Query 035696
Match_columns 405
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 98.1 6.5E-05 1.4E-09 88.5 15.3 196 99-305 425-663 (2102)
2 cd00020 ARM Armadillo/beta-cat 97.8 5.7E-05 1.2E-09 58.3 6.2 111 164-278 2-119 (120)
3 PF10508 Proteasom_PSMB: Prote 97.7 0.002 4.3E-08 66.1 17.9 223 43-302 19-252 (503)
4 PLN03200 cellulose synthase-in 97.1 0.012 2.5E-07 70.4 16.7 136 166-306 606-748 (2102)
5 cd00020 ARM Armadillo/beta-cat 96.4 0.016 3.4E-07 44.8 7.1 87 214-303 7-101 (120)
6 COG5064 SRP1 Karyopherin (impo 96.3 0.0081 1.7E-07 62.1 6.5 198 100-307 265-481 (526)
7 KOG0166 Karyopherin (importin) 96.2 0.14 2.9E-06 54.5 15.1 197 97-303 129-331 (514)
8 KOG0166 Karyopherin (importin) 95.9 0.057 1.2E-06 57.3 10.6 140 158-302 268-416 (514)
9 COG5064 SRP1 Karyopherin (impo 95.6 0.31 6.8E-06 50.9 13.9 177 121-305 72-297 (526)
10 PF04826 Arm_2: Armadillo-like 95.3 0.22 4.7E-06 47.9 11.4 187 115-317 7-201 (254)
11 PF10508 Proteasom_PSMB: Prote 93.4 1.5 3.2E-05 45.5 13.1 163 125-304 43-213 (503)
12 PF05804 KAP: Kinesin-associat 93.0 0.25 5.3E-06 54.2 7.1 91 212-304 288-383 (708)
13 PF05804 KAP: Kinesin-associat 88.8 22 0.00048 39.5 16.9 247 15-280 389-650 (708)
14 PRK09687 putative lyase; Provi 86.5 18 0.00038 35.1 13.0 27 251-277 160-186 (280)
15 PF00514 Arm: Armadillo/beta-c 85.9 1.2 2.6E-05 30.7 3.6 36 243-278 5-40 (41)
16 PF00514 Arm: Armadillo/beta-c 84.0 2.3 4.9E-05 29.4 4.2 41 158-200 1-41 (41)
17 PF03224 V-ATPase_H_N: V-ATPas 83.8 12 0.00027 36.0 10.6 159 140-305 71-251 (312)
18 KOG4224 Armadillo repeat prote 83.0 14 0.00031 39.4 11.2 162 121-302 252-426 (550)
19 PRK13800 putative oxidoreducta 81.8 34 0.00073 38.2 14.2 31 253-286 810-840 (897)
20 PF05004 IFRD: Interferon-rela 81.6 38 0.00082 33.5 13.1 109 169-282 129-260 (309)
21 KOG2160 Armadillo/beta-catenin 81.4 29 0.00064 35.8 12.6 135 136-277 94-238 (342)
22 PF12348 CLASP_N: CLASP N term 81.4 9.7 0.00021 34.1 8.3 131 136-278 18-159 (228)
23 PF02985 HEAT: HEAT repeat; I 76.9 3 6.6E-05 27.7 2.8 28 252-279 2-29 (31)
24 PF03224 V-ATPase_H_N: V-ATPas 72.4 59 0.0013 31.4 11.4 121 187-309 166-299 (312)
25 smart00185 ARM Armadillo/beta- 72.2 6.4 0.00014 25.9 3.5 36 243-278 5-40 (41)
26 PF13646 HEAT_2: HEAT repeats; 71.5 5.9 0.00013 29.9 3.6 39 250-291 31-69 (88)
27 PF13646 HEAT_2: HEAT repeats; 68.7 8.6 0.00019 29.0 4.0 35 252-289 1-36 (88)
28 PRK09687 putative lyase; Provi 67.8 24 0.00052 34.2 7.8 101 171-291 130-230 (280)
29 KOG4224 Armadillo repeat prote 67.2 55 0.0012 35.2 10.6 143 156-303 236-386 (550)
30 PF02985 HEAT: HEAT repeat; I 65.9 8.8 0.00019 25.4 3.1 29 170-200 1-29 (31)
31 PRK13800 putative oxidoreducta 62.8 51 0.0011 36.9 10.0 90 169-277 652-741 (897)
32 KOG2160 Armadillo/beta-catenin 59.4 56 0.0012 33.8 8.8 119 157-278 154-281 (342)
33 PF12348 CLASP_N: CLASP N term 57.2 58 0.0013 29.1 7.7 127 140-280 71-207 (228)
34 PF04499 SAPS: SIT4 phosphatas 57.0 41 0.0009 35.5 7.7 60 243-302 55-127 (475)
35 PF01602 Adaptin_N: Adaptin N 56.9 42 0.00091 33.4 7.4 34 248-281 265-298 (526)
36 TIGR02270 conserved hypothetic 56.0 2.6E+02 0.0056 29.2 15.6 222 58-291 26-276 (410)
37 PF01602 Adaptin_N: Adaptin N 53.7 2.2E+02 0.0048 28.4 11.8 134 121-278 80-220 (526)
38 KOG1467 Translation initiation 53.5 27 0.00059 38.0 5.7 122 10-169 253-380 (556)
39 PF04826 Arm_2: Armadillo-like 52.9 71 0.0015 31.1 8.0 149 194-395 16-171 (254)
40 smart00288 VHS Domain present 51.7 1.2E+02 0.0027 26.3 8.6 81 119-205 36-117 (133)
41 PF13513 HEAT_EZ: HEAT-like re 50.1 13 0.00029 26.6 2.0 40 155-198 16-55 (55)
42 KOG1293 Proteins containing ar 50.0 86 0.0019 35.2 8.9 114 124-281 13-127 (678)
43 KOG0946 ER-Golgi vesicle-tethe 47.9 1.4E+02 0.003 34.7 10.2 184 111-305 107-327 (970)
44 smart00185 ARM Armadillo/beta- 47.7 39 0.00085 22.0 3.9 38 160-199 3-40 (41)
45 PF08542 Rep_fac_C: Replicatio 45.3 30 0.00064 27.1 3.5 42 122-163 41-82 (89)
46 KOG1058 Vesicle coat complex C 43.1 87 0.0019 36.1 7.8 112 167-297 241-364 (948)
47 PRK07764 DNA polymerase III su 42.9 1.5E+02 0.0033 33.7 9.7 43 117-167 246-289 (824)
48 KOG2171 Karyopherin (importin) 42.2 6.7E+02 0.014 30.1 14.6 196 92-302 362-571 (1075)
49 KOG2171 Karyopherin (importin) 42.2 6.8E+02 0.015 30.0 18.5 226 19-280 20-279 (1075)
50 KOG1242 Protein containing ada 40.8 5.6E+02 0.012 28.6 16.4 204 69-290 116-335 (569)
51 PF12460 MMS19_C: RNAPII trans 40.7 1.4E+02 0.0031 30.2 8.3 71 227-301 343-414 (415)
52 PF08429 PLU-1: PLU-1-like pro 39.8 55 0.0012 31.7 5.1 126 37-178 13-141 (335)
53 PF06371 Drf_GBD: Diaphanous G 37.0 41 0.0009 29.1 3.5 79 200-278 93-186 (187)
54 PTZ00046 rifin; Provisional 35.1 45 0.00099 34.7 3.9 43 135-177 50-110 (358)
55 TIGR01477 RIFIN variant surfac 32.9 52 0.0011 34.2 3.9 42 136-177 54-113 (353)
56 PF06163 DUF977: Bacterial pro 30.5 53 0.0011 29.9 3.1 24 362-385 1-24 (127)
57 PF12726 SEN1_N: SEN1 N termin 30.3 1.1E+02 0.0023 33.5 5.9 55 243-297 516-572 (727)
58 KOG1248 Uncharacterized conser 30.0 2.4E+02 0.0052 33.8 8.8 114 166-295 670-795 (1176)
59 PF15005 IZUMO: Izumo sperm-eg 28.8 3E+02 0.0066 25.7 7.8 68 89-166 55-127 (160)
60 PTZ00429 beta-adaptin; Provisi 28.4 2.2E+02 0.0048 32.1 8.0 32 174-207 145-176 (746)
61 PF12755 Vac14_Fab1_bd: Vacuol 28.0 79 0.0017 26.5 3.6 50 251-302 28-77 (97)
62 KOG1048 Neural adherens juncti 27.3 1.2E+02 0.0025 34.4 5.6 69 211-279 230-304 (717)
63 smart00319 TarH Homologues of 27.1 1.9E+02 0.0041 23.3 5.6 84 68-166 42-125 (135)
64 KOG1222 Kinesin associated pro 27.0 1.4E+02 0.0031 33.3 6.0 91 214-306 304-399 (791)
65 smart00342 HTH_ARAC helix_turn 27.0 1.4E+02 0.0031 21.5 4.4 67 214-281 2-69 (84)
66 KOG1932 TATA binding protein a 26.7 1.9E+02 0.004 34.6 7.2 124 125-277 647-774 (1180)
67 PF02944 BESS: BESS motif; In 26.0 73 0.0016 22.4 2.6 24 361-384 13-36 (37)
68 PF07539 DRIM: Down-regulated 25.6 54 0.0012 29.4 2.3 40 254-293 21-63 (141)
69 PF12755 Vac14_Fab1_bd: Vacuol 25.2 4.1E+02 0.0089 22.3 8.5 82 100-194 8-91 (97)
70 PF11829 DUF3349: Protein of u 24.8 1.3E+02 0.0029 26.0 4.4 60 89-151 28-87 (96)
71 PHA02795 ankyrin-like protein; 24.1 1.9E+02 0.0042 30.7 6.3 84 210-294 43-142 (437)
72 COG3311 AlpA Predicted transcr 24.1 42 0.00091 27.6 1.2 18 104-121 48-65 (70)
73 PRK14952 DNA polymerase III su 23.6 5.5E+02 0.012 28.2 9.7 49 96-160 231-279 (584)
74 KOG0567 HEAT repeat-containing 22.7 1.8E+02 0.0039 29.8 5.5 95 97-199 151-248 (289)
75 PF13606 Ank_3: Ankyrin repeat 21.6 63 0.0014 21.5 1.5 16 278-293 10-25 (30)
76 KOG1222 Kinesin associated pro 21.6 3.7E+02 0.0081 30.3 7.9 50 213-264 344-400 (791)
77 PF12169 DNA_pol3_gamma3: DNA 21.4 1.3E+02 0.0029 25.3 3.8 39 114-160 10-48 (143)
78 cd00088 HPT Histidine Phosphot 21.3 2.8E+02 0.0061 21.6 5.3 24 69-92 31-54 (94)
79 PF13251 DUF4042: Domain of un 20.8 49 0.0011 31.0 1.1 126 141-274 8-169 (182)
80 PF06786 UPF0253: Uncharacteri 20.2 1.1E+02 0.0025 25.2 2.9 27 173-199 33-59 (66)
81 cd00176 SPEC Spectrin repeats, 20.1 5.3E+02 0.011 21.6 9.8 89 15-121 37-126 (213)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.06 E-value=6.5e-05 Score=88.49 Aligned_cols=196 Identities=16% Similarity=0.159 Sum_probs=148.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHH
Q 035696 99 THSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETIL 178 (405)
Q Consensus 99 ~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L 178 (405)
...++-++..=..-+|+-+++..|..||..|+. +++..+..++..+-+ ++. .+.+-+..|..++.++.|-.+|
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-----~s~~iQ~~A~~~L~n-La~-~ndenr~aIieaGaIP~LV~LL 497 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGL-----SSEQQQEYAVALLAI-LTD-EVDESKWAITAAGGIPPLVQLL 497 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHH-HHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence 334444554445668999999999999999996 456666666666665 544 5666778899999999999999
Q ss_pred hCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHh--------------
Q 035696 179 CNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKS-------------- 237 (405)
Q Consensus 179 ~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~-------------- 237 (405)
..+ +..+++++|++|..|... .+-+-..|.+..+|+.|+.+... .+..+|++++..
T Consensus 498 ~s~--~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 498 ETG--SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred cCC--CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 644 568999999999999863 22222334477888888888765 567777777531
Q ss_pred -------------hcChh----HHH-----HHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHH
Q 035696 238 -------------IKSPL----VDE-----IESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLV 295 (405)
Q Consensus 238 -------------i~spL----vDe-----i~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glV 295 (405)
++..+ -++ ...+|=||.|+.+|++.+.+++.-|..++..+.- ||++.++++...|.|
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~~d~~~avv~agaI 653 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-SRQDLCESLATDEII 653 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCH
Confidence 11111 011 1247899999999999999999999999999887 999999999999999
Q ss_pred HHHHHHhhhc
Q 035696 296 KKLVELQRSE 305 (405)
Q Consensus 296 eKLv~LqRse 305 (405)
.-||.|=++.
