987544 44445889999999999998 5566688899999999
Q ss_pred ecCCccCCCCcccccCCCCCCEEeCCCCccC-CccCchhhhhhcCCCeeecccC-cccccCCC
Q 035693 285 VSSCNFTRPIPTSMANLTQLFHLDFSSNHFS-DPIPTLRLYMSRNLNYLNLSSN-DLTGGISS 345 (348)
Q Consensus 285 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n-~l~g~ip~ 345 (348)
+++|.+.. +|..+..+++|+.|++++|++. +.++..+ ...++|+.++++++ .++|..|.
T Consensus 221 L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~-~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH-HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH-hccccceEEECCCchhccCCchh
Confidence 99999997 7778888999999999999998 4444444 34478999999855 67766654
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.4e-27 Score=206.12 Aligned_cols=248 Identities=23% Similarity=0.260 Sum_probs=144.6
Q ss_pred ccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhc-------CCCCCcEEEccCcCCCC
Q 035693 73 FSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQ-------NLTELRELYLDNVDLSG 144 (348)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~ 144 (348)
...++|+.|++++|.+ . +|. -...|++|++++|.+. ...++.. +. ++++|++|++++|++++
T Consensus 40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~L~~L~L~~n~l~-----~~~~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A--DLGQFTDIIKSLSLKRLTVR-----AARIPSR--ILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEECTTHHHHCCTT-C--CCHHHHHHHHHCCCCEEEEE-----EEECBHH--HHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred ccCCCceeEeeccccc-c--cHHHHHHHHhhccccccccc-----CCCcCHH--HHHHHHHhcCcCCccEEEccCCcccc
Confidence 3445555555555555 1 343 1112555555555432 1222222 22 46667777777776664
Q ss_pred cchhhhhhh--CCCCCCcEEEccCccCCCcchHHhhhc-----cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCc
Q 035693 145 RRTEWCKAM--SFLPNLQVLNLSNCLLSDPINHHLANL-----LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCD 217 (348)
Q Consensus 145 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 217 (348)
..+ ..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|. +....+..+..+++|++|++++|.
T Consensus 110 ~~~---~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 110 TAP---PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCC---CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hhH---HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCC
Confidence 433 222 5666777777777776664 5555555 677777777763 343444566667777777777776
Q ss_pred CCCc--ccccc--cCCCCccEEEccCCCCCCCC---CCCCCCCCCCcEEEcccCCCCCCCC-ccccCCCCCCEEeecCCc
Q 035693 218 LHGK--FPEKV--LQVPTLETLDLSYNSLLQGS---LPHFPKNSSLRNLNLKNTSFSGKLP-DSIGNLENLASVDVSSCN 289 (348)
Q Consensus 218 ~~~~--~~~~l--~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~~~~L~~L~L~~n~ 289 (348)
+.+. .+..+ ..+++|++|++++|.+.... ...+..+++|++|++++|.+.+..| ..+..+++|++|++++|.
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 5533 22233 56677777777777653210 0112235677777777777765443 334456777777777777
Q ss_pred cCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 290 FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
++. +|..+. ++|+.|++++|++.+ +|. +..+++|++|++++|++++
T Consensus 265 l~~-ip~~~~--~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 265 LKQ-VPKGLP--AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSS-CCSSCC--SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTC
T ss_pred cCh-hhhhcc--CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCC
Confidence 774 555544 677788888887776 354 3344777888888887765
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.4e-25 Score=208.42 Aligned_cols=268 Identities=22% Similarity=0.234 Sum_probs=177.3
Q ss_pred ccCCCCCCCCCCccccceE--------eCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCC
Q 035693 26 AKMSQWSESTDCCDWNGVD--------CDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSL 97 (348)
Q Consensus 26 ~~~~~w~~~~~~~~~~~~~--------c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 97 (348)
+..+.|..+.++|.|.+.. |.. .+++.|+++++ .+. .+|. .+. ++|+.|++++|.++. ++..+
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~-~~l~~L~ls~n-~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~~l 80 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLN-NGNAVLNVGES-GLT-TLPD--CLP--AHITTLVIPDNNLTS--LPALP 80 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH-HCCCEEECCSS-CCS-CCCS--CCC--TTCSEEEECSCCCSC--CCCCC
T ss_pred HHHHHHHhcCCcchhccccccCcccccccC-CCCcEEEecCC-CcC-ccCh--hhC--CCCcEEEecCCCCCC--CCCcC
Confidence 3455677788899986632 221 45888999988 775 6665 343 788889998888886 56688
Q ss_pred CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693 98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL 177 (348)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 177 (348)
++|++|++++|.++ .+|. .+++|++|++++|.++..+. .+++|++|++++|.++. +|.
T Consensus 81 ~~L~~L~Ls~N~l~-------~lp~-----~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~-lp~-- 138 (622)
T 3g06_A 81 PELRTLEVSGNQLT-------SLPV-----LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS-LPV-- 138 (622)
T ss_dssp TTCCEEEECSCCCS-------CCCC-----CCTTCCEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSC-CCC--
T ss_pred CCCCEEEcCCCcCC-------cCCC-----CCCCCCEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCc-CCC--
Confidence 88888888888764 2222 45677777777777765432 34566666666666655 332
Q ss_pred hhccCCCEEEcccCCCCCCChhhhh-----------------hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCC
Q 035693 178 ANLLSLSVIRLRDNHAVSCQVPEFV-----------------ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN 240 (348)
Q Consensus 178 ~~~~~L~~L~l~~~~~~~~~~~~~l-----------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 240 (348)
.+++|++|++++|.... ++..+ ..+++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 139 -~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N 211 (622)
T 3g06_A 139 -LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNN 211 (622)
T ss_dssp -CCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred -CCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCC
Confidence 13566666666663221 11110 22355666666666655 2332 2355666666666
Q ss_pred CCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693 241 SLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320 (348)
Q Consensus 241 ~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 320 (348)
.+.. ++. ..++|++|++++|.+++ +| ..+++|+.|++++|.+.. +|. .+++|+.|++++|++. .+|.
T Consensus 212 ~l~~--l~~--~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 212 RLTS--LPA--LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp CCSS--CCC--CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred cccc--cCC--CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence 5432 111 13678899999998883 55 345789999999999986 554 5678999999999998 4777
Q ss_pred hhhhhhcCCCeeecccCcccccCCC
Q 035693 321 LRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 321 ~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
.+. .+++|+.|+|++|.++|.+|.
T Consensus 279 ~l~-~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 SLI-HLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGG-GSCTTCEEECCSCCCCHHHHH
T ss_pred HHh-hccccCEEEecCCCCCCcCHH
Confidence 644 458999999999999877654
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=9.9e-27 Score=205.31 Aligned_cols=270 Identities=23% Similarity=0.265 Sum_probs=206.0
Q ss_pred CCCCCCCCCCccccceEeCC-CCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCC----------C
Q 035693 28 MSQWSESTDCCDWNGVDCDE-AGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPS----------S 96 (348)
Q Consensus 28 ~~~w~~~~~~~~~~~~~c~~-~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------~ 96 (348)
.+.|.....|+.+..+.... ..++++|+++++ .+ .+|. .+... |+.|++++|.+....++. .
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n-~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 93 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD-TE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG 93 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCC-TT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccc-cc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC
Confidence 45666555565554443221 156888888888 66 5554 45444 999999999886654554 4
Q ss_pred CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC--CCCCcEEEccCccCCCcch
Q 035693 97 LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF--LPNLQVLNLSNCLLSDPIN 174 (348)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~ 174 (348)
+++|++|++++|.+. ..+|..-++..+++|++|++++|++++. +..+..+.. .++|++|++++|.+.+..+
T Consensus 94 l~~L~~L~L~~n~l~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVT------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCB------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCccc------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 899999999999874 2344431138899999999999999887 433333322 3899999999999999777
Q ss_pred HHhhhccCCCEEEcccCCCCCC-Chhhhh--hcCCCCCEEEccCCcCCC--ccc-ccccCCCCccEEEccCCCCCCCC-C
Q 035693 175 HHLANLLSLSVIRLRDNHAVSC-QVPEFV--ANLLNLTTLDLSQCDLHG--KFP-EKVLQVPTLETLDLSYNSLLQGS-L 247 (348)
Q Consensus 175 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~l~~~~-~ 247 (348)
..+..+++|++|++++|+.... ..+..+ ..+++|++|++++|.+.+ ..+ ..+..+++|+.|++++|.+.... .
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 8999999999999999953221 123344 788999999999999873 222 33457899999999999986655 3
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 248 PHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 248 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+.+..+++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|+.|++++|++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55566889999999999998 7777665 7999999999999984 65 8889999999999999986
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=8.2e-24 Score=204.10 Aligned_cols=110 Identities=24% Similarity=0.163 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFF 126 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 126 (348)
++|++|+|++| .+.+--+. ++.++++|++|+|++|.+++... ...+++|++|++++|.++. ++. ..+
T Consensus 76 ~~L~~L~Ls~N-~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-------l~~-~~~ 144 (635)
T 4g8a_A 76 PELQVLDLSRC-EIQTIEDG--AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-------LEN-FPI 144 (635)
T ss_dssp TTCCEEECTTC-CCCEECTT--TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-------STT-CCC
T ss_pred CCCCEEECCCC-cCCCcChh--HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-------CCh-hhh
Confidence 68899999998 77643333 68888999999999988877421 1278888888888887642 111 125
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSD 171 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 171 (348)
.++++|++|++++|.+..... ...+..+++|++|++++|.+++
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCcccCeeccccCccccCCC--chhhccchhhhhhcccCccccc
Confidence 666777777777776654321 1344556666666666665543
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.4e-24 Score=184.06 Aligned_cols=183 Identities=21% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE 233 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 233 (348)
..+++|++|++++|.+.+ + ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 334444444444444443 1 134444445555554442 2222333344555555555555555543334455556666
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCc
Q 035693 234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNH 313 (348)
Q Consensus 234 ~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 313 (348)
.|++++|.+.......+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666665543333345556666666666666664444445666667777777777766555556666777777777776
Q ss_pred cCCccCchhhhhhcCCCeeecccCcccccCCCCC
Q 035693 314 FSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSNI 347 (348)
Q Consensus 314 l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~~ 347 (348)
+.+. +++|+.|+++.|.++|.+|.++
T Consensus 217 ~~~~--------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 217 WDCT--------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp BCCC--------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred cccc--------CcHHHHHHHHHHhCCCcccCcc
Confidence 6542 2456666777777777776643
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=181.21 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=101.4
Q ss_pred CCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCC
Q 035693 34 STDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISG 113 (348)
Q Consensus 34 ~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 113 (348)
++++|.|.|+.|....++++++++++ .+. .+|. .+ .++|+.|++++|.+++.. +
T Consensus 1 ~~~~C~~~~~~C~c~~~~~~l~~~~~-~l~-~ip~--~~--~~~l~~L~l~~n~l~~~~-~------------------- 54 (270)
T 2o6q_A 1 NEALCKKDGGVCSCNNNKNSVDCSSK-KLT-AIPS--NI--PADTKKLDLQSNKLSSLP-S------------------- 54 (270)
T ss_dssp CCCCBGGGTCSBEEETTTTEEECTTS-CCS-SCCS--CC--CTTCSEEECCSSCCSCCC-T-------------------
T ss_pred CCccCCCCCCCCEeCCCCCEEEccCC-CCC-ccCC--CC--CCCCCEEECcCCCCCeeC-H-------------------
Confidence 46899999999865556678888887 554 3443 22 145666666666655431 1
Q ss_pred cceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693 114 FSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193 (348)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 193 (348)
. .+.++++|++|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 55 --------~--~~~~l~~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~- 120 (270)
T 2o6q_A 55 --------K--AFHRLTKLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ- 120 (270)
T ss_dssp --------T--SSSSCTTCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-
T ss_pred --------H--HhcCCCCCCEEECCCCccCeeCh---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-
Confidence 1 13444555555555555444332 223445555555555555544333334444444444444442
Q ss_pred CCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273 (348)
Q Consensus 194 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 273 (348)
+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++|++|++++|.+++..+..
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 22222233344444444444444443222222334444444444444433322223333344444444444443222222
Q ss_pred ccCCCCCCEEeecCCcc
Q 035693 274 IGNLENLASVDVSSCNF 290 (348)
Q Consensus 274 l~~~~~L~~L~L~~n~l 290 (348)
+..+++|+.|++++|++
T Consensus 201 ~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hccccCCCEEEecCCCe
Confidence 33334444444444433
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3e-23 Score=191.99 Aligned_cols=256 Identities=24% Similarity=0.293 Sum_probs=142.1
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
.++++|++++| .+.+ +| .+.++++|++|++++|.+++ +|...++|++|++++|.+. .++. +.+
T Consensus 131 ~~L~~L~L~~n-~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~~~~L~~L~L~~n~l~-------~l~~---~~~ 193 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDLPPSLEFIAAGNNQLE-------ELPE---LQN 193 (454)
T ss_dssp TTCCEEECCSS-CCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCS-------SCCC---CTT
T ss_pred CCCCEEECcCC-CCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCCcccccEEECcCCcCC-------cCcc---ccC
Confidence 35667777766 5553 54 46777777777777777765 5555667777777777653 1332 577
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNL 208 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 208 (348)
+++|++|++++|++.+.+. ..++|++|++++|.+.. +| .+..+++|++|++++|.... ++. .+++|
T Consensus 194 l~~L~~L~l~~N~l~~l~~-------~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L 259 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKKLPD-------LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSL 259 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTC
T ss_pred CCCCCEEECCCCcCCcCCC-------CcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc--ccc---ccccc
Confidence 7788888888877765332 12467777777777764 45 36677777777777774322 221 23566
Q ss_pred CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCC--CCCC-------------CCCC-CCCcEEEcccCCCCCCCCc
Q 035693 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQG--SLPH-------------FPKN-SSLRNLNLKNTSFSGKLPD 272 (348)
Q Consensus 209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~~-------------~~~~-~~L~~L~ls~n~~~~~~~~ 272 (348)
++|++++|.+.+ +|.. +++|+.|++++|.+... .++. +... ++|++|++++|++++ +|.
T Consensus 260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~ 334 (454)
T 1jl5_A 260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA 334 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC
T ss_pred CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc
Confidence 677776666653 3322 24566666666554321 0000 1111 467777777777763 444
Q ss_pred cccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC--ccCchhhhh------------hcCCCeeecccCc
Q 035693 273 SIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD--PIPTLRLYM------------SRNLNYLNLSSND 338 (348)
Q Consensus 273 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~------------~~~L~~L~l~~n~ 338 (348)
. +++|+.|++++|.+.. +|. .+++|++|++++|++.+ .+|..+... +++|++|++++|+
T Consensus 335 ~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 335 L---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred c---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3 4677888888887775 554 35678888888888776 555443221 1567888888888
Q ss_pred ccc--cCCCCC
Q 035693 339 LTG--GISSNI 347 (348)
Q Consensus 339 l~g--~ip~~~ 347 (348)
++| .||.++
T Consensus 408 l~~~~~iP~sl 418 (454)
T 1jl5_A 408 LREFPDIPESV 418 (454)
T ss_dssp -----------
T ss_pred CCccccchhhH
Confidence 876 777643
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.1e-26 Score=216.13 Aligned_cols=284 Identities=20% Similarity=0.214 Sum_probs=189.3
Q ss_pred CEEEEeCCCCccccc----cccCCcccccccccCEEeCCCCCCCCCCC-------CCCCCCCcEEecCCCCCCCCcceee
Q 035693 50 HVIGLDLSAEPILIG----SLENASGLFSLQYLQSLNLGFTLFYGFPM-------PSSLPRLVTLDLSSREPISGFSWRL 118 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~ 118 (348)
++++|++++| .+.+ .++. .+.++++|+.|++++|.+++.+. ....++|++|++++|.++.... .
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~ 160 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSS--TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--E 160 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHH--HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--H
T ss_pred ceeEEEccCC-CCCHHHHHHHHH--HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--H
Confidence 5777777777 5542 3343 56677777777777777654311 1135568888887776542100 0
Q ss_pred cCCChhhhcCCCCCcEEEccCcCCCCcchhhh-hhhC-CCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCC
Q 035693 119 EIPNFNFFQNLTELRELYLDNVDLSGRRTEWC-KAMS-FLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNH 192 (348)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 192 (348)
.++ ..+..+++|++|++++|.+.+...... ..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 161 ~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 161 PLA--SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHH--HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHH--HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 011 235667888888888888765433211 1121 356888888888888763 46667778889999988884
Q ss_pred CCCCCh-----hhhhhcCCCCCEEEccCCcCCCc----ccccccCCCCccEEEccCCCCCCCCCCCCCC-----CCCCcE
Q 035693 193 AVSCQV-----PEFVANLLNLTTLDLSQCDLHGK----FPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-----NSSLRN 258 (348)
Q Consensus 193 ~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~ 258 (348)
. .... +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.......+.. .++|++
T Consensus 239 l-~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 239 L-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp C-HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred C-ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 3 3221 11223577889999998888743 5666677888999999988764433322221 368999
Q ss_pred EEcccCCCCCC----CCccccCCCCCCEEeecCCccCCCCcccccC-----CCCCCEEeCCCCccCC----ccCchhhhh
Q 035693 259 LNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRPIPTSMAN-----LTQLFHLDFSSNHFSD----PIPTLRLYM 325 (348)
Q Consensus 259 L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~l~~n~l~~----~~~~~~~~~ 325 (348)
|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .++..+..
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~- 396 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA- 396 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-
Confidence 99999988754 3455667789999999999888644443332 5789999999999875 44544433
Q ss_pred hcCCCeeecccCccccc
Q 035693 326 SRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 326 ~~~L~~L~l~~n~l~g~ 342 (348)
+++|++|++++|++++.
T Consensus 397 ~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCCEEECCSSSCCHH
T ss_pred CCCccEEECCCCCCCHH
Confidence 48899999999998753
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-25 Score=196.83 Aligned_cols=241 Identities=20% Similarity=0.144 Sum_probs=197.5
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
++|++|++++| .+.+..|. .+.++++|+.|++++|.+++..-...+++|++|++++|.+.. +..
