Query 035695
Match_columns 548
No_of_seqs 173 out of 1006
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 1.1E-94 3.9E-99 818.6 45.5 500 18-548 14-669 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 8.5E-80 2.9E-84 696.9 35.0 499 24-548 12-839 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 7.5E-52 2.6E-56 456.9 27.2 395 97-548 48-569 (706)
4 1u04_A Argonaute, hypothetical 100.0 2E-46 6.8E-51 413.5 27.8 421 43-548 3-627 (771)
5 2yha_A Post-transcriptional ge 100.0 3.5E-45 1.2E-49 380.1 16.6 224 300-548 2-242 (388)
6 3ho1_A Argonaute; argonaute, p 100.0 9.2E-42 3.1E-46 370.2 35.7 432 43-548 6-544 (685)
7 2yhb_A QDE-2, post-transcripti 100.0 5.5E-44 1.9E-48 375.9 16.1 224 300-548 2-242 (437)
8 4g0o_A Protein argonaute 5; MI 100.0 7.4E-30 2.5E-34 227.6 12.3 137 302-442 2-139 (139)
9 4g0x_A Protein argonaute 1; MI 100.0 7E-30 2.4E-34 230.1 11.6 141 302-442 2-147 (147)
10 3luc_A Protein argonaute-2; MI 100.0 1.9E-28 6.5E-33 218.3 11.4 134 301-439 1-138 (138)
11 4g0m_A Protein argonaute 2; MI 99.9 3.1E-28 1.1E-32 220.1 7.9 141 302-442 2-150 (150)
12 2w42_A PIWI, putative uncharac 99.9 1.1E-26 3.9E-31 244.2 5.3 228 274-548 5-254 (427)
13 3p2o_A Bifunctional protein fo 33.4 83 0.0028 30.3 6.9 65 377-443 32-100 (285)
14 3u85_B Histone-lysine N-methyl 27.9 26 0.0009 19.1 1.2 9 29-37 3-11 (21)
15 4b4u_A Bifunctional protein fo 24.9 1.2E+02 0.0042 29.4 6.4 37 377-413 52-90 (303)
16 3c65_A Uvrabc system protein C 24.0 2.7E+02 0.0091 25.7 8.3 29 457-490 14-42 (226)
17 2c2x_A Methylenetetrahydrofola 23.4 1E+02 0.0035 29.6 5.5 54 378-433 32-87 (281)
18 2l69_A Rossmann 2X3 fold prote 22.3 2.1E+02 0.0072 22.3 6.0 58 315-389 4-61 (134)
19 3nqi_A Putative lipoprotein; s 21.4 42 0.0014 31.4 2.2 20 528-547 197-217 (246)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1.1e-94 Score=818.64 Aligned_cols=500 Identities=37% Similarity=0.613 Sum_probs=409.3
Q ss_pred CCcCCCCCCCCccCCCCCCCCCCCCeEEEEeeEEEEEcCCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhccCCCCc
Q 035695 18 AATLPPSSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERI 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~l~~~~~~iy~Y~V~i~p~~~~r~~~r~ii~~l~~~~~~~~~~~~~ 97 (548)
.+.+||+++....+|+||++||.|++|.|+||||+++++++.+|||||+|+|+..+++++++++++++++++.+.|++..
T Consensus 14 ~~~~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~ 93 (861)
T 4f3t_A 14 PAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRK 93 (861)
T ss_dssp -----------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCC
T ss_pred CCCCCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCce
Confidence 44556777788999999999999999999999999999888899999999999989999999999999887544577767
Q ss_pred eeeeCCCcEEecCCCCCCCceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHH------------HHHHH
Q 035695 98 PAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKF------------IQVLD 165 (548)
Q Consensus 98 ~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~------------iq~ln 165 (548)
++|||+++|||+.+|++++.++++.+.... ..+++.|+|+|++++++++++|.+| ||+||
T Consensus 94 ~afDG~~~l~s~~~L~~~~~~~~~~v~~~~--------~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Ln 165 (861)
T 4f3t_A 94 PVFDGRKNLYTAMPLPIGRDKVELEVTLPG--------EGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALD 165 (861)
T ss_dssp CEECSSSEEEESSCCSCSSCEEEEECCC---------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred EEEcCcceEEECCcCCCCCcceEEEEecCC--------CCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 899999999999999976544444332111 1356889999999999999887765 99999
Q ss_pred HHHhcCCCCCccccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccHHHHHhhc-c----
Q 035695 166 VVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKL-D---- 240 (548)
Q Consensus 166 iilr~~~~~~~~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~l~~~-~---- 240 (548)
||||+.++.++..+||+||++..+...++++|+|+|+||++|||+++++++||+|++|++|+++++|+|+|.++ +
T Consensus 166 iilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~ 245 (861)
T 4f3t_A 166 VVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSI 245 (861)
T ss_dssp HHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSC
T ss_pred HHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccch
Confidence 99999888889999999999875445678999999999999999999999999999999999999999999631 0
Q ss_pred ------------------cccc-----------C--------------------------------------------CC
Q 035695 241 ------------------FFFF-----------S--------------------------------------------DL 247 (548)
Q Consensus 241 ------------------~l~~-----------r--------------------------------------------d~ 247 (548)
+.|+ | ++
T Consensus 246 ~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p 325 (861)
T 4f3t_A 246 EEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYP 325 (861)
T ss_dssp C---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCT
T ss_pred hhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCC
Confidence 0010 0 00
Q ss_pred -----------------------------CCCCChHHH---------------------------------hhccccccC
Q 035695 248 -----------------------------SRPLSDQVR---------------------------------LKFGIQVAD 265 (548)
Q Consensus 248 -----------------------------~~~Ls~~~r---------------------------------~~~Gl~i~~ 265 (548)
.++|+++++ +.|||+|++
T Consensus 326 ~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~ 405 (861)
T 4f3t_A 326 HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKD 405 (861)
T ss_dssp TSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECS
T ss_pred CCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeC
Confidence 125666543 689999999
Q ss_pred CceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCC---CchhHHHHHHHHHHHHHhcC
Q 035695 266 GLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTC---LNQDVIGFCQRLVDMCNRKG 342 (548)
Q Consensus 266 ~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~---~~~~~~~f~~~l~~~~~~~G 342 (548)
+|++|+||+||||+|.|+++++ ..+.|.+|+|++++++|++++++++|++++++.. ..+.+++|++.|.+.|+.+|
T Consensus 406 ~~~~v~gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G 484 (861)
T 4f3t_A 406 EMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAG 484 (861)
T ss_dssp SCEEEEEEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987532 2356789999999999999999999999998632 23345999999999999999
Q ss_pred CcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcH
Q 035695 343 MVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNM 421 (548)
Q Consensus 343 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~ 421 (548)
|++..+|.+.....+.+.++..++.+.+.. .+++|||||+|++ .+ |+.||++||+++||+||||+.+++.|.++
T Consensus 485 ~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~ 559 (861)
T 4f3t_A 485 MPIQGQPCFCKYAQGADSVEPMFRHLKNTY----AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTP 559 (861)
T ss_dssp CCBCSCCSEEEECCSSSSHHHHHHHHHHHS----TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCH
T ss_pred cccCCCCeEEEecCchHHHHHHHHHHHhhc----CCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccH
Confidence 999865654222222456777777776643 5789999999965 56 99999999999999999999999988899
Q ss_pred HHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeeccc
Q 035695 422 QYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQA 501 (548)
Q Consensus 422 ~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~ 501 (548)
||+.||+||||+||||+||.+.+. ..|.+...+|||||+||+||++++...|||||||||+| .++++|++.+++|.
