Query 035695
Match_columns 548
No_of_seqs 173 out of 1006
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1.3E-85 2.9E-90 745.0 51.9 503 30-548 32-716 (900)
2 KOG1042 Germ-line stem cell di 100.0 8.5E-77 1.8E-81 609.6 28.9 454 37-548 88-680 (845)
3 KOG1041 Translation initiation 100.0 1.3E-68 2.9E-73 601.2 43.9 488 30-548 44-684 (876)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 6.2E-52 1.3E-56 439.0 25.9 265 257-548 4-276 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.2E-46 2.7E-51 402.3 24.7 260 257-548 39-304 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.1E-42 2.3E-47 365.4 24.5 240 266-548 1-249 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2.6E-29 5.7E-34 255.9 11.3 149 381-548 1-154 (302)
8 cd04659 Piwi_piwi-like_ProArk 99.9 4.4E-21 9.5E-26 202.9 14.4 158 359-548 94-266 (404)
9 PF08699 DUF1785: Domain of un 99.6 1.6E-16 3.5E-21 116.0 3.5 52 177-229 1-52 (52)
10 COG1431 Argonaute homolog, imp 96.1 0.026 5.6E-07 60.2 8.9 189 274-486 306-500 (685)
11 PF09373 PMBR: Pseudomurein-bi 67.3 6.5 0.00014 25.7 2.7 20 528-547 14-33 (33)
12 cd06559 Endonuclease_V Endonuc 66.7 15 0.00032 35.2 6.1 74 456-547 24-99 (208)
13 PF08459 UvrC_HhH_N: UvrC Heli 52.9 29 0.00063 31.6 5.2 71 456-547 10-85 (155)
14 PF00763 THF_DHG_CYH: Tetrahyd 51.3 29 0.00063 29.9 4.8 57 376-434 27-85 (117)
15 PRK14166 bifunctional 5,10-met 40.3 77 0.0017 31.9 6.5 55 377-433 29-85 (282)
16 PRK14187 bifunctional 5,10-met 39.1 88 0.0019 31.7 6.7 56 377-434 31-88 (294)
17 PRK14193 bifunctional 5,10-met 38.2 88 0.0019 31.5 6.5 56 377-434 31-88 (284)
18 PRK14194 bifunctional 5,10-met 37.5 96 0.0021 31.5 6.7 36 378-413 33-70 (301)
19 PRK14169 bifunctional 5,10-met 36.8 1E+02 0.0022 31.0 6.7 36 378-413 30-67 (282)
20 PRK14171 bifunctional 5,10-met 36.3 1.1E+02 0.0023 31.0 6.8 55 377-433 31-87 (288)
21 PRK14192 bifunctional 5,10-met 36.2 1.2E+02 0.0025 30.6 7.1 64 377-443 32-100 (283)
22 PRK14183 bifunctional 5,10-met 36.1 1E+02 0.0022 31.0 6.6 56 377-434 30-87 (281)
23 PRK14180 bifunctional 5,10-met 34.9 1.1E+02 0.0023 30.9 6.5 55 377-433 30-86 (282)
24 PRK14176 bifunctional 5,10-met 34.3 1.4E+02 0.0029 30.2 7.1 55 377-433 37-93 (287)
25 PRK14185 bifunctional 5,10-met 33.7 1E+02 0.0022 31.3 6.1 55 377-433 30-86 (293)
26 PRK14190 bifunctional 5,10-met 33.6 1.2E+02 0.0025 30.7 6.5 38 377-414 31-70 (284)
27 PRK14182 bifunctional 5,10-met 33.2 1.1E+02 0.0025 30.7 6.4 37 377-413 29-67 (282)
28 PRK14170 bifunctional 5,10-met 32.5 1.2E+02 0.0026 30.5 6.5 37 378-414 31-69 (284)
29 PRK14167 bifunctional 5,10-met 31.8 1.3E+02 0.0028 30.5 6.6 18 522-539 274-291 (297)
30 PRK14175 bifunctional 5,10-met 31.1 1.3E+02 0.0027 30.5 6.3 37 378-414 32-70 (286)
31 PRK14184 bifunctional 5,10-met 30.0 1.4E+02 0.0031 30.0 6.5 55 377-433 30-86 (286)
32 PRK14174 bifunctional 5,10-met 29.9 1.4E+02 0.003 30.3 6.4 56 377-434 30-87 (295)
33 PRK14188 bifunctional 5,10-met 29.6 1.5E+02 0.0032 30.1 6.6 36 378-413 32-69 (296)
34 PRK14189 bifunctional 5,10-met 29.4 1.7E+02 0.0036 29.6 6.9 36 378-413 32-69 (285)
35 PRK10792 bifunctional 5,10-met 27.9 1.5E+02 0.0032 29.9 6.2 55 378-434 33-89 (285)
36 PRK14186 bifunctional 5,10-met 27.5 1.6E+02 0.0035 29.9 6.3 36 378-413 32-69 (297)
37 PLN02516 methylenetetrahydrofo 27.4 1.8E+02 0.0038 29.6 6.7 37 377-413 38-76 (299)
38 PRK14172 bifunctional 5,10-met 26.2 1.8E+02 0.0039 29.2 6.4 55 378-434 32-88 (278)
39 PF10297 Hap4_Hap_bind: Minima 26.0 46 0.00099 18.3 1.2 14 26-39 2-15 (17)
40 PLN02897 tetrahydrofolate dehy 25.3 1.8E+02 0.004 30.1 6.4 19 393-411 103-121 (345)
41 PRK14179 bifunctional 5,10-met 24.9 2.1E+02 0.0046 28.8 6.6 36 378-413 32-69 (284)
42 PRK14168 bifunctional 5,10-met 24.5 1.9E+02 0.0041 29.4 6.2 35 378-412 33-69 (297)
43 PRK14173 bifunctional 5,10-met 23.8 2.2E+02 0.0048 28.7 6.6 16 522-537 266-281 (287)
44 PLN02616 tetrahydrofolate dehy 23.8 2.1E+02 0.0046 29.8 6.5 55 377-433 102-158 (364)
45 PRK14178 bifunctional 5,10-met 23.1 2.6E+02 0.0057 28.1 6.9 34 379-412 27-62 (279)
46 PRK14191 bifunctional 5,10-met 22.2 2.5E+02 0.0054 28.3 6.5 36 378-413 31-68 (285)
47 PRK14177 bifunctional 5,10-met 21.9 2.5E+02 0.0055 28.3 6.5 61 378-440 33-97 (284)
48 PRK14181 bifunctional 5,10-met 20.7 2.8E+02 0.006 28.0 6.6 34 379-412 27-62 (287)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.3e-85 Score=744.98 Aligned_cols=503 Identities=35% Similarity=0.566 Sum_probs=407.4
Q ss_pred cCCCCCCCCCCCCeEEEEeeEEEEEcC--CcceEEEEEEecC----CCCchHHHHHHHHHHHHHhhhccCCCCceeeeCC
Q 035695 30 RLPVRPGFGTRGRKCVVRANHFMVQLA--KRDIHHYDVSIDP----EVTSQKINREIISQLINLYRLTNLGERIPAYDGM 103 (548)
Q Consensus 30 ~~~~RP~~Gt~G~~i~l~tN~f~l~~~--~~~iy~Y~V~i~p----~~~~r~~~r~ii~~l~~~~~~~~~~~~~~~yDG~ 103 (548)
