Query 035694
Match_columns 336
No_of_seqs 96 out of 98
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.2 0.033 1.1E-06 51.2 18.7 116 50-165 30-147 (256)
2 3na7_A HP0958; flagellar bioge 96.7 0.28 9.6E-06 45.0 20.3 15 182-196 204-218 (256)
3 2efr_A General control protein 94.1 2.7 9.3E-05 36.7 19.4 108 53-160 22-129 (155)
4 1i84_S Smooth muscle myosin he 93.9 0.16 5.5E-06 55.8 9.4 76 19-94 859-934 (1184)
5 3u1c_A Tropomyosin alpha-1 cha 93.9 1.1 3.9E-05 36.0 12.1 99 101-203 2-100 (101)
6 3oja_B Anopheles plasmodium-re 93.4 1.9 6.5E-05 42.7 15.4 44 118-161 526-569 (597)
7 3u59_A Tropomyosin beta chain; 92.1 2.5 8.7E-05 33.8 11.7 97 102-202 3-99 (101)
8 1i84_S Smooth muscle myosin he 91.9 0.35 1.2E-05 53.2 8.4 18 25-42 858-875 (1184)
9 3oja_B Anopheles plasmodium-re 88.3 7.9 0.00027 38.2 14.0 48 103-150 532-579 (597)
10 3u1c_A Tropomyosin alpha-1 cha 86.6 11 0.00037 30.2 13.1 51 19-69 4-54 (101)
11 3vkg_A Dynein heavy chain, cyt 86.4 29 0.00098 42.8 19.4 45 19-63 1908-1952(3245)
12 1ic2_A Tropomyosin alpha chain 86.4 9.4 0.00032 29.2 10.5 71 104-174 2-72 (81)
13 3vkg_A Dynein heavy chain, cyt 84.7 86 0.0029 38.8 23.3 168 41-219 1902-2082(3245)
14 3u59_A Tropomyosin beta chain; 81.2 19 0.00064 28.6 13.1 51 19-69 4-54 (101)
15 2eqb_B RAB guanine nucleotide 80.9 21 0.00071 29.0 12.3 92 49-147 2-94 (97)
16 3hrn_A Transient receptor pote 80.3 6.7 0.00023 29.8 7.1 48 186-244 3-52 (64)
17 3i00_A HIP-I, huntingtin-inter 79.9 10 0.00034 31.7 8.8 68 73-143 15-82 (120)
18 2v71_A Nuclear distribution pr 75.1 46 0.0016 29.8 19.3 133 19-157 12-144 (189)
19 2dfs_A Myosin-5A; myosin-V, in 72.8 1.1E+02 0.0039 33.6 17.1 19 73-91 984-1002(1080)
20 2dfs_A Myosin-5A; myosin-V, in 72.1 36 0.0012 37.5 13.0 21 105-125 988-1008(1080)
21 3o0z_A RHO-associated protein 71.3 54 0.0019 28.9 20.1 120 21-140 10-129 (168)
22 2ocy_A RAB guanine nucleotide 71.1 48 0.0016 28.8 11.1 80 74-164 14-93 (154)
23 3tnu_B Keratin, type II cytosk 63.4 61 0.0021 26.5 10.6 18 73-90 82-99 (129)
24 3i00_A HIP-I, huntingtin-inter 61.3 45 0.0015 27.7 8.7 22 19-40 17-38 (120)
25 3mq7_A Bone marrow stromal ant 61.2 73 0.0025 26.8 11.6 40 22-61 30-69 (121)
26 3hnw_A Uncharacterized protein 60.0 49 0.0017 27.9 8.9 105 14-118 25-134 (138)
27 3tnu_A Keratin, type I cytoske 58.0 77 0.0026 26.0 9.6 30 30-59 30-59 (131)
28 1jcd_A Major outer membrane li 57.7 51 0.0017 23.8 7.7 38 103-140 6-43 (52)
29 2v71_A Nuclear distribution pr 57.5 1.1E+02 0.0036 27.4 15.5 100 37-153 9-112 (189)
30 3mq9_A Bone marrow stromal ant 56.3 1.4E+02 0.0047 28.6 12.6 47 42-88 394-440 (471)
31 3hnw_A Uncharacterized protein 55.6 93 0.0032 26.2 12.1 11 78-88 66-76 (138)
32 2e7s_A RAB guanine nucleotide 52.4 16 0.00055 31.3 4.6 80 75-165 3-82 (135)
33 2efr_A General control protein 48.3 1.3E+02 0.0046 25.9 15.7 116 29-151 26-141 (155)
34 3te3_A Polycystic kidney disea 46.5 36 0.0012 23.4 4.7 30 186-219 4-33 (39)
35 1wt6_A Myotonin-protein kinase 44.6 68 0.0023 25.2 6.7 16 50-65 29-44 (81)
36 4gif_A Polycystic kidney disea 44.6 38 0.0013 23.9 4.7 30 186-219 4-33 (45)
37 2jee_A YIIU; FTSZ, septum, coi 44.2 92 0.0031 24.4 7.4 46 22-67 25-70 (81)
38 3mq9_A Bone marrow stromal ant 43.9 94 0.0032 29.8 9.1 39 22-60 402-440 (471)
39 2e7s_A RAB guanine nucleotide 43.7 1.3E+02 0.0046 25.5 8.9 97 52-155 25-122 (135)
40 1jcd_A Major outer membrane li 42.9 92 0.0031 22.4 7.5 39 101-139 11-49 (52)
41 4h22_A Leucine-rich repeat fli 41.5 1.4E+02 0.005 24.3 9.1 79 64-142 7-85 (103)