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-------------l~~ 97 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAA--DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-------------LLV 97 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHH--HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-------------EEE
T ss_pred CCCCEEECcCC-ccCcCCHH--HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-------------ccC
Confidence 57999999999 88766554 789999999999999999875333489999999999997531 344
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhh-hcCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFV-ANLLN 207 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~ 207 (348)
.++|++|++++|++..... ..+++|++|++++|.+++..+..+..+++|++|++++|.. ....+..+ ..+++
T Consensus 98 ~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDT 170 (317)
T ss_dssp CTTCCEEECCSSCCSEEEE------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTT
T ss_pred CCCcCEEECCCCccCCcCc------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC-CcccHHHHhhccCc
Confidence 5899999999999987654 3468899999999999997777888999999999999954 43344444 57899
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
|++|++++|.+... +. ...+++|++|++++|.+... .+.+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 171 L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 99999999999843 33 34589999999999987644 334777899999999999998 6788888899999999999
Q ss_pred CccC-CCCcccccCCCCCCEEeCCCCc-cCC
Q 035693 288 CNFT-RPIPTSMANLTQLFHLDFSSNH-FSD 316 (348)
Q Consensus 288 n~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~ 316 (348)
|++. +.++..+..+++|+.+++.+++ +.+
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccC
Confidence 9999 5677888888899999988543 444
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=3.6e-22 Score=184.80 Aligned_cols=253 Identities=28% Similarity=0.378 Sum_probs=145.1
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
+++++|++++| .+.+ +|. . +++|+.|++++|.+++ ++...++|++|++++|.+. .+|. +.+
T Consensus 91 ~~L~~L~l~~n-~l~~-lp~--~---~~~L~~L~l~~n~l~~--l~~~~~~L~~L~L~~n~l~-------~lp~---~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCN-SLTE-LPE--L---PQSLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQLE-------KLPE---LQN 151 (454)
T ss_dssp TTCSEEECCSS-CCSS-CCC--C---CTTCCEEECCSSCCSC--CCSCCTTCCEEECCSSCCS-------SCCC---CTT
T ss_pred CCCCEEEccCC-cCCc-ccc--c---cCCCcEEECCCCccCc--ccCCCCCCCEEECcCCCCC-------CCcc---cCC
Confidence 56788888887 6654 553 1 3677777777777765 3343467777777777653 2331 566
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCC------------
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSC------------ 196 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------ 196 (348)
+++|++|++++|++...+. ...+|++|++++|.+.+ +| .+..+++|++|++++|.....
T Consensus 152 l~~L~~L~l~~N~l~~lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred CCCCCEEECCCCcCcccCC-------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEEC
Confidence 6777777777776654321 12356666666666555 33 355555566665555532110
Q ss_pred ------ChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCC--
Q 035693 197 ------QVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSG-- 268 (348)
Q Consensus 197 ------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~-- 268 (348)
.++ .+..+++|++|++++|.+.+ +|. .+++|+.|++++|.+.. ++.. .++|++|++++|.+++
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~--l~~~--~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD--LPEL--PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC--CCCC--CTTCCEEECCSSCCSEES
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc--cCcc--cCcCCEEECcCCccCccc
Confidence 122 13444445555555544442 222 12445555555554322 1111 2456666666666553
Q ss_pred CCCccc-------------cCC-CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec
Q 035693 269 KLPDSI-------------GNL-ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334 (348)
Q Consensus 269 ~~~~~l-------------~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 334 (348)
.+|..+ ... ++|++|++++|++.+ +|.. +++|+.|++++|++.+ +|. .+++|++|++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L 364 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE----LPQNLKQLHV 364 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEEC
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc----hhhhccEEEC
Confidence 222111 112 467777777777766 4433 4678888888888875 665 2478999999
Q ss_pred ccCcccc--cCCCCC
Q 035693 335 SSNDLTG--GISSNI 347 (348)
Q Consensus 335 ~~n~l~g--~ip~~~ 347 (348)
++|+++| .+|.++
T Consensus 365 ~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 365 EYNPLREFPDIPESV 379 (454)
T ss_dssp CSSCCSSCCCCCTTC
T ss_pred CCCCCCcCCCChHHH
Confidence 9999998 788764
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.3e-24 Score=193.70 Aligned_cols=211 Identities=24% Similarity=0.265 Sum_probs=129.6
Q ss_pred CCccccceEeCCCCCEEEEeCCCCccccccccCCcccccc--cccCEEeCCCCCCCCCCCCC--CCCCCcEEecCCCCCC
Q 035693 36 DCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSL--QYLQSLNLGFTLFYGFPMPS--SLPRLVTLDLSSREPI 111 (348)
Q Consensus 36 ~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 111 (348)
-|.+|.++.+++ ..++.++++++ .+. +. .+..+ ++++.|++++|.+.+. .+. .+++|++|++++|.+.
T Consensus 35 vc~~W~~~~~~~-~~~~~l~l~~~-~~~---~~--~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 35 VCKRWYRLASDE-SLWQTLDLTGK-NLH---PD--VTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp SCHHHHHHHTCS-TTSSEEECTTC-BCC---HH--HHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHHhcCc-hhheeeccccc-cCC---HH--HHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcC
Confidence 345798888764 45789999988 554 22 56666 8999999999888775 333 6677777777777542
Q ss_pred CCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCc-cCCCc-chHHhhhccCCCEEEcc
Q 035693 112 SGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDP-INHHLANLLSLSVIRLR 189 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~ 189 (348)
. ..++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++. ++..+..+++|++|+++
T Consensus 107 ~-----~~~~~~--~~~~~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 107 V-----STLHGI--LSQCSKLQNLSLEGLRLSDPIV---NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp H-----HHHHHH--HTTBCCCSEEECTTCBCCHHHH---HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred H-----HHHHHH--HhhCCCCCEEeCcCcccCHHHH---HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 1 012222 6667777777777776654332 45666777777777777 45542 45556667777777777
Q ss_pred cC-CCCCCChhhhhhcCC-CCCEEEccCC--cCC-CcccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEccc
Q 035693 190 DN-HAVSCQVPEFVANLL-NLTTLDLSQC--DLH-GKFPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKN 263 (348)
Q Consensus 190 ~~-~~~~~~~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~ 263 (348)
+| ......++..+..++ +|++|++++| .++ ..++..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 76 332222455566677 7777777776 333 2344445556666666666665 3333333444444555555555
Q ss_pred C
Q 035693 264 T 264 (348)
Q Consensus 264 n 264 (348)
|
T Consensus 257 ~ 257 (336)
T 2ast_B 257 C 257 (336)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.7e-25 Score=208.02 Aligned_cols=212 Identities=21% Similarity=0.195 Sum_probs=109.3
Q ss_pred CCCcEEEccCcCCCCcch-hhhhhhCCCCCCcEEEccCccCCCcchHHhhh-----ccCCCEEEcccCCCCCC---Chhh
Q 035693 130 TELRELYLDNVDLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDPINHHLAN-----LLSLSVIRLRDNHAVSC---QVPE 200 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~---~~~~ 200 (348)
++|++|++++|++++... .+...+..+++|++|++++|.+.+..+..+.. .++|++|++++|..... .++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 345555555555543321 11223344555555555555554432222221 33566666655532221 1344
Q ss_pred hhhcCCCCCEEEccCCcCCCcc-----cccccCCCCccEEEccCCCCCCCCC----CCCCCCCCCcEEEcccCCCCCCCC
Q 035693 201 FVANLLNLTTLDLSQCDLHGKF-----PEKVLQVPTLETLDLSYNSLLQGSL----PHFPKNSSLRNLNLKNTSFSGKLP 271 (348)
Q Consensus 201 ~l~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~ls~n~~~~~~~ 271 (348)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 4555566666666666554321 1112235566666666665543321 122225666666666666543222
Q ss_pred cccc-----CCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCccCCccCchhhhh----hcCCCeeecccCc
Q 035693 272 DSIG-----NLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYM----SRNLNYLNLSSND 338 (348)
Q Consensus 272 ~~l~-----~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~ 338 (348)
..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|++.+..+..+... .++|++|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 2221 124677777777776653 34445556778888888887766444333321 3578888888888
Q ss_pred ccc
Q 035693 339 LTG 341 (348)
Q Consensus 339 l~g 341 (348)
+++
T Consensus 382 i~~ 384 (461)
T 1z7x_W 382 VSD 384 (461)
T ss_dssp CCH
T ss_pred CCh
Confidence 775
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8.3e-24 Score=197.56 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=174.2
Q ss_pred ccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693 73 FSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW 149 (348)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 149 (348)
..+++|+.|++++|.+++. .+. .+++|++|++++|.++. ..+ +..+++|++|++++|.+++.++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~------~~~----l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYE------TLD----LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp TTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEE------EEE----CTTCTTCCEEECCSSEEEEEEE--
T ss_pred ccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCC------Ccc----cccCCCCCEEEecCCcCCCCCC--
Confidence 3555788888888888775 222 77888888888887631 111 5678888888888888765432
Q ss_pred hhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccccccc-C
Q 035693 150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL-Q 228 (348)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~ 228 (348)
.++|++|++++|.+.+..+. .+++|+.|++++| .+....+..+..+++|++|++++|.+.+..|..+. .
T Consensus 98 ------~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 98 ------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp ------CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ------CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 37888888888888875443 3578888888888 44555566777888888899988888876666665 6
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEe
Q 035693 229 VPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLD 308 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 308 (348)
+++|+.|++++|.+... +....+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|+
T Consensus 168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (487)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence 78899999998887543 444457889999999999884 55567888899999999999987 777788888999999
Q ss_pred CCCCccC-CccCchhhhhhcCCCeeecc
Q 035693 309 FSSNHFS-DPIPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 309 l~~n~l~-~~~~~~~~~~~~~L~~L~l~ 335 (348)
+++|++. +.+|..+. .++.|+.++++
T Consensus 244 l~~N~l~c~~~~~~~~-~l~~L~~l~~~ 270 (487)
T 3oja_A 244 LRGNGFHCGTLRDFFS-KNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCBCHHHHHHHHT-TCHHHHHHHHH
T ss_pred cCCCCCcCcchHHHHH-hCCCCcEEecc
Confidence 9999987 33443333 33566666665
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.1e-23 Score=178.90 Aligned_cols=224 Identities=19% Similarity=0.175 Sum_probs=174.5
Q ss_pred EeCCCCCCCCCCCCCC-CCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCC
Q 035693 81 LNLGFTLFYGFPMPSS-LPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNL 159 (348)
Q Consensus 81 L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 159 (348)
++..+..+.. +|.. .++|++|++++|.++. ..+.. +.++++|++|++++|++....+ ..+..+++|
T Consensus 12 ~~c~~~~l~~--ip~~l~~~l~~L~ls~n~l~~------~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L 78 (276)
T 2z62_A 12 YQCMELNFYK--IPDNLPFSTKNLDLSFNPLRH------LGSYS--FFSFPELQVLDLSRCEIQTIED---GAYQSLSHL 78 (276)
T ss_dssp EECTTSCCSS--CCSSSCTTCCEEECTTCCCCE------ECTTT--TTTCTTCSEEECTTCCCCEECT---TTTTTCTTC
T ss_pred EEecCCCccc--cCCCCCCCccEEECCCCcccc------cCHhH--hccccCCcEEECCCCcCCccCH---HHccCCcCC
Confidence 3444444444 4553 3579999999998742 22223 7889999999999999987665 467889999
Q ss_pred cEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCC-cccccccCCCCccEEEcc
Q 035693 160 QVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHG-KFPEKVLQVPTLETLDLS 238 (348)
Q Consensus 160 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~ 238 (348)
++|++++|.+.+..+..+..+++|++|++++|. .....+..+..+++|++|++++|.+.. .+|..+..+++|++|+++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 999999999998777889999999999999984 443444467889999999999999875 368889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCc----EEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693 239 YNSLLQGSLPHFPKNSSLR----NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 239 ~~~l~~~~~~~~~~~~~L~----~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 314 (348)
+|.+.......+..++.|+ +|++++|.+.+..+..+ ...+|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 9988665555555545555 89999999984434333 345899999999999986666678899999999999999
Q ss_pred CCccC
Q 035693 315 SDPIP 319 (348)
Q Consensus 315 ~~~~~ 319 (348)
.+..+
T Consensus 237 ~c~c~ 241 (276)
T 2z62_A 237 DCSCP 241 (276)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 88654
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.1e-23 Score=180.36 Aligned_cols=227 Identities=21% Similarity=0.150 Sum_probs=154.6
Q ss_pred ccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693 75 LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154 (348)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 154 (348)
+..+..+++..+.+.+......+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+.
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-------~~---~l~~l~~L~~L~l~~n~l~~~-----~~l~ 82 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-------VQ---GIQYLPNVRYLALGGNKLHDI-----SALK 82 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-------CT---TGGGCTTCCEEECTTSCCCCC-----GGGT
T ss_pred HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc-------cc---ccccCCCCcEEECCCCCCCCc-----hhhc
Confidence 34444555555555543112266677777777665421 11 256677777777777777653 2466
Q ss_pred CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234 (348)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 234 (348)
.+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 77778888888877777666666777788888888773 44444555677778888888888777555555677788888
Q ss_pred EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693 235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 314 (348)
|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.|+.++++.|.+
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 8888887765555556677888888888888876666667777888888888887754 345677888888888
Q ss_pred CCccCchhhh
Q 035693 315 SDPIPTLRLY 324 (348)
Q Consensus 315 ~~~~~~~~~~ 324 (348)
.|.+|..+..
T Consensus 235 ~g~ip~~~~~ 244 (272)
T 3rfs_A 235 SGVVRNSAGS 244 (272)
T ss_dssp GGGBBCTTSC
T ss_pred CCcccCcccc
Confidence 8777766543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.1e-22 Score=176.13 Aligned_cols=206 Identities=24% Similarity=0.266 Sum_probs=162.2
Q ss_pred cccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693 76 QYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM 153 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 153 (348)
++|+.|++++|.+++... ...+++|++|++++|.+.. ..+.. +.++++|++|++++|++....+ ..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGA--YQSLSHLSTLILTGNPIQSLAL---GAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------ECTTT--TTTCTTCCEEECTTCCCCEECT---TTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------cCHHH--ccCCcCCCEEECCCCccCccCh---hhh
Confidence 579999999999987632 1278999999999998642 22223 7889999999999999887665 467
Q ss_pred CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE 233 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 233 (348)
..+++|++|++++|.+.+..+..+..+++|++|++++|......++..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 88999999999999988866657888999999999999554434678889999999999999998865555565555555
Q ss_pred ----EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693 234 ----TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293 (348)
Q Consensus 234 ----~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ 293 (348)
+|++++|.+.......+. ..+|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 899999987654444443 34899999999999865555678889999999999999863
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.1e-24 Score=198.48 Aligned_cols=235 Identities=20% Similarity=0.148 Sum_probs=194.5
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN 128 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
++|++|+|++| .+.+..|. .+..+++|+.|++++|.+++..-...+++|++|++++|.++. +..
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-------------l~~ 97 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAA--DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-------------LLV 97 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGG--GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-------------EEE
T ss_pred CCccEEEeeCC-cCCCCCHH--HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-------------CCC
Confidence 48999999999 88776655 789999999999999999875333489999999999997531 334
Q ss_pred CCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh-cCCC
Q 035693 129 LTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA-NLLN 207 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~ 207 (348)
.++|+.|++++|.+..... ..+++|++|++++|.+++..+..+..+++|+.|++++|. +.+..+..+. .+++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDT 170 (487)
T ss_dssp CTTCCEEECCSSCCCCEEE------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTT
T ss_pred CCCcCEEECcCCcCCCCCc------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCc
Confidence 5899999999999987654 346899999999999999878888999999999999994 4544555554 7899
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
|++|++++|.+.+. + ....+++|+.|++++|.+... ++.+..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 171 L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred ccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCC
Confidence 99999999999854 3 244689999999999987643 344777899999999999998 5787888899999999999
Q ss_pred CccC-CCCcccccCCCCCCEEeCC
Q 035693 288 CNFT-RPIPTSMANLTQLFHLDFS 310 (348)
Q Consensus 288 n~l~-~~~~~~l~~~~~L~~L~l~ 310 (348)
|.+. +.+|..+..++.|+.+++.
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 9998 4566777777777777775
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.4e-22 Score=169.79 Aligned_cols=185 Identities=23% Similarity=0.280 Sum_probs=157.5
Q ss_pred CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 209 (348)
++|+.|++++|++....+ ..+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS---KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSCCCT---TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCCeeCH---HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCC
Confidence 467888888888776654 467889999999999999988666677889999999999994 4445556778899999
Q ss_pred EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693 210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289 (348)
Q Consensus 210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~ 289 (348)
+|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 99999999987666778899999999999999876666668889999999999999986666678889999999999999
Q ss_pred cCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693 290 FTRPIPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 290 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
+....+..+..+++|+.|++++|++.+..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 99866667888999999999999987654
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.8e-24 Score=195.34 Aligned_cols=264 Identities=17% Similarity=0.124 Sum_probs=171.7
Q ss_pred ccccccccCEEeCCCCCCCCCCC------CCCCCCCcEEecCCCCCCCCcceeecCCCh-----hhhcCCCCCcEEEccC
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPM------PSSLPRLVTLDLSSREPISGFSWRLEIPNF-----NFFQNLTELRELYLDN 139 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~ 139 (348)
.+..+++|+.|++++|.+++... ...+++|++|++++|.+... ...+|.. ..+..+++|++|++++
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l---~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV---KDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC---GGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc---ccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 67788999999999998876421 22688888998888754211 1122221 2246778888888888
Q ss_pred cCCCCcchh-hhhhhCCCCCCcEEEccCccCCCcchH----Hhhhc---------cCCCEEEcccCCCCCCChh---hhh
Q 035693 140 VDLSGRRTE-WCKAMSFLPNLQVLNLSNCLLSDPINH----HLANL---------LSLSVIRLRDNHAVSCQVP---EFV 202 (348)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~---------~~L~~L~l~~~~~~~~~~~---~~l 202 (348)
|.+...... ++..+..+++|++|++++|.+....+. .+..+ ++|++|++++|.......+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 888764332 334567788888888888887643333 33344 7888888888854333344 456
Q ss_pred hcCCCCCEEEccCCcCCC-----cccccccCCCCccEEEccCCCCCC----CCCCCCCCCCCCcEEEcccCCCCCC----
Q 035693 203 ANLLNLTTLDLSQCDLHG-----KFPEKVLQVPTLETLDLSYNSLLQ----GSLPHFPKNSSLRNLNLKNTSFSGK---- 269 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~ls~n~~~~~---- 269 (348)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 677888888888887762 223356677888888888887642 1123345567788888888877643
Q ss_pred CCcccc--CCCCCCEEeecCCccCC----CCcccc-cCCCCCCEEeCCCCccCCccC--chhhhhhcCCCeeecccC
Q 035693 270 LPDSIG--NLENLASVDVSSCNFTR----PIPTSM-ANLTQLFHLDFSSNHFSDPIP--TLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 270 ~~~~l~--~~~~L~~L~L~~n~l~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~l~~n 337 (348)
++..+. .+++|++|++++|.+.. .+|..+ .++++|+.|++++|++.+..+ ..+...+++++.+++...
