Query 035696
Match_columns 405
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 08:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 99.1 5.8E-09 2E-13 86.9 16.5 197 96-305 20-224 (252)
2 4db8_A Armadillo-repeat protei 99.0 2.7E-08 9.4E-13 84.2 18.2 182 111-305 45-234 (252)
3 4db6_A Armadillo repeat protei 98.9 6.1E-08 2.1E-12 80.1 14.5 170 122-304 14-191 (210)
4 4b8j_A Importin subunit alpha- 98.8 8.6E-08 2.9E-12 90.7 16.2 198 100-306 266-480 (528)
5 4db8_A Armadillo-repeat protei 98.8 4.2E-08 1.4E-12 83.1 12.2 171 121-304 13-191 (252)
6 4hxt_A De novo protein OR329; 98.7 1.9E-07 6.4E-12 77.8 13.5 171 121-304 3-181 (252)
7 2jdq_A Importin alpha-1 subuni 98.6 6.3E-06 2.2E-10 74.6 21.4 197 97-304 84-287 (450)
8 2jdq_A Importin alpha-1 subuni 98.6 7.7E-07 2.6E-11 80.6 15.2 195 101-305 215-426 (450)
9 1wa5_B Importin alpha subunit; 98.6 8.6E-07 2.9E-11 84.4 15.4 195 101-305 280-493 (530)
10 1wa5_B Importin alpha subunit; 98.6 2E-06 6.7E-11 82.0 17.7 194 99-305 152-353 (530)
11 3ul1_B Importin subunit alpha- 98.5 1.4E-06 4.9E-11 84.2 14.3 187 110-306 264-462 (510)
12 3tpo_A Importin subunit alpha- 98.5 1.5E-06 5.1E-11 84.0 14.4 186 110-306 283-481 (529)
13 1xqr_A HSPBP1 protein; armadil 98.5 1.5E-06 5E-11 81.2 13.7 178 120-305 28-221 (296)
14 4db6_A Armadillo repeat protei 98.5 3E-06 1E-10 70.0 13.6 155 112-278 46-208 (210)
15 4b8j_A Importin subunit alpha- 98.5 4.8E-06 1.6E-10 78.8 16.1 193 100-305 140-340 (528)
16 3tpo_A Importin subunit alpha- 98.3 3.4E-06 1.2E-10 81.5 12.5 175 119-305 250-432 (529)
17 3now_A UNC-45 protein, SD10334 98.3 1.4E-05 4.9E-10 84.9 16.1 195 95-303 553-760 (810)
18 1xqr_A HSPBP1 protein; armadil 98.2 2.7E-05 9.2E-10 72.7 15.5 153 119-283 80-242 (296)
19 3nmz_A APC variant protein; pr 98.1 7.8E-05 2.7E-09 73.9 17.3 198 99-305 221-433 (458)
20 1jdh_A Beta-catenin; beta-cate 98.1 7.2E-05 2.5E-09 69.4 15.7 183 111-305 299-513 (529)
21 3nmw_A APC variant protein; AR 98.1 5.4E-05 1.8E-09 72.1 15.1 202 95-305 101-317 (354)
22 3ul1_B Importin subunit alpha- 98.1 1.5E-05 5.1E-10 77.1 11.2 174 120-305 232-413 (510)
23 2z6h_A Catenin beta-1, beta-ca 98.0 7.1E-05 2.4E-09 73.8 14.1 182 113-306 298-511 (644)
24 2z6g_A B-catenin; FULL-length, 98.0 0.00016 5.5E-09 74.4 16.7 194 99-305 420-646 (780)
25 3nmw_A APC variant protein; AR 97.9 3.8E-05 1.3E-09 73.2 9.1 165 138-307 45-228 (354)
26 1jdh_A Beta-catenin; beta-cate 97.9 0.00046 1.6E-08 64.0 15.9 175 116-305 181-367 (529)
27 2z6h_A Catenin beta-1, beta-ca 97.8 0.00029 1E-08 69.4 14.5 175 118-305 12-194 (644)
28 1xm9_A Plakophilin 1; armadill 97.8 0.00013 4.4E-09 70.0 11.3 169 121-304 3-196 (457)
29 3nmz_A APC variant protein; pr 97.8 0.00011 3.8E-09 72.8 11.1 150 156-307 176-344 (458)
30 1xm9_A Plakophilin 1; armadill 97.6 0.00022 7.6E-09 68.4 9.8 150 115-278 39-219 (457)
31 3now_A UNC-45 protein, SD10334 97.5 0.00082 2.8E-08 71.7 13.8 180 113-305 488-677 (810)
32 2z6g_A B-catenin; FULL-length, 97.3 0.003 1E-07 65.0 14.2 177 116-305 146-330 (780)
33 3grl_A General vesicular trans 97.2 0.018 6.1E-07 60.8 18.3 183 111-305 107-323 (651)
34 3l6x_A Catenin delta-1; cateni 96.9 0.0073 2.5E-07 62.2 12.5 171 120-305 48-247 (584)
35 3tt9_A Plakophilin-2; cell adh 96.9 0.0061 2.1E-07 55.8 10.4 171 121-305 9-206 (233)
36 4gmo_A Putative uncharacterize 96.2 0.0093 3.2E-07 60.7 8.0 159 122-293 36-227 (684)
37 3l6x_A Catenin delta-1; cateni 95.6 0.12 4.2E-06 53.2 13.2 163 118-294 306-489 (584)
38 3tt9_A Plakophilin-2; cell adh 95.5 0.054 1.9E-06 49.5 9.1 88 214-304 8-105 (233)
39 1qgr_A Protein (importin beta 95.4 0.23 7.8E-06 49.0 13.6 185 101-300 631-848 (876)
40 3ltm_A Alpha-REP4; protein eng 95.3 0.23 8E-06 41.1 11.6 125 117-278 16-140 (211)
41 2bpt_A Importin beta-1 subunit 95.0 0.59 2E-05 46.0 15.0 147 142-302 244-420 (861)
42 2qk2_A LP04448P; mini spindles 94.9 0.15 5.1E-06 43.9 9.5 151 121-290 57-216 (242)
43 2bpt_A Importin beta-1 subunit 94.4 0.62 2.1E-05 45.8 13.6 166 101-280 621-813 (861)
44 1b3u_A Protein (protein phosph 94.3 1.1 3.6E-05 41.9 14.3 104 169-282 441-552 (588)
45 1b3u_A Protein (protein phosph 94.2 1.3 4.4E-05 41.3 14.7 103 168-280 401-510 (588)
46 3ltj_A Alpharep-4; protein eng 94.2 1.2 4.1E-05 36.5 12.9 122 119-277 13-134 (201)
47 2qk2_A LP04448P; mini spindles 93.9 0.31 1.1E-05 41.9 9.3 150 137-302 27-185 (242)
48 4fdd_A Transportin-1; heat rep 93.8 0.44 1.5E-05 48.2 11.6 188 100-300 550-761 (852)
49 3ltj_A Alpharep-4; protein eng 93.6 2.1 7.3E-05 35.0 13.4 132 119-290 44-175 (201)
50 3opb_A SWI5-dependent HO expre 93.5 1.5 5.1E-05 47.3 15.5 181 114-305 451-666 (778)
51 3ltm_A Alpha-REP4; protein eng 92.7 1.7 5.9E-05 35.9 11.6 130 119-288 49-178 (211)
52 1ibr_B P95, importin beta-1 su 92.6 1.3 4.6E-05 39.8 11.6 125 169-301 259-416 (462)
53 1oyz_A Hypothetical protein YI 92.5 4.7 0.00016 34.7 15.1 143 118-288 52-196 (280)
54 2qk1_A Protein STU2; STU2P, XM 92.3 1.6 5.6E-05 39.0 11.8 159 120-291 60-232 (249)
55 4fdd_A Transportin-1; heat rep 91.6 0.59 2E-05 47.3 9.0 145 121-278 360-511 (852)
56 1qgr_A Protein (importin beta 91.4 9 0.00031 37.8 16.8 125 169-301 259-416 (876)
57 3opb_A SWI5-dependent HO expre 91.3 1.5 5.2E-05 47.2 12.1 201 96-305 519-759 (778)
58 1u6g_C TIP120 protein, CAND1; 88.3 5.4 0.00018 42.2 13.2 108 168-282 474-601 (1230)
59 1u6g_C TIP120 protein, CAND1; 88.2 2.6 9E-05 44.5 10.8 172 95-282 103-287 (1230)
60 3grl_A General vesicular trans 86.0 8 0.00027 41.1 12.9 94 213-307 121-222 (651)
61 1ibr_B P95, importin beta-1 su 85.0 3 0.0001 37.6 8.0 155 119-279 127-288 (462)
62 1oyz_A Hypothetical protein YI 82.5 4.7 0.00016 34.7 8.0 129 118-279 21-157 (280)
63 2db0_A 253AA long hypothetical 77.3 29 0.001 33.1 12.0 101 186-302 122-227 (253)
64 2qk1_A Protein STU2; STU2P, XM 75.2 16 0.00055 32.6 9.3 155 137-302 28-200 (249)
65 1te4_A Conserved protein MTH18 74.4 2.5 8.4E-05 33.2 3.4 96 171-289 14-109 (131)
66 2vgl_B AP-2 complex subunit be 73.2 14 0.00049 36.4 9.3 128 168-302 159-292 (591)
67 2vgl_B AP-2 complex subunit be 70.8 31 0.0011 34.0 11.1 150 120-302 13-169 (591)
68 4ffb_C Protein STU2; tubulin f 67.8 18 0.00061 31.9 7.8 100 173-281 107-215 (278)
69 2of3_A ZYG-9; multifunctional 63.5 99 0.0034 29.0 12.6 93 170-278 133-235 (266)
70 1te4_A Conserved protein MTH18 58.7 8.6 0.00029 30.1 3.6 87 171-276 44-130 (131)
71 4gmo_A Putative uncharacterize 57.0 29 0.00098 35.4 8.0 76 226-304 53-130 (684)
72 2x1g_F Cadmus; transport prote 50.0 1.2E+02 0.004 31.3 11.2 70 168-240 690-764 (971)
73 4ffb_C Protein STU2; tubulin f 42.6 1.5E+02 0.005 26.0 9.4 104 171-283 57-173 (278)
74 4gpm_A Engineered protein OR26 42.5 64 0.0022 26.5 6.7 15 279-293 145-159 (169)
75 3ol3_A Putative uncharacterize 41.6 46 0.0016 28.2 5.6 74 73-151 13-97 (107)
76 1use_A VAsp, vasodilator-stimu 35.3 29 0.001 25.6 3.0 26 365-390 3-28 (45)
77 3ogh_B Protein YCIE; iron-bind 29.0 1.2E+02 0.0041 27.0 6.5 108 123-240 8-126 (171)
78 2obp_A Putative DNA-binding pr 28.7 80 0.0027 25.6 4.9 47 11-75 16-62 (96)
79 1vsy_5 Proteasome activator BL 27.6 2.5E+02 0.0085 30.8 9.9 127 67-202 728-875 (997)
80 3hiu_A Uncharacterized protein 25.3 1.1E+02 0.0038 27.0 5.6 107 124-240 6-123 (166)
81 3kyj_A CHEA3, putative histidi 23.8 2.1E+02 0.0071 24.2 6.8 40 67-116 41-80 (144)
82 2vgl_A Adaptor protein complex 23.2 4.8E+02 0.016 26.2 10.4 100 169-278 146-269 (621)
83 3ghg_A Fibrinogen alpha chain; 22.8 85 0.0029 33.1 4.9 85 64-153 60-154 (562)
84 3h0d_A CTSR; protein DNA compl 21.5 23 0.00079 31.7 0.4 37 284-320 5-53 (155)
85 3f6q_A Integrin-linked protein 20.9 1.9E+02 0.0066 22.7 5.7 57 227-293 72-128 (179)
86 1w63_A Adapter-related protein 20.4 4.3E+02 0.015 26.3 9.3 151 104-278 20-170 (618)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.08 E-value=5.8e-09 Score=86.86 Aligned_cols=197 Identities=17% Similarity=0.280 Sum_probs=152.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHH
Q 035696 96 RVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLE 175 (405)
Q Consensus 96 ~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le 175 (405)
......+..++..-..-.+..++...|..|+..|++ .+.+-+..++.-+-+ + ...+++.++.+.+.+.++.|-
T Consensus 20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~-l-~~~~~~~~~~~~~~~~i~~l~ 92 (252)
T 4hxt_A 20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALAN-I-ASGPDEAIKAIVDAGGVEVLV 92 (252)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHH-H-TTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHH-H-HcCChHHHHHHHHCCCHHHHH
Confidence 334455555555555556667777889999999997 345455555555555 4 234699999999999999999
Q ss_pred HHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHH
Q 035696 176 TILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIE 247 (405)
Q Consensus 176 ~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~ 247 (405)
.+|.++ +..+|..++.++..|.. +.+.....+.....++.|+.+... .+..+|+.|.. ..|- .+.+.
T Consensus 93 ~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~ 167 (252)
T 4hxt_A 93 KLLTST--DSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIV 167 (252)
T ss_dssp HHTTCS--SHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHH
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 999754 57899999999999985 334455566677889999998876 45555665544 2444 57888
Q ss_pred hcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 248 SNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 248 ~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
..|-||.++.+|.+.+..+|..++.|+..++. +..+..+.+.+.|+++.|+.+=+++
T Consensus 168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 224 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTST 224 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCC
Confidence 99999999999999999999999999999997 7899999999999999999988543
No 2
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.02 E-value=2.7e-08 Score=84.20 Aligned_cols=182 Identities=20% Similarity=0.301 Sum_probs=141.7
Q ss_pred HHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhh
Q 035696 111 TEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQ 190 (405)
Q Consensus 111 ~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~ 190 (405)
..++..++...|..|+..|++ .+.+-+..++.-+-+ +. ..+++.++.+...+.++.|-.+|.++ +..||+.
T Consensus 45 ~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~-l~-~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~ 115 (252)
T 4db8_A 45 EQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSN-IA-SGGNEQIQAVIDAGALPALVQLLSSP--NEQILQE 115 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHH-HT-TSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHH
T ss_pred chHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hh-cCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHH
Confidence 345567777889999999997 334445555555555 43 23788899999999999999999775 5689999
Q ss_pred hHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccC
Q 035696 191 SAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMK 262 (405)
Q Consensus 191 sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdsk 262 (405)
+++++..|.. +.+..+..+.....++.|+.+... .+..+|..|.. .+|- .+.+...|-||.++.+|.++
T Consensus 116 a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~ 192 (252)
T 4db8_A 116 ALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSP 192 (252)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHhhc-CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHCCCHHHHHHHHCCC
Confidence 9999999974 444444667778899999999877 34445555443 2333 67778899999999999999
Q ss_pred cchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 263 DLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 263 dl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
|..++..|+.++..++ .+..+....+.+.|.++.|+.+-++.
T Consensus 193 ~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 193 NEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp SHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred CHHHHHHHHHHHHHHh-cCCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 9999999999999998 46788899999999999999988543
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.86 E-value=6.1e-08 Score=80.15 Aligned_cols=170 Identities=17% Similarity=0.286 Sum_probs=134.6
Q ss_pred HHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhh
Q 035696 122 IERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRF 201 (405)
Q Consensus 122 i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrf 201 (405)
..-|+..|++ .+.+-+..++.-+-+ +. ..+++.++.+...+.++.|-.+|.++ +..+|++++.++..|+.
T Consensus 14 ~~~l~~LL~s-----~~~~v~~~a~~~L~~-l~-~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~- 83 (210)
T 4db6_A 14 LPQMVQQLNS-----PDQQELQSALRKLSQ-IA-SGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 83 (210)
T ss_dssp HHHHHHHTTC-----SCHHHHHHHHHHHHH-HH-TSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHhcC-----CCHHHHHHHHHHHHH-HH-cCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhc-
Confidence 3456666664 566666677777766 43 34778889999999999999999765 56899999999999984
Q ss_pred cCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhh
Q 035696 202 NKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDC 273 (405)
Q Consensus 202 nkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdC 273 (405)
+.+.....+.....++.|+.+... .+..+|+.|.. ..|- .+.+...|-||.++.+|.+.|..++..|+.+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 444555666677899999999887 45556666654 3443 6788899999999999999999999999999
Q ss_pred hhhhhhcccHHHHHHHHHhHHHHHHHHHhhh
Q 035696 274 ILEIGYFGRKEAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 274 ileIgy~GrKe~IEaML~~glVeKLv~LqRs 304 (405)
+..++.. ..+....+.+.|.|+.|+.+-.+
T Consensus 162 L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~ 191 (210)
T 4db6_A 162 LSNIASG-GNEQKQAVKEAGALEKLEQLQSH 191 (210)
T ss_dssp HHHHHTS-CHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHcC-CcHHHHHHHHCCCHHHHHHHHhC
Confidence 9999974 46777899999999999999854
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.83 E-value=8.6e-08 Score=90.70 Aligned_cols=198 Identities=16% Similarity=0.227 Sum_probs=154.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh
Q 035696 100 HSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC 179 (405)
Q Consensus 100 ~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~ 179 (405)
..++.++..-...++..++...+..|+..|++ .+..-+..++.-+-+ +..+ ++...+.++..++++.|-.+|.
T Consensus 266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~a~~~L~n-l~~~-~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-----PSPSVLIPALRTVGN-IVTG-DDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-----SCHHHHHHHHHHHHH-HTTS-CHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-----CChhHHHHHHHHHHH-HHcC-CHHHHHHHHHhhhHHHHHHHHc
Confidence 34555555556677888888899999999997 344444555555544 5443 5566777888999999999996
Q ss_pred CCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCch
Q 035696 180 NPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEI 252 (405)
Q Consensus 180 ~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeI 252 (405)
++ ++..||.+++++|..|+. +.+..+..++...+++.|+.+.+. .+..+|..+...........+...|-|
T Consensus 339 ~~-~~~~v~~~A~~~L~nl~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 339 QN-LKKSIKKEACWTISNITA-GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 416 (528)
T ss_dssp SC-CCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred CC-CcHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 44 256899999999999996 455566677788899999998876 677788888775323347888889999
Q ss_pred HHHHHhhccCcchhhHhhhhhhhhhhhcccH----------HHHHHHHHhHHHHHHHHHhhhcc
Q 035696 253 PKIISLLDMKDLQMKLLAMDCILEIGYFGRK----------EAIDAMLEQGLVKKLVELQRSEL 306 (405)
Q Consensus 253 pkiislLdskdl~~r~~amdCileIgy~GrK----------e~IEaML~~glVeKLv~LqRse~ 306 (405)
|.++.+|+.+|.+++..+++++..|...|.+ +..+.+.+.|.+++|..|+.++.
T Consensus 417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 480 (528)
T 4b8j_A 417 KPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN 480 (528)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999888766 35777888999999999986553
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.82 E-value=4.2e-08 Score=83.08 Aligned_cols=171 Identities=18% Similarity=0.339 Sum_probs=137.3
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.+..+++.|+. ++.+.+..++..+-..++. +++..+.+...++++.|-.+|.+++ ..+|.+++.++..|+.
T Consensus 13 ~~~~~~~~L~s-----~~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 13 ELPQMTQQLNS-----DDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIAS 83 (252)
T ss_dssp SHHHHHHHHHS-----SCSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhc
Confidence 36778888886 5666788888888776665 6677788899999999999997664 6899999999999984
Q ss_pred hcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhh
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMD 272 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amd 272 (405)
+.+.+...+.....++.|+.+... .+..+|.+|.. ..+- .+.+...|-||.++.+|.+.|..++..|+.
