BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035696
         (405 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99027|COMP_BACSU Sensor histidine kinase ComP OS=Bacillus subtilis (strain 168)
           GN=comP PE=2 SV=3
          Length = 769

 Score = 35.8 bits (81), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLK 167
           HIE L + LKDL  +G N   L KL+   E++   G +R+L D VL+
Sbjct: 535 HIEELMEHLKDLKQEGTNPIWLKKLMFAIEEKQRSGLARDLHDSVLQ 581


>sp|A5DLL7|RIX1_PICGU Pre-rRNA-processing protein RIX1 OS=Meyerozyma guilliermondii
           (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
           10279 / NRRL Y-324) GN=RIX1 PE=3 SV=2
          Length = 712

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 10/184 (5%)

Query: 63  LSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQA--WIDRE 120
           L+ +   L + KT+V  L   R  + + S ++     H +SR      + IQ   W    
Sbjct: 4   LAVILSELQEPKTIVPVLSSLRSGSPVWSNISGPDQKHLVSRTLNLTRSSIQFRRWFGIN 63

Query: 121 HIERLTKALKDLDGDGGN-VDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC 179
            I  L    K + GDG   + +L+KLL Q     S  + + L + +       + ++I  
Sbjct: 64  VIRVLADNYKIMAGDGSQIIGQLLKLLEQCNQFTSAVYFKSLVECIDH-----VCDSIRG 118

Query: 180 NPSCSKSLREQSAYSIASLI--RFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKS 237
            P+ ++ L   +  +I  L   +F+ D       + P ++A  T      +K+  +++++
Sbjct: 119 KPTMTRELLTPNLPAIIGLYLEKFSHDPAYLVSRLAPYIRAHPTTFRPFGNKLRSKIMET 178

Query: 238 IKSP 241
           I SP
Sbjct: 179 ILSP 182


>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
           PE=2 SV=1
          Length = 782

 Score = 32.3 bits (72), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 246 IESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVEL 301
           + S G I  + ++LDM D   +  A+ C+L I   GR+  I  +L++G++  LV +
Sbjct: 632 VSSQGMISSLATVLDMGDTTEQEQAVSCLL-ILCNGRESCIQMVLQEGVIPSLVSI 686


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,958,665
Number of Sequences: 539616
Number of extensions: 5131514
Number of successful extensions: 19083
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 19058
Number of HSP's gapped (non-prelim): 62
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)