Query 035694
Match_columns 336
No_of_seqs 96 out of 98
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 4.1E-42 8.8E-47 349.7 29.1 223 15-237 279-511 (522)
2 PF05701 WEMBL: Weak chloropla 98.3 0.00025 5.4E-09 73.5 24.7 163 38-236 274-443 (522)
3 TIGR02168 SMC_prok_B chromosom 97.1 0.5 1.1E-05 51.6 27.4 21 316-336 1030-1050(1179)
4 TIGR02168 SMC_prok_B chromosom 96.6 1.5 3.3E-05 47.9 28.1 40 21-60 674-713 (1179)
5 KOG0977 Nuclear envelope prote 95.8 2.8 6E-05 44.7 22.2 201 17-221 92-300 (546)
6 PF00261 Tropomyosin: Tropomyo 95.1 3 6.4E-05 39.2 19.0 122 40-161 108-229 (237)
7 PRK11637 AmiB activator; Provi 95.0 4.6 0.0001 40.8 22.7 75 22-96 45-119 (428)
8 TIGR02169 SMC_prok_A chromosom 95.0 7.3 0.00016 43.0 27.5 6 331-336 616-621 (1164)
9 COG1579 Zn-ribbon protein, pos 94.7 4.2 9.2E-05 39.1 18.6 11 184-194 205-215 (239)
10 PF07888 CALCOCO1: Calcium bin 94.4 6.2 0.00014 42.1 20.2 52 184-236 366-418 (546)
11 COG1196 Smc Chromosome segrega 94.3 13 0.00027 42.7 28.7 78 18-95 689-766 (1163)
12 COG1579 Zn-ribbon protein, pos 94.2 5.6 0.00012 38.3 18.3 65 109-173 90-154 (239)
13 PF05335 DUF745: Protein of un 94.0 5.1 0.00011 37.2 17.2 116 54-169 62-177 (188)
14 PF00261 Tropomyosin: Tropomyo 93.9 5.6 0.00012 37.3 17.4 146 20-165 4-156 (237)
15 PF10174 Cast: RIM-binding pro 93.9 3 6.5E-05 46.1 17.1 147 19-174 5-166 (775)
16 COG1196 Smc Chromosome segrega 93.8 15 0.00033 42.0 28.1 75 19-93 669-743 (1163)
17 PRK11637 AmiB activator; Provi 93.4 9.7 0.00021 38.5 22.7 79 16-94 46-124 (428)
18 PRK09039 hypothetical protein; 93.3 6.1 0.00013 39.4 16.9 48 106-153 114-161 (343)
19 PF09726 Macoilin: Transmembra 92.1 21 0.00045 39.2 20.1 157 18-174 419-600 (697)
20 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.0 7.4 0.00016 33.5 15.4 47 107-153 58-104 (132)
21 TIGR00606 rad50 rad50. This fa 91.5 33 0.00071 39.9 26.7 74 19-92 760-841 (1311)
22 PF07888 CALCOCO1: Calcium bin 90.9 25 0.00055 37.7 20.4 51 19-69 145-195 (546)
23 KOG0994 Extracellular matrix g 90.8 26 0.00055 41.0 19.4 148 19-170 1449-1618(1758)
24 COG4942 Membrane-bound metallo 89.9 27 0.00058 36.3 21.0 141 24-164 38-192 (420)
25 PF08317 Spc7: Spc7 kinetochor 89.7 17 0.00036 35.8 15.5 114 46-162 150-263 (325)
26 PF08317 Spc7: Spc7 kinetochor 89.7 22 0.00047 35.0 18.1 49 21-69 153-201 (325)
27 KOG0250 DNA repair protein RAD 89.1 49 0.0011 38.2 22.3 180 18-197 317-516 (1074)
28 KOG0996 Structural maintenance 89.0 52 0.0011 38.4 20.6 106 71-176 491-612 (1293)
29 PF10498 IFT57: Intra-flagella 88.6 21 0.00045 36.2 15.5 124 30-153 219-352 (359)
30 PHA02562 46 endonuclease subun 88.5 32 0.00069 35.3 19.2 64 32-95 214-277 (562)
31 PRK02224 chromosome segregatio 87.4 49 0.0011 36.2 22.8 37 126-162 360-396 (880)
32 KOG1029 Endocytic adaptor prot 87.0 50 0.0011 37.3 17.9 145 23-174 457-609 (1118)
33 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.7 19 0.00042 30.9 14.1 33 52-84 3-35 (132)
34 TIGR01843 type_I_hlyD type I s 86.4 34 0.00073 33.4 20.5 23 313-335 398-420 (423)
35 PRK09039 hypothetical protein; 86.4 38 0.00082 33.9 20.3 54 102-155 131-184 (343)
36 PF10174 Cast: RIM-binding pro 86.3 49 0.0011 36.9 17.8 114 23-138 52-165 (775)
37 PRK02224 chromosome segregatio 85.8 59 0.0013 35.6 30.7 15 187-201 535-549 (880)
38 PF10498 IFT57: Intra-flagella 85.8 7 0.00015 39.5 10.4 89 31-119 252-346 (359)
39 KOG0933 Structural maintenance 84.7 60 0.0013 37.5 17.5 211 18-236 788-1009(1174)
40 KOG0994 Extracellular matrix g 84.6 75 0.0016 37.5 18.2 50 107-156 1583-1632(1758)
41 KOG0971 Microtubule-associated 84.5 21 0.00045 40.7 13.8 166 52-224 255-448 (1243)
42 PRK04778 septation ring format 84.1 62 0.0013 34.3 17.8 201 18-220 283-507 (569)
43 PRK04863 mukB cell division pr 83.5 79 0.0017 37.8 18.7 44 19-62 295-338 (1486)
44 smart00787 Spc7 Spc7 kinetocho 83.2 51 0.0011 32.7 16.2 110 48-157 147-260 (312)
45 PRK15178 Vi polysaccharide exp 82.9 56 0.0012 34.1 15.5 75 17-91 242-332 (434)
46 KOG0250 DNA repair protein RAD 82.8 80 0.0017 36.5 17.6 200 22-225 680-907 (1074)
47 TIGR00606 rad50 rad50. This fa 82.7 96 0.0021 36.2 18.9 6 80-85 888-893 (1311)
48 KOG0933 Structural maintenance 82.4 66 0.0014 37.2 16.7 138 21-165 784-921 (1174)
49 PF12128 DUF3584: Protein of u 82.3 1.1E+02 0.0023 35.7 21.8 152 20-173 603-755 (1201)
50 KOG0964 Structural maintenance 82.1 62 0.0013 37.3 16.3 107 50-156 395-501 (1200)
51 KOG0996 Structural maintenance 81.7 1.2E+02 0.0025 35.8 25.6 125 25-152 385-509 (1293)
52 PF09730 BicD: Microtubule-ass 81.5 94 0.002 34.6 19.1 92 66-160 359-450 (717)
53 PF00038 Filament: Intermediat 81.0 53 0.0011 31.4 22.2 38 22-59 101-138 (312)
54 KOG0161 Myosin class II heavy 80.9 1.5E+02 0.0033 36.6 24.1 70 20-89 1445-1514(1930)
55 PF06818 Fez1: Fez1; InterPro 80.7 52 0.0011 31.1 13.3 92 21-112 14-105 (202)
56 PF10473 CENP-F_leu_zip: Leuci 80.7 41 0.0009 29.9 15.5 56 31-86 10-65 (140)
57 PRK04778 septation ring format 80.3 85 0.0018 33.3 19.2 157 17-174 256-421 (569)
58 TIGR02680 conserved hypothetic 80.2 1.3E+02 0.0029 35.5 19.5 68 107-174 332-399 (1353)
59 PF10473 CENP-F_leu_zip: Leuci 79.5 45 0.00098 29.7 18.2 77 75-151 26-102 (140)
60 TIGR01843 type_I_hlyD type I s 79.2 65 0.0014 31.4 20.8 15 24-38 81-95 (423)
61 PF12718 Tropomyosin_1: Tropom 79.0 45 0.00098 29.4 18.0 119 30-152 6-124 (143)
62 TIGR02680 conserved hypothetic 78.7 1.5E+02 0.0032 35.1 28.2 50 72-121 275-324 (1353)
63 PF05335 DUF745: Protein of un 78.4 58 0.0013 30.3 16.2 85 37-128 94-178 (188)
64 PF09726 Macoilin: Transmembra 76.0 22 0.00049 39.0 10.6 42 49-90 422-463 (697)
65 smart00787 Spc7 Spc7 kinetocho 75.0 93 0.002 30.9 16.3 39 28-66 155-193 (312)
66 TIGR03007 pepcterm_ChnLen poly 74.4 1.1E+02 0.0023 31.4 19.3 73 19-91 206-293 (498)
67 PF04111 APG6: Autophagy prote 74.2 51 0.0011 32.6 11.8 27 133-159 103-129 (314)
68 PRK10884 SH3 domain-containing 73.9 61 0.0013 30.4 11.7 17 49-65 90-106 (206)
69 PF12718 Tropomyosin_1: Tropom 73.9 63 0.0014 28.5 14.7 104 43-157 5-108 (143)
70 KOG0249 LAR-interacting protei 73.7 1E+02 0.0023 34.5 14.7 120 19-142 137-257 (916)
71 PF05667 DUF812: Protein of un 73.3 1.4E+02 0.0031 32.3 19.2 46 19-64 330-375 (594)
72 TIGR01010 BexC_CtrB_KpsE polys 73.0 99 0.0022 30.4 15.6 27 130-156 279-305 (362)
73 PF08614 ATG16: Autophagy prot 72.5 42 0.00091 30.5 10.1 26 132-157 147-172 (194)
74 PF10186 Atg14: UV radiation r 71.8 86 0.0019 29.2 19.2 29 137-165 120-148 (302)
75 COG2433 Uncharacterized conser 70.3 1.1E+02 0.0023 33.6 13.7 50 19-68 417-466 (652)
76 KOG0979 Structural maintenance 69.7 1.1E+02 0.0024 35.3 14.2 19 30-48 201-219 (1072)
77 PF05384 DegS: Sensor protein 69.6 88 0.0019 28.4 17.6 120 28-164 6-126 (159)
78 KOG0972 Huntingtin interacting 68.8 52 0.0011 33.2 10.4 69 28-96 256-324 (384)
79 PF15254 CCDC14: Coiled-coil d 68.0 1.5E+02 0.0032 33.5 14.4 116 43-165 385-530 (861)
80 KOG4674 Uncharacterized conser 68.0 2.6E+02 0.0056 34.5 17.3 137 15-154 563-714 (1822)
81 KOG4674 Uncharacterized conser 67.6 2.9E+02 0.0064 34.0 17.6 141 19-161 807-958 (1822)
82 PF14915 CCDC144C: CCDC144C pr 66.6 1.5E+02 0.0032 29.8 13.8 120 5-134 85-212 (305)
83 KOG0018 Structural maintenance 66.0 1.1E+02 0.0024 35.5 13.3 118 17-137 849-990 (1141)
84 TIGR00998 8a0101 efflux pump m 65.3 1.3E+02 0.0028 28.7 12.8 35 23-57 79-113 (334)
85 PHA02562 46 endonuclease subun 64.0 1.8E+02 0.0039 29.9 19.2 20 24-43 181-200 (562)
86 COG4942 Membrane-bound metallo 63.5 2E+02 0.0043 30.2 21.7 68 19-86 40-107 (420)
87 PF00769 ERM: Ezrin/radixin/mo 63.3 1.4E+02 0.0031 28.5 15.4 94 71-164 31-124 (246)
88 PF10481 CENP-F_N: Cenp-F N-te 61.8 1.2E+02 0.0026 30.3 11.2 69 19-87 41-109 (307)
89 PRK12472 hypothetical protein; 61.2 2E+02 0.0044 30.8 13.5 106 113-238 195-300 (508)
90 PF05483 SCP-1: Synaptonemal c 60.8 2.8E+02 0.0061 31.1 16.1 116 18-133 444-559 (786)
91 KOG0977 Nuclear envelope prote 59.7 2.6E+02 0.0056 30.3 17.6 136 16-165 84-219 (546)
92 PRK00409 recombination and DNA 59.0 2.9E+02 0.0063 30.8 15.0 9 184-192 672-680 (782)
93 PRK03918 chromosome segregatio 58.0 2.9E+02 0.0062 30.3 22.4 7 77-83 263-269 (880)
94 PF05911 DUF869: Plant protein 57.6 3.2E+02 0.007 30.8 17.9 42 119-160 670-711 (769)
95 KOG0964 Structural maintenance 57.3 3.8E+02 0.0081 31.4 16.6 131 24-161 230-360 (1200)
96 PF04849 HAP1_N: HAP1 N-termin 57.2 2.2E+02 0.0047 28.7 19.2 139 17-158 160-298 (306)
97 PF11570 E2R135: Coiled-coil r 56.9 1.5E+02 0.0032 26.6 12.3 104 51-174 14-122 (136)
98 PRK15396 murein lipoprotein; P 55.6 71 0.0015 25.9 7.2 40 104-143 28-67 (78)
99 PF12777 MT: Microtubule-bindi 54.8 2.2E+02 0.0047 28.3 12.1 23 69-91 11-33 (344)
100 PF09738 DUF2051: Double stran 53.5 2.4E+02 0.0053 28.1 12.3 92 54-145 79-170 (302)
101 PRK03918 chromosome segregatio 53.2 3.4E+02 0.0074 29.7 20.7 7 82-88 261-267 (880)
102 PF10234 Cluap1: Clusterin-ass 53.0 98 0.0021 30.4 9.1 19 75-93 171-189 (267)
103 PF04728 LPP: Lipoprotein leuc 52.7 82 0.0018 24.2 6.7 37 103-139 12-48 (56)
104 PF03962 Mnd1: Mnd1 family; I 52.6 1.6E+02 0.0035 27.0 10.1 13 110-122 137-149 (188)
105 PF11932 DUF3450: Protein of u 52.4 2.1E+02 0.0045 27.0 12.6 59 38-96 42-100 (251)
106 PF08826 DMPK_coil: DMPK coile 51.7 94 0.002 24.1 7.0 16 105-120 43-58 (61)
107 TIGR01005 eps_transp_fam exopo 51.7 3.5E+02 0.0076 29.4 19.0 42 49-90 292-333 (754)
108 PF12325 TMF_TATA_bd: TATA ele 51.6 1.6E+02 0.0035 25.5 12.6 73 16-92 15-87 (120)
109 PRK04863 mukB cell division pr 51.4 5.2E+02 0.011 31.3 25.9 18 182-199 431-448 (1486)
110 PF04728 LPP: Lipoprotein leuc 51.2 1.1E+02 0.0024 23.5 7.9 45 102-146 4-48 (56)
111 PF15294 Leu_zip: Leucine zipp 51.2 2.6E+02 0.0056 27.8 14.6 121 50-174 130-259 (278)
112 PF07798 DUF1640: Protein of u 49.8 1.9E+02 0.0042 25.9 12.2 19 48-66 76-94 (177)
113 KOG0995 Centromere-associated 49.7 3.8E+02 0.0083 29.3 18.5 139 19-157 240-388 (581)
114 TIGR01069 mutS2 MutS2 family p 48.6 4.2E+02 0.0091 29.6 14.1 9 184-192 660-668 (771)
115 TIGR00634 recN DNA repair prot 48.3 3.6E+02 0.0078 28.5 13.4 122 25-157 252-374 (563)
116 PF00038 Filament: Intermediat 48.2 2.5E+02 0.0055 26.7 25.9 181 38-218 11-206 (312)
117 PF10186 Atg14: UV radiation r 47.8 2.3E+02 0.0051 26.3 17.4 56 103-158 93-148 (302)
118 PF07106 TBPIP: Tat binding pr 47.5 61 0.0013 28.7 6.3 66 24-94 72-137 (169)
119 PRK09973 putative outer membra 47.1 1E+02 0.0022 25.5 7.0 22 112-133 42-63 (85)
120 PF00769 ERM: Ezrin/radixin/mo 46.6 2.7E+02 0.0058 26.6 15.2 115 24-152 12-126 (246)
121 PF10146 zf-C4H2: Zinc finger- 46.6 2.7E+02 0.0059 26.6 13.0 41 102-142 61-101 (230)
122 KOG0243 Kinesin-like protein [ 46.5 5.4E+02 0.012 30.1 15.3 116 24-146 372-514 (1041)
123 PRK15136 multidrug efflux syst 45.8 3.3E+02 0.0071 27.4 12.5 14 24-37 99-112 (390)
124 PF04582 Reo_sigmaC: Reovirus 45.3 50 0.0011 33.3 5.9 122 33-154 30-151 (326)
125 PF05266 DUF724: Protein of un 45.1 2.6E+02 0.0056 26.0 12.0 59 98-156 128-186 (190)
126 PRK11281 hypothetical protein; 45.0 3E+02 0.0064 32.3 12.6 42 182-223 220-269 (1113)
127 PF06818 Fez1: Fez1; InterPro 44.5 2.8E+02 0.0062 26.3 11.4 91 57-147 15-105 (202)
128 PF05478 Prominin: Prominin; 44.1 5E+02 0.011 29.0 14.4 124 17-140 236-382 (806)
129 PF07889 DUF1664: Protein of u 43.8 2.3E+02 0.0049 24.9 11.7 81 42-153 40-120 (126)
130 PRK15396 murein lipoprotein; P 43.0 1.4E+02 0.0031 24.1 7.2 39 102-140 33-71 (78)
131 PF05010 TACC: Transforming ac 42.3 3E+02 0.0066 26.0 17.8 112 51-165 68-179 (207)
132 PF04156 IncA: IncA protein; 41.3 2.6E+02 0.0055 24.8 14.1 41 25-65 82-122 (191)
133 TIGR03185 DNA_S_dndD DNA sulfu 39.6 5.1E+02 0.011 27.9 13.1 105 19-124 400-506 (650)
134 KOG0161 Myosin class II heavy 39.5 8.7E+02 0.019 30.5 29.8 122 42-163 1411-1532(1930)
135 PRK09973 putative outer membra 39.4 1.7E+02 0.0036 24.3 7.1 44 102-145 25-68 (85)
136 PF06008 Laminin_I: Laminin Do 39.3 3.4E+02 0.0074 25.7 16.6 76 18-93 18-93 (264)
137 PF08826 DMPK_coil: DMPK coile 39.0 98 0.0021 24.0 5.4 43 49-91 15-57 (61)
138 cd07647 F-BAR_PSTPIP The F-BAR 38.3 3.4E+02 0.0073 25.4 15.9 116 39-164 54-174 (239)
139 TIGR03545 conserved hypothetic 38.1 2.8E+02 0.0061 29.8 10.5 79 79-174 190-268 (555)
140 PF12777 MT: Microtubule-bindi 37.8 1.8E+02 0.0038 28.9 8.5 76 18-93 229-304 (344)
141 PF05911 DUF869: Plant protein 37.8 6.4E+02 0.014 28.5 15.7 96 107-202 588-686 (769)
142 PF04849 HAP1_N: HAP1 N-termin 37.3 4.5E+02 0.0097 26.5 12.4 89 47-135 215-303 (306)
143 PF05103 DivIVA: DivIVA protei 37.1 18 0.00039 30.1 1.3 16 52-67 39-54 (131)
144 KOG4673 Transcription factor T 36.2 6.9E+02 0.015 28.4 17.4 141 22-165 500-652 (961)
145 PF04111 APG6: Autophagy prote 36.2 4.4E+02 0.0096 26.1 13.5 69 106-174 62-130 (314)
146 PF01576 Myosin_tail_1: Myosin 36.1 12 0.00026 41.8 0.0 72 22-93 354-432 (859)
147 KOG0979 Structural maintenance 35.9 7.8E+02 0.017 28.9 18.6 47 23-69 180-226 (1072)
148 PF05276 SH3BP5: SH3 domain-bi 35.3 4.2E+02 0.0091 25.6 23.8 191 21-236 8-220 (239)
149 PRK10698 phage shock protein P 34.5 4E+02 0.0086 25.1 15.5 122 33-156 19-147 (222)
150 TIGR02231 conserved hypothetic 34.3 5.3E+02 0.012 26.9 11.7 27 133-159 142-168 (525)
151 PRK10476 multidrug resistance 34.0 4.5E+02 0.0098 25.5 15.3 13 25-37 87-99 (346)
152 PF14197 Cep57_CLD_2: Centroso 33.9 2.3E+02 0.005 22.2 9.3 62 72-147 4-65 (69)
153 PF15290 Syntaphilin: Golgi-lo 33.7 5.1E+02 0.011 26.1 10.6 74 72-152 67-140 (305)
154 PF06785 UPF0242: Uncharacteri 33.5 4.1E+02 0.0088 27.5 10.1 125 1-129 94-229 (401)
155 KOG0963 Transcription factor/C 33.2 7.1E+02 0.015 27.6 21.0 182 19-210 198-398 (629)
156 TIGR03545 conserved hypothetic 32.7 5.9E+02 0.013 27.5 11.8 38 51-88 190-227 (555)
157 PF12325 TMF_TATA_bd: TATA ele 32.6 3.3E+02 0.0072 23.6 12.1 96 46-145 17-112 (120)
158 TIGR02449 conserved hypothetic 32.0 2.5E+02 0.0055 22.1 8.5 54 101-154 7-60 (65)
159 COG3524 KpsE Capsule polysacch 31.9 5.8E+02 0.013 26.2 14.5 72 19-90 181-268 (372)
160 PF04156 IncA: IncA protein; 31.7 3.7E+02 0.008 23.8 15.4 39 103-141 132-170 (191)
161 KOG0995 Centromere-associated 31.4 7.3E+02 0.016 27.2 12.6 13 190-202 426-438 (581)
162 PF09730 BicD: Microtubule-ass 30.0 8.3E+02 0.018 27.4 19.6 37 110-146 109-145 (717)
163 KOG0249 LAR-interacting protei 30.0 6.4E+02 0.014 28.7 11.6 50 72-121 134-183 (916)