.+++||+||+.|++|.|+||||+|.++ +..+|||+|+|+| ++.++++++.|++++++++.. .+.+..++|||+
T Consensus 32 ~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~ 110 (900)
T PLN03202 32 LPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGE 110 (900)
T ss_pred ccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCc
Confidence 678899999999999999999999973 7789999999996 345577888999999887654 354447899999
Q ss_pred CcEEecCCCCCCCceEEEEcCCCCC------------CCCCC------CCCCCCceEEEEEEeccccChhhHHHH-----
Q 035695 104 KSIYTAGPLPFESKEFIITLPDSDP------------RPSSS------ASPGTERQFRVVIRLASQPYVYTLQKF----- 160 (548)
Q Consensus 104 ~~lys~~~L~~~~~~~~v~~~~~~~------------~~~~~------~~~~~~~~~~V~i~~~~~i~~~~l~~~----- 160 (548)
++|||+.+|+.+..++.|.+.++.+ +.+.. ....+++.|+|+|++++.+++++|.+|
T Consensus 111 ~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~ 190 (900)
T PLN03202 111 KSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQE 190 (900)
T ss_pred cceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCC
Confidence 9999999999866678887764210 00000 001246889999999999999988877
Q ss_pred -------HHHHHHHHhcCCCCC-ccccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccH
Q 035695 161 -------IQVLDVVLRAAPSEK-HTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLL 232 (548)
Q Consensus 161 -------iq~lniilr~~~~~~-~~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l 232 (548)
||+||++||+.++.. ++.+||+||.+..+...++++|+|+|+||++|||+++++++||+|++|++|+++++|
T Consensus 191 ~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l 270 (900)
T PLN03202 191 SENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPV 270 (900)
T ss_pred CCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcH
Confidence 999999999999754 889999999866445567899999999999999999999999999999999999999
Q ss_pred HHHHhhcc----------------ccccC----------------------------C-----------C----------
Q 035695 233 IFILSKLD----------------FFFFS----------------------------D-----------L---------- 247 (548)
Q Consensus 233 ~d~l~~~~----------------~l~~r----------------------------d-----------~---------- 247 (548)
+|+|.++. +.|++ + .
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~ 350 (900)
T PLN03202 271 VDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKH 350 (900)
T ss_pred HHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHH
Confidence 99987421 00110 0 0
Q ss_pred -------------------------------C-------CCCChHH--------------H-------------------
Q 035695 248 -------------------------------S-------RPLSDQV--------------R------------------- 256 (548)
Q Consensus 248 -------------------------------~-------~~Ls~~~--------------r------------------- 256 (548)
+ +.|++.+ |
T Consensus 351 Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l 430 (900)
T PLN03202 351 RGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPML 430 (900)
T ss_pred cCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHH
Confidence 0 0122221 1
Q ss_pred hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCCCchhHHHHHHHHHH
Q 035695 257 LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVD 336 (548)
Q Consensus 257 ~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l~~ 336 (548)
+.|||+|+++|++|+||+||||+|.|+++. .+.|.+|+|++++.+|+.|+++.+|++++|+++. .+++|++.|.+
T Consensus 431 ~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~--~~~~f~~~l~~ 505 (900)
T PLN03202 431 RSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARC--DIRHLVRDLIK 505 (900)
T ss_pred HHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCch--hHHHHHHHHHH
Confidence 789999999999999999999999998753 2457899999999999999999999999886442 46899999999
Q ss_pred HHHhcCCcccCCCcccccc------CChhhHHHHHHHHHHhccCCCCCceEEEEEeCCC-CCc-hhhhhhhcccccceee
Q 035695 337 MCNRKGMVFNRRPVIPISS------YNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDV-RGS-YGRIKRVCETELGIVS 408 (548)
Q Consensus 337 ~~~~~G~~i~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~-~~~-Y~~iK~~~d~~~gI~T 408 (548)
.|+.+||.+..|+...... ...+.++..++.+.+++. ..++|+|||||++ +.+ |+.||++||+++||+|
T Consensus 506 ~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~T 582 (900)
T PLN03202 506 CGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVT 582 (900)
T ss_pred HHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCccc
Confidence 9999999998754331111 012345666666666542 5689999999974 567 9999999999999999
Q ss_pred eeecccccCCCcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCC
Q 035695 409 QCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWP 488 (548)
Q Consensus 409 Qcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~ 488 (548)
|||... +.++||+.||+||||+||||+||.+..+....+|++.+.+|||||+||+||++++...|||||||||+||.