T Consensus 84 -~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 160 (252)
T 4db8_A 84 -GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160 (252)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred -CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 344455666777899999999877 34455555533 3444 488999999999999999999999999999
Q ss_pred hhhhhhhcccHHHHHHHHHhHHHHHHHHHhhh
Q 035696 273 CILEIGYFGRKEAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 273 CileIgy~GrKe~IEaML~~glVeKLv~LqRs 304 (405)
++..++. +..+..+.+...|+|..|+.+=++
T Consensus 161 ~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 161 ALSNIAS-GGNEQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp HHHHHTT-SCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHc-CChHHHHHHHHCCCHHHHHHHHCC
Confidence 9999985 457888899999999999998743
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.74 E-value=1.9e-07 Score=77.75 Aligned_cols=171 Identities=18% Similarity=0.303 Sum_probs=135.6
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.|..|+..|++ .+.+.+..++.-+-. +.. .+++.++.+.+.++++.|-.+|.++ +..+|.+++.++..|..
T Consensus 3 ~i~~L~~~L~~-----~~~~~~~~a~~~L~~-l~~-~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 3 DVEKLVKLLTS-----TDSETQKEAARDLAE-IAS-GPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHHTTC-----SCHHHHHHHHHHHHH-HHT-SCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hhc-CCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc
Confidence 46788999986 346667777777766 433 3457888899999999999999765 37899999999999984
Q ss_pred hcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhh
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMD 272 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amd 272 (405)
+.+.+...+.....++.|+.+... .+..+|..|.. ..|- .+.+...|-||.++.+|.+.+..++..++.
T Consensus 74 -~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~ 150 (252)
T 4hxt_A 74 -GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 150 (252)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred -CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 334555566677889999999877 44445555543 3444 778888999999999999999999999999
Q ss_pred hhhhhhhcccHHHHHHHHHhHHHHHHHHHhhh
Q 035696 273 CILEIGYFGRKEAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 273 CileIgy~GrKe~IEaML~~glVeKLv~LqRs 304 (405)
|+..++. +..+..+.|...|.+..|+.+=++
T Consensus 151 ~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 151 ALANIAS-GPDEAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp HHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHc-CCHHHHHHHHHCcCHHHHHHHHCC
Confidence 9999986 467788899999999999998743
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.64 E-value=6.3e-06 Score=74.58 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=144.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHH
Q 035696 97 VSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLET 176 (405)
Q Consensus 97 ~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~ 176 (405)
.....+..++..-....+.+++...+..|+..|++ .+.+-...++.-|-+ +. ..+++.++.++..++++.|-.
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~vr~~a~~~L~~-l~-~~~~~~~~~~~~~~~i~~L~~ 156 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-----EFEDVQEQAVWALGN-IA-GDSTMCRDYVLDCNILPPLLQ 156 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHH-HH-TTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hc-cCCHHHHHHHHHCCCHHHHHH
Confidence 33444555554434456778888899999999996 355555555665655 42 245789999999999999999
Q ss_pred HHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhc
Q 035696 177 ILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESN 249 (405)
Q Consensus 177 ~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~ 249 (405)
+|.++ .+..||..+++++..|.+.. ++.....+..++++.|+.+... .+..+|..|... ..+..+.+...
T Consensus 157 ~l~~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~ 233 (450)
T 2jdq_A 157 LFSKQ-NRLTMTRNAVWALSNLCRGK-SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PNDKIQAVIDA 233 (450)
T ss_dssp HTTSC-CCHHHHHHHHHHHHHHHCCS-SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HhcCC-CCHHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-CcHHHHHHHHc
Confidence 98632 35689999999999999543 3444455568899999999875 233444444321 12346777888
Q ss_pred CchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhh
Q 035696 250 GEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 250 GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRs 304 (405)
|-+|.++.+|..+|..++..|+.++-.++. |..+..+.++..|++..|+.+=.+
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcC
Confidence 999999999999999999999999998876 556677788889999999998654
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.63 E-value=7.7e-07 Score=80.56 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=141.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhC
Q 035696 101 SISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCN 180 (405)
Q Consensus 101 ~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~ 180 (405)
.+..++..-..-++..++...+..|+..|++ .+.+-...++.-+-+ +..+ ++...+.++..++++.|-.+|.+
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~-l~~~-~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-----NDYKVVSPALRAVGN-IVTG-DDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-----SCHHHHHHHHHHHHH-HTTS-CHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-----CchhHHHHHHHHHHH-HhhC-ChHHHHHHHHCccHHHHHHHHcC
Confidence 3444444333445566666788999999986 344344444444444 5444 44556667888999999999976
Q ss_pred CCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchH
Q 035696 181 PSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIP 253 (405)
Q Consensus 181 ~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIp 253 (405)
+ +..||..+++++..|+. +.+..+..++...+++.|+.+... .+..+|+++........+..+...|-||
T Consensus 288 ~--~~~vr~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 288 P--KESIKKEACWTISNITA-GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp S--SHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred C--CHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 5 57899999999999985 333444455566788888887765 4666777777643223477888899999
Q ss_pred HHHHhhccCcchhhHhhhhhhhhhhhcccHH----------HHHHHHHhHHHHHHHHHhhhc
Q 035696 254 KIISLLDMKDLQMKLLAMDCILEIGYFGRKE----------AIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 254 kiislLdskdl~~r~~amdCileIgy~GrKe----------~IEaML~~glVeKLv~LqRse 305 (405)
.++.+|+.+|.+++..++.++--+...+.+. ..+.+.+.|.+++|..|+.++
T Consensus 365 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 426 (450)
T 2jdq_A 365 PLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE 426 (450)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC
Confidence 9999999999999999999999998877653 457777889999999998654
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.60 E-value=8.6e-07 Score=84.43 Aligned_cols=195 Identities=18% Similarity=0.275 Sum_probs=144.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhC
Q 035696 101 SISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCN 180 (405)
Q Consensus 101 ~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~ 180 (405)
.+..++..-..-++..++...+..|+..|++ .+..-...++.-+-+ +..+ ++.....++..++++.|-.+|.+
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-----~~~~v~~~a~~~L~~-l~~~-~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGN-IVTG-NDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHH-HTTS-CHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----CChhhHHHHHHHHHH-HHcC-CHHHHHHHHHcchHHHHHHHHcC
Confidence 3344443334456777777788899999986 344434444444444 4444 45566677888999999999976
Q ss_pred CCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcC--hhHHHHHhcCc
Q 035696 181 PSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKS--PLVDEIESNGE 251 (405)
Q Consensus 181 ~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~s--pLvDei~~~Ge 251 (405)
+ ...||..+++++..|+..+. ..+..++...+++.|+.+.+. .+..+|+++...... .....+...|-
T Consensus 353 ~--~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 353 P--KENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp S--CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred C--CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 6 56899999999999996443 344556667889999988765 567778887765332 35788889999
Q ss_pred hHHHHHhhccCcchhhHhhhhhhhhhhhcccHH----------HHHHHHHhHHHHHHHHHhhhc
Q 035696 252 IPKIISLLDMKDLQMKLLAMDCILEIGYFGRKE----------AIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 252 IpkiislLdskdl~~r~~amdCileIgy~GrKe----------~IEaML~~glVeKLv~LqRse 305 (405)
||.++.+|..+|.+++..+++++..+...+.+. ....+.+.|.+++|..|+.+.
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~ 493 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE 493 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC
Confidence 999999999999999999999999998887653 456677889999999998554
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.60 E-value=2e-06 Score=81.96 Aligned_cols=194 Identities=14% Similarity=0.219 Sum_probs=147.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHH
Q 035696 99 THSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETIL 178 (405)
Q Consensus 99 ~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L 178 (405)
...+..++..-....+.+++...+..|+..|++ .+.+-...++.-|-+ +. +.+++.++.++..++++.|-.+|
T Consensus 152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~vr~~A~~aL~~-l~-~~~~~~~~~~~~~~~l~~L~~ll 224 (530)
T 1wa5_B 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-----GSVEVKEQAIWALGN-VA-GDSTDYRDYVLQCNAMEPILGLF 224 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-----CCHHHHHHHHHHHHH-HH-TTCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hh-CCCccchHHHHHcCcHHHHHHHh
Confidence 344555555444456777888889999999996 345444455555555 32 34678999999999999999999
Q ss_pred hCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcC
Q 035696 179 CNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNG 250 (405)
Q Consensus 179 ~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~G 250 (405)
.+ .+..||..+++++..|.+ ++++....+...++++.|+.+... .+..+|..|.. ..| .++.+...|
T Consensus 225 ~~--~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~ 299 (530)
T 1wa5_B 225 NS--NKPSLIRTATWTLSNLCR-GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQEAIQAVIDVR 299 (530)
T ss_dssp GS--CCHHHHHHHHHHHHHHHC-CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHHTT
T ss_pred cc--CCHHHHHHHHHHHHHHhC-CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCHHHHHHHHhcC
Confidence 76 356799999999999985 444556677788999999999876 34445555443 223 377888889
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
-+|.++.+|...+..++..|+.++-.|+. |..+..+.++..|++..|+.+=.+.
T Consensus 300 ~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 300 IPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred cHHHHHHHHCCCChhhHHHHHHHHHHHHc-CCHHHHHHHHHcchHHHHHHHHcCC
Confidence 99999999999999999999999988875 5667888889999999999886443
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.51 E-value=1.4e-06 Score=84.18 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=138.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhh
Q 035696 110 ETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLRE 189 (405)
Q Consensus 110 e~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe 189 (405)
..-++.-++-..+..|+..|+. .+..-+..++.-+-+ +. ..+.+....++..+.++.|-.+|..+ +..||.
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~al~aL~n-l~-~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~v~~ 334 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGA-----TELPIVTPALRAIGN-IV-TGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQK 334 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTC-----SCHHHHHHHHHHHHH-HT-TSCHHHHHHHHHTTGGGGCC-CTTCS--SHHHHH
T ss_pred hhhHHHHHhcccchhhhhhhcC-----CChhhhhHHHHHHHH-hh-cCCHHHHHHHhhccchHHHHHHhcCC--CHHHHH
Confidence 3445555666677888888885 445444555555555 43 34677788888999999998888654 567999
Q ss_pred hhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccC
Q 035696 190 QSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMK 262 (405)
Q Consensus 190 ~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdsk 262 (405)
++|+++..|.. +....+..+....+++.|+.+.+. .|..+|+.+...-...-+..|.+.|-||.++.+|+++
T Consensus 335 ~A~~aL~nl~a-~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 335 EATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 99999999984 555567778888999999999887 4556677766532222377788999999999999999
Q ss_pred cchhhHhhhhhhhhhhh----cccHHHHHHHH-HhHHHHHHHHHhhhcc
Q 035696 263 DLQMKLLAMDCILEIGY----FGRKEAIDAML-EQGLVKKLVELQRSEL 306 (405)
Q Consensus 263 dl~~r~~amdCileIgy----~GrKe~IEaML-~~glVeKLv~LqRse~ 306 (405)
|.+++..+++++--|-. .|..+-+..|+ +.|-++||-.||-++.
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 462 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 99999999988655543 35566666666 4599999999997664
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.51 E-value=1.5e-06 Score=84.02 Aligned_cols=186 Identities=18% Similarity=0.280 Sum_probs=138.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhh
Q 035696 110 ETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLRE 189 (405)
Q Consensus 110 e~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe 189 (405)
..-++.-++-..+..|+..|+. .+..-+..++.-+-+ +.. .+++....++..+..+.|-.+|..+ +..||.
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~n-l~~-~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~ 353 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLGA-----TELPIVTPALRAIGN-IVT-GTDEQTQKVIDAGALAVFPSLLTNP--KTNIQK 353 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTC-----SCHHHHHHHHHHHHH-HTT-SCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHH
T ss_pred hhhHHHHHhccchHHHHHHhcC-----CChhHHHHHHHHHHH-HHc-cchHHHHHHhhcccHHHHHHHHcCC--CHHHHH
Confidence 3445566666677888888885 455445555555555 433 4667788889999999999999654 567999
Q ss_pred hhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhcc
Q 035696 190 QSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDM 261 (405)
Q Consensus 190 ~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLds 261 (405)
++|+++..|.. +....+..+....+++.|+.+... .|..+|+.+... ++|= +..|...|-||.++.+|++
T Consensus 354 ~a~~aL~nl~~-~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~-~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 354 EATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG-GTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHhc-ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCcCHHHHHHHhcC
Confidence 99999999984 455566677888899999998887 455567766543 3333 6778899999999999999
Q ss_pred CcchhhHhhhhhhhhhhhc----ccHHHHHHHH-HhHHHHHHHHHhhhcc
Q 035696 262 KDLQMKLLAMDCILEIGYF----GRKEAIDAML-EQGLVKKLVELQRSEL 306 (405)
Q Consensus 262 kdl~~r~~amdCileIgy~----GrKe~IEaML-~~glVeKLv~LqRse~ 306 (405)
+|.+++..+++++--|--+ |..+-+-.|+ +.|-++||-.||-++.
T Consensus 432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 481 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 481 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999998887665433 4556555554 5688999999996653
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.50 E-value=1.5e-06 Score=81.17 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcccCCC-------CCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHH-HHhCCCCCcchhhhh
Q 035696 120 EHIERLTKALKDLDGD-------GGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLET-ILCNPSCSKSLREQS 191 (405)
Q Consensus 120 e~i~~Lv~~L~d~~~~-------~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~-~L~~~~~s~~VRe~s 191 (405)
+.+...+..|++++.. .++.++.+.++..|+.-+. +.+-...+.+.+.++.|=. +|..+ +..||+++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~dna~~~~~~G~l~~Lv~~lL~s~--~~~vr~~A 102 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMDNAADFCQLSGMHLLVGRYLEAG--AAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHTTTTCS--SHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---ChhhHHHHHHcCCHHHHHHHHHcCC--CHHHHHHH
Confidence 4566777788874222 2334688899999999664 3345555677788887766 88644 56899999
Q ss_pred HHHHHHHHhhcCCceeeeecccccHHHHHHhccc--------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCc
Q 035696 192 AYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST--------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKD 263 (405)
Q Consensus 192 Af~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~--------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskd 263 (405)
|++|..++. |.+.+=..|+....++.|+.+.+. .|..+|+++++. ..|..+.+...|-||-++.+|.+.|
T Consensus 103 a~~Lg~ia~-~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 103 AQLIGTCSQ-NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCC
Confidence 999999984 444444456777888999888764 466677777652 2244778888899999999999999
Q ss_pred chhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 264 LQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 264 l~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
.+++.-|.-++-.++- |..+.++++.+.|+|+.|+.|=++.
T Consensus 181 ~~v~~~A~~aLs~L~~-~~~~~~~~vv~~g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVALVRTE 221 (296)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHh-CChHHHHHHHHcCCHHHHHHHHcCC
Confidence 9999999999888875 3678999999999999999997554
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.48 E-value=3e-06 Score=70.02 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=119.7
Q ss_pred HHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhh
Q 035696 112 EIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQS 191 (405)
Q Consensus 112 eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~s 191 (405)
-.+..++...|..|+..|++ .+.+-+..++.-+-+ +. ..+++.++.+...+..+.|=.+|.++ +..+|..+
T Consensus 46 ~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~-l~-~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a 116 (210)
T 4db6_A 46 QIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSN-IA-SGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEA 116 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHH-HT-TSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hh-cCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHH
Confidence 34455666788899999986 355555555555555 42 34778888999999999999999666 57899999
Q ss_pred HHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHhhccCc
Q 035696 192 AYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNGEIPKIISLLDMKD 263 (405)
Q Consensus 192 Af~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~GeIpkiislLdskd 263 (405)
++++..|.. +.+.....++....++.|+.+... .+..+|+++.. .+| ....+...|-||.++.+|.+.+
T Consensus 117 ~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~ 193 (210)
T 4db6_A 117 LWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHEN 193 (210)
T ss_dssp HHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHc-CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCcHHHHHHHHCCCHHHHHHHHhCCC
Confidence 999999985 444445566778899999999876 56667777765 323 3778889999999999999999
Q ss_pred chhhHhhhhhhhhhh
Q 035696 264 LQMKLLAMDCILEIG 278 (405)
Q Consensus 264 l~~r~~amdCileIg 278 (405)
.++|..|..++-.++
T Consensus 194 ~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 194 EKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886654
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.46 E-value=4.8e-06 Score=78.83 Aligned_cols=193 Identities=16% Similarity=0.202 Sum_probs=144.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh
Q 035696 100 HSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC 179 (405)
Q Consensus 100 ~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~ 179 (405)
..+..++..-..-.+..++...|.-|+..|++ .+.+-...++.-|-+ +. +.++..++.++..+.++.|-.+|.
T Consensus 140 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~aL~~-l~-~~~~~~~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 140 WALTNIASGTSENTKVVIDHGAVPIFVKLLGS-----SSDDVREQAVWALGN-VA-GDSPKCRDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHH-HH-HTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHH-Hh-CCChhhHHHHHHCCcHHHHHHHHh
Confidence 34444554334455667777889999999986 344444444544444 42 356889999999999988888884
Q ss_pred CCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcCc
Q 035696 180 NPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNGE 251 (405)
Q Consensus 180 ~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~Ge 251 (405)
++ .+..++..+++++..|.+.. +........++++.|+.+... .+..+|..|.. +.+ .++.+...|-
T Consensus 213 ~~-~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~ 287 (528)
T 4b8j_A 213 EH-TKLSMLRNATWTLSNFCRGK--PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--GTNDKIQAVIEAGV 287 (528)
T ss_dssp TT-CCHHHHHHHHHHHHHHHCSS--SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTC
T ss_pred cC-CCHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCH
Confidence 32 35689999999999998654 444555678899999999876 34444444442 222 2678888999
Q ss_pred hHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 252 IPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 252 IpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
||.++.+|...+..++..|+.++-.|++ |..+..+.++..|++..|+.+=.+.