T Consensus 654 pPLV~LLss~ 663 (2102)
T PLN03200 654 NPCIKLLTNN 663 (2102)
T ss_pred HHHHHHHhcC
Confidence 9999998653
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.80 E-value=5.7e-05 Score=58.34 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=90.4
Q ss_pred HHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHH
Q 035696 164 LVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIK 236 (405)
Q Consensus 164 liL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~ 236 (405)
.+.+.++++.|-.+|.+++ ..+|+.+++++..+.. +-+.+...++...+++.|+.+++. .++.+|++|..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSA-GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 3567788888888897764 7899999999999884 445666677777999999998887 58888888876
Q ss_pred hhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 237 SIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 237 ~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
. ..+-.+.+..+|.||.++.+|+..|.+++..+..++-.++
T Consensus 79 ~-~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 G-PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred C-cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 2244778889999999999999999999999988876654
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.74 E-value=0.002 Score=66.09 Aligned_cols=223 Identities=21% Similarity=0.292 Sum_probs=149.7
Q ss_pred HHHHHchhccccccccCCCCchhHHHHHHHHHHHHHHHhhcCCCCc---hhHHHHhhhhhhhhhhhhhhhHHHHHHHHhH
Q 035696 43 IKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNS---LRSFLARRVSTHSISRVAGSIETEIQAWIDR 119 (405)
Q Consensus 43 i~ALleLe~e~~~ils~dP~ls~Ls~~L~~LktL~~~l~~~~g~~~---l~sfl~R~~~~~~isrva~~ie~eiqawiDr 119 (405)
+++|=+|++ -++.-|.+..+..+. +++-|+.+... . .-..|.|++.+..+.-+ +.
T Consensus 19 ~~~L~~l~~----~~~~~~~l~~~~~~~-----lf~~L~~~~~e-~v~~~~~iL~~~l~~~~~~~l------------~~ 76 (503)
T PF10508_consen 19 LEALPELKT----ELSSSPFLERLPEPV-----LFDCLNTSNRE-QVELICDILKRLLSALSPDSL------------LP 76 (503)
T ss_pred HHHHHHHHH----HHhhhhHHHhchHHH-----HHHHHhhcChH-HHHHHHHHHHHHHhccCHHHH------------HH
Confidence 345555555 445555555555555 77777655221 1 12233344433333322 33
Q ss_pred HHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 120 EHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 120 e~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
....-|.+.|..+ +..=..-++.++.+ +.+. +....+++....+++.+=..|.++ ...|.+.++=++..|+
T Consensus 77 ~~~~~L~~gL~h~-----~~~Vr~l~l~~l~~-~~~~-~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 77 QYQPFLQRGLTHP-----SPKVRRLALKQLGR-IARH-SEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHHHHH-HhcC-CHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHh
Confidence 3444555666642 22222222555544 3232 345678888999999988888666 6689999999999998
Q ss_pred hhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhh
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAM 271 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~am 271 (405)
.... -...++.++.+..|..+++. ..|.++..+- ..||- ...+...|.+++++..|+.+|+-+|.-++
T Consensus 148 ~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnal 223 (503)
T PF10508_consen 148 SHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA--SHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNAL 223 (503)
T ss_pred CCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH--hcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHH
Confidence 6433 33446788889999998877 2344444442 36666 77788889999999999999999999999
Q ss_pred hhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 272 DCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 272 dCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
+++-+++. .+...+.|.+.|++.||+.+=
T Consensus 224 ell~~La~--~~~g~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 224 ELLSELAE--TPHGLQYLEQQGIFDKLSNLL 252 (503)
T ss_pred HHHHHHHc--ChhHHHHHHhCCHHHHHHHHH
Confidence 99999999 899999999999999999873
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.15 E-value=0.012 Score=70.36 Aligned_cols=136 Identities=14% Similarity=0.203 Sum_probs=109.0
Q ss_pred HhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhh
Q 035696 166 LKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSI 238 (405)
Q Consensus 166 L~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i 238 (405)
......+.|..+|..+ +..+++++|+++..+...++| +...+.+..+|+-||.+.+- .+-.+|.++....
T Consensus 606 ~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 606 AANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred hccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 3456788999999655 679999999999999865544 46779999999999999887 3556677777644
Q ss_pred cChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhcc
Q 035696 239 KSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSEL 306 (405)
Q Consensus 239 ~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse~ 306 (405)
...-.-.+...|-||-++.+|..+|.++...|+..+--|...|. ....+..+|.|..||++=|+..
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhCC
Confidence 44335567889999999999999999999999998888877774 4566678899999999988763
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.40 E-value=0.016 Score=44.80 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=67.3
Q ss_pred ccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHH
Q 035696 214 PTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEA 285 (405)
Q Consensus 214 ~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~ 285 (405)
..|+.|+.++.= .+..+|..+.. .+|- .+.+...|-||.++.+|..+|.+++..++.|+-.|+..+ .+.
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~ 83 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSA--GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP-EDN 83 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHH
Confidence 356666655554 23344444333 2244 888888899999999999999999999999999999854 578
Q ss_pred HHHHHHhHHHHHHHHHhh
Q 035696 286 IDAMLEQGLVKKLVELQR 303 (405)
Q Consensus 286 IEaML~~glVeKLv~LqR 303 (405)
.+.+...|+++.|+.+-.
T Consensus 84 ~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HHHHHHCCChHHHHHHHh
Confidence 888999999999999873
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.32 E-value=0.0081 Score=62.15 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=142.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh
Q 035696 100 HSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC 179 (405)
Q Consensus 100 ~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~ 179 (405)
..||-++..=-.-|||-||--.-.+||..|..++..- +--+|.-.=++| .|-|-+-|- |.+-+..+.+-.+|.
T Consensus 265 WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i-----qtPalR~vGNIV-TG~D~QTqv-iI~~G~L~a~~~lLs 337 (526)
T COG5064 265 WAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI-----QTPALRSVGNIV-TGSDDQTQV-IINCGALKAFRSLLS 337 (526)
T ss_pred HHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc-----cCHHHHhhcCee-ecCccceeh-heecccHHHHHHHhc
Confidence 3455555555567999999999999999998642111 222344444544 777777664 457777888888898
Q ss_pred CCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHH--------HHHHHHHhhcChh-HHHHHhcC
Q 035696 180 NPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSK--------VLCELIKSIKSPL-VDEIESNG 250 (405)
Q Consensus 180 ~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~--------vL~~Li~~i~spL-vDei~~~G 250 (405)
.|.. .||.++++.|+..- .|.---+.-|...++++-||..++..-|+ +++-.--..+.|= +.-+.++|
T Consensus 338 ~~ke--~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG 414 (526)
T COG5064 338 SPKE--NIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQG 414 (526)
T ss_pred Chhh--hhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHcc
Confidence 8855 89999999999876 66666778899999999999999874443 2333333445564 66678999
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcc--------cHH-HHHHHHH-hHHHHHHHHHhhhccC
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFG--------RKE-AIDAMLE-QGLVKKLVELQRSELG 307 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~G--------rKe-~IEaML~-~glVeKLv~LqRse~g 307 (405)
.|.-+-++|+-.|-++-.+++||+=-|--.| -+. .-+-|.+ .|-+++.-.+|-|...
T Consensus 415 ~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~ 481 (526)
T COG5064 415 FIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNR 481 (526)
T ss_pred chhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence 9999999999999999999999975543333 222 3445655 7888899999977653
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.14 Score=54.51 Aligned_cols=197 Identities=17% Similarity=0.256 Sum_probs=146.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHH
Q 035696 97 VSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLET 176 (405)
Q Consensus 97 ~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~ 176 (405)
.....+...|+.=...=++.||--.+--++.-|+. .+++=.-++.--+.+. -|..|.++|.+|+.++..-|-.
T Consensus 129 eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-----~~~~v~eQavWALgNI--agds~~~Rd~vl~~g~l~pLl~ 201 (514)
T KOG0166|consen 129 EAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-----PSADVREQAVWALGNI--AGDSPDCRDYVLSCGALDPLLR 201 (514)
T ss_pred HHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-----CcHHHHHHHHHHHhcc--ccCChHHHHHHHhhcchHHHHH
Confidence 34556666777666777888999889889999986 4554444555556663 4788999999999999999888
Q ss_pred HHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHH---HHHHH-hhcChh--HHHHHhcC
Q 035696 177 ILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVL---CELIK-SIKSPL--VDEIESNG 250 (405)
Q Consensus 177 ~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL---~~Li~-~i~spL--vDei~~~G 250 (405)
++..+.- -+...+.+++++.|- -||+|==-..-..|+.++|...-.-.=-.|| |+.|. .-.+|- ++-....|
T Consensus 202 ~l~~~~~-~~~lRn~tW~LsNlc-rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 202 LLNKSDK-LSMLRNATWTLSNLC-RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred Hhccccc-hHHHHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 8855522 468889999999986 6887544444556666666655444333333 33333 333444 99999999
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhh
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQR 303 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqR 303 (405)
-+||+|.+|-..+.+++.+|+-.+=-| ..|.-+-...|+..|++.-|..|=.
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNI-vtG~d~QTq~vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNI-VTGSDEQTQVVINSGALPVLSNLLS 331 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccce-eeccHHHHHHHHhcChHHHHHHHhc
Confidence 999999999999999999888776542 3899999999999999999988875
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.057 Score=57.28 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=111.4
Q ss_pred ChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc--------chHH
Q 035696 158 SRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST--------HSSK 229 (405)
Q Consensus 158 D~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~--------~s~~ 229 (405)
..+--++++.+++.++|-.+|..+ +.+|+--+=-+|-. |=+|-|...-.|+..+.++.|-.+++- .|--
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGN-IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGN-IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccc-eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 344456788999999999999544 44566333333333 226666666678888899999888884 3444
Q ss_pred HHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 230 VLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 230 vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
.+.++.. |.+- ++.+...|.+|.+|++|.+.|.++|.-|.--|.-+.--|+.+-|..|.+.|+|+-|..|=
T Consensus 345 ~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 345 TISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred HHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 5555555 7776 999999999999999999999999999999999999999999999999999999998775
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.31 Score=50.87 Aligned_cols=177 Identities=18% Similarity=0.293 Sum_probs=140.8
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.+-+|++.|-. ++-++++++..+|...+|.--.|-+|..| .+++.+++=..+. ....+-..=++|+++...+
T Consensus 72 elp~lt~~l~S-----dDie~q~qav~kFR~~LS~E~~PPIq~VI-daGvVpRfvefm~-~~q~~mlqfEAaWalTNia- 143 (526)
T COG5064 72 ELPQLTQQLFS-----DDIEQQLQAVYKFRKLLSKETSPPIQPVI-DAGVVPRFVEFMD-EIQRDMLQFEAAWALTNIA- 143 (526)
T ss_pred hhHHHHHHHhh-----hHHHHHHHHHHHHHHHhccccCCCchhHH-hccccHHHHHHHH-hcchhHHHHHHHHHHhhhc-
Confidence 35677887773 67889999999999999988888888754 6788888887773 3334456779999999988
Q ss_pred hcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcC-----hh-HHHHHhcCchHHHHHhhccCcchhhH------
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKS-----PL-VDEIESNGEIPKIISLLDMKDLQMKL------ 268 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~s-----pL-vDei~~~GeIpkiislLdskdl~~r~------ 268 (405)
.|-.---+.|.....|+-+|.|.+...-.|..|-|-+.|. +- -|-++++|-.+-++++|.+.-.++..
T Consensus 144 SGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 144 SGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred cCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 7888888899999999999999999999999998888763 44 78899999988888888766443221
Q ss_pred -----------------------------------hhhhhhhhhhhc--ccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 269 -----------------------------------LAMDCILEIGYF--GRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 269 -----------------------------------~amdCileIgy~--GrKe~IEaML~~glVeKLv~LqRse 305 (405)
+-+|-..-|.|+ |--|||.+.|..|.-.|||||=-.+
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence 123444456776 8899999999999999999997443
No 10
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.34 E-value=0.22 Score=47.94 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=126.6
Q ss_pred HHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHH
Q 035696 115 AWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYS 194 (405)
Q Consensus 115 awiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~ 194 (405)
..+|...++.|++.|+. ..+.--+-+++.-+-+ -+..|.-|+.|-..+..+.++.+|.+| +.+||+.+-.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~----t~dp~i~e~al~al~n---~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~a 77 (254)
T PF04826_consen 7 NILEAQELQKLLCLLES----TEDPFIQEKALIALGN---SAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNA 77 (254)
T ss_pred CCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHh---hccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHH
Confidence 35788999999999995 2332223333333333 244568999999999999999999887 67999999888
Q ss_pred HHHHHhhcCCceeeeecccccHHHHHHhccc------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhH
Q 035696 195 IASLIRFNKDVFVGQVLMGPTVQALLTMSST------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKL 268 (405)
Q Consensus 195 v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~ 268 (405)
+..|+-.-.+.=..+.....+....++ ..| +++++|.+|- -.+-.+.+..+ -||.++.+|.+.+-++|+
T Consensus 78 L~Nls~~~en~~~Ik~~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLt---v~~~~~~~l~~-~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 78 LNNLSVNDENQEQIKMYIPQVCEETVS-SPLNSEVQLAGLRLLTNLT---VTNDYHHMLAN-YIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred HHhcCCChhhHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHccC---CCcchhhhHHh-hHHHHHHHHHcCChHHHH
Confidence 888764333322223322222222222 122 5667777662 22224577755 699999999999999999
Q ss_pred hhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh-hhccCCchhhH-HHHH
Q 035696 269 LAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ-RSELGGDLIEM-ERFE 317 (405)
Q Consensus 269 ~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq-Rse~g~~li~~-~~~~ 317 (405)
-++-+++-++. .......|+..+....||.|= +++.+..++.. ..|.