42 2v4h_A NF-kappa-B essential mo 40.4 1.6E+02 0.0053 24.4 10.3 79 24-113 24-102 (110)
43 3o0z_A RHO-associated protein 38.5 2.1E+02 0.007 25.2 15.4 36 139-174 86-121 (168)
44 2q6q_A Spindle POLE BODY compo 37.7 78 0.0027 24.4 5.8 56 30-85 9-64 (74)
45 2jee_A YIIU; FTSZ, septum, coi 36.6 1.5E+02 0.0052 23.2 11.1 55 105-159 24-78 (81)
46 2b9c_A Striated-muscle alpha t 34.9 2.1E+02 0.0072 24.3 12.7 62 100-161 51-112 (147)
47 1use_A VAsp, vasodilator-stimu 34.8 48 0.0016 23.5 3.9 34 16-55 6-40 (45)
48 2f1m_A Acriflavine resistance 33.3 2.5E+02 0.0084 24.6 10.4 20 137-156 99-118 (277)
49 4dk0_A Putative MACA; alpha-ha 33.1 1.3E+02 0.0044 27.5 7.9 18 24-41 70-87 (369)
50 2pms_C Pneumococcal surface pr 32.5 2.2E+02 0.0077 23.9 8.9 66 78-147 49-121 (125)
51 2fxo_A Myosin heavy chain, car 31.6 2.1E+02 0.0072 23.3 15.4 41 108-148 83-123 (129)
52 2b5u_A Colicin E3; high resolu 31.4 4.5E+02 0.015 27.1 12.4 26 205-230 400-425 (551)
53 3a7p_A Autophagy protein 16; c 30.9 2.6E+02 0.009 24.2 11.3 52 44-95 67-118 (152)
54 3tnu_B Keratin, type II cytosk 30.2 2.2E+02 0.0076 23.1 12.5 30 31-60 29-58 (129)
55 2eqb_B RAB guanine nucleotide 29.5 2.2E+02 0.0076 22.9 8.3 55 111-165 8-62 (97)
56 1ic2_A Tropomyosin alpha chain 29.3 1.8E+02 0.0062 21.9 11.1 34 120-153 39-72 (81)
57 3oja_A Leucine-rich immune mol 28.8 3.9E+02 0.013 25.5 14.1 53 104-156 424-476 (487)
58 1x79_B RAB GTPase binding effe 28.7 2.5E+02 0.0084 23.2 10.7 54 64-120 36-89 (112)
59 3ni0_A Bone marrow stromal ant 28.3 2.4E+02 0.0081 22.9 9.2 63 22-91 23-85 (99)
60 3q8t_A Beclin-1; autophagy, AT 26.1 2.4E+02 0.0082 22.2 12.5 32 103-134 62-93 (96)
61 2b5u_A Colicin E3; high resolu 26.0 5.6E+02 0.019 26.4 19.3 111 43-160 319-441 (551)
62 4gkw_A Spindle assembly abnorm 25.8 3.2E+02 0.011 23.5 18.5 129 17-145 18-156 (167)
63 3iv1_A Tumor susceptibility ge 25.5 2.4E+02 0.0081 21.9 9.1 53 79-131 17-69 (78)
64 4e61_A Protein BIM1; EB1-like 25.5 1.1E+02 0.0039 25.0 5.3 35 19-53 6-40 (106)
65 3fpp_A Macrolide-specific effl 25.3 1.7E+02 0.0057 26.5 7.1 20 141-160 119-138 (341)
66 3fpp_A Macrolide-specific effl 25.1 2.4E+02 0.0082 25.4 8.1 34 24-57 69-102 (341)
67 3mq7_A Bone marrow stromal ant 23.7 3.2E+02 0.011 22.8 10.1 74 49-125 29-102 (121)
68 2w83_C C-JUN-amino-terminal ki 23.6 1.9E+02 0.0064 22.5 5.9 58 24-84 19-76 (77)
69 2ocy_A RAB guanine nucleotide 23.5 3.6E+02 0.012 23.3 16.9 82 78-159 56-138 (154)
70 2i1j_A Moesin; FERM, coiled-co 22.3 66 0.0023 32.8 4.1 115 50-164 340-454 (575)
71 3ghg_A Fibrinogen alpha chain; 22.1 5.8E+02 0.02 26.4 10.8 96 49-147 61-156 (562)
72 3lay_A Zinc resistance-associa 21.7 3.1E+02 0.011 23.9 7.8 51 42-92 82-132 (175)
73 1wt6_A Myotonin-protein kinase 20.9 3.1E+02 0.01 21.5 7.7 50 76-125 27-76 (81)
74 2yy0_A C-MYC-binding protein; 20.8 78 0.0027 22.6 3.1 30 52-81 19-48 (53)
75 3bas_A Myosin heavy chain, str 20.4 3E+02 0.01 21.2 9.4 19 19-37 16-34 (89)
76 2xnx_M M protein, M1-BC1; cell 20.3 3.6E+02 0.012 23.2 7.7 11 53-63 37-47 (146)
77 2f1m_A Acriflavine resistance 20.0 2.8E+02 0.0096 24.2 7.3 13 24-36 60-72 (277)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.19 E-value=0.033 Score=51.16 Aligned_cols=116 Identities=9% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHH--HHHHHHHHHHHHHHHHhHHHH
Q 035694 50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKEL--SQALAETRQELEALKLATDEE 127 (336)
Q Consensus 50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL--~~~Lqql~~EaE~AK~ea~~a 127 (336)
|..+|..+...++.++.+.......+..++.++.+...+|..+...-.+.+..+... ++.++.+..|.+.++......