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 9999999999999999999999999987 7788999999999999999886543
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.35 E-value=3.4e-06 Score=81.53 Aligned_cols=175 Identities=14% Similarity=0.211 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
...+.-|++.|.+ ++++-+..+..-+-+ +.. .+.+..+++..+++++.|-.+|..+ +..|+..++.++..|
T Consensus 250 ~~~lp~L~~LL~~-----~~~~v~~~a~~aL~~-l~~-~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 250 EQILPTLVRLLHH-----NDPEVLADSCWAISY-LTD-GPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNI 320 (529)
T ss_dssp HHHHHHHHHHTTS-----SCHHHHHHHHHHHHH-HHS-SCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcC-----CcHHHHHHHHHHHHH-hhh-hhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 3456677777775 445444445444444 433 4567778899999999999999654 567999999999999
Q ss_pred HhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhh
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLA 270 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~a 270 (405)
+ .+.|.....++....++.|+.+.+. .+..+|+++.. +++- .+.+...|-||.++.+|.+.+.++|..|
T Consensus 321 ~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 321 V-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp T-TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred H-ccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 8 4556666667777888888888775 45556666544 3444 7788899999999999999999999999
Q ss_pred hhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 271 MDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 271 mdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
..++.-+...|..+.+..|.+.|.|+.|+.|=++.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 99999999999999999999999999999998654
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.27 E-value=1.4e-05 Score=84.93 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=144.8
Q ss_pred hhhhhhhhhhhhhhhHHHHHHH---HhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchH
Q 035696 95 RRVSTHSISRVAGSIETEIQAW---IDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVF 171 (405)
Q Consensus 95 R~~~~~~isrva~~ie~eiqaw---iDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf 171 (405)
|......+++++..-..++ .| .-.+.|..|+.-|.. ..+......++.-+-+ +. ..+.+.+..|...+.+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~-~~~~~~~~~aIppLv~LL~~----~~~~l~~~eAl~AL~N-La-~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 553 KRHATQALARIGITINPEV-SFSGQRSLDVIRPLLNLLQQ----DCTALENFESLMALTN-LA-SMNESVRQRIIKEQGV 625 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHH-HTTTHHHHHTHHHHHHTTST----TSCHHHHHHHHHHHHH-HT-TSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCCChhh-hhcchhhhcHHHHHHHHhCC----CCcHHHHHHHHHHHHH-Hh-cCCHHHHHHHHHcCCH
Confidence 5555666777665544332 11 113478889988863 2333333345555555 32 3356888889999999
Q ss_pred HHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecc-cccHHHHHHhccc-------chHHHHHHHHHhhcChh-
Q 035696 172 SLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLM-GPTVQALLTMSST-------HSSKVLCELIKSIKSPL- 242 (405)
Q Consensus 172 ~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLm-g~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL- 242 (405)
+.|+.+|..+ +..||..++.+|..|+. +.+ ...++.. ...++.|+.+... .|..+|..|-. ++|-
T Consensus 626 ~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~-~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~--~s~~~ 699 (810)
T 3now_A 626 SKIEYYLMED--HLYLTRAAAQCLCNLVM-SED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS--VSVKC 699 (810)
T ss_dssp HHHHHHHHSC--CTTHHHHHHHHHHHHTT-SHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH--HCHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHhC-ChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC--CCHHH
Confidence 9999999755 46799999999999984 444 4455665 5789999999877 34455555544 2454
Q ss_pred HHHHHh-cCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhh
Q 035696 243 VDEIES-NGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQR 303 (405)
Q Consensus 243 vDei~~-~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqR 303 (405)
.+.|.. .|-||.++.+|.+.|.+++..|+.|+.-++. |.++..+.|.+.|.++.|+.|=+
T Consensus 700 ~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 700 CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHTSTHHHHHTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHh
Confidence 788888 8999999999999999999999999999988 77899999999999999999953
No 18
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.24 E-value=2.7e-05 Score=72.67 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=114.6
Q ss_pred HHHHHHHHH-HhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh-CCCCCcchhhhhHHHHH
Q 035696 119 REHIERLTK-ALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC-NPSCSKSLREQSAYSIA 196 (405)
Q Consensus 119 re~i~~Lv~-~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~-~~~~s~~VRe~sAf~v~ 196 (405)
--.+..|+. .|+. .+.+=+..+..-+-+ +. +.|++.|+.+++.+.++.|=.+|. ++ +..||+.++|+|+
T Consensus 80 ~G~l~~Lv~~lL~s-----~~~~vr~~Aa~~Lg~-ia-~~n~~~~~~vv~~g~l~~Ll~LL~~~~--~~~v~~~A~~ALs 150 (296)
T 1xqr_A 80 LSGMHLLVGRYLEA-----GAAGLRWRAAQLIGT-CS-QNVAAIQEQVLGLGALRKLLRLLDRDA--CDTVRVKALFAIS 150 (296)
T ss_dssp TTHHHHHHHTTTTC-----SSHHHHHHHHHHHHH-HH-TTCHHHHHHHHHTTHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHH-HH-hCCHHHHHHHHHCCCHHHHHHHHccCC--CHHHHHHHHHHHH
Confidence 344566777 6654 344333444444444 32 468999999999999999999995 43 4689999999999
Q ss_pred HHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHhhccCcchhhH
Q 035696 197 SLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNGEIPKIISLLDMKDLQMKL 268 (405)
Q Consensus 197 aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~GeIpkiislLdskdl~~r~ 268 (405)
.|++ |..+-.-.|...+.++.|+.+.+. .+..+|..|... +| ..+.+...|-||.++.+|.++|.+++.
T Consensus 151 nl~~-~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~ 227 (296)
T 1xqr_A 151 CLVR-EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227 (296)
T ss_dssp HHHT-TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHH
T ss_pred HHHc-CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcCCChhHHH
Confidence 9996 444444456667789999988776 455666666664 45 488899999999999999999999999
Q ss_pred hhhhhhhhhhhcccH
Q 035696 269 LAMDCILEIGYFGRK 283 (405)
Q Consensus 269 ~amdCileIgy~GrK 283 (405)
.++.++..|.-.+..
T Consensus 228 ~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 228 HVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCChh
Confidence 999999999876543
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.14 E-value=7.8e-05 Score=73.94 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=143.3
Q ss_pred hhhhhhhhhhhHHHHHHHH--hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHH
Q 035696 99 THSISRVAGSIETEIQAWI--DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLET 176 (405)
Q Consensus 99 ~~~isrva~~ie~eiqawi--Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~ 176 (405)
...++.++.. ..+.+..| ....|..||..|+. ++++-+..+..-+-+ ++.+-|.+.++.|..++..+.|=.
T Consensus 221 a~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s-----~~~~v~~~A~~aL~n-Ls~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 221 GMALTNLTFG-DVANKATLCSMKGCMRALVAQLKS-----ESEDLQQVIASVLRN-LSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHCHHHHHHHHHGGGC-----SCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCC-CcccHHHHHHcCCcHHHHHHHHhC-----CCHHHHHHHHHHHHH-HhcCCCHHHHHHHHHcCCHHHHHH
Confidence 3445555533 12455556 45569999999985 566666666666656 655557889999999999888888
Q ss_pred HHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccc-----------hHHHHHHHHHh-hcChh-H
Q 035696 177 ILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTH-----------SSKVLCELIKS-IKSPL-V 243 (405)
Q Consensus 177 ~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~-----------s~~vL~~Li~~-i~spL-v 243 (405)
+|.++. +..+++.++-++..|+..+.+.-.--+.....++.|+.+.... +..+|..|-.. -++|- .
T Consensus 294 lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 372 (458)
T 3nmz_A 294 CALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372 (458)
T ss_dssp HHTTCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 764322 4579999999999998644332111122678899999887642 22334443321 14555 7
Q ss_pred HHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 244 DEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 244 Dei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
..|...|-||.++.+|.+.+..++.-|.-++..+++ |..+...+|.+.|.|..|+.|=++.
T Consensus 373 ~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 373 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS-SCHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 788899999999999999999999999999999986 6789999999999999999997554
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.13 E-value=7.2e-05 Score=69.41 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=131.2
Q ss_pred HHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhcc--CChHHHHHHHhhchHHHHHHHHhCCCCCcchh
Q 035696 111 TEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQG--FSRELQDLVLKSKVFSLLETILCNPSCSKSLR 188 (405)
Q Consensus 111 ~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqg--fD~~lQdliL~sklf~~Le~~L~~~~~s~~VR 188 (405)
.-.+..++...+..|+..|++. ..+.+-+..++.-+-+ +..+ -+...|+.+...+.++.|-.+|.++. ...||
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~---~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~ 373 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRA---GDREDITEPAICALRH-LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLI 373 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHH---TTCHHHHHHHHHHHHH-HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcc---CCHHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHcCChhHHHHHhcccc-chHHH
Confidence 3455566667889999999863 2223334445555544 4332 12447889999999999999996652 34899
Q ss_pred hhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-----------------------------chHHHHHHHHHhhc
Q 035696 189 EQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-----------------------------HSSKVLCELIKSIK 239 (405)
Q Consensus 189 e~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-----------------------------~s~~vL~~Li~~i~ 239 (405)
.++++++..++..+.. ...+....+++.|+.+... .+..+|+.|..
T Consensus 374 ~~a~~~l~nl~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--- 448 (529)
T 1jdh_A 374 KATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--- 448 (529)
T ss_dssp HHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhcChhh--hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc---
Confidence 9999999999853332 2455666788888877543 12334444433
Q ss_pred Chh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 240 SPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 240 spL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
.|- -..|.+.|-||.++.+|...+..++..+..++..++. ..+..+.+.+.|.+++|+.|+.++
T Consensus 449 ~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~~i~~~~~~~~L~~l~~~~ 513 (529)
T 1jdh_A 449 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSR 513 (529)
T ss_dssp SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CHHHHHHHHHcCChHHHHHHhcCC
Confidence 332 4568889999999999999999999999999988874 467788888999999999999554
No 21
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.12 E-value=5.4e-05 Score=72.15 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=145.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHH--hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHH
Q 035696 95 RRVSTHSISRVAGSIETEIQAWI--DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFS 172 (405)
Q Consensus 95 R~~~~~~isrva~~ie~eiqawi--Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~ 172 (405)
++.....++.++.. ..+.+..| ..-.|..||..|+. ++++-+..+..-+-+ ++.+-|.+.++.|..++.++
T Consensus 101 q~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s-----~~~~v~~~A~~aL~n-Ls~~~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 101 RRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKS-----ESEDLQQVIASVLRN-LSWRADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHHCHHHHHHHHHGGGC-----SCHHHHHHHHHHHHH-HHTTCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHcCCcHHHHHHHHCC-----CCHHHHHHHHHHHHH-HhccCCHHHHHHHHHCCCHH
Confidence 33344555555533 23466666 44559999999985 566666666666666 55555788999999999998
Q ss_pred HHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccc-----------hHHHHHHHHHhh-cC
Q 035696 173 LLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTH-----------SSKVLCELIKSI-KS 240 (405)
Q Consensus 173 ~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~-----------s~~vL~~Li~~i-~s 240 (405)
.|=.+|..+ .+..+++.++.++..|+..+.+.-.-.+.....|+.|+.+..-. +..+|..|-..+ ++
T Consensus 174 ~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 174 ALMECALEV-KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 888876322 14579999999999998634332211222678899999887642 223344433211 34
Q ss_pred hh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 241 PL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 241 pL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
|- .+.|...|-||.++.+|.+.+..++.-|.-++.-+++ |..+...+|.+.|.|..|+.|-++.
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~G~i~~Lv~LL~s~ 317 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSK 317 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-SCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC-CCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 54 7888899999999999999999999999999999976 6889999999999999999998664
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.11 E-value=1.5e-05 Score=77.12 Aligned_cols=174 Identities=14% Similarity=0.208 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 120 EHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 120 e~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
..+.-|++.|.+ .+++-+..+..-+-. +.. .+.+...++..+++.+.|-.+|..+ +..|+..++.++..++
T Consensus 232 ~~lp~L~~LL~~-----~~~~v~~~A~~aL~~-L~~-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 232 QILPTLVRLLHH-----NDPEVLADSCWAISY-LTD-GPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHHHHHTTC-----SCHHHHHHHHHHHHH-HTS-SCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHHH-Hhh-chhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHHHHHhh
Confidence 455667777765 444444444444444 433 4566778889999999999999654 5679999999999988
Q ss_pred hhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhh
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAM 271 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~am 271 (405)
.+.+.....++....++.|+.+.+. .+..+|++|.. +++- ...+...|-||.++.+|.+.+.++|.-|.
T Consensus 303 -~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 303 -TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA--GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp -TSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred -cCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 4555555666677777777777665 34455555543 3343 78888999999999999999999999999
Q ss_pred hhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 272 DCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 272 dCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
.++.-+...|..+.+..|.+.|.|+.|+.|=++.
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 9999999999999999999999999999997654
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.02 E-value=7.1e-05 Score=73.78 Aligned_cols=182 Identities=17% Similarity=0.129 Sum_probs=130.1
Q ss_pred HHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhc--cCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhh
Q 035696 113 IQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQ--GFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQ 190 (405)
Q Consensus 113 iqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsq--gfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~ 190 (405)
.+.-++...+..|+..|.+. ...++-+..++.-+-+ +.. +-|...|..+...+.++.|-.+|.++ ....||..
T Consensus 298 ~~~v~~~g~v~~Lv~lL~~~---~~~~~v~~~a~~aL~n-L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~ 372 (644)
T 2z6h_A 298 KMMVCQVGGIEALVRTVLRA---GDREDITEPAICALRH-LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKA 372 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHH---TTCHHHHHHHHHHHHH-HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcc---CCcHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHH
Confidence 45556666789999999863 1123333333333333 432 22336788899999999999999654 23489999
Q ss_pred hHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-----------------------------chHHHHHHHHHhhcCh
Q 035696 191 SAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-----------------------------HSSKVLCELIKSIKSP 241 (405)
Q Consensus 191 sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-----------------------------~s~~vL~~Li~~i~sp 241 (405)
+++++..|+..+.+. ..+....+|+.|+.+... .+..+|+.|.+ .+
T Consensus 373 a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~---~~ 447 (644)
T 2z6h_A 373 TVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR---DV 447 (644)
T ss_dssp HHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT---SH
T ss_pred HHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc---CH
Confidence 999999998654433 566677788888877653 23334444432 23
Q ss_pred h-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhcc
Q 035696 242 L-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSEL 306 (405)
Q Consensus 242 L-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse~ 306 (405)
- ...|...|-||.++.+|.+.+..++..|..++..++. .++.-+.+.+.|.+++|++|+.++.
T Consensus 448 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~i~~~g~l~~L~~ll~~~~ 511 (644)
T 2z6h_A 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRN 511 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CHHHHHHHHHcCChhHHHHHHcCCC
Confidence 2 4567788999999999999999999999999888874 4778888889999999999997763
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.99 E-value=0.00016 Score=74.35 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=136.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChH---HHHHHHhhchHHHHH
Q 035696 99 THSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRE---LQDLVLKSKVFSLLE 175 (405)
Q Consensus 99 ~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~---lQdliL~sklf~~Le 175 (405)
...++.++..-....+.-++...+..|+..|.+. ...++-+..++.-+-+ +.. .+++ .|..|...+.++.|-
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~v~~~Al~aL~n-L~~-~~~~~~~~~~~v~~~~~l~~L~ 494 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDREDITEPAICALRH-LTS-RHQDAEMAQNAVRLHYGLPVVV 494 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH---TTCHHHHHHHHHHHHH-TTS-SSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc---CCHHHHHHHHHHHHHH-HHh-cCchHHHHHHHHHHcCCHHHHH
Confidence 3444455444445567777788899999999873 1222333444444444 432 2333 578888999999999
Q ss_pred HHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccc-----------------------------
Q 035696 176 TILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTH----------------------------- 226 (405)
Q Consensus 176 ~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~----------------------------- 226 (405)
.+|..+ ....||..+++++..|+..+.+ ...+....+|+.|+.+....
T Consensus 495 ~lL~~~-~~~~v~~~A~~aL~nLa~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~ 571 (780)
T 2z6g_A 495 KLLHPP-SHWPLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEA 571 (780)
T ss_dssp HTTSTT-CCHHHHHHHHHHHHHHHSSHHH--HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHH
T ss_pred HHhcCC-ChHHHHHHHHHHHHHHhcCHHH--HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHH
Confidence 988654 2338999999999999964333 24555667788888766431
Q ss_pred hHHHHHHHHHhhcChh-HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 227 SSKVLCELIKSIKSPL-VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 227 s~~vL~~Li~~i~spL-vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
+..+|+.|. .+|- ...|...|-||.++.+|.+.+..++..|..++..++ ..++.-+.+.+.|.|++|+.|..++
T Consensus 572 a~~aL~~La---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~--~~~~~~~~i~~~g~i~~L~~Ll~~~ 646 (780)
T 2z6g_A 572 CTGALHILA---RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSR 646 (780)
T ss_dssp HHHHHHHHT---TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHh---cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 233444442 2333 445778999999999999999999999999999887 4588888999999999999999765
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.88 E-value=3.8e-05 Score=73.18 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh-C--------CCCCcchhhhhHHHHHHHHhhcCCceee
Q 035696 138 NVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC-N--------PSCSKSLREQSAYSIASLIRFNKDVFVG 208 (405)
Q Consensus 138 ~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~-~--------~~~s~~VRe~sAf~v~aLvrfnkdvfVg 208 (405)
+++++-+++.-+-+ + .||++.++.|...+..+.|-.+|. + +..+..++.++|+++..|. +|.+..--
T Consensus 45 ~~~~~~~A~~aL~n-l--s~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa-~~~~~~k~ 120 (354)
T 3nmw_A 45 VEHQICPAVCVLMK-L--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT-FGDVANKA 120 (354)
T ss_dssp GGGTHHHHHHHHHH-H--HTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHT-SSCHHHHH
T ss_pred chHHHHHHHHHHHH-H--cCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHH-cCCHHHHH
Confidence 34566666666655 4 578999999999999999999993 2 2234579999999999998 55553222
Q ss_pred ee-cccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHhh-ccCcchhhHhhhhhhhhhh
Q 035696 209 QV-LMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNGEIPKIISLL-DMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 209 ~v-Lmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~GeIpkiislL-dskdl~~r~~amdCileIg 278 (405)
.| -.+.+|+.||.+... .+..+|..|-.. ..+ --+.|...|-||.+|.+| .+.+..++..|..++..++
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22 268899999999876 455666666432 123 367788899999999974 6678999999999999999
Q ss_pred hcccHHHHHHHHHhHHHHHHHHHhhhccC
Q 035696 279 YFGRKEAIDAMLEQGLVKKLVELQRSELG 307 (405)
Q Consensus 279 y~GrKe~IEaML~~glVeKLv~LqRse~g 307 (405)
+....-........|.|.-||.|=++...
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~ 228 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQ 228 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCC
Confidence 85533222223378999999999876543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.87 E-value=0.00046 Score=64.04 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=127.8
Q ss_pred HHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHH
Q 035696 116 WIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSI 195 (405)
Q Consensus 116 wiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v 195 (405)
.++...+..|+..|++. ..+ .........-.-++ .+++.++.+...+..+.|-.+|.++ +..++..+++++
T Consensus 181 i~~~~~i~~L~~ll~~~----~~~-~~~~~a~~~L~~l~--~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L 251 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTY----TYE-KLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTL 251 (529)
T ss_dssp HHHTTHHHHHHHHHHHC----CCH-HHHHHHHHHHHHHT--TSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhC----ChH-HHHHHHHHHHHHHh--cCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHH
Confidence 35566788899989873 333 23222222222243 4788899999999999999888665 678999999999
Q ss_pred HHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHhhccC--cch
Q 035696 196 ASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP-LVDEIESNGEIPKIISLLDMK--DLQ 265 (405)
Q Consensus 196 ~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-LvDei~~~GeIpkiislLdsk--dl~ 265 (405)
..|.+.... +. -..++++.|+.+... .+..+|..|.. .+| ..+.+...|-||.++.+|... +..
T Consensus 252 ~~l~~~~~~-~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 252 RNLSDAATK-QE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHTTCTT-CS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--TCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCChh-hH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 999976544 22 245789999998876 45566666633 344 478888999999999999864 378
Q ss_pred hhHhhhhhhhhhhhcc--cHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 266 MKLLAMDCILEIGYFG--RKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 266 ~r~~amdCileIgy~G--rKe~IEaML~~glVeKLv~LqRse 305 (405)
++..|+.++--+++.. ....-..+...|.+..|+.+=+++
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~ 367 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc
Confidence 9999999998887642 244667888999999999986654
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.82 E-value=0.00029 Score=69.44 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHh-hchHHHHHHHHhCCCCCcchhhhhHHHHH
Q 035696 118 DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLK-SKVFSLLETILCNPSCSKSLREQSAYSIA 196 (405)
Q Consensus 118 Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~-sklf~~Le~~L~~~~~s~~VRe~sAf~v~ 196 (405)
+.-.|..|+..|++ .+..-+.+++.-+-+ +....+ -+..+.. .++++.|-..|.++ .+..+|..++.++.
T Consensus 12 ~~g~i~~Lv~lL~~-----~~~~vr~~A~~~L~~-La~~~~--~~~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 12 ATRAIPELTKLLND-----EDQVVVNKAAVMVHQ-LSKKEA--SRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLH 82 (644)
T ss_dssp CTTTHHHHHHHHTC-----SCHHHHHHHHHHHHH-HHTSTT--HHHHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHcC-----CCHHHHHHHHHHHHH-HHCCCh--hHHHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 34457788888885 455555555555554 544433 3344443 36777777777532 24579999999999
Q ss_pred HHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHh
Q 035696 197 SLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLL 269 (405)
Q Consensus 197 aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~ 269 (405)
.|.+. .+ ....+.....|+.|+.+.+. .+..+|..|.... .+....+...|-||.++.+|.+++.+.+..