T Consensus 583 Qcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~ 659 (900)
T PLN03202 583 QCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWP 659 (900)
T ss_pred EEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcc
Confidence 999654 35789999999999999999999987543345788877899999999999998864469999999999977
Q ss_pred ccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHc-CCCCCceEeC
Q 035695 489 EVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIST-NRKPESIIFY 548 (548)
Q Consensus 489 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~n-g~lP~~IIiY 548 (548)
.+++|++.+++|.+++|++++|++++.+. .+++|+.++|+.|++.| |.+|++||||
T Consensus 660 ~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~----~~~~m~~~~L~~~~~~~~~~~P~~Iiiy 716 (900)
T PLN03202 660 LISRYRASVRTQSPKVEMIDSLFKPVGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIF 716 (900)
T ss_pred cccceeeEEEecCCCceeeeehhcccccc----chHHHHHHHHHHHHHHcCCCCCceeEEE
Confidence 89999999999999999999986544442 35899999999999876 6999999998
No 2
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.5e-77 Score=609.64 Aligned_cols=454 Identities=23% Similarity=0.380 Sum_probs=396.3
Q ss_pred CCCCCCeEEEEeeEEEEEc-CCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhccCCCCceeeeCCCcEEecCCCCCC
Q 035695 37 FGTRGRKCVVRANHFMVQL-AKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFE 115 (548)
Q Consensus 37 ~Gt~G~~i~l~tN~f~l~~-~~~~iy~Y~V~i~p~~~~r~~~r~ii~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~ 115 (548)
.|+.|.+++|.||||++.. +++.||||+|+|+|+++++++++ .++.+|.. .+|. .++|||. +||.+.++..+
T Consensus 88 tGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~----~~L~~h~~-lig~-~~~FDG~-iLfl~~k~eq~ 160 (845)
T KOG1042|consen 88 TGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLRE----ALLYNHTD-LIGK-GYAFDGT-ILFLKEKFEQK 160 (845)
T ss_pred cCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHH----HHHHHhHh-hhcc-ceeecce-eehhhHHHhhh
Confidence 5899999999999999988 69999999999999999999987 45556653 4554 6899998 99999998653
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHHHHHHHHHHhcCCC-CCccccccccccCCCCCCccC
Q 035695 116 SKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPS-EKHTVVGRSFFSTDLGPMGQL 194 (548)
Q Consensus 116 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~iq~lniilr~~~~-~~~~~vGr~ff~~~~~~~~~l 194 (548)
..+ .+ . .+..+..++|+|++++++..++.+. +|++|+|+|+.+. +++.++||+||++. ++.++
T Consensus 161 ~te-l~--~----------ks~~ge~i~I~ik~~~~~~~t~p~~-iqv~NlI~RR~~k~L~L~qigRnyynp~--~~i~i 224 (845)
T KOG1042|consen 161 QTE-LV--S----------KSRDGELIKITIKLTNELPSTDPQC-IQVFNLILRRSMKGLNLTQIGRNYYDPR--AKIEI 224 (845)
T ss_pred hhe-ee--c----------ccCCCceEEEEEEEeccccCCChhH-HHHHHHHHHHHHhhccHHHhhhccCCCC--ccccc
Confidence 211 11 1 2357789999999999999999999 9999999999996 79999999999998 67888
Q ss_pred -CCcEEEEEeeeeeeecccceeEEEeecceeeeeccccHHHHHhhcc-------------cccc--------C-------
Q 035695 195 -GDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLD-------------FFFF--------S------- 245 (548)
Q Consensus 195 -~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~l~~~~-------------~l~~--------r------- 245 (548)
.+.+++||||.+|||..+..++||.|++||++ +..|++|+|.++. ++|+ +
T Consensus 225 p~~km~lwPGy~tSIrq~E~~illctei~hKvm-R~ETvy~~m~~~~~~~~~~qe~~~~~~~glivLT~YNNktyriddv 303 (845)
T KOG1042|consen 225 PEFKMSLWPGYETSIRQHENDILLCTEISHKVM-RTETVYDIMRSCQHNTQRFQETVNKNVIGLIVLTRYNNKTYRIDDV 303 (845)
T ss_pred ccccceecCcchhHHHHhhhceeeehhhhhhHh-hhhHHHHHHHHHhhCHHHHHHHHHHHhcceEEEEecCCceeeeecc
Confidence 57999999999999999999999999999998 7899999997531 2221 0
Q ss_pred --------------------------------CC------------------------------CCCCChHHH-------
Q 035695 246 --------------------------------DL------------------------------SRPLSDQVR------- 256 (548)
Q Consensus 246 --------------------------------d~------------------------------~~~Ls~~~r------- 256 (548)
|. .+||+|++|
T Consensus 304 D~~~tP~stF~k~dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TGLtd~mr~dF~~Mk 383 (845)
T KOG1042|consen 304 DFSQTPLSTFKKDDGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTGLTDEMRSDFQLMK 383 (845)
T ss_pred ccCcCccceeeecCceeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeeehhhhhccCCcHHHHhhHHHHH
Confidence 10 257888765
Q ss_pred ----------------------------------hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccc--c
Q 035695 257 ----------------------------------LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWN--M 300 (548)
Q Consensus 257 ----------------------------------~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~--~ 300 (548)
+.|||+++++.++|+||+||+.+|.+++.. ....++.++|. +
T Consensus 384 ama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~--~~~~~~~ADWsr~~ 461 (845)
T KOG1042|consen 384 AMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQK--VPYEGKQADWSREF 461 (845)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcc--cCCCcchhhhhhhc
Confidence 899999999999999999999999999842 23345679996 6
Q ss_pred ccceeecCcccceEEEEEeCCCCchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCce
Q 035695 301 INKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQ 380 (548)
Q Consensus 301 ~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 380 (548)
+..+++....+++|+|++ +.+.....+.|+++|.+.+..+||++..|..+.+.+.+++++.+++++... .++|
T Consensus 462 R~c~i~~~~~l~~W~vi~-p~r~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~------~D~q 534 (845)
T KOG1042|consen 462 RTCGILRGSNLDNWAVIY-PGRNNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVG------ADIQ 534 (845)
T ss_pred ccccccccCCCcceEEEe-cCccHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhcc------CCce
Confidence 788899999999999996 445555669999999999999999999877777887778899888888765 6899
Q ss_pred EEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCC--cHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCC
Q 035695 381 LLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSR--NMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRP 457 (548)
Q Consensus 381 li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~--~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~ 457 (548)
+|+|++|+.+++ |++||++++++++||||||..+|+.+. -.+++++|++||||||||..|.|+ +|+ +.
T Consensus 535 mvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~ 605 (845)
T KOG1042|consen 535 MVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KG 605 (845)
T ss_pred EEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---cc
Confidence 999999999999 999999999999999999999999765 478999999999999999999998 787 78
Q ss_pred eEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHH
Q 035695 458 TIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIS 537 (548)
Q Consensus 458 tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ 537 (548)
+|+||+||+|.+.. +..|++|+|||+| ..+++|+|.+..|...+|+.+.| +-++..||++|++.
T Consensus 606 lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~~~~~ALr~y~~~ 669 (845)
T KOG1042|consen 606 LMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-------------KVFLAKALRQYYEV 669 (845)
T ss_pred ceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH-------------HHHHHHHHHHHHHh
Confidence 99999999998754 5789999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCCCceEeC
Q 035695 538 TNRKPESIIFY 548 (548)
Q Consensus 538 ng~lP~~IIiY 548 (548)
|..||+|||+|
T Consensus 670 n~~LPsRIi~Y 680 (845)
T KOG1042|consen 670 NRTLPSRIIVY 680 (845)
T ss_pred cccCCceEEEE
Confidence 99999999998
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-68 Score=601.22 Aligned_cols=488 Identities=36% Similarity=0.563 Sum_probs=388.5
Q ss_pred cCCCCCCCCCCCCeEEEEeeEEEEEc--CCcc-eEEEEEEecCCCCchHHHH-HHHHHHHHHhhhccCCCCceeeeCCCc
Q 035695 30 RLPVRPGFGTRGRKCVVRANHFMVQL--AKRD-IHHYDVSIDPEVTSQKINR-EIISQLINLYRLTNLGERIPAYDGMKS 105 (548)
Q Consensus 30 ~~~~RP~~Gt~G~~i~l~tN~f~l~~--~~~~-iy~Y~V~i~p~~~~r~~~r-~ii~~l~~~~~~~~~~~~~~~yDG~~~ 105 (548)
..+.||+.|+.|+.+.|.+|||.+++ ++.. +++|+|++.++..++..++ .+++.+........++...++|||+++
T Consensus 44 ~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~ 123 (876)
T KOG1041|consen 44 FPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKT 123 (876)
T ss_pred ccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCce
Confidence 45569999999999999999999876 4444 9999999999987777664 566655554432235555677999999
Q ss_pred EEecCCCCCCCceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHH------------HHHHHHHHhcCCC
Q 035695 106 IYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKF------------IQVLDVVLRAAPS 173 (548)
Q Consensus 106 lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~------------iq~lniilr~~~~ 173 (548)
|||..+++....++.+...... ....|.++|+++..+.+..+..+ +|++++++++.+.