164 PF09789 DUF2353: Uncharacteri 29.9 6E+02 0.013 25.7 16.5 145 19-165 4-162 (319)
165 PRK15422 septal ring assembly 29.4 2.9E+02 0.0062 22.7 6.8 48 21-68 22-69 (79)
166 PRK14158 heat shock protein Gr 29.4 2.2E+02 0.0048 26.6 7.1 36 5-40 28-63 (194)
167 TIGR01000 bacteriocin_acc bact 29.2 6.3E+02 0.014 25.8 19.2 22 103-124 238-259 (457)
168 KOG2077 JNK/SAPK-associated pr 28.9 7.9E+02 0.017 27.4 11.8 105 25-134 312-418 (832)
169 PF15294 Leu_zip: Leucine zipp 28.6 6E+02 0.013 25.3 13.3 70 21-90 129-207 (278)
170 COG4238 Murein lipoprotein [Ce 28.4 2.3E+02 0.005 23.2 6.1 40 101-140 32-71 (78)
171 PF08776 VASP_tetra: VASP tetr 28.1 1.3E+02 0.0028 21.8 4.1 25 26-56 13-37 (40)
172 PF10234 Cluap1: Clusterin-ass 28.0 6E+02 0.013 25.1 13.1 52 42-93 166-217 (267)
173 TIGR01069 mutS2 MutS2 family p 27.9 8.9E+02 0.019 27.1 13.9 9 321-329 708-716 (771)
174 TIGR02977 phageshock_pspA phag 27.8 4.9E+02 0.011 24.1 18.7 47 33-79 19-65 (219)
175 PRK12472 hypothetical protein; 27.5 8.1E+02 0.017 26.5 11.9 81 51-138 217-299 (508)
176 PRK11281 hypothetical protein; 27.5 1.1E+03 0.023 27.9 22.8 72 24-95 63-143 (1113)
177 TIGR02971 heterocyst_DevB ABC 27.5 5.5E+02 0.012 24.5 17.9 15 25-39 56-70 (327)
178 TIGR01000 bacteriocin_acc bact 27.2 6.9E+02 0.015 25.5 15.0 33 35-67 169-201 (457)
179 PF06120 Phage_HK97_TLTM: Tail 27.1 6.5E+02 0.014 25.2 12.2 92 26-117 69-171 (301)
180 PF08614 ATG16: Autophagy prot 27.0 4.8E+02 0.01 23.7 12.0 38 101-138 137-174 (194)
181 PF10168 Nup88: Nuclear pore c 26.8 9.2E+02 0.02 26.9 15.4 20 48-67 568-587 (717)
182 KOG4403 Cell surface glycoprot 26.5 8.3E+02 0.018 26.3 13.9 67 19-85 254-344 (575)
183 PRK10559 p-hydroxybenzoic acid 26.2 5.5E+02 0.012 24.9 9.6 27 135-161 121-147 (310)
184 COG1566 EmrA Multidrug resista 25.7 7.2E+02 0.016 25.3 13.7 7 116-122 152-158 (352)
185 PRK03598 putative efflux pump 25.7 6.1E+02 0.013 24.4 14.1 16 24-39 81-96 (331)
186 PF15397 DUF4618: Domain of un 25.5 6.5E+02 0.014 24.7 17.9 49 39-87 82-134 (258)
187 PF10191 COG7: Golgi complex c 25.4 9.8E+02 0.021 26.7 15.6 118 35-157 67-188 (766)
188 TIGR02231 conserved hypothetic 24.7 8.1E+02 0.018 25.5 12.3 37 103-139 126-162 (525)
189 KOG0946 ER-Golgi vesicle-tethe 24.6 1.1E+03 0.025 27.2 13.8 125 22-146 648-775 (970)
190 PF04012 PspA_IM30: PspA/IM30 23.9 5.6E+02 0.012 23.3 17.6 43 112-154 95-137 (221)
191 KOG2264 Exostosin EXT1L [Signa 23.8 2.3E+02 0.005 31.3 6.9 49 18-66 87-135 (907)
192 PF05010 TACC: Transforming ac 23.4 6.4E+02 0.014 23.9 21.1 136 26-172 25-168 (207)
193 PF05103 DivIVA: DivIVA protei 23.0 83 0.0018 26.1 2.9 12 53-64 33-44 (131)
194 KOG1962 B-cell receptor-associ 22.8 2.3E+02 0.0051 27.1 6.1 51 17-67 158-208 (216)
195 PRK11020 hypothetical protein; 22.8 2.4E+02 0.0051 24.8 5.6 46 75-122 7-52 (118)
196 cd07672 F-BAR_PSTPIP2 The F-BA 22.7 6.7E+02 0.014 23.8 16.4 117 39-165 55-190 (240)
197 PRK01156 chromosome segregatio 22.4 1.1E+03 0.024 26.2 17.9 6 133-138 692-697 (895)
198 PRK06568 F0F1 ATP synthase sub 22.2 5.8E+02 0.013 22.9 14.0 87 78-169 33-119 (154)
199 TIGR02977 phageshock_pspA phag 22.1 6.3E+02 0.014 23.4 18.6 33 32-64 39-71 (219)
200 KOG4403 Cell surface glycoprot 22.0 7.3E+02 0.016 26.7 9.8 29 297-325 531-561 (575)
201 KOG4302 Microtubule-associated 21.8 6.8E+02 0.015 27.9 10.0 91 48-138 99-190 (660)
202 COG4443 Uncharacterized protei 21.5 75 0.0016 25.4 2.1 16 181-196 52-67 (72)
203 TIGR03017 EpsF chain length de 21.4 8.3E+02 0.018 24.4 19.1 45 47-91 256-300 (444)
204 PF05837 CENP-H: Centromere pr 21.3 4.9E+02 0.011 21.7 11.3 82 73-155 3-84 (106)
205 TIGR03017 EpsF chain length de 21.2 8.4E+02 0.018 24.4 19.1 31 40-70 173-203 (444)
206 TIGR00998 8a0101 efflux pump m 21.0 7.2E+02 0.016 23.6 13.7 44 47-90 75-118 (334)
207 PRK15030 multidrug efflux syst 20.9 7.5E+02 0.016 24.7 9.6 20 137-156 142-161 (397)
208 PF06160 EzrA: Septation ring 20.8 1E+03 0.022 25.3 15.3 118 21-138 376-502 (560)
209 PF11932 DUF3450: Protein of u 20.6 7.1E+02 0.015 23.4 12.8 95 25-119 22-116 (251)
210 cd07658 F-BAR_NOSTRIN The F-BA 20.5 7.2E+02 0.016 23.4 15.5 125 41-165 58-207 (239)
211 PF12329 TMF_DNA_bd: TATA elem 20.5 4.3E+02 0.0093 20.8 7.7 58 26-83 14-71 (74)
212 PRK15422 septal ring assembly 20.3 4.9E+02 0.011 21.4 10.4 53 105-157 22-74 (79)
213 KOG4809 Rab6 GTPase-interactin 20.2 1.2E+03 0.026 25.8 16.0 118 22-139 336-455 (654)
214 TIGR01010 BexC_CtrB_KpsE polys 20.1 8.3E+02 0.018 23.9 16.3 20 73-92 214-233 (362)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=4.1e-42 Score=349.75 Aligned_cols=223 Identities=32% Similarity=0.365 Sum_probs=214.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 15 NTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 15 ~~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
....|.+++.||+++|.+|+++++|+++||..+++|++||+++|.+|..++++++++++.|++|+.+|++++++|+++++
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 35669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 95 EEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 95 ~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
.+.++++.+++|+..|++++.|+++|+.++..++.++.+++.+++++++.+.|++.||+++++|++|+|+|++.|+..|+
T Consensus 359 ~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 359 EEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---cccc-------CCCCceeecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 035694 175 ---ISET-------DGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRR 237 (336)
Q Consensus 175 ---~Se~-------~~~~~VTLS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke~ 237 (336)
.+.. .+|++||||.+|||+|++||++++++|++||++||+||++||+||+++|+||+++.++.
T Consensus 439 ~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~ 511 (522)
T PF05701_consen 439 ALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEI 511 (522)
T ss_pred HhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12689999999999999999999999999999999999999999999999999999995
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.32 E-value=0.00025 Score=73.54 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=107.5
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHH
Q 035694 38 DNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQEL 117 (336)
Q Consensus 38 ~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~Ea 117 (336)
.....++..+.++..||+..+.+|...+.-...--..|.+|..+|.+.+.+|...+..+..+...+..|...|+++..++
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 34455666677778888888888888877777777888888888888888888877777777777777777777777777
Q ss_pred HHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeecHHH
Q 035694 118 EALKLATDEERR-------ARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEE 190 (336)
Q Consensus 118 E~AK~ea~~are-------E~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~~~VTLS~eE 190 (336)
+.++.....++. .+..+..|++.++..+..+...+.-+..|++.++++
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~------------------------- 408 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAA------------------------- 408 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 665554443333 333333333333333333333333333333333322
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694 191 YHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR 236 (336)
Q Consensus 191 Y~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke 236 (336)
=.-++.|+-+++-.+++||+||..+|..+..+...
T Consensus 409 -----------i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~ 443 (522)
T PF05701_consen 409 -----------IKTAEERLEAALKEAEAAKASEALALAEIKALSES 443 (522)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 23356788889999999999999999999987654
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.09 E-value=0.5 Score=51.57 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhC
Q 035694 316 RTSIFHQIKDFIVRSITRLFG 336 (336)
Q Consensus 316 ~~s~~~~~~~~~~~~~~~~~~ 336 (336)
+..-|-.|+.-|...+..|||
T Consensus 1030 ~~~~F~~v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168 1030 ARERFKDTFDQVNENFQRVFP 1050 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888885
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.60 E-value=1.5 Score=47.91 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~e 60 (336)
....+++.....++........+......+..++......
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 713 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333333333333
No 5
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.77 E-value=2.8 Score=44.69 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=142.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 17 SDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
+-+.+++.-|+++-....++..++..||.-++.|+.-+++--..+...+++...-...+++|++++.-++..+..+.+..
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44778888888888888888888888888888888888888888888888888889999999999999999999999988
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 035694 97 VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR----QKLRTSQLALRATR--IESEACRASAAEAL 170 (336)
Q Consensus 97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK----a~i~taE~RL~Aa~--kE~EAAkASea~Al 170 (336)
..-+.-..-|+..|+.+..++++.-..--..+..+..|.+++.-.+ ..|.......+--. .==+-++.==+.||
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai 251 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAI 251 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 8888888899999999999999998888888899999999888776 33333322222211 11122222245667
Q ss_pred HHhhc-cccCCCCceeecHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035694 171 RCIGI-SETDGAITVQMTQEEYHAL-KRRAEEEASLAEWRVSVSMEQREGVEA 221 (336)
Q Consensus 171 ~~Lk~-Se~~~~~~VTLS~eEY~~L-s~rA~EaEelA~kRVaaA~aqVeaAKa 221 (336)
+.|.. ++ +.+.....+++.. ..++++....++.-........++.+.
T Consensus 252 ~eiRaqye----~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~ 300 (546)
T KOG0977|consen 252 REIRAQYE----AISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR 300 (546)
T ss_pred HHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 77763 32 2233444444432 345555555444444444444444443
No 6
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.11 E-value=3 Score=39.17 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=103.2
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 035694 40 AMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA 119 (336)
Q Consensus 40 ~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~ 119 (336)
+.....-.+-...-|..+...|..+..|...+...|..|+.+|..+...|..+...+.++-.....+...|..|..-...
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555677788888899999999999999999999999999999999988888888888889999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 120 LKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 120 AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
+-.-++.+...+..|...+..-...|.....+...+..|++.
T Consensus 188 aE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 188 AENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888888864
No 7
>PRK11637 AmiB activator; Provisional
Probab=94.99 E-value=4.6 Score=40.82 Aligned_cols=75 Identities=11% Similarity=0.247 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
+..+|++.+..|.....+...+..-...+..+|..+...|..+..+.......+..++.+|..+..+|...+..-
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555555555554444443
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.97 E-value=7.3 Score=43.00 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.3
Q ss_pred HhhhhC
Q 035694 331 ITRLFG 336 (336)
Q Consensus 331 ~~~~~~ 336 (336)
|.-+||
T Consensus 616 ~~~~lg 621 (1164)
T TIGR02169 616 FKYVFG 621 (1164)
T ss_pred HHHHCC
Confidence 333443
No 9
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.73 E-value=4.2 Score=39.10 Aligned_cols=11 Identities=0% Similarity=0.274 Sum_probs=5.8
Q ss_pred eeecHHHHHHH
Q 035694 184 VQMTQEEYHAL 194 (336)
Q Consensus 184 VTLS~eEY~~L 194 (336)
|-||...|.-.
T Consensus 205 m~l~~~~~~~V 215 (239)
T COG1579 205 MKLPSQTLSKV 215 (239)
T ss_pred eeecHHHHHHH
Confidence 55555555443
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.45 E-value=6.2 Score=42.11 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=28.3
Q ss_pred eeecHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694 184 VQMTQEEYHALKRRAEEEASL-AEWRVSVSMEQREGVEASRDFALSRLQETRLR 236 (336)
Q Consensus 184 VTLS~eEY~~Ls~rA~EaEel-A~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke 236 (336)
+-...++-..|+...+.+++- -+.|-..-..+++..+..... .--|.++.++
T Consensus 366 ~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~re 418 (546)
T PF07888_consen 366 AEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-RVQLSENRRE 418 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence 445566777787777665543 344444445566665554433 1245555554
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.27 E-value=13 Score=42.66 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE 95 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~ 95 (336)
.+..+..++..+...+..++.....+......++.++.....++..+..+....+-.+..|..++.....++..+...
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1163)
T COG1196 689 ELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777777777777777777666666666666666666665555555554444444444333
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.18 E-value=5.6 Score=38.27 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035694 109 ALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCI 173 (336)
Q Consensus 109 ~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~L 173 (336)
.+..|..|...|+........++..+..+.+.-...+.....++..-...+-+++++--.++..|
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i 154 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555666666666666666666543444443
No 13
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=94.04 E-value=5.1 Score=37.20 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=105.6
Q ss_pred HHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035694 54 LERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSN 133 (336)
Q Consensus 54 LekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~k 133 (336)
|.--+.-+..|.+....+...|......|..+..-+.++...-..++.-+..|...|+.+..-+..+...+.-++.++..