T Consensus 83 ~Ls~~-~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 83 NLSHH-RE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159 (644)
T ss_dssp HHTTS-HH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHhcC-hh-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence 88743 33 34445566789999999876 5667777776643 344667778999999999999999999999
Q ss_pred hhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 270 AMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 270 amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
++.|+..+++ |..+.-..+.+.|.|+.|+.+-++.
T Consensus 160 a~~~L~~La~-~~~~~~~~i~~~g~v~~Lv~lL~~~ 194 (644)
T 2z6h_A 160 TTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 194 (644)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-cCcHHHHHHHHcCChHHHHHHHHcC
Confidence 9999999987 7788888999999999999998765
No 28
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.79 E-value=0.00013 Score=70.03 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=126.7
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.|..||..|+. ++.+.+..+..-+-. +. ..|+..+..|...+.++.|=.+|..+ +..++.+++.++..|+.
T Consensus 3 ~l~~lv~~L~s-----~~~~~q~~A~~~L~~-l~-~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 3 TIPKAVQYLSS-----QDEKYQAIGAYYIQH-TC-FQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVF 73 (457)
T ss_dssp CHHHHHHHHHS-----SCTHHHHHHHHHHHH-HT-SSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHCC-----CCHHHHHHHHHHHHH-HH-cCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhc
Confidence 46789999986 466777788887777 54 35677787889999999999999643 55799999999999995
Q ss_pred hcCCceeeeecccccHHHHHHhcc-c-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhc--------cC--
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSS-T-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLD--------MK-- 262 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s-~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLd--------sk-- 262 (405)
. .+..--.+.....|+.||.+.+ . .+..+|.+|-.. ...-+.|.+ |-||.++.+|. +.
T Consensus 74 ~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 74 R-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp S-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC-----
T ss_pred C-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccc
Confidence 3 2333444567889999999998 4 345566666543 344556778 99999999993 33
Q ss_pred ------cchhhHhhhhhhhhhhhcccHHHHHHHHHh-HHHHHHHHHhhh
Q 035696 263 ------DLQMKLLAMDCILEIGYFGRKEAIDAMLEQ-GLVKKLVELQRS 304 (405)
Q Consensus 263 ------dl~~r~~amdCileIgy~GrKe~IEaML~~-glVeKLv~LqRs 304 (405)
+..+..-|.-++.-++-. .+..++|.+. |.|..|+.|=++
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHh
Confidence 334444788888888853 7899999986 999999988765
No 29
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.79 E-value=0.00011 Score=72.85 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=109.7
Q ss_pred cCChHHHHHHHhhchHHHHHHHHh-C--------CCCCcchhhhhHHHHHHHHhhcCCceeeee-cccccHHHHHHhccc
Q 035696 156 GFSRELQDLVLKSKVFSLLETILC-N--------PSCSKSLREQSAYSIASLIRFNKDVFVGQV-LMGPTVQALLTMSST 225 (405)
Q Consensus 156 gfD~~lQdliL~sklf~~Le~~L~-~--------~~~s~~VRe~sAf~v~aLvrfnkdvfVg~v-Lmg~~V~aLI~m~s~ 225 (405)
+||++.++.|...+..+.|-.+|. + +..+..++.++|+++..|. +|++..--.| -.+.+|+.||.+...
T Consensus 176 s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa-~~~~~~k~~i~~~~GaIp~LV~LL~s 254 (458)
T 3nmz_A 176 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT-FGDVANKATLCSMKGCMRALVAQLKS 254 (458)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh-CCCcccHHHHHHcCCcHHHHHHHHhC
Confidence 789999999999999999999993 1 2234569999999999998 5655432222 268889999999887
Q ss_pred c-------hHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHh-hccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHH
Q 035696 226 H-------SSKVLCELIKSIKSP-LVDEIESNGEIPKIISL-LDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVK 296 (405)
Q Consensus 226 ~-------s~~vL~~Li~~i~sp-LvDei~~~GeIpkiisl-Ldskdl~~r~~amdCileIgy~GrKe~IEaML~~glVe 296 (405)
. +..+|..|-.. ..+ --+.|...|-||.+|.+ +.+.+..++..|..++.-|+..+..-........|.|.
T Consensus 255 ~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 255 ESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp SCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 3 33444444221 123 35778889999999997 56678999999999999999854322222233789999
Q ss_pred HHHHHhhhccC
Q 035696 297 KLVELQRSELG 307 (405)
Q Consensus 297 KLv~LqRse~g 307 (405)
-|+.|=++...
T Consensus 334 ~Lv~LL~~~~~ 344 (458)
T 3nmz_A 334 FLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHTTCCCS
T ss_pred HHHHHhcCCCC
Confidence 99999866543
No 30
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.60 E-value=0.00022 Score=68.36 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=108.5
Q ss_pred HHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHH
Q 035696 115 AWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYS 194 (405)
Q Consensus 115 awiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~ 194 (405)
+-++...|..||..|+. ++.+-+..+..-|-+ ++. .+++.+..|..++.++.|=.+|.++ .+..++++++++
T Consensus 39 ~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~n-La~-~~~~~k~~i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~a 110 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRS-----PNQNVQQAAAGALRN-LVF-RSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGL 110 (457)
T ss_dssp HHHHTTHHHHHHHHTTS-----SCHHHHHHHHHHHHH-HHS-SCHHHHHHHHHTTCHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hhc-CCHHHHHHHHHcCCHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 44566778999999985 566666667777766 444 3689999999999999999999632 256899999999
Q ss_pred HHHHHhhcCCceeeeecccccHHHHHHhccc-----------------------chHHHHHHHHHhhcChh-HHHHHhc-
Q 035696 195 IASLIRFNKDVFVGQVLMGPTVQALLTMSST-----------------------HSSKVLCELIKSIKSPL-VDEIESN- 249 (405)
Q Consensus 195 v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-----------------------~s~~vL~~Li~~i~spL-vDei~~~- 249 (405)
+..|+.. +.+--.+.. ..++.|+.+... .+..+|..|-. .|- .+.|.+.
T Consensus 111 L~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~---~~~~~~~i~~~~ 184 (457)
T 1xm9_A 111 LWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS---ADAGRQTMRNYS 184 (457)
T ss_dssp HHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT---SHHHHHHHTTST
T ss_pred HHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc---CHHHHHHHHHcC
Confidence 9999954 333334556 899999999831 34555555553 354 7788887
Q ss_pred CchHHHHHhhcc------CcchhhHhhhhhhhhhh
Q 035696 250 GEIPKIISLLDM------KDLQMKLLAMDCILEIG 278 (405)
Q Consensus 250 GeIpkiislLds------kdl~~r~~amdCileIg 278 (405)
|-||.++.+|.+ .|.++..-++-++-.+.
T Consensus 185 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp THHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 999999999986 46666655555444443
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.53 E-value=0.00082 Score=71.68 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=132.2
Q ss_pred HHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhH
Q 035696 113 IQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSA 192 (405)
Q Consensus 113 iqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sA 192 (405)
+|+-++.-.|.-||..|+. ++.+-+-++..=+-+ ++ .|++.++.|.+.+.++.|=.+|..+ +..+|+.+|
T Consensus 488 ~~~VveaGaVp~LV~LL~s-----~s~~vqe~Aa~aL~N-LA--~d~~~r~~Vv~~Gaip~Lv~LL~s~--~~~~k~~Aa 557 (810)
T 3now_A 488 ITVLANEGITTALCALAKT-----ESHNSQELIARVLNA-VC--GLKELRGKVVQEGGVKALLRMALEG--TEKGKRHAT 557 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTC-----CCHHHHHHHHHHHHH-HH--TSHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hc--CCHHHHHHHHHCCCHHHHHHHHccC--CHHHHHHHH
Confidence 5677788889999999985 444444444444444 44 3788999999999999999999544 457899999
Q ss_pred HHHHHHHhhcC-Cc-eeeeecccccHHHHHHhcccc-h----HHHHHHHHHhhcCh--hHHHHHhcCchHHHHHhhccCc
Q 035696 193 YSIASLIRFNK-DV-FVGQVLMGPTVQALLTMSSTH-S----SKVLCELIKSIKSP--LVDEIESNGEIPKIISLLDMKD 263 (405)
Q Consensus 193 f~v~aLvrfnk-dv-fVg~vLmg~~V~aLI~m~s~~-s----~~vL~~Li~~i~sp--LvDei~~~GeIpkiislLdskd 263 (405)
.+++.|..... ++ |-++.. ...|+.|+.+.+.. . +.++..|-..-.++ ..+.|...|-+|+|+.+|.+.+
T Consensus 558 ~AL~nL~~~~~p~~~~~~~~~-~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~ 636 (810)
T 3now_A 558 QALARIGITINPEVSFSGQRS-LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH 636 (810)
T ss_dssp HHHHHHHHHSCHHHHTTTHHH-HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCChhhhhcchhh-hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 99999985422 22 222211 24889999987641 1 23444444444443 3677888899999999999999
Q ss_pred chhhHhhhhhhhhhhhcccHHHHHHHHH-hHHHHHHHHHhhhc
Q 035696 264 LQMKLLAMDCILEIGYFGRKEAIDAMLE-QGLVKKLVELQRSE 305 (405)
Q Consensus 264 l~~r~~amdCileIgy~GrKe~IEaML~-~glVeKLv~LqRse 305 (405)
..++..|..|+.-|+. ..+....+.. .|.++-|+.|=+++
T Consensus 637 ~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 637 LYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp TTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCC
Confidence 9999999999999986 4567777774 68999999998664
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.30 E-value=0.003 Score=65.03 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=125.2
Q ss_pred HHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHh-hchHHHHHHHHhCCCCCcchhhhhHHH
Q 035696 116 WIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLK-SKVFSLLETILCNPSCSKSLREQSAYS 194 (405)
Q Consensus 116 wiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~-sklf~~Le~~L~~~~~s~~VRe~sAf~ 194 (405)
.|....|..|+..|.+ .+..-+..++.-+-. +.... .-+..+.. ..+.+.|-.+|.++ .+..+|..++.+
T Consensus 146 ~i~~g~ip~Lv~lL~~-----~d~~vr~~A~~~L~~-L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~a 216 (780)
T 2z6g_A 146 ELATRAIPELTKLLND-----EDQVVVNKAAVMVHQ-LSKKE--ASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTSGT 216 (780)
T ss_dssp HHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHH-HHTSH--HHHHHHTTCHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHCC-----CCHHHHHHHHHHHHH-HhCCC--hhHHHHHhccChHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 4557788999999985 344445555544444 43332 23344443 36777777778533 245799999999
Q ss_pred HHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhh
Q 035696 195 IASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMK 267 (405)
Q Consensus 195 v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r 267 (405)
+..|.+ +.+. .-.+.....|+.|+.+... .|..+|..|.... ......+...|-||.++.+|.+.+.+++
T Consensus 217 L~~Ls~-~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~ 293 (780)
T 2z6g_A 217 LHNLSH-HREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFL 293 (780)
T ss_dssp HHHHHT-SHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHH
T ss_pred HHHHhC-Cchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 999874 3333 3334455789999999876 4666666666531 1224456678999999999999999999
Q ss_pred HhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 268 LLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 268 ~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse 305 (405)
..+++|+--+++ +..+....+.+.|.|+.|+.+=|+.
T Consensus 294 ~~a~~aL~~La~-~~~e~~~~i~~~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 294 AITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHTTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHHhcC
Confidence 999999987775 7788888999999999999987643
No 33
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.15 E-value=0.018 Score=60.81 Aligned_cols=183 Identities=15% Similarity=0.240 Sum_probs=128.3
Q ss_pred HHHHHHH------hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhh-chHHHHHHHHhCCCC
Q 035696 111 TEIQAWI------DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKS-KVFSLLETILCNPSC 183 (405)
Q Consensus 111 ~eiqawi------Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~s-klf~~Le~~L~~~~~ 183 (405)
.||..|+ +.++|.-|+.-|+. .+..-.+-+++=++. +..+-..++|+.||.. .-.+.|=.+|.|+
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~-----~df~vR~~alqlL~~-L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-- 178 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEE-----FDFHVRWPGVKLLTS-LLKQLGPQVQQIILVSPMGVSRLMDLLADS-- 178 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTC-----CCHHHHHHHHHHHHH-HHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcC-----ccHHHHHHHHHHHHH-HHhcCcHHHHHHHHhCcccHHHHHHHHhCc--
Confidence 4555665 67889999999875 666667777777777 6677677799999966 7788888899877
Q ss_pred CcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-----------chHHHHHHHHHhhcChhHHH-HHhcCc
Q 035696 184 SKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-----------HSSKVLCELIKSIKSPLVDE-IESNGE 251 (405)
Q Consensus 184 s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-----------~s~~vL~~Li~~i~spLvDe-i~~~Ge 251 (405)
+..||.++..++++|.+.|.++= +.|-.-++.+.|+++... -.+..|+.|++. .|.-+. |...|-
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQ-klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~--N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQ-KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN--NNSNQNFFKEGSY 255 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHH-HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc--CHHHHHHHHHcCC
Confidence 57899999999999998775421 011111233333333322 234457777764 444334 455789
Q ss_pred hHHHHHhhccCcchh------hHhhhhhhhhhhhc---------ccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 252 IPKIISLLDMKDLQM------KLLAMDCILEIGYF---------GRKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 252 IpkiislLdskdl~~------r~~amdCileIgy~---------GrKe~IEaML~~glVeKLv~LqRse 305 (405)
||+++.+|+.++ .. |..++.|+++|.-. +++.+=.+|.+.|++..|+.|=++.
T Consensus 256 i~~L~~LL~~~~-~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 256 IQRMKPWFEVGD-ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp GGGGGGGGCCCS-CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCc-cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 999999998753 22 67787777776421 3778889999999999999998775
No 34
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.90 E-value=0.0073 Score=62.19 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 120 EHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 120 e~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
..|..||..|+. ++++.+..+...+-. +.. -+.+.+..|...+.++.|=.+|..+ +..|++++|.++..|+
T Consensus 48 ~~i~~LV~~L~s-----~~~~~q~~Aa~~L~~-La~-~~~~~k~~V~~~G~Ip~LV~LL~s~--~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 48 PELPEVIAMLGF-----RLDAVKSNAAAYLQH-LCY-RNDKVKTDVRKLKGIPVLVGLLDHP--KKEVHLGACGALKNIS 118 (584)
T ss_dssp CCHHHHHHHTTC-----SCHHHHHHHHHHHHH-HHT-TCHHHHHHHHHTTHHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHCC-----CCHHHHHHHHHHHHH-HHc-CChHHHHHHHHcCCcHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 357889999985 567777777766544 432 3777888999999999999999554 5689999999999999
Q ss_pred hhcCCceeeeecccccHHHHHHhccc-ch-------HHHHHHHHHhhcChhHHHHHhcCchHHHHHhh------------
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSST-HS-------SKVLCELIKSIKSPLVDEIESNGEIPKIISLL------------ 259 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~-~s-------~~vL~~Li~~i~spLvDei~~~GeIpkiislL------------ 259 (405)
....+..-..+.....|+.||.+.+. .. ..+|++|-. -...=..|...| ||-++.+|
T Consensus 119 ~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~~~k~~I~~~a-lp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS--HDSIKMEIVDHA-LHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp SSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SGGGHHHHHHHT-HHHHHHHTHHHHHCCC----
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--CchhhHHHHhcc-HHHHHHHHhccccccccccc
Confidence 53123444556678899999998875 22 235555533 222334455555 99999987
Q ss_pred ------ccCcchhhHhhhhhhhhhhhcc---cHHHHHHHHHhHHHHHHHHHhhhc
Q 035696 260 ------DMKDLQMKLLAMDCILEIGYFG---RKEAIDAMLEQGLVKKLVELQRSE 305 (405)
Q Consensus 260 ------dskdl~~r~~amdCileIgy~G---rKe~IEaML~~glVeKLv~LqRse 305 (405)
++.|..++.-|..|+..++--+ |+..++ ..|+|+-||.+=++.
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~---~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE---CDGLVDALIFIVQAE 247 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH---STTHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH---cCCcHHHHHHHHHHh
Confidence 2336788899999999998643 444443 279999999987653
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.86 E-value=0.0061 Score=55.76 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=116.7
Q ss_pred HHHHHHHHhcccCCCCCCh--HHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 121 HIERLTKALKDLDGDGGNV--DELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e--~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
+|..||..|+. ++. +-+..+...+-. +. .-|++-+..|...+.++.|=.+|..+ +..+++++|.++..|
T Consensus 9 ~i~~lV~lL~s-----~~~~~~~q~~Aa~~l~~-L~-~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nL 79 (233)
T 3tt9_A 9 TLERAVSMLEA-----DHMLPSRISAAATFIQH-EC-FQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNL 79 (233)
T ss_dssp CHHHHHHTCCS-----SCCCHHHHHHHHHHHHH-HH-HHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCC-----CCchHHHHHHHHHHHHH-HH-cCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 57889999985 333 334445554433 32 23677888899999999999999544 578999999999999
Q ss_pred HhhcCCceeeeecccccHHHHHHhcc-c-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhc----------
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSS-T-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLD---------- 260 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s-~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLd---------- 260 (405)
+.-| +-.--.+.....|+.||.+.. . .+..+|+.|-. -...=..|.+.| ||.++.+|.
T Consensus 80 a~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~~~~-i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 80 VFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS--NDKLKNLMITEA-LLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp HTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHHHHH-HHHHCCCCCHHHHCCCGGG
T ss_pred HhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHHhcc-HHHHHHHHhccccCCcccc
Confidence 8532 223334566788999999885 3 34456666632 222233444444 999998763
Q ss_pred ------cCcchhhHhhhhhhhhhhhcccHHHHHHHHH-hHHHHHHHHHhhhc
Q 035696 261 ------MKDLQMKLLAMDCILEIGYFGRKEAIDAMLE-QGLVKKLVELQRSE 305 (405)
Q Consensus 261 ------skdl~~r~~amdCileIgy~GrKe~IEaML~-~glVeKLv~LqRse 305 (405)
+.|..++.-|..|+.=++..+ .+.=.+|-. .|+|+.||.+=|+.
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLss~~-~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMSSAG-ADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHTTSC-HHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCcHHHHHHHHHhh
Confidence 136678888999999988754 344444554 59999999997543
No 36
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.23 E-value=0.0093 Score=60.73 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=109.2
Q ss_pred HHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHH-HHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 122 IERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFS-LLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 122 i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~-~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
|.-++..|+. .+.++...++.-+-+-+ -|+.-+.++++.+++. +|..+|.|+ +..||+++|.++-.|+.