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443333333221 345555556666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 128 RRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 128 reE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
..++..+...++..+..+..++..+.....++...++.
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655666555555555555555555555555444444
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.69 E-value=0.28 Score=44.97 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=11.9
Q ss_pred CceeecHHHHHHHHH
Q 035694 182 ITVQMTQEEYHALKR 196 (336)
Q Consensus 182 ~~VTLS~eEY~~Ls~ 196 (336)
-.++||.-.|..+..
T Consensus 204 C~~~lppq~~~~i~~ 218 (256)
T 3na7_A 204 CFIRLNDKIYTEVLT 218 (256)
T ss_dssp TCCBCCHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHC
Confidence 358999999988764
No 3
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.13 E-value=2.7 Score=36.68 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035694 53 ELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARS 132 (336)
Q Consensus 53 ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~ 132 (336)
|..++-..|.+..+|...+.+.|..|+.+|..+...|.++...+.++-.........|..|+..+..|-.-++.+...+.
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~ 101 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447788889999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 133 NLKQVLRLKRQKLRTSQLALRATRIESE 160 (336)
Q Consensus 133 klkeEaEqaKa~i~taE~RL~Aa~kE~E 160 (336)
+|..+++...-.+.....+...+..+++
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.92 E-value=0.16 Score=55.84 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE 94 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~ 94 (336)
+.....+|.+.+.+|.++.+....+......|..++...+..+...+.........+..|..++......+..+..
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888877777777777777777777766666665555544555555555555555444444433
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.87 E-value=1.1 Score=36.04 Aligned_cols=99 Identities=9% Similarity=0.098 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDG 180 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~ 180 (336)
+.|.-|...|+.|..+.+.|.-.++.....+..+.+...+....|..+.-|++.+--+++-+...-..|...|...+..
T Consensus 2 ~~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~- 80 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN- 80 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3577889999999999999999999999999999999999999999999999999999998887766676666644321
Q ss_pred CCceeecHHHHHHHHHHHHHHHH
Q 035694 181 AITVQMTQEEYHALKRRAEEEAS 203 (336)
Q Consensus 181 ~~~VTLS~eEY~~Ls~rA~EaEe 203 (336)
.+-.-.+-.+|.||++-.|+
T Consensus 81 ---~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 81 ---AAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHcc
Confidence 23334567788888876653
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.44 E-value=1.9 Score=42.70 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 118 EALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 118 E~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
...+......+.+...++.+.+..+..+.....++....+|...
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444333
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.13 E-value=2.5 Score=33.75 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 035694 102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGA 181 (336)
Q Consensus 102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~ 181 (336)
.|.-|...|+-|..+.+.|--.++.....+..+.....+....|..+.-+++....+++-+......+...|...+.
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek--- 79 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK--- 79 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 47778899999999999999999999999999999999999999999999999999999887776666666654331
Q ss_pred CceeecHHHHHHHHHHHHHHH
Q 035694 182 ITVQMTQEEYHALKRRAEEEA 202 (336)
Q Consensus 182 ~~VTLS~eEY~~Ls~rA~EaE 202 (336)
..+-+-.|..+|.||++-.|
T Consensus 80 -~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 80 -KATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHc
Confidence 12334456778888887654
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.93 E-value=0.35 Score=53.24 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 035694 25 ELVKTKAELKRAKDNAMQ 42 (336)
Q Consensus 25 ELeeaK~~Lekak~E~~~ 42 (336)
|+.+.+..|.........
T Consensus 858 El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.26 E-value=7.9 Score=38.23 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQL 150 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~ 150 (336)
..+....++++..|.++.+...+.++..+..+++|....++.+...+.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555666666666666555555555443
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.63 E-value=11 Score=30.18 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS 69 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~ 69 (336)
+..+++-+...|.+.+.+.+.+-.+..-+..+.....+.-.++..|..+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777776677777666654
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.39 E-value=29 Score=42.76 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHh
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLAS 63 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~ 63 (336)
+...+.||...+.-|+.-=+-...-...|+.|+.+|...+..|..
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~ 1952 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333322222222233334444444444444443
No 12
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.36 E-value=9.4 Score=29.23 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
..|...|+.+..+.+.|.-.+..+...+..+.....+....|..+.-+++..--+++-+...-..|...|.
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888888888888888888888888887777666665554
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.70 E-value=86 Score=38.77 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 035694 41 MQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120 (336)
Q Consensus 41 ~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~A 120 (336)
..+......=+.||...+.-+..==++...+...|..|+.+|..-+-.|+... .++..++..|. .-+.+++.-
T Consensus 1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~---~ea~~~l~~i~----~~~~~ae~~ 1974 (3245)
T 3vkg_A 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN---EQANQKLKQMV----QDQQAAEIK 1974 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHH
Confidence 34444445555666666665555567778899999999999999888887533 23344444444 334455554
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeecHHH
Q 035694 121 KLATDEERRARSNLKQVLRLKRQK----LRTSQ------LALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEE 190 (336)
Q Consensus 121 K~ea~~areE~~klkeEaEqaKa~----i~taE------~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~~~VTLS~eE 190 (336)
+..+...+.++.+...++...+.. ++.|+ .+|..+..++.++.+--..+-+.|+.-+ ..|.--..+
T Consensus 1975 k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le----~~l~~L~~~ 2050 (3245)
T 3vkg_A 1975 QKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE----KSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 444444444433333333332222 12221 2233333333333222111111222111 234455677
Q ss_pred HHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 035694 191 YHALKRRAEEEASL---AEWRVSVSMEQREGV 219 (336)
Q Consensus 191 Y~~Ls~rA~EaEel---A~kRVaaA~aqVeaA 219 (336)
|..+....+.-+.. ...|+..|..-|...
