BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035694
METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT
LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL
KLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDG
AITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSR
MSVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMRR
SKSNNNNGNSLVKKRRTSIFHQIKDFIVRSITRLFG

High Scoring Gene Products

Symbol, full name Information P value
WEB1
WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
protein from Arabidopsis thaliana 5.5e-10
AT4G33390 protein from Arabidopsis thaliana 3.6e-06
C09E7.5 gene from Caenorhabditis elegans 0.00018
rrbp1b
ribosome binding protein 1 homolog b (dog)
gene_product from Danio rerio 0.00085
homer2
homer homolog 2 (Drosophila)
gene_product from Danio rerio 0.00095

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035694
        (336 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2066301 - symbol:WEB1 "WEAK CHLOROPLAST MOVEME...   170  5.5e-10   1
TAIR|locus:2119206 - symbol:AT4G33390 "AT4G33390" species...   137  3.6e-06   1
WB|WBGene00015639 - symbol:C09E7.5 species:6239 "Caenorha...   119  0.00018   1
ZFIN|ZDB-GENE-030429-36 - symbol:rrbp1b "ribosome binding...   117  0.00085   1
ZFIN|ZDB-GENE-050522-417 - symbol:homer2 "homer homolog 2...   111  0.00095   1


>TAIR|locus:2066301 [details] [associations]
            symbol:WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT
            1" species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009903 "chloroplast
            avoidance movement" evidence=IMP] [GO:0009904 "chloroplast
            accumulation movement" evidence=IMP] GO:GO:0005829 GO:GO:0005886
            EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:NOG12793
            EMBL:AC002505 GO:GO:0009904 GO:GO:0009903 InterPro:IPR008545
            Pfam:PF05701 EMBL:AK228775 IPI:IPI00540846 PIR:T00990
            RefSeq:NP_180225.1 UniGene:At.27591 ProteinModelPortal:O48724
            IntAct:O48724 PaxDb:O48724 PRIDE:O48724 EnsemblPlants:AT2G26570.1
            GeneID:817198 KEGG:ath:AT2G26570 TAIR:At2g26570
            HOGENOM:HOG000240115 InParanoid:O48724 OMA:LPISEYH PhylomeDB:O48724
            ProtClustDB:CLSN2693984 Genevestigator:O48724 Uniprot:O48724
        Length = 807

 Score = 170 (64.9 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 60/222 (27%), Positives = 102/222 (45%)

Query:     7 ERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN 66
             E   +P  + +   AK  EL +    +++A        L S  L  ELE+ K+TLAS K 
Sbjct:   451 ENMSHPDLHAAVASAKK-ELEEVNVNIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQ 509

Query:    67 RCSMSNMIVSELQAELDSTTKSIMS--KKEEEVNATM--MIKELSQALAETRQELEAL-K 121
             R  M+++ V+ ++AE+D T   I S   KE++    M  + K+L QA AE   E ++L +
Sbjct:   510 REGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQA-AEEADEAKSLAE 568

Query:   122 LATDEERRARSNXXXXXXXXXXXXX---TSQLALRATRIEXXXXXXXXXX---XXXXIGI 175
             +A +E R+A+                   +Q  + A +                   +  
Sbjct:   569 VAREELRKAKEEAEQAKAGASTMESRLFAAQKEIEAAKASERLALAAIKALEESESTLKA 628

Query:   176 SETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQRE 217
             ++TD   +V ++ EEY+ L +RA E   LA  RV+ ++ + E
Sbjct:   629 NDTDSPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIE 670


>TAIR|locus:2119206 [details] [associations]
            symbol:AT4G33390 "AT4G33390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009827 "plant-type cell wall modification"
            evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035678 EMBL:AL161583
            eggNOG:NOG12793 InterPro:IPR008545 Pfam:PF05701
            HOGENOM:HOG000240115 ProtClustDB:CLSN2693984 EMBL:DQ446890
            IPI:IPI00525872 PIR:T05990 RefSeq:NP_195065.1 UniGene:At.54588
            ProteinModelPortal:Q9SZB6 PaxDb:Q9SZB6 PRIDE:Q9SZB6
            EnsemblPlants:AT4G33390.1 GeneID:829476 KEGG:ath:AT4G33390
            TAIR:At4g33390 InParanoid:Q9SZB6 OMA:IDITRCE PhylomeDB:Q9SZB6
            Genevestigator:Q9SZB6 Uniprot:Q9SZB6
        Length = 779

 Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 53/214 (24%), Positives = 92/214 (42%)

Query:    16 TSDLEAKTA----ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMS 71
             T+D++   A    EL +  A +++A        + S  L  E+++ K+ L S K R  M+
Sbjct:   447 TTDIQKAVASAKKELEEVNANVEKATSEVNCLKVASSSLRLEIDKEKSALDSLKQREGMA 506

Query:    72 NMIVSELQAELDSTTKSI--MSKKEEEVNATM--MIKELSQALAETRQELEALKLATDEE 127
             ++ V+ L+AE+D T   I  +  KE+E    M  + K+L QA  E  +     +LA +E 
Sbjct:   507 SVTVASLEAEIDITRCEIALVKSKEKETREEMVELPKQLQQASQEADEAKSFAELAREEL 566

Query:   128 RRARSNXXXXXXXXXXXXX---TSQLALRATRIEXXXXXXXXXXXXXXIGISE---TDGA 181
             R+++                   +Q  + A +                   S+    D  
Sbjct:   567 RKSQEEAEQAKAGASTMESRLFAAQKEIEAIKASERLALAAIKALQESESSSKENAVDSP 626