T Consensus 560 q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~ 635 (861)
T 4f3t_A 560 QTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQ 635 (861)
T ss_dssp HHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEES
T ss_pred HHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcC
Confidence 999999999999999999998764 24555568999999999999988656899999999999 79999999999999
Q ss_pred ccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695 502 HNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 502 ~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY 548 (548)
+++|+|++| ++|+.++|+.|++.||.+|+|||||
T Consensus 636 ~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~Iiiy 669 (861)
T 4f3t_A 636 HRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFY 669 (861)
T ss_dssp TTCCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred CCccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 999999999 9999999999999999999999998
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=8.5e-80 Score=696.86 Aligned_cols=499 Identities=19% Similarity=0.263 Sum_probs=374.3
Q ss_pred CCCCCccCCCCCCCCCCCCeEEEEeeEEEEEcCCc---------------------ceEEEEEEecCCCC----------
Q 035695 24 SSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKR---------------------DIHHYDVSIDPEVT---------- 72 (548)
Q Consensus 24 ~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~l~~~~~---------------------~iy~Y~V~i~p~~~---------- 72 (548)
.+.....+|.||+|||.|++|.|+||||.|.+++. .||+|+|+|.|+..
T Consensus 12 ~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~ 91 (1046)
T 4f1n_A 12 DTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVP 91 (1046)
T ss_dssp CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC--------------
T ss_pred CccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCc
Confidence 35567789999999999999999999999999644 89999999998643
Q ss_pred ----chHHHHHHHHHHHHH--hhhccCCCCceeeeCCCcEEecCCCC---CCCceEEEEcC-----CCCCCCCC----C-
Q 035695 73 ----SQKINREIISQLINL--YRLTNLGERIPAYDGMKSIYTAGPLP---FESKEFIITLP-----DSDPRPSS----S- 133 (548)
Q Consensus 73 ----~r~~~r~ii~~l~~~--~~~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~~~~----~- 133 (548)
+++.+++||..|+++ +.. .++. .+||||+++|||..+|+ +....|.|.+. ++.+++++ +
T Consensus 92 ~~~~~~~k~~~ii~~ll~e~~~~~-~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 169 (1046)
T 4f1n_A 92 PQELSKPKKYELIEALLDEDEILY-KYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQ 169 (1046)
T ss_dssp ---CCHHHHHHHHHHHHHSCTTTG-GGTT-SEEECSSSEEEESSCGGGSTTCTTCCC-----------------------
T ss_pred ccccchhHHHHHHHHHHHhcchhh-hcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCccccccccccc
Confidence 245778899999986 222 2555 69999999999999999 44456777766 32221110 0
Q ss_pred ---CCCCCCceEEEEEEeccccChhhHHHH-----------------HHHHHHHHhcCCCCC---ccccccc-cccCCC-
Q 035695 134 ---ASPGTERQFRVVIRLASQPYVYTLQKF-----------------IQVLDVVLRAAPSEK---HTVVGRS-FFSTDL- 188 (548)
Q Consensus 134 ---~~~~~~~~~~V~i~~~~~i~~~~l~~~-----------------iq~lniilr~~~~~~---~~~vGr~-ff~~~~- 188 (548)
....++..|.|+|+++++|++++|.+| +++|+++|++.+... ...+|++ ||..+.
T Consensus 170 ~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~ 249 (1046)
T 4f1n_A 170 KKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNF 249 (1046)
T ss_dssp --------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTT
T ss_pred ccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCC
Confidence 123567889999999999988876544 889999999988543 2556655 886553
Q ss_pred CCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeecc-----------------ccHHHHHhhcc-----------
Q 035695 189 GPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNL-----------------MLLIFILSKLD----------- 240 (548)
Q Consensus 189 ~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~-----------------~~l~d~l~~~~----------- 240 (548)
+...+|++|+|+|+|||+|||++.++|+||||+++++||+. ++|+|+|.++-
T Consensus 250 ~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~ 329 (1046)
T 4f1n_A 250 AKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRY 329 (1046)
T ss_dssp CCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSC
T ss_pred CccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccc
Confidence 24678999999999999999999999999999999999985 68999864210
Q ss_pred -----------------------------------ccc-------------c-CC-CCCC--------------------
Q 035695 241 -----------------------------------FFF-------------F-SD-LSRP-------------------- 250 (548)
Q Consensus 241 -----------------------------------~l~-------------~-rd-~~~~-------------------- 250 (548)
.++ . +. .+.|
T Consensus 330 ~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~ 409 (1046)
T 4f1n_A 330 NPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKK 409 (1046)
T ss_dssp TTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC----------
T ss_pred cccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccc
Confidence 011 0 00 0000
Q ss_pred ------------CChHH------------------------------------------------------------H--
Q 035695 251 ------------LSDQV------------------------------------------------------------R-- 256 (548)
Q Consensus 251 ------------Ls~~~------------------------------------------------------------r-- 256 (548)
.|-.+ |
T Consensus 410 ~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~~~ylPmElC~I~pGQr~~kKL~~ts~MIKfAa~rP~eR~~ 489 (1046)
T 4f1n_A 410 NSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGKNDVVPPECLTIVPGQKLKGQIFDTKTYIDFSAIRPTEKFD 489 (1046)
T ss_dssp -------------CHHHHHHHHSCCCCSCTTSCCEECSTTTCEECGGGCCBCTTCBCCSCCCCHHHHHHHHCCCHHHHHH
T ss_pred cccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCCCcccccceEEecCCcccccccccHHHHHHHHccCcHHHHH
Confidence 01000 0
Q ss_pred ----------------------hhccccccCCceEeceEecCCCeEeeccCCcc-------eeecCCCCccccccceeec
Q 035695 257 ----------------------LKFGIQVADGLTSVDARILPAPMLKYHKSGRE-------ASVNPDFGQWNMINKKMFN 307 (548)
Q Consensus 257 ----------------------~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~-------~~~~~~~g~W~~~~~~f~~ 307 (548)
+.|| +|+++|++|+|||||||+|.|+++... ....+++|.|||++.+|++
T Consensus 490 ~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~ 568 (1046)
T 4f1n_A 490 LISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFIS 568 (1046)
T ss_dssp HHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTCCCSB
T ss_pred HHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCCEEec
Confidence 3699 999999999999999999999874211 0134678999999999999
Q ss_pred Ccc-cceEEEEEeCCC--Cc-----hhHHHHHHHHHHHHHhcCCcccCC--Cccc---------cccCC-----------
Q 035695 308 GGR-VEVWTCMNFSTC--LN-----QDVIGFCQRLVDMCNRKGMVFNRR--PVIP---------ISSYN----------- 357 (548)
Q Consensus 308 ~~~-l~~W~vv~~~~~--~~-----~~~~~f~~~l~~~~~~~G~~i~~~--~~~~---------~~~~~----------- 357 (548)
|+. +.+|.++++... .. +....|++.|.+.|+++||.+..+ |.+. +....