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 344442 36778888888888776 355555 446788888888888876553 334444455555555443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.7e-22 Score=171.97 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=159.9
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
.+++|++++++++.++ .+|.. + .+.++.|++++|.+....+ ..+..+++|++|++++|.++...+.
T Consensus 8 ~l~~l~~l~~~~~~l~-------~ip~~--~--~~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-------ALPPD--L--PKDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSCCS-------SCCSC--C--CTTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCEEECC
T ss_pred ccCCccEEECCCCCCC-------cCCCC--C--CCCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCCccCcccCC
Confidence 5678999999988764 33432 2 2578999999999887665 5678889999999999988874332
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
..+++|++|++++|... .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++
T Consensus 74 --~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp --SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred --CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 67788999999988543 45666778889999999999888655567888899999999999887666666777889
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
|+.|++++|++++..+..+..+++|+.|++++|.+.. +|..+...++|+.+++++|++.+.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence 9999999999885545566778899999999999986 677777778899999999988764
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.6e-21 Score=166.05 Aligned_cols=204 Identities=20% Similarity=0.159 Sum_probs=172.6
Q ss_pred ccccccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhh
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEW 149 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 149 (348)
.+.++++++.++++++.++. +|. -.+++++|++++|.+.. ..+. .+.++++|+.|++++|.++....
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~~~l~~L~L~~N~l~~------~~~~--~~~~l~~L~~L~L~~n~l~~~~~-- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLPKDTTILHLSENLLYT------FSLA--TLMPYTRLTQLNLDRAELTKLQV-- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCCTTCCEEECTTSCCSE------EEGG--GGTTCTTCCEEECTTSCCCEEEC--
T ss_pred cccccCCccEEECCCCCCCc--CCCCCCCCCCEEEcCCCcCCc------cCHH--HhhcCCCCCEEECCCCccCcccC--
Confidence 46789999999999999987 454 45789999999998742 2233 37889999999999999987654
Q ss_pred hhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCC
Q 035693 150 CKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQV 229 (348)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 229 (348)
...+++|++|++++|.+.. +|..+..+++|++|++++|+ ++...+..|..+++|++|++++|.+....+..+..+
T Consensus 73 ---~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 73 ---DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp ---CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ---CCCCCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence 3788999999999999986 67778889999999999994 454555778899999999999999986656667889
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 230 PTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 230 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
++|+.|++++|++.......+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99999999999987666666778999999999999998 778877778899999999999874
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=177.40 Aligned_cols=201 Identities=21% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCcEEEccCcCCCCcchhhhhhh--CCCCCCcEEEccCccCCCcch----HHhhhccCCCEEEcccCCCCCCChhhhhhc
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAM--SFLPNLQVLNLSNCLLSDPIN----HHLANLLSLSVIRLRDNHAVSCQVPEFVAN 204 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 204 (348)
+|++|++++|.+.+..+ ..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +....+..+..
T Consensus 92 ~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLKITGTMP---PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA 167 (310)
T ss_dssp CCCEEEEESCCCBSCCC---CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred ceeEEEeeCCEeccchh---hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc
Confidence 35555555554443332 122 344455555555554443211 222334455555555552 22233344445
Q ss_pred CCCCCEEEccCCcCCCc--cc--ccccCCCCccEEEccCCCCCCCCC--C-CCCCCCCCcEEEcccCCCCCCCCccccCC
Q 035693 205 LLNLTTLDLSQCDLHGK--FP--EKVLQVPTLETLDLSYNSLLQGSL--P-HFPKNSSLRNLNLKNTSFSGKLPDSIGNL 277 (348)
Q Consensus 205 l~~L~~L~l~~~~~~~~--~~--~~l~~~~~L~~L~l~~~~l~~~~~--~-~~~~~~~L~~L~ls~n~~~~~~~~~l~~~ 277 (348)
+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+..... . .+..+++|++|++++|.+.+..|..+..+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 55555555555544321 11 112344555555555554421100 0 01234556666666666554444444433
Q ss_pred ---CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 278 ---ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 278 ---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
++|++|++++|++.. +|..+. ++|+.|++++|++.+ +|. ...+++|++|++++|++++
T Consensus 248 ~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence 466666666666664 444432 566666666666655 232 1233666666666666653
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=5.9e-23 Score=186.55 Aligned_cols=258 Identities=17% Similarity=0.176 Sum_probs=184.6
Q ss_pred CCEEEEeCCCCccccccccCC--cccccccccCEEeCCCCCCCCCC--CC----------CCCCCCcEEecCCCCCCCCc
Q 035693 49 GHVIGLDLSAEPILIGSLENA--SGLFSLQYLQSLNLGFTLFYGFP--MP----------SSLPRLVTLDLSSREPISGF 114 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~----------~~~~~L~~L~l~~~~~~~~~ 114 (348)
++|++|+|++| .+.+..+.. ..+.++++|+.|++++|.+.... +| ..+++|++|++++|.+....
T Consensus 32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 57999999999 776543320 14678999999999987554321 23 27899999999999875311
Q ss_pred ceeecCCChhhhcCCCCCcEEEccCcCCCCcchh-hhhhhCCC---------CCCcEEEccCccCCC-cch---HHhhhc
Q 035693 115 SWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTE-WCKAMSFL---------PNLQVLNLSNCLLSD-PIN---HHLANL 180 (348)
Q Consensus 115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~ 180 (348)
. ..++ ..+..+++|++|++++|.++...+. +...+..+ ++|++|++++|.++. .++ ..+..+
T Consensus 111 ~--~~l~--~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 111 Q--EPLI--DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp H--HHHH--HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred H--HHHH--HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 0 0122 2378899999999999998654432 22234444 899999999999973 344 467788
Q ss_pred cCCCEEEcccCCCCCCC---hhh-hhhcCCCCCEEEccCCcCC----CcccccccCCCCccEEEccCCCCCCCCC----C
Q 035693 181 LSLSVIRLRDNHAVSCQ---VPE-FVANLLNLTTLDLSQCDLH----GKFPEKVLQVPTLETLDLSYNSLLQGSL----P 248 (348)
Q Consensus 181 ~~L~~L~l~~~~~~~~~---~~~-~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~ 248 (348)
++|++|++++|.+.... +.. .+..+++|++|++++|.+. ..++..+..+++|+.|++++|.+..... .
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 99999999999543211 223 6778999999999999985 4677788899999999999998755422 2
Q ss_pred CC--CCCCCCcEEEcccCCCCC----CCCccc-cCCCCCCEEeecCCccCCCCc--ccc-cCCCCCCEEeCCC
Q 035693 249 HF--PKNSSLRNLNLKNTSFSG----KLPDSI-GNLENLASVDVSSCNFTRPIP--TSM-ANLTQLFHLDFSS 311 (348)
Q Consensus 249 ~~--~~~~~L~~L~ls~n~~~~----~~~~~l-~~~~~L~~L~L~~n~l~~~~~--~~l-~~~~~L~~L~l~~ 311 (348)
.+ ..+++|++|++++|.+++ .++..+ ..+++|+.|++++|.+.+..+ ..+ ..+++++.+.+..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 23 337899999999999985 366666 567999999999999997553 222 2234444444444
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=175.08 Aligned_cols=229 Identities=21% Similarity=0.247 Sum_probs=177.1
Q ss_pred cccccCEEeCCCCCCCCCCCCC-----CCCCCcEEecCCCCCCCCcceeecCCChhhh--cCCCCCcEEEccCcCCCCcc
Q 035693 74 SLQYLQSLNLGFTLFYGFPMPS-----SLPRLVTLDLSSREPISGFSWRLEIPNFNFF--QNLTELRELYLDNVDLSGRR 146 (348)
Q Consensus 74 ~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~ 146 (348)
+...++.+.+.+..++...+.. .+++|++|++++|.+.. ..+.. + ..+++|++|++++|.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~--~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG------TMPPL--PLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS------CCCCC--SSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc------chhhh--hhhccCCCCCEEEeecccccchh
Confidence 3445788888887765532222 56779999999998742 33333 4 78999999999999998754
Q ss_pred hhhh-hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCC-h--hhhhhcCCCCCEEEccCCcCCCcc
Q 035693 147 TEWC-KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQ-V--PEFVANLLNLTTLDLSQCDLHGKF 222 (348)
Q Consensus 147 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~--~~~l~~l~~L~~L~l~~~~~~~~~ 222 (348)
+... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|+..... . ...+..+++|++|++++|.++ .+
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 212 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP 212 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence 3221 34567899999999999999878888999999999999999543211 1 122467889999999999987 33
Q ss_pred cc----cccCCCCccEEEccCCCCCCCCCCCCCCC---CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc
Q 035693 223 PE----KVLQVPTLETLDLSYNSLLQGSLPHFPKN---SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP 295 (348)
Q Consensus 223 ~~----~l~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 295 (348)
+. .+..+++|++|++++|.+....++.+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++.+ +|
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~ 288 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP 288 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc
Confidence 33 24678999999999999876655555554 79999999999999 6777664 799999999999998 34
Q ss_pred ccccCCCCCCEEeCCCCccCC
Q 035693 296 TSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 296 ~~l~~~~~L~~L~l~~n~l~~ 316 (348)
. +..+++|+.|++++|++++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 5778999999999999976
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=9.4e-21 Score=166.61 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=167.7
Q ss_pred cccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC
Q 035693 76 QYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF 155 (348)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 155 (348)
..+..+.+..+.+.+......+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-------~l~---~~~~l~~L~~L~L~~n~i~~~~~-----~~~ 83 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-------TIE---GVQYLNNLIGLELKDNQITDLAP-----LKN 83 (308)
T ss_dssp HHHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-------CCT---TGGGCTTCCEEECCSSCCCCCGG-----GTT
T ss_pred HHHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCcc-------Cch---hhhccCCCCEEEccCCcCCCChh-----Hcc
Confidence 334444566666666412227899999999999764 233 27889999999999999887553 788
Q ss_pred CCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEE
Q 035693 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235 (348)
Q Consensus 156 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 235 (348)
+++|++|++++|.+.+. + .+..+++|++|++++|.. .. ++ .+..+++|++|++++|.+.+. +. +..+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l-~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L 156 (308)
T 1h6u_A 84 LTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQI-TD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYL 156 (308)
T ss_dssp CCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCC-CC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCC-CC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEE
Confidence 99999999999998873 3 688899999999999954 33 22 378899999999999998743 33 7788999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccC
Q 035693 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFS 315 (348)
Q Consensus 236 ~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 315 (348)
++++|.+.. .+.+..+++|+.|++++|.+++ ++. +..+++|++|++++|++.+.. .+..+++|+.|++++|++.
T Consensus 157 ~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 157 SIGNAQVSD--LTPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EccCCcCCC--ChhhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 999998754 3337778999999999999984 333 778899999999999998844 3788899999999999997
Q ss_pred C
Q 035693 316 D 316 (348)
Q Consensus 316 ~ 316 (348)
+
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 6
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.9e-20 Score=159.81 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=123.1
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 210 (348)
..++++++++.+...+.. + .+++++|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~----~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG----I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCSSCCSC----C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred CCeEEecCCCCccccCCC----C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCE
Confidence 455666666666554431 1 246777777777777666666677777777777776 334444555667777777
Q ss_pred EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCcc
Q 035693 211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNF 290 (348)
Q Consensus 211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l 290 (348)
|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 77777777655555566777777777777776655445566677788888888877755455677777888888888888
Q ss_pred CCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 291 TRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 291 ~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
.+..+..+..+++|+.|++++|++.+.
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 776666677777888888888887764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5e-22 Score=178.86 Aligned_cols=259 Identities=17% Similarity=0.179 Sum_probs=180.6
Q ss_pred EEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---C---CCC-CCcEEecCCCCCCCCcceeecCCCh--
Q 035693 53 GLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---S---SLP-RLVTLDLSSREPISGFSWRLEIPNF-- 123 (348)
Q Consensus 53 ~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~---~~~-~L~~L~l~~~~~~~~~~~~~~~~~~-- 123 (348)
.++++.+ .+.+.+|. .+...++|+.|++++|.+++.+.. . .++ +|++|++++|.++.. .+..
T Consensus 2 ~~~ls~n-~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK------NSDELV 72 (362)
T ss_dssp EEECCCC-TTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS------CHHHHH
T ss_pred ccccccc-cchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH------HHHHHH
Confidence 4577888 77777774 445556699999999998886321 1 677 899999999976421 1111
Q ss_pred hhhcCC-CCCcEEEccCcCCCCcchh-hhhhhCCC-CCCcEEEccCccCCCcchHHhhh-----ccCCCEEEcccCCCCC
Q 035693 124 NFFQNL-TELRELYLDNVDLSGRRTE-WCKAMSFL-PNLQVLNLSNCLLSDPINHHLAN-----LLSLSVIRLRDNHAVS 195 (348)
Q Consensus 124 ~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~ 195 (348)
..+... ++|++|++++|++++..+. +...+..+ ++|++|++++|.+++..+..+.. ..+|++|++++|....
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 112333 8999999999998866553 22335555 78999999999988765555433 3589999999985432
Q ss_pred C---ChhhhhhcCC-CCCEEEccCCcCCCcccc----cccCC-CCccEEEccCCCCCCCCCCCCCC-----CCCCcEEEc
Q 035693 196 C---QVPEFVANLL-NLTTLDLSQCDLHGKFPE----KVLQV-PTLETLDLSYNSLLQGSLPHFPK-----NSSLRNLNL 261 (348)
Q Consensus 196 ~---~~~~~l~~l~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l 261 (348)
. .+...+...+ +|++|++++|.+.+..+. .+... ++|++|++++|.+.......+.. .++|++|++
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 2 2334455665 899999999988765543 34445 58999999999886654443322 358999999
Q ss_pred ccCCCCCCCC----ccccCCCCCCEEeecCCccCCC-------CcccccCCCCCCEEeCCCCccCCccCc
Q 035693 262 KNTSFSGKLP----DSIGNLENLASVDVSSCNFTRP-------IPTSMANLTQLFHLDFSSNHFSDPIPT 320 (348)
Q Consensus 262 s~n~~~~~~~----~~l~~~~~L~~L~L~~n~l~~~-------~~~~l~~~~~L~~L~l~~n~l~~~~~~ 320 (348)
++|.+.+..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 9999885433 2345678899999999985542 333566778899999999998875333
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=4.8e-20 Score=175.97 Aligned_cols=229 Identities=23% Similarity=0.247 Sum_probs=159.2
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCCh-----
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNF----- 123 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----- 123 (348)
+++++|++++| .+. .+|. .+++|+.|++++|.+++ +|..+++|++|++++|.++. ++..
T Consensus 61 ~~L~~L~L~~N-~l~-~lp~-----~l~~L~~L~Ls~N~l~~--lp~~l~~L~~L~Ls~N~l~~-------l~~~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDN-NLT-SLPA-----LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTH-------LPALPSGLC 124 (622)
T ss_dssp TTCSEEEECSC-CCS-CCCC-----CCTTCCEEEECSCCCSC--CCCCCTTCCEEEECSCCCCC-------CCCCCTTCC
T ss_pred CCCcEEEecCC-CCC-CCCC-----cCCCCCEEEcCCCcCCc--CCCCCCCCCEEECcCCcCCC-------CCCCCCCcC
Confidence 57888888888 665 4443 46788888888888776 55577888888888877642 1110
Q ss_pred ----------hhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693 124 ----------NFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193 (348)
Q Consensus 124 ----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 193 (348)
..-..+++|++|++++|.++..+. ...+|+.|++++|.++. +| ..+++|+.|++++|..
T Consensus 125 ~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 125 KLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCC
Confidence 000112444555555544443221 22445555555555554 23 3347899999999854
Q ss_pred CCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCcc
Q 035693 194 VSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDS 273 (348)
Q Consensus 194 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 273 (348)
.. ++. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+.. ++ ..+++|++|++++|.++ .+|.
T Consensus 194 ~~--l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~--lp--~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 194 AS--LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS--LP--VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp SC--CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC--CC--CCCTTCCEEECCSSCCS-CCCC-
T ss_pred CC--CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc--CC--CCCCcCcEEECCCCCCC-cCCc-
Confidence 32 222 3478999999999987 4554 34789999999998754 33 34689999999999998 5665
Q ss_pred ccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchh
Q 035693 274 IGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLR 322 (348)
Q Consensus 274 l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 322 (348)
.+++|+.|++++|.+.. +|..+..+++|+.|++++|++.+..+..+
T Consensus 259 --~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp --CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred --ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 56899999999999996 78889999999999999999988666543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.8e-22 Score=179.60 Aligned_cols=257 Identities=18% Similarity=0.185 Sum_probs=183.3
Q ss_pred EEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCC-CCcEEEccCcCCCCcchhh-hhhhC
Q 035693 80 SLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLT-ELRELYLDNVDLSGRRTEW-CKAMS 154 (348)
Q Consensus 80 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~-~~~~~ 154 (348)
..+++++.+++. ++. ..++|++|++++|.++..... . -.+.+..++ +|++|++++|.+++..+.. ...+.