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888999999999999999999999988888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 134 LKQVLRLKRQKLRTSQLALRATRIESEACRASAAEA 169 (336)
Q Consensus 134 lkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~A 169 (336)
-.+-++.++.-+..+...|..++.+.+..+.++-.|
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985444
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.93 E-value=5.6 Score=37.31 Aligned_cols=146 Identities=17% Similarity=0.211 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhh
Q 035694 20 EAKTAELVKTKAELKRAKDN-------AMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSK 92 (336)
Q Consensus 20 ~s~~~ELeeaK~~Lekak~E-------~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~ 92 (336)
..++.+|+.+...+..+... ...+-.-+.+|..-|.-+-..|....++...+...+..++..++.....+..+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444444333 33344444444444444445555555555555555555555555555555555
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 93 KEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 93 ~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
.......-+.+..|-..|..+..-++.+-.....+...+..+..+++.+..-+..++.++...-.++..+...
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 5555555567777777788887777777777777777777888888888888888888877777777666443
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.90 E-value=3 Score=46.11 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh---------------HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKP---------------LIDELERLKATLASDKNRCSMSNMIVSELQAELD 83 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaes---------------Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ 83 (336)
|.-+..|.+-.+.+|+..-..+...+.+.+. ..++|...+..+-.++..-...-..|..|+.+|
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL- 83 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL- 83 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 3344455555555555555555555555444 222333333333333333345556666777777
Q ss_pred hhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 84 STTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACR 163 (336)
Q Consensus 84 ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAk 163 (336)
++..++.-.+..-..+......++. |+.+...+..+..+ ...+..|++..+..+..++.++.....+.+++-
T Consensus 84 r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E-------~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~ 155 (775)
T PF10174_consen 84 RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAE-------RERLQRELERLRKTLEELQLRIETQQQTLDKAD 155 (775)
T ss_pred HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544443333333333333 44444444444443 334444455555555556666666666666655
Q ss_pred HHHHHHHHHhh
Q 035694 164 ASAAEALRCIG 174 (336)
Q Consensus 164 ASea~Al~~Lk 174 (336)
.+--.-...|+
T Consensus 156 eei~kL~e~L~ 166 (775)
T PF10174_consen 156 EEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHh
Confidence 55444444443
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.85 E-value=15 Score=42.04 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~ 93 (336)
+.....+|......+.....+...+......+...+...+..+..++-........+..+..++......+..+.
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 743 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE 743 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666666666655555555555555555555544444433
No 17
>PRK11637 AmiB activator; Provisional
Probab=93.45 E-value=9.7 Score=38.52 Aligned_cols=79 Identities=10% Similarity=0.181 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 16 TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 16 ~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
..-+..+..++++....|..+..+...+-.-...|..+|......+..+..........|..|+.+|...+.+|...+.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777777777777777777777777777777777777777777666655443
No 18
>PRK09039 hypothetical protein; Validated
Probab=93.34 E-value=6.1 Score=39.40 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 106 LSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 106 L~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~ 153 (336)
+...+.++..++...+.....++-.+..|+++++.-+..+..++..|.
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333333
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.05 E-value=21 Score=39.20 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH---------
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS--------- 88 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e--------- 88 (336)
.......|++..|.+|...+.-...||.-+.+|-+-=-..|.+|..+|+....-...+.+|....++-++-
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899998888888777777544433222333333333333333333334444433333332
Q ss_pred --------HhhhHHHHHHhhHhHHHHHH-H----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 89 --------IMSKKEEEVNATMMIKELSQ-A----LAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRAT 155 (336)
Q Consensus 89 --------Le~~~~~E~kar~~~~eL~~-~----Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa 155 (336)
|+.--..|.+++-...+-.. . ...-..-+|..|.....+..|+.+|+.|+-+..-.+.++|..++..
T Consensus 499 eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222211111000 0 0000022344455555555666666666666666666666666544
Q ss_pred HHH-HHHHHHH--HHHHHHHhh
Q 035694 156 RIE-SEACRAS--AAEALRCIG 174 (336)
Q Consensus 156 ~kE-~EAAkAS--ea~Al~~Lk 174 (336)
++- -|--+-. =..||.+|+
T Consensus 579 r~~~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 579 RKYEKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH
Confidence 442 2211222 245566666
No 20
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.99 E-value=7.4 Score=33.47 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~ 153 (336)
...|..+..++..++......+.++..++..+...+.....-+..|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455555555555555444444444444444444444444343333
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.46 E-value=33 Score=39.90 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhh------hhHHHHHHHHHHHHHhHHhhccch--hhhhhhHHHHHHhhHHHHh
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDS------KPLIDELERLKATLASDKNRCSMS--NMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aa------esLr~ELekeK~eLa~lKere~~a--sa~V~sLe~eL~ktk~eLe 90 (336)
+..+..+|++....|.+.+.+...+.... .-+..++...+..+..+....... +.++..|+.++.....+|.
T Consensus 760 l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~ 839 (1311)
T TIGR00606 760 IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD 839 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554442222 223777777777777765544432 3456778888877777777
Q ss_pred hh
Q 035694 91 SK 92 (336)
Q Consensus 91 ~~ 92 (336)
.+
T Consensus 840 ~l 841 (1311)
T TIGR00606 840 TV 841 (1311)
T ss_pred HH
Confidence 76
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.93 E-value=25 Score=37.66 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS 69 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~ 69 (336)
+..+.+|.++..........+..+++.-++.|..+|...+.+...|++...
T Consensus 145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555666666666666666666666666666665554433
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.84 E-value=26 Score=41.03 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHh--------hccchhhhhhhHHHHHHhhHHHHh
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN--------RCSMSNMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKe--------re~~asa~V~sLe~eL~ktk~eLe 90 (336)
-.++..=|+.++...+++-....-++..+..+++=|....+..+.+++ -...+.-.|..|-.+|+..-..|.
T Consensus 1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~ 1528 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP 1528 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 344555566666666666666666666666666655555555444433 122233445555555544444433
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 91 SKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARS--------------NLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 91 ~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~--------------klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
-|-+-=.+.+.++.. -..|.++++.|++.|+..+..+. ++..-|+++-..+.-++..|--+.
T Consensus 1529 nVd~IL~~T~~di~r----a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~ 1604 (1758)
T KOG0994|consen 1529 NVDAILSRTKGDIAR----AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQ 1604 (1758)
T ss_pred cHHHHHHhhhhhHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 332222222222111 11223333333333333322222 223334444455555566666666
Q ss_pred HHHHHHHHHHHHHH
Q 035694 157 IESEACRASAAEAL 170 (336)
Q Consensus 157 kE~EAAkASea~Al 170 (336)
.+..+|...+..|-
T Consensus 1605 ~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1605 EETAAAEKLATSAT 1618 (1758)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655544443
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.93 E-value=27 Score=36.35 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
..|++...+|......+...|--...|..+|...+.+++.+......+...+..++..|......|..+...+.+.+...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888888888888888888888888888888888888889888888888888888887777888
Q ss_pred HHHHHHHHHH-----------HHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAET-----------RQE---LEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRA 164 (336)
Q Consensus 104 ~eL~~~Lqql-----------~~E---aE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkA 164 (336)
..+-.++++. ..+ ..+...--..+-.+.......+.++...+......+.+-..++.....
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~ 192 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888774 122 233333334445555566666666666666666666666666654443
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.74 E-value=17 Score=35.81 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHH
Q 035694 46 DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATD 125 (336)
Q Consensus 46 aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~ 125 (336)
.-..|...++.++.....|..........++.|.........++...+..... .-..=+..|..+..++........
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666676666666666666655544321 111123344455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 126 EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEAC 162 (336)
Q Consensus 126 ~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAA 162 (336)
..+.++..++.+...-...+..........+.+|..+
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544544444444444444433
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.73 E-value=22 Score=35.00 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS 69 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~ 69 (336)
.+...++.++............+......|+.....+..++..|++...
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555566666666666666666666666666666665543
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.13 E-value=49 Score=38.20 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHH-hhhHHHH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSI-MSKKEEE 96 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eL-e~~~~~E 96 (336)
.+.++.+.+.+.+.+.+-...|...++.++.-++.+...++.+.......-...-..+--|+-.+...+..+ ..+...-
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~ 396 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL 396 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 345555666666666666666666666666666666666665555443332222222222222222222222 2222222
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 035694 97 VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS----------- 165 (336)
Q Consensus 97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS----------- 165 (336)
.+.......|...+..+......++.+-+.-++++..-..+....+-.+.+..-+++--..++...+..
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~ 476 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPN 476 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchh
Confidence 233334444444444444444444444444444555555555556666666677777777777776666
Q ss_pred HHHHHHHhhcc------ccCC--CCceeecHHHHHHHHHH
Q 035694 166 AAEALRCIGIS------ETDG--AITVQMTQEEYHALKRR 197 (336)
Q Consensus 166 ea~Al~~Lk~S------e~~~--~~~VTLS~eEY~~Ls~r 197 (336)
-...|.+|... .+-+ |..|||.-..|.....+
T Consensus 477 m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~ 516 (1074)
T KOG0250|consen 477 MPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIER 516 (1074)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHH
Confidence 22334555411 1111 46799988888765443
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.04 E-value=52 Score=38.42 Aligned_cols=106 Identities=21% Similarity=0.175 Sum_probs=68.6
Q ss_pred hhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035694 71 SNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETR-------QELEALKLATDEERRARSNLKQVLRLKRQ 143 (336)
Q Consensus 71 asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~-------~EaE~AK~ea~~areE~~klkeEaEqaKa 143 (336)
-...+....++++-+.++|..+...+........++...|+... .++...+......+.|+..+..++...+.
T Consensus 491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK 570 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Confidence 34444555566666666666666666666666666666666644 44455555555566666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhcc
Q 035694 144 KLRTSQLALRATRIESEACRAS---------AAEALRCIGIS 176 (336)
Q Consensus 144 ~i~taE~RL~Aa~kE~EAAkAS---------ea~Al~~Lk~S 176 (336)
....+...|......++.++.+ ...||-.++.+
T Consensus 571 e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 571 EERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 7777777777888888888886 44555555543
No 29
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.62 E-value=21 Score=36.16 Aligned_cols=124 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH----HHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHH
Q 035694 30 KAELKRAKDNAMQSWLDSKPLIDELERLKAT----LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKE 105 (336)
Q Consensus 30 K~~Lekak~E~~~lr~aaesLr~ELekeK~e----La~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~e 105 (336)
+.-|+.++.-...+.......+..|.++-.+ |+.+..||..-......|=.+....+.+|..++.+-..+...+.+
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~ 298 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE 298 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555555555556666665554 445567778888888888888888888898888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 106 LSQALAETRQELEALKLATDEERR------ARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 106 L~~~Lqql~~EaE~AK~ea~~are------E~~klkeEaEqaKa~i~taE~RL~ 153 (336)
++..|.+++.+.++.|.+.+.--. =+.++|+-+-.-|..|.+|.+|+-
T Consensus 299 ~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 299 RTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999998887764311 234555666666666666666653
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.53 E-value=32 Score=35.34 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694 32 ELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE 95 (336)
Q Consensus 32 ~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~ 95 (336)
+++..+.+...+......|..++.+++.++..++..-..-...+..|+.++......+......
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666667777777777777776554444445555666666666665554433
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=87.38 E-value=49 Score=36.21 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 126 EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEAC 162 (336)
Q Consensus 126 ~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAA 162 (336)
..+.++..+..++......+.+.+..|.....+++..
T Consensus 360 ~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555444444433
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=50 Score=37.27 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH-------HhhhHHH
Q 035694 23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS-------IMSKKEE 95 (336)
Q Consensus 23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e-------Le~~~~~ 95 (336)
.--|-+++..|..++.++..+...-+..++|+..+++.|-.++++.......-+-|+.+|....+. +..+.++
T Consensus 457 s~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa 536 (1118)
T KOG1029|consen 457 SGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAA 536 (1118)
T ss_pred hhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHH
Confidence 344556777777888888888888888899999999999999999998888888899988776553 2222222
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 035694 96 EVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI-ESEACRASAAEALRCIG 174 (336)
Q Consensus 96 E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k-E~EAAkASea~Al~~Lk 174 (336)
-.+...+..-|...|+.++.| .+.-.++..-..-.+..-|..+.+..+.++-..+ +-+--+..+..++..++
T Consensus 537 ~~~ke~irq~ikdqldelskE-------~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 537 RRKKELIRQAIKDQLDELSKE-------TESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333344444444444 4444445555555555555666777777777666 77777888888888887
No 33
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.70 E-value=19 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHhhccchhhhhhhHHHHHHh
Q 035694 52 DELERLKATLASDKNRCSMSNMIVSELQAELDS 84 (336)
Q Consensus 52 ~ELekeK~eLa~lKere~~asa~V~sLe~eL~k 84 (336)
.++..+..++..++.........+..+..+|..
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLES 35 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444444444444443
No 34
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.43 E-value=34 Score=33.37 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=17.7
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhh
Q 035694 313 KKRRTSIFHQIKDFIVRSITRLF 335 (336)
Q Consensus 313 ~~~~~s~~~~~~~~~~~~~~~~~ 335 (336)
.-.+.+|++-|++=|++.+.+-|
T Consensus 398 ~~~~~~~~~~~l~~~~~~~~~~~ 420 (423)
T TIGR01843 398 KTGERTVIEYLLKPITDSVQEAL 420 (423)
T ss_pred EeCCccHHHHHHHHHHHHHHHHh
Confidence 34667888888888888887776
No 35
>PRK09039 hypothetical protein; Validated
Probab=86.42 E-value=38 Score=33.88 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRAT 155 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa 155 (336)
...+....++.|.++++.+|.-......++..+++.....+..|..++.+|..+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555444444444444444444444444444444444
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.34 E-value=49 Score=36.94 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHh
Q 035694 23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMM 102 (336)
Q Consensus 23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~ 102 (336)
..+|.-.+..+.....+...+...+.-|..|| +-..++.+|.+....+..-..+|.. |+.+...+..++..-.+....
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E 129 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE 129 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777888888888 8888888888887777777777777 888887777777666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVL 138 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEa 138 (336)
+..|..+|..+...++..+..-....+++.++...+
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777754
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=85.84 E-value=59 Score=35.62 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHHHH
Q 035694 187 TQEEYHALKRRAEEE 201 (336)
Q Consensus 187 S~eEY~~Ls~rA~Ea 201 (336)
..+.|..|...+.+.
T Consensus 535 ~~~~~~~l~~e~~~l 549 (880)
T PRK02224 535 KRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 38
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.84 E-value=7 Score=39.50 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=70.8
Q ss_pred HHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHh------HH
Q 035694 31 AELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMM------IK 104 (336)
Q Consensus 31 ~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~------~~ 104 (336)
..|+++..-...|-.-.++|..+.-..+..|+.++++-..++..|..+..+|.....+|+.++..=.+.... +.
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv 331 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 355677777788999999999999999999999999999999999999999999999999877543333222 23
Q ss_pred HHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEA 119 (336)
Q Consensus 105 eL~~~Lqql~~EaE~ 119 (336)
.|..+|.+|..|.-+
T Consensus 332 ~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666766666554
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.67 E-value=60 Score=37.45 Aligned_cols=211 Identities=13% Similarity=0.079 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEV 97 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~ 97 (336)
-|.-+++||+.++..++..+.+...-....+.|..|.+.+..++...++....-...+.+|..++......+..+...-.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 35667777777777777777676667777777777777777777777776666666666666666666665555544444
Q ss_pred HhhHhHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 98 NATMMIKELSQ-------ALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEAL 170 (336)
Q Consensus 98 kar~~~~eL~~-------~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al 170 (336)
++...+.++.. .|..+..+-+....+......+..++.-++..-...-..+..++...+++.+=-- .-
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~-----~e 942 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG-----DE 942 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh-----HH
Confidence 44443333333 3333333334444444444444444444433333322222222222222221100 00
Q ss_pred HHhh---ccccCC-CCceeecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694 171 RCIG---ISETDG-AITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR 236 (336)
Q Consensus 171 ~~Lk---~Se~~~-~~~VTLS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke 236 (336)
..+= +..-+- +..+---.++...|.-+-..-+.-.+++| |.-++-+..-++..-.+.+-+.+.
T Consensus 943 k~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~---m~mle~~E~~~~~lk~k~~~Ie~D 1009 (1174)
T KOG0933|consen 943 KRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKN---MDMLERAEEKEAALKTKKEIIEKD 1009 (1174)
T ss_pred HHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0100 000000 22334456777777777777777777765 445555555555555555555544
No 40
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.58 E-value=75 Score=37.51 Aligned_cols=50 Identities=6% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
..+|+++...+..+.......++++.-+..-+-.+-..+..++.+++...
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555443
No 41
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.47 E-value=21 Score=40.67 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 035694 52 DELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRAR 131 (336)
Q Consensus 52 ~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~ 131 (336)
.||++.+..+..+.+=-+.--..+.+|+-+|.+++.+..-+++...+-..-|.| ..+-.|-+-...+.+.+.+
T Consensus 255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad-------~ad~iEmaTldKEmAEERa 327 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD-------TADAIEMATLDKEMAEERA 327 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Confidence 589999999999999888888889999999999998877666665444444444 4555566666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHhhc---------------cccCCCCceeecH----
Q 035694 132 SNLKQVLRLKRQKLRTSQLALRATRIESEACRAS--AAEA--LRCIGI---------------SETDGAITVQMTQ---- 188 (336)
Q Consensus 132 ~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS--ea~A--l~~Lk~---------------Se~~~~~~VTLS~---- 188 (336)
.-|..|++..+-.+..++.-|.-...|++--.-. ...+ +.+|.. +.+...+.+-+..
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 7888888888888889999998888888753222 1111 122210 1000011222211
Q ss_pred --HHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHhhHH
Q 035694 189 --EEYHAL---KRRAEEEASLAEWRVSVSMEQREGVEASRD 224 (336)
Q Consensus 189 --eEY~~L---s~rA~EaEelA~kRVaaA~aqVeaAKaSE~ 224 (336)
.|..+| ..+...--+.++..|+.-..||+||=-.|-
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~ 448 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEE 448 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 122222 223334445677889999999999876653
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.09 E-value=62 Score=34.33 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH-------HhhhhhhHHHHHHHHHHHHHhHHhhccc---hhhhhhhHHHHHHhhHH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQ-------SWLDSKPLIDELERLKATLASDKNRCSM---SNMIVSELQAELDSTTK 87 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~-------lr~aaesLr~ELekeK~eLa~lKere~~---asa~V~sLe~eL~ktk~ 87 (336)
.+..+...++.+=..|++-...-.. +.....-++..+..+..++..+++.=.. --..+..|+.+|.....