T Consensus 153 ~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 153 QVLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred HHHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 99999887765 556689999999999999874 44455555554 4443
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.40 E-value=1.5 Score=45.46 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=115.3
Q ss_pred HHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCC
Q 035696 125 LTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKD 204 (405)
Q Consensus 125 Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkd 204 (405)
+...|++ ++.|.+.+..+.-.|+.+.+++.-- -.+.-+.|...|..| +..||..++..|..+++.+ +
T Consensus 43 lf~~L~~------~~~e~v~~~~~iL~~~l~~~~~~~l----~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~-~ 109 (503)
T PF10508_consen 43 LFDCLNT------SNREQVELICDILKRLLSALSPDSL----LPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHS-E 109 (503)
T ss_pred HHHHHhh------cChHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC-H
Confidence 5555554 2445566666777777776665442 445556777778655 5789999999998888544 5
Q ss_pred ceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhh
Q 035696 205 VFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILE 276 (405)
Q Consensus 205 vfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdCile 276 (405)
..+..+....+++.++....- .|.++|..|.. .|. .+.++..+.++.+.+++...|--+|.-.++++.+
T Consensus 110 ~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~---~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~ 186 (503)
T PF10508_consen 110 GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS---HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVE 186 (503)
T ss_pred HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC---CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 566777777777777655443 55666666554 455 7888888889999999998666667778888888
Q ss_pred hhhcccHHHHHHHHHhHHHHHHHHHhhh
Q 035696 277 IGYFGRKEAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 277 Igy~GrKe~IEaML~~glVeKLv~LqRs 304 (405)
|+-. .-+..+.....|++.+++..=.+
T Consensus 187 i~~~-S~~~~~~~~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 187 IASH-SPEAAEAVVNSGLLDLLLKELDS 213 (503)
T ss_pred HHhc-CHHHHHHHHhccHHHHHHHHhcC
Confidence 8644 35777888889999999884433
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.03 E-value=0.25 Score=54.20 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=74.6
Q ss_pred ccccHHHHHHhcccchHHHHHHHHHhhcChh-----HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHH
Q 035696 212 MGPTVQALLTMSSTHSSKVLCELIKSIKSPL-----VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAI 286 (405)
Q Consensus 212 mg~~V~aLI~m~s~~s~~vL~~Li~~i~spL-----vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~I 286 (405)
.-.+|+-||++..-.+..+|...+..++.=- -++|.+.|-||+++.+|++++..+...|+..++-+++-. +.-
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R 365 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELR 365 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHH
Confidence 4567888888888777777775444433222 688999999999999999999999999999999999864 567
Q ss_pred HHHHHhHHHHHHHHHhhh
Q 035696 287 DAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 287 EaML~~glVeKLv~LqRs 304 (405)
..|.+.|+|.||+.|=..
T Consensus 366 ~~mV~~GlIPkLv~LL~d 383 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKD 383 (708)
T ss_pred HHHHHCCCcHHHHHHhCC
Confidence 899999999999998753
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.83 E-value=22 Score=39.54 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=151.6
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHchhccccccccCCCCchhHHHHHHHHHHHHHHHhhcCCCCchhHHHH
Q 035696 15 NVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLA 94 (405)
Q Consensus 15 ~vLeaLk~As~~lq~~~~~~~~~~~~~ai~ALleLe~e~~~ils~dP~ls~Ls~~L~~LktL~~~l~~~~g~~~l~sfl~ 94 (405)
-++..|.+.|.|=.+.+.+..++- -|.+-.++-...+... ++++-+|---|+.=+.-.+-+ +.|+ ||++++.
T Consensus 389 val~iLy~LS~dd~~r~~f~~Tdc-Ip~L~~~Ll~~~~~~v----~~eliaL~iNLa~~~rnaqlm--~~g~-gL~~L~~ 460 (708)
T PF05804_consen 389 VALKILYNLSMDDEARSMFAYTDC-IPQLMQMLLENSEEEV----QLELIALLINLALNKRNAQLM--CEGN-GLQSLMK 460 (708)
T ss_pred HHHHHHHHhccCHhhHHHHhhcch-HHHHHHHHHhCCCccc----cHHHHHHHHHHhcCHHHHHHH--HhcC-cHHHHHH
Confidence 367778888888777776644432 2333222211111111 222333333333323222222 2343 7999998
Q ss_pred hhhhhhhh-----hhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhc
Q 035696 95 RRVSTHSI-----SRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSK 169 (405)
Q Consensus 95 R~~~~~~i-----srva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sk 169 (405)
|-+.++.. -|-.+.=+...|+-+. +.|.+|++.+.. ..+++-++..|-=+-+ + .-.|.+.-.++-+.+
T Consensus 461 ra~~~~D~lLlKlIRNiS~h~~~~k~~f~-~~i~~L~~~v~~----~~~ee~~vE~LGiLaN-L-~~~~ld~~~ll~~~~ 533 (708)
T PF05804_consen 461 RALKTRDPLLLKLIRNISQHDGPLKELFV-DFIGDLAKIVSS----GDSEEFVVECLGILAN-L-TIPDLDWAQLLQEYN 533 (708)
T ss_pred HHHhcccHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHhhc----CCcHHHHHHHHHHHHh-c-ccCCcCHHHHHHhCC
Confidence 87765431 1111111223344332 378899999986 4578888888887777 4 234667778888899
Q ss_pred hHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccch---------HHHHHHHHHhhcC
Q 035696 170 VFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHS---------SKVLCELIKSIKS 240 (405)
Q Consensus 170 lf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s---------~~vL~~Li~~i~s 240 (405)
+.+.|..+|-...+...+--++...+..+++ -+-|-+.+...++|..||.+...+. ..|+.++++- .
T Consensus 534 llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~ 609 (708)
T PF05804_consen 534 LLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--E 609 (708)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--h
Confidence 9999999997666666677777766666653 2334455557899999999988733 4566666663 4
Q ss_pred hhHHHHHh-cCchHHHHHhhccCcchhhHhhhhhhhhhhhc
Q 035696 241 PLVDEIES-NGEIPKIISLLDMKDLQMKLLAMDCILEIGYF 280 (405)
Q Consensus 241 pLvDei~~-~GeIpkiislLdskdl~~r~~amdCileIgy~ 280 (405)
+.-+.|.+ ++-+..+|.++..++..+|-++=.|+-=|+.+
T Consensus 610 ~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 610 ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44566655 56667899999999999999876654444444
No 14
>PRK09687 putative lyase; Provisional
Probab=86.53 E-value=18 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=15.0
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhh
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEI 277 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileI 277 (405)
-||-++.+|..+|..+|..|+..+=.+
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 355555666555555555555555444
No 15
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.89 E-value=1.2 Score=30.74 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 243 VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 243 vDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
.+.|...|-||.++.+|.+.|..++.-|.-++-.|+
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999988876553
No 16
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.01 E-value=2.3 Score=29.38 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=35.4
Q ss_pred ChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 158 SRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 158 D~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
|++..+.|..++.++.|=.+|. +.+..|++++++++..|.+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence 5778899999999999999997 3367899999999998863
No 17
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.84 E-value=12 Score=35.96 Aligned_cols=159 Identities=15% Similarity=0.211 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHhh------chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeeccc
Q 035696 140 DELVKLLTQFEDRVSQGFSRELQDLVLKS------KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMG 213 (405)
Q Consensus 140 ~e~v~~L~efe~rvsqgfD~~lQdliL~s------klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg 213 (405)
++.++-+--+.+-+ =..||...++++.. ..|..+=.+|.++ ...|...+++.++.|+++++....+.+ .
T Consensus 71 ~d~v~yvL~li~dl-l~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~ 145 (312)
T PF03224_consen 71 DDTVQYVLTLIDDL-LSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLV--K 145 (312)
T ss_dssp HHHHHHHHHHHHHH-HH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHH--H
T ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHhcccccchhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchH--H
Confidence 34555444333334 23466777777762 2455555555444 567999999999999999999887732 2
Q ss_pred ccHHHHHHhccc--ch------HHHHHHHHHhhcChh-HHHHHhcCchHHHHHhh-------ccCcchhhHhhhhhhhhh
Q 035696 214 PTVQALLTMSST--HS------SKVLCELIKSIKSPL-VDEIESNGEIPKIISLL-------DMKDLQMKLLAMDCILEI 277 (405)
Q Consensus 214 ~~V~aLI~m~s~--~s------~~vL~~Li~~i~spL-vDei~~~GeIpkiislL-------dskdl~~r~~amdCileI 277 (405)
..++-++.+.+- .+ +-++..|...-+.|- =.-+..+|-++.++.+| ...++.+..-++-|+--+
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 233444433221 11 444555555555665 44455688999999999 233788888899999998
Q ss_pred hhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 278 GYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 278 gy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
.| .+++++.|.+.++|-.|+.+=|.-
T Consensus 226 SF--~~~~~~~~~~~~~i~~L~~i~~~~ 251 (312)
T PF03224_consen 226 SF--EPEIAEELNKKYLIPLLADILKDS 251 (312)
T ss_dssp TT--SHHHHHHHHTTSHHHHHHHHHHH-
T ss_pred hc--CHHHHHHHhccchHHHHHHHHHhc
Confidence 88 478999999999999999876443
No 18
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=14 Score=39.39 Aligned_cols=162 Identities=21% Similarity=0.285 Sum_probs=116.1
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
-|..||....+ +++.-+.+ .-+.=|. -+-|.++|.-|.+++-.+.|=.+|.+|. -..==.+-|+|
T Consensus 252 lv~~Lv~Lmd~-----~s~kvkcq--A~lALrn-lasdt~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCI----- 316 (550)
T KOG4224|consen 252 LVPALVDLMDD-----GSDKVKCQ--AGLALRN-LASDTEYQREIVEAGSLPLLVELLQSPM--GPLILASVACI----- 316 (550)
T ss_pred hHHHHHHHHhC-----CChHHHHH--HHHHHhh-hcccchhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHH-----
Confidence 45556665555 44444443 3443343 4569999999999999999999996662 12222233333
Q ss_pred hcCCceeeeecccccHHH-----HHHhc--------ccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhh
Q 035696 201 FNKDVFVGQVLMGPTVQA-----LLTMS--------STHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMK 267 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~a-----LI~m~--------s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r 267 (405)
++.-|++.=.++|+.+ ||.+. +|+|..+|+.|-.+-... +..|...|-|||++.|+.-..+..|
T Consensus 317 --rnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 317 --RNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-VSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred --hhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-hHHHhhcCchHHHHHHHhcCChhHH
Confidence 2344666667777777 77764 558899999887632221 7889999999999999999999999
Q ss_pred HhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 268 LLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 268 ~~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
.---.|+-.++|-- +-=++++..|++-.|..+-
T Consensus 394 seisac~a~Lal~d--~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 394 SEISACIAQLALND--NDKEALLDSGIIPILIPWT 426 (550)
T ss_pred HHHHHHHHHHHhcc--ccHHHHhhcCCcceeeccc
Confidence 88888999999864 3457899999999888776
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.80 E-value=34 Score=38.23 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=17.2
Q ss_pred HHHHHhhccCcchhhHhhhhhhhhhhhcccHHHH
Q 035696 253 PKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAI 286 (405)
Q Consensus 253 pkiislLdskdl~~r~~amdCileIgy~GrKe~I 286 (405)
+.++..|...|+.+|..|+..+ +.+|..+++
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL---~~l~~~~a~ 840 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARAL---AGAAADVAV 840 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHH---HhccccchH
Confidence 4456666666666666666554 333444444
No 20
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.63 E-value=38 Score=33.50 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=61.1
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCC--ceee---eecc-----------c--ccH-----HHHHHhccc
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKD--VFVG---QVLM-----------G--PTV-----QALLTMSST 225 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkd--vfVg---~vLm-----------g--~~V-----~aLI~m~s~ 225 (405)
.+++.|..++.|++-+..+|..|+.++.-+..++++ --+. ..+. | |.| .+++ +
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~----~ 204 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV----A 204 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH----H
Confidence 477888999989887888999887666555544332 1111 1111 0 000 1111 1
Q ss_pred chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhccc
Q 035696 226 HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGR 282 (405)
Q Consensus 226 ~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~Gr 282 (405)
+|+.+-.-|+......-+... ...-+|+++.+|++.|+.+|.+|=++|-=|-+.+|
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 233333333332222212222 12349999999999999999999887654433333
No 21
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=29 Score=35.78 Aligned_cols=135 Identities=21% Similarity=0.234 Sum_probs=92.3
Q ss_pred CCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeeccccc
Q 035696 136 GGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPT 215 (405)
Q Consensus 136 ~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~ 215 (405)
..+-+++..+|.+||.=+++ .| .-.|++--..+-++|- .|-++ .-.||+-+|++|...+..|.. ..-+|+.+..
T Consensus 94 s~~le~ke~ald~Le~lve~-iD-nAndl~~~ggl~~ll~-~l~~~--~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-ID-NANDLISLGGLVPLLG-YLENS--DAELRELAARVIGTAVQNNPK-SQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hh-hHHhHhhccCHHHHHH-HhcCC--cHHHHHHHHHHHHHHHhcCHH-HHHHHHHccc
Confidence 34556667777777665533 11 1234444444444444 55332 557999999999999966643 3456777778
Q ss_pred HHHHHHhccc--------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhcc--CcchhhHhhhhhhhhh
Q 035696 216 VQALLTMSST--------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDM--KDLQMKLLAMDCILEI 277 (405)
Q Consensus 216 V~aLI~m~s~--------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLds--kdl~~r~~amdCileI 277 (405)
-..|+.+.+- +|+.|+++||+-. -|-.++++..+=..=++..|.+ .+++++..++-.+-.+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~-~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNN-KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcC-cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 8888888765 7889999999833 2448888887778889999999 6788887777665444
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.35 E-value=9.7 Score=34.07 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=75.1
Q ss_pred CCChHHHHHHHHHHHHHHhccCChHHHHHH---HhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecc
Q 035696 136 GGNVDELVKLLTQFEDRVSQGFSRELQDLV---LKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLM 212 (405)
Q Consensus 136 ~~~e~e~v~~L~efe~rvsqgfD~~lQdli---L~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLm 212 (405)
..+-++.+.+|+++...+.++......+.+ ++ .+...+-..+.|. .-+|-..++.++..|+..-+..| .++ .