T Consensus 569 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 648 (1046)
T 4f1n_A 569 TPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRG 648 (1046)
T ss_dssp CCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------------
T ss_pred CCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccccccccccccc
Confidence 874 567766654321 11 245899999999999999999763 3210 00000
Q ss_pred ---------------hhhHHHHHHHHHHhccCCCCCceEEEEEeCCC-CCc-hhhhhhhcccccceeeeeecccccCCCc
Q 035695 358 ---------------PYQIEKALVDVHNKTTQPGKQLQLLIIILPDV-RGS-YGRIKRVCETELGIVSQCCQPKHASSRN 420 (548)
Q Consensus 358 ---------------~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~-~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~ 420 (548)
..+.+..|..+++++ .+++|||||||++ +.+ |+.||++||+++||+||||+.+++.|.+
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~ 724 (1046)
T 4f1n_A 649 GRGGRGAPSGPPTFETSPGEISLLNLLENI----PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNS 724 (1046)
T ss_dssp -----------CCCBCCTTHHHHHHHHHTC----CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCC
T ss_pred ccccccccccccccccchHHHHHHHHHHhc----CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhcccc
Confidence 023456677777755 5789999999998 566 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCeeeeeccccccCCCCcC----CCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceee
Q 035695 421 MQYFENVALKINVKVGGRNTVLDDAVQKRIPLVT----DRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGL 496 (548)
Q Consensus 421 ~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~----~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~ 496 (548)
+||++||+||||+||||+||.|+.. .++++. ..+|||||+||+|++++ ..+||||||||+| .++++|++.
T Consensus 725 ~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~~~t~y~s~ 798 (1046)
T 4f1n_A 725 IQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-DKFTQFPGD 798 (1046)
T ss_dssp HHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-SSCCCCCEE
T ss_pred HHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-CCcCeEeeE
Confidence 9999999999999999999999864 234442 34699999999995333 2569999999999 899999999
Q ss_pred eecccc-cchhhhccccccCCCCCCcchhhHHHHHHHHHHHH-cCCCCCceEeC
Q 035695 497 VSAQAH-NEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIS-TNRKPESIIFY 548 (548)
Q Consensus 497 ~~~Q~~-~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~-ng~lP~~IIiY 548 (548)
+++|.+ ++|+|++| ++|+.++|+.|++. ||.+|+|||||
T Consensus 799 ~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiY 839 (1046)
T 4f1n_A 799 YMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYF 839 (1046)
T ss_dssp EEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEE
T ss_pred EEEecCCCccHHHHH-------------HHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 999998 99999999 99999999999998 78999999998
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=7.5e-52 Score=456.92 Aligned_cols=395 Identities=14% Similarity=0.132 Sum_probs=289.6
Q ss_pred ceeeeCCCcEEecCCCCCCCceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccC----hhhHHHHHHHHHHHHhcCC
Q 035695 97 IPAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPY----VYTLQKFIQVLDVVLRAAP 172 (548)
Q Consensus 97 ~~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~----~~~l~~~iq~lniilr~~~ 172 (548)
.+-|-.....|+.++...+.. -.+..+ +. .|+|++++++. .++.+. +|++++++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 108 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEKDTL--YLTLSN-------------GE--IVELKRVGEEEFRGFQNEREC-QELFRDFLTKT- 108 (706)
T ss_dssp SCEEEETTEEEESSCCTTCCC--EEEECS-------------SS--CEEEEECCCEECCCCSCHHHH-HHHHHHHHHHT-
T ss_pred CccccccccceeccccccceE--EEEcCC-------------CC--EEEEEEEEEeeccCCCCCHHH-HHHHHHHHHHc-
Confidence 345555678888888764432 233222 22 57799999998 777777 99999999988
Q ss_pred CCCccccccccccCCCCCCccC---CCcEEEEEeeeeeeeccc-ceeEEEeecceeeeeccccHHHHHhhcc--------
Q 035695 173 SEKHTVVGRSFFSTDLGPMGQL---GDGIEYWRGYFQSLRPTQ-FGLSLNIGFSHYILYNLMLLIFILSKLD-------- 240 (548)
Q Consensus 173 ~~~~~~vGr~ff~~~~~~~~~l---~~gle~~~G~~~Svr~~~-~~l~LniD~s~~~f~~~~~l~d~l~~~~-------- 240 (548)
..++.++||+||++. .+..+ .++||+||||.+||+..+ ++++||+|++|++ .+.+||+|+|.++.
T Consensus 109 ~l~~~~igr~~~~~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKv-lr~~Tvld~l~~~~~~~~~~~~ 185 (706)
T 1yvu_A 109 KVKDKFISDFYKKFR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRI-QPFETLQTLLERNDFNPKRIRV 185 (706)
T ss_dssp CHHHHHHHHHHHHHH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEE-EESSCHHHHHHHCCCCCTTCEE
T ss_pred CChHhhhCccccCcc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeee-cccchHHHHHHHhhhcchhHHh
Confidence 445668999999987 56677 468999999999999999 9999999999995 47899999997531
Q ss_pred ------cc-ccCC-------------------------------------------------------------CCCCCC
Q 035695 241 ------FF-FFSD-------------------------------------------------------------LSRPLS 252 (548)
Q Consensus 241 ------~l-~~rd-------------------------------------------------------------~~~~Ls 252 (548)
++ +.+| .+++|+
T Consensus 186 ~y~n~ty~~riddi~~~~~~P~~~f~~g~~iSYyk~~~~~~q~ll~~r~~~~~~~~~~v~~~~~~p~~lL~plc~~t~Lt 265 (706)
T 1yvu_A 186 KPIGIDFVGRVQDVFKAKEKGEEFFRLCMERSTHKSSKKAWEELLKNRELREKAFLVVLEKGYTYPATILKPVLTYENLE 265 (706)
T ss_dssp EETTCCCCEEEEEEEESTTSCHHHHHHHHHTCSSHHHHHHHHHHHHCHHHHHHCEEEEETTSCEEEGGGEEECCCCC---
T ss_pred hcccceeccccCcccccCCCcceEecCCCCcceEecccCcchhhhhccccccCCceEEeccCCCCCceeeccccccCCCC
Confidence 10 0000 025666
Q ss_pred hHHH-----------------------------hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccccccc
Q 035695 253 DQVR-----------------------------LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINK 303 (548)
Q Consensus 253 ~~~r-----------------------------~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~ 303 (548)
|+++ +.|||+|+++|+.|+||+||+|+|.++.+.......+..|.|+++ .