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence 3444455555544444433332222 3333344444444555555555554111 12347778888888888
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 035694 88 SIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS-- 165 (336)
Q Consensus 88 eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS-- 165 (336)
.+......=.......+++...++.+....+.....-....+.+..++.+-..++..+......|....+.++-..-.
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgi 442 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGL 442 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 877655554555556888888888888888888888888888888888888888888888888888777766655322
Q ss_pred ----------HHHHHHHhhccccCCCCceee-cHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035694 166 ----------AAEALRCIGISETDGAITVQM-TQE-EYHALKRRAEEEASLAEWRVSVSMEQREGVE 220 (336)
Q Consensus 166 ----------ea~Al~~Lk~Se~~~~~~VTL-S~e-EY~~Ls~rA~EaEelA~kRVaaA~aqVeaAK 220 (336)
...-+..|...-.. +.|-| ..+ +|.....+...-....+-=|.+|..--....
T Consensus 443 p~~y~~~~~~~~~~i~~l~~~L~~--g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 443 PEDYLEMFFEVSDEIEALAEELEE--KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444421111 44655 344 7888888888877777665555544333333
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.53 E-value=79 Score=37.84 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLA 62 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa 62 (336)
...+...|+.+..+|.++.+....+-.-..+|..+++..+.-+.
T Consensus 295 k~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 295 LYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666655544433
No 44
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.15 E-value=51 Score=32.72 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh----HhHHHHHHHHHHHHHHHHHHHHh
Q 035694 48 KPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT----MMIKELSQALAETRQELEALKLA 123 (336)
Q Consensus 48 esLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar----~~~~eL~~~Lqql~~EaE~AK~e 123 (336)
..|-..++.++.+...|...+...+..++.|....+..+.++..++.....-. +.+..+...|.....+.+..+..
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~ 226 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKK 226 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555444432211 12223333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 124 TDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 124 a~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
...-+.++..+...++.........+..+..+.+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444
No 45
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=82.87 E-value=56 Score=34.12 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHhh----------------hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHH
Q 035694 17 SDLEAKTAELVKTKAELKRAKDNAMQSWL----------------DSKPLIDELERLKATLASDKNRCSMSNMIVSELQA 80 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~----------------aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~ 80 (336)
..+.-+..||+.+...+..++..+..|++ .+..|..+|...+.+|+.|+.-..-.+-.|..|..
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 34667888899999999888888887774 45667788888888888887767777788888888
Q ss_pred HHHhhHHHHhh
Q 035694 81 ELDSTTKSIMS 91 (336)
Q Consensus 81 eL~ktk~eLe~ 91 (336)
++......|..
T Consensus 322 rI~aLe~QIa~ 332 (434)
T PRK15178 322 KIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHH
Confidence 87777666654
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.78 E-value=80 Score=36.54 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhh---ccchhhhhhhHHHHHHhhHHHHhhhHHHHHH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNR---CSMSNMIVSELQAELDSTTKSIMSKKEEEVN 98 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKer---e~~asa~V~sLe~eL~ktk~eLe~~~~~E~k 98 (336)
...++.+++.+|+........+..-..++...+-+-..++..|+.- ..+....+..|..++.....+|+.....-.+
T Consensus 680 l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~ 759 (1074)
T KOG0250|consen 680 LENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEK 759 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666652 3334445555555555555555544433333
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHH
Q 035694 99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTS-------QLALR---ATRIESEACRASAAE 168 (336)
Q Consensus 99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ta-------E~RL~---Aa~kE~EAAkASea~ 168 (336)
.++.+..+....+++...-+.-+....-....+..+..|+-.+-..+... |..+. -.++.+|+=+.-
T Consensus 760 l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~--- 836 (1074)
T KOG0250|consen 760 LKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVN--- 836 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHh---
Confidence 33333333333333333333333333333333333333333222222220 00111 011111111110
Q ss_pred HHHH-hhccc-cCC---C-Cceee---------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 035694 169 ALRC-IGISE-TDG---A-ITVQM---------TQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDF 225 (336)
Q Consensus 169 Al~~-Lk~Se-~~~---~-~~VTL---------S~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e 225 (336)
+.. +..+. .+. | .+|-| =.+|-..|.+..+.+++.-+-...-.-+-.++.+.-..+
T Consensus 837 -~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~ 907 (1074)
T KOG0250|consen 837 -LEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKE 907 (1074)
T ss_pred -hhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhh
Confidence 000 00000 010 1 11222 246778888899999888888777777766666655544
No 47
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.66 E-value=96 Score=36.20 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.1
Q ss_pred HHHHhh
Q 035694 80 AELDST 85 (336)
Q Consensus 80 ~eL~kt 85 (336)
.+|...
T Consensus 888 ~~L~el 893 (1311)
T TIGR00606 888 EQLVEL 893 (1311)
T ss_pred HHHHHH
Confidence 333333
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.43 E-value=66 Score=37.17 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT 100 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar 100 (336)
.-..+|.++.++|..++..+-....-.+.=.+|.+.+.-++..+..-..+......+++..+..-.+++....++
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k----- 858 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK----- 858 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345678889999998888888888888888899999999999998888777777777777777777776654433
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
+........++..++..-+..-..---++..+-...+.........++.++---.|+.-..-.
T Consensus 859 --v~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e 921 (1174)
T KOG0933|consen 859 --VDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESE 921 (1174)
T ss_pred --HHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhh
Confidence 222333333444444444443333333444445555555555555555555444444443333
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.25 E-value=1.1e+02 Score=35.66 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH-HH
Q 035694 20 EAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE-VN 98 (336)
Q Consensus 20 ~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E-~k 98 (336)
..++.+|..+..-|..+......+-.........+...+.++..+......+...+..|..+....+.++....... ..
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777776666666666677777777777777777777777777777777777777666554443 23
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035694 99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCI 173 (336)
Q Consensus 99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~L 173 (336)
.......+...|.++..+.+.....-.....+... +-...-..........+.+...++.+.+.....=++.|
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~--e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEELLEELKEQLKELRN--ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666665555544333322221 11112222333344444444455555444433333333
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.06 E-value=62 Score=37.31 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035694 50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERR 129 (336)
Q Consensus 50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~are 129 (336)
+|+||++.+..+...++.+..----+..|+.+|..--.+|..+-.-=...+..|+++-..+-.+.++.+++-..-.....
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776655556666665555554444443333345556666666666667777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 130 ARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 130 E~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
|=.+++..++..+..+..++-.|.++.
T Consensus 475 EE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667788888888888888887777654
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.72 E-value=1.2e+02 Score=35.78 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHH
Q 035694 25 ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIK 104 (336)
Q Consensus 25 ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~ 104 (336)
.....+..+...-.+-...+-....+...+.+...++...+..............-++..+..+|..+.......+....
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444455555555555555555555555555554445555555555555555544444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLAL 152 (336)
Q Consensus 105 eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL 152 (336)
++ +..+.++++..+.+...-+.++..+....-.++..++.+|..|
T Consensus 465 e~---~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 465 EI---LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred HH---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2233333444444444444444433333333333333333333
No 52
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.51 E-value=94 Score=34.57 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=43.8
Q ss_pred hhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035694 66 NRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKL 145 (336)
Q Consensus 66 ere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i 145 (336)
.+...+...|..|..+|...+.++...+... ......+...++.+...+..........++.+..+..++..+...+
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERY---KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555444422 2222333344444444444444444444445555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 035694 146 RTSQLALRATRIESE 160 (336)
Q Consensus 146 ~taE~RL~Aa~kE~E 160 (336)
...+..|.+|+-|+-
T Consensus 436 ~E~q~~LnsAQDELv 450 (717)
T PF09730_consen 436 GESQGSLNSAQDELV 450 (717)
T ss_pred HhHHHHHHHHHHHHH
Confidence 555555555554443
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.01 E-value=53 Score=31.37 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKA 59 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~ 59 (336)
+..+|...+..|+.++-.-..|..-+.+|..||.-.+.
T Consensus 101 le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 101 LEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444455555555555555444
No 54
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.86 E-value=1.5e+02 Score=36.58 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHH
Q 035694 20 EAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSI 89 (336)
Q Consensus 20 ~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eL 89 (336)
+.-+.-.++.-.+|+-+..+...+...+-.|...|+.++..++.++.........+..|...+.-....+
T Consensus 1445 ~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444455555555555555555555555554444455555544444444333
No 55
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.70 E-value=52 Score=31.13 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT 100 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar 100 (336)
-.+--|.++-.+|..=-.|+.+|+...-.++..|..--..+..++.....-+..+.-.+.+|.+.+.+.+....+-..-.
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 34578889999999888999999999999999998888888888887777777777888888888877766665543333
Q ss_pred HhHHHHHHHHHH
Q 035694 101 MMIKELSQALAE 112 (336)
Q Consensus 101 ~~~~eL~~~Lqq 112 (336)
..+.+|...+..
T Consensus 94 ~El~~Lr~~l~~ 105 (202)
T PF06818_consen 94 AELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 56
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.67 E-value=41 Score=29.95 Aligned_cols=56 Identities=20% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhH
Q 035694 31 AELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTT 86 (336)
Q Consensus 31 ~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk 86 (336)
..|.+++.+...|.-=+.+|-.||+....++..+----..+-..|..|+.+|.-.+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666655555555543333333344444444444433
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.26 E-value=85 Score=33.30 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHHHH-----HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhh
Q 035694 17 SDLEAKTAELVKTKAE-----LKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~-----Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~ 91 (336)
.-+..++..|..+... |+.+.+....+-.-.+.|-+-|+++.................+..+...+..+..+|+.
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666664433 44677777777777778888888887777777777777777777777777777777777
Q ss_pred hHHH----HHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 92 KKEE----EVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAA 167 (336)
Q Consensus 92 ~~~~----E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea 167 (336)
+... +.. -.....+...|..+....+........-......+..+.+.-...+...+.........+...+..+.
T Consensus 336 l~~sY~l~~~e-~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~ 414 (569)
T PRK04778 336 VKQSYTLNESE-LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL 414 (569)
T ss_pred HHHccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 211 12233334444444444444333333333334445555555555555555555555555555555555
Q ss_pred HHHHHhh
Q 035694 168 EALRCIG 174 (336)
Q Consensus 168 ~Al~~Lk 174 (336)
.|-..|+
T Consensus 415 eAr~kL~ 421 (569)
T PRK04778 415 EAREKLE 421 (569)
T ss_pred HHHHHHH
Confidence 5544443
No 58
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.17 E-value=1.3e+02 Score=35.47 Aligned_cols=68 Identities=26% Similarity=0.312 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
...|.++.+.++++...+......++......++.+..+..++.++..+.++++.+......+.....
T Consensus 332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~ 399 (1353)
T TIGR02680 332 AEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAG 399 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35555666666666666666666666667777777777777777777777776655554444444444
No 59
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.47 E-value=45 Score=29.69 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=33.2
Q ss_pred hhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 75 VSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLA 151 (336)
Q Consensus 75 V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~R 151 (336)
|-+|+.+|.-+....+.+.-.-..++.-+..|...|..++.+..++..+....+++...+-.+...-+..|..++..
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333334444444444444444444444444444444444444444444444444433
No 60
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.24 E-value=65 Score=31.39 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 035694 24 AELVKTKAELKRAKD 38 (336)
Q Consensus 24 ~ELeeaK~~Lekak~ 38 (336)
.+|..+..++.+...
T Consensus 81 ~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 81 ADAAELESQVLRLEA 95 (423)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444433
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.96 E-value=45 Score=29.38 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHH
Q 035694 30 KAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQA 109 (336)
Q Consensus 30 K~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~ 109 (336)
|.+.+.+.+-+-.+..-+.-|-.++...-.++..|..+.......|..|+..|..++..++..- +.......|.+.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~----~~~~~~E~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE----KRKSNAEQLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhHHHHHhh
Confidence 3344444444444444555556666666666677766665555555555555555555544321 222334468888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 110 LAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLAL 152 (336)
Q Consensus 110 Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL 152 (336)
|+.|-.+++.+-.....+...++.+-..++...-.+..++.+.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 8888888888887777777777766666666555555544433
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.73 E-value=1.5e+02 Score=35.13 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 035694 72 NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALK 121 (336)
Q Consensus 72 sa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK 121 (336)
-..+..+..++.....+++.++....+.......+...++.+..+.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555555554444444555555555555555554443
No 63
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=78.43 E-value=58 Score=30.31 Aligned_cols=85 Identities=24% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHH
Q 035694 37 KDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQE 116 (336)
Q Consensus 37 k~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~E 116 (336)
...+.....++......+..++..|...+.........+..-..+|.--+.=|+ .++..+..|...|..+..+
T Consensus 94 q~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLe-------aAk~Rve~L~~QL~~Ar~D 166 (188)
T PF05335_consen 94 QANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLE-------AAKRRVEELQRQLQAARAD 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444445555544444444444444444444433222222 2334455555555555555
Q ss_pred HHHHHHhHHHHH
Q 035694 117 LEALKLATDEER 128 (336)
Q Consensus 117 aE~AK~ea~~ar 128 (336)
.+..|..+..+-
T Consensus 167 ~~~tk~aA~kA~ 178 (188)
T PF05335_consen 167 YEKTKKAAYKAA 178 (188)
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.98 E-value=22 Score=38.98 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHh
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe 90 (336)
.|..||+++|++|...|+.|..--..|.+|..-=...+.+|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~ 463 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELS 463 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHH
Confidence 566677777777777776665555555544443333333333
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.98 E-value=93 Score=30.94 Aligned_cols=39 Identities=18% Similarity=0.012 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHh
Q 035694 28 KTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN 66 (336)
Q Consensus 28 eaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKe 66 (336)
.++.+..........+-..+..|+.....++.++..|++
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444433
No 66
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.39 E-value=1.1e+02 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhh---------------hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWL---------------DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELD 83 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~---------------aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ 83 (336)
+.....+|..++..+..+..-...+.. ...+|+..|.....++..+..+-....-.|..|..+|.
T Consensus 206 l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~ 285 (498)
T TIGR03007 206 ISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIA 285 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 344444455555555444444444443 13366677777888888888888888888888888887
Q ss_pred hhHHHHhh
Q 035694 84 STTKSIMS 91 (336)
Q Consensus 84 ktk~eLe~ 91 (336)
..+..+..
T Consensus 286 ~l~~~l~~ 293 (498)
T TIGR03007 286 QLEEQKEE 293 (498)
T ss_pred HHHHHHHh
Confidence 77776543
No 67
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.21 E-value=51 Score=32.61 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 133 NLKQVLRLKRQKLRTSQLALRATRIES 159 (336)
Q Consensus 133 klkeEaEqaKa~i~taE~RL~Aa~kE~ 159 (336)
.+.-+.-+-......+..++..+...+
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444333
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.89 E-value=61 Score=30.40 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHhHH
Q 035694 49 PLIDELERLKATLASDK 65 (336)
Q Consensus 49 sLr~ELekeK~eLa~lK 65 (336)
+++.-|..++.+++.++
T Consensus 90 ~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 90 SLRTRVPDLENQVKTLT 106 (206)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.87 E-value=63 Score=28.48 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=51.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 035694 43 SWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKL 122 (336)
Q Consensus 43 lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ 122 (336)
|++-.+...+-.+.....+-.+.++.....-.|.+|...+..+..+|+.+...=. .++....+.+....
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~-----------~~k~~lee~~~~~~ 73 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK-----------EAKEKLEESEKRKS 73 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHH
Confidence 4444444444444444555555555555555555555555555544444332211 11122223333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 123 ATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 123 ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
..+.....+.-|-++++.+...+.++..+|+-+-.
T Consensus 74 ~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666665443
No 70
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.69 E-value=1e+02 Score=34.53 Aligned_cols=120 Identities=24% Similarity=0.292 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH-H
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE-V 97 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E-~ 97 (336)
|..+..||-.=-..+-++...-...-....-|..+++.+-++|-++++++.|+..--..|=...+ +...+.-.+ -
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd----Erlqlhlkerm 212 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD----ERLQLHLKERM 212 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH----HHHHHHHHHHH
Confidence 44455566555556666666666666677788888899999999999998887765555433322 111111111 2
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035694 98 NATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR 142 (336)
Q Consensus 98 kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK 142 (336)
.+.+..+-|+..+.++.+-.+.++...+.-+.....|+++++|-+
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233455566666666666666666666666666666666666655
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.28 E-value=1.4e+02 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASD 64 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~l 64 (336)
+..+..+|+++...++.+.++...+.....-+..+++..+.++..+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555544444444
No 72
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.04 E-value=99 Score=30.39 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 130 ARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 130 E~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
+...|..+.+.++.....+-.+++.+.
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655554
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.54 E-value=42 Score=30.53 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 132 SNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 132 ~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
..+..|+..-......+|.++.....
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.77 E-value=86 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 137 VLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 137 EaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
........+...+.++......+...+..
T Consensus 120 ~~~~~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 120 QLEELQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455554544444444444
No 75
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.30 E-value=1.1e+02 Score=33.63 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhc
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRC 68 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere 68 (336)
......++......+++...+...|..-.+-|+.++++++.+|++++.+.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777776666666666666666666666665443
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.72 E-value=1.1e+02 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhHHHhhhhh
Q 035694 30 KAELKRAKDNAMQSWLDSK 48 (336)
Q Consensus 30 K~~Lekak~E~~~lr~aae 48 (336)
...|++.+++.-.++-+|+
T Consensus 201 ~~~l~~L~~~~~~l~kdVE 219 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVE 219 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 77
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=69.61 E-value=88 Score=28.39 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHH
Q 035694 28 KTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELS 107 (336)
Q Consensus 28 eaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~ 107 (336)
.+-..|+.-+++++.+ ++..|.|++..+.+|..++......-..|-.|+..-.+++..|.-|-
T Consensus 6 ~ti~~ie~sK~qIf~I---~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS-------------- 68 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEI---AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS-------------- 68 (159)
T ss_pred HHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3444555566665554 56679999999999999999888888888888888888877765443
Q ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 108 QALAET-RQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRA 164 (336)
Q Consensus 108 ~~Lqql-~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkA 164 (336)
+-.+.- ..+...|=-.|...+-.+..+++.-.+-+.--+.+|.||.-...-++-|--
T Consensus 69 ~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 69 RNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 133334444455555555555555556666666666666666666655443
No 78
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=68.85 E-value=52 Score=33.23 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 28 KTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 28 eaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
+....|+|+..-...|.+-..||..+.......|+.++++-..++.-|++-...|+..-.+++.++..=
T Consensus 256 eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 256 EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888999999999999999999999999999999999999999988888888766443
No 79
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.02 E-value=1.5e+02 Score=33.54 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=75.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHhH----Hhhccch--------hhhh---h----hHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 43 SWLDSKPLIDELERLKATLASD----KNRCSMS--------NMIV---S----ELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 43 lr~aaesLr~ELekeK~eLa~l----Kere~~a--------sa~V---~----sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
+-+++-+||.|-..++.-|--| ++++..- +..+ + +|+.+|+-....++.++.+.