T Consensus 36 i~Pll~~L~S-----~~~~~r~~A~~al~~l~---~~~~~~~l~~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 36 ILPVLKDLKS-----PDAKSRTTAAGAIANIV---QDAKCRKLLLREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp THHHHHHHSS-----SCCSHHHHHHHHHHHHT---TSHHHHHHHHHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-----CCHHHHHHHHHHHHHHH---cCcHHHHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 4456677775 33445555555555533 3899999999999986 579999988 56799999999999998
Q ss_pred hcCCceeeeecccccHHHHHHhcccc----------------------------hHHHHHHHHHhhcChh-HHHHHhcCc
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSSTH----------------------------SSKVLCELIKSIKSPL-VDEIESNGE 251 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~~----------------------------s~~vL~~Li~~i~spL-vDei~~~Ge 251 (405)
.+|.-++..+..-.++..|..+.... .+..|+.|-. .+.- ++.+...|-
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e--~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL--ARDEIHEAVATKQT 183 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHTCHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHhccc
Confidence 76654555566666777666654320 1122222221 2333 788888999
Q ss_pred hHHHHHhhccCc---chhhHhhhhhhhhhhhcccHHHHHHHHHhH
Q 035696 252 IPKIISLLDMKD---LQMKLLAMDCILEIGYFGRKEAIDAMLEQG 293 (405)
Q Consensus 252 IpkiislLdskd---l~~r~~amdCileIgy~GrKe~IEaML~~g 293 (405)
||.++.+|-..+ ..++..|.+|+..+..- ..+.++.+...|
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~ 227 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQ 227 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcc
Confidence 999999995543 57899999999988763 445666665554
No 37
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.62 E-value=0.12 Score=53.18 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCC---hHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHH
Q 035696 118 DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFS---RELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYS 194 (405)
Q Consensus 118 Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD---~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~ 194 (405)
+-..|..|+..|++ ..++.-+-.+.--+-+ +..|-. ..+|..|-+.+..+.|-.+|..+ +..|++.++.+
T Consensus 306 ~~~~v~~Ll~LL~~----s~~~~v~E~Aa~AL~n-L~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~A~~a 378 (584)
T 3l6x_A 306 QPEVVRIYISLLKE----SKTPAILEASAGAIQN-LCAGRWTYGRYIRSALRQEKALSAIADLLTNE--HERVVKAASGA 378 (584)
T ss_dssp SHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH-HHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred cccHHHHHHHHHcc----CCCHHHHHHHHHHHHH-HHcCCccccHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHH
Confidence 44567788888876 2344333233333333 323321 35677777889999999999655 55899999999
Q ss_pred HHHHHhhcCCceeeeecccccHHHHHHhcccc---------------hHHHHHHHHHhhcChh-HHHHHhcCchHHHHHh
Q 035696 195 IASLIRFNKDVFVGQVLMGPTVQALLTMSSTH---------------SSKVLCELIKSIKSPL-VDEIESNGEIPKIISL 258 (405)
Q Consensus 195 v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~---------------s~~vL~~Li~~i~spL-vDei~~~GeIpkiisl 258 (405)
|..|++. .+ ...++....|+.||.+.... +..+|++|+. ++|. ...|...|-||+++.+
T Consensus 379 L~nLs~~-~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~~g~I~~Lv~L 453 (584)
T 3l6x_A 379 LRNLAVD-AR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRETQGIEKLVLI 453 (584)
T ss_dssp HHHHHTT-CS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHhCC-hh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHH
Confidence 9999963 32 45666778899999766543 4455555554 6787 8899999999999999
Q ss_pred hccC--cchhhHhhhhhhhhhhhcccHHHHHHHHHhHH
Q 035696 259 LDMK--DLQMKLLAMDCILEIGYFGRKEAIDAMLEQGL 294 (405)
Q Consensus 259 Ldsk--dl~~r~~amdCileIgy~GrKe~IEaML~~gl 294 (405)
|.++ +.+++..|-..+..+. +-||.=..+.++|+
T Consensus 454 L~s~~~~~~v~k~Aa~vL~nl~--~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 454 NKSGNRSEKEVRAAALVLQTIW--GYKELRKPLEKEGW 489 (584)
T ss_dssp HTCSSSCHHHHHHHHHHHHHHH--TSHHHHHHHHTTTC
T ss_pred HhCCCCChHHHHHHHHHHHHHH--cCHHHHHHHHHcCC
Confidence 9987 7788888888777764 35666655555554
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.52 E-value=0.054 Score=49.51 Aligned_cols=88 Identities=10% Similarity=0.162 Sum_probs=69.3
Q ss_pred ccHHHHHHhcccc---------hHHHHHHHHHhhcCh-hHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccH
Q 035696 214 PTVQALLTMSSTH---------SSKVLCELIKSIKSP-LVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRK 283 (405)
Q Consensus 214 ~~V~aLI~m~s~~---------s~~vL~~Li~~i~sp-LvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrK 283 (405)
-+++.||.+.+.. +..+|..|-+ +.| --..|...|-||.+|.+|.+.+..++..|...+.-|++ |..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~--~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~-~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECF--QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF-EDN 84 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHc--CCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCH
Confidence 3677778777652 2334443333 333 46788899999999999999999999999999999987 667
Q ss_pred HHHHHHHHhHHHHHHHHHhhh
Q 035696 284 EAIDAMLEQGLVKKLVELQRS 304 (405)
Q Consensus 284 e~IEaML~~glVeKLv~LqRs 304 (405)
+.-.++.+.|-|..||.|=++
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcc
Confidence 777888999999999999874
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.42 E-value=0.23 Score=48.98 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChH---HHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHH
Q 035696 101 SISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVD---ELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETI 177 (405)
Q Consensus 101 ~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~---e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~ 177 (405)
.|..++......+..|++. .+.-|+..|++. .+.+ ..+.++..+-..+. ..++..+ ..+++.|-..
T Consensus 631 ~l~~l~~~~~~~~~~~~~~-~~~~l~~~l~~~----~~~~vr~~a~~~l~~l~~~~~----~~~~~~~--~~i~~~l~~~ 699 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEA-FKPFLGIGLKNY----AEYQVCLAAVGLVGDLCRALQ----SNIIPFC--DEVMQLLLEN 699 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHH-HHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHHHG----GGGHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH-HHHHHHHHHcCc----chHHHHHHHHHHHHHHHHHHH----HhhhhhH--HHHHHHHHHH
Confidence 3444444444455566654 556677777762 2222 23333444444333 3343322 4566666667
Q ss_pred HhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccc------------------hHHHHHHHHHhhc
Q 035696 178 LCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTH------------------SSKVLCELIKSIK 239 (405)
Q Consensus 178 L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~------------------s~~vL~~Li~~i~ 239 (405)
|.++.-+..+|..++.++..++..-|+-|.. .+..+++.|....... ...++..++..++
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7554345679999999999998754444432 2344555555554432 3566677776665
Q ss_pred Chh------HHHHHhcCchHHHHHhh----ccC--cchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHH
Q 035696 240 SPL------VDEIESNGEIPKIISLL----DMK--DLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVE 300 (405)
Q Consensus 240 spL------vDei~~~GeIpkiislL----dsk--dl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~ 300 (405)
... .+.+. ..+|.|+.++ +.+ +..+|..|+.|+-+++.+...+.+...+...+|..|+.
T Consensus 778 ~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~ 848 (876)
T 1qgr_A 778 GDQENVHPDVMLVQ--PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp CSSSSCCGGGGGSG--GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred cCcccccchHHHHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHH
Confidence 421 11121 2356666666 455 77999999999999886554423333345566666665
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.34 E-value=0.23 Score=41.12 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHH
Q 035696 117 IDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIA 196 (405)
Q Consensus 117 iDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~ 196 (405)
-|.+.+..|+..|++ .+......++..+-. + -+ ...++.|...|.++ ...||..++.++.
T Consensus 16 ~~~~~~~~L~~~L~~-----~~~~vR~~A~~~L~~-~---~~---------~~~~~~L~~~l~~~--~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQD-----DSYYVRRAAAYALGK-I---GD---------ERAVEPLIKALKDE--DAWVRRAAADALG 75 (211)
T ss_dssp CCGGGHHHHHHHTTC-----SSHHHHHHHHHHHHH-H---CC---------GGGHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHcC-----CCHHHHHHHHHHHHH-h---CC---------ccHHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 467788888888886 455555555555543 1 01 24566666666655 4567777766665
Q ss_pred HHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhh
Q 035696 197 SLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILE 276 (405)
Q Consensus 197 aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCile 276 (405)
.+ +. ...++.|+.+..-....+=...+.+++ .+-...-+|.++.+|+.+|..+|..|+..+-.
T Consensus 76 ~~---~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~-----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 76 QI---GD---------ERAVEPLIKALKDEDGWVRQSAAVALG-----QIGDERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp HH---CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHH-----HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hh---CC---------HHHHHHHHHHHcCCCHHHHHHHHHHHH-----HhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44 21 245666666665533333222222211 11223467777888877787777777777655
Q ss_pred hh
Q 035696 277 IG 278 (405)
Q Consensus 277 Ig 278 (405)
++
T Consensus 139 ~~ 140 (211)
T 3ltm_A 139 IG 140 (211)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.99 E-value=0.59 Score=45.98 Aligned_cols=147 Identities=9% Similarity=0.071 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCC-----------c-----
Q 035696 142 LVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKD-----------V----- 205 (405)
Q Consensus 142 ~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkd-----------v----- 205 (405)
.++.|.++-......|.+.+. ..++..+-..+.++ ...||.++.-.+..++....+ +
T Consensus 244 a~~~l~~l~~~~~~~~~~~l~-----~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 244 AFGCLCKIMSKYYTFMKPYME-----QALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHGGGCHHHHH-----HTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 344455544444333433332 14555555555554 568999999888888765311 1
Q ss_pred eeeeecccccHHHHHHhcc----------c----chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhh
Q 035696 206 FVGQVLMGPTVQALLTMSS----------T----HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAM 271 (405)
Q Consensus 206 fVg~vLmg~~V~aLI~m~s----------~----~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~am 271 (405)
|+.++ ...+++.|+..+. + ++..+|..+....+...++.+ +|-+...|.+++++.|..|+
T Consensus 317 ~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l-----~~~l~~~l~~~~~~~r~~a~ 390 (861)
T 2bpt_A 317 FALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV-----LEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp HHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHH-----HHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHH-----HHHHHHHcCCCChhHHHHHH
Confidence 22222 2567788877664 1 566777777776665555543 67778888899999999999
Q ss_pred hhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 272 DCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 272 dCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
.|+-.|+..-.++.+...+. .++..|+..-
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l 420 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVH-QALPSILNLM 420 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc
Confidence 99999886545455554443 4666666543
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.90 E-value=0.15 Score=43.90 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=91.6
Q ss_pred HHHHHHHHhc-ccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 121 HIERLTKALK-DLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 121 ~i~~Lv~~L~-d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
.+..|.+.+. |. +..--...+.++.+|-..+...|.+.+. .+++.|=..|.|+ +..||+.++-++.+++
T Consensus 57 i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~~~~~~------~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 57 LVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRFSNYAS------ACVPSLLEKFKEK--KPNVVTALREAIDAIY 126 (242)
T ss_dssp HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGGHHHHH------HHHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 3455666663 52 1111235566777777766555544332 2455555566676 5689999999999998
Q ss_pred hhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhc-ChhHHHHHhcCchHHHHHhhccCcchhhHhhh
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIK-SPLVDEIESNGEIPKIISLLDMKDLQMKLLAM 271 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~-spLvDei~~~GeIpkiislLdskdl~~r~~am 271 (405)
.... ...+++.|.....- .++..|..++...+ .......+ .-.+|-++.+|...+.++|..|.
T Consensus 127 ~~~~--------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~ 197 (242)
T 2qk2_A 127 ASTS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSA 197 (242)
T ss_dssp TTSC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HcCC--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHH
Confidence 6321 23455556555543 34444444443321 11111111 24689999999999999999999
Q ss_pred hhhhhhhhcccHHHHHHHH
Q 035696 272 DCILEIGYFGRKEAIDAML 290 (405)
Q Consensus 272 dCileIgy~GrKe~IEaML 290 (405)
.|+-.++..=+.+.++.++
T Consensus 198 ~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 198 EALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHcCHHHHHHHH
Confidence 9999988654555555544
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.42 E-value=0.62 Score=45.83 Aligned_cols=166 Identities=13% Similarity=0.211 Sum_probs=95.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhC
Q 035696 101 SISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCN 180 (405)
Q Consensus 101 ~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~ 180 (405)
.++.++.+...++..|++. .+.-|...|.+. +..--...+.++..+-. .+...+...+ ..+++.|-..|.+
T Consensus 621 ~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~~~--~~~vr~~a~~~l~~l~~----~~~~~~~~~~--~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLET-FSPYLLKALNQV--DSPVSITAVGFIADISN----SLEEDFRRYS--DAMMNVLAQMISN 691 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHH-HHHHHHHHHHCT--TSHHHHHHHHHHHHHHH----HTGGGGHHHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHHHHH-HHHHHHHHhccc--cHHHHHHHHHHHHHHHH----HhchhccchH--HHHHHHHHHHhCC
Confidence 4556666666666666654 556666677541 11111223333444333 3333443332 4556666666766
Q ss_pred CCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcc------------------cchHHHHHHHHHhhcChh
Q 035696 181 PSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSS------------------THSSKVLCELIKSIKSPL 242 (405)
Q Consensus 181 ~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s------------------~~s~~vL~~Li~~i~spL 242 (405)
++....+|+.+..++..++..-++-|.. + ...+++.|+.... -+++.+++.++..++..
T Consensus 692 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~-l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~- 768 (861)
T 2bpt_A 692 PNARRELKPAVLSVFGDIASNIGADFIP-Y-LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK- 768 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHH-H-HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred ccccHhhhHHHHHHHHHHHHHhhhhHHH-H-HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 6545689999999999999876665432 1 1345555555444 24567788888777642
Q ss_pred HHHHHhcCchHHHHHhh----cc---C-cchhhHhhhhhhhhhhh-c
Q 035696 243 VDEIESNGEIPKIISLL----DM---K-DLQMKLLAMDCILEIGY-F 280 (405)
Q Consensus 243 vDei~~~GeIpkiislL----ds---k-dl~~r~~amdCileIgy-~ 280 (405)
.+.+ ...++.++.+| .. . |..+|..|++|+-.++. +
T Consensus 769 -~~~~-~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 769 -PEAL-FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp -HHHH-GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -HHHH-HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 1111 11344444444 33 2 78999999999999975 5
No 44
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.29 E-value=1.1 Score=41.87 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=73.7
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP 241 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp 241 (405)
.+++.+-..|.|+ ...||+.++.++..++..-++.| .+..+++.|+.+..- .++.++..+....+.
T Consensus 441 ~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~- 513 (588)
T 1b3u_A 441 KLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ- 513 (588)
T ss_dssp HHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-
Confidence 4566666667665 45799999999999987655543 356677777776654 345555555554332
Q ss_pred hHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhh-ccc
Q 035696 242 LVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGY-FGR 282 (405)
Q Consensus 242 LvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy-~Gr 282 (405)
+......+|-++.+|+..+..+|..++.|+-+++. +|.
T Consensus 514 ---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 514 ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp ---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred ---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 23445577889999999999999999999999884 454
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.21 E-value=1.3 Score=41.25 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=73.3
Q ss_pred hchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcC
Q 035696 168 SKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKS 240 (405)
Q Consensus 168 sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~s 240 (405)
..+++.|..++.|+ +-+||..++-++..++..-+.-|+ ...+++.++....- .+..+|..++...+.
T Consensus 401 ~~~lp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 401 QSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFF----DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGC----CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 34666666667654 557999999999999875443332 23455666554433 677888888887765
Q ss_pred hhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhc
Q 035696 241 PLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYF 280 (405)
Q Consensus 241 pLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~ 280 (405)
.. .....+|.++.++..++..+|..+++|+-.++..
T Consensus 475 ~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 475 EW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Confidence 42 2345688999999999999999999999998754
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.15 E-value=1.2 Score=36.52 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
......++..|++ .+......++..+-. +. + ...++.|-..|.++ ...||..++.++..+
T Consensus 13 ~~~~~~~i~~L~~-----~~~~vr~~A~~~L~~-~~---~---------~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 13 PEKVEMYIKNLQD-----DSYYVRRAAAYALGK-IG---D---------ERAVEPLIKALKDE--DAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHHHHHHTTC-----SCHHHHHHHHHHHHH-HC---C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcC-----CCHHHHHHHHHHHHh-cC---C---------hhHHHHHHHHHcCC--CHHHHHHHHHHHHhh
Confidence 3456667777765 444444444444433 10 1 13444445555443 334666555544433
Q ss_pred HhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhh
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEI 277 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileI 277 (405)
+. ...++.|+.+..-....+=...+.+.+ .+-...-+|.++.+|..+|..+|..|..++-.+
T Consensus 73 ---~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~-----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 73 ---GD---------ERAVEPLIKALKDEDGWVRQSAAVALG-----QIGDERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp ---CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHH-----HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---CC---------HHHHHHHHHHHcCCCHHHHHHHHHHHH-----HhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 21 134555555554422222222222111 111123456666666666666666665554433
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.94 E-value=0.31 Score=41.90 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHh-CCCCCcchhhhhHHHHHHHHhhcCCceeeeeccccc
Q 035696 137 GNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILC-NPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPT 215 (405)
Q Consensus 137 ~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~-~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~ 215 (405)
.+-.+...++..+..-++..-+-.-.+ + .++++.|-..|. |+ ...||..++.++..|+..-+..| .-....+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~--~-~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~--~~~~~~i 99 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGE--Y-GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRF--SNYASAC 99 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCC--C-HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGG--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCC--H-HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 566777777888877665411100011 1 356777777784 65 55799999999999997665543 1233456
Q ss_pred HHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhh-hhhcccHHHHH
Q 035696 216 VQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILE-IGYFGRKEAID 287 (405)
Q Consensus 216 V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCile-Igy~GrKe~IE 287 (405)
++.|+....- .+..+|..++... + ++. .+|.+...|+.+++.+|..++.++-. +..+|......
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~-~~~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYAST--S-LEA-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--C-HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--C-HHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 6777766544 4566666665532 1 233 47889999999999999999999999 56666432222
Q ss_pred HHHHhHHHHHHHHHh
Q 035696 288 AMLEQGLVKKLVELQ 302 (405)
Q Consensus 288 aML~~glVeKLv~Lq 302 (405)
..+. .++..|+.+=
T Consensus 172 ~~l~-~l~p~l~~~l 185 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTL 185 (242)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHh
Confidence 2222 4555555443
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.85 E-value=0.44 Score=48.24 Aligned_cols=188 Identities=13% Similarity=0.226 Sum_probs=111.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcc-----------cCCC-CCChHHHHHHHHHHHHHHhccCChHHHHHHHh
Q 035696 100 HSISRVAGSIETEIQAWIDREHIERLTKALKD-----------LDGD-GGNVDELVKLLTQFEDRVSQGFSRELQDLVLK 167 (405)
Q Consensus 100 ~~isrva~~ie~eiqawiDre~i~~Lv~~L~d-----------~~~~-~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~ 167 (405)
..++.++.++...+..+++. .+..++..+++ ++.. ..+.+-+..++.-+.. +-++++.++...+-.
T Consensus 550 ~~l~~i~~~~g~~~~~~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~-l~~~l~~~~~~~~~~ 627 (852)
T 4fdd_A 550 ECLSSVATALQSGFLPYCEP-VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVAR 627 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH-HHHHHGGGGHHHHHT
T ss_pred HHHHHHHHHHhHhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHH-HHHHHhHhHHHHhcC
Confidence 34556666666666666665 23333333321 1111 1233333334444444 557777888888767
Q ss_pred hchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcC
Q 035696 168 SKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKS 240 (405)
Q Consensus 168 sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~s 240 (405)
.++++.+-..+.++ +..||+.+..++..++++.++-|. +. +..+++.|+....- .+..++..+....+.
T Consensus 628 ~~~~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~-~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 628 SNILTLMYQCMQDK--MPEVRQSSFALLGDLTKACFQHVK-PC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp CCHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGTG-GG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHhhHHHH-HH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 78999888888665 567999999999999987765332 11 23345555555433 344455555555543
Q ss_pred ---hhHHHHHhcCchHHHHHhhccCcc--hhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHH
Q 035696 241 ---PLVDEIESNGEIPKIISLLDMKDL--QMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVE 300 (405)
Q Consensus 241 ---pLvDei~~~GeIpkiislLdskdl--~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~ 300 (405)
|.++ .-++.++.+|++.+. .++.-+..|+-.++..+.- .+--++ .+++..+..