T Consensus 266 d~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~-~ 344 (706)
T 1yvu_A 266 DEERNEVADIVRMEPGKRLNLIRYILRRYVKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELC-R 344 (706)
T ss_dssp ---HHHHTSTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHC-C
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCccccccc-C
Confidence 6553 679999999999999999999999865432111222334556655 4
Q ss_pred eeecCcccce---EEEEEeCCCCchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCce
Q 035695 304 KMFNGGRVEV---WTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQ 380 (548)
Q Consensus 304 ~f~~~~~l~~---W~vv~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 380 (548)
+|+.++.++. |.++ +..+. ..++.|++.|.+.|+.+||++..|+...... +.++..++.+.+.+.. ..+++
T Consensus 345 ~~~~~~~l~~~~lW~~i-~~~~~-~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~l~~~~~~-~~~~q 418 (706)
T 1yvu_A 345 PFVKKDVLSVEIISVSV-YKKLE-WRKEEFLKELINFLKNKGIKLKIKGKSLILA---QTREEAKEKLIPVINK-IKDVD 418 (706)
T ss_dssp CCCSCSEEEEEEEEEEC-------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SSTTHHHHHHHHHHTT-TSSCS
T ss_pred ceecccccccceEEEEE-ecchh-HHHHHHHHHHHHHHHHcCceecCCccccccc---hhHHHHHHHHHHHhcc-cCCCc
Confidence 6888888999 8555 34332 2569999999999999999998653332222 3445556655544321 25789
Q ss_pred EEEEEeCCC-------CCc-hhhhhhhcccccceeeeeecccccCCC-cHHHHHHHHHHhhhccCCeeeeeccccccCCC
Q 035695 381 LLIIILPDV-------RGS-YGRIKRVCETELGIVSQCCQPKHASSR-NMQYFENVALKINVKVGGRNTVLDDAVQKRIP 451 (548)
Q Consensus 381 li~vilp~~-------~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~-~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p 451 (548)
++|||+|++ +.+ |+.||++|+ +.||+||||..+++.+. ..+++.||++|||+||||+||.|+. |
T Consensus 419 lvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~ 491 (706)
T 1yvu_A 419 LVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I 491 (706)
T ss_dssp EEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C
T ss_pred EEEEEECCccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeecc------C
Confidence 999999998 677 999999865 89999999999998764 6899999999999999999999984 2
Q ss_pred CcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCc--cccceeeeecccccchhhhccccccCCCCCCcchhhHHHH
Q 035695 452 LVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPE--VTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRE 529 (548)
Q Consensus 452 ~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~--~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~ 529 (548)
...+|||||+||+||+.+. ..||++|+|||+| .+ +.+|.+....|. ++|+++++ +..
T Consensus 492 --~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q~-~~ei~~~l----------------~~~ 550 (706)
T 1yvu_A 492 --EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPAF-GEKLTEKA----------------IGD 550 (706)
T ss_dssp --TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECSC-TTHHHHHH----------------HHH
T ss_pred --CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEecccc-cchHHHHH----------------HHH
Confidence 1268999999999997543 3599999999998 65 578887766554 77876544 455
Q ss_pred HHHHHHHHcCCCCCceEeC
Q 035695 530 LLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 530 ~L~~y~~~ng~lP~~IIiY 548 (548)
+|+.|++.+|.+|+|||||
T Consensus 551 ~l~~~~~~~~~~P~rIIiy 569 (706)
T 1yvu_A 551 VFSLLEKLGFKKGSKIVVH 569 (706)
T ss_dssp HHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHhcCCCCcEEEEE
Confidence 6777888888999999998
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2e-46 Score=413.45 Aligned_cols=421 Identities=16% Similarity=0.119 Sum_probs=284.5
Q ss_pred eEEEEeeEEEEEc---CCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhccCCCCceeeeCCCc--EEecCCCCCCCc
Q 035695 43 KCVVRANHFMVQL---AKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKS--IYTAGPLPFESK 117 (548)
Q Consensus 43 ~i~l~tN~f~l~~---~~~~iy~Y~V~i~p~~~~r~~~r~ii~~l~~~~~~~~~~~~~~~yDG~~~--lys~~~L~~~~~ 117 (548)
++.|.+|||++.. |+ .+|||+|+|+|+++.+ ++. .++..++. .+| .++|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~----~~~~~~~~-~~g--~~~fdg~-~~~l~~~~~l~~--- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEG----YSIYRLAY-ENV--GIVIDPE-NLIIATTKELEY--- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHH-HTT--EEEEETT-TTEEEESSCCCC---
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHH----HHHHHHHh-hcC--cEEecCc-ceeeeccceecc---
Confidence 5789999999987 45 9999999999998877 444 34444543 466 5799997 6 999998861
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHHHHHHHHHHhcCCC-CC-----ccccccccccCCCCCC
Q 035695 118 EFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPS-EK-----HTVVGRSFFSTDLGPM 191 (548)
Q Consensus 118 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~iq~lniilr~~~~-~~-----~~~vGr~ff~~~~~~~ 191 (548)
.+..+.|+++.+++++ +|++|+++|+.+. .+ +..+||+||++.
T Consensus 70 --------------------~~~~~~~~~~~~~~~~-------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~~~---- 118 (771)
T 1u04_A 70 --------------------EGEFIPEGEISFSELR-------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKPK---- 118 (771)
T ss_dssp --------------------SSCCEEEEEECGGGSC-------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCCE----
T ss_pred --------------------CCCeEEEEEEEcceec-------HHHHHHHHHHHHHHcccchHHHHHHhhhcCCCc----
Confidence 1345889999999887 7899999999885 45 789999999762
Q ss_pred ccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccHHHHHhhcc-------------c------------c--cc
Q 035695 192 GQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLD-------------F------------F--FF 244 (548)
Q Consensus 192 ~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~l~~~~-------------~------------l--~~ 244 (548)
--+.+++|+||.+||+..+++++||+|++|+++ +.+||+|+|.+.. + . +.