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~-~~~-~ 92 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHF-EPY-A 92 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGG-HHH-H
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhH-HHH-H
Confidence 577888999999999988666222222221 22 2333333333221 11466677888888888877763 222 4
Q ss_pred cccHHHHHHhccc-------chHHHHHHHHHhhc-ChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 213 GPTVQALLTMSST-------HSSKVLCELIKSIK-SPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 213 g~~V~aLI~m~s~-------~s~~vL~~Li~~i~-spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
..+++.|+...+- .+..+|..++.... .|-+ .++-+...+..|+..+|..++.|+..+-
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4566667666444 67888888888666 2322 1345566789999999999999998873
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.90 E-value=3 Score=27.66 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=25.0
Q ss_pred hHHHHHhhccCcchhhHhhhhhhhhhhh
Q 035696 252 IPKIISLLDMKDLQMKLLAMDCILEIGY 279 (405)
Q Consensus 252 IpkiislLdskdl~~r~~amdCileIgy 279 (405)
+|-++++|..+++++|..|..|+-+|+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999988864
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.44 E-value=59 Score=31.42 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=77.4
Q ss_pred hhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhc-------cc----chHHHHHHHH-HhhcChhHHHHHhcCchHH
Q 035696 187 LREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMS-------ST----HSSKVLCELI-KSIKSPLVDEIESNGEIPK 254 (405)
Q Consensus 187 VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~-------s~----~s~~vL~~Li-~~i~spLvDei~~~GeIpk 254 (405)
+..-+.-+++.|.+ .+.|=-.|.....|+.|+... .. -.|+++.-+- -+.-.+.+.++...+.||.
T Consensus 166 ~~~~av~~L~~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~ 243 (312)
T PF03224_consen 166 LQYIAVQCLQNLLR--SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPL 243 (312)
T ss_dssp --HHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHHHHHhC--cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHH
Confidence 33444455555542 222333334456666666655 12 3454443333 2334445899999999999
Q ss_pred HHHhhccC-cchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhccCCc
Q 035696 255 IISLLDMK-DLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGD 309 (405)
Q Consensus 255 iislLdsk-dl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse~g~~ 309 (405)
++.++... .-|+--+++-++.-+.-.+.+++++.|+..|+.+-|--|+..+.+++
T Consensus 244 L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~De 299 (312)
T PF03224_consen 244 LADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDE 299 (312)
T ss_dssp HHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCH
Confidence 99988654 56666778889999999999999999999999999999996555433
No 25
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.18 E-value=6.4 Score=25.86 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 243 VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 243 vDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
...|.+.|-||.++.+|.+.|.+++..|..++--|+
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 345778899999999999999999999998887665
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.48 E-value=5.9 Score=29.87 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=29.5
Q ss_pred CchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHH
Q 035696 250 GEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLE 291 (405)
Q Consensus 250 GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~ 291 (405)
.-+|.++.+|..+|..+|..|..- +|.+|.+++++.|.+
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~a---L~~i~~~~~~~~L~~ 69 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARA---LGRIGDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHH---HHCCHHHHTHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH---HHHhCCHHHHHHHHH
Confidence 358999999999999888776554 566677777776654
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=68.71 E-value=8.6 Score=28.98 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=28.1
Q ss_pred hHHHHHhh-ccCcchhhHhhhhhhhhhhhcccHHHHHHH
Q 035696 252 IPKIISLL-DMKDLQMKLLAMDCILEIGYFGRKEAIDAM 289 (405)
Q Consensus 252 IpkiislL-dskdl~~r~~amdCileIgy~GrKe~IEaM 289 (405)
||.++..| ..+|..+|..+..|+- ++|..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~~~~~~~~~~L 36 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---ELGDPEAIPAL 36 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---CCTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---HcCCHhHHHHH
Confidence 78999999 8899999999999876 55666665443
No 28
>PRK09687 putative lyase; Provisional
Probab=67.82 E-value=24 Score=34.23 Aligned_cols=101 Identities=11% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcC
Q 035696 171 FSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNG 250 (405)
Q Consensus 171 f~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~G 250 (405)
+..|...+.|+ +..||..+++++. +.+ ....|+.|+.+..=..+.|=+.-+++.|.- ......
T Consensus 130 ~~~l~~~~~D~--~~~VR~~a~~aLg---~~~---------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---~~~~~~ 192 (280)
T PRK09687 130 VEQSQITAFDK--STNVRFAVAFALS---VIN---------DEAAIPLLINLLKDPNGDVRNWAAFALNSN---KYDNPD 192 (280)
T ss_pred HHHHHHHhhCC--CHHHHHHHHHHHh---ccC---------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC---CCCCHH
Confidence 34455556666 5578887776663 222 234788888888776667777777776643 111223
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHH
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLE 291 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~ 291 (405)
-+|-++..|...+..+|..|..- +|.+|...+|+.+++
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~a---Lg~~~~~~av~~Li~ 230 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIG---LALRKDKRVLSVLIK 230 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHH---HHccCChhHHHHHHH
Confidence 46678888888888887766544 466788888887765
No 29
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.22 E-value=55 Score=35.19 Aligned_cols=143 Identities=13% Similarity=0.273 Sum_probs=105.1
Q ss_pred cCChHHHHHHHhhc--hHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHH
Q 035696 156 GFSRELQDLVLKSK--VFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCE 233 (405)
Q Consensus 156 gfD~~lQdliL~sk--lf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~ 233 (405)
|.|++-+..+-++. +.+.|=.+..++ |.+|+=|++.|+-.|+ ...-|.-.+....-++-||.+.+-....-+-.
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~--s~kvkcqA~lALrnla--sdt~Yq~eiv~ag~lP~lv~Llqs~~~plila 311 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDDG--SDKVKCQAGLALRNLA--SDTEYQREIVEAGSLPLLVELLQSPMGPLILA 311 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhCC--ChHHHHHHHHHHhhhc--ccchhhhHHHhcCCchHHHHHHhCcchhHHHH
Confidence 66888888888877 888888888766 6789999999988876 34567777777777777777776654444444
Q ss_pred HHHhhcChhHH-----HHHhcCchHHHHHhhccCcch-hhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhh
Q 035696 234 LIKSIKSPLVD-----EIESNGEIPKIISLLDMKDLQ-MKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQR 303 (405)
Q Consensus 234 Li~~i~spLvD-----ei~~~GeIpkiislLdskdl~-~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqR 303 (405)
=|+-|+..-+. -|...|.+.-+|.+|+++|-. ++-.|++-+-+++-.-++. +-...+.|-|+||.||-|
T Consensus 312 sVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 312 SVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-VSVIRESGAIPKLIELLL 386 (550)
T ss_pred HHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-hHHHhhcCchHHHHHHHh
Confidence 45545432222 244568888899999999887 9999999999988654443 344567899999999874
No 30
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=65.86 E-value=8.8 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=22.8
Q ss_pred hHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 170 VFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 170 lf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
+++.+-..|.|| +..||..+++++..+++
T Consensus 1 llp~l~~~l~D~--~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP--SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S--SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 356667778888 77999999999999875
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.76 E-value=51 Score=36.85 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=51.2
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHh
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIES 248 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~ 248 (405)
..++.|...|.|+ ...||..++.++..+... -|..++|+.+..-....|=...+...+. ..
T Consensus 652 ~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~-----------~~~~~~L~~~L~~~d~~VR~~A~~aL~~------~~ 712 (897)
T PRK13800 652 GFGPALVAALGDG--AAAVRRAAAEGLRELVEV-----------LPPAPALRDHLGSPDPVVRAAALDVLRA------LR 712 (897)
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc-----------cCchHHHHHHhcCCCHHHHHHHHHHHHh------hc
Confidence 3567777888666 557999888887666421 1223455555444333222222211110 01
Q ss_pred cCchHHHHHhhccCcchhhHhhhhhhhhh
Q 035696 249 NGEIPKIISLLDMKDLQMKLLAMDCILEI 277 (405)
Q Consensus 249 ~GeIpkiislLdskdl~~r~~amdCileI 277 (405)
.|..+.++..|..+|+.+|..|+..+-.+
T Consensus 713 ~~~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 713 AGDAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 23455677888888888888887776554
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.44 E-value=56 Score=33.84 Aligned_cols=119 Identities=24% Similarity=0.225 Sum_probs=80.7
Q ss_pred CChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc---------ch
Q 035696 157 FSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST---------HS 227 (405)
Q Consensus 157 fD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~---------~s 227 (405)
++|..|..|+..+-...|-.+|. .+-++.+|..+=|||.+|+|-|+.. .-+|+--+=...|+..++- .+
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls-~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~ 231 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILS-SDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQSNNTSVKLKRKA 231 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHc-cCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHcCCcchHHHHHH
Confidence 69999999999997777777775 6668899999999999999887754 4566666667788877776 33
Q ss_pred HHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 228 SKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 228 ~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
...++.|+..-++- -|.+-..|.---++++...-|...+..+++-++...
T Consensus 232 ~~Ll~~Ll~~~~s~-~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 232 LFLLSLLLQEDKSD-EDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHhhhhh-hhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 34444444433322 223333444444556666667777777777666543
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=57.19 E-value=58 Score=29.14 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHH
Q 035696 140 DELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQAL 219 (405)
Q Consensus 140 ~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aL 219 (405)
.+....++++-.++...|++-+..++ +.|=..+.++ .+.||+.+.-++..++..-. +-..++ +..+
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l------~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~--~~~~~~----~~~l 136 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILL------PPLLKKLGDS--KKFIREAANNALDAIIESCS--YSPKIL----LEIL 136 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHH------HHHHHGGG-----HHHHHHHHHHHHHHHTTS---H--HHH----HHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHH------HHHHHHHccc--cHHHHHHHHHHHHHHHHHCC--cHHHHH----HHHH
Confidence 36677788888888888887744432 3333344444 45699999999999997544 111111 1222
Q ss_pred HHhccc-------chHHHHHHHHHhhc---ChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhc
Q 035696 220 LTMSST-------HSSKVLCELIKSIK---SPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYF 280 (405)
Q Consensus 220 I~m~s~-------~s~~vL~~Li~~i~---spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~ 280 (405)
...+.- .+...|..++...+ ..+-....-...++-|..+|.-++..+|..|-.|+..+-..
T Consensus 137 ~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 137 SQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 222222 34455666666555 11211111133567788899999999999999999888433
No 34
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=56.99 E-value=41 Score=35.53 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=47.7
Q ss_pred HHHHHhcCchHHHHHhhccC-cchhhHhhhhhhhhhhhccc------------HHHHHHHHHhHHHHHHHHHh
Q 035696 243 VDEIESNGEIPKIISLLDMK-DLQMKLLAMDCILEIGYFGR------------KEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 243 vDei~~~GeIpkiislLdsk-dl~~r~~amdCileIgy~Gr------------Ke~IEaML~~glVeKLv~Lq 302 (405)
++-+.+.+.|||+|++|+.+ +..++.-|-+++.+|..+++ .+....+.++..|++|+..=
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~m 127 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIM 127 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHH
Confidence 55566799999999999844 88899999999999977765 66677777777777777543
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=56.91 E-value=42 Score=33.41 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=26.3
Q ss_pred hcCchHHHHHhhccCcchhhHhhhhhhhhhhhcc
Q 035696 248 SNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFG 281 (405)
Q Consensus 248 ~~GeIpkiislLdskdl~~r~~amdCileIgy~G 281 (405)
-..-++.++.||.++|..+|.++++++..|....
T Consensus 265 ~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 265 LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 3445777888888888888888888888877665
No 36
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.97 E-value=2.6e+02 Score=29.17 Aligned_cols=222 Identities=17% Similarity=0.086 Sum_probs=120.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhhcCCCCchhHHHHhhh-hhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCC
Q 035696 58 SEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRV-STHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDG 136 (405)
Q Consensus 58 s~dP~ls~Ls~~L~~LktL~~~l~~~~g~~~l~sfl~R~~-~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~ 136 (405)
+-|=+|.-|.++=.||.+-++-|-..+.. ++...+ ..+ ........+.++-. +.+|=|-..++.|+..|.|. +.