T Consensus 704 ~~~p~~~-----~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~-~~~~~l-~~~~~~~~~ 761 (852)
T 4fdd_A 704 EMQPYIP-----MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ-EVAPML-QQFIRPWCT 761 (852)
T ss_dssp GGGGGTH-----HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHH-HHGGGH-HHHHHHHHH
T ss_pred hHHHHHH-----HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHH-HhCccH-HHHHHHHHH
Confidence 3333 467899999988765 6778888888888887543 332332 344444443
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.59 E-value=2.1 Score=35.03 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
.+.+..|+..|.| .+..-...++.-+.. + -++ ..++.|...|.++ +..||..++.++..+
T Consensus 44 ~~~~~~L~~~l~~-----~~~~vr~~a~~~L~~-~---~~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 44 ERAVEPLIKALKD-----EDAWVRRAAADALGQ-I---GDE---------RAVEPLIKALKDE--DGWVRQSAAVALGQI 103 (201)
T ss_dssp GGGHHHHHHHTTC-----SSHHHHHHHHHHHHH-H---CCG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC-----CCHHHHHHHHHHHHh-h---CCH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 4667888888876 344333344433332 1 122 4566667777665 557998888877654
Q ss_pred HhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
+. -..++.|+.+..-....|=...+.+++ .+-...-+|.++.+|..+|..+|..|...+-.+
T Consensus 104 ---~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~-----~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~- 165 (201)
T 3ltj_A 104 ---GD---------ERAVEPLIKALKDEDWFVRIAAAFALG-----EIGDERAVEPLIKALKDEDGWVRQSAADALGEI- 165 (201)
T ss_dssp ---CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHH-----HHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-
T ss_pred ---Cc---------HHHHHHHHHHHcCCCHHHHHHHHHHHH-----HhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence 32 237888888877644444333333322 222346789999999999999999988887666
Q ss_pred hcccHHHHHHHH
Q 035696 279 YFGRKEAIDAML 290 (405)
Q Consensus 279 y~GrKe~IEaML 290 (405)
|..++++.+.
T Consensus 166 --~~~~~~~~L~ 175 (201)
T 3ltj_A 166 --GGERVRAAME 175 (201)
T ss_dssp --CSHHHHHHHH
T ss_pred --CchhHHHHHH
Confidence 5666555443
No 50
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.50 E-value=1.5 Score=47.26 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=117.3
Q ss_pred HHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCC-CcchhhhhH
Q 035696 114 QAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSC-SKSLREQSA 192 (405)
Q Consensus 114 qawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~-s~~VRe~sA 192 (405)
+.-++...|.-|+..++. ++..-+-++.+=+-+ ++ .|++.++.+.+.+.++.|=.+|...+. ++++|+.+|
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S-----~s~~~re~A~~aL~n-LS--~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 451 KYILRTELISFLKREMHN-----LSPNCKQQVVRIIYN-IT--RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHTTTTTHHHHHHHHGGG-----SCHHHHHHHHHHHHH-HH--TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcC-----CCHHHHHHHHHHHHH-Hc--CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 344566667777777764 344333333333333 43 689999999999999999888855432 256899999
Q ss_pred HHHHHHHhh-cCCc-eeeeecccccHHHHHHhcc---------------c------chHHHHHHHHHhhc---ChhHHHH
Q 035696 193 YSIASLIRF-NKDV-FVGQVLMGPTVQALLTMSS---------------T------HSSKVLCELIKSIK---SPLVDEI 246 (405)
Q Consensus 193 f~v~aLvrf-nkdv-fVg~vLmg~~V~aLI~m~s---------------~------~s~~vL~~Li~~i~---spLvDei 246 (405)
.|++.|.-. |..+ |-|.-. -..|+-|+.+.+ + -|..||.+|-..-. ..+=..|
T Consensus 523 ~ALArLlis~np~~~f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~I 601 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI 601 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 999998732 2222 212211 168899999866 1 24556666654221 1233557
Q ss_pred Hhc-CchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHH-HHHH------HhHHHHHHHHHhhhc
Q 035696 247 ESN-GEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAI-DAML------EQGLVKKLVELQRSE 305 (405)
Q Consensus 247 ~~~-GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~I-EaML------~~glVeKLv~LqRse 305 (405)
... |-+|.|+++|.+.+..+|..|..|++=+.. ..++| ..+. ..+=++-||.|=+++
T Consensus 602 i~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~ 666 (778)
T 3opb_A 602 VSTKVYWSTIENLMLDENVPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQLS 666 (778)
T ss_dssp HHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS
T ss_pred HHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcCC
Confidence 774 899999999999999999999999998775 33333 1221 122377788887654
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.70 E-value=1.7 Score=35.87 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
.+.+..|+..|.| .+..-...++.-+-. + -+ ...++.|-..|.++ +..||..++.++..+
T Consensus 49 ~~~~~~L~~~l~~-----~~~~vr~~a~~aL~~-~---~~---------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 49 ERAVEPLIKALKD-----EDAWVRRAAADALGQ-I---GD---------ERAVEPLIKALKDE--DGWVRQSAAVALGQI 108 (211)
T ss_dssp GGGHHHHHHHTTC-----SCHHHHHHHHHHHHH-H---CC---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcC-----CCHHHHHHHHHHHHh-h---CC---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 4677888888886 233333333333322 1 12 23556666677665 457998887777655
Q ss_pred HhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg 278 (405)
+. ...++.|+.+..-....|-...+.+++. +-...-+|.++.+|+.+|..+|..+...+-.++
T Consensus 109 ---~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~-----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 109 ---GD---------ERAVEPLIKALKDEDWFVRIAAAFALGE-----IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ---CC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHH-----HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---Cc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 32 2477888888766444443333333221 222346899999999999999999888877664
Q ss_pred hcccHHHHHH
Q 035696 279 YFGRKEAIDA 288 (405)
Q Consensus 279 y~GrKe~IEa 288 (405)
..++++.
T Consensus 172 ---~~~~~~~ 178 (211)
T 3ltm_A 172 ---GERVRAA 178 (211)
T ss_dssp ---SHHHHHH
T ss_pred ---chhHHHH
Confidence 4444443
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.55 E-value=1.3 Score=39.77 Aligned_cols=125 Identities=12% Similarity=0.023 Sum_probs=75.2
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhc-------CC----------ceeeee--cccccHHHHHHhcc-----
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFN-------KD----------VFVGQV--LMGPTVQALLTMSS----- 224 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfn-------kd----------vfVg~v--Lmg~~V~aLI~m~s----- 224 (405)
.+++.+-..+.+. ...||.++.-.+..++... .+ ++.+.+ ....+++.|+.++.
T Consensus 259 ~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d 336 (462)
T 1ibr_B 259 ALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (462)
T ss_dssp THHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccc
Confidence 4444444444443 5578988887777776542 11 111100 12556677766553
Q ss_pred -----c----chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHH
Q 035696 225 -----T----HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLV 295 (405)
Q Consensus 225 -----~----~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glV 295 (405)
+ +|..+|..+....+...+. .-+|.+...|.+.+++.|..|+.|+-.|+.-...+.+...+ .+++
T Consensus 337 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~ 410 (462)
T 1ibr_B 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM 410 (462)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHH
T ss_pred cccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHH
Confidence 2 5667777777766644443 34688889999999999999999999888733223222222 3455
Q ss_pred HHHHHH
Q 035696 296 KKLVEL 301 (405)
Q Consensus 296 eKLv~L 301 (405)
.-|+.+
T Consensus 411 ~~l~~~ 416 (462)
T 1ibr_B 411 PTLIEL 416 (462)
T ss_dssp HHHHHG
T ss_pred HHHHHH
Confidence 555544
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.52 E-value=4.7 Score=34.72 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChH-HHHHHHhhchHHHHHH-HHhCCCCCcchhhhhHHHH
Q 035696 118 DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRE-LQDLVLKSKVFSLLET-ILCNPSCSKSLREQSAYSI 195 (405)
Q Consensus 118 Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~-lQdliL~sklf~~Le~-~L~~~~~s~~VRe~sAf~v 195 (405)
+.+.+..|+..|+|+ +..-...++.-+-. + +.++. +. .+++.|.. .+.|+ +..||..++.++
T Consensus 52 ~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~-l--~~~~~~~~------~l~~~L~~~~~~d~--~~~vr~~a~~aL 115 (280)
T 1oyz_A 52 GQDAVRLAIEFCSDK-----NYIRRDIGAFILGQ-I--KICKKCED------NVFNILNNMALNDK--SACVRATAIEST 115 (280)
T ss_dssp CHHHHHHHHHHHTCS-----SHHHHHHHHHHHHH-S--CCCTTTHH------HHHHHHHHHHHHCS--CHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCC-----CHHHHHHHHHHHHH-h--ccccccch------HHHHHHHHHHhcCC--CHHHHHHHHHHH
Confidence 456777888888762 33333333333322 2 21211 11 13445553 34454 456888888888
Q ss_pred HHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhh
Q 035696 196 ASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCIL 275 (405)
Q Consensus 196 ~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCil 275 (405)
..+...+.. ....+++.|+.+..-....|=...+.+.+. +-..+-+|.++.+|..+|..+|..|...+-
T Consensus 116 ~~l~~~~~~------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~-----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 116 AQRCKKNPI------YSPKIVEQSQITAFDKSTNVRRATAFAISV-----INDKATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHCGG------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT-----C---CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhccCCc------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777543311 112456666666554333333333332221 111346788888888888888888877775
Q ss_pred hhhhcccHHHHHH
Q 035696 276 EIGYFGRKEAIDA 288 (405)
Q Consensus 276 eIgy~GrKe~IEa 288 (405)
.+++- ..++++.
T Consensus 185 ~~~~~-~~~~~~~ 196 (280)
T 1oyz_A 185 INKYD-NSDIRDC 196 (280)
T ss_dssp HHTCC-CHHHHHH
T ss_pred hhccC-cHHHHHH
Confidence 55421 3444443
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.33 E-value=1.6 Score=39.00 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=99.5
Q ss_pred HHHHHHHHHh-cccCCCCCChHHHHHHHHHHHHHHh-ccCC-hHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHH
Q 035696 120 EHIERLTKAL-KDLDGDGGNVDELVKLLTQFEDRVS-QGFS-RELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIA 196 (405)
Q Consensus 120 e~i~~Lv~~L-~d~~~~~~~e~e~v~~L~efe~rvs-qgfD-~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~ 196 (405)
+.+.-|.+.+ +|. +..--....++|.+|-..+. .+|. +-... +| +.+=..+.|. ...||+.+..++.
T Consensus 60 ~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~~~y~~~-ll-----p~ll~~l~dk--k~~V~~aa~~al~ 129 (249)
T 2qk1_A 60 NLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFSKDYVSL-VF-----TPLLDRTKEK--KPSVIEAIRKALL 129 (249)
T ss_dssp HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH-HH-----HHHHHGGGCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhcccccccHHHHHH-HH-----HHHHHHHcCC--CHHHHHHHHHHHH
Confidence 4466677777 452 11113456677888877776 6777 43333 22 2222333444 3579999999999
Q ss_pred HHHhhcCCceeeeec-ccccHHHHHHhccc-------chHHHHHHHHHhhcCh-h-HHHHHhcCchHHHHHhhccCcchh
Q 035696 197 SLIRFNKDVFVGQVL-MGPTVQALLTMSST-------HSSKVLCELIKSIKSP-L-VDEIESNGEIPKIISLLDMKDLQM 266 (405)
Q Consensus 197 aLvrfnkdvfVg~vL-mg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp-L-vDei~~~GeIpkiislLdskdl~~ 266 (405)
+++..= ++.. ..- ..+++..|+.++.- .++..|..++..-+.+ - +...+....||-+..+|+-.+..+
T Consensus 130 ~i~~~~-~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~V 207 (249)
T 2qk1_A 130 TICKYY-DPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAI 207 (249)
T ss_dssp HHHHHS-CTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHH
T ss_pred HHHHHc-cccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999743 2211 100 22566677766654 6777888888766642 1 222223567899999999999999
Q ss_pred hHhhhhhhhhhhh-cccHHHHHHHHH
Q 035696 267 KLLAMDCILEIGY-FGRKEAIDAMLE 291 (405)
Q Consensus 267 r~~amdCileIgy-~GrKe~IEaML~ 291 (405)
|..|++|+-.|.- +|. +.++.++.
T Consensus 208 R~aA~~~l~~i~~~vG~-~~~~p~l~ 232 (249)
T 2qk1_A 208 RTIGFESFAILIKIFGM-NTFVKTLE 232 (249)
T ss_dssp HHHHHHHHHHHHHHHCS-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCH-HHHHHHHH
Confidence 9999999999874 454 44555443
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.64 E-value=0.59 Score=47.31 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=90.7
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh
Q 035696 121 HIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIR 200 (405)
Q Consensus 121 ~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr 200 (405)
.+.-+...+++ .+......++.-|-. +..+.+..+.. .-..+++.|-..|.|+ +..||..+++++..+..
T Consensus 360 l~~~l~~~l~~-----~~~~~R~aa~~alg~-i~~~~~~~~~~--~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLLKELLFH-----HEWVVKESGILVLGA-IAEGCMQGMIP--YLPELIPHLIQCLSDK--KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHHTC-----SSHHHHHHHHHHHHH-TTTTTHHHHGG--GHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcC-----CCHHHHHHHHHHHHH-HHhcchHHHHH--HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Confidence 34444444544 233333334444433 43444433332 1145667777777776 67899999999999887
Q ss_pred hcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhh
Q 035696 201 FNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDC 273 (405)
Q Consensus 201 fnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdC 273 (405)
..+.-. ......++++.|+....- .+..+|..++...+..+..- -.+.++.++.+|+..+.+...++++|
T Consensus 430 ~~~~~~-~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~--l~~ll~~L~~~l~~~~~~~~~~~~~a 506 (852)
T 4fdd_A 430 WVVSQP-PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKYQHKNLLILYDA 506 (852)
T ss_dssp HHHHSC-TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG--HHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred Hhccch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH--HHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 543222 223345788888876642 67778888887777654322 24567888999988777777788888
Q ss_pred hhhhh
Q 035696 274 ILEIG 278 (405)
Q Consensus 274 ileIg 278 (405)
+--|+
T Consensus 507 i~~l~ 511 (852)
T 4fdd_A 507 IGTLA 511 (852)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87775
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.43 E-value=9 Score=37.76 Aligned_cols=125 Identities=12% Similarity=0.015 Sum_probs=76.3
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcC--------------C---ceeeee--cccccHHHHHHhcc-----
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNK--------------D---VFVGQV--LMGPTVQALLTMSS----- 224 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnk--------------d---vfVg~v--Lmg~~V~aLI~m~s----- 224 (405)
.+++.+-..+.++ ...||..+.-.+..+++... + +..+.. ....+++.++.++.
T Consensus 259 ~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d 336 (876)
T 1qgr_A 259 ALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (876)
T ss_dssp THHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc
Confidence 4555554444333 45789888877777776421 0 111100 11455666666652
Q ss_pred -----c----chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHH
Q 035696 225 -----T----HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLV 295 (405)
Q Consensus 225 -----~----~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glV 295 (405)
| ++..+|..+....+...++. -+|.+...|..++++.|..|+.|+-.|+..-..+.+...+ .+++
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-----~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l 410 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM 410 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCcHhhHHH-----HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 3 56677777777666444433 4567788888899999999999998888655444454433 4466
Q ss_pred HHHHHH
Q 035696 296 KKLVEL 301 (405)
Q Consensus 296 eKLv~L 301 (405)
..|+.+
T Consensus 411 ~~l~~~ 416 (876)
T 1qgr_A 411 PTLIEL 416 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=91.28 E-value=1.5 Score=47.16 Aligned_cols=201 Identities=12% Similarity=0.161 Sum_probs=125.5
Q ss_pred hhhhhhhhhhhhhhHHHHH--HHHhHHHHHHHHHHhcccCCCC---------CC---hHHHHHHHHHHHHHHhccCC---
Q 035696 96 RVSTHSISRVAGSIETEIQ--AWIDREHIERLTKALKDLDGDG---------GN---VDELVKLLTQFEDRVSQGFS--- 158 (405)
Q Consensus 96 ~~~~~~isrva~~ie~eiq--awiDre~i~~Lv~~L~d~~~~~---------~~---e~e~v~~L~efe~rvsqgfD--- 158 (405)
....+.++|.+-+...++- .+-=.+.|.-|+.-|....+.+ .. .-+.+.+|+-+- ..-|
T Consensus 519 ~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLA----s~~~n~~ 594 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA----SSETSDG 594 (778)
T ss_dssp HHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHH----HCCSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHh----cCCcccc
Confidence 3345566666554444431 1100278999999998311111 11 224444444432 3333
Q ss_pred hHHHHHHHhh-chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeec--cccc----HHHHHHhccc------
Q 035696 159 RELQDLVLKS-KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVL--MGPT----VQALLTMSST------ 225 (405)
Q Consensus 159 ~~lQdliL~s-klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vL--mg~~----V~aLI~m~s~------ 225 (405)
.+++.-|.+. +.++.|+.+|.++ +..||..++.+|..|+. +.+.....|. ..|. ++-||.+...
T Consensus 595 E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r 671 (778)
T 3opb_A 595 EEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ 671 (778)
T ss_dssp HHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHH
T ss_pred hHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHH
Confidence 3678888885 8999999999765 56899999999999995 5553211222 2454 7889999877
Q ss_pred -chHHHHHHHHHhhcChh-HHHHHhc-CchHHHHHhhcc--CcchhhHhhhhhhhhhhhc----ccHHHHHHHH-HhHHH
Q 035696 226 -HSSKVLCELIKSIKSPL-VDEIESN-GEIPKIISLLDM--KDLQMKLLAMDCILEIGYF----GRKEAIDAML-EQGLV 295 (405)
Q Consensus 226 -~s~~vL~~Li~~i~spL-vDei~~~-GeIpkiislLds--kdl~~r~~amdCileIgy~----GrKe~IEaML-~~glV 295 (405)
.|.-+|..+- ...|. ...|.+. |-|+.++++|.. .|..+|.-++-|+.-+..+ |..+.+.... -..++
T Consensus 672 ~AAagALAnLt--s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~ 749 (778)
T 3opb_A 672 RAVAAIFANIA--TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749 (778)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHH
T ss_pred HHHHHHHHHhc--CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHH
Confidence 3333444332 24566 6888887 799999999999 8999998888888888852 3323333333 44555
Q ss_pred HHHHHHhhhc
Q 035696 296 KKLVELQRSE 305 (405)
Q Consensus 296 eKLv~LqRse 305 (405)
+-|+.+-++.
T Consensus 750 ~~l~~~lk~~ 759 (778)
T 3opb_A 750 DALNMSLKRG 759 (778)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHhCC
Confidence 5555555333
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.30 E-value=5.4 Score=42.15 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=76.5
Q ss_pred hchHHHHHHHHhCCCCCcchhhhhHHHHHHHHh-hcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhc
Q 035696 168 SKVFSLLETILCNPSCSKSLREQSAYSIASLIR-FNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIK 239 (405)
Q Consensus 168 sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvr-fnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~ 239 (405)
..+++.+-..|.|++....+|.+++-++..++. .+.+.|.. ...++++.|+...+- .++.++..++...+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~--~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~ 551 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP--HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIR 551 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH--HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhc
Confidence 355677777777775555799999999998876 34443321 235778888775543 35667888887777
Q ss_pred C----------hhHHHHHhcCchHHHHHhh--ccCcchhhHhhhhhhhhhhhccc
Q 035696 240 S----------PLVDEIESNGEIPKIISLL--DMKDLQMKLLAMDCILEIGYFGR 282 (405)
Q Consensus 240 s----------pLvDei~~~GeIpkiislL--dskdl~~r~~amdCileIgy~Gr 282 (405)
. |.++.| +|.++..| ...+..+|..|++|+-.+...+.
