BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035695
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 106/142 (74%), Gaps = 5/142 (3%)
Query: 302 NKKMFNGGRVEVWTCMNFSTCLNQDVIG-FCQRLVDMCNRKGMVFNRRPVIPISSYNPYQ 360
+KKM NG +V WTC++FST +++ + FC++L+ MC KGM F +P IP S P
Sbjct: 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 361 IEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRN 420
IE+AL+D+H + PG LQLLI+ILPDV GSYG+IKR+CETELGIVSQCCQP+ + N
Sbjct: 62 IEEALLDIHKRA--PG--LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLN 117
Query: 421 MQYFENVALKINVKVGGRNTVL 442
QY ENVALKINVK GGRNTVL
Sbjct: 118 KQYMENVALKINVKTGGRNTVL 139
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 145/295 (49%), Gaps = 27/295 (9%)
Query: 258 KFGIQVADGLTSVDARILPAPMLKYHKSGREASV-NPDFGQWNMINKKMFNGGRVEVWTC 316
+FGI V D +T V R+L P + Y GR ++ P G W+M NK+ G ++VW
Sbjct: 398 EFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAI 455
Query: 317 MNFS---TCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTT 373
F+ C + F ++L + GM +P + +E H K T
Sbjct: 456 ACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFR--HLKNT 513
Query: 374 QPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433
G LQL+++ILP Y +KRV +T LG+ +QC Q K+ Q N+ LKINV
Sbjct: 514 YAG--LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINV 571
Query: 434 KVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKY 493
K+GG N +L + + P V +P I GADVTHP G+ PSI AVV SMD +Y
Sbjct: 572 KLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRY 627
Query: 494 RGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
V Q H +EIIQDL M+RELLI F ST KP IIFY
Sbjct: 628 CATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFY 669
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 25/251 (9%)
Query: 28 AVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINL 87
A + P RP FGT GR ++AN F + + K DI+HY++ I PE +++NREI+ ++
Sbjct: 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQH 83
Query: 88 YRLTNLGERIPAYDGMKSIYTAGPLPF--ESKEFIITLXXXXXXXXXXXXXGTERQFRVV 145
++ G+R P +DG K++YTA PLP + E +TL G +R F+V
Sbjct: 84 FKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL----------PGEGKDRIFKVS 133
Query: 146 IRLASQPYVYTLQ------------KFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQ 193
I+ S + L + IQ LDVV+R PS ++T VGRSFF+ G
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNP 193
Query: 194 LGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLM-XXXXXXXXXXXXXXXXXXRPLS 252
LG G E W G+ QS+RP+ + + LNI S Y +PL+
Sbjct: 194 LGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253
Query: 253 DQVRLKFGIQV 263
D R+KF ++
Sbjct: 254 DSQRVKFTKEI 264
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 145/295 (49%), Gaps = 27/295 (9%)
Query: 258 KFGIQVADGLTSVDARILPAPMLKYHKSGREASV-NPDFGQWNMINKKMFNGGRVEVWTC 316
+FGI V D +T V R+L P + Y GR ++ P G W+M NK+ G ++VW
Sbjct: 396 EFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAI 453
Query: 317 MNFS---TCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTT 373
F+ C + F ++L + GM +P + +E H K T
Sbjct: 454 ACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFR--HLKNT 511
Query: 374 QPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433
G LQL+++ILP Y +KRV +T LG+ +QC Q K+ Q N+ LKINV
Sbjct: 512 YAG--LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINV 569
Query: 434 KVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKY 493
K+GG N +L + + P V +P I GADVTHP G+ PSI AVV SMD +Y
Sbjct: 570 KLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRY 625
Query: 494 RGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
V Q H +EIIQDL M+RELLI F ST KP IIFY
Sbjct: 626 CATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFY 667
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 25/251 (9%)
Query: 28 AVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINL 87
A + P RP FGT GR ++AN F + + K DI+HY++ I PE +++NREI+ ++
Sbjct: 22 AFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQH 81