T Consensus 385 IALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kn------- 457 (861)
T PF15254_consen 385 IALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKN------- 457 (861)
T ss_pred hHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhH-------
Confidence 4567889999999888887655 4444432 1222 2 34456666666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLA-----------TDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~e-----------a~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
.+|.+.+.....|-.....+ ...---|..++|-|++++-+.+...+++|.++-+|--...-.
T Consensus 458 eellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it 530 (861)
T PF15254_consen 458 EELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT 530 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH
Confidence 33444444444444333333 333445778899999999999999999999999987666554
No 80
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.99 E-value=2.6e+02 Score=34.47 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=102.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhc--c-----------ch--hhhhhhHH
Q 035694 15 NTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRC--S-----------MS--NMIVSELQ 79 (336)
Q Consensus 15 ~~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere--~-----------~a--sa~V~sLe 79 (336)
|.........=+..+...|............-+++|-++....+..|+.+...- . +. ...+..|+
T Consensus 563 ~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe 642 (1822)
T KOG4674|consen 563 DKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLE 642 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHH
Confidence 555555566667777777888888888888889999999999988888776651 1 11 45566666
Q ss_pred HHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 80 AELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154 (336)
Q Consensus 80 ~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~A 154 (336)
..|...+.+-. +-.....+....|...+..++.+.+........+++.+..|...++..|..+.|++.|-.-
T Consensus 643 ~~le~~~~E~~---~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~ 714 (1822)
T KOG4674|consen 643 NELESYKKEKR---ENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKN 714 (1822)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554422 2234455677788888888889999999999999999999999999999999988876443
No 81
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.59 E-value=2.9e+02 Score=34.04 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH-----------HhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQ-----------SWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTK 87 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~-----------lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~ 87 (336)
......+|..+|..++.-.+++.. ....++.+..++..+...|..++..-.+..+.+++|+.+|.....
T Consensus 807 i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 807 IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344445555555555544444333 345677788888888999999999999999999999999999888
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 88 SIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 88 eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
......... .-.+...++..|.....+....+..-..+...+...++.......++.-+..+|.-.+.+++|
T Consensus 887 ~~~~l~~~~--~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea 958 (1822)
T KOG4674|consen 887 QLLNLDSKS--SNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEA 958 (1822)
T ss_pred HHhhccccc--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 776655420 011222233333333334444455555555555555555555555555555444444444443
No 82
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.61 E-value=1.5e+02 Score=29.85 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=78.0
Q ss_pred ccccccCCCCC-cchhHHHHHHHHH-------HHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhh
Q 035694 5 DKERKENPGRN-TSDLEAKTAELVK-------TKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVS 76 (336)
Q Consensus 5 ~~e~~e~~~~~-~~~l~s~~~ELee-------aK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~ 76 (336)
+++|.|-.-+. ++-|+++..+.++ +...+++++||-+.|.-- +..++-.++..-.-|-++.+.+.+.+.
T Consensus 85 ~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk---mn~d~S~lkd~ne~LsQqLskaesK~n 161 (305)
T PF14915_consen 85 NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK---MNSDVSNLKDNNEILSQQLSKAESKFN 161 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH---hcchHHhHHHHhHHHHHHHHHHHHHHH
Confidence 34444433333 4557777777664 233456777777776644 366777788888889999999999999
Q ss_pred hHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035694 77 ELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNL 134 (336)
Q Consensus 77 sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~kl 134 (336)
+|+.+|..|+..|.-. .-....+..-|.|+.........+-...+..+.+.
T Consensus 162 sLe~elh~trdaLrEK-------tL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~ 212 (305)
T PF14915_consen 162 SLEIELHHTRDALREK-------TLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKY 212 (305)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999765421 23445566666666666555555555555444443
No 83
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.00 E-value=1.1e+02 Score=35.50 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhH------------------
Q 035694 17 SDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSEL------------------ 78 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sL------------------ 78 (336)
+.......|+.+++..+..+..+...|---..++-+.|++...+.-.+=.......+.||-+
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L 928 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGL 928 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccc
Confidence 33445556667777777777777777776677777777777777666666666666655533
Q ss_pred ------HHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035694 79 ------QAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQV 137 (336)
Q Consensus 79 ------e~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeE 137 (336)
+.+|+...+.|... +=-.++-..+..+. .++...|.|+||+.|..++...-++|..
T Consensus 929 ~~~y~L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~ 990 (1141)
T KOG0018|consen 929 PREYKLQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKK 990 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444432 11123334444444 7777888888888888777777666654
No 84
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.28 E-value=1.3e+02 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHH
Q 035694 23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERL 57 (336)
Q Consensus 23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELeke 57 (336)
..+|..++..|..+......+......+..++...
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~ 113 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESL 113 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555554444444333333333333
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.05 E-value=1.8e+02 Score=29.93 Aligned_cols=20 Identities=0% Similarity=0.081 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 035694 24 AELVKTKAELKRAKDNAMQS 43 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~l 43 (336)
.+++.....+.........+
T Consensus 181 ~~i~~l~~~i~~l~~~i~~~ 200 (562)
T PHA02562 181 QQIQTLDMKIDHIQQQIKTY 200 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.47 E-value=2e+02 Score=30.19 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTT 86 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk 86 (336)
|..+..+++.....|....+....|.....+|..++..+...|..+........--|..++..|+...
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777776666666666666666665555443
No 87
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.31 E-value=1.4e+02 Score=28.48 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=32.1
Q ss_pred hhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 71 SNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQL 150 (336)
Q Consensus 71 asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~ 150 (336)
+.-.|..|+.++..+..+-..+......+...+..|...-.....|-+.+-........++..+.++.+.......-.+.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333332223333333332222222333333333333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 035694 151 ALRATRIESEACRA 164 (336)
Q Consensus 151 RL~Aa~kE~EAAkA 164 (336)
.|..|....+.++.
T Consensus 111 el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 111 ELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 88
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.78 E-value=1.2e+02 Score=30.33 Aligned_cols=69 Identities=23% Similarity=0.261 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTK 87 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~ 87 (336)
|++...=|...|-..+..+.+...|..---+|....+++-..-..+-.-...-+..|..|+.+|+.++.
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443344444444455556666666665553
No 89
>PRK12472 hypothetical protein; Provisional
Probab=61.18 E-value=2e+02 Score=30.76 Aligned_cols=106 Identities=21% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeecHHHHH
Q 035694 113 TRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYH 192 (336)
Q Consensus 113 l~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~~~VTLS~eEY~ 192 (336)
+..|+++|-..+..++.-+.+...|+..+.+.++.+| ++....++-=+++..+|...+.++.
T Consensus 195 ~~~e~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~e----~~~~~a~~~l~~adk~l~~a~~d~~-------------- 256 (508)
T PRK12472 195 LAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLE----RAKARADAELKRADKALAAAKTDEA-------------- 256 (508)
T ss_pred ccccHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchh--------------
Confidence 4445555555555555555555555555555555444 2222333333333334444442221
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 035694 193 ALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRR 238 (336)
Q Consensus 193 ~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke~~ 238 (336)
..|+.+....+..+++.|..|.+.|++--.....-+..++..++
T Consensus 257 --~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~ 300 (508)
T PRK12472 257 --KARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAK 300 (508)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 23566777888888888888988888766655555555555443
No 90
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.83 E-value=2.8e+02 Score=31.08 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEV 97 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~ 97 (336)
+|.....+..+....|.-+.......-.-+..|+.||++++---..|-.....-+..-..|.-+-.....++-..++.=.
T Consensus 444 llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~ 523 (786)
T PF05483_consen 444 LLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDIN 523 (786)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35555667777777777777777777777888888888877666666555555444444454444444445444444333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035694 98 NATMMIKELSQALAETRQELEALKLATDEERRARSN 133 (336)
Q Consensus 98 kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~k 133 (336)
..+.....|...++.|-..--++|-+.+..++++..
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~ 559 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ 559 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333344444444433333
No 91
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.66 E-value=2.6e+02 Score=30.30 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694 16 TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE 95 (336)
Q Consensus 16 ~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~ 95 (336)
..+-.--..||-.++.-|+.+..+-..|..-...|+.|++..+.-+.........+-..+-.+..-|.....++..+.
T Consensus 84 s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k-- 161 (546)
T KOG0977|consen 84 SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK-- 161 (546)
T ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH--
Confidence 334344557888888888888777777777777777777766666666544444444444444444444444444433
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 96 EVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 96 E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
..+..+-.|...++.+-.-.+.++..++..+++....-...+.+++..+.+++-.+-.
T Consensus 162 ------------rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 162 ------------RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred ------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 2233444555555555555556666666666666666677777777777777776655
No 92
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.03 E-value=2.9e+02 Score=30.82 Aligned_cols=9 Identities=0% Similarity=0.242 Sum_probs=4.8
Q ss_pred eeecHHHHH
Q 035694 184 VQMTQEEYH 192 (336)
Q Consensus 184 VTLS~eEY~ 192 (336)
++++..+..
T Consensus 672 ~~v~~~~l~ 680 (782)
T PRK00409 672 MKVPLSDLE 680 (782)
T ss_pred EEEeHHHce
Confidence 445666554
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=57.98 E-value=2.9e+02 Score=30.27 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 035694 77 ELQAELD 83 (336)
Q Consensus 77 sLe~eL~ 83 (336)
.|+.+|.
T Consensus 263 ~l~~el~ 269 (880)
T PRK03918 263 ELEERIE 269 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.60 E-value=3.2e+02 Score=30.75 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 119 ALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESE 160 (336)
Q Consensus 119 ~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~E 160 (336)
.+..+....+..+..|..|++.-|+.-.....+|+-...+++
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~ 711 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELE 711 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 334444444444445555555555544444444444444433
No 95
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.30 E-value=3.8e+02 Score=31.43 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
.||.++...|++.-..-...---..-++..|.++......++ ..|..|+..|.--+.+.+.+.+.+.+.-..-
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~-------~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k 302 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLK-------CEIKELENKLTNLREEKEQLKARETKISKKK 302 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444433333333333334444444444444433 3345555555555555555555543333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
..|...+.++.++.+--+.-...+-..+.+++..++..+..+.+.+-+-...+.+..-
T Consensus 303 t~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~ 360 (1200)
T KOG0964|consen 303 TKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKR 360 (1200)
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 4455556666666666666566666666677777777777777766666655554433
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.19 E-value=2.2e+02 Score=28.66 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 17 SDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
..+.....-|.....+-...+.|++.|......+- +++..-+..--.....++..|.+|..+|.+-..+..--+..=
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E---ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE---EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666665554332 234444555567778899999999999999888776655554
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 97 VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIE 158 (336)
Q Consensus 97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE 158 (336)
..-..-+.++...+++...|.|....-...++.--..|..|+.--+..-.....-|.-+..|
T Consensus 237 t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 237 TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557788999999999999999999888888877777777555444444444444444433
No 97
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=56.89 E-value=1.5e+02 Score=26.59 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhH-----hHHHHHHHHHHHHHHHHHHHHhHH
Q 035694 51 IDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATM-----MIKELSQALAETRQELEALKLATD 125 (336)
Q Consensus 51 r~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~-----~~~eL~~~Lqql~~EaE~AK~ea~ 125 (336)
+.||.++-..++++.++.+.+.-++++=.++|+.+...+.- ++.+.-+ -|.+-+ .
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e---ae~k~~~~~a~~P~~~~~-----------------~ 73 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE---AEIKQDEFFANNPPHEYG-----------------R 73 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCTT-TTSSCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHhcccccccCCCccccc-----------------c
Confidence 77888888888999999888888888877887777655432 2222111 111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 126 EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 126 ~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
..+.+++-+.-++.+..+.+.+++.+|-++--|+--.+++.-.|.+..+
T Consensus 74 ~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rk 122 (136)
T PF11570_consen 74 GWQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRK 122 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1224455566666666677777777776666666666665545554444
No 98
>PRK15396 murein lipoprotein; Provisional
Probab=55.60 E-value=71 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQ 143 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa 143 (336)
..|...++.|..+.+++...+..++..+..+++|+.-+-.
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~ 67 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 99
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.83 E-value=2.2e+02 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=14.8
Q ss_pred cchhhhhhhHHHHHHhhHHHHhh
Q 035694 69 SMSNMIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 69 ~~asa~V~sLe~eL~ktk~eLe~ 91 (336)
..+...|..|+.+|...+-.|+.
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~ 33 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEE 33 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777776666554
No 100
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.47 E-value=2.4e+02 Score=28.09 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=59.4
Q ss_pred HHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035694 54 LERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSN 133 (336)
Q Consensus 54 LekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~k 133 (336)
+...+.+|..+.++-..+=++-+.|--+=......+.+++..=..-.+.+..+.+.+.....+.+..|..-...+.++..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446777777777777666666666666666666666665544445566666666666667777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 035694 134 LKQVLRLKRQKL 145 (336)
Q Consensus 134 lkeEaEqaKa~i 145 (336)
|+.++.+...-|
T Consensus 159 Lre~L~~rdeli 170 (302)
T PF09738_consen 159 LREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHH
Confidence 776665554444
No 101
>PRK03918 chromosome segregation protein; Provisional
Probab=53.24 E-value=3.4e+02 Score=29.70 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 035694 82 LDSTTKS 88 (336)
Q Consensus 82 L~ktk~e 88 (336)
+.....+
T Consensus 261 i~~l~~e 267 (880)
T PRK03918 261 IRELEER 267 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 102
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.95 E-value=98 Score=30.42 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=7.6
Q ss_pred hhhHHHHHHhhHHHHhhhH
Q 035694 75 VSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 75 V~sLe~eL~ktk~eLe~~~ 93 (336)
|.++..++..++..|..+.
T Consensus 171 i~~~~~~~~~~~~~l~~l~ 189 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLA 189 (267)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 103
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.68 E-value=82 Score=24.20 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLR 139 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaE 139 (336)
+..|...++|++.+...++..+..+++|+..+-+.+.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554444
No 104
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.60 E-value=1.6e+02 Score=27.02 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 035694 110 LAETRQELEALKL 122 (336)
Q Consensus 110 Lqql~~EaE~AK~ 122 (336)
|+++..++..++.
T Consensus 137 i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 137 IEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 105
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.37 E-value=2.1e+02 Score=26.96 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 38 DNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 38 ~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
.....+-.-...|..++..+..+++.|+.....-...|.+++.++......+..+..-.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556667777777777777777777777777788888887777777666554
No 106
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.71 E-value=94 Score=24.08 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEAL 120 (336)
Q Consensus 105 eL~~~Lqql~~EaE~A 120 (336)
+|...|..+..+++.+
T Consensus 43 eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 43 ELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444443
No 107
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.67 E-value=3.5e+02 Score=29.40 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHh
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe 90 (336)
.|+.+|......++.+..+-+...-.|..|+.+|...+..|.
T Consensus 292 ~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 292 RLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666667777766666665543
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.59 E-value=1.6e+02 Score=25.49 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhh
Q 035694 16 TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSK 92 (336)
Q Consensus 16 ~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~ 92 (336)
..++......|...-.++.-.+++...|-..=+.|+.||-+.-.+.+.++ .....+..|+.+|.....+..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666655555552 23344555555555555544443
No 109
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.42 E-value=5.2e+02 Score=31.32 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=9.1
Q ss_pred CceeecHHHHHHHHHHHH
Q 035694 182 ITVQMTQEEYHALKRRAE 199 (336)
Q Consensus 182 ~~VTLS~eEY~~Ls~rA~ 199 (336)
+.-.||.++....-..-.
T Consensus 431 ~~~~~SdEeLe~~LenF~ 448 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQ 448 (1486)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 334566666554443333
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.25 E-value=1.1e+02 Score=23.49 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLR 146 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ 146 (336)
.+..|..-+++|....+++......++.++..+++|+..+..-|.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777766666666666665555443
No 111
>PF15294 Leu_zip: Leucine zipper
Probab=51.20 E-value=2.6e+02 Score=27.76 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHh---------hHhHHHHHHHHHHHHHHHHHH
Q 035694 50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNA---------TMMIKELSQALAETRQELEAL 120 (336)
Q Consensus 50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~ka---------r~~~~eL~~~Lqql~~EaE~A 120 (336)
|..|+.+++.+...|+.|...-.......=.+=.+....|.-.+...... ...+.+|...|..+..+.+.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 77777777777777777665544444333222222222222222211111 124566777777777666655
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 121 KLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 121 K~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
...--.....++..+-.++..+--.+-.|..+-+|.+. +-.++.+...++
T Consensus 210 ---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek-KfqqT~ay~NMk 259 (278)
T PF15294_consen 210 ---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK-KFQQTAAYRNMK 259 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH-HhCccHHHHHhH
Confidence 22233355567777888888887777778888888776 555555555554
No 112
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.79 E-value=1.9e+02 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHhHHh
Q 035694 48 KPLIDELERLKATLASDKN 66 (336)
Q Consensus 48 esLr~ELekeK~eLa~lKe 66 (336)
..|+.+.++++.+++.+++
T Consensus 76 ~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.70 E-value=3.8e+02 Score=29.27 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVN 98 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~k 98 (336)
+.+.-.+|.+.-.++++-..-..+++---.+|++++-+-++-+..++.+-..=.-.+.-|.+++..--.+++.++.....
T Consensus 240 l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~ 319 (581)
T KOG0995|consen 240 LKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDE 319 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666667777888888888899999999999888888777788888888888888888888876543
Q ss_pred hhH----------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 99 ATM----------MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 99 ar~----------~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
-+. ....|....+++.+++..+..+.+.-+.++=.++-+++--.-.+.+.=..|-....