T Consensus 124 lyt~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s 193 (876)
T KOG1041|consen 124 LYTKLELPEGVVTLDFDVISPK----------EWKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIAT 193 (876)
T ss_pred eEeccccccccceEEEEecCCC----------CCcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhc
Confidence 9997777742333333222211 11129999999887655444332 9999999999998
Q ss_pred CC-ccccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccHHHHHhhc-ccc---------
Q 035695 174 EK-HTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKL-DFF--------- 242 (548)
Q Consensus 174 ~~-~~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~l~~~-~~l--------- 242 (548)
.+ +..+|++||.....+...+++|.|+|.||++|+|+.+++++||+|+++++||++.++.++++.+ ++-
T Consensus 194 ~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~ 273 (876)
T KOG1041|consen 194 SQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRP 273 (876)
T ss_pred hhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccc
Confidence 76 9999999998632244558999999999999999999999999999999999999999999842 000
Q ss_pred --------ccC------------------------------CC-C-----------------------------------
Q 035695 243 --------FFS------------------------------DL-S----------------------------------- 248 (548)
Q Consensus 243 --------~~r------------------------------d~-~----------------------------------- 248 (548)
|++ +. .
T Consensus 274 ~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~~ 353 (876)
T KOG1041|consen 274 LDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRENF 353 (876)
T ss_pred hhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCcc
Confidence 110 00 0
Q ss_pred ---------------C-CCChH--------------HH-------------------hhccccccCCceEeceEecCCCe
Q 035695 249 ---------------R-PLSDQ--------------VR-------------------LKFGIQVADGLTSVDARILPAPM 279 (548)
Q Consensus 249 ---------------~-~Ls~~--------------~r-------------------~~~Gl~i~~~~~~v~arvL~~P~ 279 (548)
. .|++. +| ++|||.|.++|+.|+||+||||.
T Consensus 354 ~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~ 433 (876)
T KOG1041|consen 354 YPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPK 433 (876)
T ss_pred cchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCCce
Confidence 0 11211 11 79999999999999999999999
Q ss_pred EeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCCCchhHHHHHHHHHHHHHhcCCcccCCCccccccCChh
Q 035695 280 LKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPY 359 (548)
Q Consensus 280 i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~ 359 (548)
|.|+++ .....|..|.|++++++|+.|+.+..|+|++|..+.+...+.|++.|++.|++.||+|.. |.. ......
T Consensus 434 L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~~~f~~~L~~~c~~~Gm~i~~-~~~--~~~~~~ 508 (876)
T KOG1041|consen 434 LKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQKQFVDELIKICKDKGMEIKR-PRK--WAPTEE 508 (876)
T ss_pred eeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccHHHHHHHHHHHHHHcCccccc-ccc--cCcccc
Confidence 999986 234567899999999999999999999999997653222289999999999999999976 542 211123
Q ss_pred hHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhccCCe
Q 035695 360 QIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGR 438 (548)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~KLGG~ 438 (548)
.++..++.+...... ..++++++||++++..+ |+.+|++++...||+|||++.+++.+..+||++||+||||+||||+
T Consensus 509 ~~~~~~~~~~~~~~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~ 587 (876)
T KOG1041|consen 509 SLEDMITEKSSMEKA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGL 587 (876)
T ss_pred hhHHHHHHHHhhhcc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCce
Confidence 555555554443221 36799999999999999 9999999999999999999999999989999999999999999999
Q ss_pred eeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCC--CCeEEEEEEecCCCccccceeeeecccccchhhhccccccCC
Q 035695 439 NTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS--SPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQD 516 (548)
Q Consensus 439 n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~--~pSiaa~VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~ 516 (548)
|+.+..+.....| ....+|||||+|||||++++.. .|||||||||+|| +.++|.+.+++|.+++|+|+++
T Consensus 588 N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~------ 659 (876)
T KOG1041|consen 588 NYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL------ 659 (876)
T ss_pred eeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch------
Confidence 9988876322233 3468999999999999998754 5999999999997 9999999999999999999997
Q ss_pred CCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695 517 PQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 517 ~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY 548 (548)
.+|+.++|..|+++++.+|+|||||
T Consensus 660 -------~~~~~~~l~~f~~~t~~~P~~IIiy 684 (876)
T KOG1041|consen 660 -------GEMIRELLRSFRKSTRKLPDRIVIY 684 (876)
T ss_pred -------HHHHHHHHHHHHHhccCCCceEEEE
Confidence 9999999999999999999999998
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=6.2e-52 Score=439.00 Aligned_cols=265 Identities=43% Similarity=0.739 Sum_probs=227.6
Q ss_pred hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCCCc-----hhHHHHH
Q 035695 257 LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLN-----QDVIGFC 331 (548)
Q Consensus 257 ~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~-----~~~~~f~ 331 (548)
+.|||+|+++|++|+||+||||+|.|+++. ....+.+|+|++++.+|++++++++|++|++.++.+ +.+++|+
T Consensus 4 ~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F~ 81 (426)
T cd04657 4 KEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFV 81 (426)
T ss_pred HhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHHH
Confidence 479999999999999999999999999643 245677999999999999999999999998875422 2469999
Q ss_pred HHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeee
Q 035695 332 QRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQC 410 (548)
Q Consensus 332 ~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQc 410 (548)
+.|.+.|+.+||.+. .... ...+..+..++.+.+.. ...++|+|||+|+++.+ |+.||++||.+.||+|||
T Consensus 82 ~~l~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI~TQc 153 (426)
T cd04657 82 DQLVKTVIGAGINIT--TAIA---SVEGRVEELFAKLKQAK---GEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQC 153 (426)
T ss_pred HHHHHHHHhcCCccc--cccc---ccchhHHHHHHHHHhhc---cCCCCEEEEEEcCCCcchHHHHHHHHhhcCCcccEE
Confidence 999999999999986 2111 12234444444444432 14699999999998877 999999999999999999
Q ss_pred ecccccCC-CcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCC-CCCCeEEEEEEecCCC
Q 035695 411 CQPKHASS-RNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGE-DSSPSIVAVVASMDWP 488 (548)
Q Consensus 411 v~~~~~~k-~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~-~~~pSiaa~VaS~d~~ 488 (548)
|..+++.+ .+++++.||+||||+||||+||.++.. ..+++...+|||||+||+||++++ ...|||||+|||+| .