Query:   182 ITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQ 215
              TV +T EEY+ L +RA E    A  RV+ ++ +
Sbjct:   627 RTVTLTIEEYYELSKRAHEAEEAANARVAAAVSE 660


>WB|WBGene00015639 [details] [associations]
            symbol:C09E7.5 species:6239 "Caenorhabditis elegans"
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
            Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:NOG240767
            EMBL:FO080464 GeneTree:ENSGT00530000064787 RefSeq:NP_498443.2
            ProteinModelPortal:Q9N5Y9 SMR:Q9N5Y9 EnsemblMetazoa:C09E7.5
            GeneID:182451 KEGG:cel:CELE_C09E7.5 UCSC:C09E7.5 CTD:182451
            WormBase:C09E7.5 InParanoid:Q9N5Y9 OMA:QSENETM NextBio:917626
            Uniprot:Q9N5Y9
        Length = 457

 Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 39/135 (28%), Positives = 68/135 (50%)

Query:     3 TE-DKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATL 61
             TE +K+ KE  G+ T      +  + + +A+LKR  D A +       L++++ RL   L
Sbjct:   131 TESEKKLKETNGKVTKSRNQLSERVSELEAQLKREADTAQKPKQADPDLLNKVGRLNDLL 190

Query:    62 ASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA-- 119
              S+K    +    V++ +AEL+ST K++  K   E   T++ ++L Q    TR  LEA  
Sbjct:   191 TSEKQNTRVLQEEVAKFKAELESTNKTMKQKLVHE-RKTLIKEKLEQGKEITRL-LEANA 248

Query:   120 -LKLATDEERRARSN 133
              L +  +E++    N
Sbjct:   249 HLSIQNEEQKNLIQN 263


>ZFIN|ZDB-GENE-030429-36 [details] [associations]
            symbol:rrbp1b "ribosome binding protein 1 homolog b
            (dog)" species:7955 "Danio rerio" [GO:0030176 "integral to
            endoplasmic reticulum membrane" evidence=IEA] [GO:0015031 "protein
            transport" evidence=IEA] InterPro:IPR007794 Pfam:PF05104
            ZFIN:ZDB-GENE-030429-36 GO:GO:0015031 GO:GO:0030176
            HOVERGEN:HBG061483 EMBL:AY398408 IPI:IPI00554351 UniGene:Dr.13516
            ProteinModelPortal:Q6TGU8 PRIDE:Q6TGU8 InParanoid:Q6TGU8
            NextBio:20888490 ArrayExpress:Q6TGU8 Bgee:Q6TGU8 Uniprot:Q6TGU8
        Length = 978

 Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
 Identities = 38/143 (26%), Positives = 73/143 (51%)

Query:     5 DKERKENPGRNTSDLEAKTAELVKTKAELKRAKD--NAMQSWLDS-----KPLIDELERL 57
             +++ K+         +A   +L K K EL+ A+   N +Q+ +D+     K L D  ER+
Sbjct:   450 EEQLKQTQASCVGTEQALQKKLDKLKEELQEAQQGSNKLQTQVDAAKEQAKTLADLQERM 509

Query:    58 KATLASDKNRCSMSNMIVSELQ--AELDSTTKSIMSKKEEEVNATMMIKE-----LSQAL 110
             + T    KNRC    ++ ++     E+++T + I S++ E++ +++  +E     +   L
Sbjct:   510 RVTETELKNRCEELEILRAQENPTVEIEATVQKINSEEVEQLRSSLKEREEQLTSMEAEL 569

Query:   111 AETRQELEALKLATDEERRARSN 133
              + R+ELE +K A  EE + R N
Sbjct:   570 TQLREELETVKRAQAEETQNRVN 592


>ZFIN|ZDB-GENE-050522-417 [details] [associations]
            symbol:homer2 "homer homolog 2 (Drosophila)"
            species:7955 "Danio rerio" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000697
            Pfam:PF00568 PROSITE:PS50229 SMART:SM00461 ZFIN:ZDB-GENE-050522-417
            Gene3D:2.30.29.30 InterPro:IPR011993 eggNOG:NOG68331
            HOVERGEN:HBG051918 EMBL:BC159234 IPI:IPI00889402 UniGene:Dr.119024
            ProteinModelPortal:B0JZL8 SMR:B0JZL8 Uniprot:B0JZL8
        Length = 350

 Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
 Identities = 34/122 (27%), Positives = 66/122 (54%)

Query:     5 DKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDE-LERLKATLAS 63
             D E+  + G  T+ L+A+  +L+K+  E  +  ++ +Q+  DS   + E L+  +++  S
Sbjct:   148 DDEKISHSGPETAALKAEN-DLLKSAVEESKKCESELQALRDSSARLQEALQEAESSAES 206

Query:    64 DKNRCSMS----NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA 119
              K + + S    N + S++ AEL+   K +  ++E     T+ I+EL   L + +QELE 
Sbjct:   207 WKTQATRSLEENNQLRSKI-AELELQCKELSVERERNAQLTVRIQELEADLQDKQQELEN 265

Query:   120 LK 121
             L+
Sbjct:   266 LR 267


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.122   0.309    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      336       276   0.00079  115 3  10 23  0.44    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  226 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.22u 0.15s 38.37t   Elapsed:  00:00:02
  Total cpu time:  38.22u 0.15s 38.37t   Elapsed:  00:00:02
  Start:  Fri May 10 04:02:48 2013   End:  Fri May 10 04:02:50 2013

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