T Consensus 119 --~~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~-r~~t~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~ 195 (771)
T 1u04_A 119 --TFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQ-SMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVYKPCF 195 (771)
T ss_dssp --EETTEEEEEEEEEEEEECSSCEEEEEEEEEEEE-ESSCHHHHTTTCHHHHHHHHHHSTTTCEEEETTSTTCCEEEECB
T ss_pred --cccccEEEECceeeEEecCCceEEEEEeeeeEe-ehhHHHHHHHHHHHHHHHHHHhccCcEEeeeccccceeEeeccc
Confidence 124688999999999999999999999999998 6799999987420 0 0 00
Q ss_pred -------------------------------------------CCCC-----------------------------CC--
Q 035695 245 -------------------------------------------SDLS-----------------------------RP-- 250 (548)
Q Consensus 245 -------------------------------------------rd~~-----------------------------~~-- 250 (548)
+|.. ||
T Consensus 196 ~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i~d~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~~ 275 (771)
T 1u04_A 196 EEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVDLKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYNA 275 (771)
T ss_dssp CTTSSCBCEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCSCCTTSCEEEEEESCC-----CCCEEECTTTEEEEEEG
T ss_pred ceeecCCccccCCCChhheeceeecCCCCCcchhHHHHHhcCcCcCCCCeEEecchhhccCCCCceeeechHhhhhcCch
Confidence 0100 11
Q ss_pred ----------------CChHHH--------------------------hhccccccCCceEeceEecCCCeEeeccCCcc
Q 035695 251 ----------------LSDQVR--------------------------LKFGIQVADGLTSVDARILPAPMLKYHKSGRE 288 (548)
Q Consensus 251 ----------------Ls~~~r--------------------------~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~ 288 (548)
|++++| +.|| .++.. +.|.+++.++-.+.+++-
T Consensus 276 ~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~~--- 350 (771)
T 1u04_A 276 EQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLNV--- 350 (771)
T ss_dssp GGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC-----
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecCc---
Confidence 222222 2344 56655 776666665544444330
Q ss_pred eeecCCCCccc--cccceeecCcc----cce------EEEEEeCCCCchhHHHHH---------HHHHHHHHhc------
Q 035695 289 ASVNPDFGQWN--MINKKMFNGGR----VEV------WTCMNFSTCLNQDVIGFC---------QRLVDMCNRK------ 341 (548)
Q Consensus 289 ~~~~~~~g~W~--~~~~~f~~~~~----l~~------W~vv~~~~~~~~~~~~f~---------~~l~~~~~~~------ 341 (548)
..+..++|. +++.+++.+.. +++ |++++ ++ ..+.+++|+ +.|.++++.+
T Consensus 351 --~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~-~~-~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~ 426 (771)
T 1u04_A 351 --QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILD-SG-LLADIQNFATNEFRELVKSMYYSLAKKYNSLAKK 426 (771)
T ss_dssp --------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEE-TT-SCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred --CCCccCCcchhhCCCcceecccchhhhhcccccceEEEEe-CC-chHHHHHHHHHHhhhHHHHHHHHHhhcccchhhc
Confidence 124579995 56777765542 444 66664 43 345557887 5555555333
Q ss_pred -----CCcccCCC------ccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeC-CCCCc-hhhhhhhcccccceee
Q 035695 342 -----GMVFNRRP------VIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILP-DVRGS-YGRIKRVCETELGIVS 408 (548)
Q Consensus 342 -----G~~i~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp-~~~~~-Y~~iK~~~d~~~gI~T 408 (548)
||.++.+. .+.....+.+.++++++.+.+++. +..++|++|+++ .++.+ |+.||+.| .+.||+|
T Consensus 427 ~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~--~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpT 503 (771)
T 1u04_A 427 ARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK--GKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVIS 503 (771)
T ss_dssp -----------------CEEEEECTTSHHHHHHHHHHHHHHHT--TCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEE
T ss_pred ccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhcc--CCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCccc
Confidence 34443311 111111123467788888877653 246799877775 44556 99999987 6899999
Q ss_pred eeecccccCCC----c-----HHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEE
Q 035695 409 QCCQPKHASSR----N-----MQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIV 479 (548)
Q Consensus 409 Qcv~~~~~~k~----~-----~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSia 479 (548)
|||..+|+.+. + .+++.||++|||+||||+||.|+. |. .++||||+||+|+++++ ..++++
T Consensus 504 QcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~ 573 (771)
T 1u04_A 504 QVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGS 573 (771)
T ss_dssp EEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEE
T ss_pred EEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCCC-CceEEE
Confidence 99999998643 2 789999999999999999999973 33 68999999999996553 468889
Q ss_pred EEEEecCCCccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHH-cCCCCCceEeC
Q 035695 480 AVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIS-TNRKPESIIFY 548 (548)
Q Consensus 480 a~VaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~-ng~lP~~IIiY 548 (548)
|+|+|.| ....+|.+....|.++ |.++ + +.|+.++|.+|++. +|.+|+|||||
T Consensus 574 A~V~s~d-g~~~~~~s~~~~~~~~-E~i~-l-------------~~~l~~~L~~y~~~n~~~lP~RIIiy 627 (771)
T 1u04_A 574 AVMFDSQ-GYIRKIVPIKIGEQRG-ESVD-M-------------NEFFKEMVDKFKEFNIKLDNKKILLL 627 (771)
T ss_dssp EEEEETT-SCEEEEEEEECCCCSS-SSCC-H-------------HHHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred EEEECCC-CCEEEEEEEEeecCCc-cEEc-H-------------HHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 9999999 7888888766555554 4444 6 88999999999999 48899999998
No 5
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.5e-45 Score=380.09 Aligned_cols=224 Identities=25% Similarity=0.453 Sum_probs=188.3
Q ss_pred cccceeec-CcccceEEEEEeCCC-CchhHHHHHHHHHHHHHhcCCcccCCCcc---ccccCChhhHHHHHHHHHHhccC
Q 035695 300 MINKKMFN-GGRVEVWTCMNFSTC-LNQDVIGFCQRLVDMCNRKGMVFNRRPVI---PISSYNPYQIEKALVDVHNKTTQ 374 (548)
Q Consensus 300 ~~~~~f~~-~~~l~~W~vv~~~~~-~~~~~~~f~~~l~~~~~~~G~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~ 374 (548)
+++++|++ ++++++|++++++.+ ..+.+++|++.|.+.|+.+||.+..|... ...+.....+ .++...+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc---
Confidence 56788999 689999999998543 34456999999999999999999875321 1111122222 23443321
Q ss_pred CCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHH--HHHHHHHHhhhccCCeeeeeccccccCCC
Q 035695 375 PGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQ--YFENVALKINVKVGGRNTVLDDAVQKRIP 451 (548)
Q Consensus 375 ~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~--~~~ni~lKiN~KLGG~n~~l~~~~~~~~p 451 (548)
.+++|+|||+|+++.+ |+.||++||++.||+||||..+++.|.++| |++||+||||+||||+||.|+.. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~ 150 (388)
T 2yha_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (388)
T ss_dssp --HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CH
T ss_pred --CCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3789999999998888 999999999999999999999999888888 99999999999999999999863 56
Q ss_pred CcCCCCeEEEeeeccCCC---CC--CCCCCeEEEEEEecCCCccccceeeeeccc-ccchhhhccccccCCCCCCcchhh
Q 035695 452 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIVAVVASMDWPEVTKYRGLVSAQA-HNEEIIQDLYKSIQDPQRGLVHGG 525 (548)
Q Consensus 452 ~l~~~~tMiiG~DV~H~~---~~--~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~~ 525 (548)
++.+.+|||||+||+||+ || ....|||||||||+| .++++|.+.+++|. +++|++++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (388)
T 2yha_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (388)
T ss_dssp HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HH
Confidence 666689999999999998 77 345799999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---HcCCCCCceEeC
Q 035695 526 MIRELLIAFKI---STNRKPESIIFY 548 (548)
Q Consensus 526 ~~~~~L~~y~~---~ng~lP~~IIiY 548 (548)
|+.++|+.|++ +||.+|+|||||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiy 242 (388)
T 2yha_A 217 KFKTRLELWRSNPANNRSLPENILIF 242 (388)
T ss_dssp HHHHHHHHHHHSGGGTTCCCSEEEEE
T ss_pred HHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 99999999999 789999999998
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=9.2e-42 Score=370.21 Aligned_cols=432 Identities=16% Similarity=0.163 Sum_probs=303.3
Q ss_pred eEEEEeeEEEEE-cC--CcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhccCCCCceeeeCCCcEEecCCCCCCCceE
Q 035695 43 KCVVRANHFMVQ-LA--KRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEF 119 (548)
Q Consensus 43 ~i~l~tN~f~l~-~~--~~~iy~Y~V~i~p~~~~r~~~r~ii~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~ 119 (548)
.+.|.-|-|.++ +. +...|.|++.++|.+...+..+ ++..+..+ .|. ..+==|. .|.|..+ |.. .-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~~-~~~~~~~-~~~-~~~ 75 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG-VTVRMGD-GLASWSP-PEV-LVL 75 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS-SEEEETT-EEEESSC-TTT-SCC
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHH-HHHHHHHH-----hCC-eEEeecC-ceecccC-chh-hhc
Confidence 578999999998 43 7899999999998765544433 34444443 343 2233343 7887766 431 111
Q ss_pred EEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHHHHHHHHHHhcCCC------CCccccccccccCCCCCCcc
Q 035695 120 IITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPS------EKHTVVGRSFFSTDLGPMGQ 193 (548)
Q Consensus 120 ~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~iq~lniilr~~~~------~~~~~vGr~ff~~~~~~~~~ 193 (548)
+-++.. ..+...|...-.=...+|..+..+ -++|+.+-|.... .+...-|.-.+... . .