T Consensus 154 i~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d-~ 229 (426)
T cd04657 154 VLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVD-W 229 (426)
T ss_pred EcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecC-C
Confidence 99999976 789999999999999999999999875 233445689999999999999875 45799999999999 9
Q ss_pred ccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695 489 EVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 489 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY 548 (548)
++++|.+.+++|++++|++++| ++|++++|+.|++.||.+|++||||
T Consensus 230 ~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~Iiiy 276 (426)
T cd04657 230 HLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYY 276 (426)
T ss_pred cccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999999999999999998 9999999999999999999999998
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.2e-46 Score=402.26 Aligned_cols=260 Identities=24% Similarity=0.368 Sum_probs=223.3
Q ss_pred hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCcccc--ccceeecCcccceEEEEEeCCCCchhHHHHHHHH
Q 035695 257 LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNM--INKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRL 334 (548)
Q Consensus 257 ~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~--~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l 334 (548)
++|||+|+++|++|+||+|+||+|.|+++. ...+..|+|+. .+..|+.+.++.+|+++++. ...+.++.|++.|
T Consensus 39 ~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~W~vi~~~-~~~~~~~~f~~~l 114 (448)
T cd04658 39 KKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWKREIRNQPLYDAVNLNNWVLIYPS-RDQREAESFLQTL 114 (448)
T ss_pred HHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcchhhcCCcccCCcccCeEEEEEec-CCHHHHHHHHHHH
Confidence 789999999999999999999999999752 22356888875 45678999999999999875 4455679999999
Q ss_pred HHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecc
Q 035695 335 VDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 335 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.+.++++||.+..|..+.+...+.+++...|++... .+++|+|||+|++..+ |+.||++++.+.||+||||..
T Consensus 115 ~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~ 188 (448)
T cd04658 115 KQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITS 188 (448)
T ss_pred HHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEeh
Confidence 999999999998766555543334445445544443 5799999999998877 999999999999999999999
Q ss_pred cccCC--CcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccc
Q 035695 414 KHASS--RNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVT 491 (548)
Q Consensus 414 ~~~~k--~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~ 491 (548)
+++.+ +..+++.||++|||+||||+||.++.. .....+|||||+||+||+++ ..||+||+|||+| .+++
T Consensus 189 ~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~ 259 (448)
T cd04658 189 RTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSIT 259 (448)
T ss_pred hhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCc
Confidence 99976 467899999999999999999999853 23347999999999999874 4699999999999 9999
Q ss_pred cceeeeecccccchh-hhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695 492 KYRGLVSAQAHNEEI-IQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 492 ~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY 548 (548)
+|++.++.|..++|+ +++| ++|++++|..|++.||.+|++||||
T Consensus 260 ~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l~~y~~~~~~~P~~Iiiy 304 (448)
T cd04658 260 KWFSKYISQVRGQEEIIDSL-------------GKSMKKALKAYKKENKKLPSRIIIY 304 (448)
T ss_pred eEeeEEEEeCCCceeeHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 999999999999998 8878 9999999999999999999999998
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.1e-42 Score=365.39 Aligned_cols=240 Identities=28% Similarity=0.407 Sum_probs=201.2
Q ss_pred CceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCccc-ceEEEEEeCCCCchhHHHHHHHHHHHHHhcCCc
Q 035695 266 GLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRV-EVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMV 344 (548)
Q Consensus 266 ~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l-~~W~vv~~~~~~~~~~~~f~~~l~~~~~~~G~~ 344 (548)
.+++|+||+||||+|.|+++ |++++.+|..|+.+ .+|+++++.+ ...++|++.|.+.++++||.
T Consensus 1 ~~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~---~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN---EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred CceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc---HHHHHHHHHHHHHHHhCCCc
Confidence 36899999999999999651 99999999999998 9999998753 23468999999999999999
Q ss_pred ccC-CCccccccC--ChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCC--
Q 035695 345 FNR-RPVIPISSY--NPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASS-- 418 (548)
Q Consensus 345 i~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k-- 418 (548)
+.+ |+...+... +.+++...|+++.+ .+++|+|||+|+++.+ |+.||++++.+ ||+||||+.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~ 138 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIK------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMR 138 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhh------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhcccc
Confidence 987 444333222 23445555555443 5799999999998878 99999999988 99999999999976
Q ss_pred CcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCC-CCCCCeEEEEEEecCCCccccceeee
Q 035695 419 RNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPG-EDSSPSIVAVVASMDWPEVTKYRGLV 497 (548)
Q Consensus 419 ~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~-~~~~pSiaa~VaS~d~~~~~~y~~~~ 497 (548)
..+++++||++|||+||||+||.|+.+ .+...+|||||+||+|++++ ....||++|||||+| .+ +.+.+.+
T Consensus 139 ~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~ 210 (393)
T cd02826 139 RLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFL 210 (393)
T ss_pred ccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEE
Confidence 788999999999999999999999853 12347899999999999875 235799999999999 66 4445667
Q ss_pred ecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCC-CCCceEeC
Q 035695 498 SAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNR-KPESIIFY 548 (548)
Q Consensus 498 ~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~-lP~~IIiY 548 (548)
+.|..++|+++++ ++|++++|..|+++||. +|++||||
T Consensus 211 ~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~Iiiy 249 (393)
T cd02826 211 YVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIY 249 (393)
T ss_pred EEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEE
Confidence 8888888998888 99999999999999999 99999998
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.96 E-value=2.6e-29 Score=255.94 Aligned_cols=149 Identities=43% Similarity=0.705 Sum_probs=132.8
Q ss_pred EEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCC--cHHHHHHHHHHhhhccCCee-eeeccccccCCCCcCCC
Q 035695 381 LLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSR--NMQYFENVALKINVKVGGRN-TVLDDAVQKRIPLVTDR 456 (548)
Q Consensus 381 li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~--~~~~~~ni~lKiN~KLGG~n-~~l~~~~~~~~p~l~~~ 456 (548)
+||||+|+++.+ |+.+|++++.+.||+||||..+++.+. ..+++.||++|||+||||.| |.++... ..++ .