T Consensus 320 Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 320 LKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34446666666666666666666666666666666665555555544444433333
No 114
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.63 E-value=4.2e+02 Score=29.57 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=4.6
Q ss_pred eeecHHHHH
Q 035694 184 VQMTQEEYH 192 (336)
Q Consensus 184 VTLS~eEY~ 192 (336)
++++..+..
T Consensus 660 ~~v~~~~l~ 668 (771)
T TIGR01069 660 MKVHGSELE 668 (771)
T ss_pred EEEeHHHce
Confidence 445555544
No 115
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.32 E-value=3.6e+02 Score=28.53 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHH-HHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 25 ELVKTKAELKRA-KDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 25 ELeeaK~~Leka-k~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
.|..+...|..+ -.....+-....++..+|+-...+|........-.... |+.....|........+....+
T Consensus 252 ~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~-------L~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 252 GLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPER-------LNEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHHHHHHhCCCH
Confidence 344444444443 12223333444444555555555555554444333333 4444444444445555566678
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
.++...++++..+.+....... .+..+.+++...+..+...-..|...++
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776544332 4445555555555555555444444433
No 116
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.17 E-value=2.5e+02 Score=26.74 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=116.0
Q ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccc-hhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHH
Q 035694 38 DNAMQSWLDSKPLIDELERLKATLASDKNRCSM-SNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQE 116 (336)
Q Consensus 38 ~E~~~lr~aaesLr~ELekeK~eLa~lKere~~-asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~E 116 (336)
+-....=--|-.|-.+=..+...+..++.+.+. .+-.-.-++.+|...+..|..+...-.+.......+...++.+...
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k 90 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH
Confidence 333334444555666666677777777777433 3335566788888888888777666666666777888888888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------CCCCceeec--
Q 035694 117 LEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISET-------DGAITVQMT-- 187 (336)
Q Consensus 117 aE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~-------~~~~~VTLS-- 187 (336)
.+.....-..+..++..++.+++........++.+++....|+...+..=-.-+..|...-. +.+....|+
T Consensus 91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~ 170 (312)
T PF00038_consen 91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAA 170 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhh
Confidence 88888888999999999999999999999999999999999999887773333344431100 001111121
Q ss_pred ----HHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHH
Q 035694 188 ----QEEYHALKRRAE-EEASLAEWRVSVSMEQREG 218 (336)
Q Consensus 188 ----~eEY~~Ls~rA~-EaEelA~kRVaaA~aqVea 218 (336)
..+|+....+-. +++..-..+|.....++..
T Consensus 171 L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 171 LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 236776665544 6666666666665555443
No 117
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.83 E-value=2.3e+02 Score=26.27 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIE 158 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE 158 (336)
+.++...|+......................+..++...+..+..++..+...+..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 93 LEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333332222333334445555566666666666555555444443
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.48 E-value=61 Score=28.65 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
.||.++..+|...+++...+......|+.||..+...+..- .....|.+|+.++......|+.++.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-----el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-----ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555444211 1223445555555555555554443
No 119
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=47.13 E-value=1e+02 Score=25.47 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 035694 112 ETRQELEALKLATDEERRARSN 133 (336)
Q Consensus 112 ql~~EaE~AK~ea~~areE~~k 133 (336)
|+..++..++..+..+++|+..
T Consensus 42 ql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 42 RLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 120
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.61 E-value=2.7e+02 Score=26.61 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
.-|.++.....++..++...--.+..|-.++.....+-..|..+-..+......|+.+-..+..+ +
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-----------k--- 77 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-----------K--- 77 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H---
Confidence 44556666666776666666666666666666666665555554443333333333332222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLAL 152 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL 152 (336)
..|...+..+..++.....+...--.++..++.++..++.....+..+|
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244444455555555555555555555555555555555544444444
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.57 E-value=2.7e+02 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR 142 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK 142 (336)
+++.|-..+.++..|-+..+..+....++...++.++..-+
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777778887777777777777777777776543
No 122
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.48 E-value=5.4e+02 Score=30.10 Aligned_cols=116 Identities=26% Similarity=0.286 Sum_probs=67.3
Q ss_pred HHHHHHHHHHH---HHHH-----HhHHH---hhhhhhHHHHHHHHHHHHHhHHhhcc----------------chhhhhh
Q 035694 24 AELVKTKAELK---RAKD-----NAMQS---WLDSKPLIDELERLKATLASDKNRCS----------------MSNMIVS 76 (336)
Q Consensus 24 ~ELeeaK~~Le---kak~-----E~~~l---r~aaesLr~ELekeK~eLa~lKere~----------------~asa~V~ 76 (336)
..|++.--.|+ ||++ ++++. .+...-|-.||+++|..|.+.+++.+ .....|.
T Consensus 372 ~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ie 451 (1041)
T KOG0243|consen 372 HNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIE 451 (1041)
T ss_pred ccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHH
Confidence 45566666665 3332 34432 34566778899999999999987543 3455666
Q ss_pred hHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 77 ELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLR 146 (336)
Q Consensus 77 sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ 146 (336)
.|+.+|.-....|..+++.- ..+...-..+..+.+..+.....--.++.-++.++.++++.+.
T Consensus 452 ele~el~~~~~~l~~~~e~~-------~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 452 ELEEELENLEKQLKDLTELY-------MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555442 1122222345555555555555555555555666655555533
No 123
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=45.77 E-value=3.3e+02 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 035694 24 AELVKTKAELKRAK 37 (336)
Q Consensus 24 ~ELeeaK~~Lekak 37 (336)
..|.+++.+|..+.
T Consensus 99 ~~l~~A~a~l~~a~ 112 (390)
T PRK15136 99 QAFEKAKTALANSV 112 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 124
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=45.34 E-value=50 Score=33.34 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHH
Q 035694 33 LKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAE 112 (336)
Q Consensus 33 Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqq 112 (336)
|.-+.+.+..|..++.+|..-+-.+...+..|.-....-...|.++..+|+.....|..++.-=..-...+.+|+..|..
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence 33344444444444444444444444444444444444455555555555555555544443322223445556666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 113 TRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154 (336)
Q Consensus 113 l~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~A 154 (336)
...-+-.+........-.+..+|..+-.--..|..+|.|+.+
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 666666666777777777777777776666667777777654
No 125
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.10 E-value=2.6e+02 Score=25.96 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 98 NATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 98 kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
+....+.+|-..|-++..+...++...+.+..++..++..+...+..+..++.+-+.+.
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456777777777777777777777777777777787777777777777777766543
No 126
>PRK11281 hypothetical protein; Provisional
Probab=45.03 E-value=3e+02 Score=32.30 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=26.7
Q ss_pred CceeecHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHhhH
Q 035694 182 ITVQMTQEEYHALKRRAEEE--------ASLAEWRVSVSMEQREGVEASR 223 (336)
Q Consensus 182 ~~VTLS~eEY~~Ls~rA~Ea--------EelA~kRVaaA~aqVeaAKaSE 223 (336)
.-..|..--++++..+...- +.+.++|...+...++.|..++
T Consensus 220 ~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~ 269 (1113)
T PRK11281 220 QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQD 269 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44666666666666666533 4467778887777777765433
No 127
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.48 E-value=2.8e+02 Score=26.28 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035694 57 LKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQ 136 (336)
Q Consensus 57 eK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klke 136 (336)
+|.-|-..+...++-...|.+|...|..++..+......-....+....=...|.....|..+.+.++..-++.+..+..
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence 34444444444455556667777777777766665443333333333334445555556666666666666666666665
Q ss_pred HHHHHHHHHHH
Q 035694 137 VLRLKRQKLRT 147 (336)
Q Consensus 137 EaEqaKa~i~t 147 (336)
++-.-+..+..
T Consensus 95 El~~Lr~~l~~ 105 (202)
T PF06818_consen 95 ELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHh
Confidence 55544444433
No 128
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.06 E-value=5e+02 Score=28.96 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=84.5
Q ss_pred chhHHHHH---HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccch------------------hhhh
Q 035694 17 SDLEAKTA---ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMS------------------NMIV 75 (336)
Q Consensus 17 ~~l~s~~~---ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~a------------------sa~V 75 (336)
..|.++.. .+.+++..|..+......|+.....|++.|-.+|..|..+-...+.+ -..+
T Consensus 236 ~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qL 315 (806)
T PF05478_consen 236 PALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQL 315 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccC
Confidence 45777777 99999999999999999999999999999999999999988774444 1246
Q ss_pred hhHHHHHHhhHHHHhhh-HHHHHHhhHhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035694 76 SELQAELDSTTKSIMSK-KEEEVNATMMIKELSQALA-ETRQELEALKLATDEERRARSNLKQVLRL 140 (336)
Q Consensus 76 ~sLe~eL~ktk~eLe~~-~~~E~kar~~~~eL~~~Lq-ql~~EaE~AK~ea~~areE~~klkeEaEq 140 (336)
+++...|+..+.-+.+- ..--.++.....+||..++ ++..-...++...+.....+...-..+-.
T Consensus 316 P~v~~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~ 382 (806)
T PF05478_consen 316 PNVTSQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPN 382 (806)
T ss_pred CChHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67777777766544331 1122455566677776665 33344445555555555555544444433
No 129
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.84 E-value=2.3e+02 Score=24.93 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 035694 42 QSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALK 121 (336)
Q Consensus 42 ~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK 121 (336)
.+..++.++..-|+++-..|...|.... ..+..|-..|++...=.+..+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLs-------------------------------qRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLS-------------------------------QRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhhHHHHHHHHHHHH
Confidence 3455677777777777777777665442 122223333333333344444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 122 LATDEERRARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 122 ~ea~~areE~~klkeEaEqaKa~i~taE~RL~ 153 (336)
.+....+..+..+..++......+..++.+|-
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666667777777776663
No 130
>PRK15396 murein lipoprotein; Provisional
Probab=42.97 E-value=1.4e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRL 140 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEq 140 (336)
.+..|....+++..++..++..+..+++|+..+-+.++.
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666665554
No 131
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.34 E-value=3e+02 Score=25.99 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035694 51 IDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRA 130 (336)
Q Consensus 51 r~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE 130 (336)
..++.++..+.+.+..-......+.+.|+....+.+.-|.....-|..-+..+.+....|.+..+-.+.+|.-++ +.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe---ek 144 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE---EK 144 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 455666666666666666777788889999999999999999888888888888887777777776666666555 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 131 RSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 131 ~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
+..+-.++.+.+.....=-..|+|.++-.+--..|
T Consensus 145 L~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~S 179 (207)
T PF05010_consen 145 LEKANEEIAQVRSKHQAELLALQASLKKEEMKVQS 179 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777777777766655555
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.26 E-value=2.6e+02 Score=24.83 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHH
Q 035694 25 ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDK 65 (336)
Q Consensus 25 ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lK 65 (336)
++.+....+.....+..+++.-...+..++...+.....+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555555555555555555555555555555555554444
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.63 E-value=5.1e+02 Score=27.86 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694 19 LEAKTAELVKTKAELKRA--KDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE 96 (336)
Q Consensus 19 l~s~~~ELeeaK~~Leka--k~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E 96 (336)
+..+..||+++...|..+ .++...+......+..+|.+.+.++..+.++.......+..|+.++.+-...........
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 479 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELE 479 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhH
Q 035694 97 VNATMMIKELSQALAETRQELEALKLAT 124 (336)
Q Consensus 97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea 124 (336)
+.-.....+...|..............
T Consensus 480 -~~~~~~~~~~~~l~~~~~~l~~~~~~~ 506 (650)
T TIGR03185 480 -RAITIADKAKKTLKEFREKLLERKLQQ 506 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.51 E-value=8.7e+02 Score=30.48 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 035694 42 QSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALK 121 (336)
Q Consensus 42 ~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK 121 (336)
.|..-++.+..++++.....+.|..+....+..+............++...+..........-.+...|..+....+.++
T Consensus 1411 ~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~ 1490 (1930)
T KOG0161|consen 1411 RLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELR 1490 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777778888888888888888888888888888888888887666655555666666667777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 122 LATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACR 163 (336)
Q Consensus 122 ~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAk 163 (336)
.+-...+.++..+..-....-..+..+|.-++..-.+++...
T Consensus 1491 renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1491 RENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666665555554444444444444333333333
No 135
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=39.37 E-value=1.7e+02 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKL 145 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i 145 (336)
.+..|...++.+....+++...+..++..+..+++|+..+..-|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555555555554444443
No 136
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.26 E-value=3.4e+02 Score=25.67 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~ 93 (336)
.|-.+...++.+...|..-.......+.-+..+..+|..+..+...|+.+...+...+..|......|...-..+.
T Consensus 18 ~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 18 APYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788888888888787888888889999999999999999999999999999999988888887655443
No 137
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.97 E-value=98 Score=23.96 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhh
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~ 91 (336)
.|..||.+++...-.+..+...+..-...|..++..-+.+++-
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888888777777766554
No 138
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.27 E-value=3.4e+02 Score=25.37 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=57.6
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 035694 39 NAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELE 118 (336)
Q Consensus 39 E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE 118 (336)
+.-+|..+...++.+.+.+-..|..+-+.....-..+..+..++...+..+ ...+..+...++.+...++
T Consensus 54 e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~----------~~~~~k~qk~~~~~~~~l~ 123 (239)
T cd07647 54 EIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKT----------EDIMKRSQKNKKELYKKTM 123 (239)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 334677777777778777777777776555443222333333333332222 2344444444555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 035694 119 ALKLATDEERRARSNLKQVLRLKR-----QKLRTSQLALRATRIESEACRA 164 (336)
Q Consensus 119 ~AK~ea~~areE~~klkeEaEqaK-----a~i~taE~RL~Aa~kE~EAAkA 164 (336)
.+|..=+..+.++..+.+-.+... ..+.-++.++.-+...++.++.
T Consensus 124 KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~ 174 (239)
T cd07647 124 KAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADS 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544443333222 2334444444444444444443
No 139
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.08 E-value=2.8e+02 Score=29.85 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 79 QAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIE 158 (336)
Q Consensus 79 e~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE 158 (336)
..++...+..++.+... .+.. |..|+++..+++..+.+....+..+..++.++...+.. ....
T Consensus 190 ~~~~~~yk~~v~~i~~~------~ik~-p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~----------~~~~ 252 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKK------DIKN-PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ----------LKAD 252 (555)
T ss_pred chhHHHHHHHHHHHHhc------cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHH
Confidence 55666666666655442 1222 55666888888888888887777777777766665443 3344
Q ss_pred HHHHHHHHHHHHHHhh
Q 035694 159 SEACRASAAEALRCIG 174 (336)
Q Consensus 159 ~EAAkASea~Al~~Lk 174 (336)
+.+.+++-..-++.|.
T Consensus 253 ~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 253 LAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHHhccHhHHHHHH
Confidence 4455555555555565
No 140
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.80 E-value=1.8e+02 Score=28.88 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~ 93 (336)
.+..+...|...+..|..+.+.+..|....+....+...+..++.....+...+...+..|..|-.+=...+....
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 4566667777777777777777777777777767777777777777777888888888888887776665555443
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.77 E-value=6.4e+02 Score=28.46 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCc
Q 035694 107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGI---SETDGAIT 183 (336)
Q Consensus 107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~---Se~~~~~~ 183 (336)
......+..+.+.++.+.......+......++..+..+..+|..|.....+++.++.|...+-.+|+. +....-..
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334446677888888888888888999999999999999999999999999999999997777666653 22111133
Q ss_pred eeecHHHHHHHHHHHHHHH
Q 035694 184 VQMTQEEYHALKRRAEEEA 202 (336)
Q Consensus 184 VTLS~eEY~~Ls~rA~EaE 202 (336)
.+....|-..|..++.--+
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le 686 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLE 686 (769)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555677788877765444
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.33 E-value=4.5e+02 Score=26.50 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 035694 47 SKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDE 126 (336)
Q Consensus 47 aesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~ 126 (336)
+..|..||.+-..+...-++....--+.|..|+..+.....+-+-++.-=..+++.-..|...|..+..--.+.-..-+.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555554443333444444444443333322222222233445555666666666666666666666
Q ss_pred HHHHHHHHH
Q 035694 127 ERRARSNLK 135 (336)
Q Consensus 127 areE~~klk 135 (336)
+++++..++
T Consensus 295 aQEElk~lR 303 (306)
T PF04849_consen 295 AQEELKTLR 303 (306)
T ss_pred HHHHHHHhh
Confidence 777766654
No 143
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=37.10 E-value=18 Score=30.07 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhHHhh
Q 035694 52 DELERLKATLASDKNR 67 (336)
Q Consensus 52 ~ELekeK~eLa~lKer 67 (336)
.++..++..+..|..+
T Consensus 39 ~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 39 RENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 144
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=36.20 E-value=6.9e+02 Score=28.38 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH-HHHHHhh
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK-EEEVNAT 100 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~-~~E~kar 100 (336)
+..|+..+|--|.--.+=...++-.+.-+..|+.+++..+..++-.-..-.+....+++-++.++.+|.-.. .+...+|
T Consensus 500 L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear 579 (961)
T KOG4673|consen 500 LQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEAR 579 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHH
Confidence 334555555555444444567788888889999999999888887777777777777777777777663222 1222333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRAT-----------RIESEACRAS 165 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa-----------~kE~EAAkAS 165 (336)
..-..|-..+..|+.-+. ...+.+-..-..++.|++.-..-+.++|.|++-. ++.||+..+.
T Consensus 580 ~~~~~lvqqv~dLR~~L~---~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~t 652 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLS---KKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQET 652 (961)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 332223322222222111 1111111122346666776667777777777653 4556666555
No 145
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.19 E-value=4.4e+02 Score=26.09 Aligned_cols=69 Identities=20% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 106 LSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 106 L~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
+...|..+..|-+++..+....+.+...+.++-+.--......+..+.....+.+...+-=..+..+|.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777888888888888888888888888888888887545544443
No 146
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=36.11 E-value=12 Score=41.78 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhh-------hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWL-------DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~-------aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~ 93 (336)
+..|++++...|+++......+.. ...-++..+..+..+++.+.......+.-|..|..+|......++.+.