T Consensus 76 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 140 (685)
T 3ho1_A 76 EGTLAR----------MGQTYAYRLYPKGRRPLDPKDPGE-RSVLSALARRLLQERLRRLEGVWVEGLAVYRRE---H-A 140 (685)
T ss_dssp EEEEEC----------SSCEEEEEEEEEEECCCCTTSHHH-HHHHHHHHHHHHHHHHHTCSSSEEETTEEEEEE---E-E
T ss_pred cchhcc----------ccCCcceeeeecccccCCCCChHH-HHHHHHHHHHHHHHHHHhhhceEEccEEEEeec---C-C
Confidence 222221 123445666666667788877766 6666666555332 22222233334322 1 1
Q ss_pred CCCcEEEEEeeeeeeeccc-ceeEEEeecceeeeeccccHHHHHhh-cc---------------cccc------------
Q 035695 194 LGDGIEYWRGYFQSLRPTQ-FGLSLNIGFSHYILYNLMLLIFILSK-LD---------------FFFF------------ 244 (548)
Q Consensus 194 l~~gle~~~G~~~Svr~~~-~~l~LniD~s~~~f~~~~~l~d~l~~-~~---------------~l~~------------ 244 (548)
-+.|.|+.+|+...|.+.. ++++|.+|..|.. ++..++.+++.+ +. +.++
T Consensus 141 ~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~~~~~~~~~v~~~y~~~~~~~~~~~~~~p~~~~l~~ 219 (685)
T 3ho1_A 141 RGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPG 219 (685)
T ss_dssp EETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHHHSCCCCSEEEESSSCCEECCCEEECCCTTCC----
T ss_pred CCCceEEecceEEEEEECCCCcEEEEEeeheee-cChhhHHHHHHhCCCccHHHhhhcccceEEEeecccCCchheecCC
Confidence 2789999999999999997 8999999999995 578999999997 21 0000
Q ss_pred --------------C-----------C---C----------------CCC-----------CChHHH------------h
Q 035695 245 --------------S-----------D---L----------------SRP-----------LSDQVR------------L 257 (548)
Q Consensus 245 --------------r-----------d---~----------------~~~-----------Ls~~~r------------~ 257 (548)
+ + . +.+ ||.++| +
T Consensus 220 ~~s~~~y~~~k~~~~~~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~m~~l~~~~~~~~trlsP~~R~~~l~~~~~~i~~ 299 (685)
T 3ho1_A 220 GLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGR 299 (685)
T ss_dssp --CSTTTTTTTSTTTTSCCCSEEEECSCC---CCEEEETTSEEEECCTTTTSSCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcccccccCCceEEEEeccccCCCcceeeeeeechHhHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 0 0 0 122 344454 8
Q ss_pred hccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCCCchhHHHHHHHHHHH
Q 035695 258 KFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDM 337 (548)
Q Consensus 258 ~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l~~~ 337 (548)
.|||+ +++|++|+||+||||+| +++. .+ .+.|.+.+.+|+.++.. .|+++++.+. +...++|+++|.+.
T Consensus 300 ~~Gl~-~~~~i~v~gRvLppp~I-~g~~----~~---~~~~d~~~~~~~~~~~~-~~ail~l~~~-~~~~~~f~~~L~~v 368 (685)
T 3ho1_A 300 RLGLG-TPEAVRAQAYRLSIPKL-MGRR----AV---SKPADALRVGFYRAQET-ALALLRLDGA-QGWPEFLRRALLRA 368 (685)
T ss_dssp TTCSC-CCEEEEEEEEECCCCCE-ESSS----BC---SSGGGHHHHCCSSCCCE-EEEEEECSSC-CSCCHHHHHHHHHH
T ss_pred hcCCC-CCCcceEEEEEcCHHHh-cCCC----Cc---CCchhhccCcceeccCc-eEEEEeccCc-hHHHHHHHHHHHHH
Confidence 89999 99999999999999999 7642 11 34566667778887765 7999988642 23448999999999
Q ss_pred HHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeeccccc
Q 035695 338 CNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHA 416 (548)
Q Consensus 338 ~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~ 416 (548)
|+.+||+|..+....... +...+...+++..+ .++|+||||+|++..+ |+.||+.| .+.||+||||. +++
T Consensus 369 a~~~G~~i~~~~~~~~~~-d~~~~~~~l~~~~~------~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl 439 (685)
T 3ho1_A 369 FGASGASLRLHTLHAHPS-QGLAFREALRKAKE------EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPL 439 (685)
T ss_dssp HHSSSSCEEEEECCCCGG-GTHHHHHHHHHHHH------TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSC
T ss_pred HHhCCcEeccceeecCCC-chHHHHHHHHHhhh------cCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-ccc
Confidence 999999998521111111 11244555665554 5799999999999888 99999875 79999999999 888
Q ss_pred CCCcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCC-Ccccccee
Q 035695 417 SSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDW-PEVTKYRG 495 (548)
Q Consensus 417 ~k~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~-~~~~~y~~ 495 (548)
.+...++++||++|||+||||+||.|+. |. .++||||+||+|++. .+++|++++++- ....+| +
T Consensus 440 ~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~ 504 (685)
T 3ho1_A 440 REEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-T 504 (685)
T ss_dssp CTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-E
T ss_pred ccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEECCCCEEEe-E
Confidence 7888999999999999999999999984 43 689999999999862 355555555440 344443 3
Q ss_pred eeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695 496 LVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548 (548)
Q Consensus 496 ~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY 548 (548)
..+.|.+.++.++++ .+|+.++|..|++.||.+|+|||||
T Consensus 505 ~~~~Q~~e~l~~~~L-------------~~~l~eaL~~Y~k~ng~lP~RIIIy 544 (685)
T 3ho1_A 505 LPEAQAGERIPQEVV-------------WDLLEETLWAFRRKAGRLPSRVLLL 544 (685)
T ss_dssp CCCCCCSCCCHHHHH-------------HHHHHHHHHHHHHHHSSCCSEEEEE
T ss_pred EEEccCCcEecHHHH-------------HHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 345665544455678 9999999999999999999999998
No 7
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=5.5e-44 Score=375.86 Aligned_cols=224 Identities=25% Similarity=0.453 Sum_probs=188.1
Q ss_pred cccceeec-CcccceEEEEEeCCC-CchhHHHHHHHHHHHHHhcCCcccCCCcc---ccccCChhhHHHHHHHHHHhccC
Q 035695 300 MINKKMFN-GGRVEVWTCMNFSTC-LNQDVIGFCQRLVDMCNRKGMVFNRRPVI---PISSYNPYQIEKALVDVHNKTTQ 374 (548)
Q Consensus 300 ~~~~~f~~-~~~l~~W~vv~~~~~-~~~~~~~f~~~l~~~~~~~G~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~ 374 (548)
+++++|++ ++++++|++++++.+ ..+.++.|++.|.+.|+.+||.+..|... .........+ .++.+.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence 46788999 688999999998533 34456999999999999999999875321 1211122222 23444321
Q ss_pred CCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHH--HHHHHHHHhhhccCCeeeeeccccccCCC
Q 035695 375 PGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQ--YFENVALKINVKVGGRNTVLDDAVQKRIP 451 (548)
Q Consensus 375 ~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~--~~~ni~lKiN~KLGG~n~~l~~~~~~~~p 451 (548)
.+++|+|||+|+++.+ |+.||++||++.||+||||..+++.|.++| |++||+||||+||||+||.|+.. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~ 150 (437)
T 2yhb_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (437)
T ss_dssp --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred --CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 4789999999998888 999999999999999999999999888888 99999999999999999999863 56
Q ss_pred CcCCCCeEEEeeeccCCC---CC--CCCCCeEEEEEEecCCCccccceeeeeccc-ccchhhhccccccCCCCCCcchhh
Q 035695 452 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIVAVVASMDWPEVTKYRGLVSAQA-HNEEIIQDLYKSIQDPQRGLVHGG 525 (548)
Q Consensus 452 ~l~~~~tMiiG~DV~H~~---~~--~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~~ 525 (548)
++.+.+|||||+||+||+ || ....|||||||||+| .++++|.+.+++|. +++|++++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (437)
T 2yhb_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (437)
T ss_dssp HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HH
Confidence 666689999999999998 76 335799999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---HcCCCCCceEeC
Q 035695 526 MIRELLIAFKI---STNRKPESIIFY 548 (548)
Q Consensus 526 ~~~~~L~~y~~---~ng~lP~~IIiY 548 (548)
|+.++|+.|++ +||.+|+|||||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiy 242 (437)