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~~--~~~~---~ 75 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSPP--SIDL---K 75 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCSS--GSSE---S
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccccc--cccc---C
Confidence 589999998888 999999999999999999999999877 57999999999999999995 5555321 1112 6
Q ss_pred CeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHH
Q 035695 457 PTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKI 536 (548)
Q Consensus 457 ~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~ 536 (548)
+|||||+||+|++++....||++|+|+|+| .+.++|.+.+..|..++|+++++ ++++.++|+.|++
T Consensus 76 ~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~ 141 (302)
T PF02171_consen 76 NTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKK 141 (302)
T ss_dssp EEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHH
Confidence 899999999999887545799999999999 99999999999999999999998 9999999999999
Q ss_pred HcCC-CCCceEeC
Q 035695 537 STNR-KPESIIFY 548 (548)
Q Consensus 537 ~ng~-lP~~IIiY 548 (548)
.|+. +|+|||||
T Consensus 142 ~~~~~~P~~Iiiy 154 (302)
T PF02171_consen 142 NNGKWLPERIIIY 154 (302)
T ss_dssp TTTT-TTSEEEEE
T ss_pred HcCCCCCceEEEE
Confidence 9997 99999998
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.85 E-value=4.4e-21 Score=202.87 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHhccCCCCCceEEEEEeCCCC------Cc-hhhhhhhcccccceeeeeecccccCCC--cHHHHHHHHH
Q 035695 359 YQIEKALVDVHNKTTQPGKQLQLLIIILPDVR------GS-YGRIKRVCETELGIVSQCCQPKHASSR--NMQYFENVAL 429 (548)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~------~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~--~~~~~~ni~l 429 (548)
+.+..+++.+.+++. .+++++||++|++. .+ |+.||+++ .+.||+||||..+++.+. ..+++.||++
T Consensus 94 ~~~~~a~~~~~~~~~---~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial 169 (404)
T cd04659 94 EAIIEAVDLALSESS---QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLAL 169 (404)
T ss_pred HHHHHHHHHHHHhhc---CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHH
Confidence 445556666655431 47899999999975 56 99999986 589999999999999754 6789999999
Q ss_pred HhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeecccccchhh--
Q 035695 430 KINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEII-- 507 (548)
Q Consensus 430 KiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~~~~E~i-- 507 (548)
|||+|+||+||.|+.. ...+|||||+||+|+..+. .+++|++...| .+.. +.+..+.+.++.+
T Consensus 170 ~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~---~~~~~~a~vf~-~~g~---g~~~~~~~~~~~~~~ 234 (404)
T cd04659 170 ALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGE---VRVTGCAQVFD-SDGL---GLILRGAPIEEPTED 234 (404)
T ss_pred HHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCC---EEEEEEEEEEc-CCCC---EEEEecCccCCcccc
Confidence 9999999999999842 2368999999999997642 22233333333 3321 1122222222222
Q ss_pred ---hccccccCCCCCCcchhhHHHHHHHHHHHHcCC-CCCceEeC
Q 035695 508 ---QDLYKSIQDPQRGLVHGGMIRELLIAFKISTNR-KPESIIFY 548 (548)
Q Consensus 508 ---~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~-lP~~IIiY 548 (548)
+++ .++++++|..|++.++. +|+|||||
T Consensus 235 ~~~~~~-------------~~~l~~~l~~y~~~~~~~~P~rIiih 266 (404)
T cd04659 235 RSPADL-------------KDLLKRVLEGYRESHRGRDPKRLVLH 266 (404)
T ss_pred cCHHHH-------------HHHHHHHHHHHHHHcCCCCCeEEEEE
Confidence 234 99999999999999988 99999997
No 9
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.63 E-value=1.6e-16 Score=116.01 Aligned_cols=52 Identities=56% Similarity=0.919 Sum_probs=42.2
Q ss_pred cccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeecc
Q 035695 177 TVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNL 229 (548)
Q Consensus 177 ~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~ 229 (548)
+.+||+||+++.+ ..+|++|+|+|+|||+||||+.++|+||+|+|+++||++
T Consensus 1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 3689999998743 378999999999999999999999999999999999974
No 10
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.026 Score=60.16 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=107.8
Q ss_pred ecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEE---EeCCCCchhHHHHHHHHHHHHHhcC-CcccC-C
Q 035695 274 ILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCM---NFSTCLNQDVIGFCQRLVDMCNRKG-MVFNR-R 348 (548)
Q Consensus 274 vL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv---~~~~~~~~~~~~f~~~l~~~~~~~G-~~i~~-~ 348 (548)
.-.+|.|..++.++. ..-+..-|+. ..++.|.....|.-+ +.++........+.+.+....+..+ +...- -
T Consensus 306 ~ek~pdiv~g~~gkt--ti~n~nl~~y--lpy~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg 381 (685)
T COG1431 306 PEKGPDIVIGTEGKT--TIDNVNLFCY--LPYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEG 381 (685)
T ss_pred cccCCceEeccccee--eEehhhhhhh--hcccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhccc
Confidence 345556666553321 1112233332 123344334455432 1233333344788888888887776 43211 1
Q ss_pred CccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHHHHHHH
Q 035695 349 PVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENV 427 (548)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni 427 (548)
+.+.+-+.++.. .+.|..+.+++ ....+...-+-++.. |+.+|+ .+.-|++|.++-.+..+.-..+++|+
T Consensus 382 ~~l~~a~~r~~~-kddl~~iIkei-----d~ee~~k~e~ykdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tnl 452 (685)
T COG1431 382 LTLHVAGKRPKM-KDDLTKIIKEI-----DVEELKKQEMYKDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTNL 452 (685)
T ss_pred ceeeecccchhh-hccchhhhhhh-----hhhhhccccccccchHHHHHHh---hcccCcceeeeccccCCcchhhhhHH
Confidence 222222222211 12233333332 122233333445555 999998 45689999999999988888899999
Q ss_pred HHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecC
Q 035695 428 ALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMD 486 (548)
Q Consensus 428 ~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d 486 (548)
+.|+-||-+|+++.+... .-| -+-|+|+||+.-.-| ...+-|++...|
T Consensus 453 a~~~~~ktlgqpY~~r~~---~gp-----vDaivGlDvsr~~~g---n~tV~gct~~f~ 500 (685)
T COG1431 453 ASKRYLKTLGQPYLKRNG---LGP-----VDAIVGLDVSRVSEG---NWTVEGCTSCFV 500 (685)
T ss_pred HHHHHHHhcCCceeeecc---CCC-----ccceeeeeeeEEeeC---CeEEeeeeEEEe
Confidence 999999999999998754 122 358999999987643 345555444444
No 11
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=67.30 E-value=6.5 Score=25.67 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCCCceEe
Q 035695 528 RELLIAFKISTNRKPESIIF 547 (548)
Q Consensus 528 ~~~L~~y~~~ng~lP~~IIi 547 (548)
..++..|++.||++|..|-|
T Consensus 14 a~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 14 ASRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHHcCCCCCeeeC
Confidence 46778999999999998743
No 12
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=66.68 E-value=15 Score=35.24 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=39.9
Q ss_pred CCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeecccccchhhhccccccCCCCCCcchhhH--HHHHHHH
Q 035695 456 RPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGM--IRELLIA 533 (548)
Q Consensus 456 ~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~--~~~~L~~ 533 (548)
.+.+|-|+|++|... +.-.+|++|. ++|++..-....++...-....|..+ ..+.|+ +.++++.