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le 432 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE 432 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334555555555555544433332 222233333344444444444444445555555555555555444433
No 147
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.87 E-value=7.8e+02 Score=28.89 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694 23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS 69 (336)
Q Consensus 23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~ 69 (336)
-.||.+.+.+....-+....--.....|..+.++........++++.
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444444445555555555555555555555543
No 148
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=35.30 E-value=4.2e+02 Score=25.59 Aligned_cols=191 Identities=17% Similarity=0.120 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH---H
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE---V 97 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E---~ 97 (336)
.|..||+ .|+.+++++|.|=. +|+..+.....+. ...+ .+|+.....|-.+.++. =
T Consensus 8 rVq~eLe----~LN~atd~IN~lE~-------~L~~ar~~fr~~l---~e~~-------~kL~~~~kkLg~~I~karPYy 66 (239)
T PF05276_consen 8 RVQEELE----KLNQATDEINRLEN-------ELDEARATFRRLL---SEST-------KKLNELAKKLGSCIEKARPYY 66 (239)
T ss_pred HHHHHHH----HHHHhHHHHHHHHH-------HHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHhchHH
Confidence 4445554 46667777766543 5555544443331 2222 23333333333333322 1
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Q 035694 98 NATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR----------------QKLRTSQLALRATRIESEA 161 (336)
Q Consensus 98 kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK----------------a~i~taE~RL~Aa~kE~EA 161 (336)
+++.....+...+|+++...+.|...-.++++-+..+.+.+.... ..+..+|.....+-.+=..
T Consensus 67 ea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~ 146 (239)
T PF05276_consen 67 EARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888889999999999999998888888766554333 2222222222222222111
Q ss_pred HHHH---HHHHHHHhhccccCCCCceeecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694 162 CRAS---AAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR 236 (336)
Q Consensus 162 AkAS---ea~Al~~Lk~Se~~~~~~VTLS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke 236 (336)
.-.. +-.-+..|+.. . ...|. --.=||++.-.-..-=+....+|..=..+|..+|.+=+.+|..|+.+..+
T Consensus 147 ~~~~~~~ae~~v~~Lek~--l-kr~I~-KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISee 220 (239)
T PF05276_consen 147 RARIYNEAEQRVQQLEKK--L-KRAIK-KSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEE 220 (239)
T ss_pred HHHHHHHHHHHHHHHHHH--H-HHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11112222211 1 11222 22347888777777777789999999999999999999999999999988
No 149
>PRK10698 phage shock protein PspA; Provisional
Probab=34.51 E-value=4e+02 Score=25.07 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHH-------
Q 035694 33 LKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKE------- 105 (336)
Q Consensus 33 Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~e------- 105 (336)
|+++-|=...|+....-++..|..++..++..-.......-.+..++.....-...-..+..+ -..+..-.
T Consensus 19 ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~--G~EdLAr~AL~~K~~ 96 (222)
T PRK10698 19 LEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRK--EKEDLARAALIEKQK 96 (222)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 106 LSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 106 L~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
....+..+..+.+.........+..+..|+..+..++..-.++-.|..+|.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.31 E-value=5.3e+02 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 133 NLKQVLRLKRQKLRTSQLALRATRIES 159 (336)
Q Consensus 133 klkeEaEqaKa~i~taE~RL~Aa~kE~ 159 (336)
.+..++......+..++.+|..+..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333443333333
No 151
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=33.95 E-value=4.5e+02 Score=25.54 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 035694 25 ELVKTKAELKRAK 37 (336)
Q Consensus 25 ELeeaK~~Lekak 37 (336)
.|.+++..|..+.
T Consensus 87 ~l~~a~a~l~~a~ 99 (346)
T PRK10476 87 TVAQAQADLALAD 99 (346)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.88 E-value=2.3e+02 Score=22.20 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=40.9
Q ss_pred hhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 72 NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRT 147 (336)
Q Consensus 72 sa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~t 147 (336)
.+.|..|...|+.....+..-. ..+..++.|=+.+-.-...+..+..+|++|.+.-+..+..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~--------------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHE--------------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777766655432 3445666677777777777777777787777776666443
No 153
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.72 E-value=5.1e+02 Score=26.10 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 72 NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLA 151 (336)
Q Consensus 72 sa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~R 151 (336)
++.|--|..+|.-+...|. ....-+.+|...|-.+..+-=+=-=---+|+-.+-+++.||.|-|+.|.|+...
T Consensus 67 EV~iRHLkakLkes~~~l~-------dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLH-------DRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H
Q 035694 152 L 152 (336)
Q Consensus 152 L 152 (336)
|
T Consensus 140 L 140 (305)
T PF15290_consen 140 L 140 (305)
T ss_pred h
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.47 E-value=4.1e+02 Score=27.50 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHH
Q 035694 1 METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQA 80 (336)
Q Consensus 1 ~~~~~~e~~e~~~~~~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~ 80 (336)
+|+-.+|..+.+..++.++ .+|-.+..=+-+++++...+-..+.-++.|-......|..+.+..+.-.-..+.|+-
T Consensus 94 ~~e~q~e~~qL~~qnqkL~----nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLK----NQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Q ss_pred HHHhhHHHHhhhHHHH-----------HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035694 81 ELDSTTKSIMSKKEEE-----------VNATMMIKELSQALAETRQELEALKLATDEERR 129 (336)
Q Consensus 81 eL~ktk~eLe~~~~~E-----------~kar~~~~eL~~~Lqql~~EaE~AK~ea~~are 129 (336)
||.-+..-.+.+-+.- .+....+..|...+|.+-.|....-.....+.+
T Consensus 170 ELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e 229 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKE 229 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 155
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.19 E-value=7.1e+02 Score=27.57 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhh----hhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLD----SKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~a----aesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
+..+..-....-.-+..+-.+.+.++.. +.....|+.-+-.+|+..+++.-....-|..|..+|...+......+.
T Consensus 198 ~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~ 277 (629)
T KOG0963|consen 198 LEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI 277 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q ss_pred HHHHhh-HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 035694 95 EEVNAT-MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS-------- 165 (336)
Q Consensus 95 ~E~kar-~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS-------- 165 (336)
....+. ....-+-..+++|+.+.++.+.- +..+.+.-++.|.+++..+.+...+++-.+-=
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S----------~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYe 347 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEAS----------LVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYE 347 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q ss_pred ----HHHHHHHhh--ccccCCCCceeecHHHHHHHHHHHHHHHHHhhhHHH
Q 035694 166 ----AAEALRCIG--ISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVS 210 (336)
Q Consensus 166 ----ea~Al~~Lk--~Se~~~~~~VTLS~eEY~~Ls~rA~EaEelA~kRVa 210 (336)
+...|++|. .|+.+....=+.+..|---|.+-..--.++|.-||.
T Consensus 348 eIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~ 398 (629)
T KOG0963|consen 348 EIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVA 398 (629)
T ss_pred HHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcc
No 156
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.74 E-value=5.9e+02 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH
Q 035694 51 IDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS 88 (336)
Q Consensus 51 r~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e 88 (336)
+.+++-.+..+..++...=.+-..+.....++++.+.+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e 227 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKE 227 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 45555555555555553222223333333344444333
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.62 E-value=3.3e+02 Score=23.58 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHH
Q 035694 46 DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATD 125 (336)
Q Consensus 46 aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~ 125 (336)
.++.|.+.|-+.-.++..+++....-...=..|..||.+...+.+.+.... ..+..|...|+.+...-+.+--.-=
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~----~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK----KEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666555666666666666666555544332 4445566666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035694 126 EERRARSNLKQVLRLKRQKL 145 (336)
Q Consensus 126 ~areE~~klkeEaEqaKa~i 145 (336)
.--+++..|+.++.--|...
T Consensus 93 EK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555443
No 158
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.01 E-value=2.5e+02 Score=22.06 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~A 154 (336)
..+..|....+++..|=...+........|.+.+.+-.+.|+.-|.++=.||.+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456778888999999999999999999999999999999999999999988875
No 159
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.88 E-value=5.8e+02 Score=26.19 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhh----------------hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWL----------------DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAEL 82 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~----------------aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL 82 (336)
+.-+..|...+++-+.+|..+...+|. .+.-|.+||....+.|+.+|---+-..-.|+-|.+.+
T Consensus 181 ~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkari 260 (372)
T COG3524 181 VRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARI 260 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 445666777777777777777666553 4556777888888888888877777777788888777
Q ss_pred HhhHHHHh
Q 035694 83 DSTTKSIM 90 (336)
Q Consensus 83 ~ktk~eLe 90 (336)
+..+.+|.
T Consensus 261 eSlrkql~ 268 (372)
T COG3524 261 ESLRKQLL 268 (372)
T ss_pred HHHHHHHH
Confidence 77776654
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.67 E-value=3.7e+02 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLRLK 141 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqa 141 (336)
+..+......+.++..+...+....+..+..+..+....
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433333333444444433333
No 161
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.37 E-value=7.3e+02 Score=27.20 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 035694 190 EYHALKRRAEEEA 202 (336)
Q Consensus 190 EY~~Ls~rA~EaE 202 (336)
...+.+...++++
T Consensus 426 l~~ei~~~~~~~~ 438 (581)
T KOG0995|consen 426 LLDEISEELHEAE 438 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555443
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.05 E-value=8.3e+02 Score=27.43 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 110 LAETRQELEALKLATDEERRARSNLKQVLRLKRQKLR 146 (336)
Q Consensus 110 Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ 146 (336)
||+.-+=+.....+-+.++-|+..+.+|++.-++.+.
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444443
No 163
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.04 E-value=6.4e+02 Score=28.69 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 035694 72 NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALK 121 (336)
Q Consensus 72 sa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK 121 (336)
..+...++++|.+-..++-.....-...-+.+..|-..+|.+..|+.+|+
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rar 183 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRAR 183 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555444333333333334444444444444444444
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.90 E-value=6e+02 Score=25.72 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc--------------chhhhhhhHHHHHHh
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS--------------MSNMIVSELQAELDS 84 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~--------------~asa~V~sLe~eL~k 84 (336)
|.|...=|-=.-.+|++...|-.+|+..|+.|+..-..++.....+..... .-+..+.....+-..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 344444444555666666667777777788887666666665555542100 001112222222223
Q ss_pred hHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 85 TTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRA 164 (336)
Q Consensus 85 tk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkA 164 (336)
...++..++.+=.++++++--|...+..........- +...-.+...+-..+|.++..+..+|.-+++++-|.+.+..
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444443332222111 11111667788889999999999999999999999998875
Q ss_pred H
Q 035694 165 S 165 (336)
Q Consensus 165 S 165 (336)
-
T Consensus 162 E 162 (319)
T PF09789_consen 162 E 162 (319)
T ss_pred H
Confidence 4
No 165
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.43 E-value=2.9e+02 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhc
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRC 68 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere 68 (336)
..++|+++.|..=.....+...++..=+.|..|.+++|.++..-++|.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888887777777888888888888888888888877766654
No 166
>PRK14158 heat shock protein GrpE; Provisional
Probab=29.35 E-value=2.2e+02 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=22.9
Q ss_pred ccccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 035694 5 DKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNA 40 (336)
Q Consensus 5 ~~e~~e~~~~~~~~l~s~~~ELeeaK~~Lekak~E~ 40 (336)
|+.+++++++....+..+..+|+..+..+...++..
T Consensus 28 ~~~~~~~~~~~~~~~~~le~~l~~le~e~~el~d~~ 63 (194)
T PRK14158 28 GKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKY 63 (194)
T ss_pred CCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666666666666666665554443
No 167
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.20 E-value=6.3e+02 Score=25.79 Aligned_cols=22 Identities=5% Similarity=0.320 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 035694 103 IKELSQALAETRQELEALKLAT 124 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea 124 (336)
..++...+.++..+..+++...
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~ 259 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQK 259 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 168
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=28.85 E-value=7.9e+02 Score=27.41 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHH
Q 035694 25 ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIK 104 (336)
Q Consensus 25 ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~ 104 (336)
+|-+.|--|+-+++++ -+-|+-|..|-+-++-+|...|+-.-+-.-.|-.|+.+|.+.++++.-+.-++ ....-+
T Consensus 312 qLLetKNALNiVKNDL---IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~--~~~e~d 386 (832)
T KOG2077|consen 312 QLLETKNALNIVKNDL---IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA--KDDEDD 386 (832)
T ss_pred HHHhhhhHHHHHHHHH---HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccc
Confidence 4556666666666543 23344454444455555555444444444557778888888888766543332 123345
Q ss_pred HHHHHHHHHHH--HHHHHHHhHHHHHHHHHHH
Q 035694 105 ELSQALAETRQ--ELEALKLATDEERRARSNL 134 (336)
Q Consensus 105 eL~~~Lqql~~--EaE~AK~ea~~areE~~kl 134 (336)
+||.+.-+--. |.-+.-.+-..-++.+..|
T Consensus 387 diPmAqRkRFTRvEMaRVLMeRNqYKErLMEL 418 (832)
T KOG2077|consen 387 DIPMAQRKRFTRVEMARVLMERNQYKERLMEL 418 (832)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 56655544333 3333333333334444443
No 169
>PF15294 Leu_zip: Leucine zipper
Probab=28.62 E-value=6e+02 Score=25.29 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHh-------hc--cchhhhhhhHHHHHHhhHHHHh
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN-------RC--SMSNMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKe-------re--~~asa~V~sLe~eL~ktk~eLe 90 (336)
-..+|....+.+.++.++-...+-.-+...-.|=.++...|..++- +. ...+..++.|+..+-..+.+++
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
Confidence 3459999999999999998888888888888888888888887766 21 3345567777777777766544
No 170
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=28.40 E-value=2.3e+02 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRL 140 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEq 140 (336)
....+|...+.||....+..+....+++.+...+.+++..
T Consensus 32 s~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 32 SDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 3455667777788888888888888877777777777654
No 171
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=28.11 E-value=1.3e+02 Score=21.78 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHH
Q 035694 26 LVKTKAELKRAKDNAMQSWLDSKPLIDELER 56 (336)
Q Consensus 26 LeeaK~~Lekak~E~~~lr~aaesLr~ELek 56 (336)
|++++.+|+++++|.- +.++.||-+
T Consensus 13 L~EvrkEl~K~K~EII------eA~~~eL~r 37 (40)
T PF08776_consen 13 LEEVRKELQKVKEEII------EAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhc
Confidence 5667777777777653 335556544
No 172
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.99 E-value=6e+02 Score=25.07 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=27.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694 42 QSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK 93 (336)
Q Consensus 42 ~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~ 93 (336)
+++.++..+..++...+..+..+..-+..-+..|.--..+|+++...|.+++
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555554
No 173
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.88 E-value=8.9e+02 Score=27.09 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 035694 321 HQIKDFIVR 329 (336)
Q Consensus 321 ~~~~~~~~~ 329 (336)
+.+.+||..
T Consensus 708 ~~l~~~ld~ 716 (771)
T TIGR01069 708 DRLEKFLND 716 (771)
T ss_pred HHHHHHHHH
Confidence 333444433
No 174
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.77 E-value=4.9e+02 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHH
Q 035694 33 LKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQ 79 (336)
Q Consensus 33 Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe 79 (336)
|+++-|=...|.-...-++..|.+++..++.+........-.+..++
T Consensus 19 ~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~ 65 (219)
T TIGR02977 19 LDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLE 65 (219)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444545556666666666666666666666444433333333333
No 175
>PRK12472 hypothetical protein; Provisional
Probab=27.52 E-value=8.1e+02 Score=26.46 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 035694 51 IDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATM--MIKELSQALAETRQELEALKLATDEER 128 (336)
Q Consensus 51 r~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~--~~~eL~~~Lqql~~EaE~AK~ea~~ar 128 (336)
..|+...+..|..+. ..+.--..+|..+-..|+.++..+.+++. .-......+-++...++.|+..++...
T Consensus 217 ~~~~~~~~~~l~~~e-------~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 289 (508)
T PRK12472 217 AREAAPLKASLRKLE-------RAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKR 289 (508)
T ss_pred HHHhHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444444555554443 33344456666676677766655544432 233333444444455555555554444
Q ss_pred HHHHHHHHHH
Q 035694 129 RARSNLKQVL 138 (336)
Q Consensus 129 eE~~klkeEa 138 (336)
..+..+++.+
T Consensus 290 ~~~~~~~~a~ 299 (508)
T PRK12472 290 AAAAATKEAA 299 (508)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 176
>PRK11281 hypothetical protein; Provisional
Probab=27.52 E-value=1.1e+03 Score=27.91 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH---HHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc------chhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 24 AELVKTKAELK---RAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS------MSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 24 ~ELeeaK~~Le---kak~E~~~lr~aaesLr~ELekeK~eLa~lKere~------~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
..|+++...|+ +.+.+...+...+...-.++.....+|+++++... -.......|+..|..+...|+..+.
T Consensus 63 ~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~ 142 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQN 142 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 33334445666666666667777777777665211 1344446677777766666665544
Q ss_pred H
Q 035694 95 E 95 (336)
Q Consensus 95 ~ 95 (336)
.
T Consensus 143 ~ 143 (1113)
T PRK11281 143 D 143 (1113)
T ss_pred H
Confidence 3
No 177
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=27.48 E-value=5.5e+02 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035694 25 ELVKTKAELKRAKDN 39 (336)
Q Consensus 25 ELeeaK~~Lekak~E 39 (336)
.+..+...|..+...
T Consensus 56 ~~~~a~a~l~~a~a~ 70 (327)
T TIGR02971 56 ELDVARTQLDEAKAR 70 (327)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.22 E-value=6.9e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=16.3
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhh
Q 035694 35 RAKDNAMQSWLDSKPLIDELERLKATLASDKNR 67 (336)
Q Consensus 35 kak~E~~~lr~aaesLr~ELekeK~eLa~lKer 67 (336)
........+......++.++...+..+..+++.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444445555555555555555544443
No 179
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.09 E-value=6.5e+02 Score=25.22 Aligned_cols=92 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH----HhHHhhccchhhhhhh-------HHHHHHhhHHHHhhhHH
Q 035694 26 LVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATL----ASDKNRCSMSNMIVSE-------LQAELDSTTKSIMSKKE 94 (336)
Q Consensus 26 LeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eL----a~lKere~~asa~V~s-------Le~eL~ktk~eLe~~~~ 94 (336)
..+++.++.++.+.+......++.|..+++.++..+ ..+..........+.+ ...+|.....+|...+.