Query: 88 YRLTNLGERIPAYDGMKSIYTAGPLPF--ESKEFIITLXXXXXXXXXXXXXGTERQFRVV 145
++ G+R P +DG K++YTA PLP + E +TL G +R F+V
Sbjct: 82 FKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL----------PGEGKDRIFKVS 131
Query: 146 IRLASQPYVYTLQ------------KFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQ 193
I+ S + L + IQ LDVV+R PS ++T VGRSFF+ G
Sbjct: 132 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNP 191
Query: 194 LGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLM-XXXXXXXXXXXXXXXXXXRPLS 252
LG G E W G+ QS+RP+ + + LNI S Y +PL+
Sbjct: 192 LGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 251
Query: 253 DQVRLKFGIQV 263
D R+KF ++
Sbjct: 252 DSQRVKFTKEI 262
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 98/147 (66%), Gaps = 5/147 (3%)
Query: 301 INKKMFNGGRVEVWTCMNFSTCLNQDVI-GFCQRLVDMCNRKGMVFNRRPVIPISSYNPY 359
+NKKM NGG V W C+NFS + ++ FCQ L MC GM FN PV+P S P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 360 QIEKAL-VDVHNKTTQ--PGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKH 415
Q+EK L H+ T++ GK++ LLI+ILPD GS YG +KR+CETELGIVSQCC KH
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 416 ASSRNMQYFENVALKINVKVGGRNTVL 442
+ QY NVALKINVKVGGRNTVL
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 302 NKKMFNGGRVEVWTCMNFSTCLNQDVI-GFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQ 360
NKKM NGG V W C+NFS + ++ FCQ L MC GM FN PV+P S P Q
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQ 61
Query: 361 IEKAL-VDVHNKTTQ--PGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHA 416
+EK L H+ T++ GK++ LLI+ILPD GS YG +KR+CETELGIVSQCC KH
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 417 SSRNMQYFENVALKINVKVGGRNTVL 442
+ QY NVALKINVKVGGRNTVL
Sbjct: 122 FKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/148 (54%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 301 INKKMFNGGRVEVWTCMNFSTCLNQDVI-GFCQRLVDMCNRKGMVFNRRPVIPISSYNPY 359
+NKKM NGG V W C+NFS + ++ FCQ L MC GM FN PV+P S P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 360 QIEKAL-VDVHNKTTQ--PGKQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPK 414
Q+EK L H+ T++ GK++ LLI+ILPD + S YG +KR+CETELGIVSQCC K
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCLTK 120
Query: 415 HASSRNMQYFENVALKINVKVGGRNTVL 442
H + QY NVALKINVKVGGRNTVL
Sbjct: 121 HVFKMSKQYMANVALKINVKVGGRNTVL 148
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 302 NKKMFNGGRVEVWTCMNFSTCLNQDVI-GFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQ 360
NKK NGG V W C+NFS + ++ FCQ L C G FN PV+P S P Q
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPEQ 61
Query: 361 IEKAL-VDVHNKTTQ--PGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHA 416
+EK L H+ T++ GK++ LLI+ILPD GS YG +KR+CETELGIVSQCC KH
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 417 SSRNMQYFENVALKINVKVGGRNTVL 442
+ QY NVALKINVKVGGRNTVL
Sbjct: 122 FKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 310 RVEVWTCMNF-STCLNQDVIGFCQRLVDMCNRKGMVFNRR------PVIPISSYNPYQIE 362
++E WT + + N+ V + NR G+ N R +P S +
Sbjct: 13 KIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKV 72
Query: 363 KALVDVHNKTTQPGKQLQLLIIILP--DVRGSYGRIKRVCETELGIVSQCCQPKHASSRN 420
K L+ H Q ++++LP DV Y +KR + G+ + CC + S
Sbjct: 73 KELMSSH----------QFVVVLLPRKDV-AIYNMVKRAADITFGVHTVCCVAEKFLSTK 121
Query: 421 MQ--YFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHP---QPGED-- 473
Q YF NV LK+N+K GG N ++ IPL+ T++ G DVTHP G+
Sbjct: 122 GQLGYFANVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPA 177
Query: 474 SSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLY 511
S+PSIV +V+++D + ++ +V H +E + + +
Sbjct: 178 SAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF 214
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 310 RVEVWTCMNF-STCLNQDVIGFCQRLVDMCNRKGMVFNRR------PVIPISSYNPYQIE 362
++E WT + + N+ V + NR G+ N R +P S +
Sbjct: 13 KIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKV 72
Query: 363 KALVDVHNKTTQPGKQLQLLIIILP--DVRGSYGRIKRVCETELGIVSQCCQPKHASSRN 420
K L+ H Q ++++LP DV Y +KR + G+ + CC + S