T Consensus 26 ~p~~~l~~la~ldeRL~AhLdgL~~~G~~-a~~~L~-~aL~~d~~~ev~~~aa~a-l~~~~~~~~~~~L~~~L~d~--~~ 100 (410)
T TIGR02270 26 APDYVLEDLAELEERLLAHVDGLVLAGKA-ATELLV-SALAEADEPGRVACAALA-LLAQEDALDLRSVLAVLQAG--PE 100 (410)
T ss_pred CCCCCHHHHHhHHHHHHHHHHHHHHhhHh-HHHHHH-HHHhhCCChhHHHHHHHH-HhccCChHHHHHHHHHhcCC--CH
Confidence 34445577777777777777777766654 433333 333 22222222222222 23454455599999999873 11
Q ss_pred CChHHHHHHHHH-----HHHH---HhccCChHHHHHHHhhch------HHHHHHHHhCCCCCcchhhhhHHHHHHHHhhc
Q 035696 137 GNVDELVKLLTQ-----FEDR---VSQGFSRELQDLVLKSKV------FSLLETILCNPSCSKSLREQSAYSIASLIRFN 202 (405)
Q Consensus 137 ~~e~e~v~~L~e-----fe~r---vsqgfD~~lQdliL~skl------f~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfn 202 (405)
+--.+..++|.+ ..+. +.+.-||.++..++..-- ++.|...|.|+ +..||.+++-++-.|-.-+
T Consensus 101 ~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 101 GLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHE--DALVRAAALRALGELPRRL 178 (410)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCC--CHHHHHHHHHHHHhhcccc
Confidence 122344444432 1222 235558888877764332 66777788655 5678988888776554322
Q ss_pred CCceeeeeccc--cc-----HHHHHHhcccchHHHHHHHHHhhcChh---HHHHHhcC----chHHHHHhhccCcchhhH
Q 035696 203 KDVFVGQVLMG--PT-----VQALLTMSSTHSSKVLCELIKSIKSPL---VDEIESNG----EIPKIISLLDMKDLQMKL 268 (405)
Q Consensus 203 kdvfVg~vLmg--~~-----V~aLI~m~s~~s~~vL~~Li~~i~spL---vDei~~~G----eIpkiislLdskdl~~r~ 268 (405)
.-+..-..+.+ |. +.+|..|..-.+..+|-.+...-++|- .--++..| -++.|+.++...+ +|.
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~ 256 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRR 256 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHH
Confidence 22221122211 11 223333333334444444344444444 23344443 4667777877764 444
Q ss_pred hhhhhhhhhhhcccHHHHHHHHH
Q 035696 269 LAMDCILEIGYFGRKEAIDAMLE 291 (405)
Q Consensus 269 ~amdCileIgy~GrKe~IEaML~ 291 (405)
..+.=+|++|.-.+++.+++
T Consensus 257 ---~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 257 ---EALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred ---HHHHHHHHcCCcchHHHHHH
Confidence 55566789999999888876
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=53.68 E-value=2.2e+02 Score=28.45 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.+..+.+-|.+ .|+.-.--+|.-+-. +. ++++-+ .+++.+..+|.+++ -.||..++.++.++.+
T Consensus 80 ~~n~l~kdl~~-----~n~~~~~lAL~~l~~-i~---~~~~~~-----~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 80 IINSLQKDLNS-----PNPYIRGLALRTLSN-IR---TPEMAE-----PLIPDVIKLLSDPS--PYVRKKAALALLKIYR 143 (526)
T ss_dssp HHHHHHHHHCS-----SSHHHHHHHHHHHHH-H----SHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-----CCHHHHHHHHhhhhh-hc---ccchhh-----HHHHHHHHHhcCCc--hHHHHHHHHHHHHHhc
Confidence 44455555554 444444444554444 32 555543 45777888887763 3899999999999999
Q ss_pred hcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhh
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDC 273 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdC 273 (405)
.+.+.+-.. .++.|..+..- +|..+++.+ +....+ ..=.-...++++..++...++-.+...+++
T Consensus 144 ~~p~~~~~~-----~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~--~~~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 144 KDPDLVEDE-----LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS--YKSLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HCHCCHHGG-----HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH--HTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cCHHHHHHH-----HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch--hhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 988754322 24444444332 444444444 111110 000111123344444445566666666666
Q ss_pred hhhhh
Q 035696 274 ILEIG 278 (405)
Q Consensus 274 ileIg 278 (405)
+-.++
T Consensus 216 l~~~~ 220 (526)
T PF01602_consen 216 LRRYA 220 (526)
T ss_dssp HTTST
T ss_pred HHhcc
Confidence 65443
No 38
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=53.53 E-value=27 Score=38.05 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHchhccccccccCCCCchhHHHHHH-HHHHHHHHHhhcCCCCc
Q 035696 10 APRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLA-DLKTLVQTLHKSRGRNS 88 (405)
Q Consensus 10 ~~~~l~vLeaLk~As~~lq~~~~~~~~~~~~~ai~ALleLe~e~~~ils~dP~ls~Ls~~L~-~LktL~~~l~~~~g~~~ 88 (405)
+++-+.+|+|+++.-+|.|+-|.. +|||+|+ .|+.-+.-|.++++- +
T Consensus 253 naRCIa~L~afqevi~Dy~TP~~k-------------------------------tlsrdLt~~i~~qv~~L~~cRPL-s 300 (556)
T KOG1467|consen 253 NARCIAMLQAFQEVIKDYTTPPEK-------------------------------TLSRDLTAAISPQVSFLTQCRPL-S 300 (556)
T ss_pred cHHHHHHHHHHHHHHHhccCCCcc-------------------------------ccchhhHhhhhhHHHHHhhcCCc-c
Confidence 467899999999999999976642 2333332 244444444455543 2
Q ss_pred -----hhHHHHhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHH
Q 035696 89 -----LRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQD 163 (405)
Q Consensus 89 -----l~sfl~R~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQd 163 (405)
---||.++|+.-.++---..=+.|+|.+|||-.=++.+-+=+ ..-+-++.-++++.-.+-=|+.+-+++
T Consensus 301 ~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~q------aI~q~a~~KI~dgdviltyg~s~vV~~ 374 (556)
T KOG1467|consen 301 ISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQ------AISQHAVTKIQDGDVLLTYGSSSVVNM 374 (556)
T ss_pred chhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhcCCEEEEecchHHHHH
Confidence 345888888877777665666889999999866555544322 233345555666666666777888888
Q ss_pred HHHhhc
Q 035696 164 LVLKSK 169 (405)
Q Consensus 164 liL~sk 169 (405)
.+|..+
T Consensus 375 ill~A~ 380 (556)
T KOG1467|consen 375 ILLEAK 380 (556)
T ss_pred HHHHHH
Confidence 887654
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=52.91 E-value=71 Score=31.05 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=87.4
Q ss_pred HHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhh
Q 035696 194 SIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDC 273 (405)
Q Consensus 194 ~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdC 273 (405)
-++.+...++|||+.. .+++.|+-+++|..= =|-|-..|-|+-|.++|+.++.++|+-|+.|
T Consensus 16 ~Ll~lL~~t~dp~i~e-------~al~al~n~aaf~~n-----------q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~a 77 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQE-------KALIALGNSAAFPFN-----------QDIIRDLGGISLIGSLLNDPNPSVREKALNA 77 (254)
T ss_pred HHHHHHhcCCChHHHH-------HHHHHHHhhccChhH-----------HHHHHHcCCHHHHHHHcCCCChHHHHHHHHH
Confidence 3445555667777653 244555555444332 3445567999999999999999999999999
Q ss_pred hhhhhhcc-cHHHHHHHHHhHHHHHHHHH------hhhccCCchhhHHHHHhhhhcccCCCCCCccchhhhhHHhhhhcC
Q 035696 274 ILEIGYFG-RKEAIDAMLEQGLVKKLVEL------QRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKR 346 (405)
Q Consensus 274 ileIgy~G-rKe~IEaML~~glVeKLv~L------qRse~g~~li~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~ 346 (405)
+-.++.-. +.+.|+ +.-.++.+..+.- |.+-+ .-|..|+- . ....
T Consensus 78 L~Nls~~~en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agL-rlL~nLtv---------~-----------------~~~~ 129 (254)
T PF04826_consen 78 LNNLSVNDENQEQIK-MYIPQVCEETVSSPLNSEVQLAGL-RLLTNLTV---------T-----------------NDYH 129 (254)
T ss_pred HHhcCCChhhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHH-HHHHccCC---------C-----------------cchh
Confidence 98776654 444443 3333444443321 10000 00111100 0 0011
Q ss_pred CCchhHHHHHHHHhhhccCccHHHHHHHHHHHHHHHHHhhcChhhHHHH
Q 035696 347 HPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATI 395 (405)
Q Consensus 347 ~pF~scVarFavqlevgegL~~~EkR~~K~eILrrVReA~~s~ae~AtI 395 (405)
+=++.++..|..-+..|.+ ..|-++|+-.=.-+..++-.-.+
T Consensus 130 ~~l~~~i~~ll~LL~~G~~-------~~k~~vLk~L~nLS~np~~~~~L 171 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSE-------KTKVQVLKVLVNLSENPDMTREL 171 (254)
T ss_pred hhHHhhHHHHHHHHHcCCh-------HHHHHHHHHHHHhccCHHHHHHH
Confidence 3366789999988998887 36677777766666666654443
No 40
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.68 E-value=1.2e+02 Score=26.29 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
++.+.-|-+.|+. +|..+++++|+=+|.-+... ...++..|-..+.-+.|..++.++.....||+...-.|-..
T Consensus 36 k~a~r~l~krl~~-----~n~~v~l~AL~lLe~~vkNc-g~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 36 KDAVRLLKKRLNN-----KNPHVALLALTLLDACVKNC-GSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHC-CHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 5566667777775 78889999999999977554 66777888888888888888877766666998888888777
Q ss_pred Hh-hcCCc
Q 035696 199 IR-FNKDV 205 (405)
Q Consensus 199 vr-fnkdv 205 (405)
.. |.++|
T Consensus 110 ~~~f~~~~ 117 (133)
T smart00288 110 ADAFKNDP 117 (133)
T ss_pred HHHHcCCC
Confidence 65 44443
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=50.14 E-value=13 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=27.7
Q ss_pred ccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 155 QGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 155 qgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
+.....++. .-..+++.|-.+|.|++ ..||..+++++..|
T Consensus 16 ~~~~~~~~~--~~~~~~~~L~~~L~d~~--~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 16 EGCPELLQP--YLPELLPALIPLLQDDD--DSVRAAAAWALGNL 55 (55)
T ss_dssp TTTHHHHHH--HHHHHHHHHHHHTTSSS--HHHHHHHHHHHHCH
T ss_pred cccHHHHHH--HHHHHHHHHHHHHcCCC--HHHHHHHHHHHhcC
Confidence 333444444 45667888888887763 39999999998653
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=50.04 E-value=86 Score=35.22 Aligned_cols=114 Identities=24% Similarity=0.238 Sum_probs=79.8
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcC
Q 035696 124 RLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNK 203 (405)
Q Consensus 124 ~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnk 203 (405)
++++.+.. -+++++|+++..+=+-+ -||++.-- -+++.+-.++|-.++....-+....-|+|-++=.+..--+
T Consensus 13 ~~l~~L~~-----~dpe~lvrai~~~kN~v-ig~~~~K~-~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eq 85 (678)
T KOG1293|consen 13 DLLYRLLH-----LDPEQLVRAIYMSKNLV-IGFTDNKE-TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQ 85 (678)
T ss_pred HHHHhhhc-----CCHHHHHHHHHHhcchh-hcCCCccc-hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhcc
Confidence 45666665 45667899999999955 67766554 5677777777777775554455555555544433332211
Q ss_pred CceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCc-chhhHhhhhhhhhhhhcc
Q 035696 204 DVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKD-LQMKLLAMDCILEIGYFG 281 (405)
Q Consensus 204 dvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskd-l~~r~~amdCileIgy~G 281 (405)
| -+++++.++++|++..+|+.+| .+++..+|.|+=.|-.+-
T Consensus 86 d-------------------------------------~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 86 D-------------------------------------KVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred c-------------------------------------hHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 1 1788889999999999999999 999999999988877665
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.93 E-value=1.4e+02 Score=34.73 Aligned_cols=184 Identities=18% Similarity=0.284 Sum_probs=113.1
Q ss_pred HHHHHHHh------HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhch-HHHHHHHHhCCCC
Q 035696 111 TEIQAWID------REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKV-FSLLETILCNPSC 183 (405)
Q Consensus 111 ~eiqawiD------re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~skl-f~~Le~~L~~~~~ 183 (405)
++.-.||- .++|.-|+..+.. -+-.=.+-+++=|++-+ .---+++||.|+-+|. +..|=.+|.|.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~-----~DF~VR~~aIqLlsall-s~r~~e~q~~ll~~P~gIS~lmdlL~Ds-- 178 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEE-----FDFHVRLYAIQLLSALL-SCRPTELQDALLVSPMGISKLMDLLRDS-- 178 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHh-----hchhhhhHHHHHHHHHH-hcCCHHHHHHHHHCchhHHHHHHHHhhh--
Confidence 44555653 4556666666654 33333344466666644 4557999999999885 55666677766
Q ss_pred CcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-----------chHHHHHHHHHhhcChhHHHH-HhcCc
Q 035696 184 SKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-----------HSSKVLCELIKSIKSPLVDEI-ESNGE 251 (405)
Q Consensus 184 s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-----------~s~~vL~~Li~~i~spLvDei-~~~Ge 251 (405)
...||.++-+.+++|++-|..+= +.|---++-.-|.++-.- -.+.+|+.|++-+-|- +.+ ...|-
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQ-KlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN--Q~~FrE~~~ 255 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQ-KLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN--QNFFREGSY 255 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHH-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch--hhHHhcccc
Confidence 44699999999999998876531 111112222222222221 2455666666654442 333 44569