T 2yhb_A 217 KFKTRLELWRSNPANNRSLPENILIF 242 (437)
T ss_dssp HHHHHHHHHHTCGGGTTCCCSEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCceEEEE
Confidence 99999999999 789999999998
No 8
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.96 E-value=7.4e-30 Score=227.61 Aligned_cols=137 Identities=61% Similarity=1.032 Sum_probs=121.1
Q ss_pred cceeecCcccceEEEEEeCCC-CchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCce
Q 035695 302 NKKMFNGGRVEVWTCMNFSTC-LNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQ 380 (548)
Q Consensus 302 ~~~f~~~~~l~~W~vv~~~~~-~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 380 (548)
+++|++|+++++|++++++++ ..+.+++|++.|.+.|+.+||.++.||.+.....+++++++.|+++++.+ .+++
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~----~~~q 77 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA----PGLQ 77 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC----TTCS
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc----CCCc
Confidence 578999999999999998643 34456999999999999999999987765544455788999999998876 5799
Q ss_pred EEEEEeCCCCCchhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhccCCeeeee
Q 035695 381 LLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVL 442 (548)
Q Consensus 381 li~vilp~~~~~Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n~~l 442 (548)
|+|||+|+++.+|+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 78 lv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 78 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 99999999865699999999999999999999999999999999999999999999999975
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.96 E-value=7e-30 Score=230.12 Aligned_cols=141 Identities=57% Similarity=0.948 Sum_probs=123.4
Q ss_pred cceeecCcccceEEEEEeCCCCch-hHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccC---CCC
Q 035695 302 NKKMFNGGRVEVWTCMNFSTCLNQ-DVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQ---PGK 377 (548)
Q Consensus 302 ~~~f~~~~~l~~W~vv~~~~~~~~-~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 377 (548)
+++|++|+++++|+++++++..++ .+++|++.|.+.|+.+||.++.||.+.....+++++++.|+++++++.. ++.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 468999999999999998765443 3488999999999999999998887666556678899999988876531 125
Q ss_pred CceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhccCCeeeee
Q 035695 378 QLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVL 442 (548)
Q Consensus 378 ~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n~~l 442 (548)
+++|++||+|+++.+ |+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 799999999999888 99999999999999999999999998899999999999999999999975
No 10
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.95 E-value=1.9e-28 Score=218.31 Aligned_cols=134 Identities=31% Similarity=0.518 Sum_probs=114.1
Q ss_pred ccceeecCcccceEEEEEeCCC---CchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCC
Q 035695 301 INKKMFNGGRVEVWTCMNFSTC---LNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGK 377 (548)
Q Consensus 301 ~~~~f~~~~~l~~W~vv~~~~~---~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 377 (548)
++++|++|+++++|++++++++ ..+.+++|++.|.+.|+.+||.++.+|.+.....++++++..++++.+.. .
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~----~ 76 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY----A 76 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC----T
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC----C
Confidence 3578999999999999998632 34455999999999999999999877765444344678899999887753 4
Q ss_pred CceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhccCCee
Q 035695 378 QLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRN 439 (548)
Q Consensus 378 ~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n 439 (548)
+++|+|||+|+ +.+ |+.||++||+++||+||||..+++.|.++||++||+||||+||||+|
T Consensus 77 ~~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 77 GLQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp TCCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 78999999996 566 99999999999999999999999999999999999999999999997
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.95 E-value=3.1e-28 Score=220.11 Aligned_cols=141 Identities=32% Similarity=0.489 Sum_probs=104.5
Q ss_pred cceeecCcccceEEEEEeCCCC--chhHHHHHHHHHHHHHhcCCcccCCCccccc----cCChhhHHHHHHHHHHhccCC
Q 035695 302 NKKMFNGGRVEVWTCMNFSTCL--NQDVIGFCQRLVDMCNRKGMVFNRRPVIPIS----SYNPYQIEKALVDVHNKTTQP 375 (548)
Q Consensus 302 ~~~f~~~~~l~~W~vv~~~~~~--~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 375 (548)
+++|++|+++++|+++++++.. ++.+++|++.|.+.|+.+||.+++|...... ..+++++++.|+++++++..+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 4689999999999999987542 2345899999999999999999865433211 235677888888887655421
Q ss_pred --CCCceEEEEEeCCCCCchhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhhccCCeeeee
Q 035695 376 --GKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVL 442 (548)
Q Consensus 376 --~~~~~li~vilp~~~~~Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n~~l 442 (548)
+..++|++||+|+++..|+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 1367999999999873399999999999999999999999999999999999999999999999975
No 12
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.92 E-value=1.1e-26 Score=244.23 Aligned_cols=228 Identities=15% Similarity=0.139 Sum_probs=145.8
Q ss_pred ecCCCeEeeccCCcce-----eecCCCCccccccceeecCccc--ceEEEEEeCCCCchhHHHHHHHHHHHHH---hcCC
Q 035695 274 ILPAPMLKYHKSGREA-----SVNPDFGQWNMINKKMFNGGRV--EVWTCMNFSTCLNQDVIGFCQRLVDMCN---RKGM 343 (548)
Q Consensus 274 vL~~P~i~~~~~~~~~-----~~~~~~g~W~~~~~~f~~~~~l--~~W~vv~~~~~~~~~~~~f~~~l~~~~~---~~G~ 343 (548)
.|..|.+.|+.++.+. +.+|..| ++....+..... .+|++|+-. +..+ |++.|.+... ..++
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~-~~~~----~l~~l~~~~~~~~g~~f 76 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNN-QFSS----LINQLKSQISSKIDEVW 76 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESC-TTCH----HHHHHHHHHHHHHHHTT
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECc-ccHH----HHHHHHHhhhhcCCCce
Confidence 4677889988322111 1122222 333344443333 799999743 3332 5555554432 2455
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEe--------CCCCCchhhhhhhcccccceeeeeecccc
Q 035695 344 VFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIIL--------PDVRGSYGRIKRVCETELGIVSQCCQPKH 415 (548)
Q Consensus 344 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vil--------p~~~~~Y~~iK~~~d~~~gI~TQcv~~~~ 415 (548)
.+..+. . +.+.+.+.+.+..+ .+++++|||+ |++..+|..+|+ ++++.||+||||..+|
T Consensus 77 ~~~~~~-~-----~~~~y~~~i~~~l~------~~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~t 143 (427)
T 2w42_A 77 HIHNIN-I-----SEFIYDSPHFDSIK------SQVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYDI 143 (427)
T ss_dssp CCCSCE-E-----EEEECSSSSHHHHH------HHHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGGG
T ss_pred eecCCc-C-----ChHHHHHHHHHHhc------CCCCEEEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhhh
Confidence 553321 1 11122222222222 2578999999 655555445786 6679999999999999
Q ss_pred cCCCcH-HHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccce
Q 035695 416 ASSRNM-QYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYR 494 (548)
Q Consensus 416 ~~k~~~-~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~ 494 (548)
+.+.+. .++.||++|||+||||+||.|+.. .|. .++||||+||+|++++ +++|++.+.| .+..-+.