T Consensus 2051 ~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2051 YATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87777666554433 445666666655554
No 14
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.23 E-value=19 Score=28.61 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS 69 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~ 69 (336)
+..+++-+...|.+.+.+-+.+-.+..-+..+.....+.-.++..|+.+..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677777777777777777777777666666666666666666666544
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.95 E-value=21 Score=28.99 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHhHHHH
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQ-ELEALKLATDEE 127 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~-EaE~AK~ea~~a 127 (336)
||+.+|+..+..+..|.......+..+..|..+|... +..-..+......|...|..|+. =.++|..+...+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE-------~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKE-------NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555544433333333333333322 22222333344445555555543 346677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035694 128 RRARSNLKQVLRLKRQKLRT 147 (336)
Q Consensus 128 reE~~klkeEaEqaKa~i~t 147 (336)
+.+...+....++-++.|..
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 76666666666665555543
No 16
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=80.32 E-value=6.7 Score=29.75 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=36.0
Q ss_pred ecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhhhhhh
Q 035694 186 MTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR--RRSRMSVK 244 (336)
Q Consensus 186 LS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke--~~~~~~~~ 244 (336)
+|.+||+-|++|+-.-|-. |..-+.||++ ++.+|+...+- .||.+++|
T Consensus 3 VS~EEF~~L~rRVlqLE~s----l~gI~SqIDa-------V~~KL~~~Er~k~~~re~m~k 52 (64)
T 3hrn_A 3 VSYEEFQVLVRRVDRMEHS----IGSIVSKIDA-------VIVKLEIMERAKLKRREVLGR 52 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence 6899999999999877654 6677889988 77777777665 24445533
No 17
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.85 E-value=10 Score=31.70 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=43.7
Q ss_pred hhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035694 73 MIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQ 143 (336)
Q Consensus 73 a~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa 143 (336)
..|-.|.-+++..+.+|+.+.. +++..+..|...+-+|..|.+..+.....+..+..-++.+.+..+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555532 3466777777777777777777777777777777777766665433
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.11 E-value=46 Score=29.80 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVN 98 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~k 98 (336)
++--+..+.+.+..+.-+..+...|..++-.|-.||+. +|..+..+...-...+..|..+++..+.++...+..
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e--- 85 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ--- 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44455667777888888889999999999988888886 466666666655666666666666666555443322
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI 157 (336)
Q Consensus 99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k 157 (336)
.-..++.|...|.++...-+..+.-....-..-.-+......+-..+..++.+|-.|+.
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22345566666666666666666666555555566666677777788888888876653
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.85 E-value=1.1e+02 Score=33.61 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHhhHHHHhh
Q 035694 73 MIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 73 a~V~sLe~eL~ktk~eLe~ 91 (336)
..|.+|+.++...+.+++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.09 E-value=36 Score=37.47 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 035694 105 ELSQALAETRQELEALKLATD 125 (336)
Q Consensus 105 eL~~~Lqql~~EaE~AK~ea~ 125 (336)
.|...++.+..+.+.+..+-+
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~ 1008 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKK 1008 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=71.35 E-value=54 Score=28.93 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh
Q 035694 21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT 100 (336)
Q Consensus 21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar 100 (336)
...+.|+++..-|.-=.+.+..++-...-+..-+...-..+..|+.+.+.....=..|+-++-.....|..-+..-....
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888887777777788887777777777777777778888877777777777777777777776555555666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRL 140 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEq 140 (336)
+.+.+|.-.++.|..|+++.+.-...+..+.+.|-+.+-.
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888889999988888777777777766665443
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.07 E-value=48 Score=28.83 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=38.9
Q ss_pred hhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 74 IVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 74 ~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~ 153 (336)
-.+.|++.|..++.+|+.....- ..|+.+..+...+...-..-..+...+..++...++.=..+|..+.