Q ss_pred hHHHHHhhc---cCc-----c-hhhHhhhhhhhhhhh----cccH-----HHHHHHHHhHHHHHHHHHhhhc
Q 035696 252 IPKIISLLD---MKD-----L-QMKLLAMDCILEIGY----FGRK-----EAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 252 IpkiislLd---skd-----l-~~r~~amdCileIgy----~GrK-----e~IEaML~~glVeKLv~LqRse 305 (405)
|||+..+|. +.| | .-|+.+++|+|+|.- .|.- .|=-+|-+.+++.-|..+==+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 999996554 444 2 448999999999863 3433 2336899999988877665333
No 44
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.75 E-value=39 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 160 ELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 160 ~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
+....+...+.++.|-.+|. +.+..++.+++.++..|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 35566778888888888886 346789999999998875
No 45
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=45.26 E-value=30 Score=27.09 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHH
Q 035696 122 IERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQD 163 (405)
Q Consensus 122 i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQd 163 (405)
+..|...+...+-+....-++++.+.++|.|++.|-|+.+|=
T Consensus 41 l~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl 82 (89)
T PF08542_consen 41 LKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQL 82 (89)
T ss_dssp HHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHH
Confidence 444555555421122334577888999999999999999983
No 46
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.14 E-value=87 Score=36.14 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=73.6
Q ss_pred hhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc---chH---------HHHHHH
Q 035696 167 KSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST---HSS---------KVLCEL 234 (405)
Q Consensus 167 ~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~---~s~---------~vL~~L 234 (405)
++.-|..+=.+|.-. |..|+=+||..+..| .+.-.+|...++| +.. -+|--|
T Consensus 241 ~~~~i~~i~~lL~st--ssaV~fEaa~tlv~l--------------S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 241 KARYIRCIYNLLSST--SSAVIFEAAGTLVTL--------------SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred hhHHHHHHHHHHhcC--CchhhhhhcceEEEc--------------cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHH
Confidence 455555555566433 678888888776544 3444556666665 111 112222
Q ss_pred HHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHH
Q 035696 235 IKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKK 297 (405)
Q Consensus 235 i~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeK 297 (405)
.... ++ ++=.-.|.|--++.+|++.|+..|--++|.++++++.-+-|-|=.||+..+++-
T Consensus 305 ~~l~--~~-~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT 364 (948)
T KOG1058|consen 305 SELK--AL-HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT 364 (948)
T ss_pred HHHh--hh-hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence 2111 11 111134678889999999999999999999999999999999999998776653
No 47
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=42.87 E-value=1.5e+02 Score=33.66 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCCh-HHHHHHHh
Q 035696 117 IDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSR-ELQDLVLK 167 (405)
Q Consensus 117 iDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~-~lQdliL~ 167 (405)
.|.+.|.++++.+.+ ++....+..+.++ +..|+|+ ++..++|+
T Consensus 246 ~~~~~I~~lidAL~~-----~D~a~al~~l~~L---i~~G~dp~~~L~~LL~ 289 (824)
T PRK07764 246 TDSALIDEAVDALAA-----GDGAALFGTVDRV---IEAGHDPRRFAEDLLE 289 (824)
T ss_pred CCHHHHHHHHHHHHc-----CCHHHHHHHHHHH---HHcCCCHHHHHHHHHH
Confidence 477888899999986 5566666665544 3478884 45555555
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.21 E-value=6.7e+02 Score=30.08 Aligned_cols=196 Identities=18% Similarity=0.243 Sum_probs=108.4
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchH
Q 035696 92 FLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVF 171 (405)
Q Consensus 92 fl~R~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf 171 (405)
+-.|...--.||-++-.=..-+..=+|+ .+.-....|+|+ ..+=...++.-+=+ ++.-|-|++|.- -+..+-
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~Dp-----hprVr~AA~naigQ-~stdl~p~iqk~-~~e~l~ 433 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDP-----HPRVRYAALNAIGQ-MSTDLQPEIQKK-HHERLP 433 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCC-----CHHHHHHHHHHHHh-hhhhhcHHHHHH-HHHhcc
Confidence 3456666666666665444444433332 223333445542 11112222222211 344444444432 123333
Q ss_pred HHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChh---------
Q 035696 172 SLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPL--------- 242 (405)
Q Consensus 172 ~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spL--------- 242 (405)
+.|-.++ |+.+..+|.-|+|-++..+..++-..-+.+.|.+=.=+-|--.-+-..-+|.++.+.+|+|.-
T Consensus 434 ~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 434 PALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred HHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4444444 677888999999999999999887766666654322223333333345556666666666532
Q ss_pred -HHHHHhcCchHHHHHhhcc---Ccch-hhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 243 -VDEIESNGEIPKIISLLDM---KDLQ-MKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 243 -vDei~~~GeIpkiislLds---kdl~-~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
.|.+ +|-+..+|-. +|++ +|--+|+|+==|||-.+||.--. +++.+|..|+++|
T Consensus 513 Y~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~-~a~eliqll~~~~ 571 (1075)
T KOG2171|consen 513 YFDRL-----MPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLP-LAEELIQLLLELQ 571 (1075)
T ss_pred HHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHhhc
Confidence 2222 3444444433 3333 45567999999999888876533 5788999999998
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.18 E-value=6.8e+02 Score=30.01 Aligned_cols=226 Identities=18% Similarity=0.287 Sum_probs=118.4
Q ss_pred HHHHhhhhhhcCCCCCCCCCChHHHHHHHchhccccccccCCCCchhHH-----HHHHHHHHHHHH-HhhcCCCCchhH-
Q 035696 19 ALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLS-----QHLADLKTLVQT-LHKSRGRNSLRS- 91 (405)
Q Consensus 19 aLk~As~~lq~~~~~~~~~~~~~ai~ALleLe~e~~~ils~dP~ls~Ls-----~~L~~LktL~~~-l~~~~g~~~l~s- 91 (405)
..|||.+-+|+-... ..-.|++-+++. .+.||....+. +++++ +|+ |-..-- +++||
T Consensus 20 vr~~Ae~~l~~~~~~---~~~l~~L~~i~~--------~~~~p~~Rq~aaVl~Rkl~~~----~w~~l~~e~~-~siks~ 83 (1075)
T KOG2171|consen 20 VRRQAEEALETLAKT---EPLLPALAHILA--------TSADPQVRQLAAVLLRKLLTK----HWSRLSAEVQ-QSIKSS 83 (1075)
T ss_pred HHHHHHHHHHHhhcc---cchHHHHHHHHh--------cCCChHHHHHHHHHHHHHHHH----HhhcCCHHHH-HHHHHH
Confidence 368999999976632 222233333332 46688776654 33333 222 111111 13444
Q ss_pred ----HHHhhhh--hhhhhhhhhhhHHHHH--HHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHH
Q 035696 92 ----FLARRVS--THSISRVAGSIETEIQ--AWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQD 163 (405)
Q Consensus 92 ----fl~R~~~--~~~isrva~~ie~eiq--awiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQd 163 (405)
|.+-... +|++.+|...|.+.+- .|= |-++.|...++.+ +.+.. +-.+..|..+=. -|+..+|-
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~-~~~~r-E~al~il~s~~~----~~~~~~~~ 155 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSP-NPSLR-ESALLILSSLPE----TFGNTLQP 155 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCC-Ccchh-HHHHHHHHhhhh----hhccccch
Confidence 3333322 6777777777765431 353 5677777777764 11222 234444544433 23333321
Q ss_pred HHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhc---CCceeeeecccccHHHHHHhc-----------ccchHH
Q 035696 164 LVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFN---KDVFVGQVLMGPTVQALLTMS-----------STHSSK 229 (405)
Q Consensus 164 liL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfn---kdvfVg~vLmg~~V~aLI~m~-----------s~~s~~ 229 (405)
.+. -+-.++..-+.||+-+ ||-.++=|+.+.+..+ ++.+ -.+.+.++.++-.+ +|.++.
T Consensus 156 ~~~--~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~---~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~ 228 (1075)
T KOG2171|consen 156 HLD--DLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEV---DKFRDLLPSLLNVLQEVIQDGDDDAAKSALE 228 (1075)
T ss_pred hHH--HHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHH---HHHHHHhHHHHHHhHhhhhccchHHHHHHHH
Confidence 110 1223455666777544 9999999999988877 3332 34566666665443 345555
Q ss_pred HHHHHHHhhc---ChhHHHHHhcCchHHHHHhhccC--cchhhHhhhhhhhhhhhc
Q 035696 230 VLCELIKSIK---SPLVDEIESNGEIPKIISLLDMK--DLQMKLLAMDCILEIGYF 280 (405)
Q Consensus 230 vL~~Li~~i~---spLvDei~~~GeIpkiislLdsk--dl~~r~~amdCileIgy~ 280 (405)
+|..|+-+-. +|-+.+|.+ =....-..+ +-.+|..|+.|+.=...+
T Consensus 229 ~l~El~e~~pk~l~~~l~~ii~-----~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 229 ALIELLESEPKLLRPHLSQIIQ-----FSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHhhchHHHHHHHHHHHH-----HHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 5555544221 122233322 112223334 667999999999988877
No 50
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=40.81 E-value=5.6e+02 Score=28.60 Aligned_cols=204 Identities=19% Similarity=0.197 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHhhhhhhhhhhhhhhhHH--------HHHHHHhHHHHHHHHHHhcccCCCCCChH
Q 035696 69 HLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIET--------EIQAWIDREHIERLTKALKDLDGDGGNVD 140 (405)
Q Consensus 69 ~L~~LktL~~~l~~~~g~~~l~sfl~R~~~~~~isrva~~ie~--------eiqawiDre~i~~Lv~~L~d~~~~~~~e~ 140 (405)
-.+-|.+++++++.-.|. ....-+.+.+++-+++--+++.-. =|++.-.+.-+.+|.++.+|- +..-+.
T Consensus 116 ~~~~l~~~~~~~~~~~~~-~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk-~~~~~r- 192 (569)
T KOG1242|consen 116 VSTCLPPLVVLSKGLSGE-YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDK-KSALNR- 192 (569)
T ss_pred HHHHhhhHHHHhhccCHH-HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhccc-chhhcH-
Confidence 455677888887777775 688888899887777665554332 255666778888999999873 222222
Q ss_pred HHHHHHHHHHHH---HhccCChHHHHHHHhhchHHHHHHHH-hCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccH
Q 035696 141 ELVKLLTQFEDR---VSQGFSRELQDLVLKSKVFSLLETIL-CNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTV 216 (405)
Q Consensus 141 e~v~~L~efe~r---vsqgfD~~lQdliL~sklf~~Le~~L-~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V 216 (405)
| .++.-||.- +...|-|-+. +.|=.+| |=..-.|.||+-+.+++-++.+-=-..=|+.+| -|.+
T Consensus 193 e--~~~~a~~~~~~~Lg~~~EPyiv---------~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll-psll 260 (569)
T KOG1242|consen 193 E--AALLAFEAAQGNLGPPFEPYIV---------PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL-PSLL 260 (569)
T ss_pred H--HHHHHHHHHHHhcCCCCCchHH---------hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh-hhhH
Confidence 2 234444432 2333344333 2333444 333336789999999988888554444455554 4667
Q ss_pred HHHHHhccc----chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHH
Q 035696 217 QALLTMSST----HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAML 290 (405)
Q Consensus 217 ~aLI~m~s~----~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML 290 (405)
+.+... .| .|.++|-.|.+.. |-.-+..----||++...|.--..++|..+-.|++.+|.+=.-.-|.+..
T Consensus 261 ~~l~~~-kWrtK~aslellg~m~~~a--p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~i 335 (569)
T KOG1242|consen 261 GSLLEA-KWRTKMASLELLGAMADCA--PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKII 335 (569)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHHHhc--hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 777776 77 6777777777743 33223333457999999999999999999999999998876666665543
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=40.68 E-value=1.4e+02 Score=30.19 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHH
Q 035696 227 SSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVEL 301 (405)
Q Consensus 227 s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~L 301 (405)
-+.||..+++.+-.++ ..++-. .+|=++..|+..|..++..+++++..+-.-. .+.+.-=+ +-||.+|+.|
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl-~sLI~~LL~l 414 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHL-SSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHH-HHHHHHHHhc
Confidence 4889999999887777 565544 7888999999999999999999999887766 66665533 3788888765
No 52
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=39.84 E-value=55 Score=31.73 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCChHHHHHHHchhccccccccCCCCc-hhHHHHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhhhhhhhhhhhHHHHHH
Q 035696 37 EFNSSAIKALLELETESDALLSEDPHL-STLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQA 115 (405)
Q Consensus 37 ~~~~~ai~ALleLe~e~~~ils~dP~l-s~Ls~~L~~LktL~~~l~~~~g~~~l~sfl~R~~~~~~isrva~~ie~eiqa 115 (405)
.++.|.++.|=.|-+|++.|-...|++ .+|+.-+.+=.+-++. -+.|+.+...++.=.+-+ -..-=+.