T Consensus 144 l~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~ 210 (427)
T 2w42_A 144 LSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLW 210 (427)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEE
T ss_pred cccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEE
Confidence 987664 458899999999999999999852 122 5799999999999753 6777654444 4443344
Q ss_pred eeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHH-HcCCCCC--ceEeC
Q 035695 495 GLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKI-STNRKPE--SIIFY 548 (548)
Q Consensus 495 ~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~-~ng~lP~--~IIiY 548 (548)
+.+..|.+++|++++| ++++.++|+.|++ .|+.+|+ |||||
T Consensus 211 ~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~ 254 (427)
T 2w42_A 211 NEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS 254 (427)
T ss_dssp EEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE
T ss_pred EEEEecCChhHHHHHH-------------HHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 4556666789999999 9999999999999 8999998 66885
No 13
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=33.43 E-value=83 Score=30.31 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh--ccCCeeeeec
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV--KVGGRNTVLD 443 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~--KLGG~n~~l~ 443 (548)
..|.|.+++.-++..+ |-..|...+.+.||.+..+.... .....-+.+.+.++|. +.-|++..+.
T Consensus 32 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v~GIlvqlP 100 (285)
T 3p2o_A 32 IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NITQNELLALINTLNHDDSVHGILVQLP 100 (285)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 4688888887776554 99888888888999888776642 1233455667778886 5667776544
No 14
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=27.90 E-value=26 Score=19.14 Aligned_cols=9 Identities=56% Similarity=1.054 Sum_probs=7.4
Q ss_pred ccCCCCCCC
Q 035695 29 VRLPVRPGF 37 (548)
Q Consensus 29 ~~~~~RP~~ 37 (548)
.+||.||+-
T Consensus 3 wrfparpg~ 11 (21)
T 3u85_B 3 WRFPARPGT 11 (26)
T ss_pred cccccCCCc
Confidence 579999984
No 15
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=24.95 E-value=1.2e+02 Score=29.37 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=19.0
Q ss_pred CCceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecc
Q 035695 377 KQLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQP 413 (548)
Q Consensus 377 ~~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~ 413 (548)
..|.|.+++.-++... |-..|...+.+.||.+..+..
T Consensus 52 ~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~l 90 (303)
T 4b4u_A 52 RTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIEL 90 (303)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455555555444333 555555555555555555544
No 16
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=23.97 E-value=2.7e+02 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.1
Q ss_pred CeEEEeeeccCCCCCCCCCCeEEEEEEecCCCcc
Q 035695 457 PTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEV 490 (548)
Q Consensus 457 ~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~ 490 (548)
|.-|=++|+||-. +.-.|+++|.=.| ..+
T Consensus 14 p~rIE~fDiSh~~----G~~~V~smVvf~~-g~p 42 (226)
T 3c65_A 14 PRRIEAFDNSNIY----GADPVSALVVFLD-GKP 42 (226)
T ss_dssp CSEEEEEEEEESS----SSSCEEEEEEEET-TEE
T ss_pred CCEEEEEECCccC----CcCceEEEEEEeC-Ccc
Confidence 6688999999975 2568888888666 544
No 17
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=23.40 E-value=1e+02 Score=29.58 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=30.7
Q ss_pred CceEEEEEeCCCCCc--hhhhhhhcccccceeeeeecccccCCCcHHHHHHHHHHhhh
Q 035695 378 QLQLLIIILPDVRGS--YGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINV 433 (548)
Q Consensus 378 ~~~li~vilp~~~~~--Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~~~~ni~lKiN~ 433 (548)
.|.|.++..-++..+ |-.-|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 32 ~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~i~~lN~ 87 (281)
T 2c2x_A 32 TPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPA--DISTATLNETIDELNA 87 (281)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcC
Confidence 466666666655443 77777666667777776665532 1122334445556654
No 18
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.30 E-value=2.1e+02 Score=22.32 Aligned_cols=58 Identities=14% Similarity=0.338 Sum_probs=35.8
Q ss_pred EEEEeCCCCchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCC
Q 035695 315 TCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDV 389 (548)
Q Consensus 315 ~vv~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~ 389 (548)
.+++|+. + ++-+..+.+..++.|+.+.. + .+|..+.+.+.++.++ .+..++++++.++
T Consensus 4 vivvfst-d----eetlrkfkdiikkngfkvrt-----v--rspqelkdsieelvkk-----ynativvvvvddk 61 (134)
T 2l69_A 4 VIVVFST-D----EETLRKFKDIIKKNGFKVRT-----V--RSPQELKDSIEELVKK-----YNATIVVVVVDDK 61 (134)
T ss_dssp EEEECCC-C----HHHHHHHHHHHHHTTCEEEE-----E--CSHHHHHHHHHHHTTC-----CCCEEEEEECSSH
T ss_pred EEEEEeC-C----HHHHHHHHHHHHhcCceEEE-----e--cCHHHHHHHHHHHHHH-----hCCeEEEEEEccH
Confidence 4555653 2 33455566667778887642 1 2366777777777764 4567777777765
No 19
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=21.41 E-value=42 Score=31.43 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCC-CCCceEe
Q 035695 528 RELLIAFKISTNR-KPESIIF 547 (548)
Q Consensus 528 ~~~L~~y~~~ng~-lP~~IIi 547 (548)
..+|.+|...+|. +|.+|+|
T Consensus 197 s~~l~aFk~k~G~~~PtkI~V 217 (246)
T 3nqi_A 197 SQILREYTLKSGQTKPAKITI 217 (246)
T ss_dssp HHHHHHHHHHHCCSSCSEEEE
T ss_pred HHHHHHHHHhcCCcCCcEEEE
Confidence 5789999999986 8999997
Done!