T Consensus 2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTV--E--LIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHH--H--HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHH--H--HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 356778888775 554 455699999999986421100 0 003477888 9999999999998765532 22333
Q ss_pred CC-CCCcEEEccCccCCCcchHHhhh----c-cCCCEEEcccCCCCCCChhhh----hhc-CCCCCEEEccCCcCCCc--
Q 035693 155 FL-PNLQVLNLSNCLLSDPINHHLAN----L-LSLSVIRLRDNHAVSCQVPEF----VAN-LLNLTTLDLSQCDLHGK-- 221 (348)
Q Consensus 155 ~~-~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~-- 221 (348)
.. ++|++|++++|.+++..+..+.. + ++|++|++++|.. ....... +.. ..+|++|++++|.+.+.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 33 89999999999998766665444 4 8999999999954 4333333 344 36999999999998753
Q ss_pred --ccccccCCC-CccEEEccCCCCCCCCCCCCC----CC-CCCcEEEcccCCCCCC----CCccccC-CCCCCEEeecCC
Q 035693 222 --FPEKVLQVP-TLETLDLSYNSLLQGSLPHFP----KN-SSLRNLNLKNTSFSGK----LPDSIGN-LENLASVDVSSC 288 (348)
Q Consensus 222 --~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~L~ls~n~~~~~----~~~~l~~-~~~L~~L~L~~n 288 (348)
++..+...+ +|++|++++|.+.......+. .. ++|++|++++|.+.+. ++..+.. .++|++|++++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 334445555 999999999998666554333 34 5999999999998853 3444544 459999999999
Q ss_pred ccCCCCc----ccccCCCCCCEEeCCCCccCCccCch------hhhhhcCCCeeecccCccccc
Q 035693 289 NFTRPIP----TSMANLTQLFHLDFSSNHFSDPIPTL------RLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 289 ~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~L~~L~l~~n~l~g~ 342 (348)
.+.+..+ ..+..+++|+.|++++|.+.+..+.. .+...++|++||+++|++.+.
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9988544 34467789999999999965422221 122336799999999999765
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-21 Score=173.70 Aligned_cols=233 Identities=20% Similarity=0.253 Sum_probs=172.7
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCC---CCCCCCcEEecCCCCCCCCcceeecCCChhh
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMP---SSLPRLVTLDLSSREPISGFSWRLEIPNFNF 125 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 125 (348)
.+++.|+++++ .+.+..+ .+.++++|+.|++++|.+++..++ ..+++|++|++++|.+++ ..+. .
T Consensus 70 ~~l~~L~l~~n-~l~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~------~~~~--~ 137 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLA---EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD------PIVN--T 137 (336)
T ss_dssp TTCSEEECTTC-EECSCCC---SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH------HHHH--H
T ss_pred ccceEEEcCCc-cccccch---hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH------HHHH--H
Confidence 57899999999 7776655 466899999999999987654233 388999999999997532 2222 3
Q ss_pred hcCCCCCcEEEccCc-CCCCcchhhhhhhCCCCCCcEEEccCc-cCCCc-chHHhhhcc-CCCEEEcccCC-CCC-CChh
Q 035693 126 FQNLTELRELYLDNV-DLSGRRTEWCKAMSFLPNLQVLNLSNC-LLSDP-INHHLANLL-SLSVIRLRDNH-AVS-CQVP 199 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~-~~~-~~~~ 199 (348)
+..+++|++|++++| .+++.. +...+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ..+ ..++
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHH--HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHH--HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 778999999999999 565421 2244677899999999999 88764 577788899 99999999984 222 4566
Q ss_pred hhhhcCCCCCEEEccCCc-CCCcccccccCCCCccEEEccCCC-CCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCC
Q 035693 200 EFVANLLNLTTLDLSQCD-LHGKFPEKVLQVPTLETLDLSYNS-LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNL 277 (348)
Q Consensus 200 ~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~ 277 (348)
..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++.. .+..+
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l 291 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLL 291 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHH
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHH
Confidence 777889999999999998 666677788889999999999984 33333345666888999999888 4422 22222
Q ss_pred -CCCCEEeecCCccCCCCccccc
Q 035693 278 -ENLASVDVSSCNFTRPIPTSMA 299 (348)
Q Consensus 278 -~~L~~L~L~~n~l~~~~~~~l~ 299 (348)
..+..|++++|.+++..|..+.
T Consensus 292 ~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 292 KEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp HHHSTTSEESCCCSCCTTCSSCS
T ss_pred HhhCcceEEecccCccccCCccc
Confidence 2466666888888886666554
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=5.9e-20 Score=156.74 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=153.9
Q ss_pred CCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEE
Q 035693 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLD 236 (348)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 236 (348)
...++++++++.+.. +|..+. +.++.|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 357889999998886 554443 689999999994 5555667788999999999999999977777789999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 237 LSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 237 l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
+++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999876666778889999999999999996656667889999999999999998666678899999999999999987
Q ss_pred ccCchhhhhhcCCCeeecccCccccc
Q 035693 317 PIPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 317 ~~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
++...+..+++|++|++++|++++.
T Consensus 170 -~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 -VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5544445568999999999999865
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=6.7e-22 Score=189.43 Aligned_cols=286 Identities=16% Similarity=0.133 Sum_probs=186.9
Q ss_pred CCEEEEeCCCCcccccc----ccCCcccccccccCEEeCCCCCCCCCC---CCC---CCCCCcEEecCCCCCCCCc----
Q 035693 49 GHVIGLDLSAEPILIGS----LENASGLFSLQYLQSLNLGFTLFYGFP---MPS---SLPRLVTLDLSSREPISGF---- 114 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~~~---- 114 (348)
++|++|+|++| .+.+. ++. .+.++++|+.|++++|.+++.. ++. .+++|++|++++|.+....
T Consensus 164 ~~L~~L~L~~~-~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 164 RKIKTLLMEES-SFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp TTCSEEECTTC-EEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred CCCCEEECccc-cccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 56777777777 54332 221 3346677777777776665321 111 5666666666665432100
Q ss_pred ------c---------------------------------eeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCC
Q 035693 115 ------S---------------------------------WRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSF 155 (348)
Q Consensus 115 ------~---------------------------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 155 (348)
. ....++. .+..+++|++|++++|.+++... ...+..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDH--CTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHH--HHHHTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHH--HHHHHh
Confidence 0 0011122 25678889999999988654322 234678
Q ss_pred CCCCcEEEccCccCCCc-chHHhhhccCCCEEEccc----------CCCCCC-ChhhhhhcCCCCCEEEccCCcCCCccc
Q 035693 156 LPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRD----------NHAVSC-QVPEFVANLLNLTTLDLSQCDLHGKFP 223 (348)
Q Consensus 156 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~----------~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~ 223 (348)
+++|++|+++ +.+.+. ++.....+++|++|++++ +...+. .+......+++|++|++..+.+++..+
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 8999999998 444332 444556788999999994 433433 233445678999999998888876666
Q ss_pred ccccC-CCCccEEEcc----CCCCCCCC----CCC-CCCCCCCcEEEcccCC--CCCCCCcccc-CCCCCCEEeecCCcc
Q 035693 224 EKVLQ-VPTLETLDLS----YNSLLQGS----LPH-FPKNSSLRNLNLKNTS--FSGKLPDSIG-NLENLASVDVSSCNF 290 (348)
Q Consensus 224 ~~l~~-~~~L~~L~l~----~~~l~~~~----~~~-~~~~~~L~~L~ls~n~--~~~~~~~~l~-~~~~L~~L~L~~n~l 290 (348)
..+.. +++|+.|+++ .+.++... ++. +..+++|++|+++.|. +++.....+. .+++|+.|++++|++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 66655 8899999997 33343221 111 2337899999997654 5433333333 478999999999999
Q ss_pred CC-CCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693 291 TR-PIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 291 ~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
++ .++..+..+++|+.|++++|++++.....+...+++|++|+|++|++++.
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 86 34555678899999999999987654445555669999999999999864
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=9.7e-20 Score=160.12 Aligned_cols=195 Identities=23% Similarity=0.264 Sum_probs=111.2
Q ss_pred cccccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhh
Q 035693 72 LFSLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCK 151 (348)
Q Consensus 72 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 151 (348)
...+++|+.|+++++.+........+++|++|++++|.+.. ++. +..+++|++|++++|.+.+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-------~~~---~~~l~~L~~L~L~~n~l~~~~----- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-------LAP---LKNLTKITELELSGNPLKNVS----- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-------CGG---GTTCCSCCEEECCSCCCSCCG-----
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-------Chh---HccCCCCCEEEccCCcCCCch-----
Confidence 34556666666666655553222255666666666665431 111 455666666666666665432
Q ss_pred hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 035693 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPT 231 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 231 (348)
.+..+++|++|++++|.+.+. + .+..+++|++|++++|.. ... + .+..+++|++|++++|.+.+ .+. +..+++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l-~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 174 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI-TNI-S-PLAGLTNLQYLSIGNAQVSD-LTP-LANLSK 174 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC-CCC-G-GGGGCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc-CcC-c-cccCCCCccEEEccCCcCCC-Chh-hcCCCC
Confidence 355666666666666666652 2 256666666666666632 221 1 15566666666666666653 222 566666
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
|+.|++++|.+... +.+..+++|++|++++|.+.+. + .+..+++|+.|++++|++..
T Consensus 175 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcC--hhhcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence 66666666665322 2255566677777777766633 2 25566677777777776655
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.1e-20 Score=160.10 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=93.3
Q ss_pred hCCCCCCcEEEccCcc-CCCcchHHhhhccCCCEEEccc-CCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693 153 MSFLPNLQVLNLSNCL-LSDPINHHLANLLSLSVIRLRD-NHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP 230 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 230 (348)
+..+++|++|++++|. ++...+..+..+++|++|++++ | .++...+..+..+++|++|++++|.+.+ +|. +..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 3344444444444443 3333333444444444454444 3 2222222334455555555555555542 333 44555
Q ss_pred Ccc---EEEccCC-CCCCCCCCCCCCCCCCc-EEEcccCCCCCCCCccccCCCCCCEEeecCCc-cCCCCcccccCC-CC
Q 035693 231 TLE---TLDLSYN-SLLQGSLPHFPKNSSLR-NLNLKNTSFSGKLPDSIGNLENLASVDVSSCN-FTRPIPTSMANL-TQ 303 (348)
Q Consensus 231 ~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~ 303 (348)
+|+ .|++++| .+.......|..+++|+ +|++++|.++ .+|......++|++|++++|+ +....+..+..+ ++
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 555 6666666 55444444455566666 6666666665 333322222567777777774 665445556666 67
Q ss_pred CCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 304 LFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 304 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
|+.|++++|++.+ +|.. ..++|+.|+++++
T Consensus 207 L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 207 PSLLDVSQTSVTA-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred CcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence 7777777777764 4443 2356777777665
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.2e-20 Score=155.89 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=98.5
Q ss_pred hcCCCCCcEEEccCcC-CCCcchhhhhhhCCCCCCcEEEccC-ccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhh
Q 035693 126 FQNLTELRELYLDNVD-LSGRRTEWCKAMSFLPNLQVLNLSN-CLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVA 203 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 203 (348)
+.++++|++|++++|+ ++...+ ..+..+++|++|++++ |.++...+..+..+++|++|++++|.. +. ++. +.
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~-lp~-~~ 124 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KM-FPD-LT 124 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECT---TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CS-CCC-CT
T ss_pred ccCCCCCcEEeCCCCCCcceeCH---hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-cc-ccc-cc
Confidence 4445555555555554 443332 2344555555555555 555544444455555566666655532 21 222 44
Q ss_pred cCCCCC---EEEccCC-cCCCcccccccCCCCcc-EEEccCCCCCCCCCCCCCCCCCCcEEEcccCC-CCCCCCccccCC
Q 035693 204 NLLNLT---TLDLSQC-DLHGKFPEKVLQVPTLE-TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTS-FSGKLPDSIGNL 277 (348)
Q Consensus 204 ~l~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~l~~~ 277 (348)
.+++|+ +|++++| .+....+..+..+++|+ .|++++|.+.......+.. ++|++|++++|+ +++..+..+..+
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 555555 6666666 55533333456666676 7777666654333333433 567777777774 653334456666
Q ss_pred -CCCCEEeecCCccCCCCcccccCCCCCCEEeCCCC
Q 035693 278 -ENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSN 312 (348)
Q Consensus 278 -~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 312 (348)
++|+.|++++|++.. +|.. .+++|+.|+++++
T Consensus 204 ~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred ccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 677777777777765 3332 4567777777665
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.1e-19 Score=148.77 Aligned_cols=175 Identities=18% Similarity=0.122 Sum_probs=89.0
Q ss_pred cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212 (348)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 212 (348)
+.++++++.++..+. ...++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCccCCCC------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEE
Confidence 456666666554432 123467777777776665444455666666666666663 2323333445555666666
Q ss_pred ccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
+++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 66665553333334455555555555555443333334445555555555555543333334444555555555554432
Q ss_pred CCcccccCCCCCCEEeCCCCccCCccCch
Q 035693 293 PIPTSMANLTQLFHLDFSSNHFSDPIPTL 321 (348)
Q Consensus 293 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 321 (348)
.+++|+.|+++.|.+.+.+|..
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred -------CCCCHHHHHHHHHhCCceeecc
Confidence 2234445555555555444443
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.1e-21 Score=185.93 Aligned_cols=282 Identities=10% Similarity=-0.013 Sum_probs=155.3
Q ss_pred CEEEEeCCCCccccc-cccCCcccccccccCEEeCCCCCCCCCCC------CCCCCCCcEEecCCCCCCCCcceeecCCC
Q 035693 50 HVIGLDLSAEPILIG-SLENASGLFSLQYLQSLNLGFTLFYGFPM------PSSLPRLVTLDLSSREPISGFSWRLEIPN 122 (348)
Q Consensus 50 ~l~~L~ls~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 122 (348)
+|++|++++|..+.. .++. .+.++++|+.|++++|.+++.+. +..+++|++|++++|.+.... ...++
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~- 213 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS--PKDLE- 213 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--HHHHH-
T ss_pred cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--HHHHH-
Confidence 499999999832221 2221 34589999999999998876531 227899999999999864110 01112
Q ss_pred hhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEcc---------------------------CccCCCcchH
Q 035693 123 FNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLS---------------------------NCLLSDPINH 175 (348)
Q Consensus 123 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~---------------------------~~~~~~~~~~ 175 (348)
..+.++++|+.|++++|.+.+.. ..+..+++|++|+++ ++. ...++.
T Consensus 214 -~~~~~~~~L~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~ 287 (592)
T 3ogk_B 214 -TIARNCRSLVSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPI 287 (592)
T ss_dssp -HHHHHCTTCCEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGG
T ss_pred -HHHhhCCCCcEEeccCccHHHHH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHH
Confidence 22567888888888887764422 222333333333332 111 111333
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcC------------------------CCCCEEEccC-----------CcCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANL------------------------LNLTTLDLSQ-----------CDLHG 220 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l------------------------~~L~~L~l~~-----------~~~~~ 220 (348)
.+..+++|++|++++|..........+..+ ++|++|++++ +.++.
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 444455555555555531111111223344 4455555542 22221
Q ss_pred c-ccccccCCCCccEEEccCCCCCCCCCCCCCC-CCCCcEEEcc----cCCCCCC-----CCccccCCCCCCEEeecCCc
Q 035693 221 K-FPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-NSSLRNLNLK----NTSFSGK-----LPDSIGNLENLASVDVSSCN 289 (348)
Q Consensus 221 ~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~ls----~n~~~~~-----~~~~l~~~~~L~~L~L~~n~ 289 (348)
. .......+++|++|++..+.++...+..+.. +++|++|+++ .+.+++. ++..+..+++|+.|++++|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 1 1111223455555555444443333333333 5667777775 3344422 12224456778888886543
Q ss_pred --cCCCCcccc-cCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693 290 --FTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 290 --l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
+++..+..+ ..+++|+.|++++|++++.....+...+++|++|+|++|.+++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 444333333 34788999999998887643334455568899999999988654
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=2.7e-20 Score=178.33 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=120.4
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCc-chHHhhhccCCCEEEccc--------CCCCCCCh
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDP-INHHLANLLSLSVIRLRD--------NHAVSCQV 198 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~--------~~~~~~~~ 198 (348)
.+++|++|++++|.+++.. +...+..+++|++|++.+| +.+. ++.....+++|++|++.+ +...+...
T Consensus 287 ~~~~L~~L~L~~~~l~~~~--l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCCCCHHH--HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCCCCHHH--HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3455555555555543211 1122345566666666655 2221 222223456677766632 11222211
Q ss_pred hhh-hhcCCCCCEEEccCCcCCCccccccc-CCCCccEEEcc--C----CCCCCCCC----CC-CCCCCCCcEEEcccCC
Q 035693 199 PEF-VANLLNLTTLDLSQCDLHGKFPEKVL-QVPTLETLDLS--Y----NSLLQGSL----PH-FPKNSSLRNLNLKNTS 265 (348)
Q Consensus 199 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~~~~~----~~-~~~~~~L~~L~ls~n~ 265 (348)
... ...+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.... .. +..+++|++|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 222 23466777776666666544444443 46788888887 2 22321111 11 23367888888876 4
Q ss_pred CCCCCCccccC-CCCCCEEeecCCccCCCCcccc-cCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccc
Q 035693 266 FSGKLPDSIGN-LENLASVDVSSCNFTRPIPTSM-ANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 266 ~~~~~~~~l~~-~~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.........+++|++|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 54333334443 7889999999999876444444 568899999999999865444444555689999999999875
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.4e-18 Score=141.52 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCC
Q 035693 130 TELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLT 209 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 209 (348)
++|++|++++|++....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN---GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcCCh---hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 345555555555554333 234445555555555555554333444555555555555552 2222333344555555
Q ss_pred EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCc
Q 035693 210 TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCN 289 (348)
Q Consensus 210 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~ 289 (348)
+|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+.+ .+++|+.|++..|.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 176 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHh
Confidence 55555555553333334455555555555555443333334445555555555554431 23345555555555
Q ss_pred cCCCCcccccC
Q 035693 290 FTRPIPTSMAN 300 (348)
Q Consensus 290 l~~~~~~~l~~ 300 (348)
+.+.+|..++.