T Consensus 13 ~~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~---------a~~~l~~k~~~r~~~~~~--~~~~~~~ 81 (335)
T PF08429_consen 13 ESPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEK---------AQQLLSRKQRTRRRNGKA--EDQKSRN 81 (335)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHhcccccccccCCcc--ccccccc
Confidence 345588889989999999988877766 6666666655555555 344444444433211111 0000112
Q ss_pred HHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHh--hchHHHHHHHH
Q 035696 116 WIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLK--SKVFSLLETIL 178 (405)
Q Consensus 116 wiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~--sklf~~Le~~L 178 (405)
..+-+.+..|+..+.. .+-+-.| +..|.++-..+ ..|..+.|+++-+ ..-..-++.+|
T Consensus 82 ~~~l~~l~~Ll~e~~~---L~~~~pE-i~~L~~l~~~v-e~f~~~a~~~L~~~~~~~~~~le~Ll 141 (335)
T PF08429_consen 82 KLTLEELEALLEEIES---LPFDCPE-IDQLKELLEEV-EEFQSRAQEALSDPESPSLEELEELL 141 (335)
T ss_pred cCCHHHHHHHHHHHhc---CCeeCch-HHHHHHHHHHH-HHHHHHHHHHHhccccCCHHHHHHHH
Confidence 2444555556655553 3444455 44455555556 5577777777754 44445556555
No 53
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=37.01 E-value=41 Score=29.15 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=49.2
Q ss_pred hhcCCceeeeecccccHHHHHHhcccch---------HHHHHHHHHhhcC----hh-HHHHHh-cCchHHHHHhhccCcc
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSSTHS---------SKVLCELIKSIKS----PL-VDEIES-NGEIPKIISLLDMKDL 264 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~~s---------~~vL~~Li~~i~s----pL-vDei~~-~GeIpkiislLdskdl 264 (405)
|.+.--||..|+...=+.+|+....... ....+..++-++. +. .+.+.+ .+-|+.|+..|+++++
T Consensus 93 rt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 93 RTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp HHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred ccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 4555556777776666677776665522 2344555544443 23 555555 6689999999999999
Q ss_pred hhhHhhhhhhhhhh
Q 035696 265 QMKLLAMDCILEIG 278 (405)
Q Consensus 265 ~~r~~amdCileIg 278 (405)
++|..+++.+.=++
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765443
No 54
>PTZ00046 rifin; Provisional
Probab=35.08 E-value=45 Score=34.68 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHHHHHHHHhccC------------------ChHHHHHHHhhchHHHHHHH
Q 035696 135 DGGNVDELVKLLTQFEDRVSQGF------------------SRELQDLVLKSKVFSLLETI 177 (405)
Q Consensus 135 ~~~~e~e~v~~L~efe~rvsqgf------------------D~~lQdliL~sklf~~Le~~ 177 (405)
+=+|++|.-++|++|.+|-+|+| |-++|..||+-|+=.-|...
T Consensus 50 nYDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ek 110 (358)
T PTZ00046 50 NYDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEK 110 (358)
T ss_pred CCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999 67899999999996544433
No 55
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.89 E-value=52 Score=34.23 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHhccC------------------ChHHHHHHHhhchHHHHHHH
Q 035696 136 GGNVDELVKLLTQFEDRVSQGF------------------SRELQDLVLKSKVFSLLETI 177 (405)
Q Consensus 136 ~~~e~e~v~~L~efe~rvsqgf------------------D~~lQdliL~sklf~~Le~~ 177 (405)
=+|++|.-++|++|.+|-+|+| |-++|..||+-|+=.-|...
T Consensus 54 YDNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEKeL~ek 113 (353)
T TIGR01477 54 YDNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEKELTEK 113 (353)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999 77899999999996655333
No 56
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.51 E-value=53 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred hccCccHHHHHHHHHHHHHHHHHh
Q 035696 362 VGEGLRQREKRALKQEILLRVREA 385 (405)
Q Consensus 362 vgegL~~~EkR~~K~eILrrVReA 385 (405)
|++-.+++||.++|.+|+..||+-
T Consensus 1 Ma~~~T~eer~eLk~rIvElVRe~ 24 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVREH 24 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHc
Confidence 456789999999999999999984
No 57
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=30.32 E-value=1.1e+02 Score=33.52 Aligned_cols=55 Identities=29% Similarity=0.288 Sum_probs=46.4
Q ss_pred HHHHHhc-CchHHHHHhhccCcchhhHhhhhhhhhh-hhcccHHHHHHHHHhHHHHH
Q 035696 243 VDEIESN-GEIPKIISLLDMKDLQMKLLAMDCILEI-GYFGRKEAIDAMLEQGLVKK 297 (405)
Q Consensus 243 vDei~~~-GeIpkiislLdskdl~~r~~amdCileI-gy~GrKe~IEaML~~glVeK 297 (405)
++++++. +.+--++++|-+++..++..|.+.+-++ +..||.|||.+||+...---
T Consensus 516 L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~t 572 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPT 572 (727)
T ss_pred HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHH
Confidence 6777763 5777899999999999999999998886 68999999999999765433
No 58
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=2.4e+02 Score=33.81 Aligned_cols=114 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHH
Q 035696 166 LKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDE 245 (405)
Q Consensus 166 L~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDe 245 (405)
.+-|.|.+|+.++..|+|..-++.+.=..--.|. +-.++.-..+.-+.|+.|+.|+..-..-..|=
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~--------------ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLL--------------DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH--------------HHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHhcCchHHHHHhhccCcchhhHhhhhhhhhhh------hcc------cHHHHHHHHHhHHH
Q 035696 246 IESNGEIPKIISLLDMKDLQMKLLAMDCILEIG------YFG------RKEAIDAMLEQGLV 295 (405)
Q Consensus 246 i~~~GeIpkiislLdskdl~~r~~amdCileIg------y~G------rKe~IEaML~~glV 295 (405)
|.++ ||.+|=++.--|-+.|.-|.+|+..|+ .+| .-++.=-|+.+|++
T Consensus 736 i~k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 736 IPKL--IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHH--HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
No 59
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=28.78 E-value=3e+02 Score=25.70 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred hhHHHHhhhhhhhhhhhhhhhHHHHHH-----HHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHH
Q 035696 89 LRSFLARRVSTHSISRVAGSIETEIQA-----WIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQD 163 (405)
Q Consensus 89 l~sfl~R~~~~~~isrva~~ie~eiqa-----wiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQd 163 (405)
..+|+ +-+.....-+||.++-.+.+. |=|--.++.|+..++. -..++-++|++|+. .+++|+-=-
T Consensus 55 ~~a~~-g~vd~~~L~~va~~~~~~lkrl~~s~~kg~~ll~EL~~~r~~------~~~~lk~~lk~fq~---~a~cp~~Cg 124 (160)
T PF15005_consen 55 EDAFM-GVVDEDTLDKVAWSFKNQLKRLTDSDLKGEPLLKELVWMRQN------QKKELKKALKQFQK---KACCPNKCG 124 (160)
T ss_pred hhhhh-hhccHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH------HHHHHHHHHHHHHH---HhcCchhcc
Confidence 33444 556677788888888888774 6667778888888875 36788889999987 688887654
Q ss_pred HHH
Q 035696 164 LVL 166 (405)
Q Consensus 164 liL 166 (405)
+.+
T Consensus 125 ~~~ 127 (160)
T PF15005_consen 125 LML 127 (160)
T ss_pred ccc
Confidence 443
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=28.35 E-value=2.2e+02 Score=32.14 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHhCCCCCcchhhhhHHHHHHHHhhcCCcee
Q 035696 174 LETILCNPSCSKSLREQSAYSIASLIRFNKDVFV 207 (405)
Q Consensus 174 Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfV 207 (405)
+...|.|+ +--||.-+|+++.+|-+.+.+.+.
T Consensus 145 lkk~L~D~--~pYVRKtAalai~Kly~~~pelv~ 176 (746)
T PTZ00429 145 LRRAVADP--DPYVRKTAAMGLGKLFHDDMQLFY 176 (746)
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhhCccccc
Confidence 44445454 567999999999999998887653
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.02 E-value=79 Score=26.54 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=39.8
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
-||-++..++.+|.++|..|-+++..|.-..+.+.+.. =..+..-|..+-
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~ 77 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 36889999999999999999999999998888777663 245555555554
No 62
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=27.32 E-value=1.2e+02 Score=34.44 Aligned_cols=69 Identities=16% Similarity=0.305 Sum_probs=52.0
Q ss_pred cccccHHHHHHhccc------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhh
Q 035696 211 LMGPTVQALLTMSST------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGY 279 (405)
Q Consensus 211 Lmg~~V~aLI~m~s~------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy 279 (405)
-+.|+.++-|.|-+- +-..+..|.+-.=..-.--++-+.|.|||+|.+|++....++.-|-.|.=-+.|
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 588899999999876 333444555544333344488899999999999999999999999888755544
No 63
>smart00319 TarH Homologues of the ligand binding domain of Tar. Homologues of the ligand binding domain of the wild-type bacterial aspartate receptor, Tar.
Probab=27.11 E-value=1.9e+02 Score=23.30 Aligned_cols=84 Identities=14% Similarity=0.292 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHH
Q 035696 68 QHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLT 147 (405)
Q Consensus 68 ~~L~~LktL~~~l~~~~g~~~l~sfl~R~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~ 147 (405)
.++.+.+..+.. +.- .++.|...+..+..=.+++..|..-.+++++ .+..++..+.. ++.++.+..-.
T Consensus 42 ~~~~~a~~~l~~---a~~--~~~~f~~~p~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~l~~-----~~~~~~~~~~~ 109 (135)
T smart00319 42 KLMTAASESLKQ---AEK--NYKSYENMTALPRADRALDAELKEKFQQYIT--ALQELIQILGN-----GNLGAFFDQPT 109 (135)
T ss_pred HHHHHHHHHHHH---HHH--HHHHHHcCcCCCcccHHHHHHHHHHHHHHHH--HHHHHHHHHhc-----CCcchHHhCch
Confidence 566666655554 554 4889988876655545778888888999988 78889999885 44445554432
Q ss_pred HHHHHHhccCChHHHHHHH
Q 035696 148 QFEDRVSQGFSRELQDLVL 166 (405)
Q Consensus 148 efe~rvsqgfD~~lQdliL 166 (405)
+ .+..+||+..++..-
T Consensus 110 ~---~~~~~~~~~~~~w~~ 125 (135)
T smart00319 110 Q---GMQDGFDPAYRDWLQ 125 (135)
T ss_pred h---hchhhhcHHHHHHHH
Confidence 2 123788888877654
No 64
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.00 E-value=1.4e+02 Score=33.32 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=66.7
Q ss_pred ccHHHHHHhcccchHHHHHHHHHh-hcChh----HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHH
Q 035696 214 PTVQALLTMSSTHSSKVLCELIKS-IKSPL----VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDA 288 (405)
Q Consensus 214 ~~V~aLI~m~s~~s~~vL~~Li~~-i~spL----vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEa 288 (405)
++|+-||+...-+....|.-.+.. .+=.. -++++++|.|+|++.++-..+..++.+++-.++-+.+=|.- --.
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~gl--r~K 381 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGL--RPK 381 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccc--cHH
Confidence 355556655554444443333322 22222 46799999999999999999999999999999999987642 347
Q ss_pred HHHhHHHHHHHHHhhhcc
Q 035696 289 MLEQGLVKKLVELQRSEL 306 (405)
Q Consensus 289 ML~~glVeKLv~LqRse~ 306 (405)
|..-|++-+|+.|=-++.
T Consensus 382 Mv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HhhccchHHHHHHhCCcc
Confidence 999999999999986654
No 65
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=26.98 E-value=1.4e+02 Score=21.52 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=46.4
Q ss_pred ccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhh-hhhhcc
Q 035696 214 PTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCIL-EIGYFG 281 (405)
Q Consensus 214 ~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCil-eIgy~G 281 (405)
+.+..+-....+ +...|+.++....+.-..+....--+.+++..|...++.+..+|-+|=+ +-.+|-
T Consensus 2 ~~~~~la~~~~~-s~~~l~~~f~~~~~~s~~~~~~~~r~~~a~~~l~~~~~~~~~ia~~~g~~s~~~f~ 69 (84)
T smart00342 2 LTLEDLAEALGM-SPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFS 69 (84)
T ss_pred CCHHHHHHHhCC-CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCChHHHH
Confidence 345566555555 5777777777665444455555556889999999888999999888766 555553
No 66
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=26.75 E-value=1.9e+02 Score=34.63 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCC
Q 035696 125 LTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKD 204 (405)
Q Consensus 125 Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkd 204 (405)
-++.||- .++.-.|.++|.-||.--+.++- .+|...|-|..|==+||=++||++++-+ -+..
T Consensus 647 w~~QLr~----drDVvAQ~EAI~~le~~p~~~s~-------------~~L~rtl~der~FyrIR~~Aa~aLak~a-~~~~ 708 (1180)
T KOG1932|consen 647 WVYQLRQ----DRDVVAQMEAIESLEALPSTASR-------------SALTRTLEDERYFYRIRIAAAFALAKTA-NGES 708 (1180)
T ss_pred HHHHHHh----cccHHHHHHHHHHHHcCCcchhH-------------HHHHHHHhhcchhhHHHHHHHHHHHHhh-cccc
Confidence 3788864 38888888998888884433221 6788888899999999999999999987 2223
Q ss_pred ceeeeecccccHHHHHHhcc---c-chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhh
Q 035696 205 VFVGQVLMGPTVQALLTMSS---T-HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEI 277 (405)
Q Consensus 205 vfVg~vLmg~~V~aLI~m~s---~-~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileI 277 (405)
-|.|. ++||.|-. | .+.+ +++.+-=.-+++-+-.-.||.-+..|....-+.--..+.++|||
T Consensus 709 dwtG~-------~~Li~~F~~~fc~k~st----IpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~cp~~V~~FlLdL 774 (1180)
T KOG1932|consen 709 DWTGP-------PHLIQFFRKKFCSKDST----IPKSNNFSNFQEYFVQCAIPVAFASLRGREGKCPKEVKAFLLDL 774 (1180)
T ss_pred cccCh-------HHHHHHHHHHhccccCC----CCCcCccccHHHHHHHHhhHHHHHHhccccCCChHHHHHHHHHH
Confidence 44442 45554421 2 1100 11111111122222222366666666665555555566666666
No 67
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=26.04 E-value=73 Score=22.42 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.2
Q ss_pred hhccCccHHHHHHHHHHHHHHHHH
Q 035696 361 EVGEGLRQREKRALKQEILLRVRE 384 (405)
Q Consensus 361 evgegL~~~EkR~~K~eILrrVRe 384 (405)
--=+.|++..|+.+|.+|+.-+.+
T Consensus 13 p~~k~L~~~~k~~~k~~i~~ll~e 36 (37)
T PF02944_consen 13 PHMKRLPPKQKLKFKMKILQLLFE 36 (37)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 334679999999999999998876
No 68
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.56 E-value=54 Score=29.39 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=28.6
Q ss_pred HHHHhhccCcchhhHhhhhhhhhhhh---cccHHHHHHHHHhH
Q 035696 254 KIISLLDMKDLQMKLLAMDCILEIGY---FGRKEAIDAMLEQG 293 (405)
Q Consensus 254 kiislLdskdl~~r~~amdCileIgy---~GrKe~IEaML~~g 293 (405)
.+..+|..+|.+++-+|++|++--.. .=-|+-++.++.+.