T Consensus 24 ~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~~PYIPG~----------LafRE~p~l~~~~~~ 89 (208)
T cd06559 24 EVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGEVTFPYIPGL----------LAFREGPPLLEALEK 89 (208)
T ss_pred CccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEecCCCCcchh----------HHHhhHHHHHHHHHh
Confidence 567999999999852 2456666664 45555544444444333222223322 022444 4444433
Q ss_pred HHHHcCCCCCceEe
Q 035695 534 FKISTNRKPESIIF 547 (548)
Q Consensus 534 y~~~ng~lP~~IIi 547 (548)
. ..+|+-|+|
T Consensus 90 l----~~~PDlilV 99 (208)
T cd06559 90 L----KTKPDLLLV 99 (208)
T ss_pred C----CCCCCEEEE
Confidence 3 368888876
No 13
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=52.89 E-value=29 Score=31.55 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccc-cceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 035695 456 RPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVT-KYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAF 534 (548)
Q Consensus 456 ~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~-~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y 534 (548)
.|.-|-++|+||-.. .-.|+++|.=.| ..+. +.|=.+.+... +-.+| -.+|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dD--------------y~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDD--------------YAAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-H--------------HHHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcH--------------HHHHHHHHHHH
Confidence 467899999999852 457888887666 4432 22223344321 11123 23445555554
Q ss_pred HH----HcCCCCCceEe
Q 035695 535 KI----STNRKPESIIF 547 (548)
Q Consensus 535 ~~----~ng~lP~~IIi 547 (548)
++ ....+|+-|+|
T Consensus 69 ~~~~~~~~~~lPDLilI 85 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI 85 (155)
T ss_dssp HCCCHHHT----SEEEE
T ss_pred HhcccccCCCCCCEEEE
Confidence 43 33479998886
No 14
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=51.29 E-value=29 Score=29.86 Aligned_cols=57 Identities=25% Similarity=0.259 Sum_probs=37.0
Q ss_pred CCCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 376 GKQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 376 ~~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
+..|.|+++...++... |...|...+.+.||.+..+.... .....-+...+.++|.-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 35688888888876554 99888888889999999987742 23455667777888764
No 15
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.34 E-value=77 Score=31.87 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|+++...++.++ |...|...+.+.||.+..+....- ....=+.+.+.++|.
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 29 IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNH 85 (282)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 4566666666655444 776666666677777766655421 111223455555554
No 16
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.13 E-value=88 Score=31.69 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+..++.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 31 LFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPST--ISESSLIEKINELNND 88 (294)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4567777766665544 877777777778888877766421 1222344555566544
No 17
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.19 E-value=88 Score=31.50 Aligned_cols=56 Identities=23% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
..|.|.++...++.++ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 31 ITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPA--DATQEELNAVIDELNAD 88 (284)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3566766666655444 77777666667777776665432 11122233455566544
No 18
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.50 E-value=96 Score=31.53 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=18.5
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+..
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 70 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRL 70 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555555544333 555555555555655544443
No 19
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.75 E-value=1e+02 Score=31.03 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|+++...++..+ |...|...+.+.||.+..+..
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 67 (282)
T PRK14169 30 TPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRL 67 (282)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555555554433 666665555566666655544
No 20
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.32 E-value=1.1e+02 Score=30.96 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|.++...++..+ |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 31 ASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLST--TIHTNDLISKINELNL 87 (288)
T ss_pred CCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 4566766666665444 77666666667777777665532 1122233455555544
No 21
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.16 E-value=1.2e+02 Score=30.65 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=38.5
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccc-cCCCcHHHHHHHHHHhhhc--cCCeeeeec
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKH-ASSRNMQYFENVALKINVK--VGGRNTVLD 443 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~-~~k~~~~~~~ni~lKiN~K--LGG~n~~l~ 443 (548)
..|.|.++...++..+ |..+|.....+.||.+..+.... + ...-+..++.++|.. .-|+|..+.
T Consensus 32 ~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~~v~Gi~VqlP 100 (283)
T PRK14192 32 RTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANPDVHGILLQHP 100 (283)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 4567777766665544 88877777777888777776631 1 122244556666654 456655443
No 22
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.12 E-value=1e+02 Score=30.98 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
..|.|.++...++.++ |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPS--TISQKEILETIAMMNNN 87 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 4677877777776554 88888888888898887776532 11222345666677643
No 23
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.94 E-value=1.1e+02 Score=30.90 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.+++.++|.
T Consensus 30 ~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (282)
T PRK14180 30 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNN 86 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 3466666666655444 776666666677777766654321 112223345555553
No 24
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.30 E-value=1.4e+02 Score=30.23 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=33.4
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|+++...++.++ |...|...+.+.||.+-.+.... .....-+.+.+.++|.
T Consensus 37 ~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 37 ITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPA--DTTQEELLELIDSLNK 93 (287)
T ss_pred CCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 4567777766665544 77777777777888776665542 1122334455566665
No 25
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.66 E-value=1e+02 Score=31.27 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.+.+.++|.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (293)
T PRK14185 30 KRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESD--VTEEELLAKVRELNQ 86 (293)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 4567766666665444 777777667777777776655321 112223345556654
No 26
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.60 E-value=1.2e+02 Score=30.65 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeeccc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPK 414 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~ 414 (548)
..|.|+++...++..+ |...|...+.+.||.+-.+...
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~ 70 (284)
T PRK14190 31 IVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFP 70 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3456666555554433 6666665666666666655443
No 27
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.17 E-value=1.1e+02 Score=30.66 Aligned_cols=37 Identities=32% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
..|.|.++...++..+ |...|...+.+.||.+-.+..
T Consensus 29 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 67 (282)
T PRK14182 29 VQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHL 67 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3455666555554433 666665556666666655544
No 28
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.53 E-value=1.2e+02 Score=30.51 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeeccc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPK 414 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~ 414 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+...