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~ 148 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQE 148 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHH
Q 035694 95 EEVNATMMIKELSQALAETRQEL 117 (336)
Q Consensus 95 ~E~kar~~~~eL~~~Lqql~~Ea 117 (336)
.-.........+...|..+....
T Consensus 149 ~l~q~~~k~~~~q~~l~~~~~~~ 171 (301)
T PF06120_consen 149 RLEQMQSKASETQATLNDLTEQR 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 180
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.01 E-value=4.8e+02 Score=23.65 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVL 138 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEa 138 (336)
..+.+....++.+.+|..............+.++..|-
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666665553
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.82 E-value=9.2e+02 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHhHHhh
Q 035694 48 KPLIDELERLKATLASDKNR 67 (336)
Q Consensus 48 esLr~ELekeK~eLa~lKer 67 (336)
..|..+.++.-.+|..++++
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~ 587 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEE 587 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 182
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.46 E-value=8.3e+02 Score=26.26 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-----------hHHHh-----------hhhhhHHHHHHHHHHHHHhHHhhccch-hhhh
Q 035694 19 LEAKTAELVKTKAELKRAKDN-----------AMQSW-----------LDSKPLIDELERLKATLASDKNRCSMS-NMIV 75 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E-----------~~~lr-----------~aaesLr~ELekeK~eLa~lKere~~a-sa~V 75 (336)
|..+..+|.++.+.|++++.+ ...++ +-.+.++.|||+++..|.......... +..+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsa 333 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSA 333 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 455666777777777777776 33333 223456677788887777775554443 3333
Q ss_pred -hhHHHHHHhh
Q 035694 76 -SELQAELDST 85 (336)
Q Consensus 76 -~sLe~eL~kt 85 (336)
..|+.=|+.|
T Consensus 334 P~aLQ~wLq~T 344 (575)
T KOG4403|consen 334 PLALQKWLQLT 344 (575)
T ss_pred cHHHHHHHHHH
Confidence 3344444444
No 183
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=26.20 E-value=5.5e+02 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 135 KQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 135 keEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
.++.+++++.+..++..+.++...++.
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~ 147 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDL 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444333
No 184
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=25.71 E-value=7.2e+02 Score=25.30 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 035694 116 ELEALKL 122 (336)
Q Consensus 116 EaE~AK~ 122 (336)
+.++++.
T Consensus 152 ~~~~a~~ 158 (352)
T COG1566 152 ELDRARA 158 (352)
T ss_pred HHHHHHH
Confidence 3333333
No 185
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=25.68 E-value=6.1e+02 Score=24.41 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 035694 24 AELVKTKAELKRAKDN 39 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E 39 (336)
..|+.+...+..+...
T Consensus 81 ~~l~~~~a~l~~~~~~ 96 (331)
T PRK03598 81 NALMQAKANVSVAQAQ 96 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555544444443
No 186
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.47 E-value=6.5e+02 Score=24.71 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=23.5
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHhH---Hhhccc-hhhhhhhHHHHHHhhHH
Q 035694 39 NAMQSWLDSKPLIDELERLKATLASD---KNRCSM-SNMIVSELQAELDSTTK 87 (336)
Q Consensus 39 E~~~lr~aaesLr~ELekeK~eLa~l---Kere~~-asa~V~sLe~eL~ktk~ 87 (336)
.+..|.--++-|...|.+-..+|.-| ++++=- -+..|.+|.-+|+..+.
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544 222222 23355666555555544
No 187
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=25.38 E-value=9.8e+02 Score=26.70 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHH
Q 035694 35 RAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETR 114 (336)
Q Consensus 35 kak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~ 114 (336)
++--|+..++..+..|+..+..++..+... +..+...+..|. +|+.++..|+++...=.++ +.-+.|...++.+-
T Consensus 67 r~~~ev~~l~~ea~~L~~~~~~v~~~~~~~---e~~t~~s~~~L~-~ld~vK~rm~~a~~~L~EA-~~w~~l~~~v~~~~ 141 (766)
T PF10191_consen 67 RVLREVDRLRQEAASLQEQMASVQEEIKAV---EQDTAQSMAQLA-ELDSVKSRMEAARETLQEA-DNWSTLSAEVDDLF 141 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 666677777777777777777777776543 344455566654 5999999998877653333 33334555554443
Q ss_pred --HHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 035694 115 --QELEALKLATDEERRARSNLKQ--VLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 115 --~EaE~AK~ea~~areE~~klke--EaEqaKa~i~taE~RL~Aa~k 157 (336)
.+...+-.....|+.-+.-+.. +.+-.+..+...+-||++.+.
T Consensus 142 ~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vs 188 (766)
T PF10191_consen 142 ESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVS 188 (766)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhh
Confidence 2344444444445544444443 455677777777777777654
No 188
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.74 E-value=8.1e+02 Score=25.53 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLR 139 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaE 139 (336)
+.++...++-...+...+.........++..+.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLS 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333333
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.60 E-value=1.1e+03 Score=27.18 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHH---H
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEV---N 98 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~---k 98 (336)
+.+++++.--.+.+-++....+-.-.+.|+.-....+-+.+.+.+....--+..++|..+++-.+-.|..+..... .
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 4566666666667777777777777777777777777777777777766666777777777766666653322221 1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLR 146 (336)
Q Consensus 99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ 146 (336)
..++..-.+..|+-+..|.......-.....++-+-.+.+++-++...
T Consensus 728 ~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 728 GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 112222233444444455554444444444444444444444444433
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.91 E-value=5.6e+02 Score=23.34 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 112 ETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154 (336)
Q Consensus 112 ql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~A 154 (336)
.+...++..+.........+.+++..+...+..+..++.+...
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555545555555555555555555555444443
No 191
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.82 E-value=2.3e+02 Score=31.31 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHh
Q 035694 18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN 66 (336)
Q Consensus 18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKe 66 (336)
+++++..||-+....-++...|+..++.-.+-|+.+|.+.+.+|.+|+-
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4566666666666666666666666666666666666666666666543
No 192
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.42 E-value=6.4e+02 Score=23.85 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH-HHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHH
Q 035694 26 LVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT-LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIK 104 (336)
Q Consensus 26 LeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~e-La~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~ 104 (336)
..+.+..++........+... ..++++.=.. ++............|..+..+.+.....|.++. ...+
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i----~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E-------~sfs 93 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKI----MEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLE-------KSFS 93 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHH-------hhHH
Confidence 344444444443333333333 3444444443 233333445566778888888888887777654 4567
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 035694 105 ELSQALAETRQELEALKLATDEERRAR----SNLKQVLRLKRQKLRTSQLALRATRIESEACRAS---AAEALRC 172 (336)
Q Consensus 105 eL~~~Lqql~~EaE~AK~ea~~areE~----~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS---ea~Al~~ 172 (336)
+|.....++..-++..+..-+.-+..+ ..+..+-..-.+--.-++..|.-|-.||+-++.+ +..||++
T Consensus 94 dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 94 DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA 168 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888888888877754444333 3444444444455567788999999999999988 4555554
No 193
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.99 E-value=83 Score=26.10 Aligned_cols=12 Identities=50% Similarity=0.454 Sum_probs=4.3
Q ss_pred HHHHHHHHHHhH
Q 035694 53 ELERLKATLASD 64 (336)
Q Consensus 53 ELekeK~eLa~l 64 (336)
+++.+..+...|
T Consensus 33 ~~~~l~~e~~~L 44 (131)
T PF05103_consen 33 ELERLQRENAEL 44 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 194
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.79 E-value=2.3e+02 Score=27.11 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhh
Q 035694 17 SDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNR 67 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKer 67 (336)
+.+.....||+.-...|+++..+...+..=++.+..|-.++..+...|+++
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
No 195
>PRK11020 hypothetical protein; Provisional
Probab=22.75 E-value=2.4e+02 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=24.2
Q ss_pred hhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 035694 75 VSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKL 122 (336)
Q Consensus 75 V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ 122 (336)
|+.|+..|+.++..+.++... -..+++..+...++.+..++...|.
T Consensus 7 iq~L~drLD~~~~Klaaa~~r--gd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASLR--GDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554332 1224455555555555555555443
No 196
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=22.72 E-value=6.7e+02 Score=23.84 Aligned_cols=117 Identities=7% Similarity=0.022 Sum_probs=63.4
Q ss_pred HhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 035694 39 NAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELE 118 (336)
Q Consensus 39 E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE 118 (336)
+.-+|+.+-..++.|++.+-..|..+.+........+..+.......+..++ ..+..+.+........++
T Consensus 55 E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e----------~~~ek~~K~~~~~~k~~~ 124 (240)
T cd07672 55 EINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIE----------LIMDAIHKQRAMQFKKTM 124 (240)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 5568888888889999988888888876655322123333333333333222 222333333333333333
Q ss_pred HHHHhHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 119 ALKLATDEER-------------------RARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 119 ~AK~ea~~ar-------------------eE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
.+|..=+..+ .++.|+..-++.++..+..+....+.++..+.-.+.-
T Consensus 125 ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~ 190 (240)
T cd07672 125 ESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIRED 190 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 3455666666666666666666666666666655544
No 197
>PRK01156 chromosome segregation protein; Provisional
Probab=22.42 E-value=1.1e+03 Score=26.19 Aligned_cols=6 Identities=17% Similarity=-0.020 Sum_probs=2.1
Q ss_pred HHHHHH
Q 035694 133 NLKQVL 138 (336)
Q Consensus 133 klkeEa 138 (336)
.+...+
T Consensus 692 ~l~~~~ 697 (895)
T PRK01156 692 DAKANR 697 (895)
T ss_pred HHHHHH
Confidence 333333
No 198
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.16 E-value=5.8e+02 Score=22.94 Aligned_cols=87 Identities=7% Similarity=0.085 Sum_probs=43.3
Q ss_pred HHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 78 LQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 78 Le~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
|+..-++...+|..+.....++.....+-...|.++..|+...-..+... ..+..+++ ...+-..++..+..|..
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~---a~~~~~ea--~~eA~~ea~r~~~~A~~ 107 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEV---TKKIIQEK--TKEIEEFLEHKKSDAIQ 107 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44444455555555444445555566666666666666666544333322 11111111 11222335666667777
Q ss_pred HHHHHHHHHHHH
Q 035694 158 ESEACRASAAEA 169 (336)
Q Consensus 158 E~EAAkASea~A 169 (336)
+|+..+..+...
T Consensus 108 ~Ie~Ek~~Al~e 119 (154)
T PRK06568 108 LIQNQKSTASKE 119 (154)
T ss_pred HHHHHHHHHHHH
Confidence 777766654333
No 199
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.12 E-value=6.3e+02 Score=23.36 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhH
Q 035694 32 ELKRAKDNAMQSWLDSKPLIDELERLKATLASD 64 (336)
Q Consensus 32 ~Lekak~E~~~lr~aaesLr~ELekeK~eLa~l 64 (336)
.|.+++..+..++..-..|..++......+...
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 200
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.96 E-value=7.3e+02 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=15.7
Q ss_pred hhhhhccCCCCC--cchhhhhhhhhhHHHHH
Q 035694 297 QMRRSKSNNNNG--NSLVKKRRTSIFHQIKD 325 (336)
Q Consensus 297 ~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~ 325 (336)
+|+...+-.+|+ ..---+++-+|||..|.
T Consensus 531 ~m~~~~~~s~n~~~S~~~~~l~~g~~P~l~r 561 (575)
T KOG4403|consen 531 DMQSIVSGSTNGSGSVAALKLRKGIFPKLFR 561 (575)
T ss_pred ccccccccCCCCCCCchhhhhhhccChHHHH
Confidence 444444333333 33344667788888764
No 201
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.81 E-value=6.8e+02 Score=27.87 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHH-HHHHHHHHHHHHHHHhHHH
Q 035694 48 KPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELS-QALAETRQELEALKLATDE 126 (336)
Q Consensus 48 esLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~-~~Lqql~~EaE~AK~ea~~ 126 (336)
.+|+..|..+.-.|..|+.+...--..+.+|-.++++.-.+|.--..--..--.+..+|+ ..|++++..+..++.+...
T Consensus 99 ~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~ 178 (660)
T KOG4302|consen 99 GTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSD 178 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777776666666666666666666666655433000000011233344 4555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 035694 127 ERRARSNLKQVL 138 (336)
Q Consensus 127 areE~~klkeEa 138 (336)
-.+++...+.++
T Consensus 179 Rlekv~~~~~~I 190 (660)
T KOG4302|consen 179 RLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 202
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=75 Score=25.41 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=14.1
Q ss_pred CCceeecHHHHHHHHH
Q 035694 181 AITVQMTQEEYHALKR 196 (336)
Q Consensus 181 ~~~VTLS~eEY~~Ls~ 196 (336)
+-+||||.+||..|..
T Consensus 52 GKGiTLt~eE~~~l~d 67 (72)
T COG4443 52 GKGITLTNEEFKALKD 67 (72)
T ss_pred cCceeecHHHHHHHHH
Confidence 6789999999999864
No 203
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.38 E-value=8.3e+02 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhh
Q 035694 47 SKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 47 aesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~ 91 (336)
...|+.+|.....+++.+..+-+...-.|..|..+|...+..|..
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999988887753
No 204
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.25 E-value=4.9e+02 Score=21.69 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 73 MIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLAL 152 (336)
Q Consensus 73 a~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL 152 (336)
..+.++..+...+...|..+...--..+..-.++...|+.+..+...-.. -...+.++..+..+....++...++.--+
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~ 81 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVF 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555555566666666666666555444 34455666667777777777666666555
Q ss_pred HHH
Q 035694 153 RAT 155 (336)
Q Consensus 153 ~Aa 155 (336)
++.
T Consensus 82 q~l 84 (106)
T PF05837_consen 82 QAL 84 (106)
T ss_pred HHH
Confidence 543
No 205
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.17 E-value=8.4e+02 Score=24.38 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=17.8
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHhHHhhccc
Q 035694 40 AMQSWLDSKPLIDELERLKATLASDKNRCSM 70 (336)
Q Consensus 40 ~~~lr~aaesLr~ELekeK~eLa~lKere~~ 70 (336)
..-|..=...++.+|......|...+++.+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444556666666666666666665544
No 206
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.03 E-value=7.2e+02 Score=23.60 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHh
Q 035694 47 SKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIM 90 (336)
Q Consensus 47 aesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe 90 (336)
...+..+|...+..+..++.........+..++.++...+..++
T Consensus 75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (334)
T TIGR00998 75 PTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLE 118 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444444444444444443333
No 207
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=20.91 E-value=7.5e+02 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035694 137 VLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 137 EaEqaKa~i~taE~RL~Aa~ 156 (336)
+.+++++.+..++..+.++.
T Consensus 142 ~~d~a~~~~~~a~a~~~~a~ 161 (397)
T PRK15030 142 EYDQALADAQQANAAVTAAK 161 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.83 E-value=1e+03 Score=25.33 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhh---------hhHHHHHHhhHHHHhh
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIV---------SELQAELDSTTKSIMS 91 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V---------~sLe~eL~ktk~eLe~ 91 (336)
.+..+|++....|..+.++...++..+..|+.+-...+..|..++......--.| .+...-+..+...|..
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~ 455 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEE 455 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035694 92 KKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVL 138 (336)
Q Consensus 92 ~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEa 138 (336)
+...=.+.+-.|..+...|..+....+.+...+...-..+.-+..-+
T Consensus 456 l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~i 502 (560)
T PF06160_consen 456 LSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLI 502 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.64 E-value=7.1e+02 Score=23.36 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHH
Q 035694 25 ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIK 104 (336)
Q Consensus 25 ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~ 104 (336)
-++.+................-++.+..|-.....++..+......-...+..|+..+.....+|..+...-......-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEA 119 (336)
Q Consensus 105 eL~~~Lqql~~EaE~ 119 (336)
+|.-.|.++-..++.
T Consensus 102 ~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 210
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=20.52 E-value=7.2e+02 Score=23.40 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=65.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHhhccc-hhhhhhhHHHHHHhhHHHHhhhHHHHHH----hhHhHHHHHHHHHHHHH
Q 035694 41 MQSWLDSKPLIDELERLKATLASDKNRCSM-SNMIVSELQAELDSTTKSIMSKKEEEVN----ATMMIKELSQALAETRQ 115 (336)
Q Consensus 41 ~~lr~aaesLr~ELekeK~eLa~lKere~~-asa~V~sLe~eL~ktk~eLe~~~~~E~k----ar~~~~eL~~~Lqql~~ 115 (336)
..|..+...++.|++.+-..|..+-+.... ..-.|..+..++.+.+..++....+.-+ ....+......+.+++.
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888877666553 2235555555555554444432222211 11222334444455555
Q ss_pred HHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 116 ELEALKLATD--------------------EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 116 EaE~AK~ea~--------------------~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
|.|.|..... ....+..++..-+..+..++..++.....+...++.++.-
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~ 207 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLE 207 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543221 1223344555555555555555555555555555554444
No 211
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.51 E-value=4.3e+02 Score=20.79 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHH
Q 035694 26 LVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELD 83 (336)
Q Consensus 26 LeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ 83 (336)
+.+...+-++...-...++..+..||..+...-..+..++.+.......+.+|+..|.
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555556666666666666666666666555555555555555443
No 212
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.31 E-value=4.9e+02 Score=21.38 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 105 eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
=|...+..+...-..+..++..++.-...+.++.++-+..-..=+.||++-+-
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666556666666666666667778888888888888888877654
No 213
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=1.2e+03 Score=25.80 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh-
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT- 100 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar- 100 (336)
-++|+.+.+.-|+-+..+...-..+.-.|+++.-.+++....+.-+...-+|.+.+-+.+..+....|.-++..+-.++
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~ 415 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 3344444444444333333333333333333333344433334444444455555555555555555444444443333
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035694 101 -MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLR 139 (336)
Q Consensus 101 -~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaE 139 (336)
-.++++.+-|+....+.+..-..+++.-.++-.+-.+.+
T Consensus 416 ~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 416 NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555544444444444444333333333333
No 214
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.07 E-value=8.3e+02 Score=23.94 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHhhHHHHhhh
Q 035694 73 MIVSELQAELDSTTKSIMSK 92 (336)
Q Consensus 73 a~V~sLe~eL~ktk~eLe~~ 92 (336)
..++.|+.+|...+.+|..+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665543
Done!