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCcc
Confidence 46689999999999999999986322 11255666665544
No 69
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.17 E-value=4.1e+02 Score=22.29 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=51.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHH--hhchHHHHHHH
Q 035696 100 HSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVL--KSKVFSLLETI 177 (405)
Q Consensus 100 ~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL--~sklf~~Le~~ 177 (405)
-.++.+|-++...|..+++ +.+.-+.+.+.|+ +..=..-+..-|-+ +.+.+ ++.+| -..+|+.|-.+
T Consensus 8 i~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-----d~rVRy~AcEaL~n-i~k~~----~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-----DSRVRYYACEALYN-ISKVA----RGEILPYFNEIFDALCKL 76 (97)
T ss_pred HHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-----cHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4677888888888888776 3566666666662 22222223334444 33333 33333 46899999999
Q ss_pred HhCCCCCcchhhhhHHH
Q 035696 178 LCNPSCSKSLREQSAYS 194 (405)
Q Consensus 178 L~~~~~s~~VRe~sAf~ 194 (405)
++|+. .+||..+.++
T Consensus 77 ~~D~d--~~Vr~~a~~L 91 (97)
T PF12755_consen 77 SADPD--ENVRSAAELL 91 (97)
T ss_pred HcCCc--hhHHHHHHHH
Confidence 99994 4588877543
No 70
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=24.76 E-value=1.3e+02 Score=25.99 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=44.4
Q ss_pred hhHHHHhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHH
Q 035696 89 LRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFED 151 (405)
Q Consensus 89 l~sfl~R~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~ 151 (405)
|-..|.|++|-..|.+||..+-.+=..=+|+..|...+..+-++ .-+++++-++-..|+.
T Consensus 28 LlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~---~P~~~di~RV~~~Laa 87 (96)
T PF11829_consen 28 LLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDE---LPTPEDIERVRARLAA 87 (96)
T ss_dssp HHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS----S-HHHHHHHHHHHHT
T ss_pred HHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC---CcCHHHHHHHHHHHHh
Confidence 88999999999999999998865433334889999999998874 6667777776666654
No 71
>PHA02795 ankyrin-like protein; Provisional
Probab=24.13 E-value=1.9e+02 Score=30.69 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=60.1
Q ss_pred ecccccHHHHHHhcccchHHHHHHHHHhhcChh----HHHHHhcCchHHHHHhhccCcchhh------------Hhhhhh
Q 035696 210 VLMGPTVQALLTMSSTHSSKVLCELIKSIKSPL----VDEIESNGEIPKIISLLDMKDLQMK------------LLAMDC 273 (405)
Q Consensus 210 vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spL----vDei~~~GeIpkiislLdskdl~~r------------~~amdC 273 (405)
|....+....+----|-+..||-....+.|-+. +|.+....-=--|+.||-|+.-..- .-+++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~ 122 (437)
T PHA02795 43 VVDRKIFDRFLLEPICDPVDVLYDYFRIHRDNIDQYIVDRLFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLY 122 (437)
T ss_pred hhhHHHHHHHhhhccCCHHHHHHHHHHHcCcchhhhhhhhHHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHH
Confidence 333334444444455889999999988887776 5555554555557777777755433 678999
Q ss_pred hhhhhhcccHHHHHHHHHhHH
Q 035696 274 ILEIGYFGRKEAIDAMLEQGL 294 (405)
Q Consensus 274 ileIgy~GrKe~IEaML~~gl 294 (405)
.+.-++ |.+|+++.|+..|-
T Consensus 123 ~~~n~~-n~~eiV~~LI~~GA 142 (437)
T PHA02795 123 YLSNAY-VEIDIVDFMVDHGA 142 (437)
T ss_pred HHHhcC-CCHHHHHHHHHCCC
Confidence 998777 99999999999987
No 72
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=24.12 E-value=42 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHhHHH
Q 035696 104 RVAGSIETEIQAWIDREH 121 (405)
Q Consensus 104 rva~~ie~eiqawiDre~ 121 (405)
|..+-+++||.+||++-.
T Consensus 48 r~v~W~~SEI~~Wi~~~~ 65 (70)
T COG3311 48 RSVAWPESEIDEWIASRK 65 (70)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 777889999999998743
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.63 E-value=5.5e+02 Score=28.17 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChH
Q 035696 96 RVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRE 160 (405)
Q Consensus 96 ~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~ 160 (405)
.+|...+..+.+. .|.+.|.+++.++.+ ++....++.+.++. ..|.|+.
T Consensus 231 ~It~~~v~~llg~--------~~~~~i~~lv~al~~-----~d~~~al~~l~~l~---~~g~d~~ 279 (584)
T PRK14952 231 HVTYQRALGLLGA--------TDVALIDDAVDALAA-----DDAAALFGAIESVI---DAGHDPR 279 (584)
T ss_pred CcCHHHHHHHHCC--------CCHHHHHHHHHHHHc-----CCHHHHHHHHHHHH---HcCCCHH
Confidence 3454555555544 467888899999986 67777887776664 3666654
No 74
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.70 E-value=1.8e+02 Score=29.80 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=64.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHH--Hhhch-HHH
Q 035696 97 VSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLV--LKSKV-FSL 173 (405)
Q Consensus 97 ~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdli--L~skl-f~~ 173 (405)
....+|-+++..+-.+=+--++|. +-.-.||+ -|+|+++.....-|..- |.-|-.++-=.+ |+||- .+-
T Consensus 151 ~~~ssv~~lr~~lld~t~~l~~Ry---~amF~LRn----~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl~s~~ai~~ 222 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDETKPLFERY---RAMFYLRN----IGTEEAINALIDGLADD-SALFRHEVAFVFGQLQSPAAIPS 222 (289)
T ss_pred cccccHHHHHHHHHhcchhHHHHH---hhhhHhhc----cCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhccchhhhHH
Confidence 445677777778888888888887 55667886 47887777766555542 443433332222 23332 466
Q ss_pred HHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 174 LETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 174 Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
|...|.|.++.--||-+||+|+.+.+
T Consensus 223 L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 223 LIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 78888888888899999999998754
No 75
>PF13606 Ank_3: Ankyrin repeat
Probab=21.65 E-value=63 Score=21.49 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.8
Q ss_pred hhcccHHHHHHHHHhH
Q 035696 278 GYFGRKEAIDAMLEQG 293 (405)
Q Consensus 278 gy~GrKe~IEaML~~g 293 (405)
++.|+.|+|+.|++.|
T Consensus 10 ~~~g~~e~v~~Ll~~g 25 (30)
T PF13606_consen 10 ASNGNIEIVKYLLEHG 25 (30)
T ss_pred HHhCCHHHHHHHHHcC
Confidence 5779999999999876
No 76
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=3.7e+02 Score=30.25 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=39.2
Q ss_pred cccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcc
Q 035696 213 GPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDL 264 (405)
Q Consensus 213 g~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl 264 (405)
..||..|+.|-.| .-+..|-.+ +.-|-|...+...|.+|++++||++..-
T Consensus 344 ~~iveKL~klfp~~h~dL~~~tl~LlfNl--SFD~glr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQHPDLRKATLMLLFNL--SFDSGLRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHhhhc--cccccccHHHhhccchHHHHHHhCCccc
Confidence 4799999999999 233333333 3478889999999999999999998744
No 77
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=21.41 E-value=1.3e+02 Score=25.26 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=27.7
Q ss_pred HHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChH
Q 035696 114 QAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRE 160 (405)
Q Consensus 114 qawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~ 160 (405)
=--+|++.+.+|+..+-+ +|-.+.++.+.++.. +|.|+.
T Consensus 10 lG~v~~~~i~~l~~ai~~-----~d~~~~l~~~~~l~~---~G~d~~ 48 (143)
T PF12169_consen 10 LGLVDEEQIFELLDAILE-----GDAAEALELLNELLE---QGKDPK 48 (143)
T ss_dssp HTHTSTHHHHHHHHHHHT-----T-HHHHHHHHHHHHH---CT--HH
T ss_pred HCCCCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH---hCCCHH
Confidence 345799999999999996 677677666666654 999986
No 78
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E. coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i
Probab=21.26 E-value=2.8e+02 Score=21.60 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHH
Q 035696 69 HLADLKTLVQTLHKSRGRNSLRSF 92 (405)
Q Consensus 69 ~L~~LktL~~~l~~~~g~~~l~sf 92 (405)
-...+..++++|+.+.++-|+..+
T Consensus 31 d~~~l~~~~H~LkGsa~~~G~~~l 54 (94)
T cd00088 31 DLNEIFRAAHTLKGSAASLGLQRL 54 (94)
T ss_pred HHHHHHHHHHhhhhHHhcCChHHH
Confidence 345566666776666665444443
No 79
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=20.77 E-value=49 Score=30.96 Aligned_cols=126 Identities=23% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHhccC------ChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeec-c
Q 035696 141 ELVKLLTQF-EDRVSQGF------SRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVL-M 212 (405)
Q Consensus 141 e~v~~L~ef-e~rvsqgf------D~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vL-m 212 (405)
..+++|.+. ++|.--|| |. ++--+..-.+++-.+++|| +.+||-.++-++++|. .|--+|..+.= .
T Consensus 8 ~~L~al~k~~~~r~l~~yW~~llP~~---~~~~~~~~~sLlt~il~Dp--~~kvR~aA~~~l~~lL-~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 8 QCLQALAKSTDKRSLFGYWPALLPDS---VLQGRPATPSLLTCILKDP--SPKVRAAAASALAALL-EGSKPFLAQAEES 81 (182)
T ss_pred HHHHHHHHhcCCceeHhhHHHHCCCC---CCcCCCCCcchhHHHHcCC--chhHHHHHHHHHHHHH-HccHHHHHHHHhc
Q ss_pred cccHHHHHHhccc--------------------------chHHHHHHHHHhhcChh--HHHHHhcCchHHHHHhhccCcc
Q 035696 213 GPTVQALLTMSST--------------------------HSSKVLCELIKSIKSPL--VDEIESNGEIPKIISLLDMKDL 264 (405)
Q Consensus 213 g~~V~aLI~m~s~--------------------------~s~~vL~~Li~~i~spL--vDei~~~GeIpkiislLdskdl 264 (405)
..-..+-.++++- .-+++|..||- .+|. ++.=+-.-.|..+-.++..+|.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~--~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQ--ATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHc--cCChhhcCHhHHHHHHHHHHHHHhcCCC
Q ss_pred hhhHhhhhhh
Q 035696 265 QMKLLAMDCI 274 (405)
Q Consensus 265 ~~r~~amdCi 274 (405)
..++.++-|+
T Consensus 160 ~v~v~~l~~~ 169 (182)
T PF13251_consen 160 NVRVAALSCL 169 (182)
T ss_pred cHHHHHHHHH
No 80
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=20.20 E-value=1.1e+02 Score=25.22 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 173 LLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 173 ~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
.|-.+-.|+.=...|||++|||-+.|.
T Consensus 33 ~Ln~iAad~~Lp~~vRE~AAfAAANLl 59 (66)
T PF06786_consen 33 TLNDIAADEALPEDVREQAAFAAANLL 59 (66)
T ss_pred HHHHHHcccccCHHHHHHHHHHHHHHH
Confidence 345555677778899999999999886
No 81
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=20.12 E-value=5.3e+02 Score=21.64 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHchhccccccccCC-CCchhHHHHHHHHHHHHHHHhhcCCCCchhHHH
Q 035696 15 NVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSED-PHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFL 93 (405)
Q Consensus 15 ~vLeaLk~As~~lq~~~~~~~~~~~~~ai~ALleLe~e~~~ils~d-P~ls~Ls~~L~~LktL~~~l~~~~g~~~l~sfl 93 (405)
..++.++.-.++++.+. |.+..+... +..|+... +....+...+..|.+.-+.|...... -...|
T Consensus 37 ~~l~~~~~~~~e~~~~~---------~~~~~l~~~---~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~--r~~~L 102 (213)
T cd00176 37 ALLKKHEALEAELAAHE---------ERVEALNEL---GEQLIEEGHPDAEEIQERLEELNQRWEELRELAEE--RRQRL 102 (213)
T ss_pred HHHHHHHHHHHHHHHCH---------HHHHHHHHH---HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 45555555555555332 555555544 33455554 46778888888888887777666552 45555
Q ss_pred HhhhhhhhhhhhhhhhHHHHHHHHhHHH
Q 035696 94 ARRVSTHSISRVAGSIETEIQAWIDREH 121 (405)
Q Consensus 94 ~R~~~~~~isrva~~ie~eiqawiDre~ 121 (405)
......+.-++-+.. +..|++...
T Consensus 103 ~~~~~~~~~~~~~~~----l~~wl~~~e 126 (213)
T cd00176 103 EEALDLQQFFRDADD----LEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 555444443332221 899997543
Done!