Sbjct: 73 KELMSSH----------QFVVVLLPRKDV-AIYNMVKRAADITFGVHTVCCVAEKFLSTK 121
Query: 421 MQ--YFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHP---QPGED-- 473
Q YF NV LK+N+K GG N ++ IPL+ T++ G DVTHP G+
Sbjct: 122 GQLGYFANVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPA 177
Query: 474 SSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLY 511
S+PSIV +V+++D + ++ +V H +E + + +
Sbjct: 178 SAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF 214
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 302 NKKMFNGGRVEVWTCMNFS---TCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNP 358
NK+ G ++VW F+ C + F ++L + GM +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 61
Query: 359 YQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASS 418
+E H K T G LQL+++ILP Y +KRV +T LG+ +QC Q K+
Sbjct: 62 DSVEPMFR--HLKNTYAG--LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 117
Query: 419 RNMQYFENVALKINVKVGGRN 439
Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 302 NKKMFNGGRVEVWTCMNFS---TCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNP 358
NK+ G ++VW F+ C + F ++L + G +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPIQGQPCFCKYAQGA 61
Query: 359 YQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASS 418
+E H K T G LQL+++ILP Y +KRV +T LG +QC Q K+
Sbjct: 62 DSVEPXFR--HLKNTYAG--LQLVVVILPGKTPVYAEVKRVGDTVLGXATQCVQXKNVQR 117
Query: 419 RNMQYFENVALKINVKVGGRN 439
Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 303 KKMFNGGRVEVWTCMNFSTC--LNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISS----- 355
K + G V+ W ++F+ N+ F L+D C R GM P++ +S
Sbjct: 3 KGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQM-EAPIVYKTSRMETL 61
Query: 356 YNPYQIEKALVDVHNKTTQP--GKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQP 413
N IE+ L V ++ ++ G + L++ + Y +K + ET+LG+V+QC
Sbjct: 62 SNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLT 121
Query: 414 KHASSRNMQYFENVALKINVKVGGRNTVL 442
A+ QY N+ALK+N KVGG N L
Sbjct: 122 GPATKGGDQYRANLALKMNAKVGGSNVEL 150
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 393 YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQK-RIP 451
Y R+K + + + G ++ C + ++QY NV +K+N+K+ G N L K I
Sbjct: 697 YDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLID 756
Query: 452 LVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQ-AHNEEIIQDL 510
++ P ++ G+DVTH P +D + SI ++V S D + T++ G Q EEII +
Sbjct: 757 KESNLPILVLGSDVTH-YPEKDQN-SIASLVGSYD-DKFTQFPGDYMLQDGPGEEIITN- 812
Query: 511 YKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
V M+ L I K + + P I+++
Sbjct: 813 -----------VGSLMLNRLKIYQKHNNGKLPTKIMYF 839
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 310 RVEVWTCMNFS-TCLNQDVIGFCQRLVDMCNRKGMVFNRR------PVIPISSYNPYQIE 362
++E WT + + N+ V + NR G+ N R +P S +
Sbjct: 13 KIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKV 72
Query: 363 KALVDVHNKTTQPGKQLQLLIIILP--DVRGSYGRIKRVCETELGIVSQCCQPKHASSRN 420
K L+ H Q ++++LP DV Y +KR + G+ + CC + S
Sbjct: 73 KELMSSH----------QFVVVLLPRKDV-AIYNMVKRAADITFGVHTVCCVAEKFLSTK 121
Query: 421 MQ--YFENVALKINVKVGGRN 439
Q YF NV LK+N+K GG N
Sbjct: 122 GQLGYFANVGLKVNLKFGGTN 142
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 34/143 (23%)
Query: 258 KFGIQVADGLTSVDARILPAPMLKY-----------HKSGREASVNPDFGQ------WNM 300
K+GI A+ L+ RI A +K+ +G+E ++ Q N
Sbjct: 214 KWGIWYANELSLDGFRIDAAKHIKFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENY 273
Query: 301 INKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQ 360
+NK FN +V N +Q +RL+D G V +R P
Sbjct: 274 LNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRRLLD-----GTVVSRHP----------- 317
Query: 361 IEKALVDVHNKTTQPGKQLQLLI 383
EKA+ V N TQPG+ L+ +
Sbjct: 318 -EKAVTFVENHDTQPGQSLESTV 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,483,421
Number of Sequences: 62578
Number of extensions: 554271
Number of successful extensions: 1178
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 18
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)