T Consensus 552 ~~~~~~~~~~~~~~~~l-----l~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 552 PLDQPSSFDATPYIKDL-----FTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp CSSSCCCCCCHHHHHHH-----HHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred CcccccccchHHHHHHH-----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 6 445554 57888888 55688899999999999987654
No 59
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.15 E-value=2.6 Score=44.49 Aligned_cols=172 Identities=13% Similarity=0.181 Sum_probs=100.3
Q ss_pred hhhhhhhhhhhhhhhHHH------HHHHHhHHHHHHHHHHhcccCCCCCCh---HHHHHHHHHHHHHHhccCChHHHHHH
Q 035696 95 RRVSTHSISRVAGSIETE------IQAWIDREHIERLTKALKDLDGDGGNV---DELVKLLTQFEDRVSQGFSRELQDLV 165 (405)
Q Consensus 95 R~~~~~~isrva~~ie~e------iqawiDre~i~~Lv~~L~d~~~~~~~e---~e~v~~L~efe~rvsqgfD~~lQdli 165 (405)
|......++.++..+..+ +..| -.+.+..|...+.+ ..+. ...+..|.++-......+.+.+.+
T Consensus 103 R~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~----~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~-- 175 (1230)
T 1u6g_C 103 RDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK----QEDVSVQLEALDIMADMLSRQGGLLVNFHPS-- 175 (1230)
T ss_dssp HHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC----CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH--
T ss_pred HHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHhHhHHHHHHHH--
Confidence 444445555555554443 2222 24677777788774 1333 344455555554444555654433
Q ss_pred HhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcc----cchHHHHHHHHHhhcCh
Q 035696 166 LKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSS----THSSKVLCELIKSIKSP 241 (405)
Q Consensus 166 L~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s----~~s~~vL~~Li~~i~sp 241 (405)
+++.|-..|.++ +..||+.++-++..++.+.++.|+.. +|..++..|-.-.. ..++.+|..+....+..
T Consensus 176 ----ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~~~~~-~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~ 248 (1230)
T 1u6g_C 176 ----ILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 248 (1230)
T ss_dssp ----HHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC----CTT-HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred ----HHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH
Confidence 334444455554 45899999999999998888776332 23334444433211 25788888888876543
Q ss_pred hHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhccc
Q 035696 242 LVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGR 282 (405)
Q Consensus 242 LvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~Gr 282 (405)
+.. +-...+|-++..+...+..+|..++.|+-.++..-.
T Consensus 249 ~~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 249 IGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp GTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 321 123578899999988899999999998877766543
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.98 E-value=8 Score=41.09 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=71.7
Q ss_pred cccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhc-CchHHHHHhhccCcchhhHhhhhhhhhhhhcccHH
Q 035696 213 GPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESN-GEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKE 284 (405)
Q Consensus 213 g~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~-GeIpkiislLdskdl~~r~~amdCileIgy~GrKe 284 (405)
...|+.|+.|..+ .+++.|..|......-.=+-|+.. |-||++|++|+.+.-.+|--|+..+.+++- +..+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~ 199 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGA 199 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHH
Confidence 5679999999998 455556666654333234446634 999999999999999999999999999986 5666
Q ss_pred HHHHHHHhHHHHHHHHHhhhccC
Q 035696 285 AIDAMLEQGLVKKLVELQRSELG 307 (405)
Q Consensus 285 ~IEaML~~glVeKLv~LqRse~g 307 (405)
+=...--+|-+++|+.+=++|-|
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHhccHHHHHHHHHhcCC
Confidence 55555556999999999988853
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=85.03 E-value=3 Score=37.55 Aligned_cols=155 Identities=8% Similarity=0.042 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 119 REHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 119 re~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
.+-+..|+..++++ ..+......++.-|..-.+ .+.+++.+-.+ ..+++.+-..|.++.-+..||..++-++..+
T Consensus 127 ~~ll~~L~~~l~~~---~~~~~~r~~al~~l~~l~~-~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 127 PELIPQLVANVTNP---NSTEHMKESTLEAIGYICQ-DIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp TTHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHH-HSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHH-hCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 46788888888862 1144444445555544332 22222211111 2366777777766543678999999998887
Q ss_pred HhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhh
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAM 271 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~am 271 (405)
+.+-++.+-......-+++.|...... .++++|..++..... .+........+|-++..+...+..+|..++
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~ 280 (462)
T 1ibr_B 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKSDIDEVALQGI 280 (462)
T ss_dssp TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 643221110000001123333333332 466677776664322 122212125567777888888889999999
Q ss_pred hhhhhhhh
Q 035696 272 DCILEIGY 279 (405)
Q Consensus 272 dCileIgy 279 (405)
+++..++.
T Consensus 281 ~~l~~~~~ 288 (462)
T 1ibr_B 281 EFWSNVCD 288 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766653
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.48 E-value=4.7 Score=34.73 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHH
Q 035696 118 DREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIAS 197 (405)
Q Consensus 118 Dre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~a 197 (405)
+...+..|+..|.| .+......++..|-. + + ++ ..++.|-..|.++ ...||..+++++..
T Consensus 21 ~~~~i~~L~~~L~~-----~~~~vr~~A~~~L~~-~--~-~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 21 KKLNDDELFRLLDD-----HNSLKRISSARVLQL-R--G-GQ---------DAVRLAIEFCSDK--NYIRRDIGAFILGQ 80 (280)
T ss_dssp HTSCHHHHHHHTTC-----SSHHHHHHHHHHHHH-H--C-CH---------HHHHHHHHHHTCS--SHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHc-----CCHHHHHHHHHHHHc-c--C-Cc---------hHHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 44578899999987 455555555555554 2 1 32 3556666777665 45799988887765
Q ss_pred HHhhcCCceeeeecccccHHHHHHhc-cc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHh
Q 035696 198 LIRFNKDVFVGQVLMGPTVQALLTMS-ST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLL 269 (405)
Q Consensus 198 LvrfnkdvfVg~vLmg~~V~aLI~m~-s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~ 269 (405)
+ +.+.- -..++++.|.+++ .- .+..+|..+-.. .|- ....-+|.++.+|..+|..+|..
T Consensus 81 l---~~~~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~--~~~----~~~~~~~~L~~~l~d~~~~vR~~ 147 (280)
T 1oyz_A 81 I---KICKK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKK--NPI----YSPKIVEQSQITAFDKSTNVRRA 147 (280)
T ss_dssp S---CCCTT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--CGG----GHHHHHHHHHHHTTCSCHHHHHH
T ss_pred h---ccccc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--CCc----ccHHHHHHHHHHhhCCCHHHHHH
Confidence 4 32100 0012233333221 11 334444443221 111 12235788999999999999999
Q ss_pred hhhhhhhhhh
Q 035696 270 AMDCILEIGY 279 (405)
Q Consensus 270 amdCileIgy 279 (405)
|..++-.++.
T Consensus 148 a~~aL~~~~~ 157 (280)
T 1oyz_A 148 TAFAISVIND 157 (280)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHhcCC
Confidence 9888765543
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=77.28 E-value=29 Score=33.08 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=71.8
Q ss_pred chhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccc----hHHHHHHHHHhhcChhHHHH-HhcCchHHHHHhhc
Q 035696 186 SLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTH----SSKVLCELIKSIKSPLVDEI-ESNGEIPKIISLLD 260 (405)
Q Consensus 186 ~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~----s~~vL~~Li~~i~spLvDei-~~~GeIpkiislLd 260 (405)
++|=.-+|++--.+|.|. -||+.++..+.+|.+.. -..||+ .|-++|- +.+ .-+-+.||+++||+
T Consensus 122 kikIn~~yaLeeIaranP------~l~~~v~rdi~smltskd~~Dkl~aLn-Fi~alGe---n~~~yv~PfLprL~aLL~ 191 (253)
T 2db0_A 122 KTKINVSYALEEIAKANP------MLMASIVRDFMSMLSSKNREDKLTALN-FIEAMGE---NSFKYVNPFLPRIINLLH 191 (253)
T ss_dssp HHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHTSCSSHHHHHHHHH-HHHTCCT---TTHHHHGGGHHHHHGGGG
T ss_pred cceecHHHHHHHHHHhCh------HHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHhc---cCccccCcchHHHHHHHc
Confidence 788888999999998884 58999999999999951 123332 1222221 100 01227999999999
Q ss_pred cCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 261 MKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 261 skdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
-+|--.|.-|++-+..++..--| +..-+++||=++.
T Consensus 192 D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~~ 227 (253)
T 2db0_A 192 DGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEELN 227 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHCC
T ss_pred CcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHhc
Confidence 99999999999999999888765 4455566655543
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=75.19 E-value=16 Score=32.55 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=89.4
Q ss_pred CChHHHHHHHHHHHH-HHhccCChHHHHHHHh-hchHHHHHHHH-hCCCCCcchhhhhHHHHHHHHhhcC-Cceeeeecc
Q 035696 137 GNVDELVKLLTQFED-RVSQGFSRELQDLVLK-SKVFSLLETIL-CNPSCSKSLREQSAYSIASLIRFNK-DVFVGQVLM 212 (405)
Q Consensus 137 ~~e~e~v~~L~efe~-rvsqgfD~~lQdliL~-sklf~~Le~~L-~~~~~s~~VRe~sAf~v~aLvrfnk-dvfVg~vLm 212 (405)
.+-.+...++.++.. -+++ .+++...--. ..++..|-..| .|+ +..||..++.++..|+..=+ .-|-++ .-
T Consensus 28 ~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~~~-y~ 102 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFSKD-YV 102 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSCHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhcccccccHH-HH
Confidence 445555566666655 4432 1111100000 24455555566 455 45689999999999986444 333211 11
Q ss_pred cccHHHHHHhccc-------chHHHHHHHHHhhcChh-----HHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhc
Q 035696 213 GPTVQALLTMSST-------HSSKVLCELIKSIKSPL-----VDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYF 280 (405)
Q Consensus 213 g~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-----vDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~ 280 (405)
..+++.++....= .+..+|..++..+ .|. ++. .+|+|+..|+++.+++|..++.|+-.+..-
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~-~~~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY-DPLASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-CTTCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-cccccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2345555554322 4566677776654 221 222 467899999999999999999999998876
Q ss_pred ccH--HHHHHHHHhHHHHHHHHHh
Q 035696 281 GRK--EAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 281 GrK--e~IEaML~~glVeKLv~Lq 302 (405)
..+ +.+...+...++.-|+.+=
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHh
Confidence 654 4444434345555555443
No 65
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.38 E-value=2.5 Score=33.25 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcC
Q 035696 171 FSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNG 250 (405)
Q Consensus 171 f~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~G 250 (405)
.+.|...|.++ +..||..+++++.. .+. +.++.|+.+..-....|=...+.+.+. |-...
T Consensus 14 ~~~l~~~L~~~--~~~vR~~A~~~L~~---~~~----------~~~~~L~~~L~d~~~~vR~~A~~aL~~-----~~~~~ 73 (131)
T 1te4_A 14 LVPRGSHMADE--NKWVRRDVSTALSR---MGD----------EAFEPLLESLSNEDWRIRGAAAWIIGN-----FQDER 73 (131)
T ss_dssp -------CCSS--CCCSSSSCCSSTTS---CSS----------TTHHHHHHGGGCSCHHHHHHHHHHHGG-----GCSHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHH---hCc----------hHHHHHHHHHcCCCHHHHHHHHHHHHh-----cCCHH
Confidence 34455566554 45788888877653 232 236777777665444343333333222 11123
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHH
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAM 289 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaM 289 (405)
-+|.++.+|+.+|..+|..|...+-.+ |..++++.+
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~---~~~~a~~~L 109 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQI---GGERVRAAM 109 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHH---CSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh---CcHHHHHHH
Confidence 489999999999999999998886554 556655543
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=73.21 E-value=14 Score=36.38 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred hchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhc----ccchHHHHHHHHHhhcChhH
Q 035696 168 SKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMS----STHSSKVLCELIKSIKSPLV 243 (405)
Q Consensus 168 sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~----s~~s~~vL~~Li~~i~spLv 243 (405)
..+++.|..+|.|+ +..|+.+++.++..+...+.+.+ -..+..+++..|+... .|.-.++|..+ .... |.
T Consensus 159 ~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l-~~l~-~~- 232 (591)
T 2vgl_B 159 QGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSN-LLDLNPQNINKLLTALNECTEWGQIFILDCL-SNYN-PK- 232 (591)
T ss_dssp HHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH-HTSC-CC-
T ss_pred ccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCcc-chhccHHHHHHHHHcCCCCCchHHHHHHHHH-HHhC-CC-
Confidence 46788899999766 45799999999999887666552 1123445555555432 22222333222 1111 21
Q ss_pred HHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhc--ccHHHHHHHHHhHHHHHHHHHh
Q 035696 244 DEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYF--GRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 244 Dei~~~GeIpkiislLdskdl~~r~~amdCileIgy~--GrKe~IEaML~~glVeKLv~Lq 302 (405)
+.-+....++.+..+|...+..++.-|..|+..++-. ...+.+..+ -..++..|+.|.
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~ 292 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLL 292 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHh
Confidence 1112344688889999999998888888888876531 123334332 234445555554
No 67
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=70.80 E-value=31 Score=33.97 Aligned_cols=150 Identities=11% Similarity=0.140 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhhhHHHHHHHH
Q 035696 120 EHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLI 199 (405)
Q Consensus 120 e~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLv 199 (405)
..++.+-+.|+. ++.+....+++.+..-+..|.|-. .-.|..++ ++. +....+|.-+.+++..+.
T Consensus 13 ~e~~~i~~~L~~-----~~~~~k~~~~~kli~~~~~G~d~~-------~~~~~vi~-l~~--s~~~~~Krl~yl~l~~~~ 77 (591)
T 2vgl_B 13 GEIFELKAELNN-----EKKEKRKEAVKKVIAAMTVGKDVS-------SLFPDVVN-CMQ--TDNLELKKLVYLYLMNYA 77 (591)
T ss_dssp SHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHHTTCCCG-------GGHHHHHH-TTS--SSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHCCCChH-------HHHHHHHH-HhC--CCCHHHHHHHHHHHHHHc
Confidence 345566667774 567788899999999888999742 12333333 332 224568888888888887
Q ss_pred hhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhh
Q 035696 200 RFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMD 272 (405)
Q Consensus 200 rfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amd 272 (405)
..+.|.. --++..|....+- .|+++|+++ ++|-+-+ ..+|.+..+|..++..+|-.|..
T Consensus 78 ~~~~e~~------~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----~l~~~l~~~L~d~~~~VRk~A~~ 143 (591)
T 2vgl_B 78 KSQPDMA------IMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----YLCEPLRKCLKDEDPYVRKTAAV 143 (591)
T ss_dssp HHSHHHH------HTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH----HHHHHHHHHSSCSCHHHHHHHHH
T ss_pred ccCchHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH----HHHHHHHHHcCCCChHHHHHHHH
Confidence 7655541 0122333332222 344444433 3443211 23678999999999999999999
Q ss_pred hhhhhhhcccHHHHHHHHHhHHHHHHHHHh
Q 035696 273 CILEIGYFGRKEAIDAMLEQGLVKKLVELQ 302 (405)
Q Consensus 273 CileIgy~GrKe~IEaML~~glVeKLv~Lq 302 (405)
|+..|.-.+. +.++ ..+++++|..+=
T Consensus 144 al~~i~~~~p-~~~~---~~~~~~~l~~lL 169 (591)
T 2vgl_B 144 CVAKLHDINA-QMVE---DQGFLDSLRDLI 169 (591)
T ss_dssp HHHHHHHSSC-CCHH---HHHHHHHHHHTT
T ss_pred HHHHHHhhCh-hhcc---cccHHHHHHHHh
Confidence 9998877543 3332 246666666654
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=67.77 E-value=18 Score=31.92 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=57.2
Q ss_pred HHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHH-
Q 035696 173 LLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVD- 244 (405)
Q Consensus 173 ~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvD- 244 (405)
++|..|.++ ..++|+.+.-+++.++..-... ..+++.++..+.- .++..|..++...|..-++
T Consensus 107 lveK~l~~~--k~~~~~~a~~~l~~~~~~~~~~-------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 107 LVEKGLTSS--RATTKTQSMSCILSLCGLDTSI-------TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp HHHHTSSCC--CHHHHHHHHHHHHHHHHTSSSS-------HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HHHHHhcCc--cHHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 344445444 4468888877888887543321 1123333333332 4566677776654433221
Q ss_pred HHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh-hcc
Q 035696 245 EIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG-YFG 281 (405)
Q Consensus 245 ei~~~GeIpkiislLdskdl~~r~~amdCileIg-y~G 281 (405)
.-.-..-++-+..+|+..|..+|..|+.|+.++- |+|
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 0011122345677889999999999999999985 556
No 69
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.46 E-value=99 Score=29.00 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=57.6
Q ss_pred hHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh
Q 035696 170 VFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL 242 (405)
Q Consensus 170 lf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL 242 (405)
+.+.|=..|.|+. .+||+..--++..+.. +| .. ..+.+-+..-... ..+..+.++|...|.+
T Consensus 133 ~lP~LveKlGd~k--~~vR~~~r~il~~l~~----v~-~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAK--DNMRTSVRDIVNVLSD----VV-GP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHGGGCSS--HHHHHHHHHHHHHHHH----HH-CH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHhCCCh--HHHHHHHHHHHHHHHH----HC-CH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 4455555556663 4577776555444432 11 11 1122333332222 4566777777777776
Q ss_pred HHHHHhcCch---HHHHHhhccCcchhhHhhhhhhhhhh
Q 035696 243 VDEIESNGEI---PKIISLLDMKDLQMKLLAMDCILEIG 278 (405)
Q Consensus 243 vDei~~~GeI---pkiislLdskdl~~r~~amdCileIg 278 (405)
...-+ |-|..+|..+|..+|.+|+.|+.|+-
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23457 99999999999999999999999864
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=58.68 E-value=8.6 Score=30.10 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcC
Q 035696 171 FSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNG 250 (405)
Q Consensus 171 f~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~G 250 (405)
++.|...|.|+ +..||..++.++.. ++. -..++.|+.+..-....|=...+.+.+ +|-...
T Consensus 44 ~~~L~~~L~d~--~~~vR~~A~~aL~~---~~~---------~~a~~~L~~~L~d~~~~VR~~A~~aL~-----~~~~~~ 104 (131)
T 1te4_A 44 FEPLLESLSNE--DWRIRGAAAWIIGN---FQD---------ERAVEPLIKLLEDDSGFVRSGAARSLE-----QIGGER 104 (131)
T ss_dssp HHHHHHGGGCS--CHHHHHHHHHHHGG---GCS---------HHHHHHHHHHHHHCCTHHHHHHHHHHH-----HHCSHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHh---cCC---------HHHHHHHHHHHcCCCHHHHHHHHHHHH-----HhCcHH
Confidence 35666667654 45788877776544 332 235667766664433222222222211 111223
Q ss_pred chHHHHHhhccCcchhhHhhhhhhhh
Q 035696 251 EIPKIISLLDMKDLQMKLLAMDCILE 276 (405)
Q Consensus 251 eIpkiislLdskdl~~r~~amdCile 276 (405)
-+|.++.+|..+|..+|..|...+-.