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri-----------~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAI-----------ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888665432 1122222222222222223334444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 035694 154 ATRIESEACRA 164 (336)
Q Consensus 154 Aa~kE~EAAkA 164 (336)
..-.|+|..-|
T Consensus 83 ~ie~ElEeLTa 93 (154)
T 2ocy_A 83 KLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.40 E-value=61 Score=26.55 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHhhHHHHh
Q 035694 73 MIVSELQAELDSTTKSIM 90 (336)
Q Consensus 73 a~V~sLe~eL~ktk~eLe 90 (336)
..|..|+.+|..++.+++
T Consensus 82 ~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 82 NKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 345555555555555544
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.30 E-value=45 Score=27.72 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 035694 19 LEAKTAELVKTKAELKRAKDNA 40 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~ 40 (336)
......|++..+.+|++++.|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655544
No 25
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.20 E-value=73 Score=26.75 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATL 61 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eL 61 (336)
+..+|-.+...|..+...+..-.-.|+.|+.-|+++++--
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999988765
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.01 E-value=49 Score=27.93 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=54.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH--H---HHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH
Q 035694 14 RNTSDLEAKTAELVKTKAELKRA--K---DNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS 88 (336)
Q Consensus 14 ~~~~~l~s~~~ELeeaK~~Leka--k---~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e 88 (336)
++..+|..+-.-|++-=.+|... . +.....=.++--+-+||-+.+.....|.+....-.-.+.+|..+|..+..+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444321 1 112222233344667777777777777666555555566666666666655
Q ss_pred HhhhHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 035694 89 IMSKKEEEVNATMMIKELSQALAETRQELE 118 (336)
Q Consensus 89 Le~~~~~E~kar~~~~eL~~~Lqql~~EaE 118 (336)
++.+...-.+.+.....|...+.++..+.+
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444445555555555544443
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.00 E-value=77 Score=26.05 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Q 035694 30 KAELKRAKDNAMQSWLDSKPLIDELERLKA 59 (336)
Q Consensus 30 K~~Lekak~E~~~lr~aaesLr~ELekeK~ 59 (336)
...|..++.|+..++..+.+|..||+.++.
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555666666666666555544
No 28
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=57.75 E-value=51 Score=23.80 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLRL 140 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEq 140 (336)
+..|...+++|....+++.......+.++..++.|+.-
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444444444444433
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.49 E-value=1.1e+02 Score=27.44 Aligned_cols=100 Identities=20% Similarity=0.141 Sum_probs=61.3
Q ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHH
Q 035694 37 KDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQE 116 (336)
Q Consensus 37 k~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~E 116 (336)
.+++...+.-+..+...+..++.+|...++-- ..|+.+|...=.. +.....+|...+.++..|
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesS-------rELE~ELE~eL~~----------~Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGS-------RELEAELEAQLVQ----------AEQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 34445555566666777777777777665422 3344444433211 124455677778888888
Q ss_pred HHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 035694 117 LEALKLATDEERRA----RSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 117 aE~AK~ea~~areE----~~klkeEaEqaKa~i~taE~RL~ 153 (336)
.+..|......+.+ ...+..++...+....++..+|+
T Consensus 72 ~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 72 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777 66666666666665555555443
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.34 E-value=1.4e+02 Score=28.58 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH
Q 035694 42 QSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS 88 (336)
Q Consensus 42 ~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e 88 (336)
..+....-|+..|...+..+..++.+-+...-+|--|.+-|++-.+.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888888887777765544
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.61 E-value=93 Score=26.19 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=4.1
Q ss_pred HHHHHHhhHHH
Q 035694 78 LQAELDSTTKS 88 (336)
Q Consensus 78 Le~eL~ktk~e 88 (336)
+=.+|.+.+.+
T Consensus 66 iadEl~k~~~~ 76 (138)
T 3hnw_A 66 IADDYFKAKKM 76 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.39 E-value=16 Score=31.26 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=45.4
Q ss_pred hhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 75 VSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154 (336)
Q Consensus 75 V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~A 154 (336)
+++|+.+|..++..|.+..... ..+..+..+...+...-.....+...+..++...++.-.++|..+..
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~-----------~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ 71 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAI-----------ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADK 71 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888766553 22223333333333333344455556666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 035694 155 TRIESEACRAS 165 (336)
Q Consensus 155 a~kE~EAAkAS 165 (336)
.-.|+|..-||
T Consensus 72 ie~ElE~LTas 82 (135)
T 2e7s_A 72 LNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 33
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.28 E-value=1.3e+02 Score=25.91 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHH
Q 035694 29 TKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQ 108 (336)
Q Consensus 29 aK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~ 108 (336)
+-.+|+++-+-+-..-.-+..|-.+|..+-..|-.|.-.+..++-....++.+|...+..|..+-.+..-+.-.+..|..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566677777777777777777777777777777777777776655433333333333444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 109 ALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLA 151 (336)
Q Consensus 109 ~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~R 151 (336)
.|+.+-.++ ...+.....+.+++++|=..+..+...
T Consensus 106 ~id~lEd~L-------~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 106 SIDDLEDEL-------YAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444444444 444555556666666666666555433
No 34
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=46.45 E-value=36 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=23.0
Q ss_pred ecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035694 186 MTQEEYHALKRRAEEEASLAEWRVSVSMEQREGV 219 (336)
Q Consensus 186 LS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaA 219 (336)
+|.+||+-|++|+..-|-. |..-+.||+++
T Consensus 4 Vs~eeF~~L~rRVlqlE~~----l~gI~S~idav 33 (39)
T 3te3_A 4 VSGEEFYMLTRRVLQLETV----LEGVVSQIDAV 33 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 6899999999999877653 45566677654
No 35
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.57 E-value=68 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhHH
Q 035694 50 LIDELERLKATLASDK 65 (336)
Q Consensus 50 Lr~ELekeK~eLa~lK 65 (336)
+..||.+++..+-.+.