T Consensus 177 ~~g~ip~~~~~ 187 (208)
T 2o6s_A 177 HSGVVRNSAGS 187 (208)
T ss_dssp CTTTBBCTTSS
T ss_pred CCceeeccCcc
Confidence 55555544443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.9e-18 Score=147.48 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=138.1
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+..+++|+.|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.. .. ...+..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~--~~~l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-KD--LSSLKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CC--GGGGTTC
T ss_pred hhhcCcccEEEccCCCcccCh-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-CC--ChhhccC
Confidence 567888999999999887653 36778899999999999887544 88889999999999843 32 3347888
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEee
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDV 285 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L 285 (348)
++|++|++++|.+.+ + ..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 899999999998874 3 4577888999999999887543 566778889999999998885433 778889999999
Q ss_pred cCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 286 SSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 286 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9998887 44 37788899999999998876
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=3.3e-20 Score=177.76 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=66.8
Q ss_pred CCCccEEEccCCCCCCCCCCCCC-CCCCCcEEEcc--c----CCCCCCC-----CccccCCCCCCEEeecCCccCCCCcc
Q 035693 229 VPTLETLDLSYNSLLQGSLPHFP-KNSSLRNLNLK--N----TSFSGKL-----PDSIGNLENLASVDVSSCNFTRPIPT 296 (348)
Q Consensus 229 ~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~ls--~----n~~~~~~-----~~~l~~~~~L~~L~L~~n~l~~~~~~ 296 (348)
+++|+.|.+..+.+.......+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 34455554444443322222222 25677777777 2 3333111 11144567788888766 55543444
Q ss_pred cccC-CCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCccccc
Q 035693 297 SMAN-LTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGG 342 (348)
Q Consensus 297 ~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ 342 (348)
.+.. +++|+.|++++|.+++.....+...+++|++|+|++|.+++.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 4443 788999999999887655555545678999999999988643
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.9e-18 Score=160.95 Aligned_cols=187 Identities=21% Similarity=0.281 Sum_probs=141.4
Q ss_pred CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693 98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL 177 (348)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 177 (348)
.+|+.|++++|.++ .+|.. + .++|+.|++++|.++..+ ..+++|++|++++|.+++ +|. +
T Consensus 59 ~~L~~L~Ls~n~L~-------~lp~~--l--~~~L~~L~Ls~N~l~~ip-------~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-------SLPDN--L--PPQITVLEITQNALISLP-------ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp TTCSEEECCSSCCS-------CCCSC--C--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCccEEEeCCCCCC-------ccCHh--H--cCCCCEEECcCCCCcccc-------cccCCCCEEEccCCCCCC-cch-h
Confidence 38999999999864 24442 2 368999999999887533 346889999999999887 555 4
Q ss_pred hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCc
Q 035693 178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR 257 (348)
Q Consensus 178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 257 (348)
.. +|++|++++|.+ +. ++. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.. ++.+. ++|+
T Consensus 119 ~~--~L~~L~Ls~N~l-~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--lp~l~--~~L~ 183 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQL-TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--LPELP--ESLE 183 (571)
T ss_dssp CT--TCCEEECCSSCC-SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCCCC--TTCC
T ss_pred hc--CCCEEECCCCcC-CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--cchhh--CCCC
Confidence 44 899999999844 33 343 57889999999999874 555 56789999999998755 33354 7899
Q ss_pred EEEcccCCCCCCCCccccCCCCC-------CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhh
Q 035693 258 NLNLKNTSFSGKLPDSIGNLENL-------ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLY 324 (348)
Q Consensus 258 ~L~ls~n~~~~~~~~~l~~~~~L-------~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 324 (348)
.|++++|.++ .+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++.+.+|..+..
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 9999999888 6666 543 67 999999999987 7777777899999999999998877665443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=6.7e-18 Score=151.12 Aligned_cols=223 Identities=22% Similarity=0.240 Sum_probs=160.3
Q ss_pred ccccCEEeCCCCCCCCCCC--CCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcE-EEccCcCCCCcchhhhh
Q 035693 75 LQYLQSLNLGFTLFYGFPM--PSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRE-LYLDNVDLSGRRTEWCK 151 (348)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~ 151 (348)
.++++.|++++|.++.... ...+++|++|++++|.+.. .++. ..+.+++++++ +.+.+|++....+ .
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~---~ 98 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE------VIEA-DVFSNLPKLHEIRIEKANNLLYINP---E 98 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC------EECT-TSBCSCTTCCEEEEEEETTCCEECT---T
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC------ccCh-hHhhcchhhhhhhcccCCcccccCc---h
Confidence 3578999999998887421 1278899999999997532 2221 23678888775 5556688877665 5
Q ss_pred hhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC-CCCEEEccCCcCCCcccccccCCC
Q 035693 152 AMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL-NLTTLDLSQCDLHGKFPEKVLQVP 230 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~ 230 (348)
.+..+++|++|++++|.+....+..+....++..|++.++..+.......+..+. .++.|++++|.+. .++.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc
Confidence 6788999999999999988765556666778888888775444433334455554 6888999999987 5666666677
Q ss_pred CccEEEccC-CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693 231 TLETLDLSY-NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309 (348)
Q Consensus 231 ~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 309 (348)
+|+++++.+ |.+.......|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+|. +..+++|+.+++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence 899999975 5555445556788899999999999998 55542 356777777766655555664 678899999998
Q ss_pred CCC
Q 035693 310 SSN 312 (348)
Q Consensus 310 ~~n 312 (348)
.++
T Consensus 254 ~~~ 256 (350)
T 4ay9_X 254 TYP 256 (350)
T ss_dssp SCH
T ss_pred CCC
Confidence 763
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.1e-18 Score=146.96 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=156.1
Q ss_pred ccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC
Q 035693 75 LQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS 154 (348)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 154 (348)
+..+..+.+..+.+.+......+++|++|++++|.+.. ++ .+..+++|+.|++++|++.+..+ +.
T Consensus 23 l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-------~~---~~~~l~~L~~L~L~~n~l~~~~~-----l~ 87 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-------VQ---GIQYLPNVTKLFLNGNKLTDIKP-----LA 87 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCC-------CT---TGGGCTTCCEEECCSSCCCCCGG-----GT
T ss_pred HHHHHHHHhcCCCcccccchhhcCcccEEEccCCCccc-------Ch---hHhcCCCCCEEEccCCccCCCcc-----cc
Confidence 44455556777777664222379999999999998642 22 27889999999999999987653 78
Q ss_pred CCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccE
Q 035693 155 FLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLET 234 (348)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 234 (348)
.+++|++|++++|.+.+ ++ .+..+++|++|++++|.... + ..+..+++|++|++++|.+.+. ..+..+++|+.
T Consensus 88 ~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 89999999999999987 33 48899999999999995433 2 5678899999999999999854 56889999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 235 LDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 235 L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
|++++|.+.... .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 161 L~L~~N~l~~~~--~l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 161 LSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEccCCccccch--hhcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 999999875443 37789999999999999984 44 47889999999999999987
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=4.9e-18 Score=160.31 Aligned_cols=209 Identities=21% Similarity=0.280 Sum_probs=125.8
Q ss_pred CCCCCCCCCCc-----cccce-EeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCCCCCCc
Q 035693 28 MSQWSESTDCC-----DWNGV-DCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSSLPRLV 101 (348)
Q Consensus 28 ~~~w~~~~~~~-----~~~~~-~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 101 (348)
+..|..+.+.| .|.++ .|.. .+++.|+++++ .+.+ +|. .+ +++|+.|++++|.++. +|..+++|+
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n-~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip~~l~~L~ 103 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRL-NLSS-LPD--NL--PPQITVLEITQNALIS--LPELPASLE 103 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSS-CCSC-CCS--CC--CTTCSEEECCSSCCSC--CCCCCTTCC
T ss_pred HHHHhccCCccccccchhhhcccccc-CCccEEEeCCC-CCCc-cCH--hH--cCCCCEEECcCCCCcc--cccccCCCC
Confidence 55676677777 68888 6643 57899999998 7764 664 34 3778888888888875 446677777
Q ss_pred EEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhcc
Q 035693 102 TLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLL 181 (348)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 181 (348)
+|++++|.++. +|. +.+ +|+.|++++|.++..+. .+++|++|++++|.+++ +|. .++
T Consensus 104 ~L~Ls~N~l~~-------ip~---l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~ 160 (571)
T 3cvr_A 104 YLDACDNRLST-------LPE---LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTM-LPE---LPT 160 (571)
T ss_dssp EEECCSSCCSC-------CCC---CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred EEEccCCCCCC-------cch---hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCc-CCC---cCC
Confidence 77777776531 222 111 66666666666655221 34556666666665554 332 234
Q ss_pred CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCC-----CCCC
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK-----NSSL 256 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L 256 (348)
+| ++|++++|.+++ +|. +. ++|+.|++++|.+.. ++.+.. .+.|
T Consensus 161 ~L-------------------------~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L 209 (571)
T 3cvr_A 161 SL-------------------------EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES--LPAVPVRNHHSEETE 209 (571)
T ss_dssp TC-------------------------CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS--CCCCC--------CC
T ss_pred Cc-------------------------CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc--hhhHHHhhhcccccc
Confidence 44 445555544442 333 22 455555555555431 111222 1223
Q ss_pred cEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccC
Q 035693 257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMAN 300 (348)
Q Consensus 257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 300 (348)
+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77777777777 56776666778888888888887766655544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=6.4e-18 Score=161.07 Aligned_cols=193 Identities=21% Similarity=0.334 Sum_probs=154.1
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
.+..+..+.+..+.+. ....+..+++|+.|++++|.+.... .+..+++|++|++++|.+.+..+
T Consensus 19 ~l~~l~~l~l~~~~i~----------~~~~~~~L~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~- 82 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVT----------DAVTQNELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP- 82 (605)
T ss_dssp HHHHHHHHHTTCSCTT----------SEECHHHHTTCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCCCCGG-
T ss_pred HHHHHHHHhccCCCcc----------cccchhcCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCCCChh-
Confidence 3445566666665542 1122567889999999999987653 47789999999999999988544
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
+..+++|+.|+|++|.+.. ...+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+... +.+..+++
T Consensus 83 -l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 154 (605)
T 1m9s_A 83 -LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK 154 (605)
T ss_dssp -GGGCTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT
T ss_pred -hccCCCCCEEECcCCCCCC---ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC
Confidence 8899999999999995432 2367889999999999999874 3 4578899999999999987543 66777899
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+
T Consensus 155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 9999999999986544 7888999999999999988 43 57889999999999999876
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.3e-17 Score=147.67 Aligned_cols=225 Identities=20% Similarity=0.139 Sum_probs=164.5
Q ss_pred cEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhh
Q 035693 101 VTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLAN 179 (348)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 179 (348)
++++.+++.++ .+|.. + .+++++|+|++|+++.... ..|.++++|++|++++|.+.+.++ .+|..
T Consensus 12 ~~v~C~~~~Lt-------~iP~~--l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT-------EIPSD--L--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp TEEEEESTTCC-------SCCTT--C--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CEEEecCCCCC-------ccCcC--c--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 57788877764 34543 2 3579999999999987765 468899999999999999876554 46788
Q ss_pred ccCCCEE-EcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCC-CCCCCCCCCCCCC-CCC
Q 035693 180 LLSLSVI-RLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYN-SLLQGSLPHFPKN-SSL 256 (348)
Q Consensus 180 ~~~L~~L-~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~-~~L 256 (348)
+++++++ .+..| .+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+.......|... ..+
T Consensus 78 L~~l~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 78 LPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp CTTCCEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred chhhhhhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 8888764 44555 445455677889999999999999998554445556677888988764 4444445556664 468
Q ss_pred cEEEcccCCCCCCCCccccCCCCCCEEeecC-CccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693 257 RNLNLKNTSFSGKLPDSIGNLENLASVDVSS-CNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 257 ~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 335 (348)
+.|++++|+++ .++.......+|+++.+.+ |.+....+.++..+++|++|++++|+++. +|...+ .+|+.|.+.
T Consensus 157 ~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~~---~~L~~L~~l 231 (350)
T 4ay9_X 157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGL---ENLKKLRAR 231 (350)
T ss_dssp EEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSSC---TTCCEEECT
T ss_pred hhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhhh---ccchHhhhc
Confidence 99999999998 4555444557899999975 56666444577889999999999999986 666543 567777766
Q ss_pred cCcccccCCC
Q 035693 336 SNDLTGGISS 345 (348)
Q Consensus 336 ~n~l~g~ip~ 345 (348)
++.--..+|.
T Consensus 232 ~~~~l~~lP~ 241 (350)
T 4ay9_X 232 STYNLKKLPT 241 (350)
T ss_dssp TCTTCCCCCC
T ss_pred cCCCcCcCCC
Confidence 6532236664
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.5e-17 Score=155.95 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=158.8
Q ss_pred cccccCEEeCCCCCCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhh
Q 035693 74 SLQYLQSLNLGFTLFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAM 153 (348)
Q Consensus 74 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 153 (348)
.+..+..+.+..+.+.+......+++|+.|++++|.+. .++ .+..+++|+.|+|++|++.+..+ +
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-------~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l 83 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-------SVQ---GIQYLPNVTKLFLNGNKLTDIKP-----L 83 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-------CCT---TGGGCTTCCEEECTTSCCCCCGG-----G
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-------CCh---HHccCCCCCEEEeeCCCCCCChh-----h
Confidence 44556667777777776522228999999999999864 222 27889999999999999987654 7
Q ss_pred CCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCcc
Q 035693 154 SFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLE 233 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 233 (348)
..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC---CccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 889999999999999987 33 68889999999999995433 24588999999999999999854 5688999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693 234 TLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293 (348)
Q Consensus 234 ~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ 293 (348)
.|++++|.+..... +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++...
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 99999998754333 7789999999999999984 43 578899999999999999874
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5.2e-17 Score=133.19 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=107.5
Q ss_pred hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCc
Q 035693 178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLR 257 (348)
Q Consensus 178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 257 (348)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45566777777776432 223 4666777777777777554 223566777888888888777655566777778888
Q ss_pred EEEcccCCCCCCCCccccCCCCCCEEeecCCc-cCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeeccc
Q 035693 258 NLNLKNTSFSGKLPDSIGNLENLASVDVSSCN-FTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSS 336 (348)
Q Consensus 258 ~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 336 (348)
+|++++|.+++..+..+..+++|++|++++|. +.. ++ .+..+++|+.|++++|++.+ ++ .+..+++|++|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeC
Confidence 88888888876566777788888888888887 555 45 57778888888888888876 44 233457888888888
Q ss_pred Ccccc
Q 035693 337 NDLTG 341 (348)
Q Consensus 337 n~l~g 341 (348)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 88864
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2e-17 Score=135.61 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=101.5
Q ss_pred CCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEE
Q 035693 156 LPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETL 235 (348)
Q Consensus 156 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 235 (348)
+++|++|++++|.+.. ++ .+..+++|++|++++|. .. ....+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~-~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIH-AT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCC-CS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCC-CC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4566677777766664 34 46666777777777762 22 22356667777777777777765566667777777777
Q ss_pred EccCCCCCCCCCCCCCCCCCCcEEEcccCC-CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCcc
Q 035693 236 DLSYNSLLQGSLPHFPKNSSLRNLNLKNTS-FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 236 ~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 314 (348)
++++|.+....+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 777777655445556667777777777776 54 444 56777888888888888876 33 567778888888888887
Q ss_pred CC
Q 035693 315 SD 316 (348)
Q Consensus 315 ~~ 316 (348)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7e-17 Score=134.72 Aligned_cols=152 Identities=15% Similarity=0.128 Sum_probs=85.5
Q ss_pred cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEE
Q 035693 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLD 212 (348)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 212 (348)
+.+++++++++..+.. + .++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN----L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSSCCSS----C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCCcCcCCCc----c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEE
Confidence 5667777766655431 1 2567777777777766555556666666666666663 3333345555666666666
Q ss_pred ccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693 213 LSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT 291 (348)
Q Consensus 213 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~ 291 (348)
+++|.+....+..+..+++|+.|++++|.+.......|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666665332233455555666666665554444445555555555555555555443444555555555555555554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=6.1e-17 Score=135.12 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=101.2
Q ss_pred cEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcch-HHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEE
Q 035693 133 RELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPIN-HHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTL 211 (348)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 211 (348)
+.++++++.++.++.. + ...+++|++++|.+++..+ ..+..+++|++|++++|. ++...+..|..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~----~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH----I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccC----C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence 5788888877765431 1 3456788888888776533 346677777777777773 333344466677777777
Q ss_pred EccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693 212 DLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT 291 (348)
Q Consensus 212 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~ 291 (348)
++++|.+.+..+..+..+++|++|++++|.+.......|..+++|++|++++|.+++..|..+..+++|+.|++++|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77777776555555666777777777777665555556666667777777777766555666666666777777776665
Q ss_pred C
Q 035693 292 R 292 (348)
Q Consensus 292 ~ 292 (348)
.
T Consensus 167 c 167 (220)
T 2v70_A 167 C 167 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=6.3e-17 Score=145.36 Aligned_cols=178 Identities=24% Similarity=0.203 Sum_probs=140.5
Q ss_pred CcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhh-hccCCCEEEcccCCCCCCChhhhhhcCCCCCE
Q 035693 132 LRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLA-NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTT 210 (348)
Q Consensus 132 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 210 (348)
-+.++++++++...+.. -...+++|++++|.+++..+..+. .+++|++|++++|. +....+..|..+++|++
T Consensus 20 ~~~l~c~~~~l~~iP~~------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TTEEECCSSCCSSCCSS------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCcc------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCE
Confidence 36889999988776532 234689999999999886666676 88999999999984 44445567888999999
Q ss_pred EEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCc-cc---cCCCCCCEEeec
Q 035693 211 LDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPD-SI---GNLENLASVDVS 286 (348)
Q Consensus 211 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~l---~~~~~L~~L~L~ 286 (348)
|++++|.+....+..+..+++|+.|++++|.+.......|..+++|+.|++++|.+++ +|. .+ ..+++|+.|+|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECC
Confidence 9999999886555668889999999999998877667778888999999999999884 444 33 567899999999
Q ss_pred CCccCCCCcccccCCCC--CCEEeCCCCccCCc
Q 035693 287 SCNFTRPIPTSMANLTQ--LFHLDFSSNHFSDP 317 (348)
Q Consensus 287 ~n~l~~~~~~~l~~~~~--L~~L~l~~n~l~~~ 317 (348)
+|.+....+..+..++. ++.|++++|++.++
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99998855566666766 48899999998764
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.9e-16 Score=131.87 Aligned_cols=136 Identities=21% Similarity=0.240 Sum_probs=83.0
Q ss_pred cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEE
Q 035693 181 LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLN 260 (348)
Q Consensus 181 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 260 (348)
++|++|++++| .+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 34455555544 22223334445555555555555555433333445566666666666665544444455666777777
Q ss_pred cccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693 261 LKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 261 ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
+++|++. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 7777776 56666677777777777777777655556667777777777777776644
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.9e-16 Score=131.84 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=129.1
Q ss_pred CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 261 (348)
.-+.++++++... .++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~--~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA--SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC--ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3556777665322 233322 378999999999999777888999999999999999986666666788999999999
Q ss_pred ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
++|.+++..+..+..+++|++|++++|.+.. +|..+..+++|+.|++++|++.+ ++...+..+++|+.|++++|++++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999996666677889999999999999996 78888999999999999999987 555555566899999999999986
Q ss_pred cCC
Q 035693 342 GIS 344 (348)
Q Consensus 342 ~ip 344 (348)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=8.7e-17 Score=144.45 Aligned_cols=178 Identities=19% Similarity=0.120 Sum_probs=143.3
Q ss_pred CcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhC-CCCCCcEEEccCccCCCcchHHhh
Q 035693 100 LVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMS-FLPNLQVLNLSNCLLSDPINHHLA 178 (348)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~ 178 (348)
-+.++++++.+. .+|.. + .+.++.|++++|+++...+ ..+. .+++|++|++++|.++...+..+.