T Consensus 105 a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 105 VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 57889999999999999888877644
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=57.02 E-value=29 Score=35.39 Aligned_cols=76 Identities=1% Similarity=0.077 Sum_probs=62.2
Q ss_pred chHHHHHHHHHhhcChh-HHHHHhcCchHHHH-HhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhh
Q 035696 226 HSSKVLCELIKSIKSPL-VDEIESNGEIPKII-SLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQR 303 (405)
Q Consensus 226 ~s~~vL~~Li~~i~spL-vDei~~~GeIpkii-slLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqR 303 (405)
.|..+|+.|+. +|= ...+...|-|+.++ .+|...+..+|+.|..++=-++..|..++.+.|...|++--|..+=+
T Consensus 53 ~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 53 TAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHH
Confidence 67777887763 343 66677888888765 57888899999999999988999999999999999999988888754
Q ss_pred h
Q 035696 304 S 304 (405)
Q Consensus 304 s 304 (405)
+
T Consensus 130 ~ 130 (684)
T 4gmo_A 130 A 130 (684)
T ss_dssp H
T ss_pred h
Confidence 3
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=50.05 E-value=1.2e+02 Score=31.30 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=47.9
Q ss_pred hchHHHHHHHHhCCCCCcchhhhhHHHHHHHHhh-cCCceeeeecccccHHHHHHhccc----chHHHHHHHHHhhcC
Q 035696 168 SKVFSLLETILCNPSCSKSLREQSAYSIASLIRF-NKDVFVGQVLMGPTVQALLTMSST----HSSKVLCELIKSIKS 240 (405)
Q Consensus 168 sklf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrf-nkdvfVg~vLmg~~V~aLI~m~s~----~s~~vL~~Li~~i~s 240 (405)
..+++.+..++.+...+..|.+.++.++..++.. |++ | +++ +.++++-|+....- |.+..+..++...+.
T Consensus 690 ~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~-~-~p~-l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 690 QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS-F-QPM-LQDLCLFIVASFQTRCCAPTLEISKTAIVMFFK 764 (971)
T ss_dssp HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----CTH-HHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh-c-ccc-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC
Confidence 5688888888854333558999999999887654 444 2 443 66777776644332 588899999998877
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=42.58 E-value=1.5e+02 Score=26.01 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeee----ecccccHHHHHH--hccc------chHHHHHHHHHhh
Q 035696 171 FSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQ----VLMGPTVQALLT--MSST------HSSKVLCELIKSI 238 (405)
Q Consensus 171 f~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~----vLmg~~V~aLI~--m~s~------~s~~vL~~Li~~i 238 (405)
...+...+.|. .-.|-+.+.-++.+++.+.+..+... ...+.+++.|+. +++- .++.+|..++...
T Consensus 57 ~~~lkk~l~Ds--N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 57 PTLFAQYITDS--NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp THHHHHHTTCS--SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 34445555554 23466666667777776655444322 234556666664 2322 3566666666543
Q ss_pred cChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhh-hcccH
Q 035696 239 KSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIG-YFGRK 283 (405)
Q Consensus 239 ~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIg-y~GrK 283 (405)
..+- .+ ++-|+..|..|.++++..++.|+.++- .||.+
T Consensus 135 ~~~~--~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 135 TSIT--QS-----VELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp SSSH--HH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcHH--HH-----HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 3221 11 345667889999999999999988763 45643
No 74
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=42.48 E-value=64 Score=26.54 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=11.4
Q ss_pred hcccHHHHHHHHHhH
Q 035696 279 YFGRKEAIDAMLEQG 293 (405)
Q Consensus 279 y~GrKe~IEaML~~g 293 (405)
..|+.++++.+++.|
T Consensus 145 ~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 145 EHGNEEVVKLLEKQG 159 (169)
T ss_dssp HTTCHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHCC
Confidence 568889988888776
No 75
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=41.58 E-value=46 Score=28.20 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCCCc--------hhHHHHhhhhhhhhhhhhhhhHHHHHHH---HhHHHHHHHHHHhcccCCCCCChHH
Q 035696 73 LKTLVQTLHKSRGRNS--------LRSFLARRVSTHSISRVAGSIETEIQAW---IDREHIERLTKALKDLDGDGGNVDE 141 (405)
Q Consensus 73 LktL~~~l~~~~g~~~--------l~sfl~R~~~~~~isrva~~ie~eiqaw---iDre~i~~Lv~~L~d~~~~~~~e~e 141 (405)
|.+.++=|...-+. | |-..|.|++|...|.+||..+..+ ..+ ||+..|..++..+-+. .-.+++
T Consensus 13 l~siv~WLRaGYPe-GVP~~Dy~PLlALL~R~Ltddev~~Va~~L~~~-~~~~~pi~~~dI~~~It~vT~~---~P~~eD 87 (107)
T 3ol3_A 13 MDNVLGWLHKGYPE-GVPPKDYFALLALLKRSLTEDEVVRAAQAILRS-TDGQSPVTDDDIRNAVHQIIEK---EPTAEE 87 (107)
T ss_dssp HHHHHHHHHHHCTT-CBCGGGHHHHHHHHTCCCCHHHHHHHHHHHHHH-CCSSSCBCHHHHHHHHHHHHSS---CCCHHH
T ss_pred HHHHHHHHHccCCC-CCCCCccHHHHHHhcccCCHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHhcC---CcCHHH
Confidence 44555555544433 3 889999999999999999888664 235 9999999999999884 666767
Q ss_pred HHHHHHHHHH
Q 035696 142 LVKLLTQFED 151 (405)
Q Consensus 142 ~v~~L~efe~ 151 (405)
+-++-..|+.
T Consensus 88 i~RV~arLaa 97 (107)
T 3ol3_A 88 INQVAARLAS 97 (107)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7766666654
No 76
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=35.33 E-value=29 Score=25.64 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=20.0
Q ss_pred CccHHHHHHHHHHHHHHHHHhhcChh
Q 035696 365 GLRQREKRALKQEILLRVREASASDA 390 (405)
Q Consensus 365 gL~~~EkR~~K~eILrrVReA~~s~a 390 (405)
+.+..+-..||||||+-||.-..--+
T Consensus 3 ~~~~~dle~~KqEIL~E~RkElqK~K 28 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKELQKVK 28 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999997654433
No 77
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=29.02 E-value=1.2e+02 Score=26.98 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhh-----chHHHHHHHHhCCCCCcchhhhhHHHHHH
Q 035696 123 ERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKS-----KVFSLLETILCNPSCSKSLREQSAYSIAS 197 (405)
Q Consensus 123 ~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~s-----klf~~Le~~L~~~~~s~~VRe~sAf~v~a 197 (405)
+.++..|+|- ---|.+++++|..+..|+ +-||+|+..+-++ +=..+||.++.....+.+-.. | ++..
T Consensus 8 dlfi~~L~Di---y~aE~Q~~~aL~~ma~~~--a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k-~--~m~g 79 (171)
T 3ogh_B 8 EHYHDWLRDA---HAMEKQAESMLESMASRI--DNYPELRARIEQHLSETKNQIVQLETILDRNDISRSVIK-D--SMSK 79 (171)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH-H--HHHT
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccch-H--HHHH
Confidence 3456677763 456778888887776643 4689999988776 346789988843333333333 4 4788
Q ss_pred HHhhcCCceeeeecccccHHHHHHhccc------chHHHHHHHHHhhcC
Q 035696 198 LIRFNKDVFVGQVLMGPTVQALLTMSST------HSSKVLCELIKSIKS 240 (405)
Q Consensus 198 LvrfnkdvfVg~vLmg~~V~aLI~m~s~------~s~~vL~~Li~~i~s 240 (405)
|+..+.+ ++|.+-.++++.+-+. ++- .+|..|..+-...|-
T Consensus 80 li~e~~~-~~~~~~~d~v~d~~la-aq~vEHyEIA~YgtL~a~A~~lG~ 126 (171)
T 3ogh_B 80 MAALGQS-IGGIFPSDEIVKGSIS-GYVFEQFEIACYTSLLAAAKNAGD 126 (171)
T ss_dssp TC-------------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HhccccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9977666 7888777777777552 222 566666665554443
No 78
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.71 E-value=80 Score=25.61 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHhhhhhhcCCCCCCCCCChHHHHHHHchhccccccccCCCCchhHHHHHHHHHH
Q 035696 11 PRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKT 75 (405)
Q Consensus 11 ~~~l~vLeaLk~As~~lq~~~~~~~~~~~~~ai~ALleLe~e~~~ils~dP~ls~Ls~~L~~Lkt 75 (405)
+..+.+|.+|..+++.. |.. .-.-.-+...+.+.. |+|||+|++|..
T Consensus 16 ~~q~~vL~~L~~~~~~~---~g~---~~s~~eLa~~l~l~~------------stLsR~l~rLe~ 62 (96)
T 2obp_A 16 PAIVEVLLVLREAGIEN---GAT---PWSLPKIAKRAQLPM------------SVLRRVLTQLQA 62 (96)
T ss_dssp HHHHHHHHHHHHHTSST---TCC---CCBHHHHHHHHTCCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC---CCC---CcCHHHHHHHhCCch------------hhHHHHHHHHHH
Confidence 45678899998876532 221 223456777777776 999999999874
No 79
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.57 E-value=2.5e+02 Score=30.81 Aligned_cols=127 Identities=9% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhHHHHhhhh---------------hhhhhhh-hhhhHHHH-HHHHhHHHHHHHHHHh
Q 035696 67 SQHLADLKTLVQTLHKSRGRNSLRSFLARRVS---------------THSISRV-AGSIETEI-QAWIDREHIERLTKAL 129 (405)
Q Consensus 67 s~~L~~LktL~~~l~~~~g~~~l~sfl~R~~~---------------~~~isrv-a~~ie~ei-qawiDre~i~~Lv~~L 129 (405)
|+....+||++.-|..+-+. +-.+.+...+. ...+++. |.++=.-+ |.++..+.+...+.++
T Consensus 728 s~y~~~~kTvl~wl~~~l~~-~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l 806 (997)
T 1vsy_5 728 TDYFYRTSTIFYWIKEMARG-PNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYV 806 (997)
T ss_dssp SHHHHHHHHHHHHHHHHSSG-GGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45566678887666666554 42222222222 2267887 76776667 8889999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHH---hccCChHHHHHHHhhchHHHHHHHHhCCCCC-cchhhhhHHHHHHHHhhc
Q 035696 130 KDLDGDGGNVDELVKLLTQFEDRV---SQGFSRELQDLVLKSKVFSLLETILCNPSCS-KSLREQSAYSIASLIRFN 202 (405)
Q Consensus 130 ~d~~~~~~~e~e~v~~L~efe~rv---sqgfD~~lQdliL~sklf~~Le~~L~~~~~s-~~VRe~sAf~v~aLvrfn 202 (405)
.+-.....+- +.+.+|+=+..-+ .=-++++-. ..++..+-.+|+|+ + --||+.+|-+++.|++-.
T Consensus 807 ~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~-----~~i~~~v~~~L~D~--q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 807 CSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEK-----NKILEFVVSNLYNE--QFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp SCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHH-----HHTHHHHTTTTTCS--SCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHH-----HHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcC
Confidence 7642223444 5555554433322 111233322 36777788888888 3 449999999999998654
No 80
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=25.29 E-value=1.1e+02 Score=27.02 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=54.0
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhh-----chHHHHHHHHhCCCCCcchhhhhHHHHHHH
Q 035696 124 RLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKS-----KVFSLLETILCNPSCSKSLREQSAYSIASL 198 (405)
Q Consensus 124 ~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~s-----klf~~Le~~L~~~~~s~~VRe~sAf~v~aL 198 (405)
-++..|+|- ---|.+++++|..+..|+ +-||+|+..+-++ +=..+||.++.....+.+-.. | ++..|
T Consensus 6 lf~~~L~Di---y~aE~Q~~~aL~~ma~~~--a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k-~--~m~gl 77 (166)
T 3hiu_A 6 RLVKWLQDA---YAMEKEAETMMAAMASRI--EHYPELKRRIEQHVEETQQQSAGVQRCLELLNGSIPTAK-G--MLSSV 77 (166)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC---------
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCc-h--HHHHH
Confidence 345666663 445778888887776643 6699999988776 346788988843222223222 5 36888
Q ss_pred HhhcCCceeeeecccccHHHHHHhccc------chHHHHHHHHHhhcC
Q 035696 199 IRFNKDVFVGQVLMGPTVQALLTMSST------HSSKVLCELIKSIKS 240 (405)
Q Consensus 199 vrfnkdvfVg~vLmg~~V~aLI~m~s~------~s~~vL~~Li~~i~s 240 (405)
+..+.. ++|.+-.++++.+-+ .++- .+|..|..+-...|-
T Consensus 78 i~e~~~-~~~~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~lG~ 123 (166)
T 3hiu_A 78 LASMHA-AGNSMMTDEVTKGVG-ISYAFEHLEIASYRALVVAARSAGE 123 (166)
T ss_dssp -------------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-HhccccCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 866666 777776666677654 1111 666666666554443
No 81
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=23.75 E-value=2.1e+02 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhHHHHhhhhhhhhhhhhhhhHHHHHHH
Q 035696 67 SQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAW 116 (405)
Q Consensus 67 s~~L~~LktL~~~l~~~~g~~~l~sfl~R~~~~~~isrva~~ie~eiqaw 116 (405)
...+..|...++||+.+.|.=| ...|..+|-.+|+=+..|
T Consensus 41 ~e~l~~lfR~~HTLKGsA~~~G----------~~~i~~laH~lE~ll~~l 80 (144)
T 3kyj_A 41 AAHVGPLFRAVHTFKGNSRVLG----------LSVVESRAHLCEDLIGLV 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhHHHhcC----------chHHHHHHHHHHHHHHHH
Confidence 3556667777777776655322 244555555555444433
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=23.17 E-value=4.8e+02 Score=26.23 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=59.1
Q ss_pred chHHHHHHHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcCh
Q 035696 169 KVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSP 241 (405)
Q Consensus 169 klf~~Le~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~sp 241 (405)
.+.+.+...|..+..+..||.-+|+++.++.+.+.|..-. ...++.|..+..- +|..+|+.+.......
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM----GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC----CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc----hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 4455566666322336689999999999999988776542 3556666666543 5555666655432211
Q ss_pred hHHHHHhcCchHHHHHhhc----cC-------------cchhhHhhhhhhhhhh
Q 035696 242 LVDEIESNGEIPKIISLLD----MK-------------DLQMKLLAMDCILEIG 278 (405)
Q Consensus 242 LvDei~~~GeIpkiislLd----sk-------------dl~~r~~amdCileIg 278 (405)
-...+|+++..|. .+ |.-.++..++++--++
T Consensus 222 ------~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 222 ------FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp ------HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred ------HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 1235666665553 22 4456666666654433
No 83
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.77 E-value=85 Score=33.14 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCC-----CchhHHHHhhhh-----hhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccC
Q 035696 64 STLSQHLADLKTLVQTLHKSRGR-----NSLRSFLARRVS-----THSISRVAGSIETEIQAWIDREHIERLTKALKDLD 133 (405)
Q Consensus 64 s~Ls~~L~~LktL~~~l~~~~g~-----~~l~sfl~R~~~-----~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~ 133 (405)
..+...|..||..++.++++.-- +.+.-.|..++. .-.+++++.-++.-|| +|+++...++ ..++-
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIq-yLKekVdnQl-snIrv-- 135 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIE-VLKRKVIEKV-QHIQL-- 135 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHH-HHHHHHHHHH-HHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-HHHHHHHHHH-HHHHH--
Confidence 45777888888888887665431 012223322222 2345666666666554 5655544443 44443
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 035696 134 GDGGNVDELVKLLTQFEDRV 153 (405)
Q Consensus 134 ~~~~~e~e~v~~L~efe~rv 153 (405)
++.+.++++.-||+||--|
T Consensus 136 -LQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 136 -LQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 2467778888888888766
No 84
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=21.53 E-value=23 Score=31.66 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=23.2
Q ss_pred HHHHHHHHhHHHH---HHHHHhhhccC------CchhhH---HHHHhhh
Q 035696 284 EAIDAMLEQGLVK---KLVELQRSELG------GDLIEM---ERFEEKE 320 (405)
Q Consensus 284 e~IEaML~~glVe---KLv~LqRse~g------~~li~~---~~~~~~~ 320 (405)
+.||+.+++-|=+ .-|++||+|+- ..+|.- ++|..+.
T Consensus 5 D~IE~yik~lL~~s~~~~ieI~R~eLA~~F~CvPSQINYVl~TRFT~e~ 53 (155)
T 3h0d_A 5 DIIEQYLKQVLNMSDQDIVEIKRSEIANKFRCVPSQINYVINTRFTLER 53 (155)
T ss_dssp HHHHHHHHHHHTTSSSSEEEECHHHHHHHTTSCTHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHhCCCCeEEEeHHHHHHhcCCChhhceEEEeeeecCCC
Confidence 5677777555433 36778888862 233332 8898874
No 85
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.89 E-value=1.9e+02 Score=22.70 Aligned_cols=57 Identities=7% Similarity=0.136 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhH
Q 035696 227 SSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQG 293 (405)
Q Consensus 227 s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~g 293 (405)
..++||.-+..-.-..+.-+++.|--+ +.+|.. ..-+++++ ...|..++++.+++.|
T Consensus 72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~-g~t~L~~A---~~~~~~~~v~~Ll~~g 128 (179)
T 3f6q_A 72 DDTPLHLAASHGHRDIVQKLLQYKADI------NAVNEH-GNVPLHYA---CFWGQDQVAEDLVANG 128 (179)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTT-SCCHHHHH---HHTTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCC-CCCHHHHH---HHcCCHHHHHHHHHCC
Confidence 345566555544434455555555211 111111 11233333 3567888888777654
No 86
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=20.41 E-value=4.3e+02 Score=26.28 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCC
Q 035696 104 RVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSC 183 (405)
Q Consensus 104 rva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~ 183 (405)
|-+.+.+.|- +.|.+| +.++-+.+++ .+.....++|+.+..-+..|+|- +..|.-.=.++..+
T Consensus 20 r~~~~~~~e~-~~i~~e-~~~ir~~l~~-----~~~~~k~~~l~kli~~~~~G~d~--------~~~~~~vik~~~s~-- 82 (618)
T 1w63_A 20 RTARTQAEER-EMIQKE-CAAIRSSFRE-----EDNTYRCRNVAKLLYMHMLGYPA--------HFGQLECLKLIASQ-- 82 (618)
T ss_dssp TTCCCHHHHH-HHHHHH-HHHHHHHHTT-----TCTTTHHHHHHHHHHHHHTTCCC--------GGGHHHHHHHHHSS--
T ss_pred HcCCChHHHH-HHHHHH-HHHHHHHhhC-----CCHHHHHHHHHHHHHHHHcCCCC--------cchHHHHHHHHcCC--
Q ss_pred CcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhcccchHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCc
Q 035696 184 SKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKD 263 (405)
Q Consensus 184 s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskd 263 (405)
...+|.-.-++++.+...+.|+.+ -++..|..-..-..-.+=+.-++.++.--..++. ...+|-+..+|..++
T Consensus 83 ~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~-~~l~~~l~~~L~~~~ 155 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMC-RDLAGEVEKLLKTSN 155 (618)
T ss_dssp SHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHcCCC
Q ss_pred chhhHhhhhhhhhhh
Q 035696 264 LQMKLLAMDCILEIG 278 (405)
Q Consensus 264 l~~r~~amdCileIg 278 (405)
..+|-.|..|+..|.
T Consensus 156 ~~VRk~A~~al~~l~ 170 (618)
T 1w63_A 156 SYLRKKAALCAVHVI 170 (618)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Done!