T Consensus 29 i~EELs~vr~~ni~~e 44 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFA 44 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555444443
No 36
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=44.57 E-value=38 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=23.8
Q ss_pred ecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035694 186 MTQEEYHALKRRAEEEASLAEWRVSVSMEQREGV 219 (336)
Q Consensus 186 LS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaA 219 (336)
+|.+||+-|++|+-.-|-. |..-+.+|+++
T Consensus 4 Vs~eeF~~L~rRVlqlE~~----l~gI~S~idav 33 (45)
T 4gif_A 4 VSGEEFYMLTRRVLQLETV----LEGVVSQIDAV 33 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 6899999999999877653 55667777765
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.22 E-value=92 Score=24.43 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhh
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNR 67 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKer 67 (336)
..+|+++.|..-.....+...++...+.|..|.++++.++..-+.|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666677777777777666665554
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.90 E-value=94 Score=29.78 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~e 60 (336)
+...|++++.++..+...++.-...|..|..-|++.++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999988765
No 39
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.69 E-value=1.3e+02 Score=25.53 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHhHHHHHHH
Q 035694 52 DELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQ-ELEALKLATDEERRA 130 (336)
Q Consensus 52 ~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~-EaE~AK~ea~~areE 130 (336)
.+++.++..+..+..... ....++.+...+|.--+.....+......|...|..|+. =.++|..+...++.+
T Consensus 25 ~~le~l~~~l~~l~~~l~-------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~ 97 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELS-------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARME 97 (135)
T ss_dssp HHHHHHHHHHHHHHHHTT-------THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554332 333333333333332222223333444445566666653 357777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 131 RSNLKQVLRLKRQKLRTSQLALRAT 155 (336)
Q Consensus 131 ~~klkeEaEqaKa~i~taE~RL~Aa 155 (336)
...+....++-+..+...+..|..-
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766655443
No 40
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.87 E-value=92 Score=22.43 Aligned_cols=39 Identities=5% Similarity=0.034 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035694 101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLR 139 (336)
Q Consensus 101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaE 139 (336)
..+..|...+++|+.+...++.....+++|+..+-+.++
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556667777777777777777777777777766654
No 41
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.47 E-value=1.4e+02 Score=24.32 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=48.1
Q ss_pred HHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035694 64 DKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR 142 (336)
Q Consensus 64 lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK 142 (336)
+.++-..|=++.+.|--+=..-...+.++.+.=..-.+.+..+.+.+...+++.+..|.....-+.+...++..+.++-
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555544555667777777777788888888877777777777777666543
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.42 E-value=1.6e+02 Score=24.40 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI 103 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~ 103 (336)
.|++..+.+|.-+-+-...-....+-|+.++.+.+..+. .|+=|+.+.+--+.+-.+=.++..+.....
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE-----------~I~vLkaQv~IY~~DF~aERadREkl~~eK 92 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME-----------TVPVLKAQADIYKADFQAERHAREKLVEKK 92 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHccchhhHHHHHhHH
Confidence 367777777777766655555555555555555444442 366677776666666554333333333333
Q ss_pred HHHHHHHHHH
Q 035694 104 KELSQALAET 113 (336)
Q Consensus 104 ~eL~~~Lqql 113 (336)
..|...|..|
T Consensus 93 e~L~~ql~~L 102 (110)
T 2v4h_A 93 EYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 43
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.45 E-value=2.1e+02 Score=25.22 Aligned_cols=36 Identities=6% Similarity=-0.056 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694 139 RLKRQKLRTSQLALRATRIESEACRASAAEALRCIG 174 (336)
Q Consensus 139 EqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk 174 (336)
-+.-..+..++.|+....-|++-.+.....+...-+
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888888888888888666654443
No 44
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.72 E-value=78 Score=24.36 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhh
Q 035694 30 KAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDST 85 (336)
Q Consensus 30 K~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~kt 85 (336)
-..|..-.+|+..|.+.+.+||..|.+-..---.|.....-+...++.|+-.++-.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 34566677888899999999999999887766666666666666666666655443
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.58 E-value=1.5e+02 Score=23.16 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 105 ELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIES 159 (336)
Q Consensus 105 eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~ 159 (336)
-|...+..+..+-..+..+...++.....+..+..+-+.....-+.||++.+--+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666666666666666667777788888888888888888888776543
No 46
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=34.92 E-value=2.1e+02 Score=24.26 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=36.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 100 TMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA 161 (336)
Q Consensus 100 r~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA 161 (336)
.+.+..|...|..+..-++.+-..-..+...+..+-.+++.+.-.+.+++.++...-.++..
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556555555555555555555556666666666666666666666655555443
No 47
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.79 E-value=48 Score=23.46 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHHhHHHhhhhhhHHHHHH
Q 035694 16 TSDLEAKTAE-LVKTKAELKRAKDNAMQSWLDSKPLIDELE 55 (336)
Q Consensus 16 ~~~l~s~~~E-LeeaK~~Lekak~E~~~lr~aaesLr~ELe 55 (336)
...|...+.| |.+++.+|+++|+|+- +.+++||-
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~EII------eAi~~El~ 40 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKEEII------EAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 3445666666 5788888888888763 44555554
No 48
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=33.32 E-value=2.5e+02 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035694 137 VLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 137 EaEqaKa~i~taE~RL~Aa~ 156 (336)
+++.++..+..++..|.++.
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~ 118 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAK 118 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 49
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.07 E-value=1.3e+02 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 035694 24 AELVKTKAELKRAKDNAM 41 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~ 41 (336)
.+|..++..|..+.....
T Consensus 70 ~~l~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 50
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.48 E-value=2.2e+02 Score=23.89 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 035694 78 LQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLAT-------DEERRARSNLKQVLRLKRQKLRT 147 (336)
Q Consensus 78 Le~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea-------~~areE~~klkeEaEqaKa~i~t 147 (336)
++++|.....+|+-+- +....+++|...+-.+-.+...+.... ...+..+..-+.|++.|++.+.+
T Consensus 49 ~qsele~k~aeLe~le----eL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLE----ELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555441 233445555555555555554443321 23344455555666666555543
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.64 E-value=2.1e+02 Score=23.31 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 108 QALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTS 148 (336)
Q Consensus 108 ~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ta 148 (336)
..|..+....+...-.......+..++..++.--+-.|...