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~ 69 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELP 69 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 455555555554433 6666655555666666555443
No 29
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.77 E-value=1.3e+02 Score=30.52 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=10.7
Q ss_pred chhhHHHHHHHHHHHHcC
Q 035695 522 VHGGMIRELLIAFKISTN 539 (548)
Q Consensus 522 ~~~~~~~~~L~~y~~~ng 539 (548)
+...+|+..++.+++.++
T Consensus 274 T~a~L~~N~~~a~~~~~~ 291 (297)
T PRK14167 274 TRAMLLYNTVKAASLQEG 291 (297)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 345566677777655443
No 30
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.12 E-value=1.3e+02 Score=30.46 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeeccc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPK 414 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~ 414 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+...
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~ 70 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLE 70 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 455655555554433 6666666666666666555443
No 31
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.99 E-value=1.4e+02 Score=30.02 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|.++...++..+ |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPA--DTTQEELEDLIAELNA 86 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 3466666666655444 77666666667777776655432 1112233455555654
No 32
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.86 E-value=1.4e+02 Score=30.32 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
..|.|+++...++.++ |...|...+.+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (295)
T PRK14174 30 KVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPAD--TTEEHLLKKIEDLNND 87 (295)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 3566766666665444 777777677777777766655421 1122233455566543
No 33
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.58 E-value=1.5e+02 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+..
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l 69 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKL 69 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 456666655555443 666666666666666555543
No 34
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.45 E-value=1.7e+02 Score=29.56 Aligned_cols=36 Identities=28% Similarity=0.170 Sum_probs=18.6
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|.++...++..+ |...|...+.+.||.+-.+..
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 69 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRY 69 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555555444333 555555555555665544443
No 35
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.86 E-value=1.5e+02 Score=29.93 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
.|.|+++...++.++ |...|...+.+.||.+..+.... .....=+...+.++|.-
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 33 APGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPE--TTSEAELLALIDELNAD 89 (285)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 466666666555444 77777666667777776665532 11122233455566544
No 36
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.47 E-value=1.6e+02 Score=29.89 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+..
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l 69 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHL 69 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555555544333 666655555566666655544
No 37
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=27.41 E-value=1.8e+02 Score=29.59 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
..|.|+++...++..+ |...|...+.+.||.+-.+..
T Consensus 38 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 76 (299)
T PLN02516 38 KVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDL 76 (299)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3456666655554443 766666666667776666554
No 38
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.24 E-value=1.8e+02 Score=29.21 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=31.4
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVK 434 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~K 434 (548)
.|.|.++...++.++ |...|...+.+.||.+..+....- ....-+.+.+.++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~d 88 (278)
T PRK14172 32 IPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDES--ISEEDLINEIEELNKD 88 (278)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 366766666665544 777766666677877766655321 1112234555666554
No 39
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.05 E-value=46 Score=18.30 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=10.9
Q ss_pred CCCccCCCCCCCCC
Q 035695 26 SRAVRLPVRPGFGT 39 (548)
Q Consensus 26 ~~~~~~~~RP~~Gt 39 (548)
|+...+|.||..|.
T Consensus 2 Sk~WvlPprpkpgR 15 (17)
T PF10297_consen 2 SKNWVLPPRPKPGR 15 (17)
T ss_pred CcccccCCCCCCCC
Confidence 56778999998774
No 40
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.27 E-value=1.8e+02 Score=30.07 Aligned_cols=19 Identities=37% Similarity=0.242 Sum_probs=8.3
Q ss_pred hhhhhhhcccccceeeeee
Q 035695 393 YGRIKRVCETELGIVSQCC 411 (548)
Q Consensus 393 Y~~iK~~~d~~~gI~TQcv 411 (548)
|...|...+.+.||.+..+
T Consensus 103 Yv~~k~K~a~~~GI~~~~~ 121 (345)
T PLN02897 103 YVRNKIKACEETGIKSLLA 121 (345)
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 4444444444444444443
No 41
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.91 E-value=2.1e+02 Score=28.83 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=18.7
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|.++...++..+ |...|...+.+.||.+-.+..
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 69 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRL 69 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555555544433 655555555556665554444
No 42
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.45 E-value=1.9e+02 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=19.8
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeec
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQ 412 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~ 412 (548)
.|.|+++...++..+ |...|...+.+.||.+-.+.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~ 69 (297)
T PRK14168 33 VPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDN 69 (297)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 455665555554433 66666666666666655543
No 43
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.81 E-value=2.2e+02 Score=28.72 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=8.3
Q ss_pred chhhHHHHHHHHHHHH
Q 035695 522 VHGGMIRELLIAFKIS 537 (548)
Q Consensus 522 ~~~~~~~~~L~~y~~~ 537 (548)
+...+|+..++.+.+.
T Consensus 266 T~a~L~~N~~~a~~~~ 281 (287)
T PRK14173 266 TVAMLMANTVIAALRR 281 (287)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555666665443
No 44
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.80 E-value=2.1e+02 Score=29.83 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
..|.|+++...++.++ |...|...+.+.||.+..+.... .....=+.+.+.++|.
T Consensus 102 ~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe--~~te~ell~~I~~LN~ 158 (364)
T PLN02616 102 VVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPE--DSTEQEVLKFISGFNN 158 (364)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 4567777777766554 88777777777888876665331 1122233455555554
No 45
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.13 E-value=2.6e+02 Score=28.06 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=14.9
Q ss_pred ceEEEEEeCCCCCc--hhhhhhhcccccceeeeeec
Q 035695 379 LQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQ 412 (548)
Q Consensus 379 ~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~ 412 (548)
|.|+++...++.++ |...|...+.+.||.+..+.
T Consensus 27 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~ 62 (279)
T PRK14178 27 PRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIE 62 (279)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEE
Confidence 44444444443332 44444444444455444443
No 46
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.23 E-value=2.5e+02 Score=28.35 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=18.4
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
.|.|.++...++..+ |...|...+.+.||.+-.+..
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 68 (285)
T PRK14191 31 RPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTL 68 (285)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 445555544444333 555555555555655554444
No 47
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.92 E-value=2.5e+02 Score=28.26 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh--ccCCeee
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV--KVGGRNT 440 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~--KLGG~n~ 440 (548)
.|.|+++...++.++ |...|...+.+.||.+..+.... .....-+.+.+.++|. ..-|+-.
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKE--QTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 466766666665444 77776666667777777766532 1122334455566665 3344443
No 48
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.73 E-value=2.8e+02 Score=28.01 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=14.6
Q ss_pred ceEEEEEeCCCCCc--hhhhhhhcccccceeeeeec
Q 035695 379 LQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQ 412 (548)
Q Consensus 379 ~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~ 412 (548)
|.|+++...++..+ |...|...+.+.||.+-.+.
T Consensus 27 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~ 62 (287)
T PRK14181 27 PGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHR 62 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 44444444433322 44444444444444444433
Done!