T Consensus 20 ~~~l~c~~~~l~-------~iP~~--~--~~~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 85 (361)
T 2xot_A 20 SNILSCSKQQLP-------NVPQS--L--PSYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFV 85 (361)
T ss_dssp TTEEECCSSCCS-------SCCSS--C--CTTCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCEEEeCCCCcC-------ccCcc--C--CCCCCEEECCCCCCCccCh---hhhhhcccccCEEECCCCcCCccChhhcc
Confidence 468999988764 34432 2 2468999999999987765 3455 899999999999999987778899
Q ss_pred hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCC---CCCCC
Q 035693 179 NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHF---PKNSS 255 (348)
Q Consensus 179 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~ 255 (348)
.+++|++|++++|. +....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++
T Consensus 86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 99999999999995 444455678899999999999999987767889999999999999999876555555 45889
Q ss_pred CcEEEcccCCCCCCCCccccCCCC--CCEEeecCCccCC
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLEN--LASVDVSSCNFTR 292 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~--L~~L~L~~n~l~~ 292 (348)
|+.|++++|.+++..+..+..++. ++.|++++|++..
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 999999999998544456666666 4889999999874
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=2.6e-16 Score=131.29 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=132.4
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 238 (348)
-+.++++++.++. +|..+. ++|+.|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 13 ~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSS-CCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCc-CCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 3678888888876 454433 689999999994 444455578889999999999999987778889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
+|.+.......|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9998766666678899999999999999977788899999999999999999997777788899999999999999764
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=5.6e-16 Score=129.23 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=55.6
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+.++++|+.|++++|+++...+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 128 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEE---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGL 128 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred hccCCCCCEEECCCCcCCEECH---HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence 4555566666666665554443 345555556666666655555444445555555555555552 222233344444
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCC
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNS 241 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 241 (348)
++|++|++++|.+.+..|..+..+++|+.|++++|+
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 445555555544443334444444444444444443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=7.2e-17 Score=138.44 Aligned_cols=171 Identities=20% Similarity=0.282 Sum_probs=116.4
Q ss_pred CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchH
Q 035693 96 SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINH 175 (348)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (348)
.+.++..++++++.++. ++ .+..+++|+.|++++|++.... .+..+++|++|++++|.+++..+
T Consensus 17 ~l~~l~~l~l~~~~i~~-------~~---~~~~l~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-------LV---SQKELSGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-------EE---CHHHHTTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCCccc-------cc---chhhcCcCcEEECcCCCcccch-----HHhhCCCCCEEECCCCccCCChh-
Confidence 45566777777776531 11 2567778888888888776543 35667888888888888777443
Q ss_pred HhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCC
Q 035693 176 HLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSS 255 (348)
Q Consensus 176 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 255 (348)
+..+++|++|++++|.... ++. +.. ++|++|++++|.+.+ . +.+..+++|+.|++++|.+... +.+..+++
T Consensus 81 -l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 151 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSK 151 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTT
T ss_pred -hccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCC
Confidence 7777888888888874332 222 222 678888888887764 3 3467777888888888776443 35566777
Q ss_pred CcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693 256 LRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293 (348)
Q Consensus 256 L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ 293 (348)
|++|++++|.+.+. ..+..+++|+.|++++|++...
T Consensus 152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888888877744 4566777788888888777663
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.4e-16 Score=134.21 Aligned_cols=171 Identities=17% Similarity=0.240 Sum_probs=134.6
Q ss_pred CCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCC
Q 035693 128 NLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLN 207 (348)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 207 (348)
++.++..++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +... +. +..+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-----~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~-~~-l~~l~~ 86 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-----SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDL-SP-LKDLTK 86 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-----CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCC-GG-GTTCSS
T ss_pred HHHHHHHHHhcCCCccccc-----chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCC-hh-hccCCC
Confidence 4556777888888887654 25567889999999998886 44 67888999999999984 3433 33 788999
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
|++|++++|.+.+ ++.. .. ++|+.|++++|.+.. .+.+..+++|+.|++++|++++ ++ .+..+++|+.|++++
T Consensus 87 L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence 9999999998874 4432 23 889999999998754 3567778899999999999884 34 677888999999999
Q ss_pred CccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 288 CNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999885 5677888999999999998763
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.7e-16 Score=124.04 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=113.5
Q ss_pred CCCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693 205 LLNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV 283 (348)
Q Consensus 205 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L 283 (348)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888886 56777778888999999999987544 777778999999999999986677777778999999
Q ss_pred eecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeecccCcccccCCCC
Q 035693 284 DVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 284 ~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
++++|.+.+.. +..+..+++|+.|++++|++.+ ++. ..+..+++|++|++++|.++ ++|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999998832 2678889999999999999987 444 34555689999999999986 77764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.4e-17 Score=156.17 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=121.8
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-------------CCCcchHHhhhccCCCEEE-cccCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-------------LSDPINHHLANLLSLSVIR-LRDNH 192 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~ 192 (348)
..+++|+.|++++|++.. ++..++++++|++|++++|. ..+..|..+..+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~----Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhHHh----hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 345666667777666642 22455666666666665443 3444566677777777776 44331
Q ss_pred CCCCChhh------hhhc--CCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccC
Q 035693 193 AVSCQVPE------FVAN--LLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNT 264 (348)
Q Consensus 193 ~~~~~~~~------~l~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n 264 (348)
. . .+.. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 422 ~-~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 422 L-D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp H-H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred c-c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 1 1 0000 1111 1257777777777763 555 677777777777777765 33345666777777777777
Q ss_pred CCCCCCCccccCCCCCCEEeecCCccCCCC-cccccCCCCCCEEeCCCCccCCccCch--hhhhhcCCCeeec
Q 035693 265 SFSGKLPDSIGNLENLASVDVSSCNFTRPI-PTSMANLTQLFHLDFSSNHFSDPIPTL--RLYMSRNLNYLNL 334 (348)
Q Consensus 265 ~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~l 334 (348)
.+++ +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|++.+..+.. ....+++|+.|++
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7774 55 6777777777888777777754 777777777788888877776643322 2333467777754
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=4.3e-16 Score=151.98 Aligned_cols=144 Identities=20% Similarity=0.179 Sum_probs=81.0
Q ss_pred hhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCC
Q 035693 199 PEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLE 278 (348)
Q Consensus 199 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~ 278 (348)
+..+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.+. ..+..+..+++|++|+|++|.++ .+|..++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 344555566666666666655 45555556666666666666554 22233455666666666666666 5566666666
Q ss_pred CCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCCC
Q 035693 279 NLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISSN 346 (348)
Q Consensus 279 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~~ 346 (348)
+|++|+|++|.+.. +|..+..+++|+.|+|++|++.+.+|..+......+..+++++|.++|.+|..
T Consensus 294 ~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp TCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 66666666666654 55556666666666666666666555443332122234556666666666553
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=3.7e-15 Score=116.35 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=107.4
Q ss_pred CCCCCEEEccCCcCC-CcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEE
Q 035693 205 LLNLTTLDLSQCDLH-GKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASV 283 (348)
Q Consensus 205 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L 283 (348)
.+++++|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999887 57777788889999999999987554 777788999999999999986678777778999999
Q ss_pred eecCCccCCC-CcccccCCCCCCEEeCCCCccCCccCc---hhhhhhcCCCeeeccc
Q 035693 284 DVSSCNFTRP-IPTSMANLTQLFHLDFSSNHFSDPIPT---LRLYMSRNLNYLNLSS 336 (348)
Q Consensus 284 ~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~ 336 (348)
++++|.+.+. .+..+..+++|++|++++|++.+ ++. ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 9999999883 34778899999999999999987 444 3455568999999864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=6.2e-15 Score=120.18 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=110.4
Q ss_pred CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccc-cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE-KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261 (348)
Q Consensus 183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 261 (348)
-+.++++++.. . .++..+. ..+++|++++|.+....+. .+..+++|++|++++|.+.......|..+++|++|++
T Consensus 10 ~~~l~~s~~~l-~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGL-K-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCC-S-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCc-C-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 37889988844 2 3444332 3899999999998854443 3788999999999999987776778888999999999
Q ss_pred ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc
Q 035693 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT 320 (348)
Q Consensus 262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 320 (348)
++|++++..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+..+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999877777788899999999999999998888888999999999999999886553
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2e-16 Score=140.33 Aligned_cols=242 Identities=13% Similarity=0.071 Sum_probs=146.0
Q ss_pred ccccCEEeCCCCCCCCCCCCC-CCCCCcEEecCCCCCCCCcceeecCCChhhhcC--------CCCCcEEEccCcCCCCc
Q 035693 75 LQYLQSLNLGFTLFYGFPMPS-SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQN--------LTELRELYLDNVDLSGR 145 (348)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~ 145 (348)
+++|+.|+|++|.+....... .++.++.+.+..+. ++. ..|.+ |++|+.+++.+ .+..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----------I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I 115 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----------VPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNI 115 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----------ECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc----------cCH-HHhcccccccccccCCCcEEECCc-cccch
Confidence 566777777777666211111 22223333333332 111 22455 88888888877 66665
Q ss_pred chhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC---CCCChhhhhhcCCCCC-------------
Q 035693 146 RTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA---VSCQVPEFVANLLNLT------------- 209 (348)
Q Consensus 146 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l~~l~~L~------------- 209 (348)
.. .+|.++++|++|++..|.+....+.+|..+.++..+....... ........|.++..|+
T Consensus 116 ~~---~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~ 192 (329)
T 3sb4_A 116 ED---AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED 192 (329)
T ss_dssp CT---TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred hH---HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence 54 5677788888888888877665566666666555555443100 0000111122333333
Q ss_pred -------------EEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693 210 -------------TLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276 (348)
Q Consensus 210 -------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~ 276 (348)
.+.+.+.-...........+++|+.+++.+|++.......|..+.+|+++++.+| +......+|..
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence 3333322111011011113678888888888777777777888888888888887 55444567788
Q ss_pred CCCCC-EEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeec
Q 035693 277 LENLA-SVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNL 334 (348)
Q Consensus 277 ~~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 334 (348)
+.+|+ .+.+.+ .+..+.+.++.++++|+.+++.+|.+.. ++...+..+++|+.++.
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 88888 888887 6777666788888888888888888865 66666667788887763
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=3e-17 Score=155.53 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=145.7
Q ss_pred hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC------------CCCChhhhhhcCCCCCEEE-ccCCcCC
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA------------VSCQVPEFVANLLNLTTLD-LSQCDLH 219 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------~~~~~~~~l~~l~~L~~L~-l~~~~~~ 219 (348)
+..+++|+.|++++|.+.. +|..+..+++|+.|++.+|.. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 3568899999999999875 899999999999999866520 2334566777778888887 4544322
Q ss_pred Ccccc------ccc--CCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693 220 GKFPE------KVL--QVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT 291 (348)
Q Consensus 220 ~~~~~------~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~ 291 (348)
.++. .+. ....|+.|++++|.+.. ++.+..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC--CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1110 011 11358999999998754 455888999999999999999 88999999999999999999999
Q ss_pred CCCcccccCCCCCCEEeCCCCccCCcc-CchhhhhhcCCCeeecccCcccccCCC
Q 035693 292 RPIPTSMANLTQLFHLDFSSNHFSDPI-PTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 292 ~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
+ +| .+..+++|+.|++++|++.+.. |..+.. +++|+.|+|++|++++..|.
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccH
Confidence 8 67 7899999999999999998854 665544 58999999999999976553
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=3e-14 Score=114.52 Aligned_cols=134 Identities=20% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693 182 SLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261 (348)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 261 (348)
..+.++++++.... ++.. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~--~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS--VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSS--CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCcc--CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 35678888774332 3322 2368899999999888555556778899999999999876555556777889999999
Q ss_pred ccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccC
Q 035693 262 KNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIP 319 (348)
Q Consensus 262 s~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 319 (348)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999886655667788899999999999987555566778899999999999887655
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.3e-14 Score=118.23 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=112.0
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChh-hhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEc
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVP-EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDL 237 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 237 (348)
-++++++++.++. +|..+. .+|++|++++|.+ ....+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 10 ~~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCc-CccCCC--CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3789999999876 565443 3899999999954 43333 34889999999999999999777888999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCC
Q 035693 238 SYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPI 294 (348)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 294 (348)
++|.+.......|..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999987777777888999999999999999777888999999999999999998643
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=4.3e-16 Score=151.96 Aligned_cols=190 Identities=23% Similarity=0.186 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhCccCCCCCCcccCCCCCC-CCCCccccceEeCCCCCEEEEeCCCCccccccccCCcccccccccCEEeC
Q 035693 5 QKLLLIQMKNSFIFDVDSTPPAKMSQWSE-STDCCDWNGVDCDEAGHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNL 83 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~c~~~~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l 83 (348)
+..+++.+..+.. +..|..-..|.. ......|.+..+.. .+++.|+|+++ .+.. .+. ..|+.++|
T Consensus 133 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n-~~~~-~~~-------~~l~~l~L 198 (727)
T 4b8c_D 133 TKQALMEMADTLT----DSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFAN-GKDE-ANQ-------ALLQHKKL 198 (727)
T ss_dssp CCHHHHHHHHHHH----HHHTTC---------------------------------------------------------
T ss_pred chhhhhhhhhhcc----cccCcccCCCcCCCCccccCCCceecC-CccceEEeeCC-CCCc-chh-------hHhhcCcc
Confidence 3445555554421 112244455643 44556787777655 67899999888 5543 221 23444555
Q ss_pred CCCCCCCCC-----------CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhh
Q 035693 84 GFTLFYGFP-----------MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKA 152 (348)
Q Consensus 84 ~~~~~~~~~-----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 152 (348)
+.+.+.+.. ....+++|+.|+|++|.+. .++.. +.++++|++|+|++|.++..+ ..
T Consensus 199 s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-------~l~~~--~~~l~~L~~L~Ls~N~l~~lp----~~ 265 (727)
T 4b8c_D 199 SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-------NISAN--IFKYDFLTRLYLNGNSLTELP----AE 265 (727)
T ss_dssp -----------------------CCCCCCEEECTTSCCS-------CCCGG--GGGCCSCSCCBCTTSCCSCCC----GG
T ss_pred CcccccCccccccceecChhhhccCCCCcEEECCCCCCC-------CCChh--hcCCCCCCEEEeeCCcCcccC----hh
Confidence 555444321 0114445555555555432 22222 334445555555555444222 23
Q ss_pred hCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccc
Q 035693 153 MSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPE 224 (348)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 224 (348)
+..+++|++|+|++|.++. +|..+..+++|++|+|++|.+ . .++..|..+++|++|++++|.+.+..|.
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l-~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV-T-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCC-C-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred hhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCC-C-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 4444455555555555442 344444455555555554422 1 2333344445555555555554444333
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=4.7e-14 Score=112.35 Aligned_cols=133 Identities=23% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHh
Q 035693 98 PRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHL 177 (348)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 177 (348)
++|++|++++|.+.. ..++.. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+.++..+
T Consensus 24 ~~L~~L~l~~n~l~~-----~~i~~~--~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCKSND-----GKIEGL--TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TSCSEEECCSCBCBT-----TBCSSC--CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred ccCCEEECCCCCCCh-----hhHHHH--HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 445555555554320 133333 56667777777777776654 245667777777777777766566666
Q ss_pred hhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc---ccccCCCCccEEEccCCCC
Q 035693 178 ANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP---EKVLQVPTLETLDLSYNSL 242 (348)
Q Consensus 178 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~l 242 (348)
..+++|++|++++|..........+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6677777777777743221222556666777777777776663322 2566666777777766654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=3.6e-14 Score=110.65 Aligned_cols=107 Identities=25% Similarity=0.259 Sum_probs=48.7
Q ss_pred cCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 127 QNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
..+++|+.|++++|.+... ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.......+..+..++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred hhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 3444444444444444432 13444455555555555554444444444555555555555221111224444555
Q ss_pred CCCEEEccCCcCCCccc---ccccCCCCccEEEcc
Q 035693 207 NLTTLDLSQCDLHGKFP---EKVLQVPTLETLDLS 238 (348)
Q Consensus 207 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 238 (348)
+|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555555543222 234445555555443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=8.6e-14 Score=113.43 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=110.1
Q ss_pred CCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcc
Q 035693 183 LSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLK 262 (348)
Q Consensus 183 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls 262 (348)
-+.++++++... .++..+ .+.+++|++++|.+. .+|..+..+++|+.|++++|.+.......|..+++|++|+++
T Consensus 12 ~~~l~~~~~~l~--~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK--VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS--SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC--cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 367888887433 234333 358999999999998 777889999999999999999877777778889999999999
Q ss_pred cCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693 263 NTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 263 ~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
+|.+++..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|++.+.-
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 99999777778899999999999999999866667888999999999999997643
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4e-14 Score=113.66 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=86.5
Q ss_pred hcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCE
Q 035693 203 ANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLAS 282 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~ 282 (348)
..+.+|++|++++|.+. .++......++|+.|++++|.+... +.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34556777777777666 3333222233777777777766433 56666777777888777777433334467778888
Q ss_pred EeecCCccCCCCcc--cccCCCCCCEEeCCCCccCCccCch---hhhhhcCCCeeecccCccc
Q 035693 283 VDVSSCNFTRPIPT--SMANLTQLFHLDFSSNHFSDPIPTL---RLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 283 L~L~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~ 340 (348)
|++++|.+.. ++. .+..+++|+.|++++|++.. ++.. .+..+++|+.||+++|.+.