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444433
No 52
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.43 E-value=4.5e+02 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHH
Q 035694 205 AEWRVSVSMEQREGVEASRDFALSRL 230 (336)
Q Consensus 205 A~kRVaaA~aqVeaAKaSE~e~L~RL 230 (336)
|+..|-...++.++|+.+-...-.-|
T Consensus 400 ~~~dv~~~~a~~d~~~~~~s~~~~~l 425 (551)
T 2b5u_A 400 AQTDVNNKQAAFDAAAKEKSDADAAL 425 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhh
Confidence 44457777888888876665444433
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.93 E-value=2.6e+02 Score=24.21 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694 44 WLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE 95 (336)
Q Consensus 44 r~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~ 95 (336)
......|+.|+......+..+.+....-.-.+..|++|+...+..+..+..+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554445555555555555555555444433
No 54
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.17 E-value=2.2e+02 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Q 035694 31 AELKRAKDNAMQSWLDSKPLIDELERLKAT 60 (336)
Q Consensus 31 ~~Lekak~E~~~lr~aaesLr~ELekeK~e 60 (336)
..|..++.|+..++..+.+|..||+.++.-
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666666666666555443
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.48 E-value=2.2e+02 Score=22.91 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 111 AETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS 165 (336)
Q Consensus 111 qql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS 165 (336)
..+..++.++...-.....+...|..++...+..-.++|..+..+-.|+|-.-||
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555555555555555555444
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.28 E-value=1.8e+02 Score=21.85 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 120 LKLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153 (336)
Q Consensus 120 AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~ 153 (336)
+-.+....+..+.-+..+++.+.-.+.++..+|.
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444443
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.80 E-value=3.9e+02 Score=25.51 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
.++.....++.++.+....+.+..+++...++.+++.....+..+..+++.+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 33333444444444445555555555555555566666666666655555443
No 58
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.69 E-value=2.5e+02 Score=23.16 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=33.9
Q ss_pred HHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 035694 64 DKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120 (336)
Q Consensus 64 lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~A 120 (336)
+.++-......|+.|......+.+.|..++-.=..++.. +...|.+|+..-++.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 455666677888888888888888887777665444433 333444444444433
No 59
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.34 E-value=2.4e+02 Score=22.88 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhh
Q 035694 22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMS 91 (336)
Q Consensus 22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~ 91 (336)
+..+|-.+-..|-.+...+..-.-.|+.|+.-|+++|+---.-.. .|..|+.||..-+..|.-
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~-------~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQA-------RIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999876221111 367777777776666553
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.13 E-value=2.4e+02 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035694 103 IKELSQALAETRQELEALKLATDEERRARSNL 134 (336)
Q Consensus 103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~kl 134 (336)
-+.+...+-....|...+...-.-++.-+.+|
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444333333
No 61
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=25.96 E-value=5.6e+02 Score=26.38 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=64.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHH----HhhH------hHHHH-HHHHH
Q 035694 43 SWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEV----NATM------MIKEL-SQALA 111 (336)
Q Consensus 43 lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~----kar~------~~~eL-~~~Lq 111 (336)
.+.-.+-++.||+..-..+++.++|...+-..+.++..+|+-++..|....+.-. -++. -|-.+ ...+|
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~ 398 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQ 398 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhh
Confidence 3334555677777778888899999889999999999999888877665443210 0110 01111 12233
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 035694 112 ETRQELEALKLATDEERRARSNLKQVLRLKRQKLR-TSQLALRATRIESE 160 (336)
Q Consensus 112 ql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~-taE~RL~Aa~kE~E 160 (336)
.+..++..+ +-...+++.+...++++|. .+|.|-+...|+-.
T Consensus 399 ~~~~dv~~~-------~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 399 RAQTDVNNK-------QAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhH-------HHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 333333333 3334444555556666654 56777666666544
No 62
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.79 E-value=3.2e+02 Score=23.52 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-------HhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHH
Q 035694 17 SDLEAKTAELVKTKAELKRAKD-------NAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSI 89 (336)
Q Consensus 17 ~~l~s~~~ELeeaK~~Lekak~-------E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eL 89 (336)
..+.++..||++-+.+|+-+-. -+.++..---.-..||-++++++..++.....+.....-=-.+-++---.+
T Consensus 18 ~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDi 97 (167)
T 4gkw_A 18 QDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDM 97 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhH
Confidence 4467788888888888874422 222232222223467777777777776666555444332222222222222
Q ss_pred hhhHHHH---HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035694 90 MSKKEEE---VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKL 145 (336)
Q Consensus 90 e~~~~~E---~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i 145 (336)
--+.+.| .+...|+..|+.++--++.|+|+-|......---..+++-|-+..+..+
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 2223333 2344688889999999999999999888877777778887777666544
No 63
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.47 E-value=2.4e+02 Score=21.90 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 035694 79 QAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRAR 131 (336)
Q Consensus 79 e~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~ 131 (336)
...+..+..+|+++.--+.+-+..-..|...|.++.+|-.......+.-+...
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444444555555666666665555555444433
No 64
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.45 E-value=1.1e+02 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.132 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHH
Q 035694 19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDE 53 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~E 53 (336)
+.++.+||.+.+.++.....+...++..++.|..|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887777777777777665443
No 65
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.30 E-value=1.7e+02 Score=26.51 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035694 141 KRQKLRTSQLALRATRIESE 160 (336)
Q Consensus 141 aKa~i~taE~RL~Aa~kE~E 160 (336)
+++.+..++..|.++...+.
T Consensus 119 a~~~~~~~~a~l~~~~a~l~ 138 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIK 138 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 66
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.06 E-value=2.4e+02 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHH
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERL 57 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELeke 57 (336)
.+|..++..|..+..............+.++++.
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444443333333334444433
No 67
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.73 E-value=3.2e+02 Score=22.85 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHH
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATD 125 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~ 125 (336)
-|..+|-+-...|-.....-..-.-+|-.|..-|..-+..- +..-.+-++-+.+|...|+.+..|+|+.++.-+
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 34444444443333333333444567777777777655443 111122335566677777777777777666554
No 68
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.65 E-value=1.9e+02 Score=22.54 Aligned_cols=58 Identities=24% Similarity=0.212 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHh
Q 035694 24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDS 84 (336)
Q Consensus 24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~k 84 (336)
.+|-+.|.-|+-++++. -.=++-|-.|-+-++.++.++++--..-...|..|+.+|.+
T Consensus 19 ~eLl~TKNaLnvvk~DL---I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 19 TQLLETKNALNIVKNDL---IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666543 34456666666666666666665555555555666665543
No 69
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.53 E-value=3.6e+02 Score=23.29 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=51.4
Q ss_pred HHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 78 LQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETR-QELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR 156 (336)
Q Consensus 78 Le~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~-~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~ 156 (336)
...++.+...+|.--+.....+......|...|..|+ +=.++|..+...++.+...+....++-+..+...+.+|..-.
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333344455556677777775 335778888888888888888888887777777777766544
Q ss_pred HHH
Q 035694 157 IES 159 (336)
Q Consensus 157 kE~ 159 (336)
..+
T Consensus 136 ~ql 138 (154)
T 2ocy_A 136 LQL 138 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.29 E-value=66 Score=32.80 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035694 50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERR 129 (336)
Q Consensus 50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~are 129 (336)
|..-|.....+....++-...+.-++..|+.++..+..+-+.+......+..++..|...-.....|-+.+-.+......
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 419 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQE 419 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694 130 ARSNLKQVLRLKRQKLRTSQLALRATRIESEACRA 164 (336)
Q Consensus 130 E~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkA 164 (336)
++..+.++.+.........+..|..|....+.++.
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~ 454 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAA 454 (575)
T ss_dssp ----------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.07 E-value=5.8e+02 Score=26.38 Aligned_cols=96 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 035694 49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEER 128 (336)
Q Consensus 49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~ar 128 (336)
.|.+-|+++|..++.+.+.-..+...+.++-..|........ .-+...-+...+|.+.++.|..+++.-......-|
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~---dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN---NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035694 129 RARSNLKQVLRLKRQKLRT 147 (336)
Q Consensus 129 eE~~klkeEaEqaKa~i~t 147 (336)
.-++.+..+|..-.-.|..
T Consensus 138 snLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 72
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.71 E-value=3.1e+02 Score=23.86 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=38.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhh
Q 035694 42 QSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSK 92 (336)
Q Consensus 42 ~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~ 92 (336)
.++....+|+.+|...+.+|..|-....-....|..|..++...+.+|...
T Consensus 82 e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 82 DYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888888888888887777778888888888888877776653
No 73
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.92 E-value=3.1e+02 Score=21.52 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=31.4
Q ss_pred hhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHH
Q 035694 76 SELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATD 125 (336)
Q Consensus 76 ~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~ 125 (336)
+++..+|.+++......+.+=.++...-.+|...|+++..++++++..+.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~~ 76 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEGA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 35667777777766655544444555566677777788888888766554
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.79 E-value=78 Score=22.63 Aligned_cols=30 Identities=27% Similarity=0.240 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHhhccchhhhhhhHHHH
Q 035694 52 DELERLKATLASDKNRCSMSNMIVSELQAE 81 (336)
Q Consensus 52 ~ELekeK~eLa~lKere~~asa~V~sLe~e 81 (336)
.+.+.++.+++.|+.+...-...+..|..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333333333
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.40 E-value=3e+02 Score=21.16 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 035694 19 LEAKTAELVKTKAELKRAK 37 (336)
Q Consensus 19 l~s~~~ELeeaK~~Lekak 37 (336)
+.....||..++..|++..
T Consensus 16 m~~~eeel~~lke~l~k~e 34 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTE 34 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 76
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.27 E-value=3.6e+02 Score=23.23 Aligned_cols=11 Identities=27% Similarity=-0.022 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 035694 53 ELERLKATLAS 63 (336)
Q Consensus 53 ELekeK~eLa~ 63 (336)
+|+.++..|..
T Consensus 37 ~le~e~~kl~~ 47 (146)
T 2xnx_M 37 EKELEEKKKAL 47 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 77
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.01 E-value=2.8e+02 Score=24.21 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 035694 24 AELVKTKAELKRA 36 (336)
Q Consensus 24 ~ELeeaK~~Leka 36 (336)
.+|..++.+|..+
T Consensus 60 ~~l~~a~a~l~~a 72 (277)
T 2f1m_A 60 ATYDSAKGDLAKA 72 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
Done!