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888887765 444 56677788888888888764 4543 3444577888888777653
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=5e-14 Score=124.80 Aligned_cols=241 Identities=13% Similarity=0.008 Sum_probs=148.6
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCCCCCCC--------CCCCcEEecCCCCCCCCcceeecC
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGFPMPSS--------LPRLVTLDLSSREPISGFSWRLEI 120 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~ 120 (348)
++|+.|+|++| .+..... .-+.++.++.+.+..+.+... .... |++|++|++.+ .++ .+
T Consensus 49 ~~L~~LdLs~n-~i~~~~~---~~~~~~~~~~~~~~~~~I~~~-aF~~~~~~~~~g~~~L~~l~L~~-~i~-------~I 115 (329)
T 3sb4_A 49 PSLKVLDISNA-EIKMYSG---KAGTYPNGKFYIYMANFVPAY-AFSNVVNGVTKGKQTLEKVILSE-KIK-------NI 115 (329)
T ss_dssp TTCCEEEEEEE-EECCEEE---SSSSSGGGCCEEECTTEECTT-TTEEEETTEEEECTTCCC-CBCT-TCC-------EE
T ss_pred ccCeEEecCcc-eeEEecC---ccccccccccccccccccCHH-HhcccccccccccCCCcEEECCc-ccc-------ch
Confidence 67999999998 5541000 011122233344444433332 2223 56666666655 331 11
Q ss_pred CChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccC--------------------------CCcch
Q 035693 121 PNFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLL--------------------------SDPIN 174 (348)
Q Consensus 121 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------~~~~~ 174 (348)
+ ...|.+|++|+.+++.++.+..... ..|..+.++.++....... .+.++
T Consensus 116 ~-~~aF~~~~~L~~l~l~~n~i~~i~~---~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 116 E-DAAFKGCDNLKICQIRKKTAPNLLP---EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp C-TTTTTTCTTCCEEEBCCSSCCEECT---TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred h-HHHhhcCcccceEEcCCCCccccch---hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 1 1235566666666666665554433 3344444444444333100 01122
Q ss_pred HHhh----hccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCC
Q 035693 175 HHLA----NLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHF 250 (348)
Q Consensus 175 ~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 250 (348)
..+. ...+++.+.+.+. ............+++|+.+++++|.+.......|..+++|+++++.++ +......+|
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 2111 2345666666654 222122222234889999999999888555556889999999999987 777777889
Q ss_pred CCCCCCc-EEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeC
Q 035693 251 PKNSSLR-NLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDF 309 (348)
Q Consensus 251 ~~~~~L~-~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 309 (348)
..+.+|+ .+++.+ .++..-+.+|..+++|+.+++.+|.+..+.+.++.++++|+.+..
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999 999988 666455678999999999999999999977889999999999874
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=2.7e-13 Score=110.49 Aligned_cols=129 Identities=24% Similarity=0.212 Sum_probs=109.1
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 238 (348)
-++++++++.++. +|..+ .++|++|++++|.+. .++..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 12 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 3688999998886 55433 368999999999543 456788999999999999999987766778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCC
Q 035693 239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
+|.+.......|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999887777788889999999999999985555568889999999999999874
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=5.8e-13 Score=106.93 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=79.4
Q ss_pred CcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEcc
Q 035693 159 LQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLS 238 (348)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 238 (348)
.+.++++++.+.. +|..+ .++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4566666666655 33222 2567777777763 333334455666777777777777664444445666777777777
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCC
Q 035693 239 YNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRP 293 (348)
Q Consensus 239 ~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ 293 (348)
+|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|++...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7766544444455666777777777776644333455666777777777776653
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=4.1e-12 Score=115.18 Aligned_cols=200 Identities=11% Similarity=0.100 Sum_probs=107.4
Q ss_pred hcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC
Q 035693 126 FQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
|.+|++|+.+++.++.+..... ..|. +.+|+++.+..+ +...-..+|..+.+|+.+.+..+ . +.....+|.+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~---~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~~- 247 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPA---STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFRE- 247 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECT---TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTTT-
T ss_pred hhCcccCCeeecCCCcceEech---hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-cCcccccccc-
Confidence 5666666666666666655443 2233 456666666533 44444456666666666666654 2 2222334444
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCC-----CCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCC
Q 035693 206 LNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLL-----QGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENL 280 (348)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L 280 (348)
.+|+.+.+.. .+.......|..+++|+.+.+.++.+. ......|..+++|+.+.+.. .+...-..+|..+.+|
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 4666666633 233233445666666777766665432 23344555566666666663 3442334456666667
Q ss_pred CEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhh-cCCCeeecccCc
Q 035693 281 ASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS-RNLNYLNLSSND 338 (348)
Q Consensus 281 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~ 338 (348)
+.+.+..+ +..+...++.++ +|+.+.+.+|.+.. ++...+..+ ..+..|.+..+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHH
Confidence 77766443 444445556666 67777776665543 222222222 355566665543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=9e-12 Score=112.97 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=179.1
Q ss_pred ccccccCEEeCCCC--CCCCCCCCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcchhhh
Q 035693 73 FSLQYLQSLNLGFT--LFYGFPMPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRTEWC 150 (348)
Q Consensus 73 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 150 (348)
..+..++.+.+..+ .|... ...++ +|+.+.+..+ +. .++. ..|.++ +|+.+.+.. .+.....
T Consensus 110 ~~~~~l~~i~ip~~i~~I~~~-aF~~~-~L~~i~l~~~-i~-------~I~~-~aF~~~-~L~~i~lp~-~l~~I~~--- 173 (401)
T 4fdw_A 110 EILKGYNEIILPNSVKSIPKD-AFRNS-QIAKVVLNEG-LK-------SIGD-MAFFNS-TVQEIVFPS-TLEQLKE--- 173 (401)
T ss_dssp EECSSCSEEECCTTCCEECTT-TTTTC-CCSEEECCTT-CC-------EECT-TTTTTC-CCCEEECCT-TCCEECS---
T ss_pred EecCCccEEEECCccCEehHh-hcccC-CccEEEeCCC-cc-------EECH-HhcCCC-CceEEEeCC-CccEehH---
Confidence 44577888887653 22222 11144 7999998765 22 2222 235565 699999986 5655554
Q ss_pred hhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 035693 151 KAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVP 230 (348)
Q Consensus 151 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 230 (348)
..|.++.+|+.+++..|.+......+|. +.+|+.+.+..+ .......+|.++++|+.+.+..+ +.......|.. .
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S 248 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence 5688999999999999988875555565 689999999865 34345677889999999999875 33233334555 7
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCC-----CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693 231 TLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFS-----GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305 (348)
Q Consensus 231 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 305 (348)
+|+.+.+.++ +......+|..+++|+++.+.++.+. .....+|..+++|+.+.+. +.+..+...++.++++|+
T Consensus 249 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 8999999654 66667788999999999999988664 2334578889999999998 457776677888999999
Q ss_pred EEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCCC
Q 035693 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
.+.|..+ +.. +....+..+ +|+.+++.+|.+. .++.
T Consensus 327 ~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~-~l~~ 362 (401)
T 4fdw_A 327 QLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTPP-QVFE 362 (401)
T ss_dssp EEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred EEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCCc-cccc
Confidence 9999765 443 666667777 9999999999775 4443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=1.6e-12 Score=104.30 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=67.8
Q ss_pred ccccccccCEEeCCCCCCCCCCCCC---CCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCcCCCCcch
Q 035693 71 GLFSLQYLQSLNLGFTLFYGFPMPS---SLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNVDLSGRRT 147 (348)
Q Consensus 71 ~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 147 (348)
.+.++++|+.|++++|.++.. +. ..++|++|++++|.++. + . .+..+++|++|++++|.++..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~-------~-~--~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRK-------L-D--GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCE-------E-C--CCCCCSSCCEEECCSSCCCEECS
T ss_pred hcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCc-------c-c--ccccCCCCCEEECCCCcccccCc
Confidence 455666777777777766653 22 23366666666665431 1 1 14555666666666666554432
Q ss_pred hhhhhhCCCCCCcEEEccCccCCCcchH--HhhhccCCCEEEcccCCCCCCChhh----hhhcCCCCCEEEccCCcC
Q 035693 148 EWCKAMSFLPNLQVLNLSNCLLSDPINH--HLANLLSLSVIRLRDNHAVSCQVPE----FVANLLNLTTLDLSQCDL 218 (348)
Q Consensus 148 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 218 (348)
..+..+++|++|++++|.+.. ++. .+..+++|+.|++++|+... .+. .+..+++|++|++++|..
T Consensus 82 ---~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 ---GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ---CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred ---chhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence 123445556666666665544 332 45555555555555553221 122 244555555555555543
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.3e-14 Score=130.40 Aligned_cols=163 Identities=20% Similarity=0.214 Sum_probs=83.2
Q ss_pred CCCCcEEEccCcCCCCcchhhh-hhhC-CCCCCcEEEccCccCCCcchHHh-hhccCCCEEEcccCCCCCCChhhhh---
Q 035693 129 LTELRELYLDNVDLSGRRTEWC-KAMS-FLPNLQVLNLSNCLLSDPINHHL-ANLLSLSVIRLRDNHAVSCQVPEFV--- 202 (348)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l--- 202 (348)
++.|+.|++++|.++......+ ..+. ...+|++|++++|.+++.....+ ..+++|++|++++|.. .......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHH
Confidence 3567777887777765433221 2222 23577777877777765433332 3445677777777733 32222222
Q ss_pred --hcCCCCCEEEccCCcCCC----cccccccCCCCccEEEccCCCCCCCCCC----CCCCCCCCcEEEcccCCCCCC---
Q 035693 203 --ANLLNLTTLDLSQCDLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLP----HFPKNSSLRNLNLKNTSFSGK--- 269 (348)
Q Consensus 203 --~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~ls~n~~~~~--- 269 (348)
...+.|++|++++|.++. .++..+...++|++|++++|.+...... .+...++|++|++++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 234567777777776653 2333344556666666666655432211 122234455555555554421
Q ss_pred -CCccccCCCCCCEEeecCCccCC
Q 035693 270 -LPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 270 -~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
+...+...++|++|+|++|.+.+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 11222233445555555555443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1.2e-11 Score=98.55 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=82.3
Q ss_pred CCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 208 LTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 208 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
.+.++++++.+. .+|..+ .++|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567788887776 456544 36788888888887666666777788888888888888855555667788888888888
Q ss_pred CccCCCCcccccCCCCCCEEeCCCCccCCcc
Q 035693 288 CNFTRPIPTSMANLTQLFHLDFSSNHFSDPI 318 (348)
Q Consensus 288 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 318 (348)
|++.+..+..+..+++|+.|+|++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888865666778888888888888887643
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=6.3e-15 Score=120.78 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCc-ccccCCCCCCEEeCCCCccCCccCc---------hhh
Q 035693 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIP-TSMANLTQLFHLDFSSNHFSDPIPT---------LRL 323 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~---------~~~ 323 (348)
++|++|++++|++++ ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|. ..+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 445555555555542 33 34455566666666666654211 2455566666666666666543322 123
Q ss_pred hhhcCCCeeecccCccc
Q 035693 324 YMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 324 ~~~~~L~~L~l~~n~l~ 340 (348)
..+++|+.|| ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 3346666665 45554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.5e-11 Score=98.00 Aligned_cols=108 Identities=21% Similarity=0.213 Sum_probs=90.2
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
.+.++++++.+.... ..+ .++|++|++++|.+++..+..+..+++|++|+|++|++.+..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999875432 223 37899999999999977788899999999999999999997777778999999999999
Q ss_pred CccCCccCchhhhhhcCCCeeecccCcccccC
Q 035693 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGI 343 (348)
Q Consensus 312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~i 343 (348)
|++.+ ++...+..+++|++|+|++|+++...
T Consensus 88 N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKS-IPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCE-eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99987 55554555689999999999987543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.5e-14 Score=118.54 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=103.7
Q ss_pred hcCCCCCEEEccCCcCCCcccc------cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccC
Q 035693 203 ANLLNLTTLDLSQCDLHGKFPE------KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGN 276 (348)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~ 276 (348)
.....++.+++..+.+.+..|. .+..+++|++|++++|.+.. ++.+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3444555555555555444333 67778888888888887654 345666788999999999888 67777777
Q ss_pred CCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCc-hhhhhhcCCCeeecccCcccccCCC
Q 035693 277 LENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPT-LRLYMSRNLNYLNLSSNDLTGGISS 345 (348)
Q Consensus 277 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~g~ip~ 345 (348)
+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.+ ++. ..+..+++|++|++++|++++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 7899999999999998 55 57788999999999999986 333 2344558999999999999877654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.9e-11 Score=96.64 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693 209 TTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC 288 (348)
Q Consensus 209 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n 288 (348)
+.++++++.+. .+|..+. +.|+.|++++|.+.......|..+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56667766665 5555443 56777777777765555556666777777777777777444444566777777777777
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 289 NFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
.+.+..+..+..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 77764444566777777777777777653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.3e-13 Score=123.89 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=125.7
Q ss_pred CCCCcEEEccCccCCCcchHHhhhc-----cCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccc----
Q 035693 156 LPNLQVLNLSNCLLSDPINHHLANL-----LSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKV---- 226 (348)
Q Consensus 156 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---- 226 (348)
.+.|++|++++|.++......+... ++|++|++++|.+...........+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999987555554443 6899999999954332233334456689999999999875433333
Q ss_pred -cCCCCccEEEccCCCCCCCCCCCC----CCCCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCCC----
Q 035693 227 -LQVPTLETLDLSYNSLLQGSLPHF----PKNSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTRP---- 293 (348)
Q Consensus 227 -~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~~---- 293 (348)
...++|++|++++|.+.......+ ...++|++|++++|.+.+. +...+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999998765443333 4477899999999988642 244556678999999999999863
Q ss_pred CcccccCCCCCCEEeCCCCccCCccCchhhhhh-cC---CCeee--cccCccc
Q 035693 294 IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS-RN---LNYLN--LSSNDLT 340 (348)
Q Consensus 294 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~---L~~L~--l~~n~l~ 340 (348)
++..+...++|++|+|++|+|.+.....+.... .. |+.+. +..+.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 344455678999999999999764444332221 12 66666 6666554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=3.7e-11 Score=96.02 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=88.2
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 232 LETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 232 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
-+.++++++++... +..+. ++|++|++++|.+.+..+..+..+++|+.|+|++|++.+..+..+..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36889999887433 22232 7899999999999977788899999999999999999996666678899999999999
Q ss_pred CccCCccCchhhhhhcCCCeeecccCcccc
Q 035693 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLTG 341 (348)
Q Consensus 312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g 341 (348)
|++.+ ++...+..+++|++|+|++|++..
T Consensus 91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKS-IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCC-CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Cccce-eCHHHhccccCCCEEEeCCCCccc
Confidence 99987 666555556899999999999874
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=4.5e-09 Score=95.20 Aligned_cols=271 Identities=13% Similarity=0.046 Sum_probs=154.4
Q ss_pred CCEEEEeCCCCccccccccCCcccccccccCEEeCCCCCCCCC--CCCCCCCCCcEEecCCC-------CCCCCcceeec
Q 035693 49 GHVIGLDLSAEPILIGSLENASGLFSLQYLQSLNLGFTLFYGF--PMPSSLPRLVTLDLSSR-------EPISGFSWRLE 119 (348)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~-------~~~~~~~~~~~ 119 (348)
.+|+++.+..+ + ..+.. .++.++++|+.+++..+ ++.. .....|.+|+.+.+..+ .|.........
T Consensus 71 ~~L~~i~lp~~--i-~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 71 RKVTEIKIPST--V-REIGE-FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTEEEEECCTT--C-CEECT-TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCceEEEeCCC--c-cCcch-hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 56888888643 2 23433 36788999999999654 2221 12226666666655432 11110001111
Q ss_pred CC------ChhhhcCCCCCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCC
Q 035693 120 IP------NFNFFQNLTELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHA 193 (348)
Q Consensus 120 ~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 193 (348)
.+ ....|.+|++|+.+.+.++- ..... ..+.++.+|+.+++..+ +......++..+..|+.+.+..+..
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~---~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHN---GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTTC-CEECT---TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cCccccccchhhhcccCCCcEEecCCcc-ceecc---ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 11 11457889999999997653 32332 45778888998888765 4443445666666666666654411
Q ss_pred CC--------------------CChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693 194 VS--------------------CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253 (348)
Q Consensus 194 ~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 253 (348)
.. ......+..+..++.+.+..+... .....+..+..++.+...... .....|..+
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~ 296 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGC 296 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTC
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccc
Confidence 10 011122333344444444333221 122233344444444443321 122345557
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeee
Q 035693 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLN 333 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 333 (348)
.+|+.+.+..+ +...-..+|..+.+|+.+++..+ +..+...++.++.+|+.+.+..+ +. .+....+..|++|+.++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVE 372 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEE
Confidence 77888887654 44233456778888999888644 65555677888889999998776 43 36666677778899998
Q ss_pred cccC
Q 035693 334 LSSN 337 (348)
Q Consensus 334 l~~n 337 (348)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8764
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.9e-10 Score=102.55 Aligned_cols=203 Identities=16% Similarity=0.229 Sum_probs=110.6
Q ss_pred CCCcEEEccCcCCCC-cc----hhhhhhhCCCCCCcEEEccCccCC---------CcchHHhhhccCCCEEEcccCCCCC
Q 035693 130 TELRELYLDNVDLSG-RR----TEWCKAMSFLPNLQVLNLSNCLLS---------DPINHHLANLLSLSVIRLRDNHAVS 195 (348)
Q Consensus 130 ~~L~~L~l~~~~~~~-~~----~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~ 195 (348)
..++.|.+....... .. ..+..++..+++|+.|.+...... ..+...+..+|+|+.|.++++....
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 356777777555331 11 122233445678888887654221 1244556677888888887762111
Q ss_pred CChhhhhhcCCCCCEEEccCCcCCCccccccc--CCCCccEEEccCC--CCC-CCCC----CCC--CCCCCCcEEEcccC
Q 035693 196 CQVPEFVANLLNLTTLDLSQCDLHGKFPEKVL--QVPTLETLDLSYN--SLL-QGSL----PHF--PKNSSLRNLNLKNT 264 (348)
Q Consensus 196 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~l~-~~~~----~~~--~~~~~L~~L~ls~n 264 (348)
++. + .+++|+.|++..+.+.......+. .+++|++|+++.+ ... ...+ +.+ ..+++|+.|++.+|
T Consensus 187 --l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 187 --IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp --CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred --ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 222 2 367788888877776543333332 5677888877531 111 1111 112 23677888888777
Q ss_pred CCCCCCCccc---cCCCCCCEEeecCCccCCC----CcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 265 SFSGKLPDSI---GNLENLASVDVSSCNFTRP----IPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 265 ~~~~~~~~~l---~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
.+....+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+.... ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 7653222222 2456778888877777653 233334467788888877777654333222211 245666665
Q ss_pred c
Q 035693 338 D 338 (348)
Q Consensus 338 ~ 338 (348)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 4
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=1.3e-09 Score=96.95 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred EEccCC-cCCCcccccccCCCCccEEEccC-CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCC
Q 035693 211 LDLSQC-DLHGKFPEKVLQVPTLETLDLSY-NSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSC 288 (348)
Q Consensus 211 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n 288 (348)
++.+++ .+. .+|. +..+++|+.|+|++ |.+.......|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 3444 55555555555553 5444333344555555555555555555444445555555666666666
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCccCC
Q 035693 289 NFTRPIPTSMANLTQLFHLDFSSNHFSD 316 (348)
Q Consensus 289 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 316 (348)
++.+..+..+..++ |+.|+|.+|++..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 55553333333333 5666666665554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=9.7e-10 Score=97.80 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=86.2
Q ss_pred EEEccCC-CCCCCCCCCCCCCCCCcEEEccc-CCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCC
Q 035693 234 TLDLSYN-SLLQGSLPHFPKNSSLRNLNLKN-TSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSS 311 (348)
Q Consensus 234 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 311 (348)
.++.+++ ++.. ++.+..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~--ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT--TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc--cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 6643 33377788999999996 999866667899999999999999999998888899999999999999
Q ss_pred CccCCccCchhhhhhcCCCeeecccCccc
Q 035693 312 NHFSDPIPTLRLYMSRNLNYLNLSSNDLT 340 (348)
Q Consensus 312 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 340 (348)
|++.+ +|...+... .|+.|+|.+|.+.
T Consensus 90 N~l~~-~~~~~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALES-LSWKTVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp SCCSC-CCSTTTCSC-CCCEEECCSSCCC
T ss_pred Cccce-eCHHHcccC-CceEEEeeCCCcc
Confidence 99987 666555553 4999999999886
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=4.2e-10 Score=100.31 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCCCcEEEcccCCCCCC----CCccccCCCCCCEEeecCCccCC
Q 035693 253 NSSLRNLNLKNTSFSGK----LPDSIGNLENLASVDVSSCNFTR 292 (348)
Q Consensus 253 ~~~L~~L~ls~n~~~~~----~~~~l~~~~~L~~L~L~~n~l~~ 292 (348)
+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 34455555555444321 11122233445555555554443
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=7.6e-08 Score=87.10 Aligned_cols=250 Identities=13% Similarity=0.108 Sum_probs=148.4
Q ss_pred cccccccccCEEeCCCCCCCCCC--CCCCCCCCcEEecCCCCCCCCcceeecCCChhhhcCCCCCcEEEccCc-------
Q 035693 70 SGLFSLQYLQSLNLGFTLFYGFP--MPSSLPRLVTLDLSSREPISGFSWRLEIPNFNFFQNLTELRELYLDNV------- 140 (348)
Q Consensus 70 ~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~------- 140 (348)
.++.++.+|+.+.+..+ ++..+ .-.+|++|+.+++..+ +. .++ ...+.+|+.|+.+.+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-------~I~-~~aF~~c~~L~~i~~p~~l~~i~~~ 134 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-------MIG-RCTFSGCYALKSILLPLMLKSIGVE 134 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-------EEC-TTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-------Ecc-chhhcccccchhhcccCceeeecce
Confidence 36888999999999754 44321 2338999999999754 11 111 122555555555544321
Q ss_pred --------------CCCCcchhhhhhhCCCCCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcCC
Q 035693 141 --------------DLSGRRTEWCKAMSFLPNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLL 206 (348)
Q Consensus 141 --------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 206 (348)
....... .+|.++.+|+.+.+..+ +......++..+.+|+.+.+..+ ........+.++.
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~---~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGD---EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECT---TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCT
T ss_pred eeecccccccccCccccccch---hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcccc
Confidence 0111111 45788999999999765 34445567888999999999876 2223345566777
Q ss_pred CCCEEEccCCcCCC---------------------cccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCC
Q 035693 207 NLTTLDLSQCDLHG---------------------KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTS 265 (348)
Q Consensus 207 ~L~~L~l~~~~~~~---------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~ 265 (348)
.|+.+.+..+...- .....+..+..++.+.+..+. .......|..+..++.+......
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee
Confidence 77766665442210 001122333444444444331 22233334444455555443332
Q ss_pred CCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcccccCC
Q 035693 266 FSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDLTGGIS 344 (348)
Q Consensus 266 ~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~g~ip 344 (348)
+. ...+..+.+|+.+.+..+ +..+...++.++++|+.++|..+ +. .+....+..|.+|+.+++..+ ++ .|+
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 21 234566788898888654 55555667888999999999754 43 366667777899999999776 43 443
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.88 E-value=1.2e-07 Score=85.74 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=51.8
Q ss_pred ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCC
Q 035693 226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLF 305 (348)
Q Consensus 226 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 305 (348)
|..+..|+.+.+... .......+|..+..|+.+.+.. .++.....+|..+.+|+.+.+..+ ++.+...++.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 344455555555433 2223334444555555555542 232122334555556666665432 3333344555556666
Q ss_pred EEeCCCCccCCccCchhhhhhcCCCeeecccC
Q 035693 306 HLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSN 337 (348)
Q Consensus 306 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 337 (348)
.+.+..+ ++. +....+..|.+|+.+++.++
T Consensus 338 ~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTK-IPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCB-CCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCE-EhHhHhhCCCCCCEEEECCc
Confidence 6666433 322 44444555556666665554
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.76 E-value=1.7e-07 Score=84.82 Aligned_cols=132 Identities=14% Similarity=0.235 Sum_probs=89.6
Q ss_pred hhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCC
Q 035693 200 EFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLEN 279 (348)
Q Consensus 200 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~ 279 (348)
.+|..+..|+.+.+..+... .....+..++.|+.+.+... +......+|..+.+|+++.+..+ ++.....+|..+.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34667777888887655432 33446778899999999754 56666778888999999999765 54344567889999
Q ss_pred CCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhhcCCCeeecccCcc
Q 035693 280 LASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMSRNLNYLNLSSNDL 339 (348)
Q Consensus 280 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 339 (348)
|+.+.+..+ +..+...++.++++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCE
Confidence 999999654 666667789999999999999876432 1223447899888877644
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=3.8e-08 Score=79.16 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=52.2
Q ss_pred hcCCCCCcEEEccCc-CCCCcch-hhhhhhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccCCCCCC---
Q 035693 126 FQNLTELRELYLDNV-DLSGRRT-EWCKAMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDNHAVSC--- 196 (348)
Q Consensus 126 ~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 196 (348)
+...+.|++|+|++| .+.+... .+...+...++|++|++++|.+.+. +...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444555555555555 5543222 1223344455555555555555432 223334445555555555532211
Q ss_pred ChhhhhhcCCCCCEEEc--cCCcCCCc----ccccccCCCCccEEEccCCC
Q 035693 197 QVPEFVANLLNLTTLDL--SQCDLHGK----FPEKVLQVPTLETLDLSYNS 241 (348)
Q Consensus 197 ~~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 241 (348)
.+...+...+.|++|++ ++|.+... +.+.+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 12233444445555555 44554421 22233333445555554444
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.2e-08 Score=80.54 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=61.5
Q ss_pred hhhhhhCCCCCCcEEEccCc-cCCCc----chHHhhhccCCCEEEcccCCCCCC---ChhhhhhcCCCCCEEEccCCcCC
Q 035693 148 EWCKAMSFLPNLQVLNLSNC-LLSDP----INHHLANLLSLSVIRLRDNHAVSC---QVPEFVANLLNLTTLDLSQCDLH 219 (348)
Q Consensus 148 ~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~ 219 (348)
.+...+...+.|++|++++| .+.+. +...+...++|++|++++|.+... .+...+...+.|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456777889999999998 87753 334555667888888888843221 13344556677888888888776
Q ss_pred Cc----ccccccCCCCccEEEc--cCCCCC
Q 035693 220 GK----FPEKVLQVPTLETLDL--SYNSLL 243 (348)
Q Consensus 220 ~~----~~~~l~~~~~L~~L~l--~~~~l~ 243 (348)
.. +...+...+.|++|++ ++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 42 3344445555666666 445443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.53 E-value=4.1e-06 Score=75.16 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=54.2
Q ss_pred cccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCC
Q 035693 225 KVLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQL 304 (348)
Q Consensus 225 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 304 (348)
.+..+..|+.+.+..+ +.......|..+.+|+.+.+..+ +.......+..+.+|+.+.+.++.+..+...++.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555666655443 33334444555555666655433 221222345555666666666555555444555566666
Q ss_pred CEEeCCCCccCCccCchhhhhhcCCCeeecc
Q 035693 305 FHLDFSSNHFSDPIPTLRLYMSRNLNYLNLS 335 (348)
Q Consensus 305 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 335 (348)
+.+.|..+ +. .+....+..|.+|+++.+.
T Consensus 313 ~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 66666443 22 2334444455555555553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=2.4e-07 Score=72.99 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCcEEEccCcCCCCcchhhhhhhCCCCCCcEEEccCcc-CCCcchHHhhhc----cCCCEEEcccCCCCCCChhhhhhcC
Q 035693 131 ELRELYLDNVDLSGRRTEWCKAMSFLPNLQVLNLSNCL-LSDPINHHLANL----LSLSVIRLRDNHAVSCQVPEFVANL 205 (348)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~l 205 (348)
+|+.|++++|.+++... ..+..+++|++|++++|. +++.-...+..+ ++|++|++++|..+++.....+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34444444444433222 233444444444444442 333222233321 2444444444433333333344444
Q ss_pred CCCCEEEccCC
Q 035693 206 LNLTTLDLSQC 216 (348)
Q Consensus 206 ~~L~~L~l~~~ 216 (348)
++|+.|++++|
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 44444444444
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.8e-07 Score=72.62 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=62.9
Q ss_pred CCCcEEEccCccCCCcchHHhhhccCCCEEEcccCCCCCCChhhhhhcC----CCCCEEEccCCc-CCCcccccccCCCC
Q 035693 157 PNLQVLNLSNCLLSDPINHHLANLLSLSVIRLRDNHAVSCQVPEFVANL----LNLTTLDLSQCD-LHGKFPEKVLQVPT 231 (348)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~ 231 (348)
..|++|++++|.+++.-...+..+++|++|+|++|..+++.....+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688999999888876666778888999999998876776666666654 368888888875 55544445566777
Q ss_pred ccEEEccCCC
Q 035693 232 LETLDLSYNS 241 (348)
Q Consensus 232 L~~L~l~~~~ 241 (348)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=5.1e-07 Score=76.48 Aligned_cols=83 Identities=27% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCCCCCcEEEccCccCCC--cchHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCccc-------c
Q 035693 154 SFLPNLQVLNLSNCLLSD--PINHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFP-------E 224 (348)
Q Consensus 154 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------~ 224 (348)
.++++|++|++++|.+++ .++..+..+++|+.|+|++|.+........+..+ +|++|++.+|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 346677777777777665 2345556667777777777643322111222233 67777777776654333 1
Q ss_pred cccCCCCccEEEc
Q 035693 225 KVLQVPTLETLDL 237 (348)
Q Consensus 225 ~l~~~~~L~~L~l 237 (348)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2445566666553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=8.8e-05 Score=66.39 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=103.1
Q ss_pred hHHhhhccCCCEEEcccCCCCCCChhhhhhcCCCCCEEEccCCcCCCcccccccCCCCccEEEccCCCCCCCCCCCCCCC
Q 035693 174 NHHLANLLSLSVIRLRDNHAVSCQVPEFVANLLNLTTLDLSQCDLHGKFPEKVLQVPTLETLDLSYNSLLQGSLPHFPKN 253 (348)
Q Consensus 174 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 253 (348)
...+..+.+|+.+.+..+ ........+.++..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|..+
T Consensus 210 ~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp TTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred ecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 345566678888888664 22234456778888999988765 33233456777889999998755 555666778889
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCccCchhhhhh
Q 035693 254 SSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDPIPTLRLYMS 326 (348)
Q Consensus 254 ~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 326 (348)
.+|+.+.+.++.++..-..+|..+.+|+.+.+..+ +..+...++.++++|+.+.+..+ ++. +....+..+
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~-I~~~aF~~c 355 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL-IESGAFEGS 355 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE-ECTTTTTTS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE-EchhHhhCC
Confidence 99999999888777444567888899999999754 66555678888999999988654 332 444444454
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2.3e-06 Score=72.45 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCCcEEEcccCCCCC--CCCccccCCCCCCEEeecCCccCCCCcccccCCC--CCCEEeCCCCccCCccCc------hh
Q 035693 253 NSSLRNLNLKNTSFSG--KLPDSIGNLENLASVDVSSCNFTRPIPTSMANLT--QLFHLDFSSNHFSDPIPT------LR 322 (348)
Q Consensus 253 ~~~L~~L~ls~n~~~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~------~~ 322 (348)
++.|++|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|. .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3456666666666654 2344555677777777777777763 2233333 788888888888765542 23
Q ss_pred hhhhcCCCeee
Q 035693 323 LYMSRNLNYLN 333 (348)
Q Consensus 323 ~~~~~~L~~L~ 333 (348)
...+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44557777776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=2.5e-06 Score=68.43 Aligned_cols=115 Identities=11% Similarity=0.175 Sum_probs=58.7
Q ss_pred hhhhcCCCCCEEEccCC-cCCC----cccccccCCCCccEEEccCCCCCCCCCCCCCC----CCCCcEEEcccCCCCCC-
Q 035693 200 EFVANLLNLTTLDLSQC-DLHG----KFPEKVLQVPTLETLDLSYNSLLQGSLPHFPK----NSSLRNLNLKNTSFSGK- 269 (348)
Q Consensus 200 ~~l~~l~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~----~~~L~~L~ls~n~~~~~- 269 (348)
..+.+-+.|++|+++++ .+.. .+.+.+..-+.|+.|+|++|.+.+.....+.. .+.|++|+|+.|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445567777777764 5542 23445555566777777777665555444432 45566666666665421
Q ss_pred ---CCccccCCCCCCEEeecCCc---cCC----CCcccccCCCCCCEEeCCCCcc
Q 035693 270 ---LPDSIGNLENLASVDVSSCN---FTR----PIPTSMANLTQLFHLDFSSNHF 314 (348)
Q Consensus 270 ---~~~~l~~~~~L~~L~L~~n~---l~~----~~~~~l~~~~~L~~L~l~~n~l 314 (348)
+.+.+..-+.|++|+|++|. +.. .+...+..-+.|..|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 12223333445555555432 221 1233334444555555554433
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=9.9e-05 Score=59.13 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=16.8
Q ss_pred hhCCCCCCcEEEccCccCCCc----chHHhhhccCCCEEEcccC
Q 035693 152 AMSFLPNLQVLNLSNCLLSDP----INHHLANLLSLSVIRLRDN 191 (348)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~ 191 (348)
.+.....|++|+|++|.+.+. +...+.....|++|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 334444444444444444321 2233333344444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0074 Score=44.84 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=18.4
Q ss_pred CCcEEEcccCCCCCCCCccccCCCCCCEEeecCCccC
Q 035693 255 SLRNLNLKNTSFSGKLPDSIGNLENLASVDVSSCNFT 291 (348)
Q Consensus 255 ~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~n~l~ 291 (348)
+|++|+|++|+++..-+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555333334444555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0066 Score=45.14 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=47.8
Q ss_pred cEEEcccCCCC-CCCCccccCCCCCCEEeecCCccCCCCcccccCCCCCCEEeCCCCccCCc
Q 035693 257 RNLNLKNTSFS-GKLPDSIGNLENLASVDVSSCNFTRPIPTSMANLTQLFHLDFSSNHFSDP 317 (348)
Q Consensus 257 ~~L~ls~n~~~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 317 (348)
..++.+++.++ ..+|..+. ++|++|+|++|.++...+..+..+++|+.|+|++|++..+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 47888888876 35665443 4799999999999997777888899999999999999753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.98 E-value=26 Score=23.98 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=14.1
Q ss_pred ccCCCCccEEEccCCCCCCCCCCCCCCCCCCcEEEc
Q 035693 226 VLQVPTLETLDLSYNSLLQGSLPHFPKNSSLRNLNL 261 (348)
Q Consensus 226 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 261 (348)
|..+..|+.+.|-.+ +......+|..+.+|+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 334444444444332 23333334444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.58 E-value=49 Score=22.58 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCcEEEcccCCCCCCCCccccCCCCCCEEeecC
Q 035693 242 LLQGSLPHFPKNSSLRNLNLKNTSFSGKLPDSIGNLENLASVDVSS 287 (348)
Q Consensus 242 l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~~~~L~~L~L~~ 287 (348)
++.....+|..+.+|+++.|-.+ ++..-..+|..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44445566777778888877664 3334445677